Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25818110
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 67000 characters in sequence are not A, C, G, or T
File 35 of 127
Found at i:7189656 original size:2 final size:2
Alignment explanation
Indices: 7189649--7189677 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7189639 TCGATTCTAA
7189649 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7189678 CTTATTTCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7194894 original size:2 final size:2
Alignment explanation
Indices: 7194887--7194914 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7194877 GTTTTGAGCT
7194887 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7194915 CACACACACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7195140 original size:15 final size:16
Alignment explanation
Indices: 7195120--7195149 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7195110 GAGAAACATA
7195120 AAAGCC-AAAATGGCT
1 AAAGCCAAAAATGGCT
7195135 AAAGCCAAAAATGGC
1 AAAGCCAAAAATGGC
7195150 AATGTGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.20, T:0.10
Consensus pattern (16 bp):
AAAGCCAAAAATGGCT
Found at i:7196408 original size:12 final size:11
Alignment explanation
Indices: 7196393--7196441 Score: 62
Period size: 11 Copynumber: 4.3 Consensus size: 11
7196383 ATCTCATTTC
*
7196393 TTTTCTTTTAG
1 TTTTTTTTTAG
7196404 TTTTTTCTTTAG
1 TTTTTT-TTTAG
*
7196416 TTTTCTTTTAG
1 TTTTTTTTTAG
7196427 TTTTTTTTATAG
1 TTTTTTTT-TAG
7196439 TTT
1 TTT
7196442 GGCTAAGGTG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
11 17 0.52
12 16 0.48
ACGTcount: A:0.10, C:0.06, G:0.08, T:0.76
Consensus pattern (11 bp):
TTTTTTTTTAG
Found at i:7196419 original size:11 final size:12
Alignment explanation
Indices: 7196393--7196441 Score: 59
Period size: 12 Copynumber: 4.2 Consensus size: 12
7196383 ATCTCATTTC
7196393 TTTTCTTTTAGT
1 TTTTCTTTTAGT
7196405 TTTT-TCTTTAG-
1 TTTTCT-TTTAGT
7196416 TTTTCTTTTAGT
1 TTTTCTTTTAGT
7196428 TTTT-TTTATAGT
1 TTTTCTTT-TAGT
7196440 TT
1 TT
7196442 GGCTAAGGTG
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
11 13 0.39
12 20 0.61
ACGTcount: A:0.10, C:0.06, G:0.08, T:0.76
Consensus pattern (12 bp):
TTTTCTTTTAGT
Found at i:7196420 original size:23 final size:23
Alignment explanation
Indices: 7196393--7196441 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 23
7196383 ATCTCATTTC
7196393 TTTTCTTTTAGTTTTTTCTT-TAG
1 TTTTCTTTTAGTTTTTT-TTATAG
7196416 TTTTCTTTTAGTTTTTTTTATAG
1 TTTTCTTTTAGTTTTTTTTATAG
7196439 TTT
1 TTT
7196442 GGCTAAGGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
22 2 0.08
23 23 0.92
ACGTcount: A:0.10, C:0.06, G:0.08, T:0.76
Consensus pattern (23 bp):
TTTTCTTTTAGTTTTTTTTATAG
Found at i:7207859 original size:19 final size:19
Alignment explanation
Indices: 7207835--7207874 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
7207825 GAAATTTGAT
7207835 TTTAATCTATTTAAGATTG
1 TTTAATCTATTTAAGATTG
* *
7207854 TTTAATCTGTTTTAGATTG
1 TTTAATCTATTTAAGATTG
7207873 TT
1 TT
7207875 CTTTTTAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.25, C:0.05, G:0.12, T:0.57
Consensus pattern (19 bp):
TTTAATCTATTTAAGATTG
Found at i:7207997 original size:2 final size:2
Alignment explanation
Indices: 7207992--7208045 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
7207982 ATAGATAGAT
7207992 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
7208034 AG AG AG AG AG AG
1 AG AG AG AG AG AG
7208046 GTGTGACAAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7209187 original size:11 final size:11
Alignment explanation
Indices: 7209157--7209188 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
7209147 TTTTAAAATT
7209157 TATCATTTTTA
1 TATCATTTTTA
7209168 TAT--TTTTTA
1 TATCATTTTTA
7209177 TATCATTTTTA
1 TATCATTTTTA
7209188 T
1 T
7209189 GTTATATCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 9 0.47
11 10 0.53
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (11 bp):
TATCATTTTTA
Found at i:7216402 original size:6 final size:6
Alignment explanation
Indices: 7216351--7216443 Score: 61
Period size: 6 Copynumber: 15.8 Consensus size: 6
7216341 AGTTTAAAAT
* * * ** *
7216351 TTTTAA -TTTGA TTTTGA TTTTGA TTTTGC TTTTAA TTTCAA TTTTTAA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA -TTTTAA
*
7216399 TTTTTAA TTTTGA TTTT-- TTTGT-- TTTTAA TTTTAA TTTTAA TTTTA
1 -TTTTAA TTTTAA TTTTAA TTT-TAA TTTTAA TTTTAA TTTTAA TTTTA
7216444 GTCAAGGTTA
Statistics
Matches: 75, Mismatches: 7, Indels: 10
0.82 0.08 0.11
Matches are distributed among these distances:
4 4 0.05
5 8 0.11
6 51 0.68
7 12 0.16
ACGTcount: A:0.23, C:0.02, G:0.06, T:0.69
Consensus pattern (6 bp):
TTTTAA
Found at i:7216402 original size:7 final size:7
Alignment explanation
Indices: 7216380--7216442 Score: 60
Period size: 7 Copynumber: 9.4 Consensus size: 7
7216370 TTGATTTTGC
7216380 TTTTAA-
1 TTTTAAT
*
7216386 TTTCAAT
1 TTTTAAT
7216393 TTTTAAT
1 TTTTAAT
7216400 TTTTAAT
1 TTTTAAT
* *
7216407 TTTGATT
1 TTTTAAT
**
7216414 TTTTTGT
1 TTTTAAT
7216421 TTTTAA-
1 TTTTAAT
7216427 TTTTAA-
1 TTTTAAT
7216433 TTTTAAT
1 TTTTAAT
7216440 TTT
1 TTT
7216443 AGTCAAGGTT
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
6 17 0.37
7 29 0.63
ACGTcount: A:0.24, C:0.02, G:0.03, T:0.71
Consensus pattern (7 bp):
TTTTAAT
Found at i:7217082 original size:17 final size:17
Alignment explanation
Indices: 7217062--7217138 Score: 72
Period size: 17 Copynumber: 4.5 Consensus size: 17
7217052 ATATGGTATT
7217062 TATT-TTTGCATGACTAA
1 TATTATTTGCATGA-TAA
7217079 TATTATATTTGCATGATAA
1 TA-T-TATTTGCATGATAA
*
7217098 T-TTATTTGCATAAT-A
1 TATTATTTGCATGATAA
7217113 TATTTATTTGCATGATTAA
1 TA-TTATTTGCATGA-TAA
7217132 TA-TATTT
1 TATTATTT
7217139 ATTTGTGTGA
Statistics
Matches: 51, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
15 2 0.04
16 11 0.22
17 19 0.37
18 2 0.04
19 8 0.16
20 9 0.18
ACGTcount: A:0.32, C:0.06, G:0.09, T:0.52
Consensus pattern (17 bp):
TATTATTTGCATGATAA
Found at i:7217234 original size:24 final size:24
Alignment explanation
Indices: 7217169--7217281 Score: 96
Period size: 24 Copynumber: 4.9 Consensus size: 24
7217159 TATTTGCATG
* * *
7217169 TTATTAATATATTTATTTGTATGA
1 TTATTAATATATTTAATTGCATTA
* *
7217193 TTA-T-ATTTAATTTGATTGCATTA
1 TTATTAATAT-ATTTAATTGCATTA
7217216 TTATTAATATATTTAATTGC-TTGA
1 TTATTAATATATTTAATTGCATT-A
*
7217240 TTATTAATATATTTATTTGC---A
1 TTATTAATATATTTAATTGCATTA
*
7217261 TGATT-ATATATTTAATTGCAT
1 TTATTAATATATTTAATTGCAT
7217282 GTTTATTTGC
Statistics
Matches: 73, Mismatches: 10, Indels: 14
0.75 0.10 0.14
Matches are distributed among these distances:
20 13 0.18
21 5 0.07
22 3 0.04
23 16 0.22
24 33 0.45
25 3 0.04
ACGTcount: A:0.33, C:0.04, G:0.08, T:0.56
Consensus pattern (24 bp):
TTATTAATATATTTAATTGCATTA
Found at i:7217252 original size:71 final size:64
Alignment explanation
Indices: 7217108--7217277 Score: 200
Period size: 71 Copynumber: 2.5 Consensus size: 64
7217098 TTTATTTGCA
*
7217108 TAATATATTTATTTGCATGATTAATATATTTATTTGTGTGATTTATTAATATATTTGCATGTTAT
1 TAATATATTTATTTGCATGATT-ATATATTAATTTGTGTGATTTATTAATATATTTGCATGTTAT
*
7217173 TAATATATTTATTTGTATGATTATAT-TTAATTTGAT-TGCATTATTATTAATATATTTAATTGC
1 TAATATATTTATTTGCATGATTATATATTAATTTG-TGTG-A-T-TTATTAATATA--T--TTGC
*
7217236 TTGATTAT
58 ATG-TTAT
7217244 TAATATATTTATTTGCATGATTATATATTTAATT
1 TAATATATTTATTTGCATGATTATATA-TTAATT
7217278 GCATGTTTAT
Statistics
Matches: 90, Mismatches: 4, Indels: 14
0.83 0.04 0.13
Matches are distributed among these distances:
63 9 0.10
64 6 0.07
65 22 0.24
66 11 0.12
68 1 0.01
70 6 0.07
71 29 0.32
73 6 0.07
ACGTcount: A:0.32, C:0.03, G:0.09, T:0.56
Consensus pattern (64 bp):
TAATATATTTATTTGCATGATTATATATTAATTTGTGTGATTTATTAATATATTTGCATGTTAT
Found at i:7217272 original size:44 final size:44
Alignment explanation
Indices: 7217110--7217288 Score: 156
Period size: 44 Copynumber: 4.0 Consensus size: 44
7217100 TATTTGCATA
* *
7217110 ATATATTTATTTGCATGATTAATATATTTATTTGTGTGATTTATT
1 ATATATTTATTTGCATGATTAATATATTTAATTGTATGA-TTATT
*
7217155 A-ATA--TATTTGCATGTTATTAATATATTTATTTGTATGATTA-T
1 ATATATTTATTTGCATG--ATTAATATATTTAATTGTATGATTATT
* *
7217197 ATTTAATTTGA-TTGCATTATTATTAATATATTTAATTGCT-TGATTATT
1 ATAT-ATTT-ATTTGC---ATGATTAATATATTTAATTG-TATGATTATT
* *
7217245 AATATATTTATTTGCATGATT-ATATATTTAATTGCATGTTTATT
1 -ATATATTTATTTGCATGATTAATATATTTAATTGTATGATTATT
7217289 TGCATTATTA
Statistics
Matches: 111, Mismatches: 8, Indels: 31
0.74 0.05 0.21
Matches are distributed among these distances:
42 12 0.11
43 4 0.04
44 45 0.41
45 6 0.05
46 5 0.05
47 24 0.22
48 10 0.09
49 5 0.05
ACGTcount: A:0.31, C:0.03, G:0.09, T:0.56
Consensus pattern (44 bp):
ATATATTTATTTGCATGATTAATATATTTAATTGTATGATTATT
Found at i:7217287 original size:32 final size:32
Alignment explanation
Indices: 7217251--7217392 Score: 184
Period size: 32 Copynumber: 4.5 Consensus size: 32
7217241 TATTAATATA
7217251 TTTATTTGCATGATTATATATTTAATTGCATG
1 TTTATTTGCATGATTATATATTTAATTGCATG
* *
7217283 TTTATTTGCATTATTATATATTTAACTGCATG
1 TTTATTTGCATGATTATATATTTAATTGCATG
* **
7217315 TTTATTTGCATGATT-TGTA-TT-ATTATAT-
1 TTTATTTGCATGATTATATATTTAATTGCATG
*
7217343 TATTATTTGCATGATCATATATTTAATTGCATG
1 T-TTATTTGCATGATTATATATTTAATTGCATG
*
7217376 TCTATTTGCATGATTAT
1 TTTATTTGCATGATTAT
7217393 TAATTTAGTT
Statistics
Matches: 92, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
28 1 0.01
29 17 0.18
30 5 0.05
31 5 0.05
32 63 0.68
33 1 0.01
ACGTcount: A:0.27, C:0.08, G:0.11, T:0.54
Consensus pattern (32 bp):
TTTATTTGCATGATTATATATTTAATTGCATG
Found at i:7217306 original size:20 final size:20
Alignment explanation
Indices: 7217283--7217374 Score: 55
Period size: 20 Copynumber: 4.5 Consensus size: 20
7217273 TAATTGCATG
7217283 TTTATTTGCATTATTATATA
1 TTTATTTGCATTATTATATA
** *
7217303 TTTAACTGCATGT-TTATTTGCA
1 TTTATTTGCAT-TATTATAT--A
* *
7217325 -TGATTTGTATTATTATAT-
1 TTTATTTGCATTATTATATA
* *
7217343 TATTATTTGCATGATCATATA
1 T-TTATTTGCATTATTATATA
*
7217364 TTTAATTGCAT
1 TTTATTTGCAT
7217375 GTCTATTTGC
Statistics
Matches: 52, Mismatches: 13, Indels: 14
0.66 0.16 0.18
Matches are distributed among these distances:
20 38 0.73
21 13 0.25
22 1 0.02
ACGTcount: A:0.28, C:0.08, G:0.10, T:0.54
Consensus pattern (20 bp):
TTTATTTGCATTATTATATA
Found at i:7217483 original size:24 final size:24
Alignment explanation
Indices: 7217456--7217517 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
7217446 TATTTATTGC
*
7217456 ATGATTTTATATTTATTGCATGAT
1 ATGATATTATATTTATTGCATGAT
7217480 ATGATATTATATGTTATTGCATGAT
1 ATGATATTATAT-TTATTGCATGAT
*
7217505 -TAATATTATATTT
1 ATGATATTATATTT
7217518 GAATGATATT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
23 2 0.06
24 21 0.60
25 12 0.34
ACGTcount: A:0.32, C:0.03, G:0.11, T:0.53
Consensus pattern (24 bp):
ATGATATTATATTTATTGCATGAT
Found at i:7217486 original size:19 final size:19
Alignment explanation
Indices: 7217446--7217487 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
7217436 TTTGCATGGC
* *
7217446 TATTTATTGCATGATTTTA
1 TATTTATTGCATGATATGA
7217465 TATTTATTGCATGATATGA
1 TATTTATTGCATGATATGA
7217484 TATT
1 TATT
7217488 ATATGTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.29, C:0.05, G:0.12, T:0.55
Consensus pattern (19 bp):
TATTTATTGCATGATATGA
Found at i:7217516 original size:19 final size:18
Alignment explanation
Indices: 7217446--7217516 Score: 52
Period size: 19 Copynumber: 3.4 Consensus size: 18
7217436 TTTGCATGGC
*
7217446 TATTTATTGCATGATTTTA
1 TATTTATTGCATGA-TTAA
7217465 TATTTATTGCATGATATGATATTA
1 TATTTATTGCATG--AT--TA--A
7217489 TATGTTATTGCATGATTAA
1 TAT-TTATTGCATGATTAA
7217508 TATTATATT
1 TATT-TATT
7217517 TGAATGATAT
Statistics
Matches: 43, Mismatches: 1, Indels: 16
0.72 0.02 0.27
Matches are distributed among these distances:
18 1 0.02
19 21 0.49
20 1 0.02
21 3 0.07
22 1 0.02
23 2 0.05
24 4 0.09
25 10 0.23
ACGTcount: A:0.31, C:0.04, G:0.11, T:0.54
Consensus pattern (18 bp):
TATTTATTGCATGATTAA
Found at i:7217685 original size:60 final size:58
Alignment explanation
Indices: 7217580--7217693 Score: 149
Period size: 60 Copynumber: 1.9 Consensus size: 58
7217570 TTATACATTA
* * * *
7217580 TTACTAATATTTTTGTGTGATTATATTTGATTTCATGATTATATATTTGCATGAATGG
1 TTACTAATATATTTGTGTGATTATATTTGATTGCATGATAATATATTTACATGAATGG
*
7217638 TTACTAATATATTTGTGTGGTATTTTATATT-ATTGCATGATAATATATTTACATGA
1 TTACTAATATATTTGTGT-G-ATTATAT-TTGATTGCATGATAATATATTTACATGA
7217694 TATTATATAT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
58 17 0.35
59 1 0.02
60 28 0.58
61 2 0.04
ACGTcount: A:0.30, C:0.05, G:0.14, T:0.51
Consensus pattern (58 bp):
TTACTAATATATTTGTGTGATTATATTTGATTGCATGATAATATATTTACATGAATGG
Found at i:7217692 original size:16 final size:17
Alignment explanation
Indices: 7217673--7217712 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
7217663 TATATTATTG
7217673 CATGATA-ATATATTTA
1 CATGATATATATATTTA
7217689 CATGATATTATATATTTA
1 CATGATA-TATATATTTA
*
7217707 TATGAT
1 CATGAT
7217713 TATTATTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 7 0.33
18 14 0.67
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.47
Consensus pattern (17 bp):
CATGATATATATATTTA
Found at i:7217714 original size:16 final size:16
Alignment explanation
Indices: 7217673--7217719 Score: 51
Period size: 18 Copynumber: 2.9 Consensus size: 16
7217663 TATATTATTG
*
7217673 CATGATAATATATTTA
1 CATGATTATATATTTA
7217689 CATGATATTATATATTTA
1 CATG--ATTATATATTTA
*
7217707 TATGATTAT-TATT
1 CATGATTATATATT
7217720 ATTATTGCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 4 0.15
16 9 0.33
18 14 0.52
ACGTcount: A:0.38, C:0.04, G:0.06, T:0.51
Consensus pattern (16 bp):
CATGATTATATATTTA
Found at i:7217737 original size:20 final size:20
Alignment explanation
Indices: 7217665--7217753 Score: 61
Period size: 20 Copynumber: 4.8 Consensus size: 20
7217655 TGGTATTTTA
7217665 TATTATTGCATGATAA-TA-
1 TATTATTGCATGATAATTAT
*
7217683 TA-T-TTACATGAT-ATTAT
1 TATTATTGCATGATAATTAT
*
7217700 ATATT-TAT--ATGATTATTAT
1 -TATTAT-TGCATGATAATTAT
*
7217719 TATTATTGCATGATAATTAA
1 TATTATTGCATGATAATTAT
7217739 TA-TATTTGCATGATA
1 TATTA-TTGCATGATA
7217754 TTCTTGCACG
Statistics
Matches: 58, Mismatches: 3, Indels: 18
0.73 0.04 0.23
Matches are distributed among these distances:
15 1 0.02
16 10 0.17
17 1 0.02
18 14 0.24
19 10 0.17
20 22 0.38
ACGTcount: A:0.37, C:0.04, G:0.09, T:0.49
Consensus pattern (20 bp):
TATTATTGCATGATAATTAT
Found at i:7217819 original size:24 final size:24
Alignment explanation
Indices: 7217764--7217819 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
7217754 TTCTTGCACG
*
7217764 AATATT-TTAGCATGATATGGGTAT
1 AATATTATTA-CATGATATCGGTAT
*
7217788 GATATTATTACATGATATTCGGTAT
1 AATATTATTACATGATA-TCGGTAT
7217813 AAT-TTAT
1 AATATTAT
7217820 AATATATTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
24 16 0.59
25 11 0.41
ACGTcount: A:0.34, C:0.05, G:0.16, T:0.45
Consensus pattern (24 bp):
AATATTATTACATGATATCGGTAT
Found at i:7218833 original size:21 final size:21
Alignment explanation
Indices: 7218804--7218844 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7218794 TACTAACCTT
7218804 TTATATTATTCCTTATATATA
1 TTATATTATTCCTTATATATA
* *
7218825 TTATGTTATTCCTTGTATAT
1 TTATATTATTCCTTATATAT
7218845 GTTAACTAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.10, G:0.05, T:0.59
Consensus pattern (21 bp):
TTATATTATTCCTTATATATA
Found at i:7218940 original size:15 final size:14
Alignment explanation
Indices: 7218915--7218945 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
7218905 AGTGATTGCC
7218915 ATAAAACAATCTTA
1 ATAAAACAATCTTA
7218929 ATAAAGACAATCTTA
1 ATAAA-ACAATCTTA
7218944 AT
1 AT
7218946 TACATCCATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.55, C:0.13, G:0.03, T:0.29
Consensus pattern (14 bp):
ATAAAACAATCTTA
Found at i:7222691 original size:11 final size:12
Alignment explanation
Indices: 7222661--7222693 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
7222651 GAACATTTTA
7222661 ATCTTTTATGTT
1 ATCTTTTATGTT
7222673 AGTCTTTTAT-TT
1 A-TCTTTTATGTT
7222685 ATCTTTTAT
1 ATCTTTTAT
7222694 CATTTCAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 8 0.40
12 4 0.20
13 8 0.40
ACGTcount: A:0.18, C:0.09, G:0.06, T:0.67
Consensus pattern (12 bp):
ATCTTTTATGTT
Found at i:7223898 original size:15 final size:15
Alignment explanation
Indices: 7223878--7223907 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7223868 TTTGCTCATG
7223878 ATTGTTTAAATATTT
1 ATTGTTTAAATATTT
*
7223893 ATTGTTTAGATATTT
1 ATTGTTTAAATATTT
7223908 TACTTTCCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.10, T:0.60
Consensus pattern (15 bp):
ATTGTTTAAATATTT
Found at i:7225161 original size:43 final size:43
Alignment explanation
Indices: 7225097--7225240 Score: 186
Period size: 43 Copynumber: 3.4 Consensus size: 43
7225087 GAATGATCTC
7225097 ATTTTA-TTTTCTAAAAGTTTCAAAACCTCAGTTGTGGAAGAGT
1 ATTTTATTTTTC-AAAAGTTTCAAAACCTCAGTTGTGGAAGAGT
* * *
7225140 ATTTTATTTTTCAAAATTTTCAAAACCTTAGTTGTGGAAGAAT
1 ATTTTATTTTTCAAAAGTTTCAAAACCTCAGTTGTGGAAGAGT
* * *
7225183 ATTTTACTTTTC-AAAGTTTCAAAACCTCAGTTGTAGG-AGTGC
1 ATTTTATTTTTCAAAAGTTTCAAAACCTCAGTTGT-GGAAGAGT
*
7225225 ATTTTATTTTTAAAAA
1 ATTTTATTTTTCAAAA
7225241 AAAGTTTCAA
Statistics
Matches: 87, Mismatches: 11, Indels: 6
0.84 0.11 0.06
Matches are distributed among these distances:
42 32 0.37
43 50 0.57
44 5 0.06
ACGTcount: A:0.33, C:0.11, G:0.13, T:0.42
Consensus pattern (43 bp):
ATTTTATTTTTCAAAAGTTTCAAAACCTCAGTTGTGGAAGAGT
Found at i:7225557 original size:7 final size:6
Alignment explanation
Indices: 7225490--7225577 Score: 77
Period size: 6 Copynumber: 14.2 Consensus size: 6
7225480 ATTTTTAATC
* * ** *
7225490 TAATTT GAATTT GAATTT TTCTTT TAATTT TGATTT TAATTT TAATTT
1 TAATTT TAATTT TAATTT TAATTT TAATTT TAATTT TAATTT TAATTT
* * *
7225538 CAATTT GAATTTT TAATTTT TAATTTT TAATTT TGATTT T
1 TAATTT TAA-TTT TAA-TTT TAA-TTT TAATTT TAATTT T
7225578 TTGTTTTAAA
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
6 50 0.72
7 19 0.28
ACGTcount: A:0.27, C:0.02, G:0.06, T:0.65
Consensus pattern (6 bp):
TAATTT
Found at i:7226281 original size:21 final size:21
Alignment explanation
Indices: 7226267--7226435 Score: 90
Period size: 21 Copynumber: 7.6 Consensus size: 21
7226257 ATTTATTTGC
7226267 TTAATATATTTATTTACATGA
1 TTAATATATTTATTTACATGA
***
7226288 TTAATATATTTATTTGTGTGA
1 TTAATATATTTATTTACATGA
* * *
7226309 TTTAT-TAATATATTTGCATGATTA
1 TTAATAT-ATTTATTTACATG---A
*
7226333 TTAATATATTTATTTATATGA
1 TTAATATATTTATTTACATGA
* * * *
7226354 TTATATTTAATTCAATTGTATGATTA
1 TTA-ATAT-ATT-TATT-TA-CATGA
* *
7226380 TTAATATATTTAATTACTTGCTTA
1 TTAATATATTTATTTACATG---A
*
7226404 TTAATATATTTATTTGCATGA
1 TTAATATATTTATTTACATGA
7226425 TT-ATATATTTA
1 TTAATATATTTA
7226436 ATTGTATGTT
Statistics
Matches: 111, Mismatches: 24, Indels: 27
0.69 0.15 0.17
Matches are distributed among these distances:
20 10 0.09
21 40 0.36
22 5 0.05
23 5 0.05
24 39 0.35
25 6 0.05
26 6 0.05
ACGTcount: A:0.34, C:0.04, G:0.07, T:0.55
