Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25818110
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 67000 characters in sequence are not A, C, G, or T
File 41 of 127
Found at i:8172300 original size:19 final size:20
Alignment explanation
Indices: 8172271--8172319 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
8172261 TGATTATATG
*
8172271 ATATAATTTTAATGT-AAGTA
1 ATAT-ATTTTAATGTAAAATA
8172291 ATATATTTTAATGTAAAATA
1 ATATATTTTAATGTAAAATA
8172311 AT-TATTTTA
1 ATATATTTTA
8172320 TATAATTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 17 0.63
20 10 0.37
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (20 bp):
ATATATTTTAATGTAAAATA
Found at i:8178453 original size:21 final size:19
Alignment explanation
Indices: 8178428--8178471 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 19
8178418 GAAAATATAA
8178428 AAAAACCATG-TTTTTAATCTT
1 AAAAA-CATGATTTTT-AT-TT
8178449 AAAAACATGATTTTTATTT
1 AAAAACATGATTTTTATTT
8178468 AAAA
1 AAAA
8178472 TATATTAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.27
20 6 0.27
21 10 0.45
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (19 bp):
AAAAACATGATTTTTATTT
Found at i:8180691 original size:17 final size:17
Alignment explanation
Indices: 8180669--8180701 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8180659 AATTTGTTCA
*
8180669 AAAAAAATATGAAATAT
1 AAAAAAATATAAAATAT
8180686 AAAAAAATATAAAATA
1 AAAAAAATATAAAATA
8180702 CGAAATACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (17 bp):
AAAAAAATATAAAATAT
Found at i:8180699 original size:24 final size:24
Alignment explanation
Indices: 8180672--8180723 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
8180662 TTGTTCAAAA
*
8180672 AAAATATGAAATATAAAAAAATA-T
1 AAAATACGAAATA-AAAAAAATACT
*
8180696 AAAATACGAAATACAAAAAATACT
1 AAAATACGAAATAAAAAAAATACT
8180720 AAAA
1 AAAA
8180724 ATAATACAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 8 0.32
24 17 0.68
ACGTcount: A:0.71, C:0.06, G:0.04, T:0.19
Consensus pattern (24 bp):
AAAATACGAAATAAAAAAAATACT
Found at i:8180837 original size:23 final size:23
Alignment explanation
Indices: 8180797--8180843 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
8180787 GGCACCATGC
*
8180797 CACCATGCCCTACACCCATCCCT
1 CACCATGCCCTACACCCACCCCT
* * *
8180820 CACCATGTCGTACCCCCACCCCT
1 CACCATGCCCTACACCCACCCCT
8180843 C
1 C
8180844 TAATCACCTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.19, C:0.57, G:0.06, T:0.17
Consensus pattern (23 bp):
CACCATGCCCTACACCCACCCCT
Found at i:8181914 original size:17 final size:16
Alignment explanation
Indices: 8181883--8181938 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
8181873 AAATAAAATT
* *
8181883 TAAAAACAAAATAATA
1 TAAAAATAAAGTAATA
*
8181899 TAAAAATAAATTTAATAA
1 TAAAAATAAA-GTAAT-A
*
8181917 TAATAATAAAGTAATA
1 TAAAAATAAAGTAATA
8181933 -AAAAAT
1 TAAAAAT
8181939 GTAGGAAAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
15 5 0.15
16 10 0.30
17 8 0.24
18 10 0.30
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.27
Consensus pattern (16 bp):
TAAAAATAAAGTAATA
Found at i:8184002 original size:7 final size:7
Alignment explanation
Indices: 8183992--8184021 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
8183982 TGTCTTTTTT
8183992 TTTTCCA
1 TTTTCCA
8183999 TTTTCCA
1 TTTTCCA
8184006 TTTTCCA
1 TTTTCCA
8184013 TTTT-CA
1 TTTTCCA
8184019 TTT
1 TTT
8184022 ATTATTCTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.22
7 18 0.78
ACGTcount: A:0.13, C:0.23, G:0.00, T:0.63
Consensus pattern (7 bp):
TTTTCCA
Found at i:8185268 original size:18 final size:17
Alignment explanation
Indices: 8185245--8185279 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8185235 ATAATAACAA
*
8185245 TAACAATATAAACAATAT
1 TAACAACATAAA-AATAT
8185263 TAACAACATAAAAATAT
1 TAACAACATAAAAATAT
8185280 CATCAACAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.63, C:0.11, G:0.00, T:0.26
Consensus pattern (17 bp):
TAACAACATAAAAATAT
Found at i:8185286 original size:17 final size:18
Alignment explanation
Indices: 8185246--8185287 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
8185236 TAATAACAAT
* *
8185246 AACAATATAAACAATATT
1 AACAACATAAACAATATC
8185264 AACAACATAAA-AATATC
1 AACAACATAAACAATATC
*
8185281 ATCAACA
1 AACAACA
8185288 ACAATAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.62, C:0.17, G:0.00, T:0.21
Consensus pattern (18 bp):
AACAACATAAACAATATC
Found at i:8186789 original size:2 final size:2
Alignment explanation
Indices: 8186773--8186810 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
8186763 TGCAACTTGA
* *
8186773 AT AT TT AT AT A- AT AT AT AT AT AT AT AT AT AT AT GT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8186811 CATAATACGG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8191413 original size:15 final size:16
Alignment explanation
Indices: 8191395--8191434 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
8191385 CCTAAGTAAA
8191395 AAATAAATAATG-AAT
1 AAATAAATAATGAAAT
8191410 AAATAAAT-ATGAAAT
1 AAATAAATAATGAAAT
*
8191425 AAACAAATAA
1 AAATAAATAA
8191435 GTAAAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 3 0.14
15 18 0.82
16 1 0.05
ACGTcount: A:0.70, C:0.03, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAATAATGAAAT
Found at i:8192105 original size:19 final size:19
Alignment explanation
Indices: 8192064--8192105 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
8192054 GGTTTTTAAA
8192064 ACCCAATAATTTAAATCAAG
1 ACCCAATAATTTAAA-CAAG
8192084 ACCCAATAATTTCAAA-AAG
1 ACCCAATAATTT-AAACAAG
8192103 ACC
1 ACC
8192106 TCAAACAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.29
20 12 0.57
21 3 0.14
ACGTcount: A:0.50, C:0.24, G:0.05, T:0.21
Consensus pattern (19 bp):
ACCCAATAATTTAAACAAG
Found at i:8192457 original size:42 final size:41
Alignment explanation
Indices: 8192322--8192478 Score: 131
Period size: 42 Copynumber: 3.8 Consensus size: 41
8192312 CCCCTAATAG
* **
8192322 AGGCTTTAAAACTTTGAAAATTTTAAAA-G-TTCCTCTCATTAA
1 AGGCTTTGAAACTTTGAAAA-TTTAAAATGCTT-C-CTCACCAA
* * * * * *
8192364 AGGTTTTGAAATTTTGAAAA-TAAAAAAGCTCTTCTCACCAG
1 AGGCTTTGAAACTTTGAAAATTTAAAATGCT-TCCTCACCAA
* *
8192405 AGGCTATGAAACTTTGAAAATGTAAAATGCTTCCATCACCAA
1 AGGCTTTGAAACTTTGAAAATTTAAAATGCTTCC-TCACCAA
*
8192447 AGGCTTTGAAACTTTAAAAAATTTAAAATGCT
1 AGGCTTTGAAACTTT-GAAAATTTAAAATGCT
8192479 GCTCGAAATA
Statistics
Matches: 90, Mismatches: 19, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
40 5 0.06
41 25 0.28
42 45 0.50
43 15 0.17
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.32
Consensus pattern (41 bp):
AGGCTTTGAAACTTTGAAAATTTAAAATGCTTCCTCACCAA
Found at i:8192774 original size:22 final size:22
Alignment explanation
Indices: 8192741--8192783 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
8192731 TCAAATTGAA
*
8192741 AAGTTCTTAAAATTTGTATCAT
1 AAGTTCTTAAAATTTGCATCAT
8192763 AAGTT-TTCAAAATTTGCATCA
1 AAGTTCTT-AAAATTTGCATCA
8192784 AAGATTAGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.37, C:0.12, G:0.09, T:0.42
Consensus pattern (22 bp):
AAGTTCTTAAAATTTGCATCAT
Found at i:8192808 original size:65 final size:65
Alignment explanation
Indices: 8192687--8192812 Score: 162
Period size: 65 Copynumber: 1.9 Consensus size: 65
8192677 TCGCATCGAG
* * ** * **
8192687 ATTTGTATCATAAGTCTTCGAGATTTGCATTGAAGATTTGAGATTCAAATTGAAAAGTTCTTAAA
1 ATTTGTATCATAAGTCTTCAAAATTTGCATCAAAGATTAGAGATTCAAATCAAAAAGTTCTTAAA
* * *
8192752 ATTTGTATCATAAGTTTTCAAAATTTGCATCAAAGATTAGAGATTTACATCAAAAAGTTCT
1 ATTTGTATCATAAGTCTTCAAAATTTGCATCAAAGATTAGAGATTCAAATCAAAAAGTTCT
8192813 CAATAGTTTT
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
65 51 1.00
ACGTcount: A:0.37, C:0.10, G:0.14, T:0.38
Consensus pattern (65 bp):
ATTTGTATCATAAGTCTTCAAAATTTGCATCAAAGATTAGAGATTCAAATCAAAAAGTTCTTAAA
Found at i:8192876 original size:22 final size:22
Alignment explanation
Indices: 8192851--8192900 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
8192841 AATCTTACAT
* *
8192851 ATCATGCTCTG-ATGTCTTATAG
1 ATCATGCTC-GAAAGTCTTATAA
*
8192873 ATCATACTCGAAAGTCTTATAA
1 ATCATGCTCGAAAGTCTTATAA
8192895 ATCATG
1 ATCATG
8192901 TTTGAAGGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 1 0.04
22 22 0.96
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (22 bp):
ATCATGCTCGAAAGTCTTATAA
Found at i:8193574 original size:25 final size:25
Alignment explanation
Indices: 8193524--8193574 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
8193514 TTTCCAAATA
* * *
8193524 ATGCAAATGCATGGTTCTAACTATG
1 ATGCAAATGCATGATTCAAACAATG
8193549 ATGCAAATGCAAT-ATTCAAACAATG
1 ATGCAAATGC-ATGATTCAAACAATG
8193574 A
1 A
8193575 ATTAGATGCC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (25 bp):
ATGCAAATGCATGATTCAAACAATG
Found at i:8193694 original size:71 final size:70
Alignment explanation
Indices: 8193517--8193695 Score: 211
Period size: 70 Copynumber: 2.5 Consensus size: 70
8193507 TAAATGCTTT
* * *
8193517 CCAAATAATGCAAATGCATGGTTCTAA-CTATGATGCAAATGCAATATTCAAACAATGAATTAGA
1 CCAAATGATGCAAATGCATGG-TCTAATCAATGATGCAAATGCAATATTCAAACAATGAATTAAA
8193581 TGCCCA
65 TGCCCA
* *
8193587 CCAAATGATGCAAATGCATGG-CATGAAT-AATGATGCAAATGCAATATTCAAAATAATGATTTA
1 CCAAATGATGCAAATGCATGGTC-T-AATCAATGATGCAAATGCAATATTC-AAACAATGAATTA
* *
8193650 AATTCTCA
63 AATGCCCA
* * *
8193658 CCAAATGTTGTAAATGCATGGTCTAATCAATTATGCAA
1 CCAAATGATGCAAATGCATGGTCTAATCAATGATGCAA
8193696 TATACAAATT
Statistics
Matches: 93, Mismatches: 10, Indels: 11
0.82 0.09 0.10
Matches are distributed among these distances:
68 1 0.01
69 1 0.01
70 45 0.48
71 45 0.48
72 1 0.01
ACGTcount: A:0.41, C:0.16, G:0.15, T:0.28
