Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25818110
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 67000 characters in sequence are not A, C, G, or T
File 38 of 127
Found at i:7751821 original size:173 final size:171
Alignment explanation
Indices: 7751504--7751836 Score: 517
Period size: 173 Copynumber: 1.9 Consensus size: 171
7751494 TGACAGACAA
* *
7751504 AGAGTTGCCGCTATTATAGTAACAGTGCCCATGTCAGAGGGTGACACTGTTACCAGACCTAACTT
1 AGAGTTGCCACTATTACAGTAACAGTGCCCATGTCAGAGGGTGACACTGTTACCAGACCTAACTT
* *
7751569 TAGCATATATGAATAATTGGACAGCAAAGGTACTGTACTAGTTTTGGTGTTCCTAGGAACTTAAT
66 TAGCATATATGAATAATTGGACAGCAAAAGTACTGTACTAGTTTTGGTGTTCCTAGGAACTCAAT
7751634 CTCATGCAACTCTATAAAGGTTTGCATAAAAGAACTGTGAC
131 CTCATGCAACTCTATAAAGGTTTGCATAAAAGAACTGTGAC
* **
7751675 AGAGTTGCCACTGTTACAGTAACAGTGCCCATGTGGGAGGGTGACACTGTTACCAGACCT-ACTT
1 AGAGTTGCCACTATTACAGTAACAGTGCCCATGTCAGAGGGTGACACTGTTACCAGACCTAACTT
** * *
7751739 TATTATATATGAATAACAACTT-GACAGCAAAAGTGCTGTGCTAGTTTTGGTGTTCCTAGGAACT
66 TAGCATATATGAAT---AA-TTGGACAGCAAAAGTACTGTACTAGTTTTGGTGTTCCTAGGAACT
7751803 CAATCTCATGCAACTCTATAAAGGTTTGCATAAA
127 CAATCTCATGCAACTCTATAAAGGTTTGCATAAA
7751837 TAACATCGAT
Statistics
Matches: 147, Mismatches: 11, Indels: 6
0.90 0.07 0.04
Matches are distributed among these distances:
170 16 0.11
171 55 0.37
173 74 0.50
174 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (171 bp):
AGAGTTGCCACTATTACAGTAACAGTGCCCATGTCAGAGGGTGACACTGTTACCAGACCTAACTT
TAGCATATATGAATAATTGGACAGCAAAAGTACTGTACTAGTTTTGGTGTTCCTAGGAACTCAAT
CTCATGCAACTCTATAAAGGTTTGCATAAAAGAACTGTGAC
Found at i:7753442 original size:22 final size:22
Alignment explanation
Indices: 7753417--7753460 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7753407 TGTATATTTA
*
7753417 TATTTACATCTCTAGAATTAAG
1 TATTTACATCCCTAGAATTAAG
**
7753439 TATTTGTATCCCTAGAATTAAG
1 TATTTACATCCCTAGAATTAAG
7753461 GACAAAAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.41
Consensus pattern (22 bp):
TATTTACATCCCTAGAATTAAG
Found at i:7753652 original size:24 final size:24
Alignment explanation
Indices: 7753603--7753652 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
7753593 AATATACATT
7753603 CAGTTTTACTCTTAGTTTTTCACA
1 CAGTTTTACTCTTAGTTTTTCACA
*
7753627 CAGTTTTATTTCTTAGTTTTTC-CA
1 CAGTTTTA-CTCTTAGTTTTTCACA
7753651 CA
1 CA
7753653 TGGTATCAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 12 0.50
25 12 0.50
ACGTcount: A:0.20, C:0.20, G:0.08, T:0.52
Consensus pattern (24 bp):
CAGTTTTACTCTTAGTTTTTCACA
Found at i:7753751 original size:25 final size:25
Alignment explanation
Indices: 7753717--7753779 Score: 90
Period size: 25 Copynumber: 2.5 Consensus size: 25
7753707 TGACTTCTAT
7753717 TTTAGGCCTTCATTGCCGAACCCTA
1 TTTAGGCCTTCATTGCCGAACCCTA
* *
7753742 TTTAGGCCTTCATTGTCGAACCCTG
1 TTTAGGCCTTCATTGCCGAACCCTA
* *
7753767 TTAAGACCTTCAT
1 TTTAGGCCTTCAT
7753780 AGCCATTTTC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.35
Consensus pattern (25 bp):
TTTAGGCCTTCATTGCCGAACCCTA
Found at i:7755514 original size:63 final size:63
Alignment explanation
Indices: 7755439--7755568 Score: 206
Period size: 63 Copynumber: 2.1 Consensus size: 63
7755429 CTTCTTCAAC
* * *
7755439 ATTTTCACCCATTAATTCTTCTGAGTCGAAACCCATTTTTGCTGAACCCAAGTCAAACACTGA
1 ATTTTCACCCATTAATTCTTCTGAGTCGAAACACATTTCTACTGAACCCAAGTCAAACACTGA
* * *
7755502 ATTTTCACCCATTAATTCTTTTGAGTCGAAACACGTTTCTACTGAGCCCAAGTCAAACACTGA
1 ATTTTCACCCATTAATTCTTCTGAGTCGAAACACATTTCTACTGAACCCAAGTCAAACACTGA
7755565 ATTT
1 ATTT
7755569 AAGTTTGAAC
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (63 bp):
ATTTTCACCCATTAATTCTTCTGAGTCGAAACACATTTCTACTGAACCCAAGTCAAACACTGA
Found at i:7757543 original size:22 final size:22
Alignment explanation
Indices: 7757517--7757560 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
7757507 TGTATATTTA
*
7757517 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
7757539 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
7757561 GACAAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:7757744 original size:25 final size:25
Alignment explanation
Indices: 7757703--7757754 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
7757693 AATATACATT
7757703 CAGTTTTACTCTTAGTTTTT-CACA
1 CAGTTTTACTCTTAGTTTTTCCACA
*
7757727 CAGTTTTATTTCTTAGTTTTTCCACA
1 CAGTTTTA-CTCTTAGTTTTTCCACA
7757753 CA
1 CA
7757755 TACTTCAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 8 0.32
25 11 0.44
26 6 0.24
ACGTcount: A:0.21, C:0.21, G:0.08, T:0.50
Consensus pattern (25 bp):
CAGTTTTACTCTTAGTTTTTCCACA
Found at i:7763295 original size:19 final size:19
Alignment explanation
Indices: 7763271--7763307 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
7763261 TCATAAAAGC
7763271 TATTAACTGATTAAACTGT
1 TATTAACTGATTAAACTGT
7763290 TATTAACTGATTAAACTG
1 TATTAACTGATTAAACTG
7763308 CATTTCAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.41
Consensus pattern (19 bp):
TATTAACTGATTAAACTGT
Found at i:7769426 original size:15 final size:16
Alignment explanation
Indices: 7769394--7769429 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
7769384 ATTTTTTAAA
*
7769394 ATATTATAATTATTTT
1 ATATTATAAATATTTT
7769410 ATATTATAAAT-TTTT
1 ATATTATAAATATTTT
7769425 ATATT
1 ATATT
7769430 TTTAATTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
ATATTATAAATATTTT
Found at i:7771580 original size:14 final size:14
Alignment explanation
Indices: 7771557--7771603 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
7771547 CTTCATTTGT
7771557 TTTATAAAAAATGA
1 TTTATAAAAAATGA
*
7771571 CTTT-TAAAAAATTA
1 -TTTATAAAAAATGA
7771585 TTTATAAAAAATG-
1 TTTATAAAAAATGA
7771598 TTTATA
1 TTTATA
7771604 TATTTTGAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
13 9 0.31
14 17 0.59
15 3 0.10
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.43
Consensus pattern (14 bp):
TTTATAAAAAATGA
Found at i:7771785 original size:25 final size:25
Alignment explanation
Indices: 7771716--7771786 Score: 79
Period size: 26 Copynumber: 2.8 Consensus size: 25
7771706 TTAATAAAAC
*
7771716 TATTAAAATATTAAAAATTATTTAT
1 TATTAAAATATTAAAATTTATTTAT
* * *
7771741 TATCAAAATATGTCACATTTATTTAT
1 TATTAAAATAT-TAAAATTTATTTAT
* *
7771767 TATTAAATTATTAATATTTA
1 TATTAAAATATTAAAATTTA
7771787 AAACTAATTA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
25 17 0.46
26 20 0.54
ACGTcount: A:0.45, C:0.04, G:0.01, T:0.49
Consensus pattern (25 bp):
TATTAAAATATTAAAATTTATTTAT
Found at i:7780338 original size:2 final size:2
Alignment explanation
Indices: 7780331--7780357 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7780321 GGTAAAAACA
7780331 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7780358 ACTTCTTTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7783217 original size:3 final size:3
Alignment explanation
Indices: 7783209--7783240 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
7783199 ATGGACCATT
7783209 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
7783241 GTCACTTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:7786014 original size:240 final size:240
Alignment explanation
Indices: 7785619--7786089 Score: 673
Period size: 238 Copynumber: 2.0 Consensus size: 240
7785609 GACTACATTT
* * * **
7785619 GGATATTAAATTTATATACAGATTGGATTTCGGATTAAAGAATGAAAAACTAAAAATTAAATCGT
1 GGATATTAAATGTATATACAGATTAGATTTCGGATTAAAGAATGAAAAACTAAAAACTAAATCAA
*
7785684 ATTATATATTTTTATTAGTTTTATATATATTTTAAATTTTATAAAATAAAAATAATTATTTTGTA
66 ATTATATATTTTTATTAGTTTTATATATATTTTAAATTTTATAAAATAAAAATAATTATTTTATA
*
7785749 TCTAAATCTATTTAAATATAT-AAAAATTTATATTAAAATAATATAT-AAAA-AATAAAAAAATT
131 TCTAAATCTATTTAAATATATAAAAAATTTATATTAAAATAATATATAAAAACAAAAAAAAAATT
* * *
7785811 CAAAAATCGATTAATTGAACCAGTAAATTTCAATTGGACTAAGTTA
196 -AAAAACCGATTAACTGAACCAATAAATTTCAATTGGACTAAGTTA
* ** * * *
7785857 GGATATTAAATGTATATACAGATTAGATTT-TGATTTGAGAAATGAAAAATTGAAAACTGAATCA
1 GGATATTAAATGTATATACAGATTAGATTTCGGATTAAAG-AATGAAAAACTAAAAACTAAATCA
*
7785921 AATTGA-ATATTTTTATTAGTTTTTATATATTTTTTAAAATTTTATAAAATAAAAATAATTATTT
65 AATT-ATATATTTTTATTAG-TTTTATATATATTTT-AAATTTTATAAAATAAAAATAATTATTT
*
7785985 TATATCTAAATTTATTTAAATATATAAAAAAATTTATATTAAAATAATATATAAAAACAAAAAAA
127 TATATCTAAATCTATTTAAATATAT-AAAAAATTTATATTAAAATAATATATAAAAACAAAAAAA
* *
7786050 AAATTAAAAACCTATTAACTGAATCAATAAATTTCAATTG
191 AAATTAAAAACCGATTAACTGAACCAATAAATTTCAATTG
7786090 AATTAGATCA
Statistics
Matches: 205, Mismatches: 20, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
237 6 0.03
238 63 0.31
239 15 0.07
240 51 0.25
242 25 0.12
243 34 0.17
244 11 0.05
ACGTcount: A:0.49, C:0.05, G:0.07, T:0.39
Consensus pattern (240 bp):
GGATATTAAATGTATATACAGATTAGATTTCGGATTAAAGAATGAAAAACTAAAAACTAAATCAA
ATTATATATTTTTATTAGTTTTATATATATTTTAAATTTTATAAAATAAAAATAATTATTTTATA
TCTAAATCTATTTAAATATATAAAAAATTTATATTAAAATAATATATAAAAACAAAAAAAAAATT
AAAAACCGATTAACTGAACCAATAAATTTCAATTGGACTAAGTTA
Found at i:7788241 original size:25 final size:25
Alignment explanation
Indices: 7788213--7788272 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
7788203 TTTATCATAT
7788213 TTAATATATATAATAATATAAATTA
1 TTAATATATATAATAATATAAATTA
* * *
7788238 TTAAAATATAAAATAATCTAAATTA
1 TTAATATATATAATAATATAAATTA
*
7788263 TAAAT-TATAT
1 TTAATATATAT
7788273 TTAAATATTA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
24 4 0.14
25 25 0.86
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (25 bp):
TTAATATATATAATAATATAAATTA
Found at i:7788308 original size:42 final size:42
Alignment explanation
Indices: 7788231--7788382 Score: 102
Period size: 41 Copynumber: 3.6 Consensus size: 42
7788221 TATAATAATA
* *
7788231 TAAATTATTAAAATATAAA-ATAATCTAAATT-ATAAATTATATT
1 TAAA-TATT-AAATATAAATATAATAT-ATTTAATAAATTATATT
*
7788274 TAAATATTAAATATAAATATAATATATTTAATAAA-TAT-GT
1 TAAATATTAAATATAAATATAATATATTTAATAAATTATATT
* * * *
7788314 TATATA-T-AATATAATACGATTAATATATATAATTAATT-TATT
1 TAAATATTAAATATAA-A-TA-TAATATATTTAATAAATTATATT
*
7788356 TAAATATAACATATATAAATATGAATA
1 TAAATATTA-A-ATATAAATAT-AATA
7788383 ATATAAATAT
Statistics
Matches: 86, Mismatches: 11, Indels: 23
0.72 0.09 0.19
Matches are distributed among these distances:
38 7 0.08
39 2 0.02
40 7 0.08
41 30 0.35
42 22 0.26
43 5 0.06
44 5 0.06
45 2 0.02
46 6 0.07
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (42 bp):
TAAATATTAAATATAAATATAATATATTTAATAAATTATATT
Found at i:7788326 original size:9 final size:9
Alignment explanation
Indices: 7788209--7788456 Score: 63
Period size: 9 Copynumber: 28.3 Consensus size: 9
7788199 ATTTTTTATC
*
7788209 ATATTTAAT
1 ATATATAAT
7788218 ATATATAAT
1 ATATATAAT
7788227 A-ATATAA-
1 ATATATAAT
*
7788234 AT-TATTAAA
1 ATATA-TAAT
*
7788243 ATATAAAAT
1 ATATATAAT
*
7788252 A-ATCTAA-
1 ATATATAAT
7788259 AT-TATAAATT
1 ATATAT-AA-T
*
7788269 ATATTTAA-
1 ATATATAAT
7788277 ATAT-TAAAT
1 ATATAT-AAT
7788286 ATAAATATAAT
1 AT--ATATAAT
*
7788297 ATATTTAAT
1 ATATATAAT
* **
7788306 AAATATGTT
1 ATATATAAT
7788315 ATATATAAT
1 ATATATAAT
7788324 ATA-ATACGAT
1 ATATATA--AT
7788334 -TA-AT-AT
1 ATATATAAT
7788340 ATATAATTAAT
1 ATAT-A-TAAT
* *
7788351 TTATTTAA-
1 ATATATAAT
7788359 ATATA-ACAT
1 ATATATA-AT
7788368 ATATA-AAT
1 ATATATAAT
7788376 ATGA-ATAAT
1 AT-ATATAAT
*
7788385 ATAAAT-AT
1 ATATATAAT
*
7788393 AAATA-AAT
1 ATATATAAT
*
7788401 AAATATAAT
1 ATATATAAT
7788410 -TAATATAAAT
1 AT-ATAT-AAT
*
7788420 ATATATCAT
1 ATATATAAT
7788429 -TATATAAT
1 ATATATAAT
7788437 -TAATATAA-
1 AT-ATATAAT
*
7788445 ATATATTAT
1 ATATATAAT
7788454 ATA
1 ATA
7788457 AATATAATTA
Statistics
Matches: 180, Mismatches: 25, Indels: 68