Consensus pattern (21 bp):
TTAATATATTTATTTACATGA
Found at i:7226344 original size:45 final size:47
Alignment explanation
Indices: 7226287--7226391 Score: 144
Period size: 47 Copynumber: 2.3 Consensus size: 47
7226277 TATTTACATG
* * *
7226287 ATTAATATATTTATTTGTGTGATT-TA-TTAATAT-ATTTGCATGATT
1 ATTAATATATTTATTTATATGATTATATTTAAT-TCAATTGCATGATT
*
7226332 ATTAATATATTTATTTATATGATTATATTTAATTCAATTGTATGATT
1 ATTAATATATTTATTTATATGATTATATTTAATTCAATTGCATGATT
7226379 ATTAATATATTTA
1 ATTAATATATTTA
7226392 ATTACTTGCT
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
45 22 0.42
46 3 0.06
47 28 0.53
ACGTcount: A:0.35, C:0.02, G:0.08, T:0.55
Consensus pattern (47 bp):
ATTAATATATTTATTTATATGATTATATTTAATTCAATTGCATGATT
Found at i:7226353 original size:24 final size:24
Alignment explanation
Indices: 7226267--7226428 Score: 119
Period size: 24 Copynumber: 7.0 Consensus size: 24
7226257 ATTTATTTGC
* *
7226267 TTAATATATTTA-TT-TA-CATGA
1 TTAATATATTTATTTGTATGATTA
*
7226288 TTAATATATTTATTTGTGTGATTTA
1 TTAATATATTTATTTGTATGA-TTA
*
7226313 TT-A-ATA--TATTTGCATGATTA
1 TTAATATATTTATTTGTATGATTA
*
7226333 TTAATATATTTATTTATATGATTA
1 TTAATATATTTATTTGTATGATTA
* * *
7226357 -T-ATTTAATTCAATTGTATGATTA
1 TTAATAT-ATTTATTTGTATGATTA
** *
7226380 TTAATATATTTAATTACT-TGCTTA
1 TTAATATATTT-ATTTGTATGATTA
*
7226404 TTAATATATTTATTTGCATGATTA
1 TTAATATATTTATTTGTATGATTA
7226428 T
1 T
7226429 ATATTTAATT
Statistics
Matches: 107, Mismatches: 21, Indels: 23
0.71 0.14 0.15
Matches are distributed among these distances:
20 5 0.05
21 22 0.21
22 8 0.07
23 22 0.21
24 40 0.37
25 10 0.09
ACGTcount: A:0.34, C:0.04, G:0.07, T:0.55
Consensus pattern (24 bp):
TTAATATATTTATTTGTATGATTA
Found at i:7226425 original size:71 final size:67
Alignment explanation
Indices: 7226267--7226449 Score: 205
Period size: 71 Copynumber: 2.7 Consensus size: 67
7226257 ATTTATTTGC
* * * *
7226267 TTAATATATTTATTTACATGATTA-ATATATTTATTTGTGTGATTTATTAATATATTTGCATGAT
1 TTAATATATTTATTTACATGATTATATATATTCAATTGTATGATTTATTAATATATTTACATGAT
7226331 TA
66 TA
* *
7226333 TTAATATATTTATTTATATGATTATATTTAATTCAATTGTATGA-TTATTAATATATTTAATTAC
1 TTAATATATTTATTTACATGATTATATAT-ATTCAATTGTATGATTTATTAATATA--T--TTAC
* *
7226397 TTGCTTA
61 ATGATTA
*
7226404 TTAATATATTTATTTGCATGATTATATAT-TT-AATTGTATG-TTTATT
1 TTAATATATTTATTTACATGATTATATATATTCAATTGTATGATTTATT
7226450 TGTATTATTA
Statistics
Matches: 99, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
66 23 0.23
67 14 0.14
68 25 0.25
69 3 0.03
71 34 0.34
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (67 bp):
TTAATATATTTATTTACATGATTATATATATTCAATTGTATGATTTATTAATATATTTACATGAT
TA
Found at i:7226448 original size:32 final size:32
Alignment explanation
Indices: 7226412--7226496 Score: 127
Period size: 32 Copynumber: 2.7 Consensus size: 32
7226402 TATTAATATA
*
7226412 TTTATTTGCATGATTATATATTTAATTGTATG
1 TTTATTTGCATGATTATATATTTAACTGTATG
* *
7226444 TTTATTTGTATTATTATATATTTAACTGTATG
1 TTTATTTGCATGATTATATATTTAACTGTATG
*
7226476 TTTATTTGCTTGATT-TATATT
1 TTTATTTGCATGATTATATATT
7226497 ATTATTTGCA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
31 6 0.13
32 41 0.87
ACGTcount: A:0.26, C:0.04, G:0.11, T:0.60
Consensus pattern (32 bp):
TTTATTTGCATGATTATATATTTAACTGTATG
Found at i:7226603 original size:3 final size:3
Alignment explanation
Indices: 7226595--7226619 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7226585 GCTTACATGG
7226595 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
7226620 ATTTATTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7226666 original size:25 final size:24
Alignment explanation
Indices: 7226638--7226685 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
7226628 ACATGGTTAT
*
7226638 TTATTACATGATATGATATTATATG
1 TTATTACATGAT-TAATATTATATG
*
7226663 TTATTGCATGATTAATATTATAT
1 TTATTACATGATTAATATTATAT
7226686 TTGAATGGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
TTATTACATGATTAATATTATATG
Found at i:7226862 original size:16 final size:16
Alignment explanation
Indices: 7226843--7226902 Score: 59
Period size: 18 Copynumber: 3.6 Consensus size: 16
7226833 TATATTATTG
7226843 CATGATAATATATTTA
1 CATGATAATATATTTA
7226859 CATGATATTATATATTTA
1 CATGATA--ATATATTTA
* *
7226877 TATGATTAT-TATTATTA
1 CATGATAATATA-T-TTA
7226894 CATGATAAT
1 CATGATAAT
7226903 TAATATATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
15 2 0.06
16 10 0.28
17 10 0.28
18 14 0.39
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.48
Consensus pattern (16 bp):
CATGATAATATATTTA
Found at i:7226866 original size:36 final size:36
Alignment explanation
Indices: 7226812--7226920 Score: 91
Period size: 36 Copynumber: 3.1 Consensus size: 36
7226802 GAATGGTTAT
** *
7226812 TAATATATTTGTAAGATATTTTATATTATTGCATGA
1 TAATATATTTACATGATATTTTATATTATTGCATGA
* *
7226848 TAATATATTTACATGATATTATATATTTATATG-ATTA
1 TAATATATTTACATGATATTTTATA-TTAT-TGCATGA
* * *
7226885 TTAT-TA-TTACATGATAATTAATA-TATTTGCATGA
1 TAATATATTTACATGATATTTTATATTA-TTGCATGA
7226919 TA
1 TA
7226921 TTCTTGCATG
Statistics
Matches: 58, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
33 4 0.07
34 5 0.09
35 14 0.24
36 23 0.40
37 10 0.17
38 2 0.03
ACGTcount: A:0.39, C:0.04, G:0.08, T:0.50
Consensus pattern (36 bp):
TAATATATTTACATGATATTTTATATTATTGCATGA
Found at i:7226917 original size:20 final size:19
Alignment explanation
Indices: 7226850--7226920 Score: 85
Period size: 18 Copynumber: 3.8 Consensus size: 19
7226840 TTGCATGATA
7226850 ATATATTTACATGAT-ATT
1 ATATATTTACATGATAATT
* *
7226868 ATATATTTATATGATTATT
1 ATATATTTACATGATAATT
7226887 AT-TA-TTACATGATAATT
1 ATATATTTACATGATAATT
*
7226904 AATATATTTGCATGATA
1 -ATATATTTACATGATA
7226921 TTCTTGCATG
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
17 11 0.24
18 18 0.40
19 7 0.16
20 9 0.20
ACGTcount: A:0.39, C:0.04, G:0.07, T:0.49
Consensus pattern (19 bp):
ATATATTTACATGATAATT
Found at i:7226943 original size:14 final size:13
Alignment explanation
Indices: 7226904--7226945 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 13
7226894 CATGATAATT
7226904 AATATATTTGCATG
1 AATAT-TTTGCATG
7226918 -ATATTCTTGCATG
1 AATATT-TTGCATG
7226931 AATATTTTAGCATG
1 AATATTTT-GCATG
7226945 A
1 A
7226946 TCTAGGCATG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 1 0.04
13 13 0.52
14 11 0.44
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (13 bp):
AATATTTTGCATG
Found at i:7239724 original size:17 final size:16
Alignment explanation
Indices: 7239699--7239733 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
7239689 TCCTTATCTT
7239699 TTTATTTTGATTATAG
1 TTTATTTTGATTATAG
*
7239715 TTTATATTTGGTTATAG
1 TTTAT-TTTGATTATAG
7239732 TT
1 TT
7239734 AATCAATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.23, C:0.00, G:0.14, T:0.63
Consensus pattern (16 bp):
TTTATTTTGATTATAG
Found at i:7246785 original size:128 final size:129
Alignment explanation
Indices: 7246645--7247210 Score: 585
Period size: 128 Copynumber: 4.4 Consensus size: 129
7246635 AAAAAGCTAA
*
7246645 TAATTTATTTTTTTAATATTTTATACAACGACAAAAAAGTTGTGACAAAAATCTGTTATCATATT
1 TAATTTATTTTTTTAATATTTTATACAACGACAAAAAAGTTGTTACAAAAAT-T-TTATCATATT
* *
7246710 TGGAATGAT-AAAAAATTATTGTTGCAAAAACTTATTTTATTTGAAATGATTTTTCAA-TGTTG-
64 TGTAATGATAAAAAAATTATTGTTACAAAAACTTATTTTATTTGAAATGATTTTTCAAGTGTTGC
7246772 T
129 T
* * *
7246773 TAATTTATTTTTTAAATATTTTATACAATGACAAAAAGGTTGTTACAAAAAGTTTTATCATATTT
1 TAATTTATTTTTTTAATATTTTATACAACGACAAAAAAGTTGTTACAAAAA-TTTTATCATATTT
* * * * *
7246838 GTAATGATAAAAAAATTATTATTATAAAAACCTATTTTATTTGCAATGATTTTTTAAGGTCGTTG
65 GTAATGATAAAAAAATTATTGTTACAAAAACTTATTTTATTTGAAATGATTTTTCAA-GT-GTTG
7246903 CT
128 CT
* * * * * ** * *
7246905 TAATTTATTTTTTTAATAATTTATATAACAACAAAAAACTTTTTATGAAATTTTTATCATATTTA
1 TAATTTATTTTTTTAATATTTTATACAACGACAAAAAAGTTGTTACAAAAATTTTATCATATTTG
* * * *** *
7246970 TAATAAT-AATAAATTGTTGTTGTGAAAACTTATTTTATTT-ACAATGATTTTTCAATATTGTTG
66 TAATGATAAAAAAATTATTGTTACAAAAACTTATTTTATTTGA-AATGATTTTTC-A-AGTGTTG
*
7247033 TT
128 CT
* * * * **
7247035 TAGTTTATTTTTTTAATATTTTATACAATGATAAAAAA--TATTACAAAAATTTCCTCATATTTG
1 TAATTTATTTTTTTAATATTTTATACAACGACAAAAAAGTTGTTACAAAAATTTTATCATATTTG
* * * *
7247098 TAACGATAAAAAAAATTATTGTTACGAAAACTTATTTTATTTGCAATGA-TTTTCAATGTCATTG
66 TAATGAT-AAAAAAATTATTGTTACAAAAACTTATTTTATTTGAAATGATTTTTCAA-GT-GTTG
7247162 CT
128 CT
* * *
7247164 TAATTTA--TTTTTAATATTGTTATTCAACGACAAAAAAATTATTACAA
1 TAATTTATTTTTTTAATATT-TTATACAACGACAAAAAAGTTGTTACAA
7247211 TACTTATATC
Statistics
Matches: 360, Mismatches: 61, Indels: 32
0.79 0.13 0.07
Matches are distributed among these distances:
127 30 0.08
128 130 0.36
129 16 0.04
130 117 0.32
131 25 0.07
132 42 0.12
ACGTcount: A:0.39, C:0.07, G:0.08, T:0.46
Consensus pattern (129 bp):
TAATTTATTTTTTTAATATTTTATACAACGACAAAAAAGTTGTTACAAAAATTTTATCATATTTG
TAATGATAAAAAAATTATTGTTACAAAAACTTATTTTATTTGAAATGATTTTTCAAGTGTTGCT
Found at i:7247017 original size:130 final size:131
Alignment explanation
Indices: 7246645--7247210 Score: 582
Period size: 130 Copynumber: 4.4 Consensus size: 131
7246635 AAAAAGCTAA
* *
7246645 TAATTTATTTTTTTAATATTTTATACAACGACAAAAAAGTTGTGACAAAAATCTGTTATCATATT
1 TAATTTATTTTTTTAATATTTTATACAACGACAAAAAAGTTGTTACAAAAAT-TTTTATCATATT
* * *
7246710 TGGAATGATAAAAAATTATTGTTGCAAAAACTTATTTTATTTGA-AATGATTTTTCAA--T-GTT
65 TGTAATAATAAAAAATTATTGTTACAAAAACTTATTTTATTT-ACAATGATTTTTCAATGTCGTT
7246771 G-T
129 GCT
* * * *
7246773 TAATTTATTTTTTAAATATTTTATACAATGACAAAAAGGTTGTTACAAAAAGTTTTATCATATTT
1 TAATTTATTTTTTTAATATTTTATACAACGACAAAAAAGTTGTTACAAAAATTTTTATCATATTT
* * * * * * *
7246838 GTAATGATAAAAAAATTATTATTATAAAAACCTATTTTATTTGCAATGATTTTTTAAGGTCGTTG
66 GTAATAAT-AAAAAATTATTGTTACAAAAACTTATTTTATTTACAATGATTTTTCAATGTCGTTG
7246903 CT
130 CT
* * * * * **
7246905 TAATTTATTTTTTTAATAATTTATATAACAACAAAAAACTTTTTA-TGAAATTTTTATCATATTT
1 TAATTTATTTTTTTAATATTTTATACAACGACAAAAAAGTTGTTACAAAAATTTTTATCATATTT
* * * *** * * *
7246969 ATAATAATAATAAATTGTTGTTGTGAAAACTTATTTTATTTACAATGATTTTTCAATATTGTTGT
66 GTAATAATAAAAAATTATTGTTACAAAAACTTATTTTATTTACAATGATTTTTCAATGTCGTTGC
7247034 T
131 T
* * * * **
7247035 TAGTTTATTTTTTTAATATTTTATACAATGATAAAAAA--TATTACAAAAA-TTTCCTCATATTT
1 TAATTTATTTTTTTAATATTTTATACAACGACAAAAAAGTTGTTACAAAAATTTTTATCATATTT
* * *
7247097 GTAACGATAA-AAAAAATTATTGTTACGAAAACTTATTTTATTTGCAATGA-TTTTCAATGTCAT
66 GT-A--ATAATAAAAAATTATTGTTACAAAAACTTATTTTATTTACAATGATTTTTCAATGTCGT
7247160 TGCT
128 TGCT
* * *
7247164 TAATTTA--TTTTTAATATTGTTATTCAACGACAAAAAAATTATTACAA
1 TAATTTATTTTTTTAATATT-TTATACAACGACAAAAAAGTTGTTACAA
7247211 TACTTATATC
Statistics
Matches: 362, Mismatches: 63, Indels: 24
0.81 0.14 0.05
Matches are distributed among these distances:
127 30 0.08
128 119 0.33
129 23 0.06
130 122 0.34
131 30 0.08
132 38 0.10
ACGTcount: A:0.39, C:0.07, G:0.08, T:0.46
Consensus pattern (131 bp):
TAATTTATTTTTTTAATATTTTATACAACGACAAAAAAGTTGTTACAAAAATTTTTATCATATTT
GTAATAATAAAAAATTATTGTTACAAAAACTTATTTTATTTACAATGATTTTTCAATGTCGTTGC
T
Found at i:7247112 original size:260 final size:258
Alignment explanation
Indices: 7246645--7247200 Score: 676
Period size: 260 Copynumber: 2.1 Consensus size: 258
7246635 AAAAAGCTAA
* * *
7246645 TAATTTATTTTTTTAATATTTTATACAACGACAAAAAAGTTGTGACAAAAATCTGTTATCATATT
1 TAATTTATTTTTTTAATAATTTATACAACAACAAAAAACTTGTGACAAAAATCTGTTATCATATT
* *
7246710 TGGAATGATAAAAAATTATTGTTGCAAAAACTTATTTTATTTGAAATGATTTTTCAATGTTGTTA
66 TAGAATAATAAAAAATTATTGTTGCAAAAACTTATTTTATTTGAAATGATTTTTCAATGTTGTTA
* * *
7246775 ATTTATTTTTTAAATATTTTATACAATGACAAAAAGGTTGTTACAAAAAGTTTTATCATATTTGT
131 ATTTATTTTTTAAATATTTTATACAATGACAAAAA-GATATTACAAAAAGTTTCATCATATTTGT
* * * *
7246840 AATGATAAAAAAATTATTATTATAAAAACCTATTTTATTTGCAATGATTTTTTAAGGTCGTTGCT
195 AACGATAAAAAAATTATTATTACAAAAACCTATTTTATTTGCAATGA-TTTTCAAGGTCATTGCT
* * * ** *
7246905 TAATTTATTTTTTTAATAATTTATATAACAACAAAAAACTTTTTA-TGAAAT-TTTTATCATATT
1 TAATTTATTTTTTTAATAATTTATACAACAACAAAAAACTTGTGACAAAAATCTGTTATCATATT
* * * **
7246968 TATAATAATAATAAATTGTTGTTGTGAAAACTTATTTTATTT-ACAATGATTTTTCAATATTGTT
66 TAGAATAATAAAAAATTATTGTTGCAAAAACTTATTTTATTTGA-AATGATTTTTC-A-A-TGTT
* * * *
7247032 GTTTAGTTTATTTTTTTAATATTTTATACAATGATAAAAA-ATATTACAAAAA-TTTCCTCATAT
127 G-TTAATTTATTTTTTAAATATTTTATACAATGACAAAAAGATATTACAAAAAGTTTCATCATAT
* * * *
7247095 TTGTAACGATAAAAAAAATTATTGTTACGAAAACTTATTTTATTTGCAATGATTTTCAATGTCAT
191 TTGTAACGAT-AAAAAAATTATTATTACAAAAACCTATTTTATTTGCAATGATTTTCAAGGTCAT
7247160 TGCT
255 TGCT
* * *
7247164 TAATTTA--TTTTTAATATTGTTATTCAACGACAAAAAA
1 TAATTTATTTTTTTAATAAT-TTATACAACAACAAAAAA
7247201 ATTATTACAA
Statistics
Matches: 254, Mismatches: 35, Indels: 16
0.83 0.11 0.05
Matches are distributed among these distances:
257 11 0.04
258 72 0.28
259 44 0.17
260 87 0.34
261 5 0.02
262 35 0.14
ACGTcount: A:0.39, C:0.07, G:0.08, T:0.46
Consensus pattern (258 bp):
TAATTTATTTTTTTAATAATTTATACAACAACAAAAAACTTGTGACAAAAATCTGTTATCATATT
TAGAATAATAAAAAATTATTGTTGCAAAAACTTATTTTATTTGAAATGATTTTTCAATGTTGTTA
ATTTATTTTTTAAATATTTTATACAATGACAAAAAGATATTACAAAAAGTTTCATCATATTTGTA
ACGATAAAAAAATTATTATTACAAAAACCTATTTTATTTGCAATGATTTTCAAGGTCATTGCT
Found at i:7251899 original size:17 final size:17
Alignment explanation
Indices: 7251877--7251911 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7251867 TCACGATTGT
7251877 TAAAATTACCTT-AATAA
1 TAAAATTA-CTTCAATAA
7251894 TAAAATTACTTCAATAA
1 TAAAATTACTTCAATAA
7251911 T
1 T
7251912 TATATTAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.18
17 14 0.82
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.37
Consensus pattern (17 bp):
TAAAATTACTTCAATAA
Found at i:7252218 original size:25 final size:25
Alignment explanation
Indices: 7252190--7252261 Score: 74
Period size: 28 Copynumber: 2.7 Consensus size: 25
7252180 TGTGTTAATT
7252190 TAATATAATAAATAATAATGTTATA
1 TAATATAATAAATAATAATGTTATA
*
7252215 TAATAAATTAATAAATAA-ATATGTTTTA
1 TAAT--A-TAATAAATAATA-ATGTTATA
*
7252243 TTATATAATAAATTAATAA
1 TAATATAATAAA-TAATAA
7252262 ATAATATAGT
Statistics
Matches: 39, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
25 11 0.28
26 5 0.13
27 3 0.08
28 20 0.51
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (25 bp):
TAATATAATAAATAATAATGTTATA
Found at i:7252227 original size:33 final size:33
Alignment explanation
Indices: 7252189--7252269 Score: 103
Period size: 33 Copynumber: 2.5 Consensus size: 33
7252179 TTGTGTTAAT
*
7252189 TTAATATAATAAATA-ATAATGTTATATAATAAA
1 TTAATA-AATAAATATATAATATTATATAATAAA
* **
7252222 TTAATAAATAAATATGTTTTATTATATAATAAA
1 TTAATAAATAAATATATAATATTATATAATAAA
7252255 TTAATAAAT-AATATA
1 TTAATAAATAAATATA
7252270 GTTATCATGT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
32 13 0.31
33 29 0.69
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (33 bp):
TTAATAAATAAATATATAATATTATATAATAAA
Found at i:7252972 original size:2 final size:2
Alignment explanation
Indices: 7252965--7252992 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7252955 TACATACTCA
7252965 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7252993 GAAATGAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7253971 original size:10 final size:10
Alignment explanation
Indices: 7253958--7253994 Score: 56
Period size: 10 Copynumber: 3.5 Consensus size: 10
7253948 CTGCCTTTGC
7253958 CTGCTTGCTT
1 CTGCTTGCTT
7253968 CTGCTTGCTT
1 CTGCTTGCTT
7253978 CTGCTTCTGCTT
1 CTGC-T-TGCTT
7253990 CTGCT
1 CTGCT
7253995 ACTGCTGTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 14 0.56
11 2 0.08
12 9 0.36
ACGTcount: A:0.00, C:0.32, G:0.19, T:0.49
Consensus pattern (10 bp):
CTGCTTGCTT
Found at i:7253972 original size:6 final size:6
Alignment explanation
Indices: 7253963--7254000 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
7253953 TTTGCCTGCT
*
7253963 TGCTTC TGC-T- TGCTTC TGCTTC TGCTTC TGCTAC TGCT
1 TGCTTC TGCTTC TGCTTC TGCTTC TGCTTC TGCTTC TGCT
7254001 GTTGGGGTCG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
4 3 0.10
5 2 0.07
6 24 0.83
ACGTcount: A:0.03, C:0.32, G:0.18, T:0.47
Consensus pattern (6 bp):
TGCTTC
Found at i:7256685 original size:18 final size:16
Alignment explanation
Indices: 7256655--7256692 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 16
7256645 TTCCATTGAG
7256655 AAAAAAAAAAAAAAAC
1 AAAAAAAAAAAAAAAC
7256671 AAAAACAAAACAAAAAAC
1 AAAAA-AAAA-AAAAAAC
7256689 AAAA
1 AAAA
7256693 CCCTAGGTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 5 0.25
17 4 0.20
18 11 0.55
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAAAAAAC
Found at i:7256693 original size:12 final size:12
Alignment explanation
Indices: 7256655--7256693 Score: 55
Period size: 11 Copynumber: 3.4 Consensus size: 12
7256645 TTCCATTGAG
*
7256655 AAAA-AAAAAAA
1 AAAACAAAAAAC
7256666 AAAAC-AAAAAC
1 AAAACAAAAAAC
7256677 AAAACAAAAAAC
1 AAAACAAAAAAC
7256689 AAAAC
1 AAAAC
7256694 CCTAGGTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
11 14 0.56
12 11 0.44
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAACAAAAAAC
Found at i:7260355 original size:7 final size:8
Alignment explanation
Indices: 7260336--7260375 Score: 53
Period size: 8 Copynumber: 4.8 Consensus size: 8
7260326 AATAATTTTT
7260336 TTAAAAAA
1 TTAAAAAA
7260344 TTAAAAAA
1 TTAAAAAA
*
7260352 TAAAAAAA
1 TTAAAAAA
7260360 TCCTAAAAAA
1 T--TAAAAAA
7260370 TTAAAA
1 TTAAAA
7260376 TTTTAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 21 0.75
10 7 0.25
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (8 bp):
TTAAAAAA
Found at i:7260544 original size:21 final size:22
Alignment explanation
Indices: 7260519--7260562 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
7260509 AAAATAAAAG
*
7260519 TTTAAGTATTTAATTA-TAAAT
1 TTTAAGTATTTAAATAGTAAAT
* *
7260540 TTTAATTCTTTAAATAGTAAAT
1 TTTAAGTATTTAAATAGTAAAT
7260562 T
1 T
7260563 GATAGAAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (22 bp):
TTTAAGTATTTAAATAGTAAAT
Found at i:7261113 original size:29 final size:28
Alignment explanation
Indices: 7261076--7261149 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 28
7261066 TTTTAAAAAA
*
7261076 TATTAATAATTATTTAAATTTTTAATATTT
1 TATT-ATAATTATTTAAA-TTTTAAAATTT
*
7261106 TATTATAATTAATTAAATTTTAAAATTT
1 TATTATAATTATTTAAATTTTAAAATTT
7261134 TAATTATTAATT-TTTA
1 T-ATTA-TAATTATTTA
7261150 TTTAATTAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
28 11 0.28
29 19 0.49
30 9 0.23
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (28 bp):
TATTATAATTATTTAAATTTTAAAATTT
Found at i:7261283 original size:21 final size:21
Alignment explanation
Indices: 7261237--7261286 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
7261227 AATTTTTATT
*
7261237 TAATAGAAATTTAATAAATAA
1 TAATAAAAATTTAATAAATAA
* * *
7261258 AAATAAAAATTTAATTAATTA
1 TAATAAAAATTTAATAAATAA
7261279 TAATAAAA
1 TAATAAAA
7261287 TAATAAAATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (21 bp):
TAATAAAAATTTAATAAATAA
Found at i:7262403 original size:25 final size:25
Alignment explanation
Indices: 7262374--7262447 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 25
7262364 TTATAAAACG
7262374 TATTAATTATAAAATATATTTAAAT
1 TATTAATTATAAAATATATTTAAAT