Consensus pattern (70 bp):
CCAAATGATGCAAATGCATGGTCTAATCAATGATGCAAATGCAATATTCAAACAATGAATTAAAT
GCCCA
Found at i:8194334 original size:17 final size:17
Alignment explanation
Indices: 8194312--8194349 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
8194302 GACTAGACTC
8194312 AAGATTTCTATAAAAGA
1 AAGATTTCTATAAAAGA
8194329 AAGATTTCTATAAAAGA
1 AAGATTTCTATAAAAGA
8194346 AAGA
1 AAGA
8194350 AAGGCTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.55, C:0.05, G:0.13, T:0.26
Consensus pattern (17 bp):
AAGATTTCTATAAAAGA
Found at i:8194857 original size:18 final size:20
Alignment explanation
Indices: 8194818--8194862 Score: 58
Period size: 18 Copynumber: 2.3 Consensus size: 20
8194808 CTTTGTTTTT
8194818 TTTTTCTTTCATTTCATTTCA
1 TTTTTCTTT-ATTTCATTTCA
8194839 TTTTTCTTT-TTTC-TTTCA
1 TTTTTCTTTATTTCATTTCA
*
8194857 TGTTTC
1 TTTTTC
8194863 CATTCTAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 10 0.43
19 4 0.17
21 9 0.39
ACGTcount: A:0.09, C:0.18, G:0.02, T:0.71
Consensus pattern (20 bp):
TTTTTCTTTATTTCATTTCA
Found at i:8195237 original size:12 final size:12
Alignment explanation
Indices: 8195205--8195237 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
8195195 TTACAATTAA
8195205 TTTTTTTTTCTT
1 TTTTTTTTTCTT
*
8195217 TTTCTTTTTCTT
1 TTTTTTTTTCTT
8195229 TTTTTTTTT
1 TTTTTTTTT
8195238 TTACAACTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (12 bp):
TTTTTTTTTCTT
Found at i:8195239 original size:6 final size:6
Alignment explanation
Indices: 8195205--8195236 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
8195195 TTACAATTAA
8195205 TTTT-T TTTTCT TTTTCT TTTTCT TTTT-T TTTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTT
8195237 TTTACAACTC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 9 0.35
6 17 0.65
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (6 bp):
TTTTCT
Found at i:8198237 original size:16 final size:16
Alignment explanation
Indices: 8198213--8198243 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8198203 AAGTGATTAA
*
8198213 ATGATAATAACATAGC
1 ATGACAATAACATAGC
8198229 ATGACAATAACATAG
1 ATGACAATAACATAG
8198244 TGATCTTGCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.13, G:0.13, T:0.23
Consensus pattern (16 bp):
ATGACAATAACATAGC
Found at i:8199551 original size:14 final size:14
Alignment explanation
Indices: 8199534--8199587 Score: 65
Period size: 14 Copynumber: 3.7 Consensus size: 14
8199524 TAAAAATCAG
8199534 TAAAATAAAATACA
1 TAAAATAAAATACA
8199548 TAAAATAAAAAATA-A
1 TAAAAT--AAAATACA
*
8199563 GTAAAATAAAATGCA
1 -TAAAATAAAATACA
8199578 TAAAATAAAA
1 TAAAATAAAA
8199588 AAACTAAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
14 21 0.60
15 2 0.06
16 12 0.34
ACGTcount: A:0.72, C:0.04, G:0.04, T:0.20
Consensus pattern (14 bp):
TAAAATAAAATACA
Found at i:8199561 original size:16 final size:16
Alignment explanation
Indices: 8199540--8199589 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
8199530 TCAGTAAAAT
8199540 AAAATACATAAAATAA
1 AAAATACATAAAATAA
8199556 AAAATA-AGTAAAAT--
1 AAAATACA-TAAAATAA
*
8199570 AAAATGCATAAAATAA
1 AAAATACATAAAATAA
8199586 AAAA
1 AAAA
8199590 ACTAAAAATC
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
14 11 0.38
15 2 0.07
16 16 0.55
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.18
Consensus pattern (16 bp):
AAAATACATAAAATAA
Found at i:8199566 original size:30 final size:30
Alignment explanation
Indices: 8199525--8199589 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
8199515 AATAAATAAT
*
8199525 AAAAATCAGTAAAATAAAATACATAAAATA
1 AAAAATAAGTAAAATAAAATACATAAAATA
*
8199555 AAAAATAAGTAAAATAAAATGCATAAAATA
1 AAAAATAAGTAAAATAAAATACATAAAATA
8199585 AAAAA
1 AAAAA
8199590 ACTAAAAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.72, C:0.05, G:0.05, T:0.18
Consensus pattern (30 bp):
AAAAATAAGTAAAATAAAATACATAAAATA
Found at i:8199596 original size:14 final size:14
Alignment explanation
Indices: 8199522--8199589 Score: 64
Period size: 14 Copynumber: 4.6 Consensus size: 14
8199512 CTCAATAAAT
*
8199522 AATAAAAATCAGTAA
1 AATAAAAAACA-TAA
*
8199537 AATAAAATACATAA
1 AATAAAAAACATAA
*
8199551 AATAAAAAATAAGTAA
1 AATAAAAAA-CA-TAA
**
8199567 AATAAAATGCATAA
1 AATAAAAAACATAA
8199581 AATAAAAAA
1 AATAAAAAA
8199590 ACTAAAAATC
Statistics
Matches: 42, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
14 21 0.50
15 11 0.26
16 10 0.24
ACGTcount: A:0.72, C:0.04, G:0.04, T:0.19
Consensus pattern (14 bp):
AATAAAAAACATAA
Found at i:8200052 original size:20 final size:21
Alignment explanation
Indices: 8199998--8200056 Score: 61
Period size: 20 Copynumber: 2.9 Consensus size: 21
8199988 AACCTTCTAG
*
8199998 AACTTC-AATCCAAACTCCAAA
1 AACTTCAAATACAAAC-CCAAA
* *
8200019 AACCT-AAATACAAACCCAGA
1 AACTTCAAATACAAACCCAAA
8200039 AACTTCAAAT-CAAACCCA
1 AACTTCAAATACAAACCCA
8200057 TAAATCCAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 16 0.50
21 16 0.50
ACGTcount: A:0.51, C:0.32, G:0.02, T:0.15
Consensus pattern (21 bp):
AACTTCAAATACAAACCCAAA
Found at i:8200072 original size:20 final size:19
Alignment explanation
Indices: 8200004--8200072 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 19
8199994 CTAGAACTTC
*
8200004 AATCCAAACTCCAAAAACCTA
1 AATCCAAAC-CCAAAATCC-A
* *
8200025 AATACAAACCCAGAAACTTCA
1 AATCCAAACCCA-AAA-TCCA
8200046 AAT-CAAACCCATAAATCCA
1 AATCCAAACCCA-AAATCCA
8200065 AATCCAAA
1 AATCCAAA
8200073 ATTCTTGAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
19 6 0.15
20 18 0.45
21 15 0.38
22 1 0.03
ACGTcount: A:0.54, C:0.30, G:0.01, T:0.14
Consensus pattern (19 bp):
AATCCAAACCCAAAATCCA
Found at i:8201043 original size:55 final size:54
Alignment explanation
Indices: 8200905--8201051 Score: 150
Period size: 55 Copynumber: 2.7 Consensus size: 54
8200895 AAAACTGAGC
* *
8200905 CACACATTAGGGAAATGATCTAGACTAAGTCAAGATCAAATGACTGAGATTGAA
1 CACAAATTAGGGAAATGATCTAGACTGAGTCAAGATCAAATGACTGAGATTGAA
* * * * * * * * *
8200959 CTACAAGTCAGGAAAATGATCTCGGCTGAGTTAAGATTAAATGATTGGGATTGAA
1 C-ACAAATTAGGGAAATGATCTAGACTGAGTCAAGATCAAATGACTGAGATTGAA
* * *
8201014 TCACAAATTAGGGAAATAATCTAAACTGAGCCAAGATC
1 -CACAAATTAGGGAAATGATCTAGACTGAGTCAAGATC
8201052 GAATTATCAA
Statistics
Matches: 70, Mismatches: 21, Indels: 3
0.74 0.22 0.03
Matches are distributed among these distances:
54 1 0.01
55 68 0.97
56 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.21, T:0.24
Consensus pattern (54 bp):
CACAAATTAGGGAAATGATCTAGACTGAGTCAAGATCAAATGACTGAGATTGAA
Found at i:8208519 original size:64 final size:63
Alignment explanation
Indices: 8208451--8208983 Score: 345
Period size: 64 Copynumber: 8.3 Consensus size: 63
8208441 CATTTTTTGT
*
8208451 CAAAAATACCTTGAATAATCCCATCAATAAATTTTTATGAGAGATTATTGAAGGTCTTTTTGAC
1 CAAAAATACCTTCAATAATCCC-TCAATAAATTTTTATGAGAGATTATTGAAGGTCTTTTTGAC
* * * * *
8208515 CAAAAATGCTTTCAATAATCCCCTCCATAAATTTTTATGAGAGATTATTAAATG-CATTTTTGAT
1 CAAAAATACCTTCAATAAT-CCCTCAATAAATTTTTATGAGAGATTATTGAAGGTC-TTTTTG--
*
8208579 AA
62 AC
* * * * * *
8208581 AAAAAACACCTTCAATAATCCTTTC-A-AAA-TTTTATTCAGGGGATTATTGAAGGCCTTTTTGA
1 CAAAAATACCTTCAATAATCC-CTCAATAAATTTTTA-TGA-GAGATTATTGAAGGTCTTTTTGA
8208643 C
63 C
* * * * * * * *
8208644 TAAAAATGCCTTCAATAATTCCCTTAATAAATTTTTATTAGGGATTATTGAATGTATTTTTTGAT
1 CAAAAATACCTTCAATAA-TCCCTCAATAAATTTTTATGAGAGATTATTGAAGGT-CTTTTTGAC
* * * * * *
8208709 CAAAAACACATTCAATAATCCTTC--TCAAATTTTTCTAAG-GATTATTGAAGG-CATTTTTGAG
1 CAAAAATACCTTCAATAATCCCTCAAT-AAATTTTTATGAGAGATTATTGAAGGTC-TTTTTGAC
* * * * * * *
8208770 CAAAAATGCTTTTAATAATCCTCTTAATAAAATTTTATGAGAAATTATTGAAGGCGTTTTTTTG-
1 CAAAAATACCTTCAATAATCC-CTCAATAAATTTTTATGAGAGATTATTGAA-G-GTCTTTTTGA
*
8208834 T
63 C
** * * * * * *
8208835 CAAAAAGGCCTTCAATAATCTCTTC--CAAATTTTT-TCAAAGGATTATTGAA-GACATTTTTTT
1 CAAAAATACCTTCAATAATC-CCTCAATAAATTTTTATGAGA-GATTATTGAAGGTC--TTTTTG
*
8208896 AT
62 AC
* * *
8208898 CAAAAACACCTTCAATAATTCCCTCAATAAATTTTTATGAGAGATTATTGAAGGTATTTTTGGC
1 CAAAAATACCTTCAATAA-TCCCTCAATAAATTTTTATGAGAGATTATTGAAGGTCTTTTTGAC
***
8208962 CAAAAACGTCTTCAATAATCCC
1 CAAAAATACCTTCAATAATCCC
8208984 CTAAGCAACA
Statistics
Matches: 361, Mismatches: 76, Indels: 65
0.72 0.15 0.13
Matches are distributed among these distances:
60 1 0.00
61 24 0.07
62 21 0.06
63 84 0.23
64 109 0.30
65 86 0.24
66 36 0.10
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (63 bp):
CAAAAATACCTTCAATAATCCCTCAATAAATTTTTATGAGAGATTATTGAAGGTCTTTTTGAC
Found at i:8208555 original size:126 final size:126
Alignment explanation
Indices: 8208431--8208983 Score: 515
Period size: 126 Copynumber: 4.3 Consensus size: 126
8208421 TTCAATGAGG
* * * * *
8208431 TTATTTAAGGCATTTTTTGTCAAAAATACCTTGAATAATCCCATCAATAAATTTTTATGAGAGAT
1 TTATTGAAGGCATTTTTTGTCAAAAACACCTTCAATAATCCCTTC--TAAATTTTTATCAGAGAT
* *
8208496 TATTGAAGGTC-TTTTTGACCAAAAATGCTTTCAATAATCCCCTCCATAAATTTTTATGAGAGA
64 TATTGAAGG-CATTTTTGACCAAAAATGCCTTCAATAATCCCCTCAATAAATTTTTATGAGAGA
* * * * * *
8208559 TTATTAAATGCA-TTTTTGATAAAAAAAACACCTTCAATAATCCTTTC-AAAATTTTATTCAGGG
1 TTATTGAAGGCATTTTTTG-T--CAAAAACACCTTCAATAATCCCTTCTAAATTTTTA-TCA-GA
* * * * * *
8208622 GATTATTGAAGGCCTTTTTGACTAAAAATGCCTTCAATAATTCCCTTAATAAATTTTTATTAGGG
61 GATTATTGAAGGCATTTTTGACCAAAAATGCCTTCAATAATCCCCTCAATAAATTTTTATGAGAG
8208687 A
126 A
* * * * *
8208688 TTATTGAATGTATTTTTTGATCAAAAACACATTCAATAAT-CCTTCTCAAATTTTTCTAAG-GAT
1 TTATTGAAGGCATTTTTTG-TCAAAAACACCTTCAATAATCCCTTCT-AAATTTTTATCAGAGAT
* * * * * * *
8208751 TATTGAAGGCATTTTTGAGCAAAAATGCTTTTAATAATCCTCTTAATAAAATTTTATGAGAAA
64 TATTGAAGGCATTTTTGACCAAAAATGCCTTCAATAATCCCCTCAATAAATTTTTATGAGAGA
* ** * * *
8208814 TTATTGAAGGCGTTTTTTTGTCAAAAAGGCCTTCAATAATCTCTTCCAAATTTTT-TCAAAGGAT