0.66 0.09 0.25
Matches are distributed among these distances:
6 2 0.01
7 10 0.06
8 59 0.33
9 77 0.43
10 16 0.09
11 15 0.08
12 1 0.01
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.42
Consensus pattern (9 bp):
ATATATAAT
Found at i:7788337 original size:32 final size:31
Alignment explanation
Indices: 7788284--7788343 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
7788274 TAAATATTAA
*
7788284 ATATAAATATAATATATTTAATAAATATGTT
1 ATATAAATATAATAGATTTAATAAATATGTT
*
7788315 ATATATAATATAATACGA-TTAATATATAT
1 ATATA-AATATAATA-GATTTAATAAATAT
7788344 AATTAATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
31 5 0.20
32 19 0.76
33 1 0.04
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (31 bp):
ATATAAATATAATAGATTTAATAAATATGTT
Found at i:7788376 original size:15 final size:15
Alignment explanation
Indices: 7788356--7788487 Score: 113
Period size: 15 Copynumber: 9.3 Consensus size: 15
7788346 TTAATTTATT
7788356 TAAATATAACAT-ATA
1 TAAATATAA-ATAATA
*
7788371 TAAATATGAATAATA
1 TAAATATAAATAATA
7788386 TAAATATAAATAA-A
1 TAAATATAAATAATA
*
7788400 TAAATATAATTAATA
1 TAAATATAAATAATA
* *
7788415 TAAATATATATCAT-
1 TAAATATAAATAATA
*
7788429 T--ATATAATTAATA
1 TAAATATAAATAATA
*
7788442 TAAATAT--ATTATA
1 TAAATATAAATAATA
*
7788455 TAAATATAATTAA-A
1 TAAATATAAATAATA
7788469 T-AA-ATAAATAATTA
1 TAAATATAAATAA-TA
7788483 TAAAT
1 TAAAT
7788488 TATTTATAAT
Statistics
Matches: 92, Mismatches: 14, Indels: 21
0.72 0.11 0.17
Matches are distributed among these distances:
12 15 0.16
13 14 0.15
14 20 0.22
15 43 0.47
ACGTcount: A:0.60, C:0.02, G:0.01, T:0.38
Consensus pattern (15 bp):
TAAATATAAATAATA
Found at i:7788382 original size:6 final size:6
Alignment explanation
Indices: 7788368--7788463 Score: 54
Period size: 6 Copynumber: 15.0 Consensus size: 6
7788358 AATATAACAT
7788368 ATATAA ATATGAATA ATATAA ATATAA ATAAATAA ATAT-A AT-T-A ATATAA
1 ATATAA ATAT--A-A ATATAA ATATAA AT--ATAA ATATAA ATATAA ATATAA
* * * *
7788418 ATATAT ATCATTAT ATAATTA ATATAA ATATATT ATATAA ATATAA
1 ATATAA AT-A-TAA AT-ATAA ATATAA ATATA-A ATATAA ATATAA
7788464 TTAAATAAAT
Statistics
Matches: 73, Mismatches: 7, Indels: 20
0.73 0.07 0.20
Matches are distributed among these distances:
4 4 0.05
5 4 0.05
6 37 0.51
7 10 0.14
8 13 0.18
9 5 0.07
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.39
Consensus pattern (6 bp):
ATATAA
Found at i:7788441 original size:27 final size:26
Alignment explanation
Indices: 7788219--7788489 Score: 122
Period size: 27 Copynumber: 10.4 Consensus size: 26
7788209 ATATTTAATA
*
7788219 TATATAA-TAATATAAAT-TAT-TAA
1 TATATAATTAATATAAATATATATAT
* * * *
7788242 AATATAAAATAATCTAAAT-TATAAAT
1 TATAT-AATTAATATAAATATATATAT
*
7788268 TATAT--TTAAATATTAAATATAAATAT
1 TATATAATT-AATA-TAAATATATATAT
* * *
7788294 AATATATTTAATA-AATATGTTATATAT
1 TATATAATTAATATAA-AT-ATATATAT
* ** *
7788321 AATATAA-TACGATTAATATATATAAT
1 TATATAATTAATATAAATATATAT-AT
* *
7788347 TAATTTATTTAAATATAACATATATA-A-
1 T-ATATAATT-AATATAA-ATATATATAT
*
7788374 -ATATGAA-TAATATAAATATAAATAAAT
1 TATAT-AATTAATATAAATAT--ATATAT
*
7788401 AAATATAATTAATATAAATATATATCAT
1 -TATATAATTAATATAAATATATAT-AT
7788429 TATATAATTAATATAAATATATTATAT
1 TATATAATTAATATAAATATA-TATAT
* *
7788456 AAATATAATTAA-ATAAATAAATA-AT
1 -TATATAATTAATATAAATATATATAT
7788481 TATA-AATTA
1 TATATAATTA
7788490 TTTATAATTT
Statistics
Matches: 191, Mismatches: 30, Indels: 54
0.69 0.11 0.20
Matches are distributed among these distances:
23 14 0.07
24 15 0.08
25 33 0.17
26 27 0.14
27 54 0.28
28 21 0.11
29 20 0.10
30 7 0.04
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.41
Consensus pattern (26 bp):
TATATAATTAATATAAATATATATAT
Found at i:7788525 original size:69 final size:71
Alignment explanation
Indices: 7788358--7788527 Score: 190
Period size: 69 Copynumber: 2.5 Consensus size: 71
7788348 AATTTATTTA
* * *
7788358 AATATAACATATATAAATATGAATAATATAAATATAAATAAATAAATATAATTAATATAAATATA
1 AATATAATAAATATAAATATTAATAATATAAATATAAATAAATAAATATAATTAATATAAATATA
7788423 TATCAT
66 TATCAT
* * * *
7788429 TATATAATTAATATAAATA-T-ATTATATAAATATAATTAAATAAATA-AA-TAATTATAAAT-T
1 AATATAATAAATATAAATATTAATAATATAAATATAAATAAATAAATATAATTAA-TATAAATAT
*
7788489 AT-TTAT
65 ATATCAT
* *
7788495 AATTTAATAAATTTAACATATTAATAATATAAA
1 AATATAATAAATATAA-ATATTAATAATATAAA
7788528 ACAATACTTA
Statistics
Matches: 82, Mismatches: 13, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
66 15 0.18
67 9 0.11
68 10 0.12
69 33 0.40
71 15 0.18
ACGTcount: A:0.58, C:0.02, G:0.01, T:0.39
Consensus pattern (71 bp):
AATATAATAAATATAAATATTAATAATATAAATATAAATAAATAAATATAATTAATATAAATATA
TATCAT
Found at i:7795556 original size:2 final size:2
Alignment explanation
Indices: 7795549--7795576 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7795539 CATCTCCATC
7795549 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7795577 GCTCGTATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7799214 original size:2 final size:2
Alignment explanation
Indices: 7799209--7799243 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
7799199 CATATATCCC
7799209 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7799244 GTACAACTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7799826 original size:32 final size:32
Alignment explanation
Indices: 7799790--7799864 Score: 80
Period size: 32 Copynumber: 2.3 Consensus size: 32
7799780 AATATTTTAT
*
7799790 ATAAAA-AATTAAATATTATCTTATTATAAGTA
1 ATAAAATAAATAAATATTATC-TATTATAAGTA
* * **
7799822 ATAAAATAAATACATTTTATCTATTATAAAAA
1 ATAAAATAAATAAATATTATCTATTATAAGTA
*
7799854 ATCAAATAAAT
1 ATAAAATAAAT
7799865 GAAGCTTATT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
32 25 0.69
33 11 0.31
ACGTcount: A:0.56, C:0.05, G:0.01, T:0.37
Consensus pattern (32 bp):
ATAAAATAAATAAATATTATCTATTATAAGTA
Found at i:7799973 original size:24 final size:23
Alignment explanation
Indices: 7799946--7799990 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
7799936 ACGATGAAAC
7799946 TCAAACCTAATTTTATTTTTTTGA
1 TCAAACCTAA-TTTATTTTTTTGA
* *
7799970 TCAAATCTTATTTATTTTTTT
1 TCAAACCTAATTTATTTTTTT
7799991 AAATTTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.27, C:0.11, G:0.02, T:0.60
Consensus pattern (23 bp):
TCAAACCTAATTTATTTTTTTGA
Found at i:7800788 original size:8 final size:8
Alignment explanation
Indices: 7800759--7800814 Score: 51
Period size: 8 Copynumber: 6.6 Consensus size: 8
7800749 TGACATAAAA
7800759 AATTTAAT
1 AATTTAAT
7800767 AATTTCAAT
1 AATTT-AAT
*
7800776 TATTTAAT
1 AATTTAAT
*
7800784 AATTTTAT
1 AATTTAAT
7800792 AAATATTAAAT
1 -AAT-TT-AAT
7800803 AATTTAA-
1 AATTTAAT
7800810 AATTT
1 AATTT
7800815 TTATTACATA
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
7 5 0.12
8 16 0.40
9 12 0.30
10 5 0.12
11 2 0.05
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (8 bp):
AATTTAAT
Found at i:7802742 original size:2 final size:2
Alignment explanation
Indices: 7802737--7802765 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7802727 ATATATATAT
7802737 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
7802766 TTGTAAGCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7803747 original size:29 final size:30
Alignment explanation
Indices: 7803715--7803772 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
7803705 AATACTTTTT
* *
7803715 GTTAATAAATAAT-TAAAATTTATTTATTA
1 GTTAATAAATAATAAAAAATTTATGTATTA
* *
7803744 GTTATTATATAATAAAAAATTTATGTATT
1 GTTAATAAATAATAAAAAATTTATGTATT
7803773 TATTACATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 11 0.46
30 13 0.54
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.48
Consensus pattern (30 bp):
GTTAATAAATAATAAAAAATTTATGTATTA
Found at i:7803782 original size:27 final size:26
Alignment explanation
Indices: 7803736--7803787 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
7803726 ATTAAAATTT
*
7803736 ATTTATTAGTTATTATATAATAAAAA
1 ATTTATTAGTTATTACATAATAAAAA
*
7803762 ATTTATGTATTTATTACATAATAAAA
1 ATTTAT-TAGTTATTACATAATAAAA
7803788 TTTATTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 6 0.26
27 17 0.74
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (26 bp):
ATTTATTAGTTATTACATAATAAAAA
Found at i:7803801 original size:25 final size:24
Alignment explanation
Indices: 7803748--7803820 Score: 71
Period size: 26 Copynumber: 3.0 Consensus size: 24
7803738 TTATTAGTTA
*
7803748 TTATA-TAATAA-AAAATTTATGTA
1 TTATATTAATAATAAAATTTAT-TT
7803771 TT-TATTACATAATAAAATTTATTT
1 TTATATTA-ATAATAAAATTTATTT
*
7803795 TTATATTAAATTAATAAAATTAATTT
1 TTATATT-AA-TAATAAAATTTATTT
7803821 ATAATTTTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
22 2 0.05
23 4 0.10
24 7 0.17
25 14 0.33
26 15 0.36
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (24 bp):
TTATATTAATAATAAAATTTATTT
Found at i:7803809 original size:26 final size:25
Alignment explanation
Indices: 7803720--7803820 Score: 87
Period size: 25 Copynumber: 3.8 Consensus size: 25
7803710 TTTTTGTTAA
7803720 TAAATAATTAAAATTTATTTATTAGTTAT
1 TAAATAA-TAAAATTTATTT-TTA--TAT
* *
7803749 TATATAATAAAAAATTTATGTATT-TAT
1 TAAATAAT--AAAATTTAT-TTTTATAT
*
7803776 TACATAATAAAATTTATTTTTATAT
1 TAAATAATAAAATTTATTTTTATAT
*
7803801 TAAATTAATAAAATTAATTT
1 TAAA-TAATAAAATTTATTT
7803821 ATAATTTTTA
Statistics
Matches: 61, Mismatches: 6, Indels: 13
0.76 0.08 0.16
Matches are distributed among these distances:
24 3 0.05
25 15 0.25
26 14 0.23
27 10 0.16
28 1 0.02
29 6 0.10
30 11 0.18
31 1 0.02
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.50
Consensus pattern (25 bp):
TAAATAATAAAATTTATTTTTATAT
Found at i:7806227 original size:87 final size:86
Alignment explanation
Indices: 7806126--7806562 Score: 420
Period size: 87 Copynumber: 5.0 Consensus size: 86
7806116 AACTTAAAAA
* *
7806126 CTCCTCTAAACAGAGGCTCAACAACTTTGAAAAATAAATAAGGTTCCTCTAAATAAAGGCTTAAC
1 CTCCTCTAAACAGAGGCTCAACAACTTTGAAAAATAAATAAGGTTCCTCTAAGTAAAGGCTCAAC
7806191 AACTTTGAAAAAATAAATAAGG
66 AACTTTG-AAAAATAAATAAGG
* ** * **
7806213 CTCTTCTAAACAGAGGCTCAATGACTTTGAAAAATAAATAAAGCTT-CTCTAAGTAAATACTCAA
1 CTCCTCTAAACAGAGGCTCAACAACTTTGAAAAATAAAT-AAGGTTCCTCTAAGTAAAGGCTCAA
*
7806277 CAATTTTGAAAAATAAATAAGG
65 CAACTTTGAAAAATAAATAAGG
* * * * * * * * **
7806299 CTCATCTTAGCAAAGACTCAATAATTTTTGAAAAATAAATAAGGCTCC-CATAAGTAGGGGCTCA
1 CTCCTCTAAACAGAGGCTCAACAA-CTTTGAAAAATAAATAAGGTTCCTC-TAAGTAAAGGCTCA
*
7806363 ACAACTTTGAAAAATAAATAAAG
64 ACAACTTTGAAAAATAAATAAGG
** * * * * * *
7806386 CTCCTCTAAGTAGAAGCTCAACAACTTT-AAAAATTAAATAAAGCTT-CTCTAAATAGAGACTTA
1 CTCCTCTAAACAGAGGCTCAACAACTTTGAAAAA-TAAAT-AAGGTTCCTCTAAGTAAAGGCTCA
*
7806449 ACAACTTTGAAAAATAAATGAA-A
64 ACAACTTTGAAAAATAAAT-AAGG
* * * *
7806472 CTCCTATAAACAGAGGCTCAATCAACTTTTGAAAAATAAATAA-GTCTCATTTAAGCAGAA-GCT
1 CTCCTCTAAACAGAGGCTCAA-CAAC-TTTGAAAAATAAATAAGGT-TCCTCTAAGTA-AAGGCT
*
7806535 CAACAACTTTGAAAAATAAATAGGG
62 CAACAACTTTGAAAAATAAATAAGG
7806560 CTC
1 CTC
7806563 ATCGACAATC
Statistics
Matches: 282, Mismatches: 53, Indels: 29
0.77 0.15 0.08
Matches are distributed among these distances:
85 5 0.02
86 93 0.33
87 135 0.48
88 43 0.15
89 6 0.02
ACGTcount: A:0.45, C:0.17, G:0.12, T:0.26
Consensus pattern (86 bp):
CTCCTCTAAACAGAGGCTCAACAACTTTGAAAAATAAATAAGGTTCCTCTAAGTAAAGGCTCAAC
AACTTTGAAAAATAAATAAGG
Found at i:7806297 original size:130 final size:128
Alignment explanation
Indices: 7806141--7806556 Score: 457
Period size: 130 Copynumber: 3.2 Consensus size: 128
7806131 CTAAACAGAG
*
7806141 GCTCAACAACTTTGAAAAATAAATAAGGTTCCTCTAAATAAAGGCTTAACAACTTTGAAAAAATA
1 GCTCAACAACTTTGAAAAATAAATAAGGTTCCTCTAAATAAAGACTTAACAACTTTG-AAAAATA