7262399 TATTAA-TATAACAATAT-TTTAATAT
1 TATTAATTATAA-AATATATTTAA-AT
* * * *
7262424 T-TTAATAATATACTTTATTTAAAT
1 TATTAATTATAAAATATATTTAAAT
7262448 GGGTAGATTG
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
24 19 0.46
25 22 0.54
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (25 bp):
TATTAATTATAAAATATATTTAAAT
Found at i:7262419 original size:24 final size:25
Alignment explanation
Indices: 7262374--7262430 Score: 75
Period size: 24 Copynumber: 2.3 Consensus size: 25
7262364 TTATAAAACG
7262374 TATTAATTATAAAATATATTTAA-AT
1 TATTAA-TATAAAATATATTTAATAT
7262399 TATTAATATAACAATAT-TTTAATAT
1 TATTAATATAA-AATATATTTAATAT
7262424 T-TTAATA
1 TATTAATA
7262431 ATATACTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
24 16 0.53
25 14 0.47
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (25 bp):
TATTAATATAAAATATATTTAATAT
Found at i:7263596 original size:22 final size:24
Alignment explanation
Indices: 7263571--7263632 Score: 65
Period size: 26 Copynumber: 2.6 Consensus size: 24
7263561 AAAATTAAAT
* *
7263571 ATTAGATATTATATA-A-TATTTG
1 ATTACATATTATATATATTATTTA
7263593 ATTACATATTATGTATATATTATTTA
1 ATTACATATTA--TATATATTATTTA
*
7263619 ATTATATATTATAT
1 ATTACATATTATAT
7263633 TTAATAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
22 10 0.30
24 7 0.21
25 1 0.03
26 15 0.45
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.53
Consensus pattern (24 bp):
ATTACATATTATATATATTATTTA
Found at i:7263616 original size:26 final size:26
Alignment explanation
Indices: 7263580--7263630 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
7263570 TATTAGATAT
*
7263580 TATATAATATTTGATTACATATTATG
1 TATATAATATTTAATTACATATTATG
* *
7263606 TATATATTATTTAATTATATATTAT
1 TATATAATATTTAATTACATATTAT
7263631 ATTTAATAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (26 bp):
TATATAATATTTAATTACATATTATG
Found at i:7264300 original size:2 final size:2
Alignment explanation
Indices: 7264293--7264317 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7264283 TACTAATGAT
7264293 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
7264318 TCGTCATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7268309 original size:177 final size:176
Alignment explanation
Indices: 7267955--7268384 Score: 503
Period size: 177 Copynumber: 2.4 Consensus size: 176
7267945 AAGCAAAGTT
*
7267955 ATTTTGTGCAACCAGATTGAAGACGTTTTAGGC-TACAGGTCATATAGTTA-ACATTTGGGTTTT
1 ATTTTGTGCAACCAGATTGAAGAC-TTTTTGGCTTACAGGTCATATAGTTACA-ATTTGGGTTTT
* * * * * *
7268018 GGAAAAAGGTTTAGCATTTTTTTTGTATTAAGTTTGAATTGTATGTAATGGTATTGTACAAAGTA
64 GGAAAAAGGTTTAACA-TTGTTTTGTATCAAGCTTGAATTGTATGGAATGCTATTGTACAAAGTA
* * * * *
7268083 CTTGTTTAGTTTTATAGTTTCAAGTTTTATATTAGCAAACATTCTAGTC
128 CTTGTCTAGTTTTATAGCTTCAAGTTTTATAGTAACAAACATGCTAGTC
* * * * * *
7268132 ATTTAGTGTAACCAAATTAAAGACTTTTTGGCTTACGGGTCTTATAGTTACAATTTGGGTTTTGG
1 ATTTTGTGCAACCAGATTGAAGACTTTTTGGCTTACAGGTCATATAGTTACAATTTGGGTTTTGG
* *
7268197 AAAAAGGTTTAACA-TGTTTTGT-TCCAGACTTGAATTGTATGGATTGCTATTGATACCAATA-T
66 AAAAAGGTTTAACATTGTTTTGTATCAAG-CTTGAATTGTATGGAATGCTATTG-TA-CAA-AGT
*
7268259 ACTTGTCTAGTTTTATAGCTTCAAGTTTTATAGTAACAATCATGCTAGTC
127 ACTTGTCTAGTTTTATAGCTTCAAGTTTTATAGTAACAAACATGCTAGTC
* * * **
7268309 ATTTTGTGCAACTAGATTGATGACTTTTTAGG-TTACAGGTCCTATAGTTACTTTTTGGGTTTTG
1 ATTTTGTGCAACCAGATTGAAGACTTTTT-GGCTTACAGGTCATATAGTTACAATTTGGGTTTTG
*
7268373 AAAAAAGGTTTA
65 GAAAAAGGTTTA
7268385 GCCTTTTTTT
Statistics
Matches: 214, Mismatches: 32, Indels: 14
0.82 0.12 0.05
Matches are distributed among these distances:
174 3 0.01
175 27 0.13
176 9 0.04
177 171 0.80
178 4 0.02
ACGTcount: A:0.28, C:0.10, G:0.19, T:0.42
Consensus pattern (176 bp):
ATTTTGTGCAACCAGATTGAAGACTTTTTGGCTTACAGGTCATATAGTTACAATTTGGGTTTTGG
AAAAAGGTTTAACATTGTTTTGTATCAAGCTTGAATTGTATGGAATGCTATTGTACAAAGTACTT
GTCTAGTTTTATAGCTTCAAGTTTTATAGTAACAAACATGCTAGTC
Found at i:7271074 original size:333 final size:335
Alignment explanation
Indices: 7270619--7271288 Score: 933
Period size: 333 Copynumber: 2.0 Consensus size: 335
7270609 CTTATTAATT
* * * * * **
7270619 TATTTTTAATAATAAATATTAATTAAATTGACATAAAATCTGTTACTTTGGTTGAAGCACCAAAT
1 TATTTTTAAAAATAAAAAATAATTAAATTGACATAAAATCGGTTACTTTAGTTGAAAAACCAAAT
*
7270684 ATTTTTCATATTTTTTGTCACCAATTTTAAACAATAATTTTGCAATAATTTGCATCCAACAAAAC
66 AATTTTCATATTTTTTGTCACCAATTTTAAACAATAATTTTGCAATAATTTGCATCCAACAAAAC
* *
7270749 TCACTTTATAATTTTATCACAATGTCATA-TTAGCCATCCTTAAAAATATAAATGA-AAAT-ATT
131 TCACTTCATAATTTTATCACAATGTCATATTTA-CCATCCTTAAAAATATAAAT-ACAAATAATA
* * *
7270811 TTATATATTTATTTATATA-AAAATATATTTAAAAATCTACTAAAAAAGTCAATTAATTTGATCA
194 TTATATATTTATTTATACATAAAATATATTTAAAAATCTACTAAAAAAGTCAATCAATTTGATAA
* * * *
7270875 ATTCAATTATTAGTTTTAAAAATTAAAAATTGATTGAATTAATTAATTAATTAAATTGCTTTATT
259 ATTCAATTATTACTTTTAAAAATTAAAAACTAATTG----AATTAATCAATTAAATTGCTTTATT
* *
7270940 TAACCAATTATTATCG
320 AAACCAATCATTATCG
* * * **
7270956 TATTTTTAAAAATAAAAAATAATTGATTTGGCATAAAATCGGTTACTTTAGTTGAAAAATTAAA-
1 TATTTTTAAAAATAAAAAATAATTAAATTGACATAAAATCGGTTACTTTAGTTGAAAAACCAAAT
* *
7271020 AATTTTCAT-TTTTTT-T-ACCAATTTTAAAGAATAATTTTGCAATAATTTGCATCCAATAAAAC
66 AATTTTCATATTTTTTGTCACCAATTTTAAACAATAATTTTGCAATAATTTGCATCCAACAAAAC
*
7271082 TCACTTCATAATTTTATCACAATGTCATATTTACCATTCTTAAAAATATAAATACAAATAAAAAT
131 TCACTTCATAATTTTATCACAATGTCATATTTACCATCCTTAAAAATATAAATACAAAT---AAT
* *
7271147 ATTATATATTTATTTATACATAAAATATATTTTAAAATCTATTAAAAAAGTCAATCAATTTGATA
193 ATTATATATTTATTTATACATAAAATATATTTAAAAATCTACTAAAAAAGTCAATCAATTTGATA
*
7271212 AATTCTATTATTACTTTTAAAAATTAAAAACTAATTGAATTAATCAATTAAATTGCTTTATTAAA
258 AATTCAATTATTACTTTTAAAAATTAAAAACTAATTGAATTAATCAATTAAATTGCTTTATTAAA
7271277 CCAATCATTATC
323 CCAATCATTATC
7271289 AAAATTAAAC
Statistics
Matches: 296, Mismatches: 30, Indels: 17
0.86 0.09 0.05
Matches are distributed among these distances:
332 1 0.00
333 95 0.32
334 41 0.14
335 6 0.02
336 8 0.03
337 72 0.24
338 73 0.25
ACGTcount: A:0.43, C:0.10, G:0.05, T:0.41
Consensus pattern (335 bp):
TATTTTTAAAAATAAAAAATAATTAAATTGACATAAAATCGGTTACTTTAGTTGAAAAACCAAAT
AATTTTCATATTTTTTGTCACCAATTTTAAACAATAATTTTGCAATAATTTGCATCCAACAAAAC
TCACTTCATAATTTTATCACAATGTCATATTTACCATCCTTAAAAATATAAATACAAATAATATT
ATATATTTATTTATACATAAAATATATTTAAAAATCTACTAAAAAAGTCAATCAATTTGATAAAT
TCAATTATTACTTTTAAAAATTAAAAACTAATTGAATTAATCAATTAAATTGCTTTATTAAACCA
ATCATTATCG
Found at i:7272206 original size:28 final size:28
Alignment explanation
Indices: 7272177--7272233 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
7272167 GTTTTTTTTT
*
7272177 TTTTTTTTG-TAAA-AAATTTGATAAAA
1 TTTTTATTGTTAAATAAATTTGATAAAA
*
7272203 TTTTTATTGTTAAATAAATTTGATTAAA
1 TTTTTATTGTTAAATAAATTTGATAAAA
7272231 TTT
1 TTT
7272234 GAATTATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 8 0.30
27 4 0.15
28 15 0.56
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (28 bp):
TTTTTATTGTTAAATAAATTTGATAAAA
Found at i:7273049 original size:32 final size:32
Alignment explanation
Indices: 7273007--7273114 Score: 148
Period size: 32 Copynumber: 3.4 Consensus size: 32
7272997 TAATAAATCT
*
7273007 ATTTTTTAAAATGATATGGAAATTTTTACATA
1 ATTTTTTAAAATGATATGGAAATTTTTACTTA
* *
7273039 ATATTTTAAAATGATATGG--ATTTTTATTTA
1 ATTTTTTAAAATGATATGGAAATTTTTACTTA
* * *
7273069 ATTTTTTGAACTGATATAGAAATTTTTACTTA
1 ATTTTTTAAAATGATATGGAAATTTTTACTTA
7273101 ATTTTTTAAAATGA
1 ATTTTTTAAAATGA
7273115 CATTTAATTT
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
30 24 0.38
32 40 0.62
ACGTcount: A:0.38, C:0.03, G:0.09, T:0.50
Consensus pattern (32 bp):
ATTTTTTAAAATGATATGGAAATTTTTACTTA
Found at i:7273127 original size:32 final size:32
Alignment explanation
Indices: 7273007--7273128 Score: 131
Period size: 32 Copynumber: 3.9 Consensus size: 32
7272997 TAATAAATCT
* *
7273007 ATTTTTTAAAATGATATGGAAATTTTTACATA
1 ATTTTTTAAAATGATATTGAAATTTTTACTTA
* * *
7273039 ATATTTTAAAATGATA-TG-GATTTTTATTTA
1 ATTTTTTAAAATGATATTGAAATTTTTACTTA
* * *
7273069 ATTTTTTGAACTGATATAGAAATTTTTACTTA
1 ATTTTTTAAAATGATATTGAAATTTTTACTTA
* * *
7273101 ATTTTTTAAAATGACATTTAATTTTTTA
1 ATTTTTTAAAATGATATTGAAATTTTTA
7273129 GAAATTTTAT
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
30 22 0.31
31 2 0.03
32 47 0.66
ACGTcount: A:0.37, C:0.03, G:0.08, T:0.52
Consensus pattern (32 bp):
ATTTTTTAAAATGATATTGAAATTTTTACTTA
Found at i:7274050 original size:15 final size:16
Alignment explanation
Indices: 7274023--7274052 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7274013 TAAAGATTTG
7274023 ATTAAATATTTTAAAA
1 ATTAAATATTTTAAAA
7274039 ATTAAA-ATTTTAAA
1 ATTAAATATTTTAAA
7274053 TAAAATTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
ATTAAATATTTTAAAA
Found at i:7277247 original size:6 final size:6
Alignment explanation
Indices: 7277244--7277278 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
7277234 AGCTTTTTCT
7277244 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTT
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTT
7277279 TGTAGGCTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (6 bp):
TTTTTG
Found at i:7277648 original size:18 final size:18
Alignment explanation
Indices: 7277611--7277650 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7277601 CAACATGTTA
* *
7277611 AATATAGTACTTATAAAT
1 AATATAGTACTAACAAAT
*
7277629 AATATAGTACTAACACAT
1 AATATAGTACTAACAAAT
7277647 AATA
1 AATA
7277651 AGGAGTTATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.53, C:0.10, G:0.05, T:0.33
Consensus pattern (18 bp):
AATATAGTACTAACAAAT
Found at i:7283941 original size:8 final size:8
Alignment explanation
Indices: 7283928--7283966 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
7283918 GATAGAGTGT
7283928 TTTTTTTA
1 TTTTTTTA
7283936 TTTTTTTA
1 TTTTTTTA
7283944 TTTTTTTA
1 TTTTTTTA
* * *
7283952 TGTTGTGA
1 TTTTTTTA
7283960 TTTTTTT
1 TTTTTTT
7283967 TGTTACGACA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.10, C:0.00, G:0.08, T:0.82
Consensus pattern (8 bp):
TTTTTTTA
Found at i:7284257 original size:20 final size:20
Alignment explanation
Indices: 7284232--7284277 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
7284222 GGGGGTTATT
*
7284232 GGCTATGACCTTAGGGGAAG
1 GGCTATGACCTTAGGAGAAG
7284252 GGCTATGACCTTAGGAGAAG
1 GGCTATGACCTTAGGAGAAG
*
7284272 TGCTAT
1 GGCTAT
7284278 AACATGTGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.35, T:0.24
Consensus pattern (20 bp):
GGCTATGACCTTAGGAGAAG
Found at i:7285059 original size:105 final size:104
Alignment explanation
Indices: 7284868--7285265 Score: 523
Period size: 105 Copynumber: 3.8 Consensus size: 104
7284858 CCGGAGATCA
* * * *
7284868 TACAAATCTTAACATCTTTGAATGCTCTTCCAATCATAGGCATTGAAACTTTAAAAATTTAAAAT
1 TACAAATCTCAACATCTTTGAATGCTCTTCCAATTAGAGGCATTGAAACTTTGAAAATTTAAAAT
*
7284933 GTTTTGCCCAAAAGTCTTGGAGATTATGCTCAGAAGTCT
66 GTTTTGCCCAAAGGTCTTGGAGATTATGCTCAGAAGTCT
* * * * *
7284972 CACAAATCTCAATATCTTTAAATGCTCATCTCAATTAGAGGCACTGAAACTTT-AAAATTTTAAA
1 TACAAATCTCAACATCTTTGAATGCTCTTC-CAATTAGAGGCATTGAAACTTTGAAAA-TTTAAA
* * *
7285036 ATATTTTACTCAAAGGTCTTGGAGATTATGCT-AGAAGCTCT
64 ATGTTTTGCCCAAAGGTCTTGGAGATTATGCTCAGAAG-TCT
* * *
7285077 TACAAATCTCAACATCTTTGAATGCTTTTCCAAATTAGAGGTATTAAAACTTTGAAAATTTAAAA
1 TACAAATCTCAACATCTTTGAATGCTCTTCC-AATTAGAGGCATTGAAACTTTGAAAATTTAAAA
** *
7285142 TGTTTTGCCCAAAGGTCTTAAAGATTATGC-CTGAAGGTCT
65 TGTTTTGCCCAAAGGTCTTGGAGATTATGCTCAGAA-GTCT
*
7285182 TACAAATCTCAACATCATTGAATGCTCTTCCCAATTAGAGGCATTGAAACTTTGAAAATTTAAAA
1 TACAAATCTCAACATCTTTGAATGCTCTT-CCAATTAGAGGCATTGAAACTTTGAAAATTTAAAA
* *
7285247 TGTTTTGCTCAAAGATCTT
65 TGTTTTGCCCAAAGGTCTT
7285266 AAAGACCTGG
Statistics
Matches: 254, Mismatches: 32, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
104 35 0.14
105 212 0.83
106 7 0.03
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (104 bp):
TACAAATCTCAACATCTTTGAATGCTCTTCCAATTAGAGGCATTGAAACTTTGAAAATTTAAAAT
GTTTTGCCCAAAGGTCTTGGAGATTATGCTCAGAAGTCT
Found at i:7285364 original size:22 final size:21
Alignment explanation
Indices: 7285339--7285399 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 21
7285329 AAGCACTAGT
*
7285339 TAATTTGGGTTTAGGTTCCAGC
1 TAATTTGGGTTTAGGTT-CAAC
*
7285361 TAATTTGGGCTTAGGTGTCAAC
1 TAATTTGGGTTTAGGT-TCAAC
* *
7285383 TAATCTGGGTTTGGGTT
1 TAATTTGGGTTTAGGTT
7285400 GATTTGAATG
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
21 1 0.03
22 31 0.94
23 1 0.03
ACGTcount: A:0.18, C:0.11, G:0.30, T:0.41
Consensus pattern (21 bp):
TAATTTGGGTTTAGGTTCAAC
Found at i:7285757 original size:26 final size:26
Alignment explanation
Indices: 7285702--7285757 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
7285692 CTGATACCAT
* *
7285702 GATGCAAATACAAATATCTTTCTTAT
1 GATGCAAATACAAATAGCTTTCTTAC
* *
7285728 GATGCAAATAGAAAT-GCTTTGGTTAC
1 GATGCAAATACAAATAGCTTT-CTTAC
7285754 GATG
1 GATG
7285758 TAGATGATGT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (26 bp):
GATGCAAATACAAATAGCTTTCTTAC
Found at i:7285929 original size:6 final size:7
Alignment explanation
Indices: 7285903--7285927 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7285893 TAAATATGAA
7285903 TTTTTGT
1 TTTTTGT
7285910 TTTTTGT
1 TTTTTGT
7285917 TTTTTGT
1 TTTTTGT
7285924 TTTT
1 TTTT
7285928 GTAGCATACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (7 bp):
TTTTTGT
Found at i:7286079 original size:80 final size:80
Alignment explanation
Indices: 7285923--7286089 Score: 201
Period size: 80 Copynumber: 2.1 Consensus size: 80
7285913 TTGTTTTTTG
* *
7285923 TTTTTGTAGCATACAGATCCAATATCTTTCTTATGATGCAAATATGAATGCAAGTAATGAAAATG
1 TTTTTGTAGCATACAGATCAAATATCTTTCTTATGATGCAAATATGAACGCAAGTAATGAAAATG
** *
7285988 TGACTATTTTTTTAA
66 AAACTACTTTTTTAA
** * * * *
7286003 TTTTTGTAGTGTACAGATTAAATATCTTTTTTATGATGCAAATATGAACGCAAGTGATGCAAATG
1 TTTTTGTAGCATACAGATCAAATATCTTTCTTATGATGCAAATATGAACGCAAGTAATGAAAATG
**
7286068 CAAAC-ACTTTTTTTT
66 -AAACTACTTTTTTAA
7286083 TTTTTGT
1 TTTTTGT
7286090 TTTTGCAACA
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
80 71 0.97
81 2 0.03
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (80 bp):
TTTTTGTAGCATACAGATCAAATATCTTTCTTATGATGCAAATATGAACGCAAGTAATGAAAATG
AAACTACTTTTTTAA
Found at i:7290920 original size:42 final size:42
Alignment explanation
Indices: 7290873--7290974 Score: 134
Period size: 42 Copynumber: 2.4 Consensus size: 42
7290863 CAATTCCTAT
* *
7290873 CCTTTCATTCCCTACTGC-TTCACCTACATGTTGATTTTTTAC
1 CCTTTCATTCCCTACTACATT-ACCTACATGTTGACTTTTTAC
* *
7290915 CCTTTCATTCCCTACTACATTAGCTATATGTTGACTTTTTAC
1 CCTTTCATTCCCTACTACATTACCTACATGTTGACTTTTTAC
* *
7290957 CCTTTTATTCCTTACTAC
1 CCTTTCATTCCCTACTAC
7290975 CTCAACTACA
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
42 51 0.96
43 2 0.04
ACGTcount: A:0.19, C:0.29, G:0.06, T:0.46
Consensus pattern (42 bp):
CCTTTCATTCCCTACTACATTACCTACATGTTGACTTTTTAC
Found at i:7300637 original size:21 final size:21
Alignment explanation
Indices: 7300613--7300652 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7300603 CAATTCTTTT
* *
7300613 TTTCTATTTTTTTTTAAAACC
1 TTTCTATTTTCTTTAAAAACC
*
7300634 TTTCTCTTTTCTTTAAAAA
1 TTTCTATTTTCTTTAAAAA
7300653 AACTTTGAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.15, G:0.00, T:0.60
Consensus pattern (21 bp):
TTTCTATTTTCTTTAAAAACC
Found at i:7305941 original size:17 final size:18
Alignment explanation
Indices: 7305919--7305953 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7305909 CCAACCTCAC
7305919 TTTTTTC-TCTATCTTTT
1 TTTTTTCTTCTATCTTTT
*
7305936 TTTTTTCTTCTCTCTTTT
1 TTTTTTCTTCTATCTTTT
7305954 GTTACACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTTTTCTTCTATCTTTT
Found at i:7307082 original size:25 final size:25
Alignment explanation
Indices: 7307053--7307100 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
7307043 CTTCGTGTCC
*
7307053 ATTTTTGTT-GTTTTGTTTTTTCATT
1 ATTTTT-TTAGTTTTGATTTTTCATT
*
7307078 ATTTTTTTATTTTTGATTTTTCA
1 ATTTTTTTAGTTTTGATTTTTCA
7307101 CTTTTTAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 2 0.10
25 18 0.90
ACGTcount: A:0.12, C:0.04, G:0.08, T:0.75
Consensus pattern (25 bp):
ATTTTTTTAGTTTTGATTTTTCATT
Found at i:7308078 original size:40 final size:40
Alignment explanation
Indices: 7308006--7308213 Score: 197
Period size: 40 Copynumber: 5.2 Consensus size: 40
7307996 TTATTGGAGT
* * * *
7308006 TTTTACCTAGAGGTCTTGGAAATCATTGAAAAATTTAAGA
1 TTTTGCCTGGAGGTCTTGAAAATCATTTAAAAATTTAAGA
*
7308046 TTTTGCCTGGAGGTCTTGAAAATCGTTTAAAAATTTAA-A
1 TTTTGCCTGGAGGTCTTGAAAATCATTTAAAAATTTAAGA
* * *
7308085 GTTTTGCTTGAAGGTCTTGAAGAA-CATTAAAAAATTTAAGA
1 -TTTTGCCTGGAGGTCTTGAA-AATCATTTAAAAATTTAAGA
* * * * * *
7308126 TTTTACCTGAAGGTCTTGAAAATCATGTAAGAAATATGAGG
1 TTTTGCCTGGAGGTCTTGAAAATCATTTAA-AAATTTAAGA
* * * *
7308167 TTTTGCTTGGAGGGTTTTGAAAA-CATTCAAAAATTTAAAA
1 TTTTGCCTGGA-GGTCTTGAAAATCATTTAAAAATTTAAGA
7308207 TTTTGCC
1 TTTTGCC
7308214 CAAAGGTTTT
Statistics
Matches: 135, Mismatches: 27, Indels: 12
0.78 0.16 0.07
Matches are distributed among these distances:
39 3 0.02
40 99 0.73
41 23 0.17
42 10 0.07
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.36
Consensus pattern (40 bp):
TTTTGCCTGGAGGTCTTGAAAATCATTTAAAAATTTAAGA
Found at i:7308118 original size:80 final size:81
Alignment explanation
Indices: 7308016--7308213 Score: 247
Period size: 80 Copynumber: 2.4 Consensus size: 81
7308006 TTTTACCTAG
* * * * *
7308016 AGGTCTTGGAAATCATTGAAAAATTTAAGATTTTGCCTGGAGGTCTTGAAAATCGTTTAA-AAAT
1 AGGTCTT-GAAAACATTAAAAAATTTAAGATTTTGCCTGAAGGTCTTGAAAATCATGTAAGAAAT
*
7308080 TTAAAGTTTTGCTT-GA
65 ATAAAGTTTTGCTTGGA
*
7308096 AGGTCTTGAAGAACATTAAAAAATTTAAGATTTTACCTGAAGGTCTTGAAAATCATGTAAGAAAT
1 AGGTCTTGAA-AACATTAAAAAATTTAAGATTTTGCCTGAAGGTCTTGAAAATCATGTAAGAAAT
* *
7308161 ATGAGGTTTTGCTTGGA
65 ATAAAGTTTTGCTTGGA
* * * *
7308178 GGGTTTTGAAAACATTCAAAAATTTAAAATTTTGCC
1 AGGTCTTGAAAACATTAAAAAATTTAAGATTTTGCC
7308214 CAAAGGTTTT
Statistics
Matches: 101, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 3 0.03
80 50 0.50
81 38 0.38
82 10 0.10
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.35
Consensus pattern (81 bp):
AGGTCTTGAAAACATTAAAAAATTTAAGATTTTGCCTGAAGGTCTTGAAAATCATGTAAGAAATA
TAAAGTTTTGCTTGGA
Found at i:7308252 original size:81 final size:81
Alignment explanation
Indices: 7308016--7308253 Score: 189
Period size: 81 Copynumber: 3.0 Consensus size: 81
7308006 TTTTACCTAG
* * * * *** * *
7308016 AGGTCTTGGAA-ATCATTGAAAAATTTAAGATTTTGCCTGGAGGTCTTGAAAATCGTTTAA-AAA
1 AGGTCTT-GAAGAACATTAAAAAATTTAAAATTTTACCCAAAGGTCTTGAAAATCATGTAAGAAA
* *
7308079 TTTAAAG-TTTTGCTTGA
65 TAT-GAGCTTTTGCTTGA
* **
7308096 AGGTCTTGAAGAACATTAAAAAATTTAAGATTTTACCTGAAGGTCTTGAAAATCATGTAAGAAAT
1 AGGTCTTGAAGAACATTAAAAAATTTAAAATTTTACCCAAAGGTCTTGAAAATCATGTAAGAAAT
*
7308161 ATGAGGTTTTGCTTGGA
66 ATGAGCTTTTGCTT-GA
* * * * * * * *
7308178 GGGTTTTGAA-AACATTCAAAAATTTAAAATTTTGCCCAAAGGTTTTTTAAAATCATTTCA-AAA
1 AGGTCTTGAAGAACATTAAAAAATTTAAAATTTTACCCAAAGG-TCTTGAAAATCATGTAAGAAA
*
7308241 TCTGAGCTTTTGC
65 TATGAGCTTTTGC
7308254 CCAAATGTCT
Statistics
Matches: 132, Mismatches: 21, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
79 3 0.02
80 52 0.39
81 54 0.41
82 23 0.17
ACGTcount: A:0.36, C:0.10, G:0.18, T:0.36
Consensus pattern (81 bp):
AGGTCTTGAAGAACATTAAAAAATTTAAAATTTTACCCAAAGGTCTTGAAAATCATGTAAGAAAT
ATGAGCTTTTGCTTGA
Found at i:7309834 original size:9 final size:9
Alignment explanation
Indices: 7309820--7309879 Score: 50
Period size: 9 Copynumber: 6.6 Consensus size: 9
7309810 CCACATTCAT
7309820 TTTTTTTTC
1 TTTTTTTTC
*
7309829 TTTTTTTTG
1 TTTTTTTTC
7309838 TTTGTTTATTC
1 TTT-TTT-TTC
*
7309849 TATTTTTT-
1 TTTTTTTTC
*
7309857 TTCTTTTTC
1 TTTTTTTTC
* *
7309866 TTCTTCTTC
1 TTTTTTTTC
7309875 TTTTT
1 TTTTT
7309880 ATTATTACAC
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
8 6 0.15
9 25 0.61
10 6 0.15
11 4 0.10
ACGTcount: A:0.03, C:0.12, G:0.03, T:0.82
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:7310329 original size:33 final size:33
Alignment explanation
Indices: 7310260--7310414 Score: 90
Period size: 33 Copynumber: 4.7 Consensus size: 33
7310250 TATTATTCCC
* * * *
7310260 TTCTTTTCTCATTT-TTTTCCTTTTTTTCTTTGT
1 TTCTTTTCT-TTTTCTTTTCCTTTTCTTATTTTT
7310293 TTCTTTTCTTTTTCTTTTCCTTTTCTTATTTTT
1 TTCTTTTCTTTTTCTTTTCCTTTTCTTATTTTT
* *
7310326 TTC---TC-TTTTCGGTTCTCCTTGTTCTT-TTCATT
1 TTCTTTTCTTTTTC--TTTTCCTT-TTCTTATT-TTT
* * * *
7310358 TTCTTTCCCCTTTATCTTGTCCATTT-TTATTTTT
1 TTCTTT--TCTTTTTCTTTTCCTTTTCTTATTTTT
*
7310392 TTATCTTTCTTTTTCTTTTCCTT
1 TTCT-TTTCTTTTTCTTTTCCTT
7310415 CGAGTGGATT
Statistics
Matches: 93, Mismatches: 16, Indels: 26
0.69 0.12 0.19
Matches are distributed among these distances:
29 5 0.05
30 2 0.02
31 9 0.10
32 13 0.14
33 40 0.43
34 7 0.08
35 6 0.06
36 6 0.06
37 1 0.01
38 4 0.04
ACGTcount: A:0.05, C:0.21, G:0.03, T:0.71
Consensus pattern (33 bp):
TTCTTTTCTTTTTCTTTTCCTTTTCTTATTTTT
Found at i:7310411 original size:11 final size:11
Alignment explanation
Indices: 7310292--7310335 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
7310282 TTTTTCTTTG
7310292 TTTCTTTTCTT
1 TTTCTTTTCTT
*
7310303 TTTCTTTTCCT
1 TTTCTTTTCTT
*
7310314 TTTCTTATTTTT
1 TTTCTT-TTCTT
7310326 TTCTCTTTTC
1 TT-TCTTTTC
7310336 GGTTCTCCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
11 16 0.59
12 7 0.26
13 4 0.15
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTCTTTTCTT
Found at i:7326086 original size:24 final size:24
Alignment explanation
Indices: 7326033--7326088 Score: 87
Period size: 25 Copynumber: 2.3 Consensus size: 24
7326023 GAAATGAAAG
7326033 AGAAAAAGCACTCATTTTACAAAT
1 AGAAAAAGCACTCATTTTACAAAT
7326057 AAGAAAAAGCACTCATTTTACAAACT
1 -AGAAAAAGCACTCATTTTACAAA-T
7326083 -GAAAAA
1 AGAAAAA
7326089 AAATTTGTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
24 6 0.20
25 23 0.77
26 1 0.03
ACGTcount: A:0.54, C:0.16, G:0.09, T:0.21
Consensus pattern (24 bp):
AGAAAAAGCACTCATTTTACAAAT
Found at i:7326089 original size:25 final size:25
Alignment explanation
Indices: 7326033--7326080 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
7326023 GAAATGAAAG
7326033 AGAAAAAGCACTCATTTTACAAATA
1 AGAAAAAGCACTCATTTTACAAATA
7326058 AGAAAAAGCACTCATTTTACAAA
1 AGAAAAAGCACTCATTTTACAAA
7326081 CTGAAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.52, C:0.17, G:0.08, T:0.23
Consensus pattern (25 bp):
AGAAAAAGCACTCATTTTACAAATA
Found at i:7328239 original size:210 final size:210
Alignment explanation
Indices: 7327877--7328298 Score: 835
Period size: 210 Copynumber: 2.0 Consensus size: 210
7327867 AAAATTAAAT
7327877 TCAAACTAAATAAAATTTTTAAGTTTGCCATCCAGTATATTTATCTAAAAAAAAAGAGATATTAT
1 TCAAACTAAATAAAATTTTTAAGTTTGCCATCCAGTATATTTATCTAAAAAAAAAGAGATATTAT
7327942 CGAAGTGCAAAGAAGCTATAGCTTTTGTTTAGTTGGCAGAATTTCAATCTGAAGGAAATAAACGA
66 CGAAGTGCAAAGAAGCTATAGCTTTTGTTTAGTTGGCAGAATTTCAATCTGAAGGAAATAAACGA
7328007 ATAATTAACTTTAATTAGCAACTTGAATAACCAAGCTAGCTAATTCAGATAGGAATATTTAAACA
131 ATAATTAACTTTAATTAGCAACTTGAATAACCAAGCTAGCTAATTCAGATAGGAATATTTAAACA
7328072 AACTAAGAGAAATTA
196 AACTAAGAGAAATTA
7328087 TCAAACTAAATAAAATTTTTAAGTTTGCCATCCAGTATATTTATCTAAAAAAAAAGAGATATTAT
1 TCAAACTAAATAAAATTTTTAAGTTTGCCATCCAGTATATTTATCTAAAAAAAAAGAGATATTAT
7328152 CGAAGTGCAAAGAAGCTATAGCTTTTGTTTAGTTGGCAGAATTTCAATCTGAAGGAAATAAACGA
66 CGAAGTGCAAAGAAGCTATAGCTTTTGTTTAGTTGGCAGAATTTCAATCTGAAGGAAATAAACGA
*
7328217 ATAATTAACTTTAATTAGCAACTTGAATAACCAAGCTAGCTAATTCATATAGGAATATTTAAACA
131 ATAATTAACTTTAATTAGCAACTTGAATAACCAAGCTAGCTAATTCAGATAGGAATATTTAAACA
7328282 AACTAAGAGAAATTA
196 AACTAAGAGAAATTA
7328297 TC
1 TC
7328299 TTGAACGTCA
Statistics
Matches: 211, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
210 211 1.00
ACGTcount: A:0.44, C:0.12, G:0.14, T:0.31
Consensus pattern (210 bp):
TCAAACTAAATAAAATTTTTAAGTTTGCCATCCAGTATATTTATCTAAAAAAAAAGAGATATTAT
CGAAGTGCAAAGAAGCTATAGCTTTTGTTTAGTTGGCAGAATTTCAATCTGAAGGAAATAAACGA
ATAATTAACTTTAATTAGCAACTTGAATAACCAAGCTAGCTAATTCAGATAGGAATATTTAAACA
AACTAAGAGAAATTA
Found at i:7328466 original size:4 final size:4
Alignment explanation
Indices: 7328459--7328487 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
7328449 AGAGAGAGAG
7328459 AGAC AGAC AGAC AGAC AGAC AGAC AGAC A
1 AGAC AGAC AGAC AGAC AGAC AGAC AGAC A
7328488 TGCACACTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.52, C:0.24, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAC
Found at i:7328590 original size:2 final size:2
Alignment explanation
Indices: 7328583--7328613 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7328573 TTTTTGAACC
7328583 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7328614 CAAGTCAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7331183 original size:24 final size:24
Alignment explanation
Indices: 7331156--7331205 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
7331146 ACTATGCCAT
7331156 AAAGATAAATGATTGCATCAAAAG
1 AAAGATAAATGATTGCATCAAAAG
* *
7331180 AAAGATAATTGATTGCGTCAAAAG
1 AAAGATAAATGATTGCATCAAAAG
7331204 AA
1 AA
7331206 GGAGGACAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.52, C:0.08, G:0.18, T:0.22
Consensus pattern (24 bp):
AAAGATAAATGATTGCATCAAAAG
Found at i:7333712 original size:31 final size:31
Alignment explanation
Indices: 7333677--7333759 Score: 91
Period size: 31 Copynumber: 2.7 Consensus size: 31
7333667 TTTGTATTAG
*
7333677 AAAAATTAAATTTCAAATTTCATGCGTA-TAT
1 AAAAATTAAATTTCAAATTTCATACG-AGTAT
*
7333708 AAAAATTAAAATTT-AAATTTCGTACGAGTAT
1 AAAAATT-AAATTTCAAATTTCATACGAGTAT
*
7333739 AGGAAA-TAAATTTCAAATTTC
1 A-AAAATTAAATTTCAAATTTC
7333760 GTATAAATAT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
30 7 0.16
31 29 0.64
32 9 0.20
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.36
Consensus pattern (31 bp):
AAAAATTAAATTTCAAATTTCATACGAGTAT
Found at i:7333869 original size:20 final size:21
Alignment explanation
Indices: 7333846--7333887 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7333836 TCACATCAAT
*
7333846 AAAATCAA-CGTCACATTAGC
1 AAAATCAATCGCCACATTAGC
*
7333866 AAAATCAATGGCCACATTAGC
1 AAAATCAATCGCCACATTAGC
7333887 A
1 A
7333888 TTTTAACAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.45, C:0.24, G:0.12, T:0.19
Consensus pattern (21 bp):
AAAATCAATCGCCACATTAGC
Found at i:7335090 original size:2 final size:2
Alignment explanation
Indices: 7335083--7335114 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7335073 TTTTATATTA
7335083 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7335115 TGGGCCAACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7336210 original size:14 final size:15
Alignment explanation
Indices: 7336181--7336213 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
7336171 ACTTTTCAAG
7336181 AAAAAAATAATTAATT
1 AAAAAAATAA-TAATT
7336197 AAAAAAATAA-AATT
1 AAAAAAATAATAATT
7336211 AAA
1 AAA
7336214 TGAAAATATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
16 10 0.59
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (15 bp):
AAAAAAATAATAATT
Found at i:7337142 original size:22 final size:20
Alignment explanation
Indices: 7337085--7337138 Score: 67
Period size: 19 Copynumber: 2.7 Consensus size: 20
7337075 TATAATCAAA
*
7337085 TGAATAATCAATTATAATAT
1 TGAATAATTAATTATAATAT
7337105 T--ATAATTAAATTATAATTAT
1 TGAATAATT-AATTATAA-TAT
7337125 TGAATAATTAATTA
1 TGAATAATTAATTA
7337139 ATAAATTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
18 5 0.17
19 8 0.28
20 5 0.17
21 5 0.17
22 6 0.21
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (20 bp):
TGAATAATTAATTATAATAT
Found at i:7337422 original size:10 final size:9
Alignment explanation
Indices: 7337385--7337422 Score: 58
Period size: 9 Copynumber: 4.0 Consensus size: 9
7337375 TTTATAAATT
7337385 ATTAATTTA
1 ATTAATTTA
7337394 ATTAATTTA
1 ATTAATTTA
7337403 ATTAATTTTA
1 ATTAA-TTTA
7337413 ATTCAATTTA
1 ATT-AATTTA
7337423 TGAGTCATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 14 0.52
10 11 0.41
11 2 0.07
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (9 bp):
ATTAATTTA
Found at i:7340034 original size:30 final size:28
Alignment explanation
Indices: 7339993--7340053 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 28
7339983 AAAAATAATT
*
7339993 TTTTTAATATTTTATAATTTTTTAAAAATA
1 TTTTTAATATTTTAT-A-TTTCTAAAAATA
*
7340023 TTTTTATTATTTTATATTTCTAAAAATA
1 TTTTTAATATTTTATATTTCTAAAAATA
7340051 TTT
1 TTT
7340054 AACATTATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 14 0.48
29 1 0.03
30 14 0.48
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (28 bp):
TTTTTAATATTTTATATTTCTAAAAATA
Found at i:7346449 original size:11 final size:11
Alignment explanation
Indices: 7346427--7346456 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
7346417 TAAAAAAATC
7346427 TCTTTCTTATTT
1 TCTTT-TTATTT
7346439 TCTTTTTATTT
1 TCTTTTTATTT
7346450 TCTTTTT
1 TCTTTTT
7346457 TTAAGGCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.07, C:0.13, G:0.00, T:0.80
Consensus pattern (11 bp):
TCTTTTTATTT
Found at i:7348310 original size:16 final size:16
Alignment explanation
Indices: 7348291--7348331 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
7348281 TGAATATGCA
*
7348291 AATGAATGAACATATG
1 AATGAATGAACAAATG
7348307 AATGAATGAACAAATG
1 AATGAATGAACAAATG
*
7348323 AATAAATGA
1 AATGAATGA
7348332 TAAAGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.56, C:0.05, G:0.17, T:0.22
Consensus pattern (16 bp):
AATGAATGAACAAATG
Found at i:7356433 original size:12 final size:11
Alignment explanation
Indices: 7356411--7356441 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
7356401 AAACTAAAAA
7356411 AAAATTAATAT
1 AAAATTAATAT
7356422 AAAATTATATAT
1 AAAATTA-ATAT
7356434 AAAATTAA
1 AAAATTAA
7356442 GAAAATAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
AAAATTAATAT
Found at i:7356734 original size:2 final size:2
Alignment explanation
Indices: 7356727--7356765 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
7356717 AATCACTTCT
* * *
7356727 TA TA TA TA AA TA AA TA TA TG TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7356766 TTGAACTTCG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (2 bp):
TA
Found at i:7357279 original size:72 final size:72
Alignment explanation
Indices: 7357168--7357303 Score: 236
Period size: 72 Copynumber: 1.9 Consensus size: 72
7357158 CAAACACAAA
* * * *
7357168 CACCCATCTTTGCACTTAAATCATATCTTATTTTTACATATATAACAGGAAAAATTAAATAAGTA
1 CACCCATCTTTGCACTCAAATCATATCTTACTTTCACATATATAACAGGAAAAATTAAACAAGTA
7357233 ACACAGG
66 ACACAGG
7357240 CACCCATCTTTGCACTCAAATCATATCTTACTTTCACATATATAACAGGAAAAATTAAACAAGT
1 CACCCATCTTTGCACTCAAATCATATCTTACTTTCACATATATAACAGGAAAAATTAAACAAGT
7357304 TCTAAAGCAC
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 60 1.00
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (72 bp):
CACCCATCTTTGCACTCAAATCATATCTTACTTTCACATATATAACAGGAAAAATTAAACAAGTA
ACACAGG
Found at i:7358815 original size:2 final size:2
Alignment explanation
Indices: 7358808--7358844 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
7358798 AGGCCTTGGC
*
7358808 TA TA TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7358845 CTCATCACTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7360040 original size:58 final size:57
Alignment explanation
Indices: 7359934--7360050 Score: 139
Period size: 58 Copynumber: 2.0 Consensus size: 57
7359924 ATTTATTTTA
7359934 ATTTAATATAAATATATAAAAACTATTTTAAACTTTTAATTATAATACACAATTACAT
1 ATTTAATATAAATATATAAAAACTATTTTAAACTTTTAATTATAATACAC-ATTACAT
* * * * * *
7359992 ATTTAATAT-AATCATATAAAAATTGTTTT-AATTATTTATTTATGATACACATTTCAT
1 ATTTAATATAAAT-ATATAAAAACTATTTTAAACT-TTTAATTATAATACACATTACAT
7360049 AT
1 AT
7360051 GCAATTATTT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
57 14 0.27
58 37 0.73
ACGTcount: A:0.45, C:0.08, G:0.02, T:0.45
Consensus pattern (57 bp):
ATTTAATATAAATATATAAAAACTATTTTAAACTTTTAATTATAATACACATTACAT
Found at i:7360658 original size:44 final size:44
Alignment explanation
Indices: 7360608--7360693 Score: 154
Period size: 44 Copynumber: 2.0 Consensus size: 44
7360598 CGAACTATCG
7360608 ATTTCAGATTGATCTGCATTTAAGTTAATTTAGATTCTGAATCA
1 ATTTCAGATTGATCTGCATTTAAGTTAATTTAGATTCTGAATCA
* *
7360652 ATTTCAGATTGATCTGGATTTAATTTAATTTAGATTCTGAAT
1 ATTTCAGATTGATCTGCATTTAAGTTAATTTAGATTCTGAAT
7360694 AATCGATTTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.45
Consensus pattern (44 bp):
ATTTCAGATTGATCTGCATTTAAGTTAATTTAGATTCTGAATCA
Found at i:7360676 original size:22 final size:22
Alignment explanation
Indices: 7360608--7360677 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
7360598 CGAACTATCG
*
7360608 ATTTCAGATTGATCTGCATTTA
1 ATTTCAGATTGATCTGGATTTA
* * *
7360630 AGTT-A-ATTTAGATTCT-GAATCA
1 ATTTCAGA-TT-GA-TCTGGATTTA
7360652 ATTTCAGATTGATCTGGATTTA
1 ATTTCAGATTGATCTGGATTTA
7360674 ATTT
1 ATTT
7360678 AATTTAGATT
Statistics
Matches: 35, Mismatches: 7, Indels: 12
0.65 0.13 0.22
Matches are distributed among these distances:
20 1 0.03
21 6 0.17
22 21 0.60
23 6 0.17
24 1 0.03
ACGTcount: A:0.30, C:0.10, G:0.14, T:0.46
Consensus pattern (22 bp):
ATTTCAGATTGATCTGGATTTA
Found at i:7362526 original size:4 final size:4
Alignment explanation
Indices: 7362519--7362561 Score: 77
Period size: 4 Copynumber: 10.5 Consensus size: 4
7362509 ACAAAAAAAA
7362519 AAAT AAAT AAAT AAAT AAAT AAAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT -AAAT AAAT AAAT AAAT AAAT AA
7362562 CAGATGAAGG
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 34 0.89
5 4 0.11
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:7362542 original size:21 final size:21
Alignment explanation
Indices: 7362518--7362561 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
7362508 TACAAAAAAA
7362518 AAAATAAATAAATAAATAAAT
1 AAAATAAATAAATAAATAAAT
7362539 AAAATAAATAAATAAATAAAT
1 AAAATAAATAAATAAATAAAT
7362560 AA
1 AA
7362562 CAGATGAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (21 bp):
AAAATAAATAAATAAATAAAT
Found at i:7364305 original size:103 final size:103
Alignment explanation
Indices: 7364123--7364333 Score: 341
Period size: 103 Copynumber: 2.0 Consensus size: 103
7364113 TCATTCACAG
*
7364123 TTCATATTCTAAACTTACTAAAAATTTGCCATCGCATAATCCCCTAACATATTTTTTAAACTTCT
1 TTCATATTCTAAACTTACTAAAAATTTGCCATCACATAATCCCCTAACATATTTTTTAAACTTCT
* *
7364188 CTAAAAGGGGAAAAGAGGTATCACGAAGTTTCTAGCAT
66 CTAAAAGAGAAAAAGAGGTATCACGAAGTTTCTAGCAT
*
7364226 TTCATATTCTAAACTTACTAAAAATTTGCCATCACATAATTCCCTAACATATTTTTTAAACTTCT
1 TTCATATTCTAAACTTACTAAAAATTTGCCATCACATAATCCCCTAACATATTTTTTAAACTTCT
* * * * *
7364291 TTTAAAGAGAAAAAGATGTATCACGATGTTTGTAGCAT
66 CTAAAAGAGAAAAAGAGGTATCACGAAGTTTCTAGCAT
7364329 TTCAT
1 TTCAT
7364334 TAAAAAAAAT
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
103 99 1.00
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (103 bp):
TTCATATTCTAAACTTACTAAAAATTTGCCATCACATAATCCCCTAACATATTTTTTAAACTTCT
CTAAAAGAGAAAAAGAGGTATCACGAAGTTTCTAGCAT
Found at i:7365702 original size:16 final size:16
Alignment explanation
Indices: 7365683--7365717 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
7365673 TAAATATATA
7365683 AAATTTAAAATTAAAT
1 AAATTTAAAATTAAAT
7365699 AAATTTAAAATTAAAT
1 AAATTTAAAATTAAAT
7365715 AAA
1 AAA
7365718 AAAAAACCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
AAATTTAAAATTAAAT
Found at i:7366090 original size:12 final size:12
Alignment explanation
Indices: 7366074--7366103 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7366064 TTTTTAAATG
7366074 ATTTAATAAAAA
1 ATTTAATAAAAA
*
7366086 TTTTAATAAAAA
1 ATTTAATAAAAA
7366098 ATTTAA
1 ATTTAA
7366104 ATTAATAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
ATTTAATAAAAA
Found at i:7366342 original size:13 final size:13
Alignment explanation
Indices: 7366324--7366366 Score: 61
Period size: 13 Copynumber: 3.2 Consensus size: 13
7366314 TTAATTTATC
7366324 AATTTTTATTTTT
1 AATTTTTATTTTT
7366337 AATTTTTATTTTT
1 AATTTTTATTTTT
7366350 -ATTTGTTCATTTTT
1 AATTT-TT-ATTTTT
7366364 AAT
1 AAT
7366367 CAAAAACTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 4 0.15
13 15 0.56
14 6 0.22
15 2 0.07
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.72
Consensus pattern (13 bp):
AATTTTTATTTTT
Found at i:7366348 original size:5 final size:6
Alignment explanation
Indices: 7366325--7366364 Score: 53
Period size: 6 Copynumber: 6.2 Consensus size: 6
7366315 TAATTTATCA
7366325 ATTTTT ATTTTT AATTTTT ATTTTT ATTTGTT CATTTTT A
1 ATTTTT ATTTTT -ATTTTT ATTTTT ATTT-TT -ATTTTT A
7366365 ATCAAAAACT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
6 17 0.55
7 10 0.32
8 4 0.13
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.75
Consensus pattern (6 bp):
ATTTTT
Found at i:7366349 original size:19 final size:20
Alignment explanation
Indices: 7366325--7366364 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
7366315 TAATTTATCA
7366325 ATTTTTATTT-TTAATTTTT
1 ATTTTTATTTGTTAATTTTT
*
7366344 ATTTTTATTTGTTCATTTTT
1 ATTTTTATTTGTTAATTTTT
7366364 A
1 A
7366365 ATCAAAAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.75
Consensus pattern (20 bp):
ATTTTTATTTGTTAATTTTT
Found at i:7371043 original size:24 final size:21
Alignment explanation
Indices: 7371000--7371064 Score: 60
Period size: 24 Copynumber: 2.9 Consensus size: 21
7370990 GATTCGTTTG
*
7371000 GATAAGATTAAAAATAATAATGGT
1 GATAAGATTAATAAT-ATAAT--T
7371024 GATAAGATTAATTAATATAATT
1 GATAAGATTAA-TAATATAATT
*
7371046 -ATAAGATTAAATATTATAA
1 GATAAGATT-AATAATATAA
7371065 CGATAGAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
21 15 0.41
22 3 0.08
24 16 0.43
25 3 0.08
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.35
Consensus pattern (21 bp):
GATAAGATTAATAATATAATT
Found at i:7371051 original size:21 final size:21
Alignment explanation
Indices: 7371001--7371064 Score: 67
Period size: 21 Copynumber: 2.9 Consensus size: 21
7370991 ATTCGTTTGG
7371001 ATAAGATTAAA-AATAATAATGGT
1 ATAAGATTAAATAAT-ATAAT--T
*
7371024 GATAAGATTAATTAATATAATT
1 -ATAAGATTAAATAATATAATT
*
7371046 ATAAGATTAAATATTATAA
1 ATAAGATTAAATAATATAA
7371065 CGATAGAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
21 17 0.47
22 1 0.03
24 15 0.42
25 3 0.08
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (21 bp):
ATAAGATTAAATAATATAATT
Done.