1 TTATTGAAGGC-ATTTTTTGTCAAAAACACCTTCAATAATCCCTTCTAAATTTTTATCAGA-GAT
* * * ** *
8208878 TATTGAAGACATTTTTTTATCAAAAACACCTTCAATAATTCCCTCAATAAATTTTTATGAGAGA
64 TATTGAAGGCA-TTTTTGACCAAAAATGCCTTCAATAATCCCCTCAATAAATTTTTATGAGAGA
* * * **
8208942 TTATTGAAGGTATTTTTGGCCAAAAACGTCTTCAATAATCCC
1 TTATTGAAGGCATTTTTTGTCAAAAACACCTTCAATAATCCC
8208984 CTAAGCAACA
Statistics
Matches: 346, Mismatches: 65, Indels: 29
0.79 0.15 0.07
Matches are distributed among these distances:
125 2 0.01
126 89 0.26
127 68 0.20
128 84 0.24
129 75 0.22
130 28 0.08
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.39
Consensus pattern (126 bp):
TTATTGAAGGCATTTTTTGTCAAAAACACCTTCAATAATCCCTTCTAAATTTTTATCAGAGATTA
TTGAAGGCATTTTTGACCAAAAATGCCTTCAATAATCCCCTCAATAAATTTTTATGAGAGA
Found at i:8208641 original size:65 final size:61
Alignment explanation
Indices: 8208557--8208982 Score: 215
Period size: 65 Copynumber: 6.7 Consensus size: 61
8208547 TTTTATGAGA
* *
8208557 GATTATTAAATGCATTTTTGATAAAAAAAACACCTTCAATAATCCTTTCAAAATTTTATTCAGGG
1 GATTATTGAAGGCATTTTTGAT---AAAAACACCTTCAATAATCCTTTCAAAATTTTATTCA-GG
* ** * *
8208622 GATTATTGAAGGCCTTTTTGACTAAAAATGCCTTCAATAATTCCCTTAATAAATTTTTATT-AGG
1 GATTATTGAAGGCATTTTTGA-TAAAAACACCTTCAATAA-TCCTTTCA-AAA-TTTTATTCAGG
* * * *
8208686 GATTATTGAATGTATTTTTTGATCAAAAACACATTCAATAATCCTTCTC-AAA-TTT-TTCTAAG
1 GATTATTGAAGGCA-TTTTTGAT-AAAAACACCTTCAATAATCCTT-TCAAAATTTTATTC-AGG
* ** * * * * *
8208748 GATTATTGAAGGCATTTTTGAGCAAAAATGCTTTTAATAATCCTCTTAATAAAATTTTA-TGAGA
1 GATTATTGAAGGCATTTTTGA-TAAAAACACCTTCAATAATCCT-TT--CAAAATTTTATTCAGG
* * ** * *
8208812 AATTATTGAAGGCGTTTTTTTG-TCAAAAAGGCCTTCAATAAT-CTCTTCCAAATTTT-TTCAAA
1 GATTATTGAAGGC--ATTTTTGAT-AAAAACACCTTCAATAATCCT-TTCAAAATTTTATTC-AG
8208874 G
61 G
* * * *
8208875 GATTATTGAAGACATTTTTTTATCAAAAACACCTTCAATAATTCC-CTCAATAAATTTT-TATGA
1 GATTATTGAAGGCA-TTTTTGAT-AAAAACACCTTCAATAA-TCCTTTC-A-AAATTTTAT-TCA
*
8208938 GA
60 GG
* ** **
8208940 GATTATTGAAGGTATTTTTGGCCAAAAACGTCTTCAATAATCC
1 GATTATTGAAGGCATTTTT-GATAAAAACACCTTCAATAATCC
8208983 CCTAAGCAAC
Statistics
Matches: 276, Mismatches: 56, Indels: 60
0.70 0.14 0.15
Matches are distributed among these distances:
60 2 0.01
61 28 0.10
62 28 0.10
63 52 0.19
64 66 0.24
65 85 0.31
66 15 0.05
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (61 bp):
GATTATTGAAGGCATTTTTGATAAAAACACCTTCAATAATCCTTTCAAAATTTTATTCAGG
Found at i:8209104 original size:106 final size:106
Alignment explanation
Indices: 8208908--8209104 Score: 231
Period size: 106 Copynumber: 1.9 Consensus size: 106
8208898 CAAAAACACC
* * *
8208908 TTCAATAATTCCCTCAATAAATTTTTATGAGAGATTATTGAAGGTATTTTTGGCCAAAAACGTCT
1 TTCAATAATTCCCTCAATAAATTTTTATGAGAGATTATTGAAGGCATTTTTGACCAAAAACGCCT
* *
8208973 TCAATAATCCCCTAAGCAACATTTTTTATATGGATTATTGAA
66 TCAATAATCCCCT-ACCAAAATTTTTTATATGGATTATTGAA
* * * *
8209015 TTCAATAA-TCCCTTCCAA-AAATTTTTGT-ATAGATTATTGAAGGCATTTTTGATCGAAAACGC
1 TTCAATAATTCCC-T-CAATAAATTTTTATGAGAGATTATTGAAGGCATTTTTGACCAAAAACGC
* *
8209077 CTTCAATATTCTCTCT-CCAAAATTTTTT
64 CTTCAATAATC-CCCTACCAAAATTTTTT
8209105 GAAGCCAAAA
Statistics
Matches: 76, Mismatches: 11, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
105 10 0.13
106 42 0.55
107 21 0.28
108 3 0.04
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.40
Consensus pattern (106 bp):
TTCAATAATTCCCTCAATAAATTTTTATGAGAGATTATTGAAGGCATTTTTGACCAAAAACGCCT
TCAATAATCCCCTACCAAAATTTTTTATATGGATTATTGAA
Found at i:8218509 original size:27 final size:26
Alignment explanation
Indices: 8218477--8218539 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 26
8218467 ATAAAATAAG
*
8218477 ATAATATTAT-TTAATCAAATTTTATT
1 ATAATATTATATT-ATCAAATCTTATT
**
8218503 CATAATATTATATTATCTTATCTTATT
1 -ATAATATTATATTATCAAATCTTATT
8218530 ATAATATTAT
1 ATAATATTAT
8218540 GTACCTAATG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 10 0.31
27 20 0.62
28 2 0.06
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (26 bp):
ATAATATTATATTATCAAATCTTATT
Found at i:8220777 original size:27 final size:27
Alignment explanation
Indices: 8220739--8220793 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
8220729 ATACTTTGAA
8220739 GACAACGGGATTCATAGGAAAGCTAAT
1 GACAACGGGATTCATAGGAAAGCTAAT
* *
8220766 GACAATGGGATTCGTAGGAAAGCTAAT
1 GACAACGGGATTCATAGGAAAGCTAAT
8220793 G
1 G
8220794 GGATTTACCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.38, C:0.13, G:0.29, T:0.20
Consensus pattern (27 bp):
GACAACGGGATTCATAGGAAAGCTAAT
Found at i:8222483 original size:25 final size:25
Alignment explanation
Indices: 8222436--8222483 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
8222426 TTTATATTGT
* **
8222436 AAAAATAATATATATTTACTTAAAG
1 AAAAATAATATAAAACTACTTAAAG
*
8222461 AAAAATAATATAAAACTATTTAA
1 AAAAATAATATAAAACTACTTAA
8222484 TCTCATTTAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.33
Consensus pattern (25 bp):
AAAAATAATATAAAACTACTTAAAG
Found at i:8223463 original size:2 final size:2
Alignment explanation
Indices: 8223458--8223490 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
8223448 AATAAGTGTG
8223458 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8223491 AAATATAACA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:8230953 original size:22 final size:22
Alignment explanation
Indices: 8230918--8230959 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
8230908 GTCCAACTAT
** *
8230918 TATAGGTATGCTTGGATAAACA
1 TATAGGTACCCTTGAATAAACA
8230940 TATAGGTACCCTTGAATAAA
1 TATAGGTACCCTTGAATAAA
8230960 TGACATTGCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (22 bp):
TATAGGTACCCTTGAATAAACA
Found at i:8235362 original size:13 final size:13
Alignment explanation
Indices: 8235325--8235368 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
8235315 CGTTTGTAAT
8235325 TTTTTAGATTTTTA
1 TTTTT-GATTTTTA
* *
8235339 TTGTTGGTTTTTA
1 TTTTTGATTTTTA
*
8235352 TTTTTTATTTTTA
1 TTTTTGATTTTTA
8235365 TTTT
1 TTTT
8235369 AAAATAAATA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
13 21 0.84
14 4 0.16
ACGTcount: A:0.14, C:0.00, G:0.09, T:0.77
Consensus pattern (13 bp):
TTTTTGATTTTTA
Found at i:8237567 original size:27 final size:26
Alignment explanation
Indices: 8237485--8237567 Score: 61
Period size: 27 Copynumber: 3.2 Consensus size: 26
8237475 TTTTATTTTA
* *
8237485 TAATCCATTTTAAAAATTAAAT-ATCTT
1 TAAT-CATTTTAATAATAAAATAAT-TT
8237512 TAAT-A--TTAAT-ATAAAATGATATTT
1 TAATCATTTTAATAATAAAAT-A-ATTT
8237536 T-ATCATTTTAATAATAAAATAATTT
1 TAATCATTTTAATAATAAAATAATTT
8237561 ATAATCA
1 -TAATCA
8237568 AAAGGTCATA
Statistics
Matches: 45, Mismatches: 2, Indels: 18
0.69 0.03 0.28
Matches are distributed among these distances:
22 6 0.13
23 6 0.13
24 4 0.09
25 7 0.16
26 7 0.16
27 15 0.33
ACGTcount: A:0.48, C:0.06, G:0.01, T:0.45
Consensus pattern (26 bp):
TAATCATTTTAATAATAAAATAATTT
Found at i:8238831 original size:21 final size:22
Alignment explanation
Indices: 8238807--8238850 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
8238797 GATCAAATAT
8238807 ATAAAATTTAATAAATTT-TTA
1 ATAAAATTTAATAAATTTATTA
* * *
8238828 ATAAATTTTGATATATTTATTA
1 ATAAAATTTAATAAATTTATTA
8238850 A
1 A
8238851 ATAGAAAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (22 bp):
ATAAAATTTAATAAATTTATTA
Found at i:8239010 original size:13 final size:13
Alignment explanation
Indices: 8238994--8239027 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
8238984 TTATTGGTTT
8238994 AAATTTTTTATTA
1 AAATTTTTTATTA
8239007 AAATTTTTTATTA
1 AAATTTTTTATTA
8239020 AAATTTTT
1 AAATTTTT
8239028 ATTTACTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
AAATTTTTTATTA
Found at i:8239013 original size:12 final size:12
Alignment explanation
Indices: 8238992--8239030 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
8238982 ATTTATTGGT
*
8238992 TTAAATTTTTTA
1 TTAAAATTTTTA
8239004 TTAAAATTTTTTA
1 TTAAAA-TTTTTA
8239017 TTAAAATTTTTA
1 TTAAAATTTTTA
8239029 TT
1 TT
8239031 TACTTATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 13 0.52
13 12 0.48
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
TTAAAATTTTTA
Found at i:8239880 original size:118 final size:118
Alignment explanation
Indices: 8239672--8239907 Score: 454
Period size: 118 Copynumber: 2.0 Consensus size: 118
8239662 GTTATTTGTT
8239672 CTCTTGGTCAGTTAGTTCGATTATTTCCGACATTAAATCAGTTATGTCAGTTTTGAAAATTAATC
1 CTCTTGGTCAGTTAGTTCGATTATTTCCGACATTAAATCAGTTATGTCAGTTTTGAAAATTAATC
*
8239737 GATCGAAAAAATCGATCAAATCGTTTGCTCTATCTTAAACTTAGACATAATAC
66 AATCGAAAAAATCGATCAAATCGTTTGCTCTATCTTAAACTTAGACATAATAC
*
8239790 CTCTTGGTCAGTTGGTTCGATTATTTCCGACATTAAATCAGTTATGTCAGTTTTGAAAATTAATC
1 CTCTTGGTCAGTTAGTTCGATTATTTCCGACATTAAATCAGTTATGTCAGTTTTGAAAATTAATC
8239855 AATCGAAAAAATCGATCAAATCGTTTGCTCTATCTTAAACTTAGACATAATAC
66 AATCGAAAAAATCGATCAAATCGTTTGCTCTATCTTAAACTTAGACATAATAC
8239908 TTATTTTCAT
Statistics
Matches: 116, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
118 116 1.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (118 bp):
CTCTTGGTCAGTTAGTTCGATTATTTCCGACATTAAATCAGTTATGTCAGTTTTGAAAATTAATC
AATCGAAAAAATCGATCAAATCGTTTGCTCTATCTTAAACTTAGACATAATAC
Found at i:8240348 original size:16 final size:17
Alignment explanation
Indices: 8240321--8240365 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
8240311 AGGAAGGACG
*
8240321 CTACCAAAAAAAAAAAA
1 CTACCAAAAAAAATAAA
8240338 CTACCAAAAAAAATAAA
1 CTACCAAAAAAAATAAA
*
8240355 -TAACAAAAAAA
1 CTACCAAAAAAA
8240366 CACAGTCCTC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
16 10 0.38
17 16 0.62
ACGTcount: A:0.76, C:0.16, G:0.00, T:0.09
Consensus pattern (17 bp):
CTACCAAAAAAAATAAA
Found at i:8241047 original size:19 final size:18
Alignment explanation
Indices: 8241007--8241056 Score: 50
Period size: 19 Copynumber: 2.8 Consensus size: 18
8240997 GTAAAAATTT
*
8241007 TTTTTTTTA-ATTTTCTA
1 TTTTTTTTATATTTACTA
*
8241024 ATTTTTTTATATATTACTA
1 TTTTTTTTATAT-TTACTA
*
8241043 TTTTTGTTAT-TTTA
1 TTTTTTTTATATTTA
8241057 AGTTTTTTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
17 11 0.41
18 3 0.11
19 13 0.48
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.72
Consensus pattern (18 bp):
TTTTTTTTATATTTACTA
Found at i:8241376 original size:17 final size:19
Alignment explanation
Indices: 8241337--8241386 Score: 59
Period size: 17 Copynumber: 2.7 Consensus size: 19
8241327 TGATAACAAG
*
8241337 TTTTCATAAAAAAAGAAC-
1 TTTTTATAAAAAAAGAACA
* *
8241355 CTTTTA-AAAAAAAGAATA
1 TTTTTATAAAAAAAGAACA
8241373 TTTTTATAAAAAAA
1 TTTTTATAAAAAAA
8241387 TTTATGTTTC
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 10 0.38
18 9 0.35
19 7 0.27
ACGTcount: A:0.58, C:0.06, G:0.04, T:0.32
Consensus pattern (19 bp):
TTTTTATAAAAAAAGAACA
Found at i:8241570 original size:30 final size:30
Alignment explanation
Indices: 8241494--8241568 Score: 132
Period size: 30 Copynumber: 2.5 Consensus size: 30
8241484 TTTCTAAAAC
*
8241494 CCCTAAAATCCAAAATCCTTTAAATCCAAA
1 CCCTAAAATCCAAAATCCCTTAAATCCAAA
8241524 CCCTAAAATCCAAAATCCCTTAAATCCAAA
1 CCCTAAAATCCAAAATCCCTTAAATCCAAA
8241554 CCCTTAAAATCCAAA
1 CCC-TAAAATCCAAA
8241569 TCTTCAAAAT
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
30 32 0.74
31 11 0.26
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.21
Consensus pattern (30 bp):
CCCTAAAATCCAAAATCCCTTAAATCCAAA
Found at i:8241579 original size:15 final size:15
Alignment explanation
Indices: 8241490--8241568 Score: 90
Period size: 16 Copynumber: 5.2 Consensus size: 15
8241480 GCATTTTCTA
*
8241490 AAACCCCTAAAATCC
1 AAACCCTTAAAATCC
* *
8241505 AAAATCCTTTAAATCC
1 -AAACCCTTAAAATCC
8241521 AAACCC-TAAAATCC
1 AAACCCTTAAAATCC
8241535 AAAATCCCTT-AAATCC
1 -AAA-CCCTTAAAATCC
8241551 AAACCCTTAAAATCC
1 AAACCCTTAAAATCC
8241566 AAA
1 AAA
8241569 TCTTCAAAAT
Statistics
Matches: 54, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
14 12 0.22
15 20 0.37
16 21 0.39
17 1 0.02
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.20
Consensus pattern (15 bp):
AAACCCTTAAAATCC
Found at i:8252977 original size:16 final size:16
Alignment explanation
Indices: 8252956--8253001 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
8252946 ATATTTTGCT
8252956 TAAAAAAATAAGAAAAA
1 TAAAAAAA-AAGAAAAA
8252973 TAAAAAAAAAGAAAAA
1 TAAAAAAAAAGAAAAA
* *
8252989 -AATAAGAAAGAAA
1 TAAAAAAAAAGAAA
8253002 GTGATTCAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
15 11 0.41
16 8 0.30
17 8 0.30
ACGTcount: A:0.83, C:0.00, G:0.09, T:0.09
Consensus pattern (16 bp):
TAAAAAAAAAGAAAAA
Found at i:8252989 original size:18 final size:19
Alignment explanation
Indices: 8252957--8252993 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
8252947 TATTTTGCTT
*
8252957 AAAAAAATAAGAAAAATAA
1 AAAAAAAGAAGAAAAATAA
8252976 AAAAAAAGAA-AAAAATAA
1 AAAAAAAGAAGAAAAATAA
8252994 GAAAGAAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.86, C:0.00, G:0.05, T:0.08
Consensus pattern (19 bp):
AAAAAAAGAAGAAAAATAA
Found at i:8254223 original size:104 final size:108
Alignment explanation
Indices: 8254043--8254325 Score: 371
Period size: 104 Copynumber: 2.6 Consensus size: 108
8254033 TATTTTCCTA
* * * * * *
8254043 ACTTGCGGTTCAATCCC-GATCATCGTTAATCTTTGATTTGTGGTTTAATCCCGATCATTCTTAT
1 ACTTGCGGTTCAGTCCCAG-TTATCTTTAATCTTTGACTCGTGGTTTAATCCTGATCATTCTTAT
*
8254107 AGCTTTTTGACTTACGGTTTAATCCTAGTC-GCTT-TTT-TTT-
65 AACTTTTTGACTTACGGTTTAATCCTAGTCAGCTTATTTCTTTG
*
8254147 ACTTGCGGTTCAGTCCCAGTTATCTTTAATCTATGACTCGTGGTTTAATCCTGATCATTCTTATA
1 ACTTGCGGTTCAGTCCCAGTTATCTTTAATCTTTGACTCGTGGTTTAATCCTGATCATTCTTATA
**
8254212 ACTTTTTGACTTACGGTTTAATCCTAGTCATTTTTATTTCTTTG
66 ACTTTTTGACTTACGGTTTAATCCTAGTCA-GCTTATTTCTTTG
** * *
8254256 ACTTATGGTTCAGTCTCAGTTATCTTTAATCTTTGACTCGTAGTTTAAT-CTCGATCATTCTTAT
1 ACTTGCGGTTCAGTCCCAGTTATCTTTAATCTTTGACTCGTGGTTTAATCCT-GATCATTCTTAT
8254320 AACTTT
65 AACTTT
8254326 GACTCATGAT
Statistics
Matches: 157, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
104 84 0.54
105 1 0.01
106 2 0.01
107 3 0.02
108 5 0.03
109 62 0.39
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.47
Consensus pattern (108 bp):
ACTTGCGGTTCAGTCCCAGTTATCTTTAATCTTTGACTCGTGGTTTAATCCTGATCATTCTTATA
ACTTTTTGACTTACGGTTTAATCCTAGTCAGCTTATTTCTTTG
Found at i:8254339 original size:36 final size:36
Alignment explanation
Indices: 8254278--8254361 Score: 109
Period size: 36 Copynumber: 2.3 Consensus size: 36
8254268 GTCTCAGTTA
* *
8254278 TCTT-TAATCTTTGACTCGTAGTTTAATCTCGATCAT
1 TCTTATAA-CTTTGACTCATAGTTTAATCCCGATCAT
8254314 TCTTATAACTTTGACTCAT-GATTTAATCCCGATCAT
1 TCTTATAACTTTGACTCATAG-TTTAATCCCGATCAT
*
8254350 TCTTATAGCTTT
1 TCTTATAACTTT
8254362 TCGACTTACG
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
35 1 0.02
36 39 0.91
37 3 0.07
ACGTcount: A:0.24, C:0.20, G:0.10, T:0.46
Consensus pattern (36 bp):
TCTTATAACTTTGACTCATAGTTTAATCCCGATCAT
Found at i:8254368 original size:145 final size:145
Alignment explanation
Indices: 8254180--8254489 Score: 406
Period size: 145 Copynumber: 2.1 Consensus size: 145
8254170 CTTTAATCTA
* * * * * *
8254180 TGACTCGTGGTTTAATCCTGATCATTCTTATAACTTTTTGACTTACGGTTTAATCCTAGTCATTT
1 TGACTCATGATTTAATCCCGATCATTCTTATAACTTTTCGACTTACGATTTAATCCTAGTCACTT
* * *
8254245 TTATTTCTTTGACTTATGGTTCAGT-CTCAGTTATCTTTAATCTTTGACTCGTAGTTTAATCTCG
66 TTATTTCTCTGACTTACGATTCAGTCCT-AGTTATCTTTAATCTTTGACTCGTAGTTTAATCTCG
8254309 ATCATTCTTATAACTT
130 ATCATTCTTATAACTT
* **
8254325 TGACTCATGATTTAATCCCGATCATTCTTATAGCTTTTCGACTTACGATTTAATGTTAGTCACTT
1 TGACTCATGATTTAATCCCGATCATTCTTATAACTTTTCGACTTACGATTTAATCCTAGTCACTT
* * * *
8254390 TTATTTCTCTGACTTGCGATTTAGTCCTAGTTATCTTTAATCTTTGACTCGTGGTTTAATCTTGA
66 TTATTTCTCTGACTTACGATTCAGTCCTAGTTATCTTTAATCTTTGACTCGTAGTTTAATCTCGA
* *
8254455 TCATTTTTATAATTT
131 TCATTCTTATAACTT
* * *
8254470 TCGAATTACGATTTAATCCC
1 T-GACTCATGATTTAATCCC
8254490 AGTCTCCTTA
Statistics
Matches: 142, Mismatches: 21, Indels: 3
0.86 0.13 0.02
Matches are distributed among these distances:
145 125 0.88
146 17 0.12
ACGTcount: A:0.22, C:0.18, G:0.12, T:0.47
Consensus pattern (145 bp):
TGACTCATGATTTAATCCCGATCATTCTTATAACTTTTCGACTTACGATTTAATCCTAGTCACTT
TTATTTCTCTGACTTACGATTCAGTCCTAGTTATCTTTAATCTTTGACTCGTAGTTTAATCTCGA
TCATTCTTATAACTT
Found at i:8254369 original size:109 final size:108
Alignment explanation
Indices: 8254085--8254361 Score: 284
Period size: 109 Copynumber: 2.6 Consensus size: 108
8254075 TTGATTTGTG
* * * * * *
8254085 GTTTAATCCCGATCATTCTTATAGCTTTTTGACTTACGGTTTAATCCTAGTCGCTT-TT-T---T
1 GTTTAATCCTGATCATTCTTATAAC-TTTTGACTCACGATTTAATCCGAGTC-ATTCTTATAGCT
** *
8254145 TT-ACTTGCGGTTCAGTCCCAGTTATCTTTAATCTATGACTCGTG
64 TTGACTTATGGTTCAGTCCCAGTTATCTTTAATCTATGACTCGTA
* * * * **
8254189 GTTTAATCCTGATCATTCTTATAACTTTTTGACTTACGGTTTAATCCTAGTCATTTTTATTTCTT
1 GTTTAATCCTGATCATTCTTATAAC-TTTTGACTCACGATTTAATCCGAGTCATTCTTATAGCTT
* *
8254254 TGACTTATGGTTCAGTCTCAGTTATCTTTAATCTTTGACTCGTA
65 TGACTTATGGTTCAGTCCCAGTTATCTTTAATCTATGACTCGTA
*
8254298 GTTTAAT-CTCGATCATTCTTATAAC-TTTGACTCATGATTTAATCCCGA-TCATTCTTATAGCT
1 GTTTAATCCT-GATCATTCTTATAACTTTTGACTCACGATTTAAT-CCGAGTCATTCTTATAGCT
8254360 TT
64 TT
8254362 TCGACTTACG
Statistics
Matches: 150, Mismatches: 15, Indels: 13
0.84 0.08 0.07
Matches are distributed among these distances:
103 2 0.01
104 52 0.35
105 1 0.01
107 28 0.19
108 8 0.05
109 59 0.39
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.47
Consensus pattern (108 bp):
GTTTAATCCTGATCATTCTTATAACTTTTGACTCACGATTTAATCCGAGTCATTCTTATAGCTTT
GACTTATGGTTCAGTCCCAGTTATCTTTAATCTATGACTCGTA
Found at i:8254809 original size:171 final size:168
Alignment explanation
Indices: 8254550--8254872 Score: 414
Period size: 171 Copynumber: 1.9 Consensus size: 168
8254540 GATTCACGAT
* * * * * *
8254550 TCAATCTCGATCTCTTTAATTCAAAATCGTAGTTTAATCTCGATTGTTATTATCTTTTGGCTCGT
1 TCAATCTCGATCTCTTTAATTCAAAATCGCAGTTTAATCTCAATTGTTATTATCCTCTGACTAGT
* * * * *
8254615 GATCTAATCACGGTTTTCTTATTTTCGGACTTGTGATTCAATCCAAGTTAACATCATTTTTTGAT
66 GATCTAATCACGGTCTCCTTATTTTCGGACTTATGATTCAATCCAAGTT-A-A-CATTCTTCGAT
*
8254680 TCGCGGTTTAATCTCGATCTTTTTATTCTCTGATTTATGGC
128 TCGCGGTTCAATCTCGATCTTTTTATTCTCTGATTTATGGC
* *
8254721 TCAATCTCGATCTCTTTAATTCAAAGTCGCAGTTTAATCTCAATTGTTGTTATCCTCTGACTAGT
1 TCAATCTCGATCTCTTTAATTCAAAATCGCAGTTTAATCTCAATTGTTATTATCCTCTGACTAGT
* * ** * *
8254786 GGTTTAATC-CTGGTCTCCTTATTTTCTTATTTATGATTCAATCCAAGTTAACGTTCTTCGATTC
66 GATCTAATCAC-GGTCTCCTTATTTTCGGACTTATGATTCAATCCAAGTTAACATTCTTCGATTC
*
8254850 GTGGTTCAATCTCGATCTTTTTA
130 GCGGTTCAATCTCGATCTTTTTA
8254873 AGTCAAAATC
Statistics
Matches: 130, Mismatches: 21, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
168 31 0.24
169 1 0.01
170 2 0.02
171 96 0.74
ACGTcount: A:0.22, C:0.19, G:0.14, T:0.46
Consensus pattern (168 bp):
TCAATCTCGATCTCTTTAATTCAAAATCGCAGTTTAATCTCAATTGTTATTATCCTCTGACTAGT
GATCTAATCACGGTCTCCTTATTTTCGGACTTATGATTCAATCCAAGTTAACATTCTTCGATTCG
CGGTTCAATCTCGATCTTTTTATTCTCTGATTTATGGC
Found at i:8254891 original size:134 final size:134
Alignment explanation
Indices: 8254721--8254968 Score: 311
Period size: 134 Copynumber: 1.9 Consensus size: 134
8254711 GATTTATGGC
* * * *
8254721 TCAATCTCGATCTCTTTAATTCAAAGTCGCAGTTTAATCTCAATTGTTGTTATCCTCTGACTAGT
1 TCAATCTCGATCTCTTTAAGTCAAAATCGCAATTTAACCTCAATTGTTGTTATCCTCTGACTAGT
* ** * *
8254786 GGTTTAATC-CTGGTCTCCTTATTTTCTT-ATTTATGATTCAATCCAAGTTAACGTTCTTCGATT
66 GATTTAATCTC-AATCTCCTCATTTT-TTGACTTATGATTCAATCCAAGTTAACGTTCTTCGATT