*
7806206 AATAAGGCTCTTCTAAACAGAGGCTCAATGACTTTGAAAAATAAATAAAGCTTCTCTAAGTA-AA
65 AATAAGGCTC-TCTAAACAGAGGCTCAATAACTTTGAAAAATAAATAAAGCTTCTCTAAGTAGAA
* * * * * ** * * *
7806270 TACTCAACAATTTTGAAAAATAAATAAGGCTCATCTTAGCAAAGACTCAATAATTTTTGAAAAAT
1 -GCTCAACAACTTTGAAAAATAAATAAGGTTCCTCTAAATAAAGACTTAACAA-CTTTGAAAAAT
* ** * * *
7806335 AAATAAGGCTCCCATAAGTAGGGGCTCAACAACTTTGAAAAATAAATAAAGCTCCTCTAAGTAGA
64 AAATAAGGCTCTC-TAAACAGAGGCTCAATAACTTTGAAAAATAAATAAAGCTTCTCTAAGTAGA
7806400 A
128 A
* *
7806401 GCTCAACAACTTT-AAAAATTAAATAAAGCTT-CTCTAAATAGAGACTTAACAACTTTGAAAAAT
1 GCTCAACAACTTTGAAAAA-TAAAT-AAGGTTCCTCTAAATAAAGACTTAACAACTTTGAAAAAT
* * *
7806464 AAATGAA-ACTCCTATAAACAGAGGCTCAATCAACTTTTGAAAAATAAAT-AAG-TCTCATTTAA
64 AAAT-AAGGCT-CTCTAAACAGAGGCTCAAT-AAC-TTTGAAAAATAAATAAAGCT-TC-TCTAA
*
7806526 GCAGAA
123 GTAGAA
7806532 GCTCAACAACTTTGAAAAATAAATA
1 GCTCAACAACTTTGAAAAATAAATA
7806557 GGGCTCATCG
Statistics
Matches: 234, Mismatches: 40, Indels: 24
0.79 0.13 0.08
Matches are distributed among these distances:
129 35 0.15
130 143 0.61
131 51 0.22
132 5 0.02
ACGTcount: A:0.46, C:0.16, G:0.12, T:0.26
Consensus pattern (128 bp):
GCTCAACAACTTTGAAAAATAAATAAGGTTCCTCTAAATAAAGACTTAACAACTTTGAAAAATAA
ATAAGGCTCTCTAAACAGAGGCTCAATAACTTTGAAAAATAAATAAAGCTTCTCTAAGTAGAA
Found at i:7806564 original size:43 final size:43
Alignment explanation
Indices: 7806126--7806562 Score: 384
Period size: 43 Copynumber: 10.1 Consensus size: 43
7806116 AACTTAAAAA
* *
7806126 CTCCTCTAAACAGAGGCTCAACAACTTTGAAAAATAAATAAGG
1 CTCCTCTAAGCAGAAGCTCAACAACTTTGAAAAATAAATAAGG
* ** *
7806169 TTCCTCTAAATA-AAGGCTTAACAACTTTGAAAAAATAAATAAGG
1 CTCCTCTAAGCAGAA-GCTCAACAACTTTG-AAAAATAAATAAGG
* * * ** *
7806213 CTCTTCTAAACAGAGGCTCAATGACTTTGAAAAATAAATAAAG
1 CTCCTCTAAGCAGAAGCTCAACAACTTTGAAAAATAAATAAGG
* * * *
7806256 CTTCTCTAAGTA-AATACTCAACAATTTTGAAAAATAAATAAGG
1 CTCCTCTAAGCAGAA-GCTCAACAACTTTGAAAAATAAATAAGG
* * * *
7806299 CTCATCTTAGCA-AAGACTCAATAATTTTTGAAAAATAAATAAGG
1 CTCCTCTAAGCAGAAG-CTCAACAA-CTTTGAAAAATAAATAAGG
* ** *
7806343 CTCC-CATAAGTAGGGGCTCAACAACTTTGAAAAATAAATAAAG
1 CTCCTC-TAAGCAGAAGCTCAACAACTTTGAAAAATAAATAAGG
* *
7806386 CTCCTCTAAGTAGAAGCTCAACAACTTT-AAAAATTAAATAAAG
1 CTCCTCTAAGCAGAAGCTCAACAACTTTGAAAAA-TAAATAAGG
* ** * *
7806429 CTTCTCTAAATAG-AGACTTAACAACTTTGAAAAATAAATGAA-A
1 CTCCTCTAAGCAGAAG-CTCAACAACTTTGAAAAATAAAT-AAGG
* * * *
7806472 CTCCTATAAACAGAGGCTCAATCAACTTTTGAAAAATAAATAAGT
1 CTCCTCTAAGCAGAAGCTCAA-CAAC-TTTGAAAAATAAATAAGG
* * *
7806517 CTCATTTAAGCAGAAGCTCAACAACTTTGAAAAATAAATAGGG
1 CTCCTCTAAGCAGAAGCTCAACAACTTTGAAAAATAAATAAGG
7806560 CTC
1 CTC
7806563 ATCGACAATC
Statistics
Matches: 323, Mismatches: 54, Indels: 34
0.79 0.13 0.08
Matches are distributed among these distances:
42 9 0.03
43 195 0.60
44 86 0.27
45 33 0.10
ACGTcount: A:0.45, C:0.17, G:0.12, T:0.26
Consensus pattern (43 bp):
CTCCTCTAAGCAGAAGCTCAACAACTTTGAAAAATAAATAAGG
Found at i:7807013 original size:23 final size:23
Alignment explanation
Indices: 7806987--7807056 Score: 61
Period size: 23 Copynumber: 3.1 Consensus size: 23
7806977 TTTCACATCT
*
7806987 AAATTCAAAGGTTCTCATTTAAA
1 AAATTCAAAGGTTCTCATTCAAA
* * * *
7807010 AAATTTAGAGGTTCACA-TCCAA
1 AAATTCAAAGGTTCTCATTCAAA
* * *
7807032 AATTTCAAAGCTTCTCATTCGAA
1 AAATTCAAAGGTTCTCATTCAAA
7807055 AA
1 AA
7807057 CTTTTGGCGA
Statistics
Matches: 35, Mismatches: 11, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
22 15 0.43
23 20 0.57
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.31
Consensus pattern (23 bp):
AAATTCAAAGGTTCTCATTCAAA
Found at i:7807179 original size:14 final size:14
Alignment explanation
Indices: 7807162--7807188 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7807152 ACAAAAATTC
7807162 TTATTCAAAGATTT
1 TTATTCAAAGATTT
7807176 TTATTCAAAGATT
1 TTATTCAAAGATT
7807189 CTCATTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.48
Consensus pattern (14 bp):
TTATTCAAAGATTT
Found at i:7808523 original size:7 final size:7
Alignment explanation
Indices: 7808486--7808614 Score: 122
Period size: 7 Copynumber: 18.1 Consensus size: 7
7808476 TCATTTTCTC
7808486 TCATTTT
1 TCATTTT
7808493 TACATTTTT
1 T-CA-TTTT
7808502 TACATTTT
1 T-CATTTT
7808510 TCA-TTT
1 TCATTTT
7808516 TCATTTT
1 TCATTTT
*
7808523 TTATTTT
1 TCATTTT
*
7808530 TTATTTT
1 TCATTTT
*
7808537 TTATTTT
1 TCATTTT
*
7808544 TTATTTTT
1 TCA-TTTT
7808552 TCACTTTT
1 TCA-TTTT
7808560 TCACTTTT
1 TCA-TTTT
7808568 TCATTTT
1 TCATTTT
7808575 TCA-TTT
1 TCATTTT
*
7808581 T--TTCT
1 TCATTTT
7808586 TCATTTT
1 TCATTTT
7808593 TCATTTT
1 TCATTTT
7808600 TCATTTT
1 TCATTTT
*
7808607 TTATTTT
1 TCATTTT
7808614 T
1 T
7808615 TATCCATTAT
Statistics
Matches: 109, Mismatches: 6, Indels: 14
0.84 0.05 0.11
Matches are distributed among these distances:
5 3 0.03
6 10 0.09
7 60 0.55
8 28 0.26
9 8 0.07
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.74
Consensus pattern (7 bp):
TCATTTT
Found at i:7815620 original size:16 final size:16
Alignment explanation
Indices: 7815601--7815631 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7815591 TTTAAAAATA
7815601 AAATAAATAAATAAAC
1 AAATAAATAAATAAAC
*
7815617 AAATACATAAATAAA
1 AAATAAATAAATAAA
7815632 ATAAAAATGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.19
Consensus pattern (16 bp):
AAATAAATAAATAAAC
Found at i:7824216 original size:21 final size:21
Alignment explanation
Indices: 7824190--7824239 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
7824180 GATGGAATTG
* *
7824190 AAATTAATTATTGTAGTAATA
1 AAATTAAATATCGTAGTAATA
* *
7824211 AAATTAAATATCGTAGTAGTG
1 AAATTAAATATCGTAGTAATA
7824232 AAATTAAA
1 AAATTAAA
7824240 ATAAGTGATG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.50, C:0.02, G:0.12, T:0.36
Consensus pattern (21 bp):
AAATTAAATATCGTAGTAATA
Found at i:7827953 original size:2 final size:2
Alignment explanation
Indices: 7827946--7828005 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
7827936 TATAAATAGG
7827946 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
7827988 CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT
7828006 TACAAGCGAC
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:7829481 original size:35 final size:35
Alignment explanation
Indices: 7829441--7829538 Score: 160
Period size: 35 Copynumber: 2.8 Consensus size: 35
7829431 CGCCCCTAAC
7829441 CAGCCACCCTACAATCCACCTATAGCCTACCCCTA
1 CAGCCACCCTACAATCCACCTATAGCCTACCCCTA
7829476 CAGCCACCCTACAATCCACCTATAGCCTACCCCTA
1 CAGCCACCCTACAATCCACCTATAGCCTACCCCTA
** * *
7829511 CAGCCACCCTGTAGTCCACCTACAGCCT
1 CAGCCACCCTACAATCCACCTATAGCCT
7829539 TGCAGTCCAC
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 59 1.00
ACGTcount: A:0.27, C:0.48, G:0.08, T:0.17
Consensus pattern (35 bp):
CAGCCACCCTACAATCCACCTATAGCCTACCCCTA
Found at i:7829487 original size:11 final size:11
Alignment explanation
Indices: 7829441--7829520 Score: 56
Period size: 11 Copynumber: 6.9 Consensus size: 11
7829431 CGCCCCTAAC
7829441 CAGCCACCCTA
1 CAGCCACCCTA
*
7829452 CAATCCA-CCTA
1 C-AGCCACCCTA
*
7829463 TAGCCTACCCCTA
1 CAGCC-A-CCCTA
7829476 CAGCCACCCTA
1 CAGCCACCCTA
*
7829487 CAATCCA-CCTA
1 C-AGCCACCCTA
*
7829498 TAGCCTACCCCTA
1 CAGCC-A-CCCTA
7829511 CAGCCACCCT
1 CAGCCACCCT
7829521 GTAGTCCACC
Statistics
Matches: 53, Mismatches: 8, Indels: 16
0.69 0.10 0.21
Matches are distributed among these distances:
10 6 0.11
11 21 0.40
12 10 0.19
13 16 0.30
ACGTcount: A:0.28, C:0.50, G:0.06, T:0.16
Consensus pattern (11 bp):
CAGCCACCCTA
Found at i:7830432 original size:12 final size:13
Alignment explanation
Indices: 7830412--7830450 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
7830402 TACACCAACC
7830412 ACAAAAAAATCAA
1 ACAAAAAAATCAA
7830425 ACAAAAAAATCAA
1 ACAAAAAAATCAA
*
7830438 ACAGAAAAA-CAA
1 ACAAAAAAATCAA
7830450 A
1 A
7830451 AACAAAAAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
12 4 0.16
13 21 0.84
ACGTcount: A:0.77, C:0.15, G:0.03, T:0.05
Consensus pattern (13 bp):
ACAAAAAAATCAA
Found at i:7830456 original size:18 final size:19
Alignment explanation
Indices: 7830429--7830466 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
7830419 AATCAAACAA
*
7830429 AAAAATCAAACAGAAAAAC
1 AAAAATCAAAAAGAAAAAC
*
7830448 AAAAA-CAAAAAGACAAAC
1 AAAAATCAAAAAGAAAAAC
7830466 A
1 A
7830467 CAGTCTTTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.76, C:0.16, G:0.05, T:0.03
Consensus pattern (19 bp):
AAAAATCAAAAAGAAAAAC
Found at i:7830890 original size:28 final size:28
Alignment explanation
Indices: 7830849--7830904 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
7830839 AATATAGGAG
** **
7830849 CAAAACGACGTCGTTTTGAGCATAAGAT
1 CAAAACGAAATCGTTTCAAGCATAAGAT
7830877 CAAAACGAAATCGTTTCAAGCATAAGAT
1 CAAAACGAAATCGTTTCAAGCATAAGAT
7830905 GATCCGCGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.23
Consensus pattern (28 bp):
CAAAACGAAATCGTTTCAAGCATAAGAT
Found at i:7831578 original size:15 final size:15
Alignment explanation
Indices: 7831558--7831673 Score: 94
Period size: 15 Copynumber: 7.9 Consensus size: 15
7831548 ACTCATTCTT
7831558 AAATCCAAACCCCTA
1 AAATCCAAACCCCTA
* * *
7831573 AAATCCAAACTCTTT
1 AAATCCAAACCCCTA
*
7831588 AAATCCAAAACCCTA
1 AAATCCAAACCCCTA
* * *
7831603 AAATCCTAA-CCTTT
1 AAATCCAAACCCCTA
7831617 AAATCCAAACCCC-A
1 AAATCCAAACCCCTA
* **
7831631 AAATTCAAAACCTTTA
1 AAA-TCCAAACCCCTA
*
7831647 AAATCCAAA-CCCTT
1 AAATCCAAACCCCTA
*
7831661 AAATCAAAACCCC
1 AAATCCAAACCCC
7831674 AAACCTCAAA
Statistics
Matches: 76, Mismatches: 21, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
14 24 0.32
15 48 0.63
16 4 0.05
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.21
Consensus pattern (15 bp):
AAATCCAAACCCCTA
Found at i:7831590 original size:30 final size:29
Alignment explanation
Indices: 7831556--7831671 Score: 146
Period size: 30 Copynumber: 4.0 Consensus size: 29
7831546 ACACTCATTC
7831556 TTAAATCCAAACCCCTAAAATCCAAACTCT
1 TTAAATCCAAACCCCTAAAATCCAAAC-CT
* *
7831586 TTAAATCCAAAACCCTAAAATCCTAACCT
1 TTAAATCCAAACCCCTAAAATCCAAACCT
*
7831615 TTAAATCCAAACCCC-AAAATTCAAAACCT
1 TTAAATCCAAACCCCTAAAA-TCCAAACCT
* *
7831644 TTAAAATCCAAA-CCCTTAAATCAAAACC
1 TT-AAATCCAAACCCCTAAAATCCAAACC
7831672 CCAAACCTCA
Statistics
Matches: 77, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
28 4 0.05
29 36 0.47
30 37 0.48
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.22
Consensus pattern (29 bp):
TTAAATCCAAACCCCTAAAATCCAAACCT
Found at i:7831621 original size:44 final size:44
Alignment explanation
Indices: 7831558--7831676 Score: 132
Period size: 44 Copynumber: 2.7 Consensus size: 44
7831548 ACTCATTCTT
* ***
7831558 AAATCCAAACCCCTAAAATCCAAACTCTTTAAATCCAAAACC-CTA
1 AAATCCAAA-CCCTTAAATCCAAAC-CCCAAAATCCAAAACCTCTA
* * * *
7831603 AAATCCTAACCTTTAAATCCAAACCCCAAAATTCAAAACCTTTA
1 AAATCCAAACCCTTAAATCCAAACCCCAAAATCCAAAACCTCTA
*
7831647 AAATCCAAACCCTTAAATCAAAACCCCAAA
1 AAATCCAAACCCTTAAATCCAAACCCCAAA
7831677 CCTCAAATGT
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
43 12 0.19
44 42 0.68
45 8 0.13
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.20
Consensus pattern (44 bp):
AAATCCAAACCCTTAAATCCAAACCCCAAAATCCAAAACCTCTA
Found at i:7831839 original size:29 final size:29
Alignment explanation
Indices: 7831800--7831891 Score: 89
Period size: 29 Copynumber: 3.2 Consensus size: 29
7831790 TAAATTTCTT
*
7831800 AAACCCTAAAATTAAACCTTAAACC-TCC
1 AAACCTTAAAATTAAACCTTAAACCTTCC
* * * *
7831828 TAACCTTAAAAATGAAACCCTAGACCTTCC
1 AAACCTT-AAAATTAAACCTTAAACCTTCC
* *
7831858 AAACCTTAAAATTAAAACCTT-CACCTTCT
1 AAACCTTAAAATT-AAACCTTAAACCTTCC
