Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25818110
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 67000 characters in sequence are not A, C, G, or T
File 45 of 127
Found at i:8990618 original size:248 final size:251
Alignment explanation
Indices: 8990176--8991111 Score: 626
Period size: 238 Copynumber: 3.9 Consensus size: 251
8990166 TATTTAAAAA
8990176 AATTAATTAAAATTTTCTATTACCAACATAATTATTTATGTTACAATAATATATTCTTATAAATA
1 AATTAATTAAAATTTTCTATTACCAACATAATTATTTATGTTACAATAATATATTCTTATAAATA
8990241 TTCTTACATTCAATTACGTTTAAAATTATCATAACATTTTCTTAGTATGTTACAACACTTCTTAT
66 TTCTTACATTCAATTACGTTTAAAATTATCATAACATTTTCTTAGTATGTTACAACACTTCTTAT
* * *
8990306 TCATTTTACATCAAATAATACTAAATTTACATTTCTTCTCACTTGTTTACATTATCAATTTATTT
131 CCATTTTACACCAAATAATACTAAATTTACATATCTTCTCACTTGTTTACATTATCAATTTATTT
8990371 TTTAATTTTTAGCTATTTTACTTTATATATATATATATATATATATACAAAAACAAT
196 TTTAATTTTTAGCTATTTTAC-TTATATATATATATATATATATATACAAAAACAAT
* * * * * * **
8990428 AATTAATTAAAATTTTGTATTGCTATCATAATTATTTATAG-TATAATAATATATTTTTATATTT
1 AATTAATTAAAATTTTCTATTACCAACATAATTATTTAT-GTTACAATAATATATTCTTATAAAT
* * * * * * * * * ** * *
8990492 GTTCTTGCTTTCCATTATG-TTAGAATTATGATAGC-TCTTTCTTAGTATTTTATGATACTTTTT
65 ATTCTTACATTCAATTACGTTTAAAATTATCATAACAT-TTTCTTAGTATGTTACAACACTTCTT
* * * *
8990555 A-CCAATTTTATACCAAATGATACTAATTTTACA-AT-TT-TCACTTGTTTATATTATCAATTTA
129 ATCC-ATTTTACACCAAATAATACTAAATTTACATATCTTCTCACTTGTTTACATTATCAATTTA
* * **
8990616 TTTTTTAATTTTTAGCTATTTTTC-T-TATATAT-T-CATA-GGA-AT--------AAT
193 TTTTTTAATTTTTAGCTATTTTACTTATATATATATATATATATATATACAAAAACAAT
* * * **
8990661 AATTAATTAAAATTTTAC-ATTATCAACATAATTATTTACT-TTACAATAATATTTTCTTACAGT
1 AATTAATTAAAATTTT-CTATTACCAACATAATTATTTA-TGTTACAATAATATATTCTTATAAA
* * ** * * ** * * * *
8990724 TGTTTTTATTTTTC-ATTACGTTTAGAACTATCATAATTTTTTTTTTAATGTGTTACAACACTTT
64 TATTCTTA-CATTCAATTACGTTTAAAATTATCATAA-CATTTTCTTAGTATGTTACAACACTTC
* * * * * * * * *
8990788 TTA-CCTATTTTACATCAAATAATACTAATTTTTCGTTTGTTTTCATTTGTTTACTTTATCAATT
127 TTATCC-ATTTTACACCAAATAATACTAAATTTACATATCTTCTCACTTGTTTACATTATCAATT
** * * *
8990852 TATTTTTTTAATTCCTA--TA-TGT--TT-T-TCT-TA-A-ATAT-T-TAT---AAAATAAT
191 TA-TTTTTTAATTTTTAGCTATTTTACTTATATATATATATATATATATATACAAAAACAAT
* * * * * *
8990899 AATTAATTAAAATTTTAC-ATTGCCAATATAATTATTTACGTTACAATAATATATTATTATGACT
1 AATTAATTAAAATTTT-CTATTACCAACATAATTATTTATGTTACAATAATATATTCTTATAAAT
* * ** * * *** * * *
8990963 GTTC-TAAATTTCAATTATATTTAGAATTGTCATAATGCTTT-TTAGTATATTATAACAATTCTT
65 ATTCTTACA-TTCAATTACGTTTAAAATTATCATAACATTTTCTTAGTATGTTACAACACTTCTT
* * * * * * * ** * *
8991026 ATCCATTTTACACTAAATGATATTAATTTTAGATTTCTTCTCACTTTTTTATGTTACCAATATAT
129 ATCCATTTTACACCAAATAATACTAAATTTACATATCTTCTCACTTGTTTACATTATCAATTTAT
*
8991091 TTTTTAATTTTTAACTATTTT
194 TTTTTAATTTTTAGCTATTTT
8991112 TTATTTGTTT
Statistics
Matches: 538, Mismatches: 115, Indels: 76
0.74 0.16 0.10
Matches are distributed among these distances:
233 69 0.13
234 19 0.04
235 60 0.11
236 66 0.12
237 17 0.03
238 100 0.19
239 12 0.02
241 2 0.00
242 1 0.00
243 3 0.01
244 1 0.00
245 7 0.01
246 1 0.00
248 46 0.09
249 2 0.00
250 3 0.01
251 60 0.11
252 68 0.13
253 1 0.00
ACGTcount: A:0.34, C:0.11, G:0.05, T:0.51
Consensus pattern (251 bp):
AATTAATTAAAATTTTCTATTACCAACATAATTATTTATGTTACAATAATATATTCTTATAAATA
TTCTTACATTCAATTACGTTTAAAATTATCATAACATTTTCTTAGTATGTTACAACACTTCTTAT
CCATTTTACACCAAATAATACTAAATTTACATATCTTCTCACTTGTTTACATTATCAATTTATTT
TTTAATTTTTAGCTATTTTACTTATATATATATATATATATATATACAAAAACAAT
Found at i:8991793 original size:18 final size:18
Alignment explanation
Indices: 8991770--8991804 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8991760 AATATTATCT
*
8991770 ATATTTTTTATTTATTTG
1 ATATTTTTTATATATTTG
8991788 ATATTTTTTATATATTT
1 ATATTTTTTATATATTT
8991805 ATAAGAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (18 bp):
ATATTTTTTATATATTTG
Found at i:8992641 original size:19 final size:20
Alignment explanation
Indices: 8992590--8992641 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 20
8992580 TGATAAACAG
* *
8992590 ATTTTATTTTTTAATTTAAA
1 ATTTAATTTTATAATTTAAA
**
8992610 ATTTAA-TCAATAA-TTAAA
1 ATTTAATTTTATAATTTAAA
8992628 ATTTAATTTTATAA
1 ATTTAATTTTATAA
8992642 ATCTAATGGT
Statistics
Matches: 25, Mismatches: 6, Indels: 3
0.74 0.18 0.09
Matches are distributed among these distances:
18 11 0.44
19 9 0.36
20 5 0.20
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (20 bp):
ATTTAATTTTATAATTTAAA
Found at i:8995328 original size:29 final size:30
Alignment explanation
Indices: 8995275--8995339 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 30
8995265 TCTATTCAAA
8995275 ATTTCTCATCCACCCATCCGACCATCCCAC
1 ATTTCTCATCCACCCATCCGACCATCCCAC
* * * * *
8995305 -TTTCTCATTCACCTATTCGGCCATTCCAC
1 ATTTCTCATCCACCCATCCGACCATCCCAC
8995334 ATTTCT
1 ATTTCT
8995340 TCTTCCATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
29 24 0.83
30 5 0.17
ACGTcount: A:0.20, C:0.42, G:0.05, T:0.34
Consensus pattern (30 bp):
ATTTCTCATCCACCCATCCGACCATCCCAC
Found at i:8997348 original size:3 final size:3
Alignment explanation
Indices: 8997340--8997371 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
8997330 TAGCTAGTTG
8997340 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
8997372 GCTTTACATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:8999845 original size:17 final size:15
Alignment explanation
Indices: 8999825--8999871 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
8999815 TTTTAGCATA
8999825 TTGTTAGTTATTATATT
1 TTGTT-GTTA-TATATT
8999842 TTGTTGTTATATATT
1 TTGTTGTTATATATT
*
8999857 AT-TTGTTA-ATATT
1 TTGTTGTTATATATT
8999870 TT
1 TT
8999872 ATTATTTCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 6 0.21
14 6 0.21
15 7 0.25
16 4 0.14
17 5 0.18
ACGTcount: A:0.23, C:0.00, G:0.11, T:0.66
Consensus pattern (15 bp):
TTGTTGTTATATATT
Found at i:9000011 original size:15 final size:16
Alignment explanation
Indices: 8999966--9000029 Score: 53
Period size: 16 Copynumber: 3.9 Consensus size: 16
8999956 ACTAGTTTGG
8999966 TAAATAATATTATCTTTTT
1 TAAAT-ATATTA--TTTTT
*
8999985 TAACTA-ATTTATTTTT
1 TAAATATA-TTATTTTT
*
9000001 TATAT-TATTA-TTTT
1 TAAATATATTATTTTT
9000015 TAAATATATTATTTT
1 TAAATATATTATTTT
9000030 ATGATATTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 11
0.71 0.08 0.21
Matches are distributed among these distances:
14 8 0.22
15 8 0.22
16 12 0.32
17 1 0.03
18 4 0.11
19 4 0.11
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (16 bp):
TAAATATATTATTTTT
Found at i:9000014 original size:14 final size:15
Alignment explanation
Indices: 8999997--9000029 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8999987 ACTAATTTAT
*
8999997 TTTTTATAT-TATTA
1 TTTTTAAATATATTA
9000011 TTTTTAAATATATTA
1 TTTTTAAATATATTA
9000026 TTTT
1 TTTT
9000030 ATGATATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTTAAATATATTA
Found at i:9000027 original size:30 final size:30
Alignment explanation
Indices: 8999972--9000029 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 30
8999962 TTGGTAAATA
*
8999972 ATATTATCTTTTTTAACTAATTTATTTTTT
1 ATATTATCTTTTTTAAATAATTTATTTTTT
9000002 ATATTAT-TATTTTTAAAT-ATATTATTTT
1 ATATTATCT-TTTTTAAATAAT-TTATTTT
9000030 ATGATATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 3 0.12
30 22 0.88
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (30 bp):
ATATTATCTTTTTTAAATAATTTATTTTTT
Found at i:9000036 original size:15 final size:14
Alignment explanation
Indices: 8999994--9000042 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
8999984 TTAACTAATT
8999994 TATT-TTTTATAT-
1 TATTATTTTATATA
*
9000006 TATTATTTTTAAATA
1 TATTA-TTTTATATA
9000021 TATTATTTTATGATA
1 TATTATTTTAT-ATA
9000036 T-TTATTT
1 TATTATTT
9000043 ATTCATCTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
12 4 0.13
14 18 0.58
15 9 0.29
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (14 bp):
TATTATTTTATATA
Found at i:9001755 original size:24 final size:24
Alignment explanation
Indices: 9001724--9001785 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
9001714 AATATCATTC
*
9001724 AAATATAATATTA-ATCATACAAT
1 AAATATAATATCATATCATACAAT
9001747 AATATATAATATCATATCATACAAT
1 AA-ATATAATATCATATCATACAAT
*
9001772 AAATATAAAATCAT
1 AAATATAATATCAT
9001786 GCAATAATAG
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
23 2 0.06
24 21 0.60
25 12 0.34
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.34
Consensus pattern (24 bp):
AAATATAATATCATATCATACAAT
Found at i:9001868 original size:47 final size:45
Alignment explanation
Indices: 9001800--9001920 Score: 138
Period size: 47 Copynumber: 2.6 Consensus size: 45
9001790 TAATAGTAAA
* *
9001800 TAAATAAATATGCAAATAAATATATTAATAATTATAC-AATCACAT
1 TAAATAAATATACAAATAAATATATTAATAATAATACAAAT-ACAT
* *
9001845 TAAATATAATCATACAAATAAATATATTAATAATAATGCAAATATAT
1 TAAATA-AAT-ATACAAATAAATATATTAATAATAATACAAATACAT
* *
9001892 TAACA-AATTACACAAATAAATATATTAAT
1 TAA-ATAAATATACAAATAAATATATTAAT
9001921 CATGCAAACA
Statistics
Matches: 66, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
45 25 0.38
46 5 0.08
47 32 0.48
48 4 0.06
ACGTcount: A:0.57, C:0.08, G:0.02, T:0.33
Consensus pattern (45 bp):
TAAATAAATATACAAATAAATATATTAATAATAATACAAATACAT
Found at i:9001963 original size:16 final size:16
Alignment explanation
Indices: 9001909--9001982 Score: 51
Period size: 17 Copynumber: 4.2 Consensus size: 16
9001899 TTACACAAAT
*
9001909 AAATATATTAATCATGC
1 AAATAAATT-ATCATGC
* *
9001926 AAACAAATATATTA-GCC
1 AAATAAAT-TATCATG-C
9001943 AAATAAATTATCATGC
1 AAATAAATTATCATGC
9001959 AAATATCATATTAGTCATGC
1 AAATA--A-ATTA-TCATGC
9001979 AAAT
1 AAAT
9001983 TCATACAAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
16 11 0.24
17 18 0.40
18 2 0.04
19 4 0.09
20 10 0.22
ACGTcount: A:0.49, C:0.14, G:0.07, T:0.31
Consensus pattern (16 bp):
AAATAAATTATCATGC
Found at i:9001986 original size:19 final size:19
Alignment explanation
Indices: 9001949--9001987 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
9001939 AGCCAAATAA
9001949 ATTATCATGCAAATATCAT
1 ATTATCATGCAAATATCAT
9001968 ATTAGTCATGCAAAT-TCAT
1 ATTA-TCATGCAAATATCAT
9001987 A
1 A
9001988 CAAAAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.36
Consensus pattern (19 bp):
ATTATCATGCAAATATCAT
Found at i:9002641 original size:17 final size:16
Alignment explanation
Indices: 9002587--9002643 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 16
9002577 TTTAATTAAA
* *
9002587 AAAATAAAAATTAAAT
1 AAAATTAAAATAAAAT
* *
9002603 CAAAAGTTAAACTAAAAA
1 -AAAA-TTAAAATAAAAT
9002621 AAAATTAAAATACAAAT
1 AAAATTAAAATA-AAAT
9002638 AAAATT
1 AAAATT
9002644 TAAGATTTAC
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
16 7 0.22
17 17 0.53
18 8 0.25
ACGTcount: A:0.70, C:0.05, G:0.02, T:0.23
Consensus pattern (16 bp):
AAAATTAAAATAAAAT
Found at i:9002687 original size:19 final size:19
Alignment explanation
Indices: 9002643--9002688 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
9002633 CAAATAAAAT
* *
9002643 TTAAGATTTACTTTTTTGA
1 TTAAAATTTACTTTTTTAA
*
9002662 TCCAAAATTTACTTTTTTAA
1 T-TAAAATTTACTTTTTTAA
9002682 TTAAAAT
1 TTAAAAT
9002689 CTGATTATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.35, C:0.09, G:0.04, T:0.52
Consensus pattern (19 bp):
TTAAAATTTACTTTTTTAA
Found at i:9003295 original size:18 final size:19
Alignment explanation
Indices: 9003272--9003312 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
9003262 ATATAAAATT
9003272 TTATTTAAATAATTATAA-
1 TTATTTAAATAATTATAAC
**
9003290 TTATTTATGTAATTATAAC
1 TTATTTAAATAATTATAAC
9003309 TTAT
1 TTAT
9003313 ATGAACAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.54
Consensus pattern (19 bp):
TTATTTAAATAATTATAAC
Found at i:9003391 original size:14 final size:15
Alignment explanation
Indices: 9003372--9003400 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9003362 ATAATTATTT
9003372 TTATTC-AAATATAA
1 TTATTCAAAATATAA
9003386 TTATTCAAAATATAA
1 TTATTCAAAATATAA
9003401 ATAAAATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (15 bp):
TTATTCAAAATATAA
Found at i:9013067 original size:357 final size:354
Alignment explanation
Indices: 9012647--9013526 Score: 1167
Period size: 357 Copynumber: 2.5 Consensus size: 354
9012637 AAGGCGTTTT
* * * *
9012647 ATAATAAAAGACGTCTTTAATAA-TAAAAAATTTTTTTTTTTAAAATTATTAAAGGCGTTGTTAT
1 ATAATAAAAGACGCCTTTAATAATTAAAAAA-ATTTTTTTTAAAAATTATTAAAGGCATTGTTAT
* *
9012711 CTGCAA-CTACCTTTACTAATTATCTACAAACTGTGATAAGAATTATTAAAGGTGTCTTTTTTGG
65 CTGCAATC-GCCTTCACTAATTATCTACAAACTGTGATAAGAATTATTAAAGG-GTCTTTTTTGG
* * * *
9012775 ATATACGCCTTCAATAATCATGTTAGAATTTTTGTGACGGTATATAGAAGATATTTTACAGTAAA
128 ATATACGCCTTCAATAACCATGTTAAAATTTGTGTGACGGTATATAGAAGACATTTTACAGTAAA
* * * *
9012840 AAATGCATTTAATAACTCTCAAAATTTTTAGTGAGAAAATTTTAAAGGTGTCTGTTATTAATAAA
193 AAATGCATTTAATAACTCTCAAAATTTTTAGCGAAAAAATTTTAAAGGTGTCTATTATTAACAAA
*
9012905 CACCTTCAATAATGGATTACTAAGTTTAAAGGTATATTGAAGGTGCCTTTTCAAATAAACACCTT
258 CACCTTCAATAATAGATTACTAAGTTTAAAGGTATATTGAAGGTGCCTTTTCAAATAAACACCTT
* * *
9012970 CCATAACCATTGTGGTATATTGAATA-CGTGTC
323 CCATAACCATCGTGATATATTGAA-AGCATGTC
9013002 ATAATAAAAGACGCCTTTAATAATCTAAAAAAAGTTTTTTTTAAAAATTATTAAAGGCATTGTTA
1 ATAATAAAAGACGCCTTTAATAAT-TAAAAAAA-TTTTTTTTAAAAATTATTAAAGGCATTGTTA
* * * *
9013067 TCTGCAATCGCCTTCACTAATTATATACAAACAGTGATAAAAATTATTAAAGGCATCTTTTTTGG
64 TCTGCAATCGCCTTCACTAATTATCTACAAACTGTGATAAGAATTATTAAAGG-GTCTTTTTTGG
* * ** * * *
9013132 ATATACGCCTTTAATAACCGTGTTAAAATTTGTGTGGTGGTATATAGAAGGCATTTTACTGTAGA
128 ATATACGCCTTCAATAACCATGTTAAAATTTGTGTGACGGTATATAGAAGACATTTTACAGTAAA
* * * * *
9013197 AGATGCCTTTAATAATTTTCAAAATTTTTAGCGAAAAAATTTTGAAGGTGTCTATTATTAACAAA
193 AAATGCATTTAATAACTCTCAAAATTTTTAGCGAAAAAATTTTAAAGGTGTCTATTATTAACAAA
* * * ** *
9013262 TACTTTCAATAATAGATTACTAAGTTTAAAGGTATATTGAAGGTGCTTTTTTGAATAAACGCCTT
258 CACCTTCAATAATAGATTACTAAGTTTAAAGGTATATTGAAGGTGCCTTTTCAAATAAACACCTT
* *
9013327 TCATAACCATCGTGATATATTGAAAGCATTTC
323 CCATAACCATCGTGATATATTGAAAGCATGTC
* * *
9013359 ATAATAAAAGACGCCTTTAATAATT-CAAAAATTTTTTTTAAAAAAATTATTGAATGCATTGTTA
1 ATAATAAAAGACGCCTTTAATAATTAAAAAAATTTTTTTT--AAAAATTATTAAAGGCATTGTTA
* *
9013423 TCTGTAATCGCCTTCACTATTTATCTACAAACTGTGAT-AGAAATTATTAAAGGGATCTTTTTTG
64 TCTGCAATCGCCTTCACTAATTATCTACAAACTGTGATAAG-AATTATTAAAGGG-TCTTTTTTG
** * *
9013487 GATATACGCCTTCAATAACTGTGTTAAAAATTATGTGACG
127 GATATACGCCTTCAATAACCATGTTAAAATTTGTGTGACG
9013527 ATATGTTCAA
Statistics
Matches: 458, Mismatches: 58, Indels: 17
0.86 0.11 0.03
Matches are distributed among these distances:
354 8 0.02
355 28 0.06
356 112 0.24
357 309 0.67
358 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.38
Consensus pattern (354 bp):
ATAATAAAAGACGCCTTTAATAATTAAAAAAATTTTTTTTAAAAATTATTAAAGGCATTGTTATC
TGCAATCGCCTTCACTAATTATCTACAAACTGTGATAAGAATTATTAAAGGGTCTTTTTTGGATA
TACGCCTTCAATAACCATGTTAAAATTTGTGTGACGGTATATAGAAGACATTTTACAGTAAAAAA
TGCATTTAATAACTCTCAAAATTTTTAGCGAAAAAATTTTAAAGGTGTCTATTATTAACAAACAC
CTTCAATAATAGATTACTAAGTTTAAAGGTATATTGAAGGTGCCTTTTCAAATAAACACCTTCCA
TAACCATCGTGATATATTGAAAGCATGTC
Found at i:9026719 original size:20 final size:20
Alignment explanation
Indices: 9026694--9026732 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
9026684 TGATTTAAAT
9026694 TTTTTTATTGTTTTAATCTA
1 TTTTTTATTGTTTTAATCTA
9026714 TTTTTTATTGTTTTAATCT
1 TTTTTTATTGTTTTAATCT
9026733 CTTACGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.18, C:0.05, G:0.05, T:0.72
Consensus pattern (20 bp):
TTTTTTATTGTTTTAATCTA
Found at i:9027926 original size:20 final size:20
Alignment explanation
Indices: 9027873--9027947 Score: 75
Period size: 19 Copynumber: 3.8 Consensus size: 20
9027863 AAATAAAAAT
9027873 AAAAATTTTAAATAATTCT--
1 AAAAATTTTAAA-AATTCTAA
* * *
9027892 AAAAATCTAAAAAATTC-AT
1 AAAAATTTTAAAAATTCTAA
*
9027911 AAAATTTTTGAAAAATTCTAA
1 AAAAATTTT-AAAAATTCTAA
9027932 AAAAATTTTAAAAATT
1 AAAAATTTTAAAAATT
9027948 ATGACAAAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
18 5 0.11
19 16 0.36
20 15 0.33
21 9 0.20
ACGTcount: A:0.57, C:0.05, G:0.01, T:0.36
Consensus pattern (20 bp):
AAAAATTTTAAAAATTCTAA
Found at i:9027935 original size:10 final size:10
Alignment explanation
Indices: 9027873--9027977 Score: 56
Period size: 10 Copynumber: 10.4 Consensus size: 10
9027863 AAATAAAAAT
*
9027873 AAAAATTTTA
1 AAAAATTCTA
*
9027883 AATAATTCT-
1 AAAAATTCTA
9027892 AAAAA-TCTA
1 AAAAATTCTA
9027901 AAAAATTC-A
1 AAAAATTCTA
* * *
9027910 TAAAATTTTTG
1 -AAAAATTCTA
9027921 AAAAATTCTAA
1 AAAAATTCT-A
*
9027932 AAAAATT-TT
1 AAAAATTCTA
*
9027941 AAAAATTATGACA
1 AAAAATTCT---A
*
9027954 AAAAAATCTA
1 AAAAATTCTA
*
9027964 AAAAATTTTA
1 AAAAATTCTA
9027974 AAAA
1 AAAA
9027978 CAGTTAGGCA
Statistics
Matches: 71, Mismatches: 15, Indels: 18
0.68 0.14 0.17
Matches are distributed among these distances:
8 3 0.04
9 17 0.24
10 37 0.52
11 7 0.10
13 7 0.10
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.32
Consensus pattern (10 bp):
AAAAATTCTA
Found at i:9028742 original size:27 final size:27
Alignment explanation
Indices: 9028712--9028764 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
9028702 AGCACATAAT
*
9028712 CGAAAAAA-CAAGTAATTCATCAGCAAA
1 CGAAAAAATCAAG-AACTCATCAGCAAA
*
9028739 CGAAAAAATCGAGAACTCATCAGCAA
1 CGAAAAAATCAAGAACTCATCAGCAA
9028765 GGAACAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 20 0.87
28 3 0.13
ACGTcount: A:0.53, C:0.21, G:0.13, T:0.13
Consensus pattern (27 bp):
CGAAAAAATCAAGAACTCATCAGCAAA
Found at i:9029075 original size:10 final size:10
Alignment explanation
Indices: 9029060--9029396 Score: 65
Period size: 10 Copynumber: 33.9 Consensus size: 10
9029050 CATTTTAGAA
9029060 TTTTTAAAAT
1 TTTTTAAAAT
*
9029070 TTTTTAAAAA
1 TTTTTAAAAT
*
9029080 ATTTTAAAAT
1 TTTTTAAAAT
* *
9029090 AATTTT-AGAT
1 -TTTTTAAAAT
*
9029100 ATTTT--AAT
1 TTTTTAAAAT
9029108 TTTTTAAAATTT
1 TTTTTAAAA--T
*
9029120 ATATTTTAAAAAA
1 -T-TTTT-AAAAT
* *
9029133 ATTTTAGAAT
1 TTTTTAAAAT
*
9029143 TTTTTGAAAT
1 TTTTTAAAAT
*
9029153 CTTTTAAAAT
1 TTTTTAAAAT
*
9029163 TTTTT--ATT
1 TTTTTAAAAT
*
9029171 TTTTTAGAA-
1 TTTTTAAAAT
*
9029180 -TTTTAAATTT
1 TTTTTAAA-AT
*
9029190 TTTTTAGAA-
1 TTTTTAAAAT
*
9029199 -TTTT-AATT
1 TTTTTAAAAT
*
9029207 TTTTTAGAAT
1 TTTTTAAAAT
**
9029217 TTTTATAATTT
1 TTTT-TAAAAT
***
9029228 TTTTTTGCAT
1 TTTTTAAAAT
*
9029238 TTTTCAAAA-
1 TTTTTAAAAT
*
9029247 ATTTTAAGAAT
1 TTTTTAA-AAT
*
9029258 TTTTTAGAAT
1 TTTTTAAAAT
**
9029268 TTTCCAATAA-
1 TTTTTAA-AAT
*
9029278 TTTTTAGAAT
1 TTTTTAAAAT
**
9029288 TTTTTATTA-
1 TTTTTAAAAT
* *
9029297 TTTTAAAAAA
1 TTTTTAAAAT
* *
9029307 ATTTTATAAT
1 TTTTTAAAAT
* *
9029317 TTTTATAGAGT
1 TTTT-TAAAAT
*
9029328 TTTTCAAAAT
1 TTTTTAAAAT
**
9029338 TTTTTGGAAT
1 TTTTTAAAAT
9029348 TTTTTAGAAA-
1 TTTTTA-AAAT
* *
9029358 -ATTTCAAAT
1 TTTTTAAAAT
* *
9029367 ATTTTAAGAT
1 TTTTTAAAAT
*
9029377 TTTTTAAAGAA
1 TTTTTAAA-AT
9029388 TTTTTAAAA
1 TTTTTAAAA
9029397 ATATTTTTGA
Statistics
Matches: 225, Mismatches: 75, Indels: 54
0.64 0.21 0.15
Matches are distributed among these distances:
7 1 0.00
8 26 0.12
9 25 0.11
10 115 0.51
11 48 0.21
12 1 0.00
13 1 0.00
14 4 0.02
15 4 0.02
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (10 bp):
TTTTTAAAAT
Found at i:9029136 original size:42 final size:44
Alignment explanation
Indices: 9029051--9029164 Score: 125
Period size: 42 Copynumber: 2.7 Consensus size: 44
9029041 AAGCGGTGGC
* *
9029051 ATTTTAGAAT-TTTTAAAATTTTTTAAAA---A-ATTTTAAAATA
1 ATTTTAGAATATTTT-AAATCTTTTAAAATTTATATTTTAAAAAA
*
9029091 ATTTTAG-ATATTTT-AATTTTTTAAAATTTATATTTTAAAAAA
1 ATTTTAGAATATTTTAAATCTTTTAAAATTTATATTTTAAAAAA
*
9029133 ATTTTAGAATTTTTTGAAATCTTTTAAAATTT
1 ATTTTAGAATATTTT-AAATCTTTTAAAATTT
9029165 TTTATTTTTT
Statistics
Matches: 63, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
38 12 0.19
39 2 0.03
40 11 0.17
41 1 0.02
42 17 0.27
43 6 0.10
45 14 0.22
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.54
Consensus pattern (44 bp):
ATTTTAGAATATTTTAAATCTTTTAAAATTTATATTTTAAAAAA
Found at i:9029175 original size:18 final size:18
Alignment explanation
Indices: 9029134--9029231 Score: 99
Period size: 18 Copynumber: 5.2 Consensus size: 18
9029124 TTTAAAAAAA
* *
9029134 TTTTAGAATTTTTTGAAATC
1 TTTTAGAA-TTTTT-AATTT
* *
9029154 TTTTAAAATTTTTTATTT
1 TTTTAGAATTTTTAATTT
*
9029172 TTTTAGAATTTTAAATTTT
1 TTTTAGAATTTTTAA-TTT
9029191 TTTTAGAA-TTTTAATTT
1 TTTTAGAATTTTTAATTT
9029208 TTTTAGAATTTTTATAATTT
1 TTTTAGAA-TTTT-TAATTT
9029228 TTTT
1 TTTT
9029232 TTGCATTTTT
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
17 11 0.17
18 19 0.29
19 19 0.29
20 17 0.26
ACGTcount: A:0.29, C:0.01, G:0.05, T:0.65
Consensus pattern (18 bp):
TTTTAGAATTTTTAATTT
Found at i:9029183 original size:17 final size:17
Alignment explanation
Indices: 9029163--9029219 Score: 87
Period size: 17 Copynumber: 3.2 Consensus size: 17
9029153 CTTTTAAAAT
*
9029163 TTTTTATTTTTTTAGAA
1 TTTTAATTTTTTTAGAA
9029180 TTTTAAATTTTTTTTAGAA
1 TTTT-AA-TTTTTTTAGAA
9029199 TTTTAATTTTTTTAGAA
1 TTTTAATTTTTTTAGAA
9029216 TTTT
1 TTTT
9029220 TATAATTTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
17 19 0.51
18 3 0.08
19 15 0.41
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.68
Consensus pattern (17 bp):
TTTTAATTTTTTTAGAA
Found at i:9029228 original size:17 final size:17
Alignment explanation
Indices: 9029172--9029228 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
9029162 TTTTTTATTT
**
9029172 TTTTAGAATTTTAAATTTT
1 TTTTAGAATTTT-AA-TAA
**
9029191 TTTTAGAATTTTAATTT
1 TTTTAGAATTTTAATAA
*
9029208 TTTTAGAATTTTTATAA
1 TTTTAGAATTTTAATAA
9029225 TTTT
1 TTTT
9029229 TTTTTGCATT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
17 21 0.60
18 2 0.06
19 12 0.34
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (17 bp):
TTTTAGAATTTTAATAA
Found at i:9029261 original size:30 final size:30
Alignment explanation
Indices: 9029227--9029398 Score: 143
Period size: 30 Copynumber: 5.7 Consensus size: 30
9029217 TTTTATAATT
* *
9029227 TTTTTTTGCATTTTTCAAAAATTTTAAGAA
1 TTTTTTAGAATTTTTCAAAAATTTTAAGAA
* * *
9029257 TTTTTTAGAATTTTCCAATAATTTTTAGAA
1 TTTTTTAGAATTTTTCAAAAATTTTAAGAA
** ** *
9029287 TTTTTTATTATTTTAAAAAAATTTT-ATAA
1 TTTTTTAGAATTTTTCAAAAATTTTAAGAA
* * **
9029316 TTTTTATAGAGTTTTTCAAAATTTTTTGGAA
1 TTTTT-TAGAATTTTTCAAAAATTTTAAGAA
** *
9029347 TTTTTTAGAAAATTTCAAATATTTTAAG-A
1 TTTTTTAGAATTTTTCAAAAATTTTAAGAA
9029376 TTTTTTAAAGAATTTTT-AAAAAT
1 TTTTTT--AGAATTTTTCAAAAAT
9029399 ATTTTTGAAT
Statistics
Matches: 109, Mismatches: 29, Indels: 8
0.75 0.20 0.05
Matches are distributed among these distances:
29 15 0.14
30 80 0.73
31 14 0.13
ACGTcount: A:0.37, C:0.03, G:0.06, T:0.53
Consensus pattern (30 bp):
TTTTTTAGAATTTTTCAAAAATTTTAAGAA
Found at i:9029307 original size:60 final size:60
Alignment explanation
Indices: 9029214--9029353 Score: 158
Period size: 60 Copynumber: 2.3 Consensus size: 60
9029204 ATTTTTTTAG
* * **
9029214 AATTTTTATAATTTTTTTTTGCATTTTTCAAAAATTTTAAGAATTTTT-TAGAATTTTCCAA
1 AATTTTTAGAATTTTTTATT-CATTTTAAAAAAATTTT-AGAATTTTTATAGAATTTTCCAA
* * *
9029275 TAATTTTTAGAATTTTTTATT-ATTTTAAAAAAATTTTATAATTTTTATAGAGTTTTTCAA
1 -AATTTTTAGAATTTTTTATTCATTTTAAAAAAATTTTAGAATTTTTATAGAATTTTCCAA
*
9029335 AATTTTTTGGAATTTTTTA
1 AA-TTTTTAGAATTTTTTA
9029354 GAAAATTTCA
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
59 10 0.15
60 40 0.59
62 18 0.26
ACGTcount: A:0.34, C:0.04, G:0.06, T:0.57
Consensus pattern (60 bp):
AATTTTTAGAATTTTTTATTCATTTTAAAAAAATTTTAGAATTTTTATAGAATTTTCCAA
Found at i:9031671 original size:26 final size:26
Alignment explanation
Indices: 9031633--9031711 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
9031623 AGGGTATAAT
*
9031633 TAGAACCCATTAAAATTTTAAGTTAA
1 TAGAACCCCTTAAAATTTTAAGTTAA
9031659 TAGAACCCCTTAAAATTTTAAGTTAA
1 TAGAACCCCTTAAAATTTTAAGTTAA
9031685 TAGAACCCCTTAAAATTTTAAGTTAA
1 TAGAACCCCTTAAAATTTTAAGTTAA
9031711 T
1 T
9031712 TCAATTTTCT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.43, C:0.14, G:0.08, T:0.35
Consensus pattern (26 bp):
TAGAACCCCTTAAAATTTTAAGTTAA
Found at i:9032132 original size:6 final size:6
Alignment explanation
Indices: 9032121--9032163 Score: 68
Period size: 6 Copynumber: 7.2 Consensus size: 6
9032111 TTCTCTTGTT
* *
9032121 TATATG TATATG TATATG TATATG TATATG TTTATA TATATG T
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG T
9032164 GTGTATACGT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (6 bp):
TATATG
Found at i:9032170 original size:12 final size:12
Alignment explanation
Indices: 9032121--9032186 Score: 53
Period size: 12 Copynumber: 5.4 Consensus size: 12
9032111 TTCTCTTGTT
* *
9032121 TATATGTATATG
1 TATATGTGTATA
* *
9032133 TATATGTATATG
1 TATATGTGTATA
*
9032145 TATATGTTTATA
1 TATATGTGTATA
*
9032157 TATATGTGTGTA
1 TATATGTGTATA
9032169 TACGTAT-TGTATA
1 TA--TATGTGTATA
9032182 TATAT
1 TATAT
9032187 ACACATATAT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
11 3 0.06
12 34 0.72
13 7 0.15
14 3 0.06
ACGTcount: A:0.32, C:0.02, G:0.15, T:0.52
Consensus pattern (12 bp):
TATATGTGTATA
Found at i:9032196 original size:12 final size:12
Alignment explanation
Indices: 9032178--9032221 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
9032168 ATACGTATTG
9032178 TATATATATAC-
1 TATATATATACA
*
9032189 -ACATATATACA
1 TATATATATACA
*
9032200 TACATATATACA
1 TATATATATACA
9032212 TATATATATA
1 TATATATATA
9032222 TATGTTTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
10 9 0.31
12 20 0.69
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (12 bp):
TATATATATACA
Found at i:9032511 original size:44 final size:44
Alignment explanation
Indices: 9032447--9032533 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 44
9032437 ATATGTGGTA
*
9032447 GTTGTCTTAGTCACACGGCAATGCATGAAAATTAATGTTGAATG
1 GTTGTCTTAGTCACACGGCAAAGCATGAAAATTAATGTTGAATG
*
9032491 GTTGTCTTAGTCACATGGCAAAGCATGAAAATTAATGTTGAAT
1 GTTGTCTTAGTCACACGGCAAAGCATGAAAATTAATGTTGAAT
9032534 TGATGCTCAC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.32
Consensus pattern (44 bp):
GTTGTCTTAGTCACACGGCAAAGCATGAAAATTAATGTTGAATG
Found at i:9032551 original size:44 final size:44
Alignment explanation
Indices: 9032457--9032551 Score: 111
Period size: 44 Copynumber: 2.2 Consensus size: 44
9032447 GTTGTCTTAG
* * * * *
9032457 TCACACGGCAATGCATGAAAATTAATGTTGAATGGTTGTCTTAG
1 TCACATGGCAAAGCATGAAAATTAATGTTGAATGGATGTCTCAA
*
9032501 TCACATGGCAAAGCATGAAAATTAATGTTGAATTGATG-CTCACA
1 TCACATGGCAAAGCATGAAAATTAATGTTGAATGGATGTCTCA-A
*
9032545 TGACATG
1 TCACATG
9032552 CTAAATTAGT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 3 0.07
44 40 0.93
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (44 bp):
TCACATGGCAAAGCATGAAAATTAATGTTGAATGGATGTCTCAA
Found at i:9033588 original size:93 final size:93
Alignment explanation
Indices: 9033429--9033618 Score: 317
Period size: 93 Copynumber: 2.0 Consensus size: 93
9033419 AGCTTTGCCC
*
9033429 TTTCCAAACTTATGACGAATCTGTCTTTGGAATCGCCAATAGTACATCCAACAAAGCAATACCGG
1 TTTCCAAACTTATGACGAATCTGTCTTCGGAATCGCCAATAGTACATCCAACAAAGCAATACCGG
*
9033494 ATATATCTCCGGTTTCCTTCCGCCAAAT
66 ATAGATCTCCGGTTTCCTTCCGCCAAAT
* * *
9033522 TTTCCAAATTTATGACGAATCTGTCTTCGGAGTCGCCAATAGTACATCCAACGAAGCAATACCGG
1 TTTCCAAACTTATGACGAATCTGTCTTCGGAATCGCCAATAGTACATCCAACAAAGCAATACCGG
* *
9033587 ATAGATCTCCGGTTTCCTTCTGCCAGAT
66 ATAGATCTCCGGTTTCCTTCCGCCAAAT
9033615 TTTC
1 TTTC
9033619 ATTTTCAAAT
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 90 1.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (93 bp):
TTTCCAAACTTATGACGAATCTGTCTTCGGAATCGCCAATAGTACATCCAACAAAGCAATACCGG
ATAGATCTCCGGTTTCCTTCCGCCAAAT
Found at i:9037393 original size:19 final size:19
Alignment explanation
Indices: 9037358--9037397 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
9037348 CTTTATAAGG
*
9037358 TTTTCTTTTATTATTTTTT
1 TTTTCTTTTAGTATTTTTT
9037377 TTTTCTTTTAAGT-TTTTTT
1 TTTTCTTTT-AGTATTTTTT
9037396 TT
1 TT
9037398 AGTTTAAGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 17 0.89
20 2 0.11
ACGTcount: A:0.10, C:0.05, G:0.03, T:0.82
Consensus pattern (19 bp):
TTTTCTTTTAGTATTTTTT
Found at i:9037403 original size:17 final size:17
Alignment explanation
Indices: 9037372--9037405 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
9037362 CTTTTATTAT
**
9037372 TTTTTTTTTCTTTTAAG
1 TTTTTTTTTAGTTTAAG
9037389 TTTTTTTTTAGTTTAAG
1 TTTTTTTTTAGTTTAAG
9037406 GCTTGCGGTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.03, G:0.09, T:0.74
Consensus pattern (17 bp):
TTTTTTTTTAGTTTAAG
Found at i:9037605 original size:17 final size:17
Alignment explanation
Indices: 9037571--9037605 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
9037561 AAGGTTAAAC
* *
9037571 TTTTTAATTTTTTGTTT
1 TTTTTAATTTGTTATTT
9037588 TTTTTAATTTGTTATTT
1 TTTTTAATTTGTTATTT
9037605 T
1 T
9037606 AATTTAATCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.14, C:0.00, G:0.06, T:0.80
Consensus pattern (17 bp):
TTTTTAATTTGTTATTT
Found at i:9044067 original size:16 final size:17
Alignment explanation
Indices: 9044035--9044067 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
9044025 TAAAAATATT
*
9044035 AAATTAAAAATTATAAA
1 AAATAAAAAATTATAAA
9044052 AAATAAAAAATT-TAAA
1 AAATAAAAAATTATAAA
9044068 TATTTAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (17 bp):
AAATAAAAAATTATAAA
Found at i:9046433 original size:13 final size:13
Alignment explanation
Indices: 9046415--9046448 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
9046405 TTTGATTTAG
9046415 ATTAAATTTATAT
1 ATTAAATTTATAT
*
9046428 ATTAAATGTATAT
1 ATTAAATTTATAT
9046441 ATTAAATT
1 ATTAAATT
9046449 CAAGTTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (13 bp):
ATTAAATTTATAT
Found at i:9047660 original size:14 final size:13
Alignment explanation
Indices: 9047643--9047686 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
9047633 ATAATAATAT
9047643 AAAAAAATACAAA
1 AAAAAAATACAAA
*
9047656 TAAAAAAAGACAAA
1 -AAAAAAATACAAA
*
9047670 CAAAAAATACAAA
1 AAAAAAATACAAA
9047683 AAAA
1 AAAA
9047687 GTAAAAAGCA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
13 14 0.54
14 12 0.46
ACGTcount: A:0.82, C:0.09, G:0.02, T:0.07
Consensus pattern (13 bp):
AAAAAAATACAAA
Found at i:9048682 original size:18 final size:17
Alignment explanation
Indices: 9048656--9048689 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
9048646 AAAAATTTTA
9048656 TTTTTATTTTTTTAAAT
1 TTTTTATTTTTTTAAAT
9048673 TTTTTGATTTTTTTAAA
1 TTTTT-ATTTTTTTAAA
9048690 ATACTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (17 bp):
TTTTTATTTTTTTAAAT
Found at i:9049051 original size:18 final size:17
Alignment explanation
Indices: 9049015--9049053 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
9049005 TATAAAATAG
**
9049015 TAAATAATAATAATTAA
1 TAAATAATAATAAGCAA
9049032 TAAATTAATAATAAGCAA
1 TAAA-TAATAATAAGCAA
9049050 TAAA
1 TAAA
9049054 AAAATGAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (17 bp):
TAAATAATAATAAGCAA
Found at i:9050493 original size:22 final size:22
Alignment explanation
Indices: 9050462--9050511 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
9050452 TGTGTGTAAC
9050462 AAAAAACACAAA-CAAAAAATAA
1 AAAAAACACAAAGCAAAAAA-AA
*
9050484 AAAAATCACAAAGCAAAAAAAA
1 AAAAAACACAAAGCAAAAAAAA
9050506 AAAAAA
1 AAAAAA
9050512 AGGCTTTTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 18 0.72
23 7 0.28
ACGTcount: A:0.82, C:0.12, G:0.02, T:0.04
Consensus pattern (22 bp):
AAAAAACACAAAGCAAAAAAAA
Found at i:9055093 original size:35 final size:35
Alignment explanation
Indices: 9055006--9055093 Score: 140
Period size: 35 Copynumber: 2.5 Consensus size: 35
9054996 GTATTTTTTT
*
9055006 GAAAAGATATTTGCATTTCATATGCATCATTTTAA
1 GAAAAGATATTTGTATTTCATATGCATCATTTTAA
* *
9055041 GAAAAGATATTTGTATTTCATGTGCATCATTTTAG
1 GAAAAGATATTTGTATTTCATATGCATCATTTTAA
*
9055076 GAAAAGATATTTATATTT
1 GAAAAGATATTTGTATTT
9055094 GCATCCTTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 49 1.00
ACGTcount: A:0.36, C:0.08, G:0.14, T:0.42
Consensus pattern (35 bp):
GAAAAGATATTTGTATTTCATATGCATCATTTTAA
Found at i:9055116 original size:33 final size:34
Alignment explanation
Indices: 9055006--9055120 Score: 117
Period size: 35 Copynumber: 3.4 Consensus size: 34
9054996 GTATTTTTTT
** *
9055006 GAAAAGATATTTGCATTTCATATGCATCATTTTAA
1 GAAAAGATATTTATATTTCA-GTGCATCATTTTAA
* *
9055041 GAAAAGATATTTGTATTTCATGTGCATCATTTTAG
1 GAAAAGATATTTATATTTCA-GTGCATCATTTTAA
* *
9055076 GAAAAGATATTTATATTTGCA-T-CCTTATTTTAA
1 GAAAAGATATTTATATTT-CAGTGCATCATTTTAA
*
9055109 GAGAAGATATTT
1 GAAAAGATATTT
9055121 GCATCATAAT
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
33 19 0.27
34 1 0.01
35 49 0.69
36 2 0.03
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.42
Consensus pattern (34 bp):
GAAAAGATATTTATATTTCAGTGCATCATTTTAA
Found at i:9055626 original size:43 final size:43
Alignment explanation
Indices: 9055510--9055641 Score: 153
Period size: 43 Copynumber: 3.1 Consensus size: 43
9055500 GTCATTTGCA
* * *
9055510 TTTTCTCGATGGTGATATCTAAGTATTAAGATTTAAATT-GATC
1 TTTT-TCGATGGTGATATCTGAGTATTAAGATTTGAATTACATC
* * * * *
9055553 TTTTTAG-TGGTAATAT-TCGAGTGTTGAGATTTGAATTACATT
1 TTTTTCGATGGTGATATCT-GAGTATTAAGATTTGAATTACATC
9055595 TTTTTCGATGGTGATATCTGAGTATTAAGATTTGAATTACATC
1 TTTTTCGATGGTGATATCTGAGTATTAAGATTTGAATTACATC
9055638 TTTT
1 TTTT
9055642 CGGTGATGCT
Statistics
Matches: 72, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
40 1 0.01
41 23 0.32
42 10 0.14
43 37 0.51
44 1 0.01
ACGTcount: A:0.27, C:0.08, G:0.18, T:0.47
Consensus pattern (43 bp):
TTTTTCGATGGTGATATCTGAGTATTAAGATTTGAATTACATC
Found at i:9055670 original size:84 final size:86
Alignment explanation
Indices: 9055510--9055726 Score: 192
Period size: 84 Copynumber: 2.5 Consensus size: 86
9055500 GTCATTTGCA
* * * * * * * *
9055510 TTTTCTCGATGGTGATATCTAAGTATTAAGATTTAAATT-GATCTTTTTAGTGGTAATATTCGAG
1 TTTTTTCGATGGTGATATCTGAGTATTAAGATTTGAATTACATCTTTTCAGTGATAATATCCAAG
*
9055574 TGTTGAGATTTGAA-TTACAT
66 TGTTGAAATTTGAATTTACAT
* **
9055594 TTTTTTCGATGGTGATATCTGAGTATTAAGATTTGAATTACATCTTTTCGGTGATGCTATCCAAG
1 TTTTTTCGATGGTGATATCTGAGTATTAAGATTTGAATTACATCTTTTCAGTGATAATATCCAAG
*
9055659 T-TT-AAATTTTGAATTTGCAT
66 TGTTGAAA-TTTGAATTTACAT
* * *
9055679 TTGCATTATCTTGATGGTGATATTTGAGTATTAA-AGCTTGAATTACAT
1 TT---TT-T-TCGATGGTGATATCTGAGTATTAAGA-TTTGAATTACAT
9055727 TTTCTCAATG
Statistics
Matches: 108, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
83 2 0.02
84 44 0.41
85 25 0.23
88 2 0.02
89 2 0.02
90 33 0.31
ACGTcount: A:0.28, C:0.09, G:0.18, T:0.45
Consensus pattern (86 bp):
TTTTTTCGATGGTGATATCTGAGTATTAAGATTTGAATTACATCTTTTCAGTGATAATATCCAAG
TGTTGAAATTTGAATTTACAT
Found at i:9055849 original size:49 final size:48
Alignment explanation
Indices: 9055796--9056114 Score: 134
Period size: 49 Copynumber: 6.7 Consensus size: 48
9055786 TTTTGGTGGC
*
9055796 GATATCTGAGTTTTAAATTTTGAATTTGCATTTGCATTCTCTCGATGGT
1 GATATCTGAGTTTTAAAGTTTGAATTTGCATTTGCATTCTCT-GATGGT
** *** * *
9055845 GATAT-TCGAGTTTCTTTCAGTGACAATATCCGAAGTCATTTGCA-TCTTGTTGATGGT
1 GATATCT-GAG-TT-TTAAAGTTTGAAT-T----TG-CATTTGCATTC-T-CTGATGGT
* *
9055902 GATATCTGAGTTTTAAAGTTTAAATTTGCATTTGCATTCTCTTAGTGGT
1 GATATCTGAGTTTTAAAGTTTGAATTTGCATTTGCATTCTCTGA-TGGT
* * *
9055951 GATATCTGAGTATTAAAGCTTGAA-TTACATTT---TT-TC-GATGGT
1 GATATCTGAGTTTTAAAGTTTGAATTTGCATTTGCATTCTCTGATGGT
* * * *
9055993 GATATTTGAGTATT-AAGATTTGAA-TTGCA--T-C-TTGT-TGGTGGT
1 GATATCTGAGTTTTAAAG-TTTGAATTTGCATTTGCATTCTCTGATGGT
** * * * *
9056035 GATATCCAAG-TTTAAATTTTGAATTTGCATTTGTATTTTCTTAGTGGT
1 GATATCTGAGTTTTAAAGTTTGAATTTGCATTTGCATTCTCTGA-TGGT
* **
9056083 GATAT-TCGAGTATTAAAACTTGAA-TTGCATTT
1 GATATCT-GAGTTTTAAAGTTTGAATTTGCATTT
9056115 TTTTTATGGT
Statistics
Matches: 203, Mismatches: 39, Indels: 57
0.68 0.13 0.19
Matches are distributed among these distances:
40 1 0.00
41 13 0.06
42 46 0.23
43 1 0.00
44 3 0.01
45 2 0.01
46 3 0.01
47 1 0.00
48 29 0.14
49 52 0.26
50 5 0.02
51 7 0.03
52 1 0.00
54 1 0.00
55 8 0.04
56 5 0.02
57 23 0.11
58 2 0.01
ACGTcount: A:0.25, C:0.10, G:0.19, T:0.45
Consensus pattern (48 bp):
GATATCTGAGTTTTAAAGTTTGAATTTGCATTTGCATTCTCTGATGGT
Found at i:9055882 original size:106 final size:106
Alignment explanation
Indices: 9055724--9055955 Score: 338
Period size: 106 Copynumber: 2.2 Consensus size: 106
9055714 GCTTGAATTA
* * ** * *
9055724 CATTTTCTCAATGGTGATATTCGAGTTTCCTTCGGTGGTAATATCCGGAGTCATTTGCATCTTTT
1 CATTCTCTCAATGGTGATATTCGAGTTTCCTTCAGTGACAATATCCGAAGTCATTTGCATCTTGT
* * *
9055789 TGGTGGCGATATCTGAGTTTTAAATTTTGAATTTGCATTTG
66 TGATGGCGATATCTGAGTTTTAAAGTTTAAATTTGCATTTG
* *
9055830 CATTCTCTCGATGGTGATATTCGAGTTTCTTTCAGTGACAATATCCGAAGTCATTTGCATCTTGT
1 CATTCTCTCAATGGTGATATTCGAGTTTCCTTCAGTGACAATATCCGAAGTCATTTGCATCTTGT
*
9055895 TGATGGTGATATCTGAGTTTTAAAGTTTAAATTTGCATTTG
66 TGATGGCGATATCTGAGTTTTAAAGTTTAAATTTGCATTTG
* *
9055936 CATTCTCTTAGTGGTGATAT
1 CATTCTCTCAATGGTGATAT
9055956 CTGAGTATTA
Statistics
Matches: 111, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
106 111 1.00
ACGTcount: A:0.22, C:0.14, G:0.21, T:0.44
Consensus pattern (106 bp):
CATTCTCTCAATGGTGATATTCGAGTTTCCTTCAGTGACAATATCCGAAGTCATTTGCATCTTGT
TGATGGCGATATCTGAGTTTTAAAGTTTAAATTTGCATTTG
Found at i:9056043 original size:386 final size:382
Alignment explanation
Indices: 9055583--9056590 Score: 1322
Period size: 386 Copynumber: 2.6 Consensus size: 382
9055573 GTGTTGAGAT
* *
9055583 TTGAATTACATTTTTTTCGATGGTGATATCTGAGTATTAAGATTTGAATTACATCTTTTCGGTGA
1 TTGAATTACA-TTTTTTCGATGGTGATATTTGAGTATTAAGATTTGAATTACATCTTTT-GGTGG
* *
9055648 TGCTATCCAAGTTTAAATTTTGAATTTGCATTTGCATTATCTTGATGGTGATATTTGAGTATTAA
64 TGATATCCAAGTTTAAATTTTGAATTTGCATTTGCATT-TCTTGATGGTGATATTCGAGTATTAA
* *
9055713 AGCTTGAATTACATTTTCTCAATGGTGATATTCGAGTTTCCTTCGGTGGTAATATCCGGAGTCAT
128 AGCTTGAATTACATTTTCTCAATGGTGATATTCGAGTTTCCTTCGGTGGCAATATCCGAAGTCAT
* * *
9055778 TTGCATCTTTTTGGTGGCGATATCTGAGTTTTAAATTTTGAATTTGCATTTGCATTCTCTCGATG
193 TTGCATCTTTTCGGTGGCGATATCCGAG-TTTAAAGTTTGAATTTGCATTTGCATTCTCTCGATG
* * *
9055843 GTGATATTCGAG-TTTCTTTCAGTGACAATATCCGAAGTCATTTGCATCTTGTTGATGGTGATA-
257 GTGATATTCAAGTTTTC-TTCAGTGACAATATCCGAAGTCATTTGCATCTTCTCGATGGTGATAT
*
9055906 TCTGAGTTTTAAAGTTTAAATTTGCATTTGCATTCTCTTAG-TGGTGATATCTGAGTATTAAAGC
321 TC-GAG-TTTAAAGTTTAAATTTGCATTTGCATTCTC-TAGATGGTGATATCCGAGTATTAAAGC
*
9055970 TTGAATTACATTTTTTCGATGGTGATATTTGAGTATTAAGATTTGAATTGCATCTTGTTGGTGGT
1 TTGAATTACATTTTTTCGATGGTGATATTTGAGTATTAAGATTTGAATTACATCTT-TTGGTGGT
*
9056035 GATATCCAAGTTTAAATTTTGAATTTGCATTTGTATTTTCTT-AGTGGTGATATTCGAGTATTAA
65 GATATCCAAGTTTAAATTTTGAATTTGCATTTGCA-TTTCTTGA-TGGTGATATTCGAGTATTAA
* * * ** *
9056099 AACTTGAATTGCATTTTTTTTATGGTGATATTCGAGTTTCCTTCGGTGACAATATCCGAAGTCAT
128 AGCTTGAATTACATTTTCTCAATGGTGATATTCGAGTTTCCTTCGGTGGCAATATCCGAAGTCAT
* *
9056164 TTGCATCTTTTCGGTGGTGATATCCGAGTTTAAAGTTTGAATTTGCATTTGTATTCTCTCGATGG
193 TTGCATCTTTTCGGTGGCGATATCCGAGTTTAAAGTTTGAATTTGCATTTGCATTCTCTCGATGG
* ** * *
9056229 TGATATTCAAGTTTTCTTCGGTGATGATATCTGAAGTCATTTGCATCTTCTCGGTGGTGATATTC
258 TGATATTCAAGTTTTCTTCAGTGACAATATCCGAAGTCATTTGCATCTTCTCGATGGTGATATTC
* * *
9056294 GAGTTTAAAGTTTGAATTTGTATTTGCATTCTCTCGATGGTGATATCCGAGTATTAAAGC
323 GAGTTTAAAGTTTAAATTTGCATTTGCATTCTCTAGATGGTGATATCCGAGTATTAAAGC
* * *
9056354 TTGAATTACATTTTCTCGATGGTGATATTTGAGTTCCCTTTAGTGGCGATATCTGAAAATATTTA
1 TTGAATTACATTTTTTCGATGGTGATATTTGAG-T---ATTA----AGAT-T-TG---A-A-TTA
** * * *
9056419 CATCTTCTCAGTGGTGATATCCGAGTTTAAAGTTTGAATTTGCATTTGCATTTCCTCGATGGTGA
51 CATCTT-TTGGTGGTGATATCCAAGTTTAAATTTTGAATTTGCATTTGCATTT-CTTGATGGTGA
* * * *
9056484 TATCCGAGTATTAAAGCTTAAATTACATTTTCTCGATGGTGATATTCGAGTTTCCTTCGATGGCA
114 TATTCGAGTATTAAAGCTTGAATTACATTTTCTCAATGGTGATATTCGAGTTTCCTTCGGTGGCA
* * *
9056549 ATATCCGAAGTCATTTGCATCTTCTCAGTGGTGATATCCGAG
179 ATATCCGAAGTCATTTGCATCTTTTCGGTGGCGATATCCGAG
9056591 ATTATTTATC
Statistics
Matches: 545, Mismatches: 53, Indels: 34
0.86 0.08 0.05
Matches are distributed among these distances:
383 2 0.00
384 82 0.15
385 89 0.16
386 193 0.35
387 14 0.03
388 3 0.01
392 3 0.01
393 1 0.00
394 2 0.00
397 1 0.00
398 4 0.01
399 150 0.28
400 1 0.00
ACGTcount: A:0.24, C:0.13, G:0.20, T:0.43
Consensus pattern (382 bp):
TTGAATTACATTTTTTCGATGGTGATATTTGAGTATTAAGATTTGAATTACATCTTTTGGTGGTG
ATATCCAAGTTTAAATTTTGAATTTGCATTTGCATTTCTTGATGGTGATATTCGAGTATTAAAGC
TTGAATTACATTTTCTCAATGGTGATATTCGAGTTTCCTTCGGTGGCAATATCCGAAGTCATTTG
CATCTTTTCGGTGGCGATATCCGAGTTTAAAGTTTGAATTTGCATTTGCATTCTCTCGATGGTGA
TATTCAAGTTTTCTTCAGTGACAATATCCGAAGTCATTTGCATCTTCTCGATGGTGATATTCGAG
TTTAAAGTTTAAATTTGCATTTGCATTCTCTAGATGGTGATATCCGAGTATTAAAGC
Found at i:9056124 original size:132 final size:133
Alignment explanation
Indices: 9055884--9056135 Score: 373
Period size: 132 Copynumber: 1.9 Consensus size: 133
9055874 CCGAAGTCAT
**
9055884 TTGCATCTTGTTGATGGTGATATCTGAGTTTTAAAGTTTAAATTTGCATTTGCATTCTCTTAGTG
1 TTGCATCTTGTTGATGGTGATATCCAAGTTTTAAAGTTTAAATTTGCATTTGCATTCTCTTAGTG
* *
9055949 GTGATATCTGAGTATTAAAGCTTGAATTACATTTTTTCGATGGTGATATTTGAGTATTAAGATTT
66 GTGATATCTGAGTATTAAAACTTGAATTACATTTTTTCGATGGTGATATTCGAGTATTAAGATTT
9056014 GAA
131 GAA
* * * * *
9056017 TTGCATCTTGTTGGTGGTGATATCCAAG-TTTAAATTTTGAATTTGCATTTGTATTTTCTTAGTG
1 TTGCATCTTGTTGATGGTGATATCCAAGTTTTAAAGTTTAAATTTGCATTTGCATTCTCTTAGTG
* **
9056081 GTGATAT-TCGAGTATTAAAACTTGAATTGCATTTTTTTTATGGTGATATTCGAGT
66 GTGATATCT-GAGTATTAAAACTTGAATTACATTTTTTCGATGGTGATATTCGAGT
9056136 TTCCTTCGGT
Statistics
Matches: 106, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
131 1 0.01
132 80 0.75
133 25 0.24
ACGTcount: A:0.25, C:0.08, G:0.20, T:0.46
Consensus pattern (133 bp):
TTGCATCTTGTTGATGGTGATATCCAAGTTTTAAAGTTTAAATTTGCATTTGCATTCTCTTAGTG
GTGATATCTGAGTATTAAAACTTGAATTACATTTTTTCGATGGTGATATTCGAGTATTAAGATTT
GAA
Found at i:9056128 original size:42 final size:42
Alignment explanation
Indices: 9055947--9056135 Score: 157
Period size: 42 Copynumber: 4.4 Consensus size: 42
9055937 ATTCTCTTAG
* * *
9055947 TGGTGATA-TCTGAGTATTAAAGCTTGAATTACATTTTTTCGA
1 TGGTGATATTC-GAGTATTAAAACTTGAATTGCATTTTTTTGA
* * * * * *
9055989 TGGTGATATTTGAGTATTAAGATTTGAATTGCATCTTGTTGG
1 TGGTGATATTCGAGTATTAAAACTTGAATTGCATTTTTTTGA
* * ** *
9056031 TGGTGATATCCAAGT-TTAAATTTTGAATTTGCATTTGTATTTTCTTA
1 TGGTGATATTCGAGTATTAAAACTTGAA-TTGCA--T-T-TTTT-TGA
*
9056078 GTGGTGATATTCGAGTATTAAAACTTGAATTGCATTTTTTTTA
1 -TGGTGATATTCGAGTATTAAAACTTGAATTGCATTTTTTTGA
9056121 TGGTGATATTCGAGT
1 TGGTGATATTCGAGT
9056136 TTCCTTCGGT
Statistics
Matches: 116, Mismatches: 22, Indels: 18
0.74 0.14 0.12
Matches are distributed among these distances:
41 10 0.09
42 63 0.54
43 4 0.03
44 5 0.04
45 1 0.01
46 4 0.03
47 1 0.01
48 18 0.16
49 10 0.09
ACGTcount: A:0.26, C:0.07, G:0.21, T:0.46
Consensus pattern (42 bp):
TGGTGATATTCGAGTATTAAAACTTGAATTGCATTTTTTTGA
Found at i:9056233 original size:48 final size:48
Alignment explanation
Indices: 9056161--9056499 Score: 153
Period size: 48 Copynumber: 6.8 Consensus size: 48
9056151 TATCCGAAGT
* *
9056161 CATTTGCA-TCTTTTCGGTGGTGATATCCGAGTTTAAAGTTTGAATTTG
1 CATTTGCATTC-TCTCGATGGTGATATCCGAGTTTAAAGTTTGAATTTG
* * * *** * *
9056209 CATTTGTATTCTCTCGATGGTGATATTCAAGTTTTCTTCGGTGATGATATCTGAAG
1 CATTTGCATTCTCTCGATGGTGATATCCGAG--TT-TAAAGT-TTGA-AT-T--TG
* *
9056265 TCATTTGCA-TCTTCTCGGTGGTGATATTCGAGTTTAAAGTTTGAATTTG
1 -CATTTGCATTC-TCTCGATGGTGATATCCGAGTTTAAAGTTTGAATTTG
* *
9056314 TATTTGCATTCTCTCGATGGTGATATCCGAGTATTAAAGCTTGAA-TT-
1 CATTTGCATTCTCTCGATGGTGATATCCGAGT-TTAAAGTTTGAATTTG
* ** ** ** *
9056361 -A----CATTTTCTCGATGGTGATATTTGAGTTCCCTTTAGTGGCGATATCTG
1 CATTTGCATTCTCTCGATGGTGATATCCGAGTT---TAAAGT-TTGA-ATTTG
* *
9056409 AAAATATTTACA-TCTTCTC-AGTGGTGATATCCGAGTTTAAAGTTTGAATTTG
1 ----CATTTGCATTC-TCTCGA-TGGTGATATCCGAGTTTAAAGTTTGAATTTG
9056461 CATTTGCATT-TCCTCGATGGTGATATCCGAGTATTAAAG
1 CATTTGCATTCT-CTCGATGGTGATATCCGAGT-TTAAAG
9056500 CTTAAATTAC
Statistics
Matches: 215, Mismatches: 41, Indels: 69
0.66 0.13 0.21
Matches are distributed among these distances:
41 1 0.00
42 23 0.11
44 3 0.01
45 2 0.01
46 2 0.01
47 2 0.01
48 75 0.35
49 24 0.11
50 2 0.01
51 4 0.02
52 9 0.04
53 8 0.04
54 8 0.04
55 2 0.01
56 5 0.02
57 45 0.21
ACGTcount: A:0.23, C:0.14, G:0.21, T:0.42
Consensus pattern (48 bp):
CATTTGCATTCTCTCGATGGTGATATCCGAGTTTAAAGTTTGAATTTG
Found at i:9056248 original size:105 final size:105
Alignment explanation
Indices: 9056120--9056339 Score: 359
Period size: 105 Copynumber: 2.1 Consensus size: 105
9056110 CATTTTTTTT
* *
9056120 ATGGTGATATTCGAGTTTCCTTCGGTGACAATATCCGAAGTCATTTGCATCTTTTCGGTGGTGAT
1 ATGGTGATATTCAAGTTTCCTTCGGTGACAATATCCGAAGTCATTTGCATCTTCTCGGTGGTGAT
*
9056185 ATCCGAGTTTAAAGTTTGAATTTGCATTTGTATTCTCTCG
66 ATCCGAGTTTAAAGTTTGAATTTGCATTTGCATTCTCTCG
* ** *
9056225 ATGGTGATATTCAAGTTTTCTTCGGTGATGATATCTGAAGTCATTTGCATCTTCTCGGTGGTGAT
1 ATGGTGATATTCAAGTTTCCTTCGGTGACAATATCCGAAGTCATTTGCATCTTCTCGGTGGTGAT
* *
9056290 ATTCGAGTTTAAAGTTTGAATTTGTATTTGCATTCTCTCG
66 ATCCGAGTTTAAAGTTTGAATTTGCATTTGCATTCTCTCG
9056330 ATGGTGATAT
1 ATGGTGATAT
9056340 CCGAGTATTA
Statistics
Matches: 106, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
105 106 1.00
ACGTcount: A:0.21, C:0.14, G:0.22, T:0.42
Consensus pattern (105 bp):
ATGGTGATATTCAAGTTTCCTTCGGTGACAATATCCGAAGTCATTTGCATCTTCTCGGTGGTGAT
ATCCGAGTTTAAAGTTTGAATTTGCATTTGCATTCTCTCG
Found at i:9056313 original size:147 final size:145
Alignment explanation
Indices: 9056220--9056590 Score: 537
Period size: 147 Copynumber: 2.5 Consensus size: 145
9056210 ATTTGTATTC
* * ** *
9056220 TCTCGATGGTGATATTCAAGTTTTCTTCGGTGATGATATCTGAAGTCATTTGCATCTTCTCGGTG
1 TCTCGATGGTGATATTCGAGTTTCCTTCGGTGGCGATATCTGAAGTCATTTGCATCTTCTCAGTG
* *
9056285 GTGATATTCGAGTTTAAAGTTTGAATTTGTATTTGCATTCTCTCGATGGTGATATCCGAGTATTA
66 GTGATATCCGAGTTTAAAGTTTGAATTTGCA-TTGCATT-TCTCGATGGTGATATCCGAGTATTA
9056350 AAGCTTGAATTACATTT
129 AAGCTTGAATTACATTT
* * ** * *
9056367 TCTCGATGGTGATATTTGAGTTCCCTTTAGTGGCGATATCTGAAAAT-ATTTACATCTTCTCAGT
1 TCTCGATGGTGATATTCGAGTTTCCTTCGGTGGCGATATCTG-AAGTCATTTGCATCTTCTCAGT
9056431 GGTGATATCCGAGTTTAAAGTTTGAATTTGCATTTGCATTTCCTCGATGGTGATATCCGAGTATT
65 GGTGATATCCGAGTTTAAAGTTTGAATTTGCA-TTGCATTT-CTCGATGGTGATATCCGAGTATT
*
9056496 AAAGCTTAAATTACATTT
128 AAAGCTTGAATTACATTT
* * *
9056514 TCTCGATGGTGATATTCGAGTTTCCTTCGATGGCAATATCCGAAGTCATTTGCATCTTCTCAGTG
1 TCTCGATGGTGATATTCGAGTTTCCTTCGGTGGCGATATCTGAAGTCATTTGCATCTTCTCAGTG
9056579 GTGATATCCGAG
66 GTGATATCCGAG
9056591 ATTATTTATC
Statistics
Matches: 198, Mismatches: 23, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
146 4 0.02
147 191 0.96
148 3 0.02
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.40
Consensus pattern (145 bp):
TCTCGATGGTGATATTCGAGTTTCCTTCGGTGGCGATATCTGAAGTCATTTGCATCTTCTCAGTG
GTGATATCCGAGTTTAAAGTTTGAATTTGCATTGCATTTCTCGATGGTGATATCCGAGTATTAAA
GCTTGAATTACATTT
Found at i:9056462 original size:252 final size:252
Alignment explanation
Indices: 9056017--9056486 Score: 649
Period size: 252 Copynumber: 1.9 Consensus size: 252
9056007 AAGATTTGAA
* * * * * *
9056017 TTGCATCTTGTTGGTGGTGATATCCAAGTTTAAATTTTGAATTTGCATTTGTATTTTCTTAGTGG
1 TTGCATCTTCTCGGTGGTGATATCCAAGTTTAAAGTTTGAATTTGCATTTGCATTCTCTGAGTGG
* * * ** * *
9056082 TGATATTCGAGTATTAAAACTTGAATTGCATTTTTTTTATGGTGATATTCGAGTTTCCTTCGGTG
66 TGATATCCGAGTATTAAAACTTGAATTACATTTTCTCGATGGTGATATTCGAGTTCCCTTCAGTG
* * * *
9056147 ACAATATCCGAAGTCATTTGCATCTTTTCGGTGGTGATATCCGAGTTTAAAGTTTGAATTTGCAT
131 ACAATATCCGAAATCATTTACATCTTCTCAGTGGTGATATCCGAGTTTAAAGTTTGAATTTGCAT
*
9056212 TTGTA-TTCTCTCGATGGTGATATTCAAGTTTTCTTCGGTGATGATATCTGAAGTCAT
196 TTGCATTTC-CTCGATGGTGATATTCAAGTTTTCTTCGGTGATGATATCTGAAGTCAT
* * *
9056269 TTGCATCTTCTCGGTGGTGATATTCGAGTTTAAAGTTTGAATTTGTATTTGCATTCTCTCGA-TG
1 TTGCATCTTCTCGGTGGTGATATCCAAGTTTAAAGTTTGAATTTGCATTTGCATTCTCT-GAGTG
* * *
9056333 GTGATATCCGAGTATTAAAGCTTGAATTACATTTTCTCGATGGTGATATTTGAGTTCCCTTTAGT
65 GTGATATCCGAGTATTAAAACTTGAATTACATTTTCTCGATGGTGATATTCGAGTTCCCTTCAGT
* * *
9056398 GGCGATATCTGAAAAT-ATTTACATCTTCTCAGTGGTGATATCCGAGTTTAAAGTTTGAATTTGC
130 GACAATATCCG-AAATCATTTACATCTTCTCAGTGGTGATATCCGAGTTTAAAGTTTGAATTTGC
9056462 ATTTGCATTTCCTCGATGGTGATAT
194 ATTTGCATTTCCTCGATGGTGATAT
9056487 CCGAGTATTA
Statistics
Matches: 188, Mismatches: 27, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
252 181 0.96
253 7 0.04
ACGTcount: A:0.23, C:0.13, G:0.21, T:0.43
Consensus pattern (252 bp):
TTGCATCTTCTCGGTGGTGATATCCAAGTTTAAAGTTTGAATTTGCATTTGCATTCTCTGAGTGG
TGATATCCGAGTATTAAAACTTGAATTACATTTTCTCGATGGTGATATTCGAGTTCCCTTCAGTG
ACAATATCCGAAATCATTTACATCTTCTCAGTGGTGATATCCGAGTTTAAAGTTTGAATTTGCAT
TTGCATTTCCTCGATGGTGATATTCAAGTTTTCTTCGGTGATGATATCTGAAGTCAT
Found at i:9056723 original size:50 final size:50
Alignment explanation
Indices: 9056668--9056872 Score: 258
Period size: 50 Copynumber: 4.1 Consensus size: 50
9056658 CTCTACTGCT
9056668 TTTTTCAAGATAAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCCA
1 TTTTTCAAGATAAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCCA
* * *
9056718 TTTTTC-ATATGAGGATTTTTAAGTTGTTGAGCCTCTGCTGAGA-AGAG--A
1 TTTTTCAAGAT-AAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGA-AGCCA
9056766 TTTTTTCAAGATAAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCCA
1 -TTTTTCAAGATAAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCCA
* * * * *
9056817 TTTTTCATATGAGAA-TTTTTAAAATTGTTGAGCCTCTGCTGAGAGGAGCCT
1 TTTTTCA-A-GATAAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCCA
9056868 TTTTT
1 TTTTT
9056873 AGATTTTAAA
Statistics
Matches: 135, Mismatches: 11, Indels: 17
0.83 0.07 0.10
Matches are distributed among these distances:
48 1 0.01
49 42 0.31
50 49 0.36
51 39 0.29
52 4 0.03
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.39
Consensus pattern (50 bp):
TTTTTCAAGATAAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCCA
Found at i:9056790 original size:99 final size:100
Alignment explanation
Indices: 9056667--9056860 Score: 363
Period size: 99 Copynumber: 1.9 Consensus size: 100
9056657 CCTCTACTGC
*
9056667 TTTTTTCAAGATAAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCCATTTTTCATATGAGG
1 TTTTTTCAAGATAAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCCATTTTTCATATGAGA
*
9056732 ATTTTT-AAGTTGTTGAGCCTCTGCTGAGAAGAGA
66 ATTTTTAAAATTGTTGAGCCTCTGCTGAGAAGAGA
9056766 TTTTTTCAAGATAAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCCATTTTTCATATGAGA
1 TTTTTTCAAGATAAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCCATTTTTCATATGAGA
9056831 ATTTTTAAAATTGTTGAGCCTCTGCTGAGA
66 ATTTTTAAAATTGTTGAGCCTCTGCTGAGA
9056861 GGAGCCTTTT
Statistics
Matches: 92, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
99 70 0.76
100 22 0.24
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (100 bp):
TTTTTTCAAGATAAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCCATTTTTCATATGAGA
ATTTTTAAAATTGTTGAGCCTCTGCTGAGAAGAGA
Found at i:9056837 original size:51 final size:51
Alignment explanation
Indices: 9056683--9056904 Score: 258
Period size: 51 Copynumber: 4.4 Consensus size: 51
9056673 CAAGATAAGA
*
9056683 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCCATTTTTCATATGAGGAT
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCCATTTTTCATATGAGAAT
* *
9056734 TTTT-AAGTTGTTGAGCCTCTGCTGAGA-AGAG--ATTTTTTCA-A-GATAAGA
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGA-AGCCA-TTTTTCATATGAGAA-T
9056782 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCCATTTTTCATATGAGAAT
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCCATTTTTCATATGAGAAT
* * * * * * *
9056833 TTTTAAAATTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTTAGATTTTAAAAT
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCCATTTTT-CATATGAGAAT
**
9056885 TTCAAAAGTTGTTGAGCCTC
1 TTTTAAAGTTGTTGAGCCTC
9056905 GAGTAAGATG
Statistics
Matches: 146, Mismatches: 15, Indels: 19
0.81 0.08 0.11
Matches are distributed among these distances:
47 3 0.02
48 6 0.04
49 33 0.23
50 33 0.23
51 43 0.29
52 28 0.19
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.38
Consensus pattern (51 bp):
TTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCCATTTTTCATATGAGAAT
Found at i:9057816 original size:16 final size:14
Alignment explanation
Indices: 9057797--9057824 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
9057787 AGTGTAGAGA
9057797 GAGAGAAGAAAAAT
1 GAGAGAAGAAAAAT
9057811 GAGAGAAGAAAAAT
1 GAGAGAAGAAAAAT
9057825 TTTTTTAGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.29, T:0.07
Consensus pattern (14 bp):
GAGAGAAGAAAAAT
Found at i:9059643 original size:26 final size:26
Alignment explanation
Indices: 9059592--9059662 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
9059582 TTAATATAAC
*
9059592 TATTAAAATAT-TAAAAATTATTTAT
1 TATTAAAATATATTAAAATTATTTAT
*
9059617 TATTAAAATATATTAGAATTATTTAT
1 TATTAAAATATATTAAAATTATTTAT
*
9059643 TATTAAAAT-TATTAATATTA
1 TATTAAAATATATTAAAATTA
9059663 AAAAATAATT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 20 0.49
26 21 0.51
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (26 bp):
TATTAAAATATATTAAAATTATTTAT
Found at i:9059674 original size:20 final size:19
Alignment explanation
Indices: 9059652--9059724 Score: 55
Period size: 17 Copynumber: 3.9 Consensus size: 19
9059642 TTATTAAAAT
9059652 TATTAATATTAAAAAAT-A
1 TATTAATATTAAAAAATAA
* *
9059670 -ATT-ATATTTTAATAATAA
1 TATTAATA-TTAAAAAATAA
* *
9059688 TATTTAATATTAAAATATTA
1 TA-TTAATATTAAAAAATAA
*
9059708 TGTTAATA-TAAAAAATA
1 TATTAATATTAAAAAATA
9059725 CTTAAAATAA
Statistics
Matches: 41, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
16 3 0.07
17 10 0.24
18 8 0.20
19 7 0.17
20 10 0.24
21 3 0.07
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (19 bp):
TATTAATATTAAAAAATAA
Found at i:9059713 original size:19 final size:18
Alignment explanation
Indices: 9059636--9059729 Score: 74
Period size: 18 Copynumber: 5.4 Consensus size: 18
9059626 ATATTAGAAT
*
9059636 TATTTATTATTAAAAT--
1 TATTTAATATTAAAATAA
9059652 TA-TTAATATTAAAA-AA
1 TATTTAATATTAAAATAA
* *
9059668 TAATTATATTTTAATAATAA
1 TATTTA-ATATTAA-AATAA
*
9059688 TATTTAATATTAAAATAT
1 TATTTAATATTAAAATAA
9059706 TATGTTAATA-TAAAA-AA
1 TAT-TTAATATTAAAATAA
*
9059723 TACTTAA
1 TATTTAA
9059730 AATAAAACTA
Statistics
Matches: 64, Mismatches: 7, Indels: 14
0.75 0.08 0.16
Matches are distributed among these distances:
15 11 0.17
16 8 0.12
17 6 0.09
18 18 0.28
19 14 0.22
20 7 0.11
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (18 bp):
TATTTAATATTAAAATAA
Found at i:9059770 original size:15 final size:15
Alignment explanation
Indices: 9059752--9059880 Score: 152
Period size: 15 Copynumber: 8.6 Consensus size: 15
9059742 TATTATTCAT
9059752 TATATTATTTATTAA
1 TATATTATTTATTAA
9059767 TATATTATTTATTAA
1 TATATTATTTATTAA
*
9059782 TATATGATTTATTAA
1 TATATTATTTATTAA
* *
9059797 TATAATA-TTATTTA
1 TATATTATTTATTAA
* * *
9059811 TTTATTATATATTAG
1 TATATTATTTATTAA
* *
9059826 TATAATATTTATTTA
1 TATATTATTTATTAA
*
9059841 TAATAATATTTATTAA
1 T-ATATTATTTATTAA
9059857 TATATTATTTATTAA
1 TATATTATTTATTAA
*
9059872 TATAATATT
1 TATATTATT
9059881 ATTTATAAAT
Statistics
Matches: 95, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
14 11 0.12
15 70 0.74
16 14 0.15
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (15 bp):
TATATTATTTATTAA
Found at i:9059901 original size:18 final size:18
Alignment explanation
Indices: 9059858--9059895 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
9059848 ATTTATTAAT
* *
9059858 ATATTATTTATTAATATA
1 ATATTATTTATAAATAAA
9059876 ATATTATTTATAAATAAA
1 ATATTATTTATAAATAAA
9059894 AT
1 AT
9059896 TATATTCACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
ATATTATTTATAAATAAA
Found at i:9059921 original size:90 final size:90
Alignment explanation
Indices: 9059757--9059938 Score: 203
Period size: 90 Copynumber: 2.0 Consensus size: 90
9059747 TTCATTATAT
** * **
9059757 TATTTATTAATATATTATTTATTAATATATGATTTATTAATATAATATTATTTATTTATTATATA
1 TATTTATTAATATATTATTTATTAATATATGATTTATTAATATAATAAAATTTATTCACAATATA
* * *
9059822 TTAGTATAATATTTATTTAT-AATAA
66 ATAGAATAAT-TTTACTTATAAATAA
*
9059847 TATTTATTAATATATTATTTATTAATATA--ATATTATTTATA-AATAAAATTATATTCACAAGT
1 TATTTATTAATATATTATTTATTAATATATGAT-TTATTAATATAATAAAATT-TATTCACAA-T
9059909 ATAGATA-AATAATTTTACTTATAAATAA
63 ATA-ATAGAATAATTTTACTTATAAATAA
9059937 TA
1 TA
9059939 CTTTTTCGAA
Statistics
Matches: 78, Mismatches: 9, Indels: 10
0.80 0.09 0.10
Matches are distributed among these distances:
88 9 0.12
89 22 0.28
90 45 0.58
91 2 0.03
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (90 bp):
TATTTATTAATATATTATTTATTAATATATGATTTATTAATATAATAAAATTTATTCACAATATA
ATAGAATAATTTTACTTATAAATAA
Found at i:9060045 original size:22 final size:22
Alignment explanation
Indices: 9060003--9060049 Score: 53
Period size: 22 Copynumber: 2.1 Consensus size: 22
9059993 ATTAATCTTA
9060003 TTTTCGATTAATAAATAAATTAT
1 TTTTCGATTAATAAATAAATT-T
*
9060026 TTTTCG-TTAA-ACAATCAATTT
1 TTTTCGATTAATA-AATAAATTT
9060047 TTT
1 TTT
9060050 ATCAAACAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
21 5 0.23
22 11 0.50
23 6 0.27
ACGTcount: A:0.36, C:0.09, G:0.04, T:0.51
Consensus pattern (22 bp):
TTTTCGATTAATAAATAAATTT
Found at i:9061118 original size:18 final size:18
Alignment explanation
Indices: 9061088--9061142 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
9061078 GCAAATTTTT
*
9061088 AAATTTTACGAATCTTT-
1 AAATTTTATGAATCTTTG
* *
9061105 AAGTTTTTATGAATTTTTG
1 AA-ATTTTATGAATCTTTG
*
9061124 AAATTTTGTGAATCTTTG
1 AAATTTTATGAATCTTTG
9061142 A
1 A
9061143 GTCTTGCAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
17 2 0.07
18 26 0.87
19 2 0.07
ACGTcount: A:0.31, C:0.05, G:0.13, T:0.51
Consensus pattern (18 bp):
AAATTTTATGAATCTTTG
Found at i:9061170 original size:34 final size:34
Alignment explanation
Indices: 9061119--9061188 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 34
9061109 TTTTATGAAT
* * * *
9061119 TTTTGAAATTTTGTGAATCTTTGAGTCTTGCAAA
1 TTTTCAAATCTTGTGAATCTTCGAATCTTGCAAA
*
9061153 TTTTCAAATCTTGTGAATCTTCGAATCTTGCGAA
1 TTTTCAAATCTTGTGAATCTTCGAATCTTGCAAA
9061187 TT
1 TT
9061189 AAAAAACCTT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.26, C:0.13, G:0.16, T:0.46
Consensus pattern (34 bp):
TTTTCAAATCTTGTGAATCTTCGAATCTTGCAAA
Found at i:9061179 original size:17 final size:17
Alignment explanation
Indices: 9061133--9061187 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
9061123 GAAATTTTGT
* *
9061133 GAATCTTTGAGTCTTGC
1 GAATCTTCGAATCTTGC
* * * *
9061150 AAATTTTCAAATCTTGT
1 GAATCTTCGAATCTTGC
9061167 GAATCTTCGAATCTTGC
1 GAATCTTCGAATCTTGC
9061184 GAAT
1 GAAT
9061188 TAAAAAACCT
Statistics
Matches: 28, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (17 bp):
GAATCTTCGAATCTTGC
Found at i:9069254 original size:32 final size:30
Alignment explanation
Indices: 9069197--9069255 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
9069187 AGATTATTTT
* * *
9069197 TTATTTTTTTATTTTCATTTGAAAATATTA
1 TTATTTTTTTACTTTCAATTAAAAATATTA
9069227 TTATTTTTTTACTTTCAGAATTAAAAATA
1 TTATTTTTTTACTTTC--AATTAAAAATA
9069256 GCATAAATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 15 0.62
32 9 0.38
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (30 bp):
TTATTTTTTTACTTTCAATTAAAAATATTA
Found at i:9069317 original size:5 final size:5
Alignment explanation
Indices: 9069309--9069338 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
9069299 AAATGGGTTA
9069309 AAAAT AAAAT AAAAT AAAAT AAAAT GAAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAA
9069339 AGGGAAAACC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 20 0.83
6 4 0.17
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:9070217 original size:3 final size:3
Alignment explanation
Indices: 9070209--9070340 Score: 92
Period size: 3 Copynumber: 42.3 Consensus size: 3
9070199 TAAATAAATA
* * *
9070209 AAT AAT AAT AAT AAT AAT AAT AAT AAC CAT AGT ATAT AAT ATAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT A-AT AAT
* *
9070256 AAT AAT AAT AACT -AT AGT ATAT AA- AAT AAT CTAT AAT ATAT AAT AAT
1 AAT AAT AAT AA-T AAT AAT A-AT AAT AAT AAT -AAT AAT A-AT AAT AAT
* *
9070303 AAT AAT AACT -AT AAT GTAT AGT -AT AAT ATAT AAT AAT A
1 AAT AAT AA-T AAT AAT -AAT AAT AAT AAT A-AT AAT AAT A
9070341 TTATAGCATA
Statistics
Matches: 102, Mismatches: 14, Indels: 26
0.72 0.10 0.18
Matches are distributed among these distances:
2 5 0.05
3 78 0.76
4 19 0.19
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.36
Consensus pattern (3 bp):
AAT
Found at i:9070260 original size:32 final size:31
Alignment explanation
Indices: 9070213--9070285 Score: 121
Period size: 32 Copynumber: 2.4 Consensus size: 31
9070203 TAAATAAATA
9070213 ATAATAATAATAATAATAATAACCATAGTAT
1 ATAATAATAATAATAATAATAACCATAGTAT
*
9070244 ATAATATATAATAATAATAATAACTATAGTAT
1 ATAATA-ATAATAATAATAATAACCATAGTAT
9070276 ATAA-AATAAT
1 ATAATAATAAT
9070286 CTATAATATA
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
30 5 0.12
31 7 0.17
32 28 0.70
ACGTcount: A:0.59, C:0.04, G:0.03, T:0.34
Consensus pattern (31 bp):
ATAATAATAATAATAATAATAACCATAGTAT
Found at i:9070329 original size:44 final size:44
Alignment explanation
Indices: 9070202--9070337 Score: 163
Period size: 44 Copynumber: 3.1 Consensus size: 44
9070192 GTAAATGTAA
* *
9070202 ATAA-ATA-AATAATAATAATAA-TAATAATA-ATAACCATAGTAT
1 ATAATATATAATAATAATAATAACT-ATAATATATAA-AATAATAT
* *
9070244 ATAATATATAATAATAATAATAACTATAGTATATAAAATAATCT
1 ATAATATATAATAATAATAATAACTATAATATATAAAATAATAT
* **
9070288 ATAATATATAATAATAATAATAACTATAATGTATAGTATAATAT
1 ATAATATATAATAATAATAATAACTATAATATATAAAATAATAT
9070332 ATAATA
1 ATAATA
9070338 ATATTATAGC
Statistics
Matches: 81, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
42 4 0.05
43 3 0.04
44 69 0.85
45 5 0.06
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.35
Consensus pattern (44 bp):
ATAATATATAATAATAATAATAACTATAATATATAAAATAATAT
Found at i:9070627 original size:54 final size:54
Alignment explanation
Indices: 9070542--9070648 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 54
9070532 AAGTTAAATA
* * * * *
9070542 ATTTGACCTAAGCCGAGATTGAGTGATTAGGACAATGCCGTGAGTCT-AAAAGTG
1 ATTTGACCTAAACCGAGATCGAATAACTAGGACAATGCCGTGAGT-TGAAAAGTG
* * *
9070596 ATTTGACTTAAACCGAGATCGAATAACTAGGATAATGTCGTGAGTTGAAAAGT
1 ATTTGACCTAAACCGAGATCGAATAACTAGGACAATGCCGTGAGTTGAAAAGT
9070649 AACCAAGACT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
53 1 0.02
54 43 0.98
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.27
Consensus pattern (54 bp):
ATTTGACCTAAACCGAGATCGAATAACTAGGACAATGCCGTGAGTTGAAAAGTG
Found at i:9071293 original size:114 final size:114
Alignment explanation
Indices: 9070787--9071293 Score: 405
Period size: 114 Copynumber: 4.5 Consensus size: 114
9070777 CAAGGTCATA
* * * * *** * *
9070787 AAGATAATCTGACCTGAGTCAAAATCAAATGATTGGGATGATACTGTGAGTCTGAAAGCGACCAA
1 AAGATGATCTGACTTGAGTCAAGATCAAATGACTGGGATGATACCACGAGTCTGAAGGTGACCAA
* * * * * * * *
9070852 GATAAAGTCGAGGTCATAAGTAAATAACCAAATTGATGCCGTGAGTTTG
66 GACAGAGTCGAGGTCATAAGTAAATGACTAGACTGATGCCGTAAGTCTG
* * ** * ** *
9070901 AAGATGATCTGACCTAAGTTGAGATCAGATGACTGAAATGATACCACGAGTTTGAAGGTGACCAA
1 AAGATGATCTGACTTGAGTCAAGATCAAATGACTGGGATGATACCACGAGTCTGAAGGTGACCAA
* * * * * *
9070966 GATC-TAGTCAATGTCATAAGTAAATGACTAGACTGATTCCATAAGTCTA
66 GA-CAGAGTCGAGGTCATAAGTAAATGACTAGACTGATGCCGTAAGTCTG
* * ** *** * *
9071015 AAGATGATTTGACTTGATTCAAGATCAAATGACTGGGACAATGTTACGAGTTTGAAGGCT-ACTA
1 AAGATGATCTGACTTGAGTCAAGATCAAATGACTGGGATGATACCACGAGTCTGAAGG-TGACCA
** * *
9071079 AGATTGAGTCGAGGTCAT-AGCTAAATGACTAGACTAAT-TCGTAAGTCTG
65 AGACAGAGTCGAGGTCATAAG-TAAATGACTAGACTGATGCCGTAAGTCTG
* * * * * * *
9071128 AAGATGATCTGATTTGAGTCGAGATCAAATAACTAGAATGATATCACGAGTCTGAAGGTGAGCAA
1 AAGATGATCTGACTTGAGTCAAGATCAAATGACTGGGATGATACCACGAGTCTGAAGGTGACCAA
* *
9071193 GACAGAGTC-ATGGTCATAAGTAAATGA-TCAGACTGATGCCGCAAGTTTG
66 GACAGAGTCGA-GGTCATAAGTAAATGACT-AGACTGATGCCGTAAGTCTG
* * * * *
9071242 AAGATGATCTGACTTGAGTCAATATTATATGACTGGGATGATGCCATGAGTC
1 AAGATGATCTGACTTGAGTCAAGATCAAATGACTGGGATGATACCACGAGTC
9071294 AGCAATGAAG
Statistics
Matches: 302, Mismatches: 82, Indels: 18
0.75 0.20 0.04
Matches are distributed among these distances:
112 3 0.01
113 86 0.28
114 212 0.70
115 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.27
Consensus pattern (114 bp):
AAGATGATCTGACTTGAGTCAAGATCAAATGACTGGGATGATACCACGAGTCTGAAGGTGACCAA
GACAGAGTCGAGGTCATAAGTAAATGACTAGACTGATGCCGTAAGTCTG
Found at i:9071751 original size:35 final size:33
Alignment explanation
Indices: 9071640--9071751 Score: 100
Period size: 34 Copynumber: 3.2 Consensus size: 33
9071630 TCACAAAGGC
**
9071640 TTTAGATTCGTAAAGATGCAAGGTTCGTAAGAACT
1 TTTAGATTCG-AAAGATGCAAGGTTCACAAGAA-T
* * * *
9071675 TTTAAATTCGTAAGATTTCAAGTTTCACAA-ACAT
1 TTTAGATTCGAAAGA-TGCAAGGTTCACAAGA-AT
*
9071709 TTTAGATTCGAAAAGATGCAAGGTTCACAAGGAT
1 TTTAGATTCG-AAAGATGCAAGGTTCACAAGAAT
9071743 TTTCAGATT
1 TTT-AGATT
9071752 TCCAAGATTT
Statistics
Matches: 61, Mismatches: 11, Indels: 10
0.74 0.13 0.12
Matches are distributed among these distances:
34 32 0.52
35 29 0.48
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (33 bp):
TTTAGATTCGAAAGATGCAAGGTTCACAAGAAT
Found at i:9071781 original size:69 final size:69
Alignment explanation
Indices: 9071620--9071785 Score: 192
Period size: 69 Copynumber: 2.4 Consensus size: 69
9071610 GATTCATAAA
* * **
9071620 ATTTTAAGTTTCACAAAGGCTTTAGATTCGTAAAGATGCAAGGTTCGTAAGAACTTTTAAATTCG
1 ATTTTAAGTTTCACAAAGGTTTTAGATTCGAAAAGATGCAAGGTTCACAAGAACTTTTAAATTCG
*
9071685 TAAG
66 CAAG
* ** * *
9071689 ATTTCAAGTTTCACAAACATTTTAGATTCGAAAAGATGCAAGGTTCACAAGGA-TTTTCAGATTT
1 ATTTTAAGTTTCACAAAGGTTTTAGATTCGAAAAGATGCAAGGTTCACAAGAACTTTT-A-AATT
9071753 C-CAAG
64 CGCAAG
**
9071758 ATTTTAAGTTTCGTAAAGGTTTTAGATT
1 ATTTTAAGTTTCACAAAGGTTTTAGATT
9071786 TGTAAATATT
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
68 4 0.05
69 72 0.90
70 4 0.05
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.36
Consensus pattern (69 bp):
ATTTTAAGTTTCACAAAGGTTTTAGATTCGAAAAGATGCAAGGTTCACAAGAACTTTTAAATTCG
CAAG
Found at i:9071817 original size:18 final size:18
Alignment explanation
Indices: 9071794--9071828 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
9071784 TTTGTAAATA
9071794 TTTCAGATTCGCAAGAAC
1 TTTCAGATTCGCAAGAAC
9071812 TTTCAGATTCGCAAGAA
1 TTTCAGATTCGCAAGAA
9071829 AGAAAGATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (18 bp):
TTTCAGATTCGCAAGAAC
Found at i:9072854 original size:20 final size:20
Alignment explanation
Indices: 9072830--9072897 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 20
9072820 CTTTTCTTCT
*
9072830 TTTTTTTTTTTACTTTTTTTG
1 TTTTTTTCTTT-CTTTTTTTG
* *
9072851 TTTTTTTGTTTTTTTTTTTG
1 TTTTTTTCTTTCTTTTTTTG
*
9072871 TCTTTTTGTCTTTCTTTTTTTC
1 T-TTTTT-TCTTTCTTTTTTTG
9072893 TTTTT
1 TTTTT
9072898 GTTGTGTTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
20 9 0.22
21 19 0.47
22 12 0.30
ACGTcount: A:0.01, C:0.07, G:0.06, T:0.85
Consensus pattern (20 bp):
TTTTTTTCTTTCTTTTTTTG
Found at i:9072866 original size:12 final size:12
Alignment explanation
Indices: 9072829--9072913 Score: 59
Period size: 12 Copynumber: 6.9 Consensus size: 12
9072819 TCTTTTCTTC
9072829 TTTTTTT-TTTT
1 TTTTTTTGTTTT
** *
9072840 TACTTTT-TTTG
1 TTTTTTTGTTTT
9072851 TTTTTTTGTTTT
1 TTTTTTTGTTTT
9072863 TTTTTTTGTCTTT
1 TTTTTTTGT-TTT
9072876 TTGTCTTTCT-TTTT
1 TT-T-TTT-TGTTTT
*
9072890 TTCTTTTTGTTGT
1 TT-TTTTTGTTTT
*
9072903 GTTTTTTGTTT
1 TTTTTTTGTTT
9072914 GTACACCTTT
Statistics
Matches: 58, Mismatches: 10, Indels: 11
0.73 0.13 0.14
Matches are distributed among these distances:
11 13 0.22
12 21 0.36
13 12 0.21
14 7 0.12
15 4 0.07
16 1 0.02
ACGTcount: A:0.01, C:0.06, G:0.09, T:0.84
Consensus pattern (12 bp):
TTTTTTTGTTTT
Found at i:9072898 original size:20 final size:19
Alignment explanation
Indices: 9072826--9072899 Score: 73
Period size: 20 Copynumber: 3.9 Consensus size: 19
9072816 TCATCTTTTC
*
9072826 TTCTTTTTTTTTTTT-ACT
1 TTCTTTTTTTTTTTTGTCT
*
9072844 TT-TTTTGTTTTTTTGT-T
1 TTCTTTTTTTTTTTTGTCT
*
9072861 TTTTTTTTTGTCTTTTTGTCT
1 TTCTTTTTT-T-TTTTTGTCT
9072882 TTCTTTTTTTCTTTTTGT
1 TTCTTTTTTT-TTTTTGT
9072900 TGTGTTTTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
17 14 0.30
18 7 0.15
19 1 0.02
20 16 0.34
21 9 0.19
ACGTcount: A:0.01, C:0.08, G:0.07, T:0.84
Consensus pattern (19 bp):
TTCTTTTTTTTTTTTGTCT
Found at i:9072908 original size:20 final size:19
Alignment explanation
Indices: 9072843--9072911 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 19
9072833 TTTTTTTTAC
*
9072843 TTTTTTTGTTTTTTTGTTTT
1 TTTTTTTGTCTTTTTG-TTT
9072863 TTTTTTTGTCTTTTTGTCTT
1 TTTTTTTGTCTTTTTGT-TT
9072883 TCTTTTTT-TCTTTTTGTTGT
1 T-TTTTTTGTCTTTTTGTT-T
*
9072903 GTTTTTTGT
1 TTTTTTTGT
9072912 TTGTACACCT
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
19 8 0.19
20 29 0.67
21 6 0.14
ACGTcount: A:0.00, C:0.06, G:0.12, T:0.83
Consensus pattern (19 bp):
TTTTTTTGTCTTTTTGTTT
Found at i:9072911 original size:9 final size:8
Alignment explanation
Indices: 9072829--9072913 Score: 59
Period size: 8 Copynumber: 10.2 Consensus size: 8
9072819 TCTTTTCTTC
9072829 TTTTTT-T
1 TTTTTTGT
**
9072836 TTTTTACT
1 TTTTTTGT
9072844 TTTTTTGT
1 TTTTTTGT
9072852 TTTTTTGT
1 TTTTTTGT
9072860 TTTTTT-T
1 TTTTTTGT
9072867 TTTGTCTT-T
1 TTT-T-TTGT
*
9072876 TTGTCTTTCT
1 TT-T-TTTGT
*
9072886 TTTTTTCT
1 TTTTTTGT
9072894 TTTTGTTGT
1 TTTT-TTGT
9072903 GTTTTTTGT
1 -TTTTTTGT
9072912 TT
1 TT
9072914 GTACACCTTT
Statistics
Matches: 66, Mismatches: 5, Indels: 13
0.79 0.06 0.15
Matches are distributed among these distances:
7 9 0.14
8 33 0.50
9 15 0.23
10 9 0.14
ACGTcount: A:0.01, C:0.06, G:0.09, T:0.84
Consensus pattern (8 bp):
TTTTTTGT
Found at i:9073214 original size:5 final size:5
Alignment explanation
Indices: 9073195--9073227 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
9073185 GCCTCATGAA
*
9073195 TTTTC TTAT- TTTTC TTTTC TTTTC TTTTC TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
9073228 TAGTGGAGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
4 3 0.12
5 22 0.88
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTC
Found at i:9076987 original size:31 final size:33
Alignment explanation
Indices: 9076924--9076993 Score: 92
Period size: 31 Copynumber: