Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25818110
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 67000 characters in sequence are not A, C, G, or T
File 36 of 127
Found at i:7371223 original size:26 final size:29
Alignment explanation
Indices: 7371170--7371242 Score: 71
Period size: 26 Copynumber: 2.6 Consensus size: 29
7371160 GTATATAATA
* *
7371170 AAATTTATAATATATATTTAATATTTATG
1 AAATTTATAATATATATTTAAAAATTATG
*
7371199 AAATTTATAA-ATA-A-TTAAAAATTATT
1 AAATTTATAATATATATTTAAAAATTATG
* *
7371225 AAAATTATTGATATATAT
1 AAATTTA-TAATATATAT
7371243 ATATCAAATA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
26 15 0.43
27 3 0.09
28 6 0.17
29 11 0.31
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.47
Consensus pattern (29 bp):
AAATTTATAATATATATTTAAAAATTATG
Found at i:7382310 original size:34 final size:34
Alignment explanation
Indices: 7382272--7382338 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
7382262 GAACCTTGTG
* *
7382272 AAAGCTTTCAAATTTGTA-TTTCTAGAAGCTTTCA
1 AAAGCTTTCAAATTAGCATTTTC-AGAAGCTTTCA
*
7382306 AAAGCTTTCAGATTAGCATTTTCAGAAGCTTTC
1 AAAGCTTTCAAATTAGCATTTTCAGAAGCTTTC
7382339 GAATTTGAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 25 0.86
35 4 0.14
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.39
Consensus pattern (34 bp):
AAAGCTTTCAAATTAGCATTTTCAGAAGCTTTCA
Found at i:7384964 original size:21 final size:21
Alignment explanation
Indices: 7384933--7384995 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
7384923 ACAAAATTGA
7384933 TTAG-GTTTAGGTTTTGGGGT
1 TTAGAGTTTAGGTTTTGGGGT
** *
7384953 TTAGGAG-TTAGGGATTAGGGT
1 TTA-GAGTTTAGGTTTTGGGGT
*
7384974 TTAGAGTTTTGGATTTTGGGGT
1 TTAGAGTTTAGG-TTTTGGGGT
7384996 ATAAACTTTA
Statistics
Matches: 32, Mismatches: 7, Indels: 6
0.71 0.16 0.13
Matches are distributed among these distances:
20 6 0.19
21 19 0.59
22 7 0.22
ACGTcount: A:0.16, C:0.00, G:0.40, T:0.44
Consensus pattern (21 bp):
TTAGAGTTTAGGTTTTGGGGT
Found at i:7389748 original size:18 final size:18
Alignment explanation
Indices: 7389725--7389795 Score: 58
Period size: 18 Copynumber: 4.0 Consensus size: 18
7389715 TGATAACTCA
7389725 GCTTTTTTCTATTTTTTT
1 GCTTTTTTCTATTTTTTT
* *
7389743 GCTTTTCATCT-TCTTTTT
1 GCTTTT-TTCTATTTTTTT
* * *
7389761 CCTTTTTTAGTATTTTCTT
1 GCTTTTTT-CTATTTTTTT
7389780 -CTTTTTT-TATTTTTTT
1 GCTTTTTTCTATTTTTTT
7389796 TTAAAATTTA
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
16 8 0.19
17 1 0.02
18 25 0.60
19 8 0.19
ACGTcount: A:0.07, C:0.14, G:0.04, T:0.75
Consensus pattern (18 bp):
GCTTTTTTCTATTTTTTT
Found at i:7391115 original size:76 final size:77
Alignment explanation
Indices: 7390994--7391146 Score: 245
Period size: 76 Copynumber: 2.0 Consensus size: 77
7390984 ATTTTATAAA
*
7390994 AAAATGACGAATTAAAATGATAAAACAAAAAAATTTAACTTGCAGCAACAC-ATGTATTTTTCTA
1 AAAATGACGAATTAAAATGATAAAACAAAAAAATTTAACTCGCAGCAACACAATGTATTTTTCTA
7391058 ATACTTTATTAC
66 ATACTTTATTAC
* * * *
7391070 AAAATGATGAATTGAAATGGTAAAACAAAAAAATTTATCTCGCAGCAACACATATGTATTTTTCT
1 AAAATGACGAATTAAAATGATAAAACAAAAAAATTTAACTCGCAGCAACACA-ATGTATTTTTCT
7391135 AATACTTTATTA
65 AATACTTTATTA
7391147 TTGTTGAATT
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
76 46 0.66
78 24 0.34
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (77 bp):
AAAATGACGAATTAAAATGATAAAACAAAAAAATTTAACTCGCAGCAACACAATGTATTTTTCTA
ATACTTTATTAC
Found at i:7391614 original size:17 final size:16
Alignment explanation
Indices: 7391594--7391639 Score: 56
Period size: 17 Copynumber: 2.8 Consensus size: 16
7391584 TTAAGATACA
*
7391594 AAAAAAAAAATTTATAT
1 AAAAAAATAATTTAT-T
*
7391611 AAAAAAATTATTTATT
1 AAAAAAATAATTTATT
*
7391627 AATAAAATAATTT
1 AAAAAAATAATTT
7391640 CAACTTAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
16 12 0.48
17 13 0.52
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
AAAAAAATAATTTATT
Found at i:7394901 original size:29 final size:27
Alignment explanation
Indices: 7394871--7394923 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
7394861 ATTCTTAGTT
* *
7394871 TTTTATATTATATTCATCCTGTACCTC
1 TTTTATATAATACTCATCCTGTACCTC
*
7394898 TTTTATATAATACTCATCTTGTACCT
1 TTTTATATAATACTCATCCTGTACCT
7394924 ATACTCAATG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.04, T:0.51
Consensus pattern (27 bp):
TTTTATATAATACTCATCCTGTACCTC
Found at i:7395073 original size:15 final size:15
Alignment explanation
Indices: 7395051--7395088 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
7395041 TTATGGCACA
*
7395051 TTTAAATAT-TTTTT
1 TTTAAATATGTATTT
7395065 TTATAAATATGTATTT
1 TT-TAAATATGTATTT
7395081 TTTAAATA
1 TTTAAATA
7395089 CAAATATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 2 0.10
15 13 0.62
16 6 0.29
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (15 bp):
TTTAAATATGTATTT
Found at i:7399908 original size:2 final size:2
Alignment explanation
Indices: 7399901--7399937 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
7399891 AATTACTCGC
7399901 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7399938 CGCGTGTGTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7401384 original size:19 final size:20
Alignment explanation
Indices: 7401356--7401397 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
7401346 TTGCACATAA
7401356 TATATATAATAAT-AAATTT
1 TATATATAATAATAAAATTT
*
7401375 TATATGTAATAATAAAATTT
1 TATATATAATAATAAAATTT
7401395 TAT
1 TAT
7401398 TTTAATATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (20 bp):
TATATATAATAATAAAATTT
Found at i:7403362 original size:18 final size:17
Alignment explanation
Indices: 7403341--7403379 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
7403331 AGACTTCCCT
*
7403341 AAAAGAACTTGTAAACCC
1 AAAA-AACTTGAAAACCC
*
7403359 AAAACACTTGAAAACCC
1 AAAAAACTTGAAAACCC
7403376 AAAA
1 AAAA
7403380 CCAAAAGAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.56, C:0.23, G:0.08, T:0.13
Consensus pattern (17 bp):
AAAAAACTTGAAAACCC
Found at i:7403373 original size:17 final size:17
Alignment explanation
Indices: 7403347--7403380 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7403337 CCCTAAAAGA
*
7403347 ACTTGTAAACCCAAAAC
1 ACTTGAAAACCCAAAAC
7403364 ACTTGAAAACCCAAAAC
1 ACTTGAAAACCCAAAAC
7403381 CAAAAGAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.29, G:0.06, T:0.15
Consensus pattern (17 bp):
ACTTGAAAACCCAAAAC
Found at i:7412061 original size:50 final size:50
Alignment explanation
Indices: 7411954--7412122 Score: 168
Period size: 50 Copynumber: 3.4 Consensus size: 50
7411944 TTTAGAATCC
* * * *
7411954 TAACGTCTGGTGTGATTCT-AT-GATCTGTGTGTACTTTGTATTAGGCTTGCC
1 TAACGTTTGGTGTAATT-TGATAGATCTGTGTGTA--TTGTATTGGGCTTGCA
*
7412005 TAACGTTTGGTGTAATTTGATAGATCTGTGTGTATTGTGTTGGGCTTG-A
1 TAACGTTTGGTGTAATTTGATAGATCTGTGTGTATTGTATTGGGCTTGCA
* * * *
7412054 TAGACGTTTGGTGTGATTTGATAAATCTGTGTGCAGTGTATTGGGCTTGC-
1 TA-ACGTTTGGTGTAATTTGATAGATCTGTGTGTATTGTATTGGGCTTGCA
*
7412104 TCAACG-TTGGTGTGATTTG
1 T-AACGTTTGGTGTAATTTG
7412123 GTGGATCTAT
Statistics
Matches: 103, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
49 15 0.15
50 58 0.56
51 18 0.17
52 12 0.12
ACGTcount: A:0.17, C:0.11, G:0.30, T:0.43
Consensus pattern (50 bp):
TAACGTTTGGTGTAATTTGATAGATCTGTGTGTATTGTATTGGGCTTGCA
Found at i:7415466 original size:32 final size:35
Alignment explanation
Indices: 7415424--7415490 Score: 88
Period size: 32 Copynumber: 2.0 Consensus size: 35
7415414 TATTACTATT
*
7415424 AGATGCTTTTC-ATTTTT-T-TT-TTTTATATATAA
1 AGATGATTTTCAATTTTTATATTATTTT-TATATAA
7415456 AGATGATTTTCAATTTTTATATTATTTTTATATAA
1 AGATGATTTTCAATTTTTATATTATTTTTATATAA
7415491 GATTTTTATA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
32 10 0.33
33 6 0.20
34 1 0.03
35 9 0.30
36 4 0.13
ACGTcount: A:0.30, C:0.04, G:0.06, T:0.60
Consensus pattern (35 bp):
AGATGATTTTCAATTTTTATATTATTTTTATATAA
Found at i:7415495 original size:13 final size:13
Alignment explanation
Indices: 7415479--7415503 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7415469 TTTTTATATT
7415479 ATTTTTATATAAG
1 ATTTTTATATAAG
7415492 ATTTTTATATAA
1 ATTTTTATATAA
7415504 ACGTATGCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (13 bp):
ATTTTTATATAAG
Found at i:7415857 original size:16 final size:15
Alignment explanation
Indices: 7415832--7415861 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
7415822 TATAAAATAT
7415832 ATAAATAATTTAAAA
1 ATAAATAATTTAAAA
7415847 ATAACATAATTTAAA
1 ATAA-ATAATTTAAA
7415862 TTTAATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (15 bp):
ATAAATAATTTAAAA
Found at i:7424336 original size:14 final size:16
Alignment explanation
Indices: 7424317--7424358 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
7424307 ATATTATTTT
7424317 TTTAAATATA-AA-TA
1 TTTAAATATATAATTA
7424331 TTTAAATATATAATTA
1 TTTAAATATATAATTA
*
7424347 TATAAATATATA
1 TTTAAATATATA
7424359 TACATAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 10 0.40
15 2 0.08
16 13 0.52
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
TTTAAATATATAATTA
Found at i:7424338 original size:8 final size:8
Alignment explanation
Indices: 7424322--7424358 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
7424312 ATTTTTTTAA
7424322 ATATAAAT
1 ATATAAAT
*
7424330 ATTTAAAT
1 ATATAAAT
*
7424338 ATATAATT
1 ATATAAAT
7424346 ATATAAAT
1 ATATAAAT
7424354 ATATA
1 ATATA
7424359 TACATAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (8 bp):
ATATAAAT
Found at i:7424365 original size:14 final size:14
Alignment explanation
Indices: 7424319--7424368 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
7424309 ATTATTTTTT
* *
7424319 TAAATATAAATATT
1 TAAATATATATATA
7424333 TAAATATATAATTATA
1 TAAATATAT-A-TATA
*
7424349 TAAATATATATACA
1 TAAATATATATATA
7424363 TAAATA
1 TAAATA
7424369 ATTAAAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
14 17 0.55
15 2 0.06
16 12 0.39
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (14 bp):
TAAATATATATATA
Found at i:7425009 original size:27 final size:27
Alignment explanation
Indices: 7424957--7425019 Score: 69
Period size: 27 Copynumber: 2.3 Consensus size: 27
7424947 TCAAAAATTT
*
7424957 TTAATTAATAAATAAAGTTTATTATAA
1 TTAAATAATAAATAAAGTTTATTATAA
7424984 -TAAACTAATAAATAAA-TATCTA-TATAA
1 TTAAA-TAATAAATAAAGT-T-TATTATAA
7425011 TTAAATAAT
1 TTAAATAAT
7425020 TAATTAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
26 4 0.13
27 21 0.68
28 6 0.19
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.40
Consensus pattern (27 bp):
TTAAATAATAAATAAAGTTTATTATAA
Found at i:7425586 original size:23 final size:22
Alignment explanation
Indices: 7425534--7425588 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 22
7425524 AAATTTTTTA
* *
7425534 TTTTAATATTAAATTTTAATTT
1 TTTTAAAATTAAATTTTAATAT
*
7425556 TTTATAAAATTAAATTTTCATAAT
1 TTT-TAAAATTAAATTTTAAT-AT
7425580 TTTTAAAAT
1 TTTTAAAAT
7425589 CAAAATGTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 3 0.11
23 21 0.75
24 4 0.14
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (22 bp):
TTTTAAAATTAAATTTTAATAT
Found at i:7426649 original size:2 final size:2
Alignment explanation
Indices: 7426602--7426630 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
7426592 TTTAAATTTA
7426602 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7426631 CAGATGGCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:7426970 original size:18 final size:19
Alignment explanation
Indices: 7426929--7426971 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
7426919 AGAATAAAAG
*
7426929 TAAAATAATACATGAAATT
1 TAAAATAATACATAAAATT
* *
7426948 GAAAATCATACA-AAAATT
1 TAAAATAATACATAAAATT
7426966 TAAAAT
1 TAAAAT
7426972 TATTTTTAGA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.60, C:0.07, G:0.05, T:0.28
Consensus pattern (19 bp):
TAAAATAATACATAAAATT
Found at i:7429353 original size:22 final size:22
Alignment explanation
Indices: 7429324--7429367 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7429314 TTAAAATTAA
* *
7429324 ATTTTTTATATTATTTTAATAGC
1 ATTTTTAATA-TATTTAAATAGC
7429347 ATTTTTAATATATTTAAATAG
1 ATTTTTAATATATTTAAATAG
7429368 ATTCATATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (22 bp):
ATTTTTAATATATTTAAATAGC
Found at i:7429896 original size:20 final size:20
Alignment explanation
Indices: 7429859--7429897 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7429849 TCACGTAATC
*
7429859 CACATAAATTATTCAAATTT
1 CACATAAATTATTAAAATTT
7429879 CACAT-AATTATCTAAAATT
1 CACATAAATTAT-TAAAATT
7429898 CTTTATAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (20 bp):
CACATAAATTATTAAAATTT
Found at i:7435952 original size:30 final size:30
Alignment explanation
Indices: 7435911--7435992 Score: 121
Period size: 30 Copynumber: 2.7 Consensus size: 30
7435901 CATCTAATGG
7435911 AGGGCTCAATTGGGTGAAAATAGATGCTTA
1 AGGGCTCAATTGGGTGAAAATAGATGCTTA
* * *
7435941 AGGGTTCAATTGGATGAAAATAGATGTTTA
1 AGGGCTCAATTGGGTGAAAATAGATGCTTA
7435971 AGGGCTCAATTGGAG-GAAAATA
1 AGGGCTCAATTGG-GTGAAAATA
7435993 AAATTTTGAG
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 46 1.00
ACGTcount: A:0.37, C:0.07, G:0.29, T:0.27
Consensus pattern (30 bp):
AGGGCTCAATTGGGTGAAAATAGATGCTTA
Found at i:7437508 original size:2 final size:2
Alignment explanation
Indices: 7437501--7437525 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7437491 TTTACAAAGA
7437501 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7437526 GTTTCTGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7443124 original size:16 final size:16
Alignment explanation
Indices: 7443074--7443113 Score: 71
Period size: 16 Copynumber: 2.4 Consensus size: 16
7443064 GGCCATTTTA
7443074 TTATTATTGTTTTAATT
1 TTATT-TTGTTTTAATT
7443091 TTATTTTGTTTTAATT
1 TTATTTTGTTTTAATT
7443107 TTATTTT
1 TTATTTT
7443114 TTATTATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 18 0.78
17 5 0.22
ACGTcount: A:0.20, C:0.00, G:0.05, T:0.75
Consensus pattern (16 bp):
TTATTTTGTTTTAATT
Found at i:7443158 original size:18 final size:17
Alignment explanation
Indices: 7443133--7443185 Score: 63
Period size: 18 Copynumber: 3.1 Consensus size: 17
7443123 TTTCCATTTA
* *
7443133 TTAT-TTATTTTATTGT
1 TTATATTATATTATTAT
7443149 TTACTATTATATTATTAT
1 TTA-TATTATATTATTAT
7443167 TTATATTATCATTATTAT
1 TTATATTAT-ATTATTAT
7443185 T
1 T
7443186 ATTTTGATTG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
16 3 0.09
17 7 0.22
18 22 0.69
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (17 bp):
TTATATTATATTATTAT
Found at i:7445867 original size:63 final size:62
Alignment explanation
Indices: 7445675--7445870 Score: 227
Period size: 63 Copynumber: 3.1 Consensus size: 62
7445665 CTTAAACCCT
* * * *
7445675 AAAATAGAAAAGAATTATTTAAGGCATTTTTTATTCAAAAATACCTTAAATAATCCA-TTTATA
1 AAAATATAAAAGAATTATTTAA-ACATTTTCTATACAAAAATACCTTAAATAAT-CATTTTATA
* * *
7445738 AAATTATAAAAGAATTATTT-AAGATGTTTCTATATAGAAAATACCTTAAATAAT-ACTTTTATA
1 AAAATATAAAAGAATTATTTAAACAT-TTTCTATACA-AAAATACCTTAAATAATCA-TTTTATA
* * *
7445801 AAAATATAAAATAATTATTTAATACATTTTCTATGCAAAAATGCCTTAAATAATCATTTTATA
1 AAAATATAAAAGAATTATTTAA-ACATTTTCTATACAAAAATACCTTAAATAATCATTTTATA
7445864 AAAATAT
1 AAAATAT
7445871 TAACCCTAAA
Statistics
Matches: 113, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
61 3 0.03
62 8 0.07
63 89 0.79
64 10 0.09
65 3 0.03
ACGTcount: A:0.48, C:0.08, G:0.05, T:0.38
Consensus pattern (62 bp):
AAAATATAAAAGAATTATTTAAACATTTTCTATACAAAAATACCTTAAATAATCATTTTATA
Found at i:7447149 original size:23 final size:24
Alignment explanation
Indices: 7447113--7447158 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
7447103 AGATATTATA
*
7447113 AATATTAAACAAAT-TCAGATATG
1 AATATTAAACAAATAACAGATATG
7447136 AATATCTAAA-AAATAACAGATAT
1 AATAT-TAAACAAATAACAGATAT
7447159 CCGCTTTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.57, C:0.09, G:0.07, T:0.28
Consensus pattern (24 bp):
AATATTAAACAAATAACAGATATG
Found at i:7450679 original size:63 final size:62
Alignment explanation
Indices: 7450487--7450682 Score: 227
Period size: 63 Copynumber: 3.1 Consensus size: 62
7450477 CTTAAACCCT
* *
7450487 AAAATATAAAAGAATTATTTAAGGCATTTTTTATTCAAAAATACCTTAAATAATCCA-TTTATA
1 AAAATATAAAAGAATTATTTAA-GCATTTTCTATACAAAAATACCTTAAATAAT-CATTTTATA
* * *
7450550 AAATTATAAAAGAATTATTTAAG-ATGTTTCTATATAGAAAATACCTTAAATGAT-ACTTTTATA
1 AAAATATAAAAGAATTATTTAAGCAT-TTTCTATACA-AAAATACCTTAAATAATCA-TTTTATA
* * * * *
7450613 AAAATATAAAATATTTATTTAATGCGTTTTCTATACAAAAATGCCTTAAAAAATCATTTTATA
1 AAAATATAAAAGAATTATTTAA-GCATTTTCTATACAAAAATACCTTAAATAATCATTTTATA
7450676 AAAATAT
1 AAAATAT
7450683 TAACCCTAAA
Statistics
Matches: 113, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
61 3 0.03
62 8 0.07
63 90 0.80
64 11 0.10
65 1 0.01
ACGTcount: A:0.47, C:0.08, G:0.06, T:0.39
Consensus pattern (62 bp):
AAAATATAAAAGAATTATTTAAGCATTTTCTATACAAAAATACCTTAAATAATCATTTTATA
Found at i:7450878 original size:217 final size:217
Alignment explanation
Indices: 7450439--7450858 Score: 504
Period size: 217 Copynumber: 2.0 Consensus size: 217
7450429 TTTATGTGCA
* * * * *
7450439 AAAAACACCTTAAATAATCCTTTTATAAAAATAATAACCTTAAAC-C-----C-TAAAATATAAA
1 AAAAACGCCTTAAAAAATCATTTTATAAAAATATTAACCCTAAACTCTAAATCATAAAATATAAA
* *
7450497 AGAATTATTTAAGGCATTTTTTATTCAAAAATACCTTAAATAATCCATTTATAAAATTATAAAAG
66 AGAATTATTTAAGGCATTTTTTATTCAAAAACACCTTAAATAATCCATTTATAAAATTAGAAAAG
* * * * * *
7450562 AATTATTTAAGATGTTTCTATATAGAAAATACCTTAAATGATACTTTTATAAAAATATAAAATAT
131 AATTATTTAAAATGTTTCTATATAGAAAATACATTAAATAATACATGTATAAAAATATAAAAAAT
* *
7450627 TTATTTAATGCGTTTTCTATAC
196 TTATTCAAGGCGTTTTCTATAC
*
7450649 AAAAATGCCTTAAAAAATCATTTTATAAAAATATTAACCCTAAACTCTAAATCATAAAATATAAA
1 AAAAACGCCTTAAAAAATCATTTTATAAAAATATTAACCCTAAACTCTAAATCATAAAATATAAA
* **
7450714 A-AGATTATTTAAGGTATTTTTT-TGTACAAAAACACCTTAAATAATCTTTTTATACAAA-TAGA
66 AGA-ATTATTTAAGGCATTTTTTAT-T-CAAAAACACCTTAAATAATCCATTTATA-AAATTAGA
* * * *
7450776 TATGAATTATTTAAAACT-TTTTTATATA-AAAATACATTAAATAATCCATGTATAAAAATATAA
127 AAAGAATTATTTAAAA-TGTTTCTATATAGAAAATACATTAAATAATACATGTATAAAAATATAA
7450839 AAAATTTATTCAAGGCGTTT
191 AAAATTTATTCAAGGCGTTT
7450859 CTTCATGCCA
Statistics
Matches: 175, Mismatches: 23, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
210 39 0.22
211 1 0.01
216 3 0.02
217 78 0.45
218 50 0.29
219 4 0.02
ACGTcount: A:0.47, C:0.10, G:0.05, T:0.37
Consensus pattern (217 bp):
AAAAACGCCTTAAAAAATCATTTTATAAAAATATTAACCCTAAACTCTAAATCATAAAATATAAA
AGAATTATTTAAGGCATTTTTTATTCAAAAACACCTTAAATAATCCATTTATAAAATTAGAAAAG
AATTATTTAAAATGTTTCTATATAGAAAATACATTAAATAATACATGTATAAAAATATAAAAAAT
TTATTCAAGGCGTTTTCTATAC
Found at i:7461449 original size:15 final size:15
Alignment explanation
Indices: 7461410--7461453 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
7461400 TTATAATGGA
*
7461410 TTATTAATATAATTTT
1 TTATTTATA-AATTTT
*
7461426 TAATGTTATAAATTTT
1 TTAT-TTATAAATTTT
7461442 TTATTTATAAAT
1 TTATTTATAAAT
7461454 GATTTATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
15 8 0.33
16 12 0.50
17 4 0.17
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (15 bp):
TTATTTATAAATTTT
Found at i:7461670 original size:45 final size:45
Alignment explanation
Indices: 7461619--7461715 Score: 104
Period size: 45 Copynumber: 2.2 Consensus size: 45
7461609 TTAAATTTTG
* ** * * *
7461619 ACTTAATAAATAGATATTTAATGAGTTCGGTAATATATATTTCAA
1 ACTTAATAAATAAATAGATAATAAGTTCGATAATAAATATTTCAA
* * *
7461664 ACTTAATGAGTAAATAGATAATAAGTTTGATAATAAATATTTCAA
1 ACTTAATAAATAAATAGATAATAAGTTCGATAATAAATATTTCAA
*
7461709 AATTAAT
1 ACTTAAT
7461716 GAGTATGTTA
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.46, C:0.05, G:0.10, T:0.38
Consensus pattern (45 bp):
ACTTAATAAATAAATAGATAATAAGTTCGATAATAAATATTTCAA
Found at i:7461858 original size:14 final size:15
Alignment explanation
Indices: 7461841--7461870 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
7461831 ATTAAAATTG
7461841 ATTTAATT-TGATAA
1 ATTTAATTGTGATAA
7461855 ATTTAATTGTGATAA
1 ATTTAATTGTGATAA
7461870 A
1 A
7461871 AATTTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47
Consensus pattern (15 bp):
ATTTAATTGTGATAA
Found at i:7461967 original size:18 final size:18
Alignment explanation
Indices: 7461946--7462000 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 18
7461936 TCAATATTAT
7461946 AAATATAATTAATTTTTG
1 AAATATAATTAATTTTTG
* *
7461964 AAATAT-ATT-ATATATG
1 AAATATAATTAATTTTTG
* *
7461980 AAATATAAATAATTTTAG
1 AAATATAATTAATTTTTG
7461998 AAA
1 AAA
7462001 AACCCTAAGA
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
16 11 0.38
17 5 0.17
18 13 0.45
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (18 bp):
AAATATAATTAATTTTTG
Found at i:7466606 original size:42 final size:43
Alignment explanation
Indices: 7466545--7466633 Score: 144
Period size: 42 Copynumber: 2.1 Consensus size: 43
7466535 TGAAGAATAT
*
7466545 TTTTTTGTAATGACATTAACATGGTATA-TTTTGGTATTTGAC
1 TTTTGTGTAATGACATTAACATGGTATATTTTTGGTATTTGAC
* *
7466587 TTTTGTGTGATGATATTAACATGGTATATTTTTGGTATTTGAC
1 TTTTGTGTAATGACATTAACATGGTATATTTTTGGTATTTGAC
7466630 TTTT
1 TTTT
7466634 TACTATGATT
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
42 25 0.58
43 18 0.42
ACGTcount: A:0.24, C:0.06, G:0.18, T:0.53
Consensus pattern (43 bp):
TTTTGTGTAATGACATTAACATGGTATATTTTTGGTATTTGAC
Found at i:7468121 original size:3 final size:3
Alignment explanation
Indices: 7468113--7468160 Score: 71
Period size: 3 Copynumber: 16.3 Consensus size: 3
7468103 AAACAAGTTA
* *
7468113 AAG AAG AAG AAG AAG AAG AA- AAC AAG TAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
7468160 A
1 A
7468161 CAGTAGTAGG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.67, C:0.02, G:0.29, T:0.02
Consensus pattern (3 bp):
AAG
Found at i:7468145 original size:29 final size:29
Alignment explanation
Indices: 7468102--7468160 Score: 102
Period size: 29 Copynumber: 2.0 Consensus size: 29
7468092 TGGGCTAGAC
7468102 AAAACAAGTTAAAGAAGAAGAAGAAGAAG
1 AAAACAAGTTAAAGAAGAAGAAGAAGAAG
7468131 AAAACAAG-TAGAAGAAGAAGAAGAAGAAG
1 AAAACAAGTTA-AAGAAGAAGAAGAAGAAG
7468160 A
1 A
7468161 CAGTAGTAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 2 0.07
29 27 0.93
ACGTcount: A:0.66, C:0.03, G:0.25, T:0.05
Consensus pattern (29 bp):
AAAACAAGTTAAAGAAGAAGAAGAAGAAG
Found at i:7468150 original size:26 final size:25
Alignment explanation
Indices: 7468114--7468166 Score: 88
Period size: 26 Copynumber: 2.1 Consensus size: 25
7468104 AACAAGTTAA
7468114 AGAAGAAGAAGAAGAAGAAAACAAGT
1 AGAAGAAGAAGAAGAAGAAAAC-AGT
*
7468140 AGAAGAAGAAGAAGAAGAAGACAGT
1 AGAAGAAGAAGAAGAAGAAAACAGT
7468165 AG
1 AG
7468167 TAGGGCAAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 5 0.19
26 21 0.81
ACGTcount: A:0.62, C:0.04, G:0.30, T:0.04
Consensus pattern (25 bp):
AGAAGAAGAAGAAGAAGAAAACAGT
Found at i:7474472 original size:2 final size:2
Alignment explanation
Indices: 7474465--7474494 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
7474455 TGATGTAAGC
*
7474465 AT AT AT AT AT AT AT AT AT GT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7474495 TTACCACACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7475623 original size:98 final size:99
Alignment explanation
Indices: 7475453--7475651 Score: 382
Period size: 98 Copynumber: 2.0 Consensus size: 99
7475443 GTATTTTTAG
*
7475453 AATCATTAACACTTCTAATTCCAATCTATATCAAGATTCATGTTTCGAAAACTTTAAGCTAAGAT
1 AATCATCAACACTTCTAATTCCAATCTATATCAAGATTCATGTTTCGAAAACTTTAAGCTAAGAT
7475518 TAAGTGAACCTGATCATTTAATTTGTATCAAAAT
66 TAAGTGAACCTGATCATTTAATTTGTATCAAAAT
7475552 AATCATCAACACTTCTAA-TCCAATCTATATCAAGATTCATGTTTCGAAAACTTTAAGCTAAGAT
1 AATCATCAACACTTCTAATTCCAATCTATATCAAGATTCATGTTTCGAAAACTTTAAGCTAAGAT
7475616 TAAGTGAACCTGATCATTTAATTTGTATCAAAAT
66 TAAGTGAACCTGATCATTTAATTTGTATCAAAAT
7475650 AA
1 AA
7475652 AAGTGATAAG
Statistics
Matches: 99, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
98 82 0.83
99 17 0.17
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.35
Consensus pattern (99 bp):
AATCATCAACACTTCTAATTCCAATCTATATCAAGATTCATGTTTCGAAAACTTTAAGCTAAGAT
TAAGTGAACCTGATCATTTAATTTGTATCAAAAT
Found at i:7475954 original size:10 final size:10
Alignment explanation
Indices: 7475927--7475970 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
7475917 TAAATAGATT
7475927 TATA-AAAAA
1 TATATAAAAA
7475936 T-TA-AAAAA
1 TATATAAAAA
7475944 TATATAAAAA
1 TATATAAAAA
7475954 T-TAATAAAAA
1 TAT-ATAAAAA
7475964 TATATAA
1 TATATAA
7475971 TGCAATTCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
8 8 0.26
9 4 0.13
10 18 0.58
11 1 0.03
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (10 bp):
TATATAAAAA
Found at i:7475954 original size:18 final size:20
Alignment explanation
Indices: 7475927--7475970 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
7475917 TAAATAGATT
7475927 TATA-AAAAATT-A-AAAAA
1 TATATAAAAATTAATAAAAA
7475944 TATATAAAAATTAATAAAAA
1 TATATAAAAATTAATAAAAA
7475964 TATATAA
1 TATATAA
7475971 TGCAATTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.17
18 7 0.29
19 1 0.04
20 12 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (20 bp):
TATATAAAAATTAATAAAAA
Found at i:7476016 original size:11 final size:11
Alignment explanation
Indices: 7476000--7476051 Score: 52
Period size: 11 Copynumber: 4.4 Consensus size: 11
7475990 TCTTAATTTA
7476000 AAATTTAATTC
1 AAATTTAATTC
7476011 AAATTTAATAT-
1 AAATTTAAT-TC
7476022 ATACATTTAATATTC
1 A-A-ATTT-A-ATTC
7476037 AAATTTAATTC
1 AAATTTAATTC
7476048 AAAT
1 AAAT
7476052 CAAATAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
11 18 0.51
12 3 0.09
13 8 0.23
14 3 0.09
15 3 0.09
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (11 bp):
AAATTTAATTC
Found at i:7476042 original size:13 final size:13
Alignment explanation
Indices: 7476007--7476045 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
7475997 TTAAAATTTA
7476007 ATTCAAATTTAAT
1 ATTCAAATTTAAT
*
7476020 ATAT-ACATTTAAT
1 AT-TCAAATTTAAT
7476033 ATTCAAATTTAAT
1 ATTCAAATTTAAT
7476046 TCAAATCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
12 1 0.05
13 20 0.91
14 1 0.05
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
ATTCAAATTTAAT
Found at i:7476068 original size:37 final size:36
Alignment explanation
Indices: 7475992--7476072 Score: 92
Period size: 37 Copynumber: 2.2 Consensus size: 36
7475982 TTTTTACATC
** * *
7475992 TTAATTTAAAATTTAATTCAAATTTAATATATACAT
1 TTAATTTAAAATTTAATTCAAATCAAATATAAAAAT
*
7476028 TTAATATTCAAATTTAATTCAAATCAAATA-AAAAATT
1 TTAAT-TTAAAATTTAATTCAAATCAAATATAAAAA-T
7476065 TTAATTTA
1 TTAATTTA
7476073 TATTAAACCA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
36 10 0.27
37 27 0.73
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.44
Consensus pattern (36 bp):
TTAATTTAAAATTTAATTCAAATCAAATATAAAAAT
Found at i:7481521 original size:15 final size:15
Alignment explanation
Indices: 7481501--7481534 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
7481491 TTTTGTTAGT
7481501 TTCTCTTTCAAT-TTC
1 TTCTCTTT-AATATTC
7481516 TTCTCTTTAATATTC
1 TTCTCTTTAATATTC
7481531 TTCT
1 TTCT
7481535 ATGAAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 3 0.17
15 15 0.83
ACGTcount: A:0.15, C:0.24, G:0.00, T:0.62
Consensus pattern (15 bp):
TTCTCTTTAATATTC
Found at i:7481639 original size:3 final size:3
Alignment explanation
Indices: 7481631--7481656 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7481621 GATGGTGCAA
7481631 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
7481657 AGGAAAAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7484150 original size:23 final size:22
Alignment explanation
Indices: 7484123--7484209 Score: 90
Period size: 23 Copynumber: 3.9 Consensus size: 22
7484113 TTTTTAGTCC
7484123 AATTTTATTTGTTTATATTTTAA
1 AATTTTATTT-TTTATATTTTAA
7484146 AATTTTAATTTTTTA-ATTCTTAA
1 AATTTT-ATTTTTTATATT-TTAA
*
7484169 ATGTTTTA-TTTTTATATTTT-A
1 A-ATTTTATTTTTTATATTTTAA
* *
7484190 AAGTTTATTTTTCATATTTT
1 AATTTTATTTTTTATATTTT
7484210 TAATTTTTTA
Statistics
Matches: 55, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
20 4 0.07
21 13 0.24
22 11 0.20
23 19 0.35
24 8 0.15
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (22 bp):
AATTTTATTTTTTATATTTTAA
Found at i:7484210 original size:22 final size:22
Alignment explanation
Indices: 7484126--7484212 Score: 81
Period size: 22 Copynumber: 3.9 Consensus size: 22
7484116 TTAGTCCAAT
* *
7484126 TTTATTTGTTTATATTTTAAAAT
1 TTTATTT-TTTATATTTTTAAAG
*
7484149 TTTAATTTTTTA-ATTCTTAAATG
1 TTT-ATTTTTTATATTTTTAAA-G
7484172 TTT-TATTTTTATA-TTTTAAAG
1 TTTAT-TTTTTATATTTTTAAAG
*
7484193 TTTATTTTTCATATTTTTAA
1 TTTATTTTTTATATTTTTAA
7484213 TTTTTTATTA
Statistics
Matches: 53, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
21 12 0.23
22 26 0.49
23 11 0.21
24 4 0.08
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (22 bp):
TTTATTTTTTATATTTTTAAAG
Found at i:7484395 original size:22 final size:23
Alignment explanation
Indices: 7484354--7484397 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
7484344 TTTTTTTATT
7484354 TAAAAAATATTGATAATTAAATGA
1 TAAAAAATATT-ATAATTAAATGA
*
7484378 TAAAAAATATT-TATTTAAAT
1 TAAAAAATATTATAATTAAAT
7484398 ATTAATGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 8 0.42
24 11 0.58
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.39
Consensus pattern (23 bp):
TAAAAAATATTATAATTAAATGA
Found at i:7485981 original size:29 final size:31
Alignment explanation
Indices: 7485923--7485991 Score: 88
Period size: 29 Copynumber: 2.3 Consensus size: 31
7485913 GTTACGAATT
7485923 ATTTTTAAATTATAATAAAACATATAATATA
1 ATTTTTAAATTATAATAAAACATATAATATA
* * *
7485954 ATTTTTAAATTTTAA-AAAA-TTTTAATATA
1 ATTTTTAAATTATAATAAAACATATAATATA
*
7485983 ATATTTAAA
1 ATTTTTAAA
7485992 AGATTATTTG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.47
30 4 0.12
31 14 0.41
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (31 bp):
ATTTTTAAATTATAATAAAACATATAATATA
Found at i:7486113 original size:29 final size:28
Alignment explanation
Indices: 7486070--7486124 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
7486060 ATAAATTTAT
*
7486070 AATTTAATATTATATTAAAGATTTTAAA
1 AATTTAATATCATATTAAAGATTTTAAA
*
7486098 AATTTAAATATCATATTAAATATTTTA
1 AATTT-AATATCATATTAAAGATTTTA
7486125 CTGTAATTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.21
29 19 0.79
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (28 bp):
AATTTAATATCATATTAAAGATTTTAAA
Found at i:7488179 original size:16 final size:16
Alignment explanation
Indices: 7488158--7488192 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7488148 GTCACATTCA
*
7488158 TATATTAATTTTATAT
1 TATATTAATATTATAT
*
7488174 TATATTTATATTATAT
1 TATATTAATATTATAT
7488190 TAT
1 TAT
7488193 CGTATCATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
TATATTAATATTATAT
Found at i:7489387 original size:20 final size:20
Alignment explanation
Indices: 7489364--7489404 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
7489354 ATATTTTTAA
7489364 ATTAA-AATTAAAATAAATAT
1 ATTAATAATTAAAAT-AATAT
*
7489384 ATTAATTATTAAAATAATAT
1 ATTAATAATTAAAATAATAT
7489404 A
1 A
7489405 ATCAAGTGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
ATTAATAATTAAAATAATAT
Found at i:7490435 original size:39 final size:39
Alignment explanation
Indices: 7490389--7490475 Score: 140
Period size: 39 Copynumber: 2.2 Consensus size: 39
7490379 TGTAAATAAT
7490389 ATCATGCAATAATATAATATAACATGCA-ATAATAATATA
1 ATCATGCAATAATATAATATAACATGCAGATAATAAT-TA
* *
7490428 ATCATGCAATAATATAATATATCATGCAGATATTAATTA
1 ATCATGCAATAATATAATATAACATGCAGATAATAATTA
7490467 ATCATGCAA
1 ATCATGCAA
7490476 ATATAACTCA
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
39 38 0.84
40 7 0.16
ACGTcount: A:0.49, C:0.11, G:0.07, T:0.32
Consensus pattern (39 bp):
ATCATGCAATAATATAATATAACATGCAGATAATAATTA
Found at i:7490479 original size:19 final size:20
Alignment explanation
Indices: 7490389--7490481 Score: 117
Period size: 19 Copynumber: 4.8 Consensus size: 20
7490379 TGTAAATAAT
7490389 ATCATGCAATAATATAATATA
1 ATCATGCAAT-ATATAATATA
7490410 A-CATGCAATA-ATAATATA
1 ATCATGCAATATATAATATA
7490428 ATCATGCAATAATATAATAT-
1 ATCATGCAAT-ATATAATATA
7490448 ATCATGCAGATAT-TAAT-TA
1 ATCATGCA-ATATATAATATA
7490467 ATCATGCAA-ATATAA
1 ATCATGCAATATATAA
7490482 CTCACATAGA
Statistics
Matches: 66, Mismatches: 0, Indels: 15
0.81 0.00 0.19
Matches are distributed among these distances:
17 2 0.03
18 14 0.21
19 21 0.32
20 19 0.29
21 10 0.15
ACGTcount: A:0.51, C:0.11, G:0.06, T:0.32
Consensus pattern (20 bp):
ATCATGCAATATATAATATA
Found at i:7490508 original size:39 final size:38
Alignment explanation
Indices: 7490457--7490551 Score: 117
Period size: 39 Copynumber: 2.5 Consensus size: 38
7490447 TATCATGCAG
7490457 ATATTAATTAATCATGCAAATATAA-CTCACATAGATAAA-
1 ATATTAA-TAATCATGCAAATATAATCTCACA-A-ATAAAT
7490496 ATGA-TATATAATCATGC-AATATAATCTCACAAATAAAT
1 AT-ATTA-ATAATCATGCAAATATAATCTCACAAATAAAT
7490534 ATATTAATAATCATGCAA
1 ATATTAATAATCATGCAA
7490552 TCAAATTAGA
Statistics
Matches: 50, Mismatches: 0, Indels: 13
0.79 0.00 0.21
Matches are distributed among these distances:
37 16 0.32
38 13 0.26
39 19 0.38
40 2 0.04
ACGTcount: A:0.51, C:0.13, G:0.05, T:0.32
Consensus pattern (38 bp):
ATATTAATAATCATGCAAATATAATCTCACAAATAAAT
Found at i:7490544 original size:37 final size:37
Alignment explanation
Indices: 7490457--7490552 Score: 117
Period size: 37 Copynumber: 2.5 Consensus size: 37
7490447 TATCATGCAG
7490457 ATATTAATTAATCATGCAAATATAACTCACATAGATAAA
1 ATATTAA-TAATCATGC-AATATAACTCACATAGATAAA
7490496 ATGA-TATATAATCATGCAATATAATCTCACA-A-ATAAA
1 AT-ATTA-ATAATCATGCAATATAA-CTCACATAGATAAA
7490533 TATATTAATAATCATGCAAT
1 -ATATTAATAATCATGCAAT
7490553 CAAATTAGAT
Statistics
Matches: 52, Mismatches: 0, Indels: 12
0.81 0.00 0.19
Matches are distributed among these distances:
37 19 0.37
38 12 0.23
39 19 0.37
40 2 0.04
ACGTcount: A:0.50, C:0.12, G:0.05, T:0.32
Consensus pattern (37 bp):
ATATTAATAATCATGCAATATAACTCACATAGATAAA
Found at i:7490580 original size:23 final size:22
Alignment explanation
Indices: 7490513--7490591 Score: 67
Period size: 23 Copynumber: 3.5 Consensus size: 22
7490503 ATAATCATGC
7490513 AATATAATC-TCACAAATAAATAT
1 AATATAATCAT-ACAAATAAAT-T
* *
7490536 ATTAATAATCATGC-AATCAAATT
1 AAT-ATAATCATACAAAT-AAATT
7490559 AGATATAATCATACAAATAAA-T
1 A-ATATAATCATACAAATAAATT
7490581 -ATATAATCATA
1 AATATAATCATA
7490592 TCATGCAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 13
0.73 0.06 0.20
Matches are distributed among these distances:
20 11 0.23
22 1 0.02
23 19 0.40
24 15 0.32
25 1 0.02
ACGTcount: A:0.54, C:0.11, G:0.03, T:0.32
Consensus pattern (22 bp):
AATATAATCATACAAATAAATT
Found at i:7490617 original size:23 final size:24
Alignment explanation
Indices: 7490565--7490633 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 24
7490555 AATTAGATAT
* *
7490565 AATCATACAAATAAATA-TATAATC
1 AATCATGCAAATATATATTATAA-C
7490589 ATATCATGCAAATATATATTATAA-
1 A-ATCATGCAAATATATATTATAAC
*
7490613 AATCATGCAAAGTATACATTA
1 AATCATGCAAA-TATATATTA
7490634 CAGCTAATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
23 10 0.26
24 10 0.26
25 14 0.36
26 5 0.13
ACGTcount: A:0.52, C:0.12, G:0.04, T:0.32
Consensus pattern (24 bp):
AATCATGCAAATATATATTATAAC
Found at i:7491616 original size:14 final size:15
Alignment explanation
Indices: 7491597--7491634 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
7491587 AATGATTTTA
7491597 TTGATTTCTGG-GAT
1 TTGATTTCTGGTGAT
*
7491611 TTGATTTGTGGTGAT
1 TTGATTTCTGGTGAT
7491626 TTGATTTCT
1 TTGATTTCT
7491635 TTCCTTTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 10 0.48
15 11 0.52
ACGTcount: A:0.13, C:0.05, G:0.26, T:0.55
Consensus pattern (15 bp):
TTGATTTCTGGTGAT
Found at i:7491802 original size:17 final size:19
Alignment explanation
Indices: 7491766--7491810 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
7491756 TTTTCTTATC
* *
7491766 TTTTTATTTTATTT-TCCT
1 TTTTTATTTTATTTGACTT
7491784 TTTTTATTTT-TTTGACTT
1 TTTTTATTTTATTTGACTT
7491802 TTTTTATTT
1 TTTTTATTT
7491811 ATGACTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 3 0.12
18 21 0.88
ACGTcount: A:0.11, C:0.07, G:0.02, T:0.80
Consensus pattern (19 bp):
TTTTTATTTTATTTGACTT
Found at i:7492562 original size:10 final size:10
Alignment explanation
Indices: 7492547--7492661 Score: 60
Period size: 10 Copynumber: 11.7 Consensus size: 10
7492537 GTATTAAACG
7492547 AAAAATTCTA
1 AAAAATTCTA
*
7492557 AAAAATTATA
1 AAAAATTCTA
* **
7492567 AGATTTTC-A
1 AAAAATTCTA
*
7492576 AAAAATTATA
1 AAAAATTCTA
*
7492586 AAAAA--GTA
1 AAAAATTCTA
* *
7492594 ATAAATT-TT
1 AAAAATTCTA
*
7492603 TAAAATTC-A
1 AAAAATTCTA
*
7492612 AAACAATTCAA
1 AAA-AATTCTA
*
7492623 AAAAAGTTCTT
1 AAAAA-TTCTA
*
7492634 AAAAATTTTA
1 AAAAATTCTA
7492644 AAAAATTCTTA
1 AAAAATTC-TA
7492655 AAAAATT
1 AAAAATT
7492662 AAGGAAACTT
Statistics
Matches: 76, Mismatches: 21, Indels: 15
0.68 0.19 0.13
Matches are distributed among these distances:
8 6 0.08
9 13 0.17
10 36 0.47
11 21 0.28
ACGTcount: A:0.58, C:0.06, G:0.03, T:0.33
Consensus pattern (10 bp):
AAAAATTCTA
Found at i:7492587 original size:29 final size:29
Alignment explanation
Indices: 7492547--7492607 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
7492537 GTATTAAACG
* *
7492547 AAAAATTCTAAAAAA-TTATAAGATTTTCA
1 AAAAATTATAAAAAAGTAATAA-ATTTTCA
*
7492576 AAAAATTATAAAAAAGTAATAAATTTTTA
1 AAAAATTATAAAAAAGTAATAAATTTTCA
7492605 AAA
1 AAA
7492608 TTCAAAACAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 23 0.82
30 5 0.18
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (29 bp):
AAAAATTATAAAAAAGTAATAAATTTTCA
Found at i:7492659 original size:11 final size:11
Alignment explanation
Indices: 7492622--7492661 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
7492612 AAACAATTCA
7492622 AAAAAAGTTCTT
1 AAAAAA-TTCTT
7492634 -AAAAATT-TT
1 AAAAAATTCTT
7492643 AAAAAATTCTT
1 AAAAAATTCTT
7492654 AAAAAATT
1 AAAAAATT
7492662 AAGGAAACTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 2 0.08
10 9 0.35
11 15 0.58
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (11 bp):
AAAAAATTCTT
Found at i:7492718 original size:35 final size:34
Alignment explanation
Indices: 7492670--7492738 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 34
7492660 TTAAGGAAAC
*
7492670 TTAAAAATCTTAAAAATATTCAAAATATTCAAAA
1 TTAAAAATCTTAAAAAAATTCAAAATATTCAAAA
* *
7492704 TTAATAAATTTTAAAAAAATTCAAAATTTTCAAAA
1 TTAA-AAATCTTAAAAAAATTCAAAATATTCAAAA
7492739 AAATGAAGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
34 4 0.13
35 27 0.87
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (34 bp):
TTAAAAATCTTAAAAAAATTCAAAATATTCAAAA
Found at i:7492751 original size:18 final size:18
Alignment explanation
Indices: 7492673--7492742 Score: 63
Period size: 19 Copynumber: 3.9 Consensus size: 18
7492663 AGGAAACTTA
* *
7492673 AAAATCTTAAAAATATTC
1 AAAATTTTAAAAAAATTC
* * *
7492691 AAAATATT--CAAAATTA
1 AAAATTTTAAAAAAATTC
7492707 ATAAATTTTAAAAAAATTC
1 A-AAATTTTAAAAAAATTC
7492726 AAAATTTTCAAAAAAAT
1 AAAATTTT-AAAAAAAT
7492743 GAAGATTTTA
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
16 6 0.15
17 6 0.15
18 14 0.34
19 15 0.37
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (18 bp):
AAAATTTTAAAAAAATTC
Found at i:7493207 original size:9 final size:9
Alignment explanation
Indices: 7493195--7493329 Score: 67
Period size: 9 Copynumber: 14.3 Consensus size: 9
7493185 TTTTATTATT
7493195 TTTTTAAAA
1 TTTTTAAAA
**
7493204 TTTTTTGAA
1 TTTTTAAAA
*
7493213 TATTTAAAA
1 TTTTTAAAA
* *
7493222 TTATTATAA
1 TTTTTAAAA
7493231 TTTTTAAAAA
1 TTTTT-AAAA
* * *
7493241 TATTTCATA
1 TTTTTAAAA
* *
7493250 TTTTT-TAT
1 TTTTTAAAA
7493258 TTTTTATAAA
1 TTTTTA-AAA
*
7493268 -ATTTAAAA
1 TTTTTAAAA
*
7493276 TATTTAAAATA
1 T-TTTTAAA-A
*
7493287 TTTTTTATAA
1 -TTTTTAAAA
7493297 TTTTATAAATA
1 TTTT-TAAA-A
7493308 TTTTTAGAAA
1 TTTTTA-AAA
7493318 TTTTTAAAA
1 TTTTTAAAA
7493327 TTT
1 TTT
7493330 AATTTTTTTA
Statistics
Matches: 91, Mismatches: 25, Indels: 20
0.67 0.18 0.15
Matches are distributed among these distances:
8 8 0.09
9 43 0.47
10 26 0.29
11 13 0.14
12 1 0.01
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:7493293 original size:21 final size:19
Alignment explanation
Indices: 7493269--7493327 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 19
7493259 TTTTATAAAA
7493269 TTTAAAATATTTAAAATATTT
1 TTTAAAAT-TTTAAAATA-TT
*
7493290 TTTATAATTTTATAAATATT
1 TTTAAAATTTTA-AAATATT
7493310 TTTAGAAATTTTTAAAAT
1 TTTA-AAA-TTTTAAAAT
7493328 TTAATTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 10 0.30
21 18 0.55
22 5 0.15
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (19 bp):
TTTAAAATTTTAAAATATT
Found at i:7493355 original size:18 final size:18
Alignment explanation
Indices: 7493310--7493365 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
7493300 TATAAATATT
*
7493310 TTTAGAAATTTT-TAAAA
1 TTTAGAATTTTTATAAAA
*
7493327 TTTA-ATTTTTTTATAAAA
1 TTTAGA-ATTTTTATAAAA
* *
7493345 TTTAGAATTTTGAGAAAA
1 TTTAGAATTTTTATAAAA
7493363 TTT
1 TTT
7493366 TTTGAGTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
16 1 0.03
17 8 0.26
18 21 0.68
19 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (18 bp):
TTTAGAATTTTTATAAAA
Found at i:7493430 original size:21 final size:21
Alignment explanation
Indices: 7493404--7493472 Score: 102
Period size: 21 Copynumber: 3.2 Consensus size: 21
7493394 TAGGATTTAC
*
7493404 AAAAAAATTTTAGAATCTTTTA
1 AAAAAAATTTTAGAAT-TTTTT
*
7493426 AAAAAAATTTTAAAATTTTTT
1 AAAAAAATTTTAGAATTTTTT
*
7493447 AAAAAATTTTTAGAATTTTTT
1 AAAAAAATTTTAGAATTTTTT
7493468 AAAAA
1 AAAAA
7493473 TTTTTAAGAA
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
21 28 0.65
22 15 0.35
ACGTcount: A:0.52, C:0.01, G:0.03, T:0.43
Consensus pattern (21 bp):
AAAAAAATTTTAGAATTTTTT
Found at i:7493477 original size:10 final size:10
Alignment explanation
Indices: 7493427--7493484 Score: 62
Period size: 10 Copynumber: 5.7 Consensus size: 10
7493417 AATCTTTTAA
*
7493427 AAAAAATTTT
1 AAAAATTTTT
*
7493437 AAAATTTTTT
1 AAAAATTTTT
7493447 AAAAAATTTTT
1 -AAAAATTTTT
* *
7493458 AGAATTTTTT
1 AAAAATTTTT
7493468 AAAAATTTTT
1 AAAAATTTTT
*
7493478 AAGAATT
1 AAAAATT
7493485 CTTTGAATTT
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
10 30 0.77
11 9 0.23
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (10 bp):
AAAAATTTTT
Found at i:7493477 original size:21 final size:21
Alignment explanation
Indices: 7493404--7493484 Score: 101
Period size: 21 Copynumber: 3.8 Consensus size: 21
7493394 TAGGATTTAC
* *
7493404 AAAAAAATTTTAGAATCTTTTA
1 AAAAAATTTTTAGAAT-TTTTT
* *
7493426 AAAAAAATTTTAAAATTTTTT
1 AAAAAATTTTTAGAATTTTTT
7493447 AAAAAATTTTTAGAATTTTTT
1 AAAAAATTTTTAGAATTTTTT
7493468 -AAAAATTTTTAAGAATT
1 AAAAAATTTTT-AGAATT
7493485 CTTTGAATTT
Statistics
Matches: 54, Mismatches: 4, Indels: 3
0.89 0.07 0.05
Matches are distributed among these distances:
20 10 0.19
21 29 0.54
22 15 0.28
ACGTcount: A:0.49, C:0.01, G:0.04, T:0.46
Consensus pattern (21 bp):
AAAAAATTTTTAGAATTTTTT
Found at i:7493500 original size:30 final size:31
Alignment explanation
Indices: 7493435--7493517 Score: 89
Period size: 30 Copynumber: 2.7 Consensus size: 31
7493425 AAAAAAAATT
* *
7493435 TTAAAATTTTTTAAAAAATTTTTAGAATTTT
1 TTAAAAATTTTTAAAAAATTTTTAGAATTTC
*
7493466 TTAAAAATTTTT-AAGAATTCTTT-GAATTTC
1 TTAAAAATTTTTAAAAAATT-TTTAGAATTTC
* *
7493496 TTAAAATTTTGTTGAAAAATTT
1 TTAAAAATTT-TTAAAAAATTT
7493518 CTTTTTATAT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
30 21 0.48
31 17 0.39
32 6 0.14
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.52
Consensus pattern (31 bp):
TTAAAAATTTTTAAAAAATTTTTAGAATTTC
Found at i:7493503 original size:10 final size:9
Alignment explanation
Indices: 7493428--7493505 Score: 50
Period size: 10 Copynumber: 7.9 Consensus size: 9
7493418 ATCTTTTAAA
*
7493428 AAAAATTTT
1 AAAATTTTT
7493437 AAAATTTTTT
1 AAAA-TTTTT
7493447 AAAAAATTTTT
1 --AAAATTTTT
*
7493458 AGAATTTTTT
1 A-AAATTTTT
7493468 AAAAATTTTT
1 -AAAATTTTT
7493478 AAGAATTCTTT
1 AA-AATT-TTT
*
7493489 -GAATTTCTT
1 AAAATTT-TT
7493498 AAAATTTT
1 AAAATTTT
7493506 GTTGAAAAAT
Statistics
Matches: 55, Mismatches: 5, Indels: 18
0.71 0.06 0.23
Matches are distributed among these distances:
8 1 0.02
9 14 0.25
10 27 0.49
11 9 0.16
12 4 0.07
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (9 bp):
AAAATTTTT
Found at i:7494306 original size:16 final size:15
Alignment explanation
Indices: 7494287--7494341 Score: 65
Period size: 16 Copynumber: 3.5 Consensus size: 15
7494277 TTTAAATTAT
7494287 ATGAATTTAATTATTC
1 ATGAATTTAA-TATTC
*
7494303 ATGAATCTAACTATTC
1 ATGAATTTAA-TATTC
*
7494319 ATGAACTTTAACATTC
1 ATGAA-TTTAATATTC
7494335 ATGAATT
1 ATGAATT
7494342 CATTGTATCT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
15 2 0.06
16 28 0.82
17 4 0.12
ACGTcount: A:0.38, C:0.13, G:0.07, T:0.42
Consensus pattern (15 bp):
ATGAATTTAATATTC
Found at i:7502934 original size:6 final size:6
Alignment explanation
Indices: 7502919--7502959 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
7502909 CGTAATTTTA
* *
7502919 AAAAAC AAAAAT AAAAAC AAAAAC AAAAGC AAAAAC AAAAA
1 AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAA
7502960 TTTGTTTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.83, C:0.12, G:0.02, T:0.02
Consensus pattern (6 bp):
AAAAAC
Found at i:7504113 original size:11 final size:11
Alignment explanation
Indices: 7504097--7504129 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
7504087 TTTGAAATTT
*
7504097 AATAAATTAAA
1 AATAAAATAAA
7504108 AATAAAATAAA
1 AATAAAATAAA
7504119 AATAAAATAAA
1 AATAAAATAAA
7504130 TAAAATTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (11 bp):
AATAAAATAAA
Found at i:7507267 original size:20 final size:22
Alignment explanation
Indices: 7507237--7507288 Score: 81
Period size: 22 Copynumber: 2.4 Consensus size: 22
7507227 ATATATAATT
7507237 ATATATTTATA-TTT-AAAAATA
1 ATAT-TTTATATTTTAAAAAATA
7507258 ATATTTTATATTTTAAAAAATA
1 ATATTTTATATTTTAAAAAATA
7507280 ATATTTTAT
1 ATATTTTAT
7507289 TAATTTCGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
20 6 0.21
21 7 0.24
22 16 0.55
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
ATATTTTATATTTTAAAAAATA
Found at i:7507553 original size:16 final size:15
Alignment explanation
Indices: 7507501--7507580 Score: 58
Period size: 16 Copynumber: 5.3 Consensus size: 15
7507491 GACCTGATCC
*
7507501 TTTATATATATATATA
1 TTTATATAT-TTTATA
* *
7507517 TATATTATTTTTTATTA
1 TTTA-TATATTTTA-TA
*
7507534 TTTATTTAATTTTATA
1 TTTATAT-ATTTTATA
7507550 TTTATATATTTTA-A
1 TTTATATATTTTATA
*
7507564 TTT-TAGA-TTTATA
1 TTTATATATTTTATA
7507577 TTTA
1 TTTA
7507581 AAAAAATAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
12 4 0.08
13 7 0.14
14 4 0.08
15 6 0.12
16 16 0.31
17 14 0.27
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.65
Consensus pattern (15 bp):
TTTATATATTTTATA
Found at i:7509256 original size:40 final size:42
Alignment explanation
Indices: 7509186--7509275 Score: 148
Period size: 40 Copynumber: 2.2 Consensus size: 42
7509176 TTTCTAGGCA
7509186 TAAGGGATTGATTTTGTACCTTACCCAATCGATCCCTTCTTG
1 TAAGGGATTGATTTTGTACCTTACCCAATCGATCCCTTCTTG
*
7509228 TAAGGGATTGA-TTT-TACCTTACCCAATCGATCCTTTCTTG
1 TAAGGGATTGATTTTGTACCTTACCCAATCGATCCCTTCTTG
*
7509268 CAAGGGAT
1 TAAGGGAT
7509276 CGATCCCTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
40 32 0.70
41 3 0.07
42 11 0.24
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (42 bp):
TAAGGGATTGATTTTGTACCTTACCCAATCGATCCCTTCTTG
Found at i:7518957 original size:22 final size:22
Alignment explanation
Indices: 7518929--7518974 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
7518919 TAATTTTTTA
*
7518929 ATAAACAAAATTGTTCATGATT
1 ATAAACAAAATTGTACATGATT
7518951 ATAAACAAAATTGTACATGATT
1 ATAAACAAAATTGTACATGATT
7518973 AT
1 AT
7518975 TGAAATCATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.35
Consensus pattern (22 bp):
ATAAACAAAATTGTACATGATT
Found at i:7521992 original size:3 final size:3
Alignment explanation
Indices: 7521984--7522053 Score: 74
Period size: 3 Copynumber: 23.7 Consensus size: 3
7521974 TGTACTATAG
* * *
7521984 ATT ATT ATT ATT ATT ATT ATTT ATT A-T ATT -GT ACT ATAG ATT ATT
1 ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT AT-T ATT ATT
7522029 ATT ATT ATT ATT ATT ATT ATT -TT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
7522054 GTATAAATAT
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
2 5 0.09
3 47 0.82
4 5 0.09
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:7522018 original size:39 final size:38
Alignment explanation
Indices: 7521969--7522048 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 38
7521959 TTTTTATATA
7521969 TATATTGTACTATAGATTATTATTATTATTATTATTTAT
1 TATATTGTACTATAGATTATTATTATTATTATTA-TTAT
7522008 TATATTGTACTATAGATTATTATTATTATTATTATTAT
1 TATATTGTACTATAGATTATTATTATTATTATTATTAT
7522046 TAT
1 TAT
7522049 TTTATGTATA
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
38 7 0.17
39 34 0.83
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.59
Consensus pattern (38 bp):
TATATTGTACTATAGATTATTATTATTATTATTATTAT
Found at i:7522772 original size:17 final size:20
Alignment explanation
Indices: 7522741--7522781 Score: 61
Period size: 18 Copynumber: 2.2 Consensus size: 20
7522731 TATTGATAGC
7522741 TAATTCTTTTGATTTAT-AA
1 TAATTCTTTTGATTTATCAA
7522760 TAATT-TTTT-ATTTATCAA
1 TAATTCTTTTGATTTATCAA
7522778 TAAT
1 TAAT
7522782 GTTAGGCTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 6 0.29
18 10 0.48
19 5 0.24
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (20 bp):
TAATTCTTTTGATTTATCAA
Found at i:7526400 original size:44 final size:44
Alignment explanation
Indices: 7526338--7526434 Score: 160
Period size: 44 Copynumber: 2.2 Consensus size: 44
7526328 TAAGCTGAAC
*
7526338 AAAAGTTT-TAAAGGGTTGAAACAGGCACTAAGATAATGGTATA
1 AAAAGTTTAAAAAGGGTTGAAACAGGCACTAAGATAATGGTATA
*
7526381 AAAAGTTTAAAAAGGGTTGAAACAGGTACTAAGATAATGGTATA
1 AAAAGTTTAAAAAGGGTTGAAACAGGCACTAAGATAATGGTATA
*
7526425 AGAAGTTTAA
1 AAAAGTTTAA
7526435 GTCAATCATA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
43 8 0.16
44 42 0.84
ACGTcount: A:0.46, C:0.05, G:0.23, T:0.26
Consensus pattern (44 bp):
AAAAGTTTAAAAAGGGTTGAAACAGGCACTAAGATAATGGTATA
Found at i:7537563 original size:14 final size:14
Alignment explanation
Indices: 7537544--7537574 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
7537534 GATTATTTCG
*
7537544 TTAAAAAATGATTT
1 TTAAAAAATAATTT
7537558 TTAAAAAATAATTT
1 TTAAAAAATAATTT
7537572 TTA
1 TTA
7537575 CATTTTTAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
TTAAAAAATAATTT
Found at i:7537786 original size:23 final size:23
Alignment explanation
Indices: 7537760--7537911 Score: 116
Period size: 23 Copynumber: 6.5 Consensus size: 23
7537750 CTTAAAAATA
7537760 ATATTATATAAATAAATAATATT
1 ATATTATATAAATAAATAATATT
* * *
7537783 ATATTAATAAAAATATAATAAAAAT
1 ATATT-ATATAAATA-AATAATATT
*
7537808 ATATTATA-AAATATTAATAA-ATA
1 ATATTATATAAATA--AATAATATT
* *
7537831 ATATTATA-ATATTGAAAATAGTATT
1 ATATTATATA-AAT--AAATAATATT
*
7537856 ATATTA-ATAAATAAATATTATT
1 ATATTATATAAATAAATAATATT
* *
7537878 ATAATATATTAATAAATAATA-T
1 ATATTATATAAATAAATAATATT
7537900 ACTATTATATAA
1 A-TATTATATAA
7537912 TATATTAATA
Statistics
Matches: 104, Mismatches: 15, Indels: 20
0.75 0.11 0.14
Matches are distributed among these distances:
22 16 0.15
23 40 0.38
24 26 0.25
25 21 0.20
26 1 0.01
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (23 bp):
ATATTATATAAATAAATAATATT
Found at i:7537801 original size:11 final size:11
Alignment explanation
Indices: 7537787--7537839 Score: 61
Period size: 11 Copynumber: 4.5 Consensus size: 11
7537777 AATATTATAT
7537787 TAATAAAAATA
1 TAATAAAAATA
7537798 TAATAAAAATA
1 TAATAAAAATA
*
7537809 TATTATAAAATA
1 TAATA-AAAATA
7537821 TTAATAAATAATA
1 -TAATAAA-AATA
*
7537834 TTATAA
1 TAATAA
7537840 TATTGAAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
11 15 0.42
12 13 0.36
13 8 0.22
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
TAATAAAAATA
Found at i:7537808 original size:35 final size:36
Alignment explanation
Indices: 7537751--7537876 Score: 130
Period size: 35 Copynumber: 3.5 Consensus size: 36
7537741 ATAATTTTAC
*
7537751 TTAA-AAATAATATTATATAAATAAATAATATTATA
1 TTAATAAATAATATTATAAAAATAAATAATATTATA
* * * **
7537786 TTAATAAA-AATATAATAAAAATATATTATAAAATA
1 TTAATAAATAATATTATAAAAATAAATAATATTATA
* * *
7537821 TTAATAAATAATATTATAATATTGAAAATAGTATTATA
1 TTAATAAATAATATTATAAAAAT--AAATAATATTATA
7537859 TTAATAAATAAATATTAT
1 TTAATAAAT-AATATTAT
7537877 TATAATATAT
Statistics
Matches: 72, Mismatches: 14, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
35 33 0.46
36 14 0.19
38 17 0.24
39 8 0.11
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.40
Consensus pattern (36 bp):
TTAATAAATAATATTATAAAAATAAATAATATTATA
Found at i:7537821 original size:10 final size:11
Alignment explanation
Indices: 7537808--7537970 Score: 68
Period size: 10 Copynumber: 15.5 Consensus size: 11
7537798 TAATAAAAAT
7537808 ATATTATAA-A
1 ATATTATAATA
7537818 ATATTAATAAATA
1 ATATT-AT-AATA
7537831 ATATTATAAT-
1 ATATTATAATA
* *
7537841 AT-TGAAAATA
1 ATATTATAATA
* *
7537851 GTATTATATTA
1 ATATTATAATA
*
7537862 ATA-AAT-A-A
1 ATATTATAATA
*
7537870 ATATTATTATA
1 ATATTATAATA
7537881 ATA-TATTAATA
1 ATATTA-TAATA
*
7537892 A-ATAAT-ATA
1 ATATTATAATA
*
7537901 CTATTAT-ATA
1 ATATTATAATA
7537911 ATA-TATTAATA
1 ATATTA-TAATA
*
7537922 A-ATAATAA-A
1 ATATTATAATA
*
7537931 ATTATTATTAT-
1 A-TATTATAATA
7537942 ATATTAATAAATA
1 ATATT-AT-AATA
7537955 ATATTATAAT-
1 ATATTATAATA
7537965 ATATTA
1 ATATTA
7537971 ATAAATACTT
Statistics
Matches: 114, Mismatches: 19, Indels: 40
0.66 0.11 0.23
Matches are distributed among these distances:
8 4 0.04
9 14 0.12
10 39 0.34
11 38 0.33
12 8 0.07
13 11 0.10
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.44
Consensus pattern (11 bp):
ATATTATAATA
Found at i:7537840 original size:95 final size:95
Alignment explanation
Indices: 7537751--7537928 Score: 235
Period size: 91 Copynumber: 1.9 Consensus size: 95
7537741 ATAATTTTAC
7537751 TTAAAAATAATATTATATAAATAAAT-AATATTA-TATTAATA-A-AAATATAATAAAAATA-TA
1 TTAAAAATAATATTATATAAATAAATAAATATTATTA-TAATATATAAATA-AAT-AAAATACTA
7537811 TTATA-AA-ATATTAATAAATAATATTATAATA
63 TTATATAATATATTAATAAATAATATTATAATA
* * * * *
7537842 TTGAAAATAGTATTATATTAATAAATAAATATTATTATAATATATTAATAAATAATATACTATTA
1 TTAAAAATAATATTATATAAATAAATAAATATTATTATAATATATAAATAAATAAAATACTATTA
7537907 TATAATATATTAATAAATAATA
66 TATAATATATTAATAAATAATA
7537929 AAATTATTAT
Statistics
Matches: 75, Mismatches: 5, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
91 23 0.31
92 17 0.23
93 13 0.17
94 6 0.08
95 16 0.21
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.40
Consensus pattern (95 bp):
TTAAAAATAATATTATATAAATAAATAAATATTATTATAATATATAAATAAATAAAATACTATTA
TATAATATATTAATAAATAATATTATAATA
Found at i:7537855 original size:20 final size:19
Alignment explanation
Indices: 7537801--7537966 Score: 95
Period size: 21 Copynumber: 8.0 Consensus size: 19
7537791 AAAAATATAA
7537801 TAAAAATATATTATAAAATAT
1 TAAAAATATATTAT--AATAT
7537822 TAATAAATAATATTATAATAT
1 TAA-AAAT-ATATTATAATAT
* *
7537843 TGAAAATAGTATTATATTAAT
1 TAAAAATA-TATTATAAT-AT
*
7537864 AAATAAATATTATTATAATATAT
1 TAA-AAATA-TATTAT-A-ATAT
*
7537887 TAATAAATA-A-TATACTAT
1 TAA-AAATATATTATAATAT
* *
7537905 TATATAATATATTAATAAATAA
1 TA-AAAATATATT-AT-AATAT
*
7537927 TAAAATTATTATTAT-ATAT
1 TAAAAATA-TATTATAATAT
7537946 TAATAAATAATATTATAATAT
1 TAA-AAAT-ATATTATAATAT
7537967 ATTAATAAAT
Statistics
Matches: 114, Mismatches: 15, Indels: 32
0.71 0.09 0.20
Matches are distributed among these distances:
18 9 0.08
19 10 0.09
20 25 0.22
21 27 0.24
22 24 0.21
23 18 0.16
24 1 0.01
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (19 bp):
TAAAAATATATTATAATAT
Found at i:7537874 original size:62 final size:59
Alignment explanation
Indices: 7537765--7537966 Score: 188
Period size: 53 Copynumber: 3.4 Consensus size: 59
7537755 AAATAATATT
* * *
7537765 ATATAAATAAATAATATTATATTAATAAAA-ATA-TAA-TAA-AAAT--ATATTATAAA
1 ATATTAATAAATAATATTATAATATTAAAATATATTAATTAATAAATAAATATTATAAA
7537818 ATATTAATAAATAATATTATAATATTGAAAATAGTATTATATTAATAAATAAATATTATTATAA
1 ATATTAATAAATAATATTATAATATT-AAAATA-TATTA-ATTAATAAATAAATATTA-TA-AA
* * * * *
7537882 TATATTAATAAATAATA-TACTATTA-TATAATATATTAATAAAT-AATAAAATTATTATTAT
1 -ATATTAATAAATAATATTA-TAATATTAAAATATATTAATTAATAAAT-AAA-TATTATAAA
7537942 ATATTAATAAATAATATTATAATAT
1 ATATTAATAAATAATATTATAATAT
7537967 ATTAATAAAT
Statistics
Matches: 123, Mismatches: 9, Indels: 27
0.77 0.06 0.17
Matches are distributed among these distances:
53 23 0.19
54 4 0.03
55 1 0.01
56 2 0.02
57 2 0.02
58 1 0.01
59 23 0.19
60 10 0.08
61 9 0.07
62 16 0.13
63 7 0.06
64 5 0.04
65 20 0.16
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (59 bp):
ATATTAATAAATAATATTATAATATTAAAATATATTAATTAATAAATAAATATTATAAA
Found at i:7537888 original size:65 final size:61
Alignment explanation
Indices: 7537782--7537966 Score: 214
Period size: 65 Copynumber: 2.9 Consensus size: 61
7537772 TAAATAATAT
*
7537782 TATATTAATAAAAATATAATAAAAATATATTATAAAATATTAATAAATAATATTATAATATTGAA
1 TATATTAAT--AAATA-AAT-AAAAT-TATTATAATATATTAATAAATAATATTATAATATT-AA
7537847 AA
60 AA
* * *
7537849 TAGTATTATATTAATAAATAAATATTATTATAATATATTAATAAATAATA-TACTATTA-TATAA
1 TA-TATTA-ATAAATAAATAAA-ATTATTATAATATATTAATAAATAATATTA-TAATATTAAAA
*
7537912 TATATTAATAAAT-AATAAAATTATTATTATATATTAATAAATAATATTATAATAT
1 TATATTAATAAATAAATAAAATTATTATAATATATTAATAAATAATATTATAATAT
7537967 ATTAATAAAT
Statistics
Matches: 105, Mismatches: 7, Indels: 19
0.80 0.05 0.15
Matches are distributed among these distances:
59 30 0.29
60 8 0.08
61 5 0.05
62 5 0.05
63 5 0.05
64 3 0.03
65 31 0.30
66 5 0.05
67 6 0.06
68 5 0.05
69 2 0.02
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.42
Consensus pattern (61 bp):
TATATTAATAAATAAATAAAATTATTATAATATATTAATAAATAATATTATAATATTAAAA
Found at i:7537967 original size:57 final size:55
Alignment explanation
Indices: 7537836--7537967 Score: 165
Period size: 57 Copynumber: 2.3 Consensus size: 55
7537826 AAATAATATT
* * *
7537836 ATAATATTGAAAATAGTATTATATTAATAAATAAATATTATTATAATATATTAATAA
1 ATAATATT-ATAATA-TAATATATTAATAAATAAAAATTATTATAATATATTAATAA
* *
7537893 ATAATATACTATTATATAATATATTAATAAATAATAAAATTATTATTATATATTAATAA
1 ATAATAT--TATAATATAATATATTAATAAAT-A-AAAATTATTATAATATATTAATAA
7537952 ATAATATTATAATATA
1 ATAATATTATAATATA
7537968 TTAATAAATA
Statistics
Matches: 65, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
57 30 0.46
58 5 0.08
59 30 0.46
ACGTcount: A:0.55, C:0.01, G:0.02, T:0.43
Consensus pattern (55 bp):
ATAATATTATAATATAATATATTAATAAATAAAAATTATTATAATATATTAATAA
Found at i:7537968 original size:59 final size:58
Alignment explanation
Indices: 7537855--7537973 Score: 170
Period size: 59 Copynumber: 2.0 Consensus size: 58
7537845 AAAATAGTAT
* *
7537855 TATATTAATAAATAAATATTATTATAATATATTAATAAATAATATACTATTATA-TAA
1 TATATTAATAAATAAAAATTATTATAATATATTAATAAATAATATACTAATATATTAA
*
7537912 TATATTAATAAATAATAAAATTATTATTATATATTAATAAATAATATTA-TAATATATTAA
1 TATATTAATAAAT-A-AAAATTATTATAATATATTAATAAATAATA-TACTAATATATTAA
7537972 TA
1 TA
7537974 AATACTTTTA
Statistics
Matches: 55, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
57 13 0.24
58 1 0.02
59 34 0.62
60 7 0.13
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.45
Consensus pattern (58 bp):
TATATTAATAAATAAAAATTATTATAATATATTAATAAATAATATACTAATATATTAA
Found at i:7537984 original size:23 final size:23
Alignment explanation
Indices: 7537865--7537977 Score: 100
Period size: 29 Copynumber: 4.3 Consensus size: 23
7537855 TATATTAATA
*
7537865 AATAAATATTATTATAATATATT
1 AATAAATAATATTATAATATATT
7537888 AATAAATAATATACTATTATATAATATATT
1 AAT--A-AATA-A-TA-T-TATAATATATT
7537918 AATAAATAATAAAATTATTATTATATATT
1 AATAAATAATA---TTA-TA--ATATATT
7537947 AATAAATAATATTATAATATATT
1 AATAAATAATATTATAATATATT
7537970 AATAAATA
1 AATAAATA
7537978 CTTTTATTTT
Statistics
Matches: 76, Mismatches: 2, Indels: 24
0.75 0.02 0.24
Matches are distributed among these distances:
23 18 0.24
25 5 0.07
26 10 0.13
27 7 0.09
28 3 0.04
29 19 0.25
30 14 0.18
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (23 bp):
AATAAATAATATTATAATATATT
Found at i:7538067 original size:17 final size:16
Alignment explanation
Indices: 7538007--7538112 Score: 61
Period size: 18 Copynumber: 6.0 Consensus size: 16
7537997 TATATTAAAC
7538007 ATAATATTTTAATATTAA
1 ATAAT-TTTTAATATT-A
* *
7538025 ATATCATTATTAAAATATA
1 ATA--ATTTTTAATAT-TA
*
7538044 ATTATTTTTTAATATTA
1 A-TAATTTTTAATATTA
*
7538061 ATAA-TTTTAATAATAA
1 ATAATTTTTAAT-ATTA
7538077 ATAATTTTTAATAATTTA
1 ATAATTTTTAAT-A-TTA
*
7538095 ATAGTTGTATTAATATTA
1 ATAATT-T-TTAATATTA
7538113 TTTTAAAAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
15 7 0.10
16 9 0.13
17 12 0.17
18 21 0.30
19 11 0.16
20 10 0.14
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.51
Consensus pattern (16 bp):
ATAATTTTTAATATTA
Found at i:7538070 original size:15 final size:16
Alignment explanation
Indices: 7538038--7538089 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
7538028 TCATTATTAA
* *
7538038 AATATAATTATTTTTT
1 AATATAAATAATTTTT
*
7538054 AATATTAATAA-TTTT
1 AATATAAATAATTTTT
7538069 AATAATAAATAATTTTT
1 AAT-ATAAATAATTTTT
7538086 AATA
1 AATA
7538090 ATTTAATAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
15 7 0.23
16 16 0.53
17 7 0.23
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
AATATAAATAATTTTT
Found at i:7538086 original size:32 final size:35
Alignment explanation
Indices: 7538007--7538089 Score: 93
Period size: 32 Copynumber: 2.4 Consensus size: 35
7537997 TATATTAAAC
7538007 ATAATATTTTAATATTAAATATCATTATTAAAATATA
1 ATAAT-TTTTAATATTAAATA-CATTATTAAAATATA
*
7538044 ATTATTTTTTAATATT-AATA-ATT-TTAATAATA-A
1 A-TAATTTTTAATATTAAATACATTATTAA-AATATA
7538077 ATAATTTTTAATA
1 ATAATTTTTAATA
7538090 ATTTAATAGT
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
32 11 0.26
33 6 0.14
34 7 0.17
36 4 0.10
37 11 0.26
38 3 0.07
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (35 bp):
ATAATTTTTAATATTAAATACATTATTAAAATATA
Found at i:7539006 original size:26 final size:26
Alignment explanation
Indices: 7538970--7539021 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
7538960 GCTGCAAGCT
7538970 TCTTTAATTTCACTAGAATTAAAAAA
1 TCTTTAATTTCACTAGAATTAAAAAA
7538996 TCTTTAATTTCACTAGAATTAAAAAA
1 TCTTTAATTTCACTAGAATTAAAAAA
7539022 ATTCAAGTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.46, C:0.12, G:0.04, T:0.38
Consensus pattern (26 bp):
TCTTTAATTTCACTAGAATTAAAAAA
Found at i:7539495 original size:37 final size:34
Alignment explanation
Indices: 7539454--7539554 Score: 96
Period size: 35 Copynumber: 2.9 Consensus size: 34
7539444 CAAATTCATA
*
7539454 TATATATAAATTTTTATTTTCATATATATATGTAAAT
1 TATATATAAA-TTTTATTTTCATATATATA--AAAAT
* *
7539491 TATATATAAA-TTAATTTACATATATATAAAAAT
1 TATATATAAATTTTATTTTCATATATATAAAAAT
* * * *
7539524 TAAAAATAAAATTATATTTTTATATATATAA
1 TATATAT-AAATTTTATTTTCATATATATAA
7539555 TTTTTAATTT
Statistics
Matches: 53, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
33 9 0.17
34 3 0.06
35 31 0.58
37 10 0.19
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.48
Consensus pattern (34 bp):
TATATATAAATTTTATTTTCATATATATAAAAAT
Found at i:7543627 original size:20 final size:19
Alignment explanation
Indices: 7543602--7543645 Score: 70
Period size: 20 Copynumber: 2.3 Consensus size: 19
7543592 TCAAACTGAA
*
7543602 TTATATATTTTTATTAATTT
1 TTATATATTTTT-TGAATTT
7543622 TTATATATTTTTTGAATTT
1 TTATATATTTTTTGAATTT
7543641 TTATA
1 TTATA
7543646 AAATAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (19 bp):
TTATATATTTTTTGAATTT
Found at i:7544143 original size:13 final size:13
Alignment explanation
Indices: 7544125--7544150 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7544115 CCTTATTGAA
7544125 ATATATATATAAT
1 ATATATATATAAT
7544138 ATATATATATAAT
1 ATATATATATAAT
7544151 CTAAATTGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
ATATATATATAAT
Found at i:7553723 original size:87 final size:87
Alignment explanation
Indices: 7553624--7553892 Score: 484
Period size: 87 Copynumber: 3.1 Consensus size: 87
7553614 CCCTCTAAAT
* * * *
7553624 TTTCTTTTGAAAATACCCACATAGCAAATACCAAATTTAGCTTTTAGTAAATGATAAAAATACCC
1 TTTCTTCTGAAAATACCCACATAGCAAATAACAATTTTAGCTTTTAGTAAATGATAAAAATATCC
*
7553689 TCAATAGCTTATACACCCAACC
66 TTAATAGCTTATACACCCAACC
7553711 TTTCTTCTGAAAATACCCACATAGCAAATAACAATTTTAGCTTTTAGTAAATGATAAAAATATCC
1 TTTCTTCTGAAAATACCCACATAGCAAATAACAATTTTAGCTTTTAGTAAATGATAAAAATATCC
7553776 TTAATAGCTTATACACCCAACC
66 TTAATAGCTTATACACCCAACC
7553798 TTTCTTCTGAAAATACCCACATAGCAAATAACAATTTTAGCTTTTAGTAAATGATAAAAATATCC
1 TTTCTTCTGAAAATACCCACATAGCAAATAACAATTTTAGCTTTTAGTAAATGATAAAAATATCC
7553863 TTAATAGCTTATACACCCAACC
66 TTAATAGCTTATACACCCAACC
*
7553885 TTTTTTCT
1 TTTCTTCT
7553893 TCTTTTGAAT
Statistics
Matches: 176, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
87 176 1.00
ACGTcount: A:0.39, C:0.21, G:0.07, T:0.33
Consensus pattern (87 bp):
TTTCTTCTGAAAATACCCACATAGCAAATAACAATTTTAGCTTTTAGTAAATGATAAAAATATCC
TTAATAGCTTATACACCCAACC
Found at i:7554074 original size:33 final size:33
Alignment explanation
Indices: 7554037--7554107 Score: 92
Period size: 34 Copynumber: 2.2 Consensus size: 33
7554027 TAATTCTCGA
*
7554037 AAATTCA-TTTCGAGAATTATGA-TATATTCTTGG
1 AAATTCATTTTCGAGAATTA-CATTATATTCTT-G
*
7554070 AAATTCATTTTCGAGATTTACATTATATTCTTG
1 AAATTCATTTTCGAGAATTACATTATATTCTTG
7554103 AAATT
1 AAATT
7554108 TTATTTTCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
33 14 0.41
34 20 0.59
ACGTcount: A:0.34, C:0.10, G:0.11, T:0.45
Consensus pattern (33 bp):
AAATTCATTTTCGAGAATTACATTATATTCTTG
Found at i:7557307 original size:146 final size:146
Alignment explanation
Indices: 7557106--7557650 Score: 534
Period size: 145 Copynumber: 3.7 Consensus size: 146
7557096 TTAAAACACC
* * * * * * *
7557106 AAAAATTATTAAATATTATAAAATTAAAAT-TTAAAAGTTTCATGAAAATCCGAGCTCGAAAAGG
1 AAAAATCATGAAATATTATGAAATTAAGATCTAAAAAGTTTCATGAAAATCTGAGCTAGAAAAGG
*
7557170 TCAAATTACAAAAAATACCCTTATAAGGGTATTTTGGTAATTTCACACTTTTTAGGGTACTACTA
66 TCAAATTACAAAAAATACACTTATAAGGGTATTTTGGTAATTTCACACTTTTTAGGGTACTACTA
*
7557235 TGATTTCAAATGCACC
131 TGATTTCAAATGCACA
* **
7557251 AAAAATCATGAAATATTATGAAATTAAGATCTAAAAAGTTTCATGAAAATCTGAGCTTGTGAAGG
1 AAAAATCATGAAATATTATGAAATTAAGATCTAAAAAGTTTCATGAAAATCTGAGCTAGAAAAGG
* * * * * * * *
7557316 TCAAATTAC-GAAAATACATTTTTAAGGGTATTTCGATAATTTTACACTTTTTAAGGTACTACTG
66 TCAAATTACAAAAAATACACTTATAAGGGTATTTTGGTAATTTCACACTTTTTAGGGTACTACTA
**
7557380 TGATTTCAAATATACA
131 TGATTTCAAATGCACA
* *
7557396 AAAAATCATGAAATATTATGAAGTTAAGATCTAAAAAATTTCATGAAAAT-TCGAGCTTAGAAAA
1 AAAAATCATGAAATATTATGAAATTAAGATCTAAAAAGTTTCATGAAAATCT-GAGC-TAGAAAA
* ** * * *
7557460 -GTTAAATTACAAAAAA-ATTCTTAT-AGGAGTATTTTGGTAATTTCATA-TTTCTCGAGGTACT
64 GGTCAAATTACAAAAAATACACTTATAAGG-GTATTTTGGTAATTTCACACTTTTTAG-GGTA--
* * * * *
7557521 GCTGCTATAATTTTAAGTGCATA
125 -CTACTATGATTTCAAATGCACA
* * * * * *
7557544 AAAAATCATGAAATATTAAGAAATTGAGATCTGAAAAGTTTCATGAAAATTTGAGCTTAAAAAAC
1 AAAAATCATGAAATATTATGAAATTAAGATCTAAAAAGTTTCATGAAAATCTGAGC-TAGAAAAG
* * * *
7557609 CT-AAATTAC-AAAAATATCTCGTATAA-GGTATTTTAGTAATTT
65 GTCAAATTACAAAAAATA-CACTTATAAGGGTATTTTGGTAATTT
7557651 TGTACTTTCC
Statistics
Matches: 329, Mismatches: 57, Indels: 25
0.80 0.14 0.06
Matches are distributed among these distances:
144 8 0.02
145 169 0.51
146 46 0.14
147 5 0.02
148 92 0.28
149 8 0.02
150 1 0.00
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.34
Consensus pattern (146 bp):
AAAAATCATGAAATATTATGAAATTAAGATCTAAAAAGTTTCATGAAAATCTGAGCTAGAAAAGG
TCAAATTACAAAAAATACACTTATAAGGGTATTTTGGTAATTTCACACTTTTTAGGGTACTACTA
TGATTTCAAATGCACA
Found at i:7557641 original size:293 final size:290
Alignment explanation
Indices: 7557106--7557641 Score: 636
Period size: 293 Copynumber: 1.8 Consensus size: 290
7557096 TTAAAACACC
* * * * *
7557106 AAAAATTATTAAATATTATAAAATTAAAATTTAAAAGTTTCATGAAAATCCGAGCTCGAAAAGGT
1 AAAAATCATGAAATATTATAAAATTAAAATTAAAAAATTTCATGAAAATCCGAGCTAGAAAAGGT
*
7557171 CAAATTACAAAAAATACCCTTATAAGGGTATTTTGGTAATTTCACACTTTTTAGGGTACTACTAT
66 CAAATTACAAAAAATACCCTTATAAGGGTATTTTGGTAATTTCACACTTTCTAGGGTACTACTAT
* * *
7557236 GATTTCAAATGCACCAAAAATCATGAAATATTATGAAATTAAGATCTAAAAAGTTTCATGAAAAT
131 AATTTCAAATGCACAAAAAATCATGAAATATTAAGAAATTAAGATCTAAAAAGTTTCATGAAAAT
*** ** * * *
7557301 CTGAGCTTGTGAAGGTCAAATTACGAAAATACATTTTTAAGGGTATTTCGATAATTTTACACTTT
196 CTGAGCTTAAAAACCTCAAATTACAAAAATACATGTATAAGGGTATTTCGATAATTTTACACTTT
7557366 TTAAGGTACTACTGTGATTTCAAATATACA
261 TTAAGGTACTACTGTGATTTCAAATATACA
* * * *
7557396 AAAAATCATGAAATATTATGAAGTTAAGATCTAAAAAATTTCATGAAAATTCGAGCTTAGAAAA-
1 AAAAATCATGAAATATTATAAAATTAAAAT-TAAAAAATTTCATGAAAATCCGAGC-TAGAAAAG
* ** * *
7557460 GTTAAATTACAAAAAA-ATTCTTAT-AGGAGTATTTTGGTAATTTCATA-TTTCTCGAGGTACTG
64 GTCAAATTACAAAAAATACCCTTATAAGG-GTATTTTGGTAATTTCACACTTTCTAG-GGTA---
* * * * * *
7557522 CTGCTATAATTTTAAGTGCATAAAAAATCATGAAATATTAAGAAATTGAGATCTGAAAAGTTTCA
124 CTACTATAATTTCAAATGCACAAAAAATCATGAAATATTAAGAAATTAAGATCTAAAAAGTTTCA
*
7557587 TGAAAATTTGAGCTTAAAAAACCT-AAATTACAAAAATATC-TCGTATAA-GGTATTT
189 TGAAAATCTGAGCTT-AAAAACCTCAAATTACAAAAATA-CAT-GTATAAGGGTATTT
7557642 TAGTAATTTT
Statistics
Matches: 203, Mismatches: 33, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
289 8 0.04
290 53 0.26
291 37 0.18
292 6 0.03
293 91 0.45
294 8 0.04
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.34
Consensus pattern (290 bp):
AAAAATCATGAAATATTATAAAATTAAAATTAAAAAATTTCATGAAAATCCGAGCTAGAAAAGGT
CAAATTACAAAAAATACCCTTATAAGGGTATTTTGGTAATTTCACACTTTCTAGGGTACTACTAT
AATTTCAAATGCACAAAAAATCATGAAATATTAAGAAATTAAGATCTAAAAAGTTTCATGAAAAT
CTGAGCTTAAAAACCTCAAATTACAAAAATACATGTATAAGGGTATTTCGATAATTTTACACTTT
TTAAGGTACTACTGTGATTTCAAATATACA
Found at i:7558371 original size:34 final size:33
Alignment explanation
Indices: 7558333--7558396 Score: 101
Period size: 34 Copynumber: 1.9 Consensus size: 33
7558323 TCAATGATTT
*
7558333 TTGAAACTTTTCAAAAATGGATATCCAAAAATCA
1 TTGAAACTTCTCAAAAATGGAT-TCCAAAAATCA
*
7558367 TTGAAACTTCTCAAAAATGGATTCTAAAAA
1 TTGAAACTTCTCAAAAATGGATTCCAAAAA
7558397 ATTTTTAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
33 7 0.25
34 21 0.75
ACGTcount: A:0.47, C:0.14, G:0.09, T:0.30
Consensus pattern (33 bp):
TTGAAACTTCTCAAAAATGGATTCCAAAAATCA
Found at i:7559911 original size:6 final size:6
Alignment explanation
Indices: 7559900--7559930 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
7559890 GAAGGAAAAA
*
7559900 AATTTT AATTTT AATTTT AATTTT AAATTT A
1 AATTTT AATTTT AATTTT AATTTT AATTTT A
7559931 TTAAATATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (6 bp):
AATTTT
Found at i:7564404 original size:15 final size:15
Alignment explanation
Indices: 7564384--7564414 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7564374 GGGGTTTCAA
7564384 GATTTTGGAGTTTTG
1 GATTTTGGAGTTTTG
*
7564399 GATTTTGGGGTTTTG
1 GATTTTGGAGTTTTG
7564414 G
1 G
7564415 TTTGAGTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.10, C:0.00, G:0.39, T:0.52
Consensus pattern (15 bp):
GATTTTGGAGTTTTG
Found at i:7564529 original size:17 final size:17
Alignment explanation
Indices: 7564504--7564548 Score: 81
Period size: 17 Copynumber: 2.6 Consensus size: 17
7564494 AGGGCTTGAA
*
7564504 TTTTAGGGTTTGGAAGG
1 TTTTGGGGTTTGGAAGG
7564521 TTTTGGGGTTTGGAAGG
1 TTTTGGGGTTTGGAAGG
7564538 TTTTGGGGTTT
1 TTTTGGGGTTT
7564549 TAATTTTAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.11, C:0.00, G:0.42, T:0.47
Consensus pattern (17 bp):
TTTTGGGGTTTGGAAGG
Found at i:7564530 original size:47 final size:47
Alignment explanation
Indices: 7564474--7564578 Score: 131
Period size: 47 Copynumber: 2.2 Consensus size: 47
7564464 GGGTTTTGAT
* *
7564474 TTTTAGGGTTTGG-GGGTCTTAGGGCTTGAATTTTAGGGTTTGGAAGG
1 TTTTAGGGTTTGGAAGGTCTTAGGGCTTGAATTTTAGGGTTT-GAAGA
* * * * *
7564521 TTTTGGGGTTTGGAAGGTTTTGGGGTTTTAATTTTAGGGTTTGAAGA
1 TTTTAGGGTTTGGAAGGTCTTAGGGCTTGAATTTTAGGGTTTGAAGA
7564568 TTTTAGGGTTT
1 TTTTAGGGTTT
7564579 TGATTTTAAG
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
47 26 0.53
48 23 0.47
ACGTcount: A:0.15, C:0.02, G:0.37, T:0.46
Consensus pattern (47 bp):
TTTTAGGGTTTGGAAGGTCTTAGGGCTTGAATTTTAGGGTTTGAAGA
Found at i:7564560 original size:14 final size:14
Alignment explanation
Indices: 7564538--7564606 Score: 66
Period size: 14 Copynumber: 4.8 Consensus size: 14
7564528 GTTTGGAAGG
*
7564538 TTTTGGGGTTTTAA
1 TTTTAGGGTTTTAA
*
7564552 TTTTAGGGTTTGAAGA
1 TTTTAGGGTTT-TA-A
*
7564568 TTTTAGGGTTTTGA
1 TTTTAGGGTTTTAA
*
7564582 TTTTAAGGTTTTAA
1 TTTTAGGGTTTTAA
* *
7564596 CTTTATGGTTT
1 TTTTAGGGTTT
7564607 GAGGTTTGAG
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
14 32 0.71
15 1 0.02
16 12 0.27
ACGTcount: A:0.19, C:0.01, G:0.25, T:0.55
Consensus pattern (14 bp):
TTTTAGGGTTTTAA
Found at i:7564572 original size:16 final size:17
Alignment explanation
Indices: 7564503--7564578 Score: 79
Period size: 17 Copynumber: 4.7 Consensus size: 17
7564493 TAGGGCTTGA
7564503 ATTTTAGGGTTTGGAAG
1 ATTTTAGGGTTTGGAAG
* *
7564520 GTTTTGGGGTTTGGAAG
1 ATTTTAGGGTTTGGAAG
* * *
7564537 GTTTTGGGGTTT--TA-
1 ATTTTAGGGTTTGGAAG
7564551 ATTTTAGGGTTT-GAAG
1 ATTTTAGGGTTTGGAAG
7564567 ATTTTAGGGTTT
1 ATTTTAGGGTTT
7564579 TGATTTTAAG
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
14 10 0.20
15 2 0.04
16 12 0.24
17 27 0.53
ACGTcount: A:0.17, C:0.00, G:0.36, T:0.47
Consensus pattern (17 bp):
ATTTTAGGGTTTGGAAG
Found at i:7564579 original size:30 final size:31
Alignment explanation
Indices: 7564503--7564592 Score: 92
Period size: 30 Copynumber: 2.8 Consensus size: 31
7564493 TAGGGCTTGA
* *
7564503 ATTTTAGGGTTTGGAAGGTTTTGGGGTTTGGAAG
1 ATTTTAGGGTTT-TAA--TTTTAGGGTTTGGAAG
* *
7564537 GTTTTGGGGTTTTAATTTTAGGGTTT-GAAG
1 ATTTTAGGGTTTTAATTTTAGGGTTTGGAAG
* *
7564567 ATTTTAGGGTTTTGATTTTAAGGTTT
1 ATTTTAGGGTTTTAATTTTAGGGTTT
7564593 TAACTTTATG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
30 26 0.54
31 10 0.21
33 2 0.04
34 10 0.21
ACGTcount: A:0.18, C:0.00, G:0.33, T:0.49
Consensus pattern (31 bp):
ATTTTAGGGTTTTAATTTTAGGGTTTGGAAG
Done.