7831887 AAACC
1 AAACC
7831892 CTACAATCAA
Statistics
Matches: 51, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
28 5 0.10
29 31 0.61
30 15 0.29
ACGTcount: A:0.43, C:0.30, G:0.02, T:0.24
Consensus pattern (29 bp):
AAACCTTAAAATTAAACCTTAAACCTTCC
Found at i:7832005 original size:14 final size:14
Alignment explanation
Indices: 7831974--7832039 Score: 53
Period size: 14 Copynumber: 4.7 Consensus size: 14
7831964 TAAATCCTTT
* * *
7831974 AAACCCTAAAACTA
1 AAACCTTAAATCTC
*
7831988 AAACTTTAAATCTC
1 AAACCTTAAATCTC
* *
7832002 AAACCCTAAAATC-A
1 AAA-CCTTAAATCTC
7832016 AAACCTTAAATCTC
1 AAACCTTAAATCTC
*
7832030 AAACCCTAAA
1 AAACCTTAAA
7832040 ATAAGAAACA
Statistics
Matches: 40, Mismatches: 10, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
13 8 0.20
14 25 0.62
15 7 0.17
ACGTcount: A:0.52, C:0.27, G:0.00, T:0.21
Consensus pattern (14 bp):
AAACCTTAAATCTC
Found at i:7832018 original size:28 final size:28
Alignment explanation
Indices: 7831921--7832041 Score: 120
Period size: 28 Copynumber: 4.2 Consensus size: 28
7831911 ACTCCAAGTT
** *
7831921 CTAAAATCAAAACTCCAAACTTTCAAACC
1 CTAAAATCAAAACTTTAAA-TCTCAAACC
* * * *
7831950 CTAAAATTAAATC-ATAAATCCTTTAAACC
1 CTAAAATCAAAACTTTAAAT-C-TCAAACC
7831979 CTAAAA-CTAAAACTTTAAATCTCAAACC
1 CTAAAATC-AAAACTTTAAATCTCAAACC
*
7832007 CTAAAATCAAAACCTTAAATCTCAAACC
1 CTAAAATCAAAACTTTAAATCTCAAACC
7832035 CTAAAAT
1 CTAAAAT
7832042 AAGAAACATA
Statistics
Matches: 76, Mismatches: 11, Indels: 11
0.78 0.11 0.11
Matches are distributed among these distances:
27 1 0.01
28 41 0.54
29 29 0.38
30 5 0.07
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.25
Consensus pattern (28 bp):
CTAAAATCAAAACTTTAAATCTCAAACC
Found at i:7832041 original size:15 final size:15
Alignment explanation
Indices: 7831974--7832041 Score: 63
Period size: 15 Copynumber: 4.8 Consensus size: 15
7831964 TAAATCCTTT
7831974 AAACCCTAAAA-CT-
1 AAACCCTAAAATCTC
* * *
7831987 AAAACTTTAAATCTC
1 AAACCCTAAAATCTC
7832002 AAACCCTAAAA--TC
1 AAACCCTAAAATCTC
* *
7832015 AAAACCTTAAATCTC
1 AAACCCTAAAATCTC
7832030 AAACCCTAAAAT
1 AAACCCTAAAAT
7832042 AAGAAACATA
Statistics
Matches: 41, Mismatches: 10, Indels: 6
0.72 0.18 0.11
Matches are distributed among these distances:
13 19 0.46
14 2 0.05
15 20 0.49
ACGTcount: A:0.51, C:0.26, G:0.00, T:0.22
Consensus pattern (15 bp):
AAACCCTAAAATCTC
Found at i:7832053 original size:28 final size:27
Alignment explanation
Indices: 7831943--7832053 Score: 107
Period size: 28 Copynumber: 3.9 Consensus size: 27
7831933 CTCCAAACTT
* *
7831943 TCAAACCCTAAAATTAAATCATAAATCC
1 TCAAACCCTAAAATAAAAACATAAAT-C
* *
7831971 TTTAAACCCTAAAACT-AAAACTTTAAATC
1 -TCAAACCCTAAAA-TAAAAAC-ATAAATC
* *
7832000 TCAAACCCTAAAATCAAAACCTTAAATC
1 TCAAACCCTAAAAT-AAAAACATAAATC
7832028 TCAAACCCTAAAATAAGAAACATAAA
1 TCAAACCCTAAAATAA-AAACATAAA
7832054 CCCCAAAATC
Statistics
Matches: 70, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
27 3 0.04
28 40 0.57
29 21 0.30
30 6 0.09
ACGTcount: A:0.52, C:0.23, G:0.01, T:0.23
Consensus pattern (27 bp):
TCAAACCCTAAAATAAAAACATAAATC
Found at i:7832054 original size:21 final size:22
Alignment explanation
Indices: 7832030--7832081 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
7832020 CTTAAATCTC
7832030 AAACCCTAAAATAAGAAACAT-
1 AAACCCTAAAATAAGAAACATG
* ** *
7832051 AAACCCCAAAATCTGAAACTTG
1 AAACCCTAAAATAAGAAACATG
7832073 AAACCCTAA
1 AAACCCTAA
7832082 CCTTAAAATC
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 17 0.68
22 8 0.32
ACGTcount: A:0.54, C:0.25, G:0.06, T:0.15
Consensus pattern (22 bp):
AAACCCTAAAATAAGAAACATG
Found at i:7833965 original size:24 final size:23
Alignment explanation
Indices: 7833944--7833987 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
7833934 ATTCTTTATG
7833944 AAAAAAA-ATGTTTTTCCTTTTA
1 AAAAAAAGATGTTTTTCCTTTTA
* *
7833966 AAAAAAAGATTTTTTTTCTTTT
1 AAAAAAAGATGTTTTTCCTTTT
7833988 TTTTTTGAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.39, C:0.07, G:0.05, T:0.50
Consensus pattern (23 bp):
AAAAAAAGATGTTTTTCCTTTTA
Found at i:7838111 original size:8 final size:9
Alignment explanation
Indices: 7838092--7838122 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
7838082 GATTTCAAAA
7838092 AAAAAAGAG
1 AAAAAAGAG
7838101 AAAAAAG-G
1 AAAAAAGAG
7838109 AAAAAAGAG
1 AAAAAAGAG
7838118 AAAAA
1 AAAAA
7838123 GAAGTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (9 bp):
AAAAAAGAG
Found at i:7838662 original size:18 final size:19
Alignment explanation
Indices: 7838633--7838671 Score: 71
Period size: 18 Copynumber: 2.1 Consensus size: 19
7838623 TGAACTATGC
7838633 GATCGATCATATTCCACTT
1 GATCGATCATATTCCACTT
7838652 GATCG-TCATATTCCACTT
1 GATCGATCATATTCCACTT
7838670 GA
1 GA
7838672 ACTAAGGGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.36
Consensus pattern (19 bp):
GATCGATCATATTCCACTT
Found at i:7838701 original size:9 final size:9
Alignment explanation
Indices: 7838687--7838728 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
7838677 GGGGCATCAC
7838687 AAAAAAAAT
1 AAAAAAAAT
*
7838696 AAAAAAAGT
1 AAAAAAAAT
*
7838705 -AAAAAGAT
1 AAAAAAAAT
7838713 AAAAAAAAAT
1 -AAAAAAAAT
7838723 AAAAAA
1 AAAAAA
7838729 GACATTTTCG
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
8 6 0.22
9 14 0.52
10 7 0.26
ACGTcount: A:0.86, C:0.00, G:0.05, T:0.10
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:7840895 original size:86 final size:86
Alignment explanation
Indices: 7840736--7840904 Score: 214
Period size: 86 Copynumber: 2.0 Consensus size: 86
7840726 ATCCAAAAAT
** * * * *
7840736 GTTGATTCCTAAGACCTCCGAGCATAAATTTGATTCGTGGTGTTATCCCAATTAATTTATTATTT
1 GTTGATTCCTAAGACCTCCGAGCATAAATTCAATTCGCGATGTTATCACAATTAATTCATTATTT
*
7840801 TTCAACTTGTGGTATTGTCCA
66 TTCAACTTGCGGTATTGTCCA
* *
7840822 GTTGATTCCTAAGACCTTCGAGGATAAATTCAATTCGCGATGTTATCACAATCT-ATTCATTATT
1 GTTGATTCCTAAGACCTCCGAGCATAAATTCAATTCGCGATGTTATCACAAT-TAATTCATTATT
** *
7840886 TTTTGACTTGCGGTGTTGT
65 TTTCAACTTGCGGTATTGT
7840905 TTTATCGATT
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
86 69 0.99
87 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.41
Consensus pattern (86 bp):
GTTGATTCCTAAGACCTCCGAGCATAAATTCAATTCGCGATGTTATCACAATTAATTCATTATTT
TTCAACTTGCGGTATTGTCCA
Found at i:7841025 original size:109 final size:109
Alignment explanation
Indices: 7840824--7841034 Score: 289
Period size: 109 Copynumber: 1.9 Consensus size: 109
7840814 ATTGTCCAGT
* *
7840824 TGATTCCTAAGACCTTCGAGGATAAATTCAATTCGCGATGTTATCACAATCTATTCATTATTTTT
1 TGATTCCTAAGACCTTCGAGGATAAATTCAATTCACGATGTTATCACAATCGATTCATTATTTTT
* * *
7840889 TGACTTGCGGTGTTGTTTTATCGATTCTGTAAAACCTCCGGACA
66 TGACTTGCAGTGTTGTTCTATCAATTCTGTAAAACCTCCGGACA
* * * * *
7840933 TGATTCCTATGACC-TCTAGGCATAAATTCAATTCACGGTGTTATCCCGATCGATTCATTATTTT
1 TGATTCCTAAGACCTTCGAGG-ATAAATTCAATTCACGATGTTATCACAATCGATTCATTATTTT
* * *
7840997 TTGATTTGCAGTGTTGTTCTGTCAATTCTGTAAGACCT
65 TTGACTTGCAGTGTTGTTCTATCAATTCTGTAAAACCT
7841035 GTGAGCATGA
Statistics
Matches: 88, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
108 5 0.06
109 83 0.94
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (109 bp):
TGATTCCTAAGACCTTCGAGGATAAATTCAATTCACGATGTTATCACAATCGATTCATTATTTTT
TGACTTGCAGTGTTGTTCTATCAATTCTGTAAAACCTCCGGACA
Found at i:7841074 original size:22 final size:22
Alignment explanation
Indices: 7841021--7841086 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
7841011 TGTTCTGTCA
* * *
7841021 ATTCTGTAAGACCTGTGAGCATG
1 ATTCT-TAAGACTTTTGGGCATG
7841044 ATTCTTAAGACTTTTGGGCATG
1 ATTCTTAAGACTTTTGGGCATG
*
7841066 ATT-TCTAAGATTTTTGGGCAT
1 ATTCT-TAAGACTTTTGGGCAT
7841087 AAATTTGATT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
21 1 0.03
22 32 0.84
23 5 0.13
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.39
Consensus pattern (22 bp):
ATTCTTAAGACTTTTGGGCATG
Found at i:7841329 original size:219 final size:218
Alignment explanation
Indices: 7840951--7841347 Score: 532
Period size: 219 Copynumber: 1.8 Consensus size: 218
7840941 ATGACCTCTA
* * * * * *
7840951 GGCATAAATTCAATTCACGGTGTTATCCCGATCGATTCATTATTTTTTGATTTGCAGTGTTGTTC
1 GGCATAAATTCAATTCACGATGTTATCCCAATCGATTCATTATTTTTTGACTTGCAATGTTATCC
*** * * ** *
7841016 TGTCAATTCTGTAAGACCTGTGAGCATGATTCTTAAGACTTTTGGGCATGATTTCTAAGATTTTT
66 TGTCAATTCTGTAAGACCTGTGAGCATGATTCTTAAGACTTCCAGACATGATTTATAAGACCTGT
*
7841081 GGGCATAAATTTGATTCGCAGTGTTATCCCGATCGATTCATT-ATTTTTCGACTTACGATGTTAT
131 GGGCATAAATTCGATTCGCAGTGTTATCCCGATCGATTC-TTGATTTTTCGACTTACGATGTTAT
7841145 CCAGTCGACTCTATAAGACCTCCG
195 CCAGTCGACTCTATAAGACCTCCG
* *
7841169 GGCATAAATTCGA-TCGCGATGTTATCCCAATCGATTTC-TTA-TTTTTGACTTGCAATGTTATC
1 GGCATAAATTCAATTCACGATGTTATCCCAATCGA-TTCATTATTTTTTGACTTGCAATGTTAT-
* * *
7841231 CCTTTCAATTCTGTAAGACCTTTTGAGCATGATTTTATAAGACTTCCAGACATGATTTATAAGAC
64 CCTGTCAATTCTGTAAGACC-TGTGAGCATGATTCT-TAAGACTTCCAGACATGATTTATAAGAC
*
7841296 CTGTGGGCATAAATTCGATTCGCGGTGTTATCCCGATCGATTCTTGATTTTT
127 CTGTGGGCATAAATTCGATTCGCAGTGTTATCCCGATCGATTCTTGATTTTT
7841348 TTATTACGGT
Statistics
Matches: 153, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
216 17 0.11
217 39 0.25
218 30 0.20
219 67 0.44
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.39
Consensus pattern (218 bp):
GGCATAAATTCAATTCACGATGTTATCCCAATCGATTCATTATTTTTTGACTTGCAATGTTATCC
TGTCAATTCTGTAAGACCTGTGAGCATGATTCTTAAGACTTCCAGACATGATTTATAAGACCTGT
GGGCATAAATTCGATTCGCAGTGTTATCCCGATCGATTCTTGATTTTTCGACTTACGATGTTATC
CAGTCGACTCTATAAGACCTCCG
Found at i:7841534 original size:22 final size:22
Alignment explanation
Indices: 7841509--7841570 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
7841499 GTCGATTCTG
*
7841509 TAAGACCTCCGGACATGATTTC
1 TAAGACCTCCGGACATAATTTC
* ** *
7841531 TAAGACTTTTGGACATAATTTT
1 TAAGACCTCCGGACATAATTTC
*
7841553 TAAGACCTCCGGGCATAA
1 TAAGACCTCCGGACATAA
7841571 ATTCGATTCG
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.31
Consensus pattern (22 bp):
TAAGACCTCCGGACATAATTTC
Found at i:7841552 original size:132 final size:132
Alignment explanation
Indices: 7841158--7841668 Score: 543
Period size: 132 Copynumber: 3.9 Consensus size: 132
7841148 GTCGACTCTA
7841158 TAAGACCTCCGGGCATAAATTCGA-TCGCGATGTTATCCCAATCGATTTCTT-A-TTTTTGACTT
1 TAAGACCTCCGGGCATAAATTCGATTCGCGATGTTATCCCAATCGA-TTCTTGATTTTTTGACTT
* ** ** * ** *
7841220 GCAATGTTATCCCTTTCAATTCTGTAAGACCTTTTGAGCATGATTTTATAAGACTTCCA-GACAT
65 ACGGTGTTATCCCAATCGATTCTGTAAGACC-TCCGAGCATGA-TTTCTAAGACTT-CAGGACAT
*
7841284 GATTTA
127 GATTTT
** * * *
7841290 TAAGACCTGTGGGCATAAATTCGATTCGCGGTGTTATCCCGATCGATTCTTGATTTTTTTA-TTA
1 TAAGACCTCCGGGCATAAATTCGATTCGCGATGTTATCCCAATCGATTCTTGATTTTTTGACTTA
* * * *
7841354 CGGTGTTGTCCCAATCGATTCTGTAAAACCTTCGAGCATGA-TTCTTAAGACTTCCAGG-TATGA
66 CGGTGTTATCCCAATCGATTCTGTAAGACCTCCGAGCATGATTTC-TAAGACTT-CAGGACATGA
7841417 TTTT
129 TTTT
* * * * * * * * * *
7841421 TAATACCTCCGGACATAATTTTGATTCACGATGTTATCTCGATCGATTCTTGACTTTTCGACTTG
1 TAAGACCTCCGGGCATAAATTCGATTCGCGATGTTATCCCAATCGATTCTTGATTTTTTGACTTA
* * ** *
7841486 CGGTCTTATCCCAGTCGATTCTGTAAGACCTCCG-GACATGATTTCTAAGACTTTTGGACATAAT
66 CGGTGTTATCCCAATCGATTCTGTAAGACCTCCGAG-CATGATTTCTAAGACTTCAGGACATGAT
7841550 TTT
130 TTT
* * *
7841553 TAAGACCTCCGGGCATAAATTCGATTCGCGGTGTTATCCCAATCAATTCTTAATTTTTTGACTTA
1 TAAGACCTCCGGGCATAAATTCGATTCGCGATGTTATCCCAATCGATTCTTGATTTTTTGACTTA
* * *
7841618 CGGTGTTGTCCCAATTGATTCTGTAAGACCTCCGAGCATGATTCCTAAGAC
66 CGGTGTTATCCCAATCGATTCTGTAAGACCTCCGAGCATGATTTCTAAGAC
7841669 CTTCGAGCAT
Statistics
Matches: 312, Mismatches: 57, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
130 2 0.01
131 70 0.22
132 185 0.59
133 49 0.16
134 6 0.02
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.37
Consensus pattern (132 bp):
TAAGACCTCCGGGCATAAATTCGATTCGCGATGTTATCCCAATCGATTCTTGATTTTTTGACTTA
CGGTGTTATCCCAATCGATTCTGTAAGACCTCCGAGCATGATTTCTAAGACTTCAGGACATGATT
TT
Found at i:7841559 original size:263 final size:264
Alignment explanation
Indices: 7841162--7841668 Score: 671
Period size: 263 Copynumber: 1.9 Consensus size: 264
7841152 ACTCTATAAG
* * * *
7841162 ACCTCCGGGCATAAATTCGATCGCGATGTTATCCCAATCGATTTCTTATTTTTGACTTGCAATGT
1 ACCTCCGGACATAAATTCGATCACGATGTTATCCCAATCGATTTCTTATTTTCGACTTGCAATCT
** *** *
7841227 TATCCCTTTCAATTCTGTAAGACCTTTTGAGCATGATTTTATAAGACTTCCAGACATGATTTATA
66 TATCCCAGTCAATTCTGTAAGACCTCCGGAGCATGATTTTATAAGACTTCCAGACATAATTTATA
** * * * *
7841292 AGACCTGTGGGCATAAATTCGATTCGCGGTGTTATCCCGATCGATTCTTGATTTTTTTA-TTACG
131 AGACCTCCGGGCATAAATTCGATTCGCGGTGTTATCCCAATCAATTCTTAATTTTTTGACTTACG
* *
7841356 GTGTTGTCCCAATCGATTCTGTAAAACCTTCGAGCATGATTCTTAAGACTTCCAGGTATGATTTT
196 GTGTTGTCCCAATCGATTCTGTAAAACCTCCGAGCATGATTCCTAAGACTTCCAGGTATGATTTT
7841421 TAAT
261 TAAT
* * * * **
7841425 ACCTCCGGACATAATTTTGATTCACGATGTTATCTCGATCGA-TTCTTGACTTTTCGACTTGCGG
1 ACCTCCGGACATAAATTCGA-TCACGATGTTATCCCAATCGATTTCTT-A-TTTTCGACTTGCAA
* * ***
7841489 TCTTATCCCAGTCGATTCTGTAAGACCTCCGGA-CATGA-TTTCTAAGACTTTTGGACATAATTT
63 TCTTATCCCAGTCAATTCTGTAAGACCTCCGGAGCATGATTTTATAAGACTTCCAGACATAATTT
*
7841552 TTAAGACCTCCGGGCATAAATTCGATTCGCGGTGTTATCCCAATCAATTCTTAATTTTTTGACTT
128 ATAAGACCTCCGGGCATAAATTCGATTCGCGGTGTTATCCCAATCAATTCTTAATTTTTTGACTT
* *
7841617 ACGGTGTTGTCCCAATTGATTCTGTAAGACCTCCGAGCATGATTCCTAAGAC
193 ACGGTGTTGTCCCAATCGATTCTGTAAAACCTCCGAGCATGATTCCTAAGAC
7841669 CTTCGAGCAT
Statistics
Matches: 208, Mismatches: 32, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
263 97 0.47
264 74 0.36
265 37 0.18
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.37
Consensus pattern (264 bp):
ACCTCCGGACATAAATTCGATCACGATGTTATCCCAATCGATTTCTTATTTTCGACTTGCAATCT
TATCCCAGTCAATTCTGTAAGACCTCCGGAGCATGATTTTATAAGACTTCCAGACATAATTTATA
AGACCTCCGGGCATAAATTCGATTCGCGGTGTTATCCCAATCAATTCTTAATTTTTTGACTTACG
GTGTTGTCCCAATCGATTCTGTAAAACCTCCGAGCATGATTCCTAAGACTTCCAGGTATGATTTT
TAAT
Found at i:7841766 original size:109 final size:109
Alignment explanation
Indices: 7841553--7841822 Score: 321
Period size: 109 Copynumber: 2.5 Consensus size: 109
7841543 ACATAATTTT
* * * *
7841553 TAAGACCTCCGGGCATAAATTCGATTCGCGGTGTTATCCCAATCAATTCTTAATTTTTTGACTTA
1 TAAGACCTTC-GGCATAAATTCGATTCGCGGTGTTGTCCCGATCGATTCTTAATTTTTTGACTTA
**
7841618 CGGTGTTGTCCCAATTGATTCTGTAAGACCTCCGAGCATGATTCC
65 CGGTGTTGTCCCAATCAATTCTGTAAGACCTCCGAGCATGATTCC
** *
7841663 TAAGACCTTCGAGCATAAATTCGATTTACGGTGTTGTCCCGATCGATTCATT-ATTTTTT-ATTT
1 TAAGACCTTCG-GCATAAATTCGATTCGCGGTGTTGTCCCGATCGATTC-TTAATTTTTTGACTT
* * * **
7841726 ATGGTGTTGTTCCAGTCAATTCTGTAAGACCTCCGAGCATGATTTT
64 ACGGTGTTGTCCCAATCAATTCTGTAAGACCTCCGAGCATGATTCC
* * *
7841772 TAAGA-CTTCTGGACATAATTTCAATTCGCGATGTTGTCCCGATCGATTCTT
1 TAAGACCTTC-GG-CATAAATTCGATTCGCGGTGTTGTCCCGATCGATTCTT
7841823 TAAATTCAAC
Statistics
Matches: 137, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
108 7 0.05
109 80 0.58
110 48 0.35
111 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.37
Consensus pattern (109 bp):
TAAGACCTTCGGCATAAATTCGATTCGCGGTGTTGTCCCGATCGATTCTTAATTTTTTGACTTAC
GGTGTTGTCCCAATCAATTCTGTAAGACCTCCGAGCATGATTCC
Found at i:7841842 original size:109 final size:109
Alignment explanation
Indices: 7841620--7841857 Score: 239
Period size: 109 Copynumber: 2.2 Consensus size: 109
7841610 TTGACTTACG
* **
7841620 GTGTTGTCCCAATTGATTCTGTAAGACCTCCGAGCATGATTCCTAAGACCTTCGAGCATAAATTC
1 GTGTTGTCTCAATCAATTCTGTAAGACCTCCGAGCATGATTCCTAAGACCTTCGAGCATAAATTC
* * * ** ** * * **
7841685 GATTTACGGTGTTGTCCCGATCGATTCATTATTTTTTATTTATG
66 AATTCACGATGTTGTCCCGATCGATTCATTAAATTCAACTCACA
* ** *
7841729 GTGTTGT-TCCAGTCAATTCTGTAAGACCTCCGAGCATGATTTTTAAGA-CTTCTG-GACATAAT
1 GTGTTGTCT-CAATCAATTCTGTAAGACCTCCGAGCATGATTCCTAAGACCTTC-GAG-CATAAA
* * *
7841791 TTCAATTCGCGATGTTGTCCCGATCGATTCTTTAAATTCAACTCGCA
63 TTCAATTCACGATGTTGTCCCGATCGATTCATTAAATTCAACTCACA
7841838 GTGTTGTCTCAATCAATTCT
1 GTGTTGTCTCAATCAATTCT
7841858 TTAATTTCGA
Statistics
Matches: 103, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
108 5 0.05
109 97 0.94
110 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.38
Consensus pattern (109 bp):
GTGTTGTCTCAATCAATTCTGTAAGACCTCCGAGCATGATTCCTAAGACCTTCGAGCATAAATTC
AATTCACGATGTTGTCCCGATCGATTCATTAAATTCAACTCACA
Found at i:7841898 original size:36 final size:36
Alignment explanation
Indices: 7841787--7841900 Score: 149
Period size: 36 Copynumber: 3.2 Consensus size: 36
7841777 CTTCTGGACA
7841787 TAATTTCAATTCGC-GATGTTGTCCCGATCGATTCTT
1 TAATTTCAATTCGCAG-TGTTGTCCCGATCGATTCTT
* * * * *
7841823 TAAATTCAACTCGCAGTGTTGTCTCAATCAATTCTT
1 TAATTTCAATTCGCAGTGTTGTCCCGATCGATTCTT
* *
7841859 TAATTTCGATTCGCAGTGTTGTCCCGATTGATTCTT
1 TAATTTCAATTCGCAGTGTTGTCCCGATCGATTCTT
7841895 TAATTT
1 TAATTT
7841901 TGACTAACGA
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
36 64 0.98
37 1 0.02
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.43
Consensus pattern (36 bp):
TAATTTCAATTCGCAGTGTTGTCCCGATCGATTCTT
Found at i:7843647 original size:15 final size:14
Alignment explanation
Indices: 7843627--7843868 Score: 128
Period size: 14 Copynumber: 16.2 Consensus size: 14
7843617 GACAATTCTT
7843627 AAATCCAAACTCCTA
1 AAATCCAAAC-CCTA
7843642 AAATCCAAACCCCTTA
1 AAATCCAAA-CCC-TA
7843658 AAATCCCAAACCCCTAA
1 AAAT-CCAAA-CCCT-A
7843675 AAATCCAAAAACCCTA
1 AAATCC--AAACCCTA
* * *
7843691 AAATCCTAACCTTT
1 AAATCCAAACCCTA
7843705 AAATCCAAACCCTA
1 AAATCCAAACCCTA
7843719 AAATCCAAAACCCTTA
1 AAATCC-AAACCC-TA
* *
7843735 AAATCCAAACCTTT
1 AAATCCAAACCCTA
* *
7843749 AAATCAAAACCC-C
1 AAATCCAAACCCTA
* ***
7843762 AAACCTCAAATTTTAA
1 AAATC-CAAACCCT-A
*
7843778 AAATCAAAACCCTA
1 AAATCCAAACCCTA
* * *
7843792 AAAACGAAACTCTA
1 AAATCCAAACCCTA
*
7843806 AATTTCCCAAACCCTA
1 AA-AT-CCAAACCCTA
* *
7843822 AAAT-TAAACCTTA
1 AAATCCAAACCCTA
* * *
7843835 AAACTTCAAAACCTTC
1 AAA--TCCAAACCCTA
7843851 AAATCCAAAACCCTA
1 AAATCC-AAACCCTA
7843866 AAA
1 AAA
7843869 ACGAAACTCT
Statistics
Matches: 173, Mismatches: 37, Indels: 34
0.71 0.15 0.14
Matches are distributed among these distances:
13 14 0.08
14 52 0.30
15 37 0.21
16 49 0.28
17 18 0.10
18 3 0.02
ACGTcount: A:0.49, C:0.31, G:0.00, T:0.20
Consensus pattern (14 bp):
AAATCCAAACCCTA
Found at i:7843661 original size:16 final size:16
Alignment explanation
Indices: 7843627--7843745 Score: 124
Period size: 16 Copynumber: 7.7 Consensus size: 16
7843617 GACAATTCTT
*
7843627 AAATCCAAACTCC-TA
1 AAATCCAAACCCCTTA
7843642 AAATCCAAACCCCTTA
1 AAATCCAAACCCCTTA
*
7843658 AAATCCCAAACCCCTAA
1 AAAT-CCAAACCCCTTA
*
7843675 AAATCCAAAAACCC-TA
1 AAATCC-AAACCCCTTA
* *
7843691 AAATCCTAA--CCTTT
1 AAATCCAAACCCCTTA
7843705 AAATCCAAA-CCC-TA
1 AAATCCAAACCCCTTA
*
7843719 AAATCCAAAACCCTTA
1 AAATCCAAACCCCTTA
7843735 AAATCCAAACC
1 AAATCCAAACC
7843746 TTTAAATCAA
Statistics
Matches: 88, Mismatches: 9, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
13 2 0.02
14 19 0.22
15 19 0.22
16 27 0.31
17 21 0.24
ACGTcount: A:0.48, C:0.34, G:0.00, T:0.18
Consensus pattern (16 bp):
AAATCCAAACCCCTTA
Found at i:7843719 original size:28 final size:30
Alignment explanation
Indices: 7843627--7843760 Score: 125
Period size: 30 Copynumber: 4.4 Consensus size: 30
7843617 GACAATTCTT
7843627 AAATCC-AAACTCC-TAAAATCCAAACCCCTTA
1 AAATCCAAAAC-CCTTAAAATCCAAA-CCC-TA
* *
7843658 AAATCCCAAACCCCTAAAAATCCAAAAACCCTA
1 AAAT-CCAAAACCCTTAAAATCC--AAACCCTA
* *
7843691 AAATCC-TAA-CCTTTAAATCCAAACCCTA
1 AAATCCAAAACCCTTAAAATCCAAACCCTA
* *
7843719 AAATCCAAAACCCTTAAAATCCAAACCTTT
1 AAATCCAAAACCCTTAAAATCCAAACCCTA
7843749 AAAT-CAAAACCC
1 AAATCCAAAACCC
7843761 CAAACCTCAA
Statistics
Matches: 86, Mismatches: 10, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
28 14 0.16
29 10 0.12
30 29 0.34
31 5 0.06
32 6 0.07
33 16 0.19
34 3 0.03
35 3 0.03
ACGTcount: A:0.48, C:0.34, G:0.00, T:0.19
Consensus pattern (30 bp):
AAATCCAAAACCCTTAAAATCCAAACCCTA
Found at i:7843752 original size:44 final size:44
Alignment explanation
Indices: 7843627--7843760 Score: 164
Period size: 44 Copynumber: 2.9 Consensus size: 44
7843617 GACAATTCTT
*
7843627 AAATCC-AAACTCCTAAAATCCAAACCCCTTAAAATCCCAAACCCCTAA
1 AAATCCAAAAC-CCTAAAATCCAAA--CCTTTAAAT-CCAAA-CCCTAA
*
7843675 AAATCCAAAAACCCTAAAATCCTAACCTTTAAATCCAAACCCT-A
1 AAATCC-AAAACCCTAAAATCCAAACCTTTAAATCCAAACCCTAA
*
7843719 AAATCCAAAACCCTTAAAATCCAAACCTTTAAATCAAAACCC
1 AAATCCAAAACCC-TAAAATCCAAACCTTTAAATCCAAACCC
7843761 CAAACCTCAA
Statistics
Matches: 79, Mismatches: 4, Indels: 10
0.85 0.04 0.11
Matches are distributed among these distances:
43 7 0.09
44 33 0.42
45 4 0.05
46 5 0.06
47 8 0.10
48 6 0.08
49 12 0.15
50 4 0.05
ACGTcount: A:0.48, C:0.34, G:0.00, T:0.19
Consensus pattern (44 bp):
AAATCCAAAACCCTAAAATCCAAACCTTTAAATCCAAACCCTAA
Found at i:7843816 original size:73 final size:74
Alignment explanation
Indices: 7843739--7843926 Score: 195
Period size: 74 Copynumber: 2.6 Consensus size: 74
7843729 CCCTTAAAAT
* * **
7843739 CCAAACCTTTAAATCAAAACC-CCAAACCTC-AAATTTTAAAAAT-CAAAACCCTAAAAACGAAA
1 CCAAACCTTAAAAT-AAAACCTCAAAACCTCAAAACCTT-AAAATCCAAAACCCTAAAAACGAAA
7843801 CTCTAAATTTC
64 CTCTAAATTTC
* * * * *
7843812 CCAAACCCTAAAATTAAACCTTAAAACTTCAAAACCTTCAAATCCAAAACCCTAAAAACGAAACT
1 CCAAACCTTAAAATAAAACCTCAAAACCTCAAAACCTTAAAATCCAAAACCCTAAAAACGAAACT
*
7843877 CTAAATTTT
66 CTAAATTTC
* * * **
7843886 TCAAACCTTAAAATTAAACCT-TAAACCTCCTAACCTTAAAA
1 CCAAACCTTAAAATAAAACCTCAAAACCTCAAAACCTTAAAA
7843927 ATGAAATCCT
Statistics
Matches: 95, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
72 5 0.05
73 37 0.39
74 53 0.56
ACGTcount: A:0.48, C:0.27, G:0.01, T:0.23
Consensus pattern (74 bp):
CCAAACCTTAAAATAAAACCTCAAAACCTCAAAACCTTAAAATCCAAAACCCTAAAAACGAAACT
CTAAATTTC
Found at i:7843906 original size:58 final size:59
Alignment explanation
Indices: 7843827--7843968 Score: 148
Period size: 58 Copynumber: 2.4 Consensus size: 59
7843817 CCCTAAAATT
** *
7843827 AAACCTTAAAACTTCAAAACCTTCAAA-TCCAAAACCCTAAAAACGAAA-CTCTAAATTTTTC
1 AAACCTTAAAA-TT-AAAACCTTCAAACTCC-AAACCCTAAAAACGAAATC-CTAAACCTTCC
* * *
7843888 AAACCTTAAAATT-AAACCTT-AAACCTCCTAACCTTAAAAATGAAATCCTAAACCTTCC
1 AAACCTTAAAATTAAAACCTTCAAA-CTCCAAACCCTAAAAACGAAATCCTAAACCTTCC
*
7843946 AAACCCTAAAATTAAAACCTTCA
1 AAACCTTAAAATTAAAACCTTCA
7843969 CCTTTCAAAC
Statistics
Matches: 69, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
57 3 0.04
58 41 0.59
59 11 0.16
60 3 0.04
61 11 0.16
ACGTcount: A:0.47, C:0.27, G:0.01, T:0.25
Consensus pattern (59 bp):
AAACCTTAAAATTAAAACCTTCAAACTCCAAACCCTAAAAACGAAATCCTAAACCTTCC
Found at i:7843981 original size:87 final size:87
Alignment explanation
Indices: 7843884--7844134 Score: 221
Period size: 87 Copynumber: 2.9 Consensus size: 87
7843874 ACTCTAAATT
* ** *
7843884 TTTCAAACCTTAAAAT-TAAACCTTAAACCTCCTAACCT-TAAAAAT-GAAATCCTAAACCTTCC
1 TTTCAAACCTTAAAATCAAAACCCCAAACCTCC-AACCTCT-AAAATCAAAATCCTAAACCTT-C
7843946 AAACCCTAAAATTAAAACCTTCACC
63 AAACCCTAAAATTAAAACCTTCACC
* * *
7843971 TTTCAAACCTTACAATCAAAACCCCAAACCTCCAAGCTCTAAAATCAAAATTCTAAACCTTCAAA
1 TTTCAAACCTTAAAATCAAAACCCCAAACCTCCAACCTCTAAAATCAAAATCCTAAACCTTCAAA
**
7844036 CCCTAAAATT-AAACCGTAAATCC
66 CCCTAAAATTAAAACC-TTCA-CC
* * * ** * * * *
7844059 TCT-AAACCATAAAACCAAAACTTCAAATCT-CAATCCT-TAAAATCAAAACCCCAAATC-TCAA
1 TTTCAAACCTTAAAATCAAAACCCCAAACCTCCAA-CCTCTAAAATCAAAATCCTAAACCTTCAA
*
7844120 ACCCTAAAATCAAAA
65 ACCCTAAAATTAAAA
7844135 ACCTAAACCC
Statistics
Matches: 135, Mismatches: 22, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
85 14 0.10
86 27 0.20
87 63 0.47
88 31 0.23
ACGTcount: A:0.46, C:0.29, G:0.01, T:0.23
Consensus pattern (87 bp):
TTTCAAACCTTAAAATCAAAACCCCAAACCTCCAACCTCTAAAATCAAAATCCTAAACCTTCAAA
CCCTAAAATTAAAACCTTCACC
Found at i:7844005 original size:58 final size:57
Alignment explanation
Indices: 7843937--7844134 Score: 170
Period size: 58 Copynumber: 3.4 Consensus size: 57
7843927 ATGAAATCCT
* *
7843937 AAACCTTCCAAACCCTAAAATTAAAACCTTCACCTTTCAAACCTTACAATCAAAACCCC
1 AAACC-TCCAAACCCTAAAATCAAAA-CTTCACCTTTCAAACCTTAAAATCAAAACCCC
* * * * **
7843996 AAACCTCCAAGCTCTAAAATCAAAA-TTCTAAACC-TTCAAACCCTAAAAT-TAAACCGT
1 AAACCTCCAAACCCTAAAATCAAAACTTC---ACCTTTCAAACCTTAAAATCAAAACCCC
* * * ** * *
7844053 AAATCCTCTAAACCATAAAACCAAAACTTCAAATCTCAATCCTTAAAATCAAAACCCC
1 AAA-CCTCCAAACCCTAAAATCAAAACTTCACCTTTCAAACCTTAAAATCAAAACCCC
*
7844111 AAATCT-CAAACCCTAAAATCAAAA
1 AAACCTCCAAACCCTAAAATCAAAA
7844135 ACCTAAACCC
Statistics
Matches: 107, Mismatches: 25, Indels: 17
0.72 0.17 0.11
Matches are distributed among these distances:
56 19 0.18
57 22 0.21
58 55 0.51
59 11 0.10
ACGTcount: A:0.47, C:0.31, G:0.01, T:0.21
Consensus pattern (57 bp):
AAACCTCCAAACCCTAAAATCAAAACTTCACCTTTCAAACCTTAAAATCAAAACCCC
Found at i:7844148 original size:28 final size:29
Alignment explanation
Indices: 7843901--7844148 Score: 125
Period size: 29 Copynumber: 8.6 Consensus size: 29
7843891 CCTTAAAATT
* * *
7843901 AAACCTTAAACCTCCTAACCTTAAAAAT-GA
1 AAACC-TAAACCTCCAAACCCT-AAAATCAA
* *
7843931 AATCCTAAACCTTCCAAACCCTAAAAT-TA
1 AAACCTAAACC-TCCAAACCCTAAAATCAA
** * * *
7843960 AAACCTTCACCTTTCAAACCTTACAATCAA
1 AAACCTAAACC-TCCAAACCCTAAAATCAA
* * * *
7843990 AACCCCAAACCTCCAAGCTCTAAAATCAA
1 AAACCTAAACCTCCAAACCCTAAAATCAA
** * *
7844019 AATTCTAAACCTTCAAACCCTAAAAT--T
1 AAACCTAAACCTCCAAACCCTAAAATCAA
* * *
7844046 AAACCGTAAATCCTCTAAACCATAAAA-CCA
1 AAACC-TAAA-CCTCCAAACCCTAAAATCAA
* * * *
7844076 AAACTTCAAATCT-CAATCCTTAAAATCAA
1 AAACCT-AAACCTCCAAACCCTAAAATCAA
* * *
7844105 AACCCCAAATCT-CAAACCCTAAAATCAA
1 AAACCTAAACCTCCAAACCCTAAAATCAA
7844133 AAACCTAAACC-CCAAA
1 AAACCTAAACCTCCAAA
7844149 ATTTGAAACT
Statistics
Matches: 162, Mismatches: 47, Indels: 20
0.71 0.21 0.09
Matches are distributed among these distances:
27 3 0.02
28 45 0.28
29 87 0.54
30 27 0.17
ACGTcount: A:0.47, C:0.31, G:0.01, T:0.21
Consensus pattern (29 bp):
AAACCTAAACCTCCAAACCCTAAAATCAA
Found at i:7844199 original size:15 final size:15
Alignment explanation
Indices: 7844181--7844220 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
7844171 TCTAAAATCC
7844181 AAAATCCTAAACCTT
1 AAAATCCTAAACCTT
*
7844196 AAAATCCAAAACCTT
1 AAAATCCTAAACCTT
7844211 AAAAT-CTAAA
1 AAAATCCTAAA
7844221 ATTTTGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 4 0.17
15 19 0.83
ACGTcount: A:0.55, C:0.23, G:0.00, T:0.23
Consensus pattern (15 bp):
AAAATCCTAAACCTT
Found at i:7844213 original size:22 final size:22
Alignment explanation
Indices: 7844161--7844222 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
7844151 TTGAAACTTG
7844161 AAACCTT-AACTCTAAAATCCA
1 AAACCTTAAACTCTAAAATCCA
7844182 AAATCC-TAAAC-CTTAAAATCCA
1 AAA-CCTTAAACTC-TAAAATCCA
*
7844204 AAACCTTAAAATCTAAAAT
1 AAACCTTAAACTCTAAAAT
7844223 TTTGAAAACC
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
21 7 0.20
22 27 0.77
23 1 0.03
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (22 bp):
AAACCTTAAACTCTAAAATCCA
Found at i:7844221 original size:15 final size:15
Alignment explanation
Indices: 7844161--7844221 Score: 58
Period size: 15 Copynumber: 4.2 Consensus size: 15
7844151 TTGAAACTTG
*
7844161 AAACCTT-AACTCTA
1 AAACCTTAAAATCTA
7844175 AAATCC--AAAATCCT-
1 AAA-CCTTAAAAT-CTA
*
7844189 AAACCTTAAAATCCA
1 AAACCTTAAAATCTA
7844204 AAACCTTAAAATCTA
1 AAACCTTAAAATCTA
7844219 AAA
1 AAA
7844222 TTTTGAAAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 11
0.73 0.06 0.21
Matches are distributed among these distances:
13 2 0.05
14 10 0.26
15 26 0.68
ACGTcount: A:0.52, C:0.25, G:0.00, T:0.23
Consensus pattern (15 bp):
AAACCTTAAAATCTA
Found at i:7846246 original size:100 final size:101
Alignment explanation
Indices: 7846127--7846327 Score: 245
Period size: 102 Copynumber: 2.0 Consensus size: 101
7846117 CCAACACTAC
* *
7846127 CAATAGCCACCCAACAATCATC-A-TAACAAAGACCTTA-TCCTAG-AAAAG-CTCAGCCTCTTC
1 CAATAGCCACCCAACAATCA-CGATTAAAAAAGACCTCACT-CTAGAAAAAGTC-CAGCCT-TTC
7846187 TTT-TCAAAAGCCACTCTAAACCCCCTTAACAT-CTAAAA
62 TTTCTCAAAAGCCACTCTAAACCCCCTTAACATGCTAAAA
* *
7846225 CAATAAGCCACCCCAACAATCACGATTAAAAAAGACCTCACTTTAGAAAAAGTCCAGCCTTTTTT
1 CAAT-AGCCA-CCCAACAATCACGATTAAAAAAGACCTCACTCTAGAAAAAGTCCAGCCTTTCTT
* *
7846290 TCTCGAAAGCCACTCTAAACCCTCTTAACATGCTAAAA
64 TCTCAAAAGCCACTCTAAACCCCCTTAACATGCTAAAA
7846328 GCTACCCCCA
Statistics
Matches: 88, Mismatches: 6, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
98 4 0.05
99 6 0.07
100 12 0.14
101 20 0.23
102 39 0.44
103 7 0.08
ACGTcount: A:0.39, C:0.31, G:0.07, T:0.23
Consensus pattern (101 bp):
CAATAGCCACCCAACAATCACGATTAAAAAAGACCTCACTCTAGAAAAAGTCCAGCCTTTCTTTC
TCAAAAGCCACTCTAAACCCCCTTAACATGCTAAAA
Found at i:7846387 original size:19 final size:19
Alignment explanation
Indices: 7846363--7846412 Score: 75
Period size: 19 Copynumber: 2.6 Consensus size: 19
7846353 TATTTACCCC
7846363 ACCAAACCCAT-AACACAAA
1 ACCAAACCC-TCAACACAAA
*
7846382 ACCAAACCCTCAACACAGA
1 ACCAAACCCTCAACACAAA
7846401 ACCAAACCCTCA
1 ACCAAACCCTCA
7846413 TTAATATCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
18 1 0.03
19 28 0.97
ACGTcount: A:0.50, C:0.42, G:0.02, T:0.06
Consensus pattern (19 bp):
ACCAAACCCTCAACACAAA
Found at i:7847605 original size:12 final size:12
Alignment explanation
Indices: 7847588--7847621 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
7847578 TGACATCTTA
7847588 TTATAAAAAATG
1 TTATAAAAAATG
7847600 TTATAAAAAATG
1 TTATAAAAAATG
7847612 TTATAAAAAA
1 TTATAAAAAA
7847622 AGGTTGAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (12 bp):
TTATAAAAAATG
Found at i:7850813 original size:161 final size:161
Alignment explanation
Indices: 7850426--7850891 Score: 764
Period size: 156 Copynumber: 2.9 Consensus size: 161
7850416 TTAAAATTTT
* * * *
7850426 ACCAAGTAGTTAGTTGTTGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
1 ACCAAGTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
* *
7850491 AAATTCTCTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
66 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
* *
7850556 GATTATTTAAAG-----AAAAATCAAGATCA
131 GATTAATTAAAGAAAAAAAAAATCAAAATCA
*
7850582 ACCAATTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
1 ACCAAGTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
7850647 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
66 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
7850712 GATTAATTAAAGAAAAAAAAAATCAAAATCA
131 GATTAATTAAAGAAAAAAAAAATCAAAATCA
* *
7850743 GCCAAGTAATTAATTATCGGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
1 ACCAAGTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
* *
7850808 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTTTACTTGTAGAGGCTCCGTCGTC
66 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTG-TTTCACTTGCAGAGGCTCCGTCGTC
7850873 GGATTAATTAAA-AAAAAAA
130 GGATTAATTAAAGAAAAAAA
7850892 GAAGAAAAAA
Statistics
Matches: 290, Mismatches: 14, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
156 134 0.46
161 121 0.42
162 35 0.12
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.29
Consensus pattern (161 bp):
ACCAAGTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
GATTAATTAAAGAAAAAAAAAATCAAAATCA
Found at i:7850940 original size:1 final size:1
Alignment explanation
Indices: 7850936--7850962 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
7850926 AAAAAAATTC
7850936 AAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
7850963 CCTGGAGCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:7851328 original size:19 final size:19
Alignment explanation
Indices: 7851286--7851332 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
7851276 AGAACACCGG
*
7851286 TGCCGGATTCTGGAAATGT
1 TGCCGGAATCTGGAAATGT
* * *
7851305 CGCCGGAATCTGGAATTTT
1 TGCCGGAATCTGGAAATGT
7851324 TGCCGGAAT
1 TGCCGGAAT
7851333 ATGGCCGGAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (19 bp):
TGCCGGAATCTGGAAATGT
Found at i:7851958 original size:3 final size:3
Alignment explanation
Indices: 7851950--7851978 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
7851940 ATCTTACAAA
7851950 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7851979 ATATATAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7852163 original size:20 final size:20
Alignment explanation
Indices: 7852141--7852205 Score: 94
Period size: 20 Copynumber: 3.2 Consensus size: 20
7852131 TTACCCATTT
* *
7852141 GGGCCAGGCCCAAATGATCT
1 GGGCCAGGCCCAATTGATCC
*
7852161 GGGTCAGGCCCAATTGATCC
1 GGGCCAGGCCCAATTGATCC
*
7852181 GGGTCAGGCCCAATTGATCC
1 GGGCCAGGCCCAATTGATCC
7852201 GGGCC
1 GGGCC
7852206 CGGACCTGAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.20, C:0.31, G:0.32, T:0.17
Consensus pattern (20 bp):
GGGCCAGGCCCAATTGATCC
Found at i:7852323 original size:1 final size:1
Alignment explanation
Indices: 7852319--7852415 Score: 86
Period size: 1 Copynumber: 97.0 Consensus size: 1
7852309 TTATTTTTGA
* * * ** ** * *
7852319 TTTTTTTTTTTTTGTTTTTATTTTTTTATTTTTTTGATTTTTTTTTGATTTTTTGTTTTTGTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
7852384 TTGTTTTTTTGTTTTTTTTTTTGTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
7852416 GGCCGAAGCT
Statistics
Matches: 74, Mismatches: 22, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 74 1.00
ACGTcount: A:0.04, C:0.00, G:0.08, T:0.88
Consensus pattern (1 bp):
T
Found at i:7852323 original size:13 final size:12
Alignment explanation
Indices: 7852305--7852415 Score: 77
Period size: 11 Copynumber: 8.8 Consensus size: 12
7852295 TCAACTCAAC
7852305 ATTTTTATTTTTG
1 ATTTTT-TTTTTG
7852318 ATTTTTTTTTT-
1 ATTTTTTTTTTG
*
7852329 -TTTGTTTTTATTT
1 ATTT-TTTTT-TTG
*
7852342 TTTTATTTTTTTG
1 ATTT-TTTTTTTG
7852355 A-TTTTTTTTTG
1 ATTTTTTTTTTG
7852366 ATTTTTTGTTTTTG
1 A-TTTTT-TTTTTG
*
7852380 TTTTTTGTTTTTTTG
1 --ATTT-TTTTTTTG
*
7852395 TTTTTTTTTTTG
1 ATTTTTTTTTTG
7852407 -TTTTTTTTT
1 ATTTTTTTTT
7852416 GGCCGAAGCT
Statistics
Matches: 84, Mismatches: 4, Indels: 22
0.76 0.04 0.20
Matches are distributed among these distances:
10 3 0.04
11 23 0.27
12 17 0.20
13 16 0.19
14 14 0.17
15 9 0.11
16 2 0.02
ACGTcount: A:0.06, C:0.00, G:0.08, T:0.86
Consensus pattern (12 bp):
ATTTTTTTTTTG
Found at i:7852360 original size:33 final size:30
Alignment explanation
Indices: 7852319--7852416 Score: 110
Period size: 30 Copynumber: 3.2 Consensus size: 30
7852309 TTATTTTTGA
7852319 TTTT-TTTTTTTTTGTTTTTATTTTTTTATTT
1 TTTTGTTTTTTTTTGTTTTT-TTTTTTT-TTT
* *
7852350 TTTTGATTTTTTTTTGATTTTTTGTTTTTGTT
1 TTTTG-TTTTTTTTTG-TTTTTTTTTTTTTTT
*
7852382 TTTTGTTTTTTTGTT-TTTTTTTTTGTTTTT
1 TTTTGTTTTTTT-TTGTTTTTTTTTTTTTTT
7852412 TTTTG
1 TTTTG
7852417 GCCGAAGCTC
Statistics
Matches: 58, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
30 17 0.29
31 11 0.19
32 9 0.16
33 16 0.28
34 5 0.09
ACGTcount: A:0.04, C:0.00, G:0.09, T:0.87
Consensus pattern (30 bp):
TTTTGTTTTTTTTTGTTTTTTTTTTTTTTT
Found at i:7852364 original size:41 final size:40
Alignment explanation
Indices: 7852319--7852413 Score: 127
Period size: 40 Copynumber: 2.3 Consensus size: 40
7852309 TTATTTTTGA
*
7852319 TTTTTTTTTTTTTGTTTTTATTTTTTTATTTTTTTGATTTT
1 TTTTTTTTTTTTTGTTTTT-GTTTTTTATTTTTTTGATTTT
** * *
7852360 TTTTTGATTTTTTGTTTTTGTTTTTTGTTTTTTTGTTTTT
1 TTTTTTTTTTTTTGTTTTTGTTTTTTATTTTTTTGATTTT
7852400 TTTTTTGTTTTTTT
1 TTTTTT-TTTTTTT
7852414 TTGGCCGAAG
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
40 23 0.50
41 23 0.50
ACGTcount: A:0.04, C:0.00, G:0.08, T:0.87
Consensus pattern (40 bp):
TTTTTTTTTTTTTGTTTTTGTTTTTTATTTTTTTGATTTT
Found at i:7852698 original size:42 final size:39
Alignment explanation
Indices: 7852423--7852955 Score: 770
Period size: 40 Copynumber: 13.2 Consensus size: 39
7852413 TTTGGCCGAA
*
7852423 GCTCCTCTAAACAGAGACTCAACGACTTTTG-AAAGTAAATT
1 GCTCCTCTAAACAGAG--GCAACGAC-TTTGAAAAGTAAATT
*
7852464 GCTCCTCTAAACAGAGGCAACGGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCAAC-GACTTTGAAAAGTAAATT
7852504 GCTCCTCTAAACAGAGGCAACGACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCAACGACTTTGAAAAGTAAATT
7852543 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAA-TAAATT
1 GCTCCTCTAAACAGAGGCA--ACGACTTTGAAAAGTAAATT
7852583 GCTCCTCTAAACAGAGGC-ACGACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCAACGACTTTGAAAAGTAAATT
7852621 GCTCCTCTAAACAGAGGCAACGACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCAACGACTTTGAAAAGTAAATT
7852660 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCA--ACGAC-TTTGAAAAGTAAATT
7852702 GCTCCTCTAAACAGAGGCAACGGAACTTTGAAAA-TAAATT
1 GCTCCTCTAAACAGAGGCAAC-G-ACTTTGAAAAGTAAATT
7852742 GCTCCTCTAAACAGAGGCACCCACGACTTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCA---ACGAC-TTTGAAAAGTAAATT
*
7852785 GCTCCTCTAAACAGAGGCAACAGAACTTTGGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCAAC-G-ACTTT-GAAAAGTAAATT
7852827 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAAGTAAATTT
1 GCTCCTCTAAACAGAGGCA--ACGAC-TTTG-AAAAGTAAA-TT
*
7852871 GCTCCTCTAAACAGAGGCAACGAACTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCAACG-ACTTTGAAAAGTAAATT
7852911 GCTCCTCTAAACAGAGGCAACGAACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCAACG-ACTTTGAAAAGTAAATT
7852951 -CTCCT
1 GCTCCT
7852956 AAGACGATCA
Statistics
Matches: 461, Mismatches: 6, Indels: 52
0.89 0.01 0.10
Matches are distributed among these distances:
37 13 0.03
38 24 0.05
39 88 0.19
40 128 0.28
41 57 0.12
42 87 0.19
43 41 0.09
44 23 0.05
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.23
Consensus pattern (39 bp):
GCTCCTCTAAACAGAGGCAACGACTTTGAAAAGTAAATT
Found at i:7853988 original size:10 final size:9
Alignment explanation
Indices: 7853967--7854072 Score: 87
Period size: 9 Copynumber: 11.8 Consensus size: 9
7853957 TTTCATTCAC
7853967 TTTTTC-TT
1 TTTTTCATT
7853975 TTTTTCCATT
1 TTTTT-CATT
*
7853985 TTTTCCATT
1 TTTTTCATT
7853994 TTTTT--TT
1 TTTTTCATT
*
7854001 CATTTTTCATCA
1 --TTTTTCAT-T
7854013 TTTTTCATT
1 TTTTTCATT
*
7854022 TTTTCCA-T
1 TTTTTCATT
7854030 TTTTTCATT
1 TTTTTCATT
*
7854039 TTTTTTATT
1 TTTTTCATT
7854048 TTTTT-ATT
1 TTTTTCATT
*
7854056 TTTTTGTATT
1 TTTTT-CATT
7854066 TTTTTCA
1 TTTTTCA
7854073 AGCATAGTAT
Statistics
Matches: 80, Mismatches: 8, Indels: 19
0.75 0.07 0.18
Matches are distributed among these distances:
7 2 0.03
8 20 0.25
9 35 0.44
10 22 0.28
11 1 0.01
ACGTcount: A:0.11, C:0.12, G:0.01, T:0.75
Consensus pattern (9 bp):
TTTTTCATT
Found at i:7854006 original size:7 final size:8
Alignment explanation
Indices: 7853962--7854059 Score: 72
Period size: 8 Copynumber: 11.2 Consensus size: 8
7853952 TCCTTTTTCA
*
7853962 TTCACTTT
1 TTCATTTT
*
7853970 TTCTTTTT
1 TTCATTTT
7853978 TTCCATTTT
1 TT-CATTTT
7853987 TTCCATTTTTTT
1 TT-CA---TTTT
7853999 TTCA-TTT
1 TTCATTTT
7854006 TTCATCATTT
1 TTCAT--TTT
7854016 TTCATTTT
1 TTCATTTT
7854024 TTCCATTTT
1 TT-CATTTT
7854033 TTCATTTTT
1 TTCA-TTTT
*
7854042 TTTATTTT
1 TTCATTTT
*
7854050 TTTATTTT
1 TTCATTTT
7854058 TT
1 TT
7854060 TGTATTTTTT
Statistics
Matches: 77, Mismatches: 4, Indels: 18
0.78 0.04 0.18
Matches are distributed among these distances:
7 7 0.09
8 29 0.38
9 25 0.32
10 8 0.10
11 2 0.03
12 6 0.08
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.74
Consensus pattern (8 bp):
TTCATTTT
Found at i:7854017 original size:46 final size:47
Alignment explanation
Indices: 7853955--7854044 Score: 148
Period size: 46 Copynumber: 1.9 Consensus size: 47
7853945 TGAGTCCTCC
*
7853955 TTTTTCATTCACTTTTTCTTTTTTTCCATTTTTTCCATTTTTTTTTCA
1 TTTTTCATTCACTTTTTCATTTTTTCCATTTTTT-CATTTTTTTTTCA
7854003 TTTTTCA-TCA-TTTTTCATTTTTTCCATTTTTTCATTTTTTTT
1 TTTTTCATTCACTTTTTCATTTTTTCCATTTTTTCATTTTTTTT
7854045 ATTTTTTTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
45 10 0.24
46 21 0.51
47 3 0.07
48 7 0.17
ACGTcount: A:0.11, C:0.17, G:0.00, T:0.72
Consensus pattern (47 bp):
TTTTTCATTCACTTTTTCATTTTTTCCATTTTTTCATTTTTTTTTCA
Found at i:7854048 original size:17 final size:17
Alignment explanation
Indices: 7853967--7854060 Score: 82
Period size: 17 Copynumber: 5.3 Consensus size: 17
7853957 TTTCATTCAC
*
7853967 TTTTTCTTTTTTTCCATT
1 TTTTTCATTTTTT-CATT
* *
7853985 TTTTCCATTTTTT-TTT
1 TTTTTCATTTTTTCATT
7854001 CATTTTTCATCATTTTTCATT
1 --TTTTTCAT--TTTTTCATT
*
7854022 TTTTCCATTTTTTCATT
1 TTTTTCATTTTTTCATT
* *
7854039 TTTTTTATTTTTTTATT
1 TTTTTCATTTTTTCATT
7854056 TTTTT
1 TTTTT
7854061 GTATTTTTTT
Statistics
Matches: 62, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
16 2 0.03
17 28 0.45
18 18 0.29
19 7 0.11
20 5 0.08
21 2 0.03
ACGTcount: A:0.11, C:0.13, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTTTCATTTTTTCATT
Found at i:7854067 original size:17 final size:17
Alignment explanation
Indices: 7853995--7854069 Score: 80
Period size: 17 Copynumber: 4.4 Consensus size: 17
7853985 TTTTCCATTT
* *
7853995 TTTTTTCATTTTTCATCA
1 TTTTTTCATTTTT-TTTA
**
7854013 -TTTTTCATTTTTTCCA
1 TTTTTTCATTTTTTTTA
7854029 TTTTTTCATTTTTTTTA
1 TTTTTTCATTTTTTTTA
*
7854046 TTTTTTTATTTTTTTGTA
1 TTTTTTCATTTTTTT-TA
7854064 TTTTTT
1 TTTTTT
7854070 TCAAGCATAG
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
16 2 0.04
17 40 0.80
18 8 0.16
ACGTcount: A:0.12, C:0.09, G:0.01, T:0.77
Consensus pattern (17 bp):
TTTTTTCATTTTTTTTA
Found at i:7858964 original size:15 final size:14
Alignment explanation
Indices: 7858940--7858969 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
7858930 TCTTTCTCCT
7858940 TCTTTAGCCTTCTC
1 TCTTTAGCCTTCTC
7858954 TCTTCTAGCCTTCTC
1 TCTT-TAGCCTTCTC
7858969 T
1 T
7858970 AGCATTTCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.07, C:0.37, G:0.07, T:0.50
Consensus pattern (14 bp):
TCTTTAGCCTTCTC
Found at i:7864617 original size:161 final size:161
Alignment explanation
Indices: 7864229--7864708 Score: 767
Period size: 156 Copynumber: 3.0 Consensus size: 161
7864219 TTAAAATTTT
* * * *
7864229 ACCAAGTAGTTAGTTGTTGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
1 ACCAAGTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
* *
7864294 AAATTCTCTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
66 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
* *
7864359 GATTATTTAAAG-----AAAAATCAAGATCA
131 GATTAATTAAAGAAAAAAAAAATCAAAATCA
*
7864385 ACCAATTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
1 ACCAAGTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
7864450 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
66 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
7864515 GATTAATTAAAGAAAAAAAAAATCAAAATCA
131 GATTAATTAAAGAAAAAAAAAATCAAAATCA
*
7864546 GCCAAGTAATTAATTATC-AGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAG
1 ACCAAGTAATTAATTATCGA-AAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAG
* *
7864610 AAAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTTTACTTGTAGAGGCTCCGTCGT
65 AAAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTG-TTTCACTTGCAGAGGCTCCGTCGT
*
7864675 CGGATTAATTAAAGAAAAAAGAAAA-AAAAATCA
129 CGGATTAATTAAAGAAAAAA-AAAATCAAAATCA
7864708 A
1 A
7864709 GATCAAAATC
Statistics
Matches: 301, Mismatches: 15, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
156 134 0.45
160 1 0.00
161 113 0.38
162 49 0.16
163 4 0.01
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.29
Consensus pattern (161 bp):
ACCAAGTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
GATTAATTAAAGAAAAAAAAAATCAAAATCA
Found at i:7864731 original size:1 final size:1
Alignment explanation
Indices: 7864725--7864749 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
7864715 AATCAAAGTC
7864725 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
7864750 CCTGGAGCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:7865106 original size:19 final size:19
Alignment explanation
Indices: 7865064--7865110 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
7865054 AGAACACCGG
*
7865064 TGCCGGATTCTGGAAATGT
1 TGCCGGAATCTGGAAATGT
* * *
7865083 CGCCGGAATCTGGAATTTT
1 TGCCGGAATCTGGAAATGT
7865102 TGCCGGAAT
1 TGCCGGAAT
7865111 ATGGCCGGAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (19 bp):
TGCCGGAATCTGGAAATGT
Found at i:7865740 original size:3 final size:3
Alignment explanation
Indices: 7865732--7865760 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
7865722 ATCTTACAAA
7865732 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7865761 ATATATAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7865869 original size:13 final size:14
Alignment explanation
Indices: 7865853--7865881 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7865843 ATAAAAATAC
7865853 AAAA-GAAAAAAAA
1 AAAAGGAAAAAAAA
7865866 AAAAGGAAAAAAAA
1 AAAAGGAAAAAAAA
7865880 AA
1 AA
7865882 TAATAATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.27
14 11 0.73
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (14 bp):
AAAAGGAAAAAAAA
Found at i:7865942 original size:20 final size:20
Alignment explanation
Indices: 7865920--7865984 Score: 94
Period size: 20 Copynumber: 3.2 Consensus size: 20
7865910 TTACCCATTT
* *
7865920 GGGCCAGGCCCAAATGATCT
1 GGGCCAGGCCCAATTGATCC
*
7865940 GGGTCAGGCCCAATTGATCC
1 GGGCCAGGCCCAATTGATCC
*
7865960 GGGTCAGGCCCAATTGATCC
1 GGGCCAGGCCCAATTGATCC
7865980 GGGCC
1 GGGCC
7865985 CGGACCTGAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.20, C:0.31, G:0.32, T:0.17
Consensus pattern (20 bp):
GGGCCAGGCCCAATTGATCC
Found at i:7866451 original size:152 final size:152
Alignment explanation
Indices: 7866165--7866612 Score: 758
Period size: 156 Copynumber: 2.9 Consensus size: 152
7866155 TTTTTTTTCT
* *
7866165 TTTTTCTTTAATTAATCCGACGACGGAGCCTCTACAAGTGAAACAGTAGTTTTTCTTGCATACTC
1 TTTTTCTTTAATAAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
7866230 TTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTCCA
66 TTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTCCA
*
7866295 ATAATTAATTGGATGATTTTGTA
131 ATAATTAATTGGATGATCTTG-A
7866318 TTTTT-TTTAATAAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
1 TTTTTCTTTAATAAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
*
7866382 CTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCG
66 TTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAA-TTTC-
* *
7866447 ATAATTAATTAATTGGTTGATCTTGA
129 -CAA-TAATTAATTGGATGATCTTGA
7866473 TTTTTCTTTAA-ATAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACT
1 TTTTTCTTTAATA-AATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACT
7866537 CTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAA-AAGTTTC
65 CTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAA-TTTC
7866601 CAATAATTAATT
129 CAATAATTAATT
7866613 ACTTGGTAAA
Statistics
Matches: 280, Mismatches: 9, Indels: 13
0.93 0.03 0.04
Matches are distributed among these distances:
152 124 0.44
153 11 0.04
155 15 0.05
156 130 0.46
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38
Consensus pattern (152 bp):
TTTTTCTTTAATAAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
TTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTCCA
ATAATTAATTGGATGATCTTGA
Found at i:7867577 original size:226 final size:226
Alignment explanation
Indices: 7867183--7867625 Score: 832
Period size: 226 Copynumber: 2.0 Consensus size: 226
7867173 CTTAAGAAAA
7867183 GAGCTTGAGAAACTTGAGTACCATACATTAAACAAGAATTAATTGGCCAACATTTGCATAACATG
1 GAGCTTGAGAAACTTGAGTACCATACATTAAACAAGAATTAATTGGCCAACATTTGCATAACATG
*
7867248 CATTGAAATTCATATACATTTGCATAGCATACACTACTTTCAAGAAAGTATAGTGTATAAATCCA
66 CATTGAAATTCATATACATTTGCATAGCATACACTACTTTCAAGAAAGTATAGTATATAAATCCA
7867313 AGAAGCAAGGGTGTTCCAACATCCCACATAGAAAGACAGATATAAAGATATTTTACAAGTTTGAG
131 AGAAGCAAGGGTGTTCCAACATCCCACATAGAAAGACAGATATAAAGATATTTTACAAGTTTGAG
7867378 AAGAAACTTGCCAGGTAAGTTCGATCTCGAC
196 AAGAAACTTGCCAGGTAAGTTCGATCTCGAC
* * *
7867409 GAGCTTGAGAAACTTGAGTACCATACATTGAACATGAATTAATTGGCCAACATTTGCATAGCATG
1 GAGCTTGAGAAACTTGAGTACCATACATTAAACAAGAATTAATTGGCCAACATTTGCATAACATG
7867474 CATTGAAATTCATATACATTTGCATAGCATACACTACTTTCAAGAAAGTATAGTATATAAATCCA
66 CATTGAAATTCATATACATTTGCATAGCATACACTACTTTCAAGAAAGTATAGTATATAAATCCA
*
7867539 AGAAGCAAGGGTGTTCCAACATCCCACATGGAAAGACAGATATAAAGATATTTTACAAGTTTGAG
131 AGAAGCAAGGGTGTTCCAACATCCCACATAGAAAGACAGATATAAAGATATTTTACAAGTTTGAG
*
7867604 AAGAAACTTGTCAGGTAAGTTC
196 AAGAAACTTGCCAGGTAAGTTC
7867626 CTAATCCTTG
Statistics
Matches: 211, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
226 211 1.00
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (226 bp):
GAGCTTGAGAAACTTGAGTACCATACATTAAACAAGAATTAATTGGCCAACATTTGCATAACATG
CATTGAAATTCATATACATTTGCATAGCATACACTACTTTCAAGAAAGTATAGTATATAAATCCA
AGAAGCAAGGGTGTTCCAACATCCCACATAGAAAGACAGATATAAAGATATTTTACAAGTTTGAG
AAGAAACTTGCCAGGTAAGTTCGATCTCGAC
Found at i:7867800 original size:42 final size:42
Alignment explanation
Indices: 7867741--7868466 Score: 1035
Period size: 42 Copynumber: 17.1 Consensus size: 42
7867731 ATGATTGTCA
*
7867741 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
*
7867783 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* *
7867825 AAGAGCAATCTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
*
7867867 AGGAGCAATTTACTTTTTCAAAGTCATGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * * *
7867909 AGGAACAATTTAATTTTCCAAAAGTCGTGGTACCTCTGTTTAG
1 AGGAGCAATTTACTTTTTC-AAAGTCGTGGTGCCTCTGTTTAG
* *
7867952 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTATTTAG
1 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
*
7867994 AGGAGCAATCTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * *
7868036 AGGAACAATTTATTTTTTCAAAGTCGTGATGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * *
7868078 AGGAACAATTTAATTTTTCAAAGTCGTTGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* *
7868120 AGAAGCAATTTACTTTTTCAAAGTCATGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
*
7868162 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * *
7868204 AGGAGCAATTTACTTTTCCAAAATCGTGGTGTCTCTGTTTAG
1 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* *
7868246 AGAAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
7868288 AGGAGCAATTTA-TTTTTCAAAGTCGTGGTGCCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTTCAAA------GT--CGTGGTGCCTCTGTTTAG
* *
7868337 AGAAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * *
7868379 AGGAGCAATTTA-TTTTTCAAAGTTGTGATGCCTCTATTTAG
1 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * * *
7868420 AGGAGTAATTTAC-TTTTCAAAGTCGTTGAGCCTCCGTTTAG
1 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
7868461 AGGAGC
1 AGGAGC
7868467 TTTGGTAAAA
Statistics
Matches: 620, Mismatches: 53, Indels: 23
0.89 0.08 0.03
Matches are distributed among these distances:
41 72 0.12
42 468 0.75
43 38 0.06
44 2 0.00
47 2 0.00
49 29 0.05
50 9 0.01
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.37
Consensus pattern (42 bp):
AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:7868344 original size:49 final size:50
Alignment explanation
Indices: 7868270--7868369 Score: 184
Period size: 49 Copynumber: 2.0 Consensus size: 50
7868260 TTTCCAAAGT
*
7868270 CGTGGTGCCTCTGTTTAGAGGAGCAATTT-ATTTTTCAAAGTCGTGGTGC
1 CGTGGTGCCTCTGTTTAGAGAAGCAATTTAATTTTTCAAAGTCGTGGTGC
7868319 CGTGGTGCCTCTGTTTAGAGAAGCAATTTAATTTTTCAAAGTCGTGGTGC
1 CGTGGTGCCTCTGTTTAGAGAAGCAATTTAATTTTTCAAAGTCGTGGTGC
7868369 C
1 C
7868370 TCTGTTTAGA
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
49 28 0.57
50 21 0.43
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.36
Consensus pattern (50 bp):
CGTGGTGCCTCTGTTTAGAGAAGCAATTTAATTTTTCAAAGTCGTGGTGC
Found at i:7868383 original size:91 final size:91
Alignment explanation
Indices: 7868228--7868410 Score: 321
Period size: 91 Copynumber: 2.0 Consensus size: 91
7868218 TTTCCAAAAT
* *
7868228 CGTGGTGTCTCTGTTTAGAGAAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAG
1 CGTGGTGCCTCTGTTTAGAGAAGCAATTTAATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAG
*
7868293 CAATTTATTTTTCAAAGTCGTGGTGC
66 CAATTTATTTTTCAAAGTCGTGATGC
*
7868319 CGTGGTGCCTCTGTTTAGAGAAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAG
1 CGTGGTGCCTCTGTTTAGAGAAGCAATTTAATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAG
*
7868384 CAATTTATTTTTCAAAGTTGTGATGC
66 CAATTTATTTTTCAAAGTCGTGATGC
7868410 C
1 C
7868411 TCTATTTAGA
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
91 87 1.00
ACGTcount: A:0.22, C:0.16, G:0.25, T:0.38
Consensus pattern (91 bp):
CGTGGTGCCTCTGTTTAGAGAAGCAATTTAATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAG
CAATTTATTTTTCAAAGTCGTGATGC
Found at i:7868465 original size:41 final size:41
Alignment explanation
Indices: 7868325--7868466 Score: 187
Period size: 41 Copynumber: 3.4 Consensus size: 41
7868315 GTGCCGTGGT
* * *
7868325 GCCTCTGTTTAGAGAAGCAATTTAATTTTTCAAAGTCGTGGT
1 GCCTCTGTTTAGAGGAGCAATTT-ATTTTTCAAAGTCGTTGA
*
7868367 GCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTG-TGA
1 GCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTTGA
* * *
7868407 TGCCTCTATTTAGAGGAGTAATTTACTTTTCAAAGTCGTTGA
1 -GCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTTGA
*
7868449 GCCTCCGTTTAGAGGAGC
1 GCCTCTGTTTAGAGGAGC
7868467 TTTGGTAAAA
Statistics
Matches: 87, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
40 1 0.01
41 61 0.70
42 25 0.29
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (41 bp):
GCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTTGA
Found at i:7868487 original size:9 final size:9
Alignment explanation
Indices: 7868473--7868549 Score: 75
Period size: 9 Copynumber: 8.3 Consensus size: 9
7868463 GAGCTTTGGT
7868473 AAAAACAAA
1 AAAAACAAA
7868482 AAAAACAAA
1 AAAAACAAA
7868491 AAAATA-AAA
1 AAAA-ACAAA
*
7868500 AATAAATAAA
1 AA-AAACAAA
* *
7868510 TAAAATAAA
1 AAAAACAAA
7868519 AAAAACACAA
1 AAAAACA-AA
* *
7868529 AAAAATACA
1 AAAAACAAA
7868538 AAAAACAAA
1 AAAAACAAA
7868547 AAA
1 AAA
7868550 TGACAATGTT
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
9 42 0.74
10 15 0.26
ACGTcount: A:0.84, C:0.08, G:0.00, T:0.08
Consensus pattern (9 bp):
AAAAACAAA
Found at i:7868491 original size:8 final size:8
Alignment explanation
Indices: 7868473--7868549 Score: 59
Period size: 8 Copynumber: 9.5 Consensus size: 8
7868463 GAGCTTTGGT
7868473 AAAAACAAA
1 AAAAAC-AA
7868482 AAAAACAA
1 AAAAACAA
*
7868490 AAAAA-TA
1 AAAAACAA
*
7868497 AAAAATAA
1 AAAAACAA
* *
7868505 ATAAATAA
1 AAAAACAA
7868513 AATAAA-AA
1 AA-AAACAA
*
7868521 AAACACAA
1 AAAAACAA
*
7868529 AAAAATACA
1 AAAAACA-A
7868538 AAAAACAA
1 AAAAACAA
7868546 AAAA
1 AAAA
7868550 TGACAATGTT
Statistics
Matches: 56, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
7 8 0.14
8 32 0.57
9 16 0.29
ACGTcount: A:0.84, C:0.08, G:0.00, T:0.08
Consensus pattern (8 bp):
AAAAACAA
Found at i:7868533 original size:19 final size:18
Alignment explanation
Indices: 7868479--7868549 Score: 90
Period size: 20 Copynumber: 3.8 Consensus size: 18
7868469 TGGTAAAAAC
7868479 AAAAAAAACAAAAAAATA
1 AAAAAAAACAAAAAAATA
*
7868497 AAAAATAAATAAATAAAATA
1 AAAAA-AAACAAA-AAAATA
7868517 AAAAAAACACAAAAAAAT-
1 AAAAAAA-ACAAAAAAATA
*
7868535 ACAAAAAACAAAAAA
1 AAAAAAAACAAAAAA
7868550 TGACAATGTT
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
17 8 0.17
18 11 0.23
19 13 0.28
20 15 0.32
ACGTcount: A:0.85, C:0.07, G:0.00, T:0.08
Consensus pattern (18 bp):
AAAAAAAACAAAAAAATA
Found at i:7868534 original size:28 final size:29
Alignment explanation
Indices: 7868481--7868549 Score: 81
Period size: 28 Copynumber: 2.4 Consensus size: 29
7868471 GTAAAAACAA
*
7868481 AAAAAAC-AAAAAAATAAAAAATAAATA-
1 AAAAAACAAAAAAAACAAAAAATAAATAC
* *
7868508 AATAAAATAAAAAAAACACAAAA-AAATAC
1 AA-AAAACAAAAAAAACAAAAAATAAATAC
7868537 AAAAAACAAAAAA
1 AAAAAACAAAAAA
7868550 TGACAATGTT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
27 2 0.06
28 19 0.54
29 14 0.40
ACGTcount: A:0.84, C:0.07, G:0.00, T:0.09
Consensus pattern (29 bp):
AAAAAACAAAAAAAACAAAAAATAAATAC
Found at i:7868839 original size:3 final size:3
Alignment explanation
Indices: 7868819--7868885 Score: 70
Period size: 3 Copynumber: 22.3 Consensus size: 3
7868809 TTTATATGTA
7868819 TAT TATT TAT ATAGT TAT TA- TATT TAT TAT TAT TAT TAT TA- TAT TAT
1 TAT TA-T TAT -TA-T TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
7868866 TAT TAT TAT TA- TAT T-T TAT T
1 TAT TAT TAT TAT TAT TAT TAT T
7868886 TATTTTGTAT
Statistics
Matches: 56, Mismatches: 0, Indels: 16
0.78 0.00 0.22
Matches are distributed among these distances:
2 8 0.14
3 38 0.68
4 9 0.16
5 1 0.02
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:7869290 original size:26 final size:25
Alignment explanation
Indices: 7869254--7869303 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
7869244 TCATCAAAAA
* *
7869254 TTTTTTGGGAATTTTTTGAAAATTT
1 TTTTTTGGGAATTTCTGGAAAATTT
7869279 TTTTTCTGGGAATTTCTGGAAAATT
1 TTTTT-TGGGAATTTCTGGAAAATT
7869304 CCAAATTTCG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.24, C:0.04, G:0.18, T:0.54
Consensus pattern (25 bp):
TTTTTTGGGAATTTCTGGAAAATTT
Found at i:7869891 original size:17 final size:16
Alignment explanation
Indices: 7869860--7869919 Score: 59
Period size: 17 Copynumber: 3.7 Consensus size: 16
7869850 ATTTAATATT
*
7869860 TTTTATTTTTGTTTTAC
1 TTTTATTTAT-TTTTAC
* *
7869877 TTTTCTTTAGTTTTTAT
1 TTTTATTTA-TTTTTAC
*
7869894 TTTTATTTATTTTCAC
1 TTTTATTTATTTTTAC
7869910 -TTTATTTATT
1 TTTTATTTATT
7869920 ATTCTATTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
15 10 0.28
16 5 0.14
17 20 0.56
18 1 0.03
ACGTcount: A:0.15, C:0.07, G:0.03, T:0.75
Consensus pattern (16 bp):
TTTTATTTATTTTTAC
Found at i:7869912 original size:28 final size:27
Alignment explanation
Indices: 7869859--7869922 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 27
7869849 TATTTAATAT
*
7869859 TTTTTATTTTTGTTTTACTTTTCTTTA
1 TTTTTATTTTTGATTTACTTTTCTTTA
7869886 GTTTTTATTTTT-ATTTA-TTTTCACTTTA
1 -TTTTTATTTTTGATTTACTTTT--CTTTA
7869914 TTTATTATT
1 TTT-TTATT
7869923 CTATTTTCTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
26 4 0.12
27 7 0.22
28 21 0.66
ACGTcount: A:0.16, C:0.06, G:0.03, T:0.75
Consensus pattern (27 bp):
TTTTTATTTTTGATTTACTTTTCTTTA
Done.