8254849 CGTGGT
129 CGTGGT
* ** * * * *
8254855 TCAATCTCGATCTTTTTAAGTCAAAATCTTAATTTAACCTCGATTGTTGTTATCTTTTGACTCGT
1 TCAATCTCGATCTCTTTAAGTCAAAATCGCAATTTAACCTCAATTGTTGTTATCCTCTGACTAGT
*
8254920 GATTTAATCTCAATCTCCTCATTTTTTGACTTGTGATTCAATCCAAGTT
66 GATTTAATCTCAATCTCCTCATTTTTTGACTTATGATTCAATCCAAGTT
8254969 CAATCCTGTT
Statistics
Matches: 95, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
133 2 0.02
134 92 0.97
135 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.12, T:0.45
Consensus pattern (134 bp):
TCAATCTCGATCTCTTTAAGTCAAAATCGCAATTTAACCTCAATTGTTGTTATCCTCTGACTAGT
GATTTAATCTCAATCTCCTCATTTTTTGACTTATGATTCAATCCAAGTTAACGTTCTTCGATTCG
TGGT
Found at i:8255339 original size:17 final size:18
Alignment explanation
Indices: 8255319--8255353 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
8255309 TAAAATTGGT
8255319 TTAATTAA-AATTAAAAA
1 TTAATTAATAATTAAAAA
*
8255336 TTAATTAATTATTAAAAA
1 TTAATTAATAATTAAAAA
8255354 AAATAAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
TTAATTAATAATTAAAAA
Found at i:8255664 original size:12 final size:11
Alignment explanation
Indices: 8255649--8255684 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
8255639 AAAGACACTG
8255649 CAAAAAAAACTA
1 CAAAAAAAAC-A
8255661 CAAAAAAAACA
1 CAAAAAAAACA
*
8255672 AAAAAAAAACA
1 CAAAAAAAACA
8255683 CA
1 CA
8255685 GTCCTCCCCG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.81, C:0.17, G:0.00, T:0.03
Consensus pattern (11 bp):
CAAAAAAAACA
Found at i:8256807 original size:16 final size:16
Alignment explanation
Indices: 8256778--8256850 Score: 73
Period size: 16 Copynumber: 4.8 Consensus size: 16
8256768 CGTGTTTTTT
* *
8256778 AAAACCCCTAAAATCC
1 AAAATCCCTTAAATCC
*
8256794 AAAATCCTTTAAATCC
1 AAAATCCCTTAAATCC
**
8256810 -AAA-CCCCAAAATCC
1 AAAATCCCTTAAATCC
8256824 AAAATCCCTTAAATCC
1 AAAATCCCTTAAATCC
8256840 -AAA-CCCTTAAA
1 AAAATCCCTTAAA
8256851 ATCCGAATCT
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
14 16 0.34
15 9 0.19
16 22 0.47
ACGTcount: A:0.48, C:0.33, G:0.00, T:0.19
Consensus pattern (16 bp):
AAAATCCCTTAAATCC
Found at i:8256823 original size:30 final size:30
Alignment explanation
Indices: 8256779--8256854 Score: 116
Period size: 30 Copynumber: 2.5 Consensus size: 30
8256769 GTGTTTTTTA
*
8256779 AAACCCCTAAAATCCAAAATCCTTTAAATCC
1 AAACCCC-AAAATCCAAAATCCCTTAAATCC
8256810 AAACCCCAAAATCCAAAATCCCTTAAATCC
1 AAACCCCAAAATCCAAAATCCCTTAAATCC
*
8256840 AAACCCTTAAAATCC
1 AAACCC-CAAAATCC
8256855 GAATCTTCAA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
30 28 0.67
31 14 0.33
ACGTcount: A:0.46, C:0.34, G:0.00, T:0.20
Consensus pattern (30 bp):
AAACCCCAAAATCCAAAATCCCTTAAATCC
Found at i:8262456 original size:20 final size:21
Alignment explanation
Indices: 8262406--8262456 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
8262396 TGTTAAAAAA
*
8262406 AAAAAGAATTGTTATATTTTAG
1 AAAAA-AATTGTTAGATTTTAG
* *
8262428 AAAATAATTTTTAGATTTT-G
1 AAAAAAATTGTTAGATTTTAG
8262448 AAAAAAATT
1 AAAAAAATT
8262457 ATAAAAATTG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 9 0.36
21 12 0.48
22 4 0.16
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (21 bp):
AAAAAAATTGTTAGATTTTAG
Found at i:8262653 original size:13 final size:13
Alignment explanation
Indices: 8262635--8262664 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8262625 AATAAAAAGG
*
8262635 AAATTTTAAATAA
1 AAATTTTAAACAA
8262648 AAATTTTAAACAA
1 AAATTTTAAACAA
8262661 AAAT
1 AAAT
8262665 AGAAATTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (13 bp):
AAATTTTAAACAA
Found at i:8262654 original size:32 final size:33
Alignment explanation
Indices: 8262613--8262688 Score: 95
Period size: 32 Copynumber: 2.4 Consensus size: 33
8262603 ACCAACAATC
* *
8262613 TAAAAATTTTTTAATAAAAA-GGAAATTTTAAA
1 TAAAAATTTTTTAACAAAAATAGAAATTTTAAA
*
8262645 TAAAAA-TTTTAAACAAAAATAGAAATTTTAAA
1 TAAAAATTTTTTAACAAAAATAGAAATTTTAAA
8262677 -AAAATATTTTTT
1 TAAAA-ATTTTTT
8262689 CCATTTTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
31 15 0.41
32 18 0.49
33 4 0.11
ACGTcount: A:0.57, C:0.01, G:0.04, T:0.38
Consensus pattern (33 bp):
TAAAAATTTTTTAACAAAAATAGAAATTTTAAA
Found at i:8262664 original size:19 final size:18
Alignment explanation
Indices: 8262642--8262680 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
8262632 AGGAAATTTT
8262642 AAATAAAAATTTTAAACAA
1 AAATAAAAATTTTAAA-AA
*
8262661 AAATAGAAATTTTAAAAA
1 AAATAAAAATTTTAAAAA
8262679 AA
1 AA
8262681 TATTTTTTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (18 bp):
AAATAAAAATTTTAAAAA
Found at i:8266436 original size:34 final size:34
Alignment explanation
Indices: 8266393--8266460 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
8266383 AGTGTTAAGT
* *
8266393 ATCTAATCTAAAGTTAATTAATATAGATGAAGAG
1 ATCTAATCTAAAATCAATTAATATAGATGAAGAG
* *
8266427 ATCTAATCTAAAATCAATTAGTATAGATGGAGAG
1 ATCTAATCTAAAATCAATTAATATAGATGAAGAG
8266461 GTCCAACTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.46, C:0.07, G:0.16, T:0.31
Consensus pattern (34 bp):
ATCTAATCTAAAATCAATTAATATAGATGAAGAG
Found at i:8268549 original size:16 final size:16
Alignment explanation
Indices: 8268528--8268559 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
8268518 TTTCGTTCAC
8268528 ACATTATAGTCCAAAA
1 ACATTATAGTCCAAAA
8268544 ACATTATAGTCCAAAA
1 ACATTATAGTCCAAAA
8268560 TGTATATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.19, G:0.06, T:0.25
Consensus pattern (16 bp):
ACATTATAGTCCAAAA
Found at i:8268569 original size:2 final size:2
Alignment explanation
Indices: 8268562--8268608 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
8268552 GTCCAAAATG
*
8268562 TA TA TA TA TA TA TA TT TA TA TA TA TA TA T- TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8268603 TA TA TA
1 TA TA TA
8268609 AAAGGGTAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:8275395 original size:31 final size:31
Alignment explanation
Indices: 8275344--8275415 Score: 101
Period size: 31 Copynumber: 2.3 Consensus size: 31
8275334 TCTTGACTTG
*
8275344 ATTTAAATTTAAATTGATTTGAATCTC-AAATA
1 ATTTAAA-TTAAATTAATTTGAAT-TCAAAATA
8275376 ATTTAAATTAAATTAATTTGAATTCAAAATA
1 ATTTAAATTAAATTAATTTGAATTCAAAATA
*
8275407 ATTTGAATT
1 ATTTAAATT
8275416 CGTTTGAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
30 2 0.05
31 28 0.76
32 7 0.19
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (31 bp):
ATTTAAATTAAATTAATTTGAATTCAAAATA
Found at i:8275410 original size:16 final size:16
Alignment explanation
Indices: 8275360--8275416 Score: 73
Period size: 16 Copynumber: 3.6 Consensus size: 16
8275350 ATTTAAATTG
8275360 ATTTGAATCTC-AAATA
1 ATTTGAAT-TCAAAATA
* *
8275376 ATTTAAATT-AAATTA
1 ATTTGAATTCAAAATA
8275391 ATTTGAATTCAAAATA
1 ATTTGAATTCAAAATA
8275407 ATTTGAATTC
1 ATTTGAATTC
8275417 GTTTGAAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
15 13 0.37
16 22 0.63
ACGTcount: A:0.46, C:0.07, G:0.05, T:0.42
Consensus pattern (16 bp):
ATTTGAATTCAAAATA
Found at i:8279279 original size:20 final size:18
Alignment explanation
Indices: 8279247--8279288 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 18
8279237 TGATAATAGA
8279247 ATGTATAATTGAAATATATG
1 ATGTATAATTGAAA-AT-TG
8279267 ATGTATACA-TGAAAATTG
1 ATGTATA-ATTGAAAATTG
8279285 ATGT
1 ATGT
8279289 CAATTTTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
18 6 0.29
19 2 0.10
20 12 0.57
21 1 0.05
ACGTcount: A:0.43, C:0.02, G:0.17, T:0.38
Consensus pattern (18 bp):
ATGTATAATTGAAAATTG
Found at i:8287217 original size:17 final size:16
Alignment explanation
Indices: 8287182--8287224 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
8287172 TTTTTAAATA
*
8287182 AAAAATAATAATTTTAG
1 AAAAATAA-AATTTAAG
8287199 AAAAATAAAATTTAA-
1 AAAAATAAAATTTAAG
8287214 AGAAAATAAAA
1 A-AAAATAAAA
8287225 ATAAAACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 1 0.04
16 15 0.62
17 8 0.33
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.26
Consensus pattern (16 bp):
AAAAATAAAATTTAAG
Found at i:8292764 original size:21 final size:22
Alignment explanation
Indices: 8292699--8292756 Score: 66
Period size: 21 Copynumber: 2.7 Consensus size: 22
8292689 TTTTTAAAAG
* * *
8292699 TTTGATAACATTTGATA-AAAT
1 TTTGATAACCTTTAATACAATT
*
8292720 TTTGATAATCTTTAATACAATT
1 TTTGATAACCTTTAATACAATT
8292742 TTTG-TAACCTTTAAT
1 TTTGATAACCTTTAAT
8292757 TCTATTTTGG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 24 0.77
22 7 0.23
ACGTcount: A:0.36, C:0.09, G:0.07, T:0.48
Consensus pattern (22 bp):
TTTGATAACCTTTAATACAATT
Found at i:8292818 original size:21 final size:20
Alignment explanation
Indices: 8292801--8292928 Score: 89
Period size: 21 Copynumber: 6.2 Consensus size: 20
8292791 TCATTAAGAC
*
8292801 AATTTTGGTAATTTTTAATAA
1 AATTTTGGTAA-TTTTAATAT
* *
8292822 AATTTTAGTAAGTTTAATAT
1 AATTTTGGTAATTTTAATAT
*
8292842 AA-TTTGGTAGGTTTTAATAT
1 AATTTTGGTA-ATTTTAATAT
*
8292862 AATTTTGGTAGCTTATT-ATAT
1 AATTTTGGTA-ATT-TTAATAT
* ** * *
8292883 AATTTTGATAACCGTTAGTAG
1 AATTTTGGTAA-TTTTAATAT
*
8292904 AATTTTGGTAATCTTGAATAT
1 AATTTTGGTAAT-TTTAATAT
8292925 AATT
1 AATT
8292929 GTAGCAAGTT
Statistics
Matches: 82, Mismatches: 19, Indels: 12
0.73 0.17 0.11
Matches are distributed among these distances:
19 6 0.07
20 21 0.26
21 53 0.65
22 2 0.02
ACGTcount: A:0.34, C:0.03, G:0.14, T:0.48
Consensus pattern (20 bp):
AATTTTGGTAATTTTAATAT
Found at i:8293192 original size:21 final size:21
Alignment explanation
Indices: 8293160--8293356 Score: 77
Period size: 21 Copynumber: 9.4 Consensus size: 21
8293150 CAATTTGCAA
8293160 AATTTT-ATTAACCTTTAATAT
1 AATTTTGA-TAACCTTTAATAT
8293181 AATTTTGATAA-C-TTACGATAT
1 AATTTTGATAACCTTTA--ATAT
* *
8293202 AATTTGGGTAA-CTATGT-ATAT
1 AATTTTGATAACCT-T-TAATAT
** * *
8293223 AATTTTGGCAACATTTAATAA
1 AATTTTGATAACCTTTAATAT
* *
8293244 AATTTT-AGTAA-GTTTGATAT
1 AATTTTGA-TAACCTTTAATAT
* * *
8293264 AATTTTGGTAACTTTTAATAC
1 AATTTTGATAACCTTTAATAT
* * *
8293285 AATTTTGGTAGCC-TTAGATAC
1 AATTTTGATAACCTTTA-ATAT
* ** *
8293306 GATTTTGATAAGTTTTGATAT
1 AATTTTGATAACCTTTAATAT
** * *
8293327 AATTTTGATAATTTTTTATAC
1 AATTTTGATAACCTTTAATAT
8293348 AATTTTGAT
1 AATTTTGAT
8293357 TCTGGTAAGC
Statistics
Matches: 135, Mismatches: 28, Indels: 26
0.71 0.15 0.14
Matches are distributed among these distances:
19 3 0.02
20 20 0.15
21 106 0.79
22 4 0.03
23 1 0.01
24 1 0.01
ACGTcount: A:0.35, C:0.07, G:0.12, T:0.47
Consensus pattern (21 bp):
AATTTTGATAACCTTTAATAT
Found at i:8293291 original size:62 final size:62
Alignment explanation
Indices: 8293181--8293354 Score: 165
Period size: 62 Copynumber: 2.8 Consensus size: 62
8293171 CCTTTAATAT
* ** * * * *
8293181 AATTTTGATAACTTACGATATAATTTGGGTAACTATGTATATAATTTTGGCAACATTTA-ATAA
1 AATTTTGATAAGTTTTGATATAATTTTGGTAACT-TTTATACAATTTTGGCAAC-CTTAGATAA
* * *
8293244 AATTTT-AGTAAG-TTTGATATAATTTTGGTAACTTTTAATACAATTTTGGTAGCCTTAGATAC
1 AATTTTGA-TAAGTTTTGATATAATTTTGGTAACTTTT-ATACAATTTTGGCAACCTTAGATAA
* * *
8293306 GATTTTGATAAGTTTTGATATAATTTTGATAATTTTTTATACAATTTTG
1 AATTTTGATAAGTTTTGATATAATTTTGGTAA-CTTTTATACAATTTTG
8293355 ATTCTGGTAA
Statistics
Matches: 92, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
61 5 0.05
62 44 0.48
63 39 0.42
64 4 0.04
ACGTcount: A:0.34, C:0.06, G:0.13, T:0.47
Consensus pattern (62 bp):
AATTTTGATAAGTTTTGATATAATTTTGGTAACTTTTATACAATTTTGGCAACCTTAGATAA
Found at i:8293323 original size:10 final size:11
Alignment explanation
Indices: 8293301--8293356 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
8293291 GGTAGCCTTA
*
8293301 GATACGATTTT
1 GATACAATTTT
*
8293312 GATA-AGTTTT
1 GATACAATTTT
*
8293322 GATATAATTTT
1 GATACAATTTT
*
8293333 GATA-ATTTTT
1 GATACAATTTT
*
8293343 TATACAATTTT
1 GATACAATTTT
8293354 GAT
1 GAT
8293357 TCTGGTAAGC
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
10 16 0.44
11 20 0.56
ACGTcount: A:0.32, C:0.04, G:0.12, T:0.52
Consensus pattern (11 bp):
GATACAATTTT
Found at i:8293332 original size:11 final size:10
Alignment explanation
Indices: 8293307--8293356 Score: 55
Period size: 10 Copynumber: 4.8 Consensus size: 10
8293297 CTTAGATACG
8293307 ATTTTGATAA
1 ATTTTGATAA
*
8293317 GTTTTGATATA
1 ATTTTGATA-A
8293328 ATTTTGATAA
1 ATTTTGATAA
* *
8293338 TTTTTTATACA
1 ATTTTGATA-A
8293349 ATTTTGAT
1 ATTTTGAT
8293357 TCTGGTAAGC
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
10 16 0.50
11 16 0.50
ACGTcount: A:0.32, C:0.02, G:0.10, T:0.56
Consensus pattern (10 bp):
ATTTTGATAA
Found at i:8293506 original size:20 final size:20
Alignment explanation
Indices: 8293460--8293508 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
8293450 TAGGTATTAG
*
8293460 TTTGGTAAC-ATGATATAGT
1 TTTGGTAACTATAATATAGT
*
8293479 TTTAGTAACTATTAATAT-GT
1 TTTGGTAACTA-TAATATAGT
8293499 TTTGGTAACT
1 TTTGGTAACT
8293509 TTTGATAACA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 8 0.32
20 12 0.48
21 5 0.20
ACGTcount: A:0.31, C:0.06, G:0.16, T:0.47
Consensus pattern (20 bp):
TTTGGTAACTATAATATAGT
Found at i:8293565 original size:21 final size:20
Alignment explanation
Indices: 8293539--8293815 Score: 110
Period size: 21 Copynumber: 13.3 Consensus size: 20
8293529 CTATTGATGT
8293539 AATTTTGGTAACCTTTTATAC
1 AATTTTGGTAA-CTTTTATAC
* * *
8293560 AATTTTGATAACTTATTAGAT
1 AATTTTGGTAACTT-TTATAC
* *
8293581 ACTTTTGGTAATCTTTAATAGC
1 AATTTTGGTAA-CTTTTATA-C
* ** *
8293603 -ATTTTGGTAACGATTCGTAA
1 AATTTTGGTAAC-TTTTATAC
* * *
8293623 AATTTTAGTAGCCTTTAATAC
1 AATTTTGGTA-ACTTTTATAC
* * * *
8293644 AATTTTGATGACCTTTATTTC
1 AATTTTGGTAACTTTTA-TAC
* * * *
8293665 TATTTTGATAA-TTATGATAT
1 AATTTTGGTAACTT-TTATAC
* *
8293685 AATTTTAGTAACTATTTATAT
1 AATTTTGGTAACT-TTTATAC
* *
8293706 AATTTTGGTAACATTTGATAA
1 AATTTTGGTAAC-TTTTATAC
* * * **
8293727 AATTTTAGTAAGTTTGATGT
1 AATTTTGGTAACTTTTATAC
*
8293747 AATTTTGGTAACTTTTAATGC
1 AATTTTGGTAACTTTT-ATAC
* **
8293768 AATTTTAGTAATCTTAGATAC
1 AATTTTGGTAA-CTTTTATAC
*
8293789 AATTTTAGTAATCTTTTATAC
1 AATTTTGGTAA-CTTTTATAC
8293810 -ATTTTG
1 AATTTTG
8293816 ATAATTTTTT
Statistics
Matches: 189, Mismatches: 54, Indels: 27
0.70 0.20 0.10
Matches are distributed among these distances:
20 42 0.22
21 138 0.73
22 9 0.05
ACGTcount: A:0.32, C:0.08, G:0.12, T:0.48
Consensus pattern (20 bp):
AATTTTGGTAACTTTTATAC
Found at i:8293703 original size:42 final size:42
Alignment explanation
Indices: 8293666--8293778 Score: 106
Period size: 41 Copynumber: 2.7 Consensus size: 42
8293656 CTTTATTTCT
*
8293666 ATTTTGAT-A-ATTATGATATAATTTTAGTAACTATTTATATA
1 ATTTTGATAACATT-TGATAAAATTTTAGTAACTATTTATATA
* * * *
8293707 ATTTTGGTAACATTTGATAAAATTTTAGTAAGT-TTGATGTA
1 ATTTTGATAACATTTGATAAAATTTTAGTAACTATTTATATA
* * * **
8293748 ATTTTGGTAACTTTTAATGCAATTTTAGTAA
1 ATTTTGATAACATTTGATAAAATTTTAGTAA
8293779 TCTTAGATAC
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
41 40 0.66
42 18 0.30
43 3 0.05
ACGTcount: A:0.35, C:0.04, G:0.12, T:0.49
Consensus pattern (42 bp):
ATTTTGATAACATTTGATAAAATTTTAGTAACTATTTATATA
Found at i:8293750 original size:41 final size:42
Alignment explanation
Indices: 8293679--8293778 Score: 121
Period size: 41 Copynumber: 2.4 Consensus size: 42
8293669 TTGATAATTA
* *
8293679 TGATATAATTTTAGTAACTATTTATATAATTTTGGTAACATT
1 TGATAAAATTTTAGTAACTATTGATATAATTTTGGTAACATT
* * *
8293721 TGATAAAATTTTAGTAAGT-TTGATGTAATTTTGGTAACTTT
1 TGATAAAATTTTAGTAACTATTGATATAATTTTGGTAACATT
* **
8293762 TAATGCAATTTTAGTAA
1 TGATAAAATTTTAGTAA
8293779 TCTTAGATAC
Statistics
Matches: 50, Mismatches: 8, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
41 33 0.66
42 17 0.34
ACGTcount: A:0.35, C:0.04, G:0.13, T:0.48
Consensus pattern (42 bp):
TGATAAAATTTTAGTAACTATTGATATAATTTTGGTAACATT
Found at i:8293772 original size:62 final size:62
Alignment explanation
Indices: 8293679--8293799 Score: 149
Period size: 62 Copynumber: 2.0 Consensus size: 62
8293669 TTGATAATTA
* *
8293679 TGATATAATTTTAGTAACTATTTATATAATTTTGGTAA-CATTTGATAAAATTTTAGTAAGTT
1 TGATATAATTTTAGTAACTATTTATATAATTTTAGTAATC-TTAGATAAAATTTTAGTAAGTT
* * *
8293741 TGATGTAATTTTGGTAACT-TTTA-ATGCAATTTTAGTAATCTTAGATACAATTTTAGTAA
1 TGATATAATTTTAGTAACTATTTATAT--AATTTTAGTAATCTTAGATAAAATTTTAGTAA
8293800 TCTTTTATAC
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
60 2 0.04
61 4 0.08
62 44 0.86
63 1 0.02
ACGTcount: A:0.36, C:0.05, G:0.12, T:0.47
Consensus pattern (62 bp):
TGATATAATTTTAGTAACTATTTATATAATTTTAGTAATCTTAGATAAAATTTTAGTAAGTT
Found at i:8293856 original size:21 final size:21
Alignment explanation
Indices: 8293810--8293860 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
8293800 TCTTTTATAC
**
8293810 ATTTTGATAATTTTTTTGAAA
1 ATTTTGATAATTTTGATGAAA
*
8293831 GTTTTGATCAATTTTGAT-AAA
1 ATTTTGAT-AATTTTGATGAAA
8293852 ATTTT-ATAA
1 ATTTTGATAA
8293861 CCATCAATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 2 0.08
20 2 0.08
21 14 0.56
22 7 0.28
ACGTcount: A:0.35, C:0.02, G:0.10, T:0.53
Consensus pattern (21 bp):
ATTTTGATAATTTTGATGAAA
Found at i:8294035 original size:21 final size:21
Alignment explanation
Indices: 8293976--8294067 Score: 73
Period size: 21 Copynumber: 4.4 Consensus size: 21
8293966 TATAGATAAT
* **
8293976 AATTTTGGTAA-CCTTCTTAC
1 AATTTTGGTAATCGTTGATAC
* * *
8293996 AATTTTGGT-AGCTGATGATAT
1 AATTTTGGTAATC-GTTGATAC
*
8294017 ATTTTTGGTAATCGTTGATAC
1 AATTTTGGTAATCGTTGATAC
*
8294038 AATTTTGGTAATCTTTGATAGC
1 AATTTTGGTAATCGTTGATA-C
8294060 -ATTTTGGT
1 AATTTTGGT
8294068 GACATTAGGT
Statistics
Matches: 57, Mismatches: 11, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
19 1 0.02
20 10 0.18
21 43 0.75
22 3 0.05
ACGTcount: A:0.25, C:0.10, G:0.18, T:0.47
Consensus pattern (21 bp):
AATTTTGGTAATCGTTGATAC
Found at i:8294127 original size:21 final size:21
Alignment explanation
Indices: 8294077--8294127 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
8294067 TGACATTAGG
8294077 TATAGTTTTAAGAAGCCTTGA
1 TATAGTTTTAAGAAGCCTTGA
* * * *
8294098 TACAATTTTGATGAA-CTTTGA
1 TATAGTTTT-AAGAAGCCTTGA
8294119 TATAGTTTT
1 TATAGTTTT
8294128 TATTTCAATG
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.31, C:0.08, G:0.16, T:0.45
Consensus pattern (21 bp):
TATAGTTTTAAGAAGCCTTGA
Found at i:8297094 original size:20 final size:20
Alignment explanation
Indices: 8297069--8297107 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8297059 ATCTTATAGG
*
8297069 TGTTAATTATCAATACCTAT
1 TGTTAAATATCAATACCTAT
*
8297089 TGTTAAATGTCAATACCTA
1 TGTTAAATATCAATACCTA
8297108 ATGGTAACCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.15, G:0.08, T:0.41
Consensus pattern (20 bp):
TGTTAAATATCAATACCTAT
Found at i:8301047 original size:16 final size:16
Alignment explanation
Indices: 8301013--8301052 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 16
8301003 TTAAATAAAT
8301013 AATAATAATTTTAGAAA
1 AATAA-AATTTTAGAAA
8301030 AATAAAATTTGTAG-AA
1 AATAAAATTT-TAGAAA
8301046 AATAAAA
1 AATAAAA
8301053 ATAAAACCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 14 0.64
17 8 0.36
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.30
Consensus pattern (16 bp):
AATAAAATTTTAGAAA
Found at i:8301053 original size:17 final size:16
Alignment explanation
Indices: 8301013--8301054 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
8301003 TTAAATAAAT
*
8301013 AATAATAATTTTAGAA
1 AATAAAAATTTTAGAA
8301029 AA-ATAAAATTTGTAGAA
1 AATA-AAAATTT-TAGAA
8301046 AATAAAAAT
1 AATAAAAAT
8301055 AAAACCTTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
15 1 0.05
16 8 0.36
17 12 0.55
18 1 0.05
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (16 bp):
AATAAAAATTTTAGAA
Found at i:8306090 original size:21 final size:21
Alignment explanation
Indices: 8306048--8306105 Score: 57
Period size: 21 Copynumber: 2.7 Consensus size: 21
8306038 TTTTTAAAAG
*
8306048 TTTGATAACATTTGATAAAA-T
1 TTTGATAAC-TTTAATAAAATT
*
8306069 TTTGATAATCTTTAATACAATT
1 TTTGATAA-CTTTAATAAAATT
8306091 TTTG-TAACCTTTAAT
1 TTTGATAA-CTTTAAT
8306106 TCTATATTGG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 26 0.81
22 6 0.19
ACGTcount: A:0.36, C:0.09, G:0.07, T:0.48
Consensus pattern (21 bp):
TTTGATAACTTTAATAAAATT
Found at i:8306167 original size:21 final size:20
Alignment explanation
Indices: 8306150--8306277 Score: 80
Period size: 21 Copynumber: 6.2 Consensus size: 20
8306140 TCATTAAGAC
*
8306150 AATTTTGGTAATTTTTAATAA
1 AATTTTGGTAA-TTTTAATAT
* * *
8306171 AATTTTAGTAAGTTTAAAAT
1 AATTTTGGTAATTTTAATAT
*
8306191 AA-TTTGGTAGGTTTTAATAT
1 AATTTTGGTA-ATTTTAATAT
*
8306211 AATTTTGGTAGCTTATT-ATAT
1 AATTTTGGTA-ATT-TTAATAT
* ** * *
8306232 AATTTTGATAACCGTTAGTAG
1 AATTTTGGTAA-TTTTAATAT
*
8306253 AATTTTGGTAATCTTGAATAT
1 AATTTTGGTAAT-TTTAATAT
8306274 AATT
1 AATT
8306278 GTAGCAAGTT
Statistics
Matches: 80, Mismatches: 21, Indels: 12
0.71 0.19 0.11
Matches are distributed among these distances:
19 6 0.08
20 19 0.24
21 53 0.66
22 2 0.03
ACGTcount: A:0.35, C:0.03, G:0.14, T:0.48
Consensus pattern (20 bp):
AATTTTGGTAATTTTAATAT
Found at i:8306257 original size:82 final size:82
Alignment explanation
Indices: 8306171--8306322 Score: 177
Period size: 82 Copynumber: 1.9 Consensus size: 82
8306161 TTTTTAATAA
* * * *
8306171 AATTTTAGTAAGT-TT-AAAATAATT-TGGTAGGTTTTAATATAATTTTGGTAG-CTTATTATAT
1 AATTTTAGTAA-TCTTGAAAATAATTGTAGCAAGTTTTAATATAA--TTGATAGCCTT-TTATAT
8306232 AATTTTGATAACCGTTAGTAG
62 AATTTTGATAACCGTTAGTAG
* * *
8306253 AATTTTGGTAATCTTGAATATAATTGTAGCAAGTTTTGATATAATTGATAGCCTTTTATATAATT
1 AATTTTAGTAATCTTGAAAATAATTGTAGCAAGTTTTAATATAATTGATAGCCTTTTATATAATT
8306318 TTGAT
66 TTGAT
8306323 TTTGATAACC
Statistics
Matches: 59, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
81 1 0.02
82 33 0.56
83 11 0.19
84 14 0.24
ACGTcount: A:0.34, C:0.05, G:0.15, T:0.47
Consensus pattern (82 bp):
AATTTTAGTAATCTTGAAAATAATTGTAGCAAGTTTTAATATAATTGATAGCCTTTTATATAATT
TTGATAACCGTTAGTAG
Found at i:8306640 original size:20 final size:20
Alignment explanation
Indices: 8306580--8306659 Score: 63
Period size: 20 Copynumber: 3.9 Consensus size: 20
8306570 CATAATTTGG
*
8306580 GTAACTATTATATA-AATTTTG
1 GTAACT-TTA-ATACAATTTTA
* *
8306601 GCAACATTTAATAAAATTTTA
1 GTAAC-TTTAATACAATTTTA
* * * *
8306622 GTAAGTTTGATATAATTTTG
1 GTAACTTTAATACAATTTTA
8306642 GTAACTTTAATACAATTT
1 GTAACTTTAATACAATTT
8306660 GGTAGCCTTA
Statistics
Matches: 47, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
20 30 0.64
21 16 0.34
22 1 0.02
ACGTcount: A:0.39, C:0.06, G:0.10, T:0.45
Consensus pattern (20 bp):
GTAACTTTAATACAATTTTA
Found at i:8306721 original size:20 final size:21
Alignment explanation
Indices: 8306670--8306723 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 21
8306660 GGTAGCCTTA
*
8306670 GATACGATTTTGATAAGTTTT
1 GATACAATTTTGATAAGTTTT
**
8306691 GATGTAA-TTTGATAA-TTTT
1 GATACAATTTTGATAAGTTTT
*
8306710 TATACAATTTTGAT
1 GATACAATTTTGAT
8306724 TCTGGTAAGC
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
19 8 0.31
20 14 0.54
21 4 0.15
ACGTcount: A:0.31, C:0.04, G:0.15, T:0.50
Consensus pattern (21 bp):
GATACAATTTTGATAAGTTTT
Found at i:8306873 original size:20 final size:20
Alignment explanation
Indices: 8306827--8306875 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
8306817 TAGGTATTAG
*
8306827 TTTGGTAAC-ATGATATAGT
1 TTTGGTAACTATAATATAGT
*
8306846 TTTAGTAACTATTAATAT-GT
1 TTTGGTAACTA-TAATATAGT
8306866 TTTGGTAACT
1 TTTGGTAACT
8306876 TTTGATAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 8 0.32
20 12 0.48
21 5 0.20
ACGTcount: A:0.31, C:0.06, G:0.16, T:0.47
Consensus pattern (20 bp):
TTTGGTAACTATAATATAGT
Found at i:8306943 original size:21 final size:20
Alignment explanation
Indices: 8306906--8307179 Score: 89
Period size: 21 Copynumber: 13.3 Consensus size: 20
8306896 CTATTGATGC
8306906 AACTTTTATACAATTTTGAT
1 AACTTTTATACAATTTTGAT
* * *
8306926 AACTTATTATATACTTTTGGT
1 AACTT-TTATACAATTTTGAT
* *
8306947 AATCTTTAATAGC-ATTTTGGT
1 AA-CTTTTATA-CAATTTTGAT
* ** *
8306968 AACAATTCGTAAAATTTT-AGT
1 AAC-TTTTATACAATTTTGA-T
*
8306989 AACCTTTAATACAATTTTGAT
1 AA-CTTTTATACAATTTTGAT
* * * *
8307010 GACCTTTATTTCTATTTTGAT
1 AACTTTTA-TACAATTTTGAT
* *
8307031 AA-TTATGATATAATTTTG-T
1 AACTT-TTATACAATTTTGAT
* *
8307050 AACTATTTATATAATTTTGGT
1 AACT-TTTATACAATTTTGAT
* *
8307071 AACATTTGATAAAATTTT-AGT
1 AAC-TTTTATACAATTTTGA-T
* * ** *
8307092 AAGTTTGATGTAATTTTGGT
1 AACTTTTATACAATTTTGAT
*
8307112 AACTTTTAATGCAATTTT-AGT
1 AACTTTT-ATACAATTTTGA-T
**
8307133 AATCTTAGATACAATTTT-AGT
1 AA-CTTTTATACAATTTTGA-T
8307154 AATCTTTTATAC-ATTTTGAT
1 AA-CTTTTATACAATTTTGAT
8307174 AA-TTTT
1 AACTTTT
8307180 TCTGAAAGTT
Statistics
Matches: 191, Mismatches: 43, Indels: 42
0.69 0.16 0.15
Matches are distributed among these distances:
18 4 0.02
19 3 0.02
20 57 0.30
21 118 0.62
22 9 0.05
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.49
Consensus pattern (20 bp):
AACTTTTATACAATTTTGAT
Found at i:8307048 original size:20 final size:20
Alignment explanation
Indices: 8307023--8307115 Score: 75
Period size: 20 Copynumber: 4.5 Consensus size: 20
8307013 CTTTATTTCT
*
8307023 ATTTTGATAATTA-TGATATA
1 ATTTTG-TAACTATTGATATA
*
8307043 ATTTTGTAACTATTTATATA
1 ATTTTGTAACTATTGATATA
*
8307063 ATTTTGGTAAC-ATTTGATAAA
1 ATTTT-GTAACTA-TTGATATA
* *
8307084 ATTTTAGTAAGT-TTGATGTA
1 ATTTT-GTAACTATTGATATA
8307104 ATTTTGGTAACT
1 ATTTT-GTAACT
8307116 TTTAATGCAA
Statistics
Matches: 59, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
19 5 0.08
20 34 0.58
21 20 0.34
ACGTcount: A:0.34, C:0.03, G:0.13, T:0.49
Consensus pattern (20 bp):
ATTTTGTAACTATTGATATA
Found at i:8307081 original size:41 final size:41
Alignment explanation
Indices: 8307036--8307155 Score: 116
Period size: 41 Copynumber: 2.9 Consensus size: 41
8307026 TTGATAATTA
* *
8307036 TGATATAATTTT-GTAACTATTTATATAATTTTGGTAACATT
1 TGATAAAATTTTAGTAACT-TTGATATAATTTTGGTAACATT
* * *
8307077 TGATAAAATTTTAGTAAGTTTGATGTAATTTTGGTAACTTT
1 TGATAAAATTTTAGTAACTTTGATATAATTTTGGTAACATT
* ** * * *
8307118 TAATGCAATTTTAGTAATCTTAGATACAATTTTAGTAA
1 TGATAAAATTTTAGTAA-CTTTGATATAATTTTGGTAA
8307156 TCTTTTATAC
Statistics
Matches: 64, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
41 44 0.69
42 20 0.31
ACGTcount: A:0.35, C:0.05, G:0.12, T:0.47
Consensus pattern (41 bp):
TGATAAAATTTTAGTAACTTTGATATAATTTTGGTAACATT
Found at i:8307170 original size:103 final size:103
Alignment explanation
Indices: 8306916--8307171 Score: 236
Period size: 103 Copynumber: 2.5 Consensus size: 103
8306906 AACTTTTATA
* * * *
8306916 CAATTTTGATAACTTATTATATACTTTTGGTAATCTTTAATAGCATTTTGGTAACAATTCGTAAA
1 CAATTTTGATAA-TTATGATACAATTTT-GTAATCTTTTATAGCATTTTGGTAACAATTCGTAAA
* * *
8306981 ATTTTAGTAACCTTTAATACAATTTTGATGACCTTTATTT
64 ATTTTAGTAACCTTTAATACAATTTTGATAACCTTTAATG
* * ** *
8307021 CTATTTTGATAATTATGATATAATTTTGTAA-CTATTTATATAATTTTGGTAAC-ATTTGATAAA
1 CAATTTTGATAATTATGATACAATTTTGTAATCT-TTTATAGCATTTTGGTAACAATTCG-TAAA
* * ** * *
8307084 ATTTTAGTAA-GTTTGATGTAATTTTGGTAACTTTTAATG
64 ATTTTAGTAACCTTTAATACAATTTTGATAACCTTTAATG
8307123 CAATTTT-AGTAATCT-TAGATACAATTTTAGTAATCTTTTATA-CATTTTG
1 CAATTTTGA-TAAT-TAT-GATACAATTTT-GTAATCTTTTATAGCATTTTG
8307172 ATAATTTTTC
Statistics
Matches: 125, Mismatches: 19, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
101 1 0.01
102 37 0.30
103 51 0.41
104 23 0.18
105 13 0.10
ACGTcount: A:0.33, C:0.08, G:0.11, T:0.48
Consensus pattern (103 bp):
CAATTTTGATAATTATGATACAATTTTGTAATCTTTTATAGCATTTTGGTAACAATTCGTAAAAT
TTTAGTAACCTTTAATACAATTTTGATAACCTTTAATG
Found at i:8307212 original size:21 final size:22
Alignment explanation
Indices: 8307166--8307216 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 22
8307156 TCTTTTATAC
*
8307166 ATTTTGAT-AATTTTTCTGAAA
1 ATTTTGATAAATTTTGCTGAAA
* *
8307187 GTTTTGATAAATTTTGGT-AAA
1 ATTTTGATAAATTTTGCTGAAA
8307208 ATTTT-ATAA
1 ATTTTGATAA
8307217 CCATCAATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 4 0.16
21 14 0.56
22 7 0.28
ACGTcount: A:0.35, C:0.02, G:0.12, T:0.51
Consensus pattern (22 bp):
ATTTTGATAAATTTTGCTGAAA
Found at i:8307399 original size:21 final size:21
Alignment explanation
Indices: 8307375--8307423 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
8307365 GATGATATAT
8307375 TTTTGGTAATCGTTAATA-CAA
1 TTTTGGTAATCGTTAATAGC-A
* *
8307396 TTTTGGTAATCTTTGATAGCA
1 TTTTGGTAATCGTTAATAGCA
8307417 TTTTGGT
1 TTTTGGT
8307424 GACATTAGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 24 0.96
22 1 0.04
ACGTcount: A:0.24, C:0.08, G:0.18, T:0.49
Consensus pattern (21 bp):
TTTTGGTAATCGTTAATAGCA
Found at i:8314385 original size:17 final size:16
Alignment explanation
Indices: 8314350--8314392 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
8314340 TTTTTAAATA
*
8314350 AAAAATAATAATTTTAG
1 AAAAATAA-AATTTAAG
8314367 AAAAATAAAATTTGAAG
1 AAAAATAAAATTT-AAG
8314384 -AAAATAAAA
1 AAAAATAAAA
8314393 ATAAAACCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 14 0.58
17 10 0.42
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (16 bp):
AAAAATAAAATTTAAG
Found at i:8318926 original size:19 final size:19
Alignment explanation
Indices: 8318879--8318928 Score: 84
Period size: 19 Copynumber: 2.7 Consensus size: 19
8318869 AGTAAAATGA
*
8318879 AAATTTT-ATATTTTAGTG
1 AAATTTTGATTTTTTAGTG
8318897 AAATTTTGATTTTTTAGTG
1 AAATTTTGATTTTTTAGTG
8318916 AAATTTTGATTTT
1 AAATTTTGATTTT
8318929 CTTATCATGT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
18 7 0.23
19 23 0.77
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.58
Consensus pattern (19 bp):
AAATTTTGATTTTTTAGTG
Found at i:8319803 original size:21 final size:22
Alignment explanation
Indices: 8319738--8319795 Score: 66
Period size: 21 Copynumber: 2.7 Consensus size: 22
8319728 TTTTTAAAAC
* * *
8319738 TTTGATAACATTTGATA-AAAT
1 TTTGATAACCTTTAATACAATT
*
8319759 TTTGATAATCTTTAATACAATT
1 TTTGATAACCTTTAATACAATT
8319781 TTTG-TAACCTTTAAT
1 TTTGATAACCTTTAAT
8319796 TCTATTTTGG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 24 0.77
22 7 0.23
ACGTcount: A:0.36, C:0.09, G:0.07, T:0.48
Consensus pattern (22 bp):
TTTGATAACCTTTAATACAATT
Found at i:8319911 original size:21 final size:21
Alignment explanation
Indices: 8319840--8319910 Score: 92
Period size: 20 Copynumber: 3.5 Consensus size: 21
8319830 CCATTAAGAC
*
8319840 AATTTTGGTAATTTTTAATAA
1 AATTTTGGTAAGTTTTAATAA
* *
8319861 AATTTTAGTAAG-TTTAATAT
1 AATTTTGGTAAGTTTTAATAA
*
8319881 AA-TTTGGTAGGTTTTAATAA
1 AATTTTGGTAAGTTTTAATAA
8319901 AATTTTGGTA
1 AATTTTGGTA
8319911 GCTTATTATA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
19 7 0.17
20 18 0.43
21 17 0.40
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (21 bp):
AATTTTGGTAAGTTTTAATAA
Found at i:8319967 original size:21 final size:20
Alignment explanation
Indices: 8319840--8319967 Score: 82
Period size: 21 Copynumber: 6.2 Consensus size: 20
8319830 CCATTAAGAC
* *
8319840 AATTTTGGTAATTTTTAATAA
1 AATTTTGGTAA-TCTTAATAT
*
8319861 AATTTTAGTAAGT-TTAATAT
1 AATTTTGGTAA-TCTTAATAT
* * *
8319881 AA-TTTGGTAGGTTTTAATAA
1 AATTTTGGTA-ATCTTAATAT
*
8319901 AATTTTGGT-AGCTTATTATAT
1 AATTTTGGTAATCTTA--ATAT
* * *
8319922 AATTTTGATAATCGTTAGTAG
1 AATTTTGGTAATC-TTAATAT
8319943 AATTTTGGTAATCTTGAATAT
1 AATTTTGGTAATCTT-AATAT
8319964 AATT
1 AATT
8319968 GTAGCAAGTT
Statistics
Matches: 82, Mismatches: 17, Indels: 16
0.71 0.15 0.14
Matches are distributed among these distances:
19 10 0.12
20 18 0.22
21 49 0.60
22 2 0.02
23 3 0.04
ACGTcount: A:0.35, C:0.02, G:0.14, T:0.48
Consensus pattern (20 bp):
AATTTTGGTAATCTTAATAT
Found at i:8320285 original size:21 final size:21
Alignment explanation
Indices: 8320261--8320415 Score: 111
Period size: 21 Copynumber: 7.4 Consensus size: 21
8320251 AACTTACGAC
*
8320261 ATAATTTGGGTAACTATTT-AT
1 ATAATTTTGGTAACT-TTTAAT
* *
8320282 ATAATTTTGGCAACATTTAAT
1 ATAATTTTGGTAACTTTTAAT
* * * *
8320303 AAAATTTTAGTAA-GTTTGAT
1 ATAATTTTGGTAACTTTTAAT
8320323 ATAATTTTGGTAACTTTTAAT
1 ATAATTTTGGTAACTTTTAAT
* * *
8320344 ACAATTTTGGTAGC-CTTAGAT
1 ATAATTTTGGTAACTTTTA-AT
* * *
8320365 A-AGATTTTGATAAGTTTTGAT
1 ATA-ATTTTGGTAACTTTTAAT
* *
8320386 ATAATTTTGATAACTTTTTAT
1 ATAATTTTGGTAACTTTTAAT
*
8320407 ACAATTTTG
1 ATAATTTTG
8320416 ATTCTGGTAA
Statistics
Matches: 105, Mismatches: 23, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
20 23 0.22
21 79 0.75
22 3 0.03
ACGTcount: A:0.34, C:0.06, G:0.13, T:0.47
Consensus pattern (21 bp):
ATAATTTTGGTAACTTTTAAT
Found at i:8320352 original size:62 final size:62
Alignment explanation
Indices: 8320243--8320415 Score: 181
Period size: 62 Copynumber: 2.8 Consensus size: 62
8320233 CTTTACTTCT
* ** * * * *
8320243 ATTTTGATAACTTACGACATAATTTGGGTAACTATTTATATAATTTTGGCAACATTTA-ATAAA
1 ATTTTGATAAGTTTTGATATAATTTTGGTAACT-TTTATACAATTTTGGCAAC-CTTAGATAAA
* * *
8320306 ATTTT-AGTAAG-TTTGATATAATTTTGGTAACTTTTAATACAATTTTGGTAGCCTTAGATAAG
1 ATTTTGA-TAAGTTTTGATATAATTTTGGTAACTTTT-ATACAATTTTGGCAACCTTAGATAAA
*
8320368 ATTTTGATAAGTTTTGATATAATTTTGATAACTTTTTATACAATTTTG
1 ATTTTGATAAGTTTTGATATAATTTTGGTAAC-TTTTATACAATTTTG
8320416 ATTCTGGTAA
Statistics
Matches: 93, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
61 6 0.06
62 44 0.47
63 39 0.42
64 4 0.04
ACGTcount: A:0.34, C:0.07, G:0.13, T:0.46
Consensus pattern (62 bp):
ATTTTGATAAGTTTTGATATAATTTTGGTAACTTTTATACAATTTTGGCAACCTTAGATAAA
Found at i:8320404 original size:11 final size:10
Alignment explanation
Indices: 8320362--8320417 Score: 58
Period size: 11 Copynumber: 5.3 Consensus size: 10
8320352 GGTAGCCTTA
8320362 GATAAGATTTT
1 GATAA-ATTTT
*
8320373 GATAAGTTTT
1 GATAAATTTT
8320383 GATATAATTTT
1 GATA-AATTTT
*
8320394 GATAACTTTT
1 GATAAATTTT
*
8320404 TATACAATTTT
1 GATA-AATTTT
8320415 GAT
1 GAT
8320418 TCTGGTAAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
10 16 0.43
11 21 0.57
ACGTcount: A:0.34, C:0.04, G:0.12, T:0.50
Consensus pattern (10 bp):
GATAAATTTT
Found at i:8320754 original size:22 final size:21
Alignment explanation
Indices: 8320727--8320805 Score: 76
Period size: 21 Copynumber: 3.9 Consensus size: 21
8320717 TTGATAATTA
8320727 TGATATAATTTTGGTAAACTATT
1 TGATATAATTTTGGT-AAC-ATT
8320750 T-ATATAATTTTGGTAACATT
1 TGATATAATTTTGGTAACATT
* * *
8320770 TGATAAAATTTTAGT-A-GTT
1 TGATATAATTTTGGTAACATT
*
8320789 TGATGTAA-TTTGGTAAC
1 TGATATAATTTTGGTAAC
8320806 TTTTATGCAT
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
18 5 0.11
19 9 0.19
20 5 0.11
21 14 0.30
22 13 0.28
23 1 0.02
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (21 bp):
TGATATAATTTTGGTAACATT
Found at i:8320781 original size:21 final size:23
Alignment explanation
Indices: 8320727--8320781 Score: 80
Period size: 22 Copynumber: 2.5 Consensus size: 23
8320717 TTGATAATTA
8320727 TGATATAATTTTGGTAAACTATT
1 TGATATAATTTTGGTAAACTATT
8320750 T-ATATAATTTTGGT-AAC-ATT
1 TGATATAATTTTGGTAAACTATT
*
8320770 TGATAAAATTTT
1 TGATATAATTTT
8320782 AGTAGTTTGA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 4 0.13
21 12 0.40
22 13 0.43
23 1 0.03
ACGTcount: A:0.36, C:0.04, G:0.11, T:0.49
Consensus pattern (23 bp):
TGATATAATTTTGGTAAACTATT
Found at i:8320854 original size:21 final size:20
Alignment explanation
Indices: 8320801--8320859 Score: 75
Period size: 21 Copynumber: 3.0 Consensus size: 20
8320791 ATGTAATTTG
*
8320801 GTAA-CTTTTATGCATTTTA
1 GTAATCTTTTATACATTTTA
**
8320820 GTAATCTTAGATACAATTTTA
1 GTAATCTTTTATAC-ATTTTA
8320841 GTAATCTTTTATACATTTT
1 GTAATCTTTTATACATTTT
8320860 GATAATTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
19 4 0.12
20 11 0.33
21 18 0.55
ACGTcount: A:0.31, C:0.10, G:0.08, T:0.51
Consensus pattern (20 bp):
GTAATCTTTTATACATTTTA
Found at i:8321087 original size:21 final size:21
Alignment explanation
Indices: 8321063--8321111 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
8321053 GATGATATAT
8321063 TTTTGGTAATCGTTAATA-CAA
1 TTTTGGTAATCGTTAATAGC-A
* *
8321084 TTTTGGTAATCTTTGATAGCA
1 TTTTGGTAATCGTTAATAGCA
8321105 TTTTGGT
1 TTTTGGT
8321112 GACATTATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 24 0.96
22 1 0.04
ACGTcount: A:0.24, C:0.08, G:0.18, T:0.49
Consensus pattern (21 bp):
TTTTGGTAATCGTTAATAGCA
Found at i:8324245 original size:23 final size:23
Alignment explanation
Indices: 8324219--8324263 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
8324209 ATTAGCATCC
* *
8324219 CTATTGAACTAAATATGGCCATT
1 CTATTGAACAAAATAAGGCCATT
*
8324242 CTATTGAAGAAAATAAGGCCAT
1 CTATTGAACAAAATAAGGCCAT
8324264 CAACTATGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.29
Consensus pattern (23 bp):
CTATTGAACAAAATAAGGCCATT
Found at i:8324378 original size:20 final size:20
Alignment explanation
Indices: 8324350--8324390 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
8324340 CCAAATAGAA
*
8324350 AAATGAAAGGCCTATACATC
1 AAATAAAAGGCCTATACATC
8324370 AAATAAAAGGCCTATACATC
1 AAATAAAAGGCCTATACATC
8324390 A
1 A
8324391 CATCAGTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.49, C:0.20, G:0.12, T:0.20
Consensus pattern (20 bp):
AAATAAAAGGCCTATACATC
Found at i:8327239 original size:23 final size:23
Alignment explanation
Indices: 8327195--8327239 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
8327185 TCTTACTAAA
* *
8327195 AAAAAAAATTAAGAGAATAAAAC
1 AAAAAAAATTAAGACAAGAAAAC
8327218 AAAAAAAATTCAAG-CAAGAAAA
1 AAAAAAAATT-AAGACAAGAAAA
8327240 GTTTAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.73, C:0.07, G:0.09, T:0.11
Consensus pattern (23 bp):
AAAAAAAATTAAGACAAGAAAAC
Found at i:8328069 original size:6 final size:6
Alignment explanation
Indices: 8328058--8328089 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
8328048 TTCTTATGGG
8328058 TTTT-T TTTT-T TTTTGT TTTTGT TTTTGT TTTT
1 TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTT
8328090 CACAACTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 9 0.35
6 17 0.65
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (6 bp):
TTTTGT
Found at i:8330373 original size:18 final size:18
Alignment explanation
Indices: 8330350--8330384 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8330340 CAAAGTGGTG
8330350 AAGAACAATTTCTAGGTA
1 AAGAACAATTTCTAGGTA
*
8330368 AAGAACAGTTTCTAGGT
1 AAGAACAATTTCTAGGT
8330385 GAAATAGTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.29
Consensus pattern (18 bp):
AAGAACAATTTCTAGGTA
Found at i:8330850 original size:17 final size:16
Alignment explanation
Indices: 8330812--8330856 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
8330802 GTTTTTAAAT
*
8330812 AAAAAATAATAATTTTA
1 AAAAAATAA-AATTTAA
8330829 AAAAAATAAAATTTAA
1 AAAAAATAAAATTTAA
*
8330845 AGAAAAACAAAA
1 A-AAAAATAAAA
8330857 ATAAAATCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 7 0.28
17 18 0.72
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (16 bp):
AAAAAATAAAATTTAA
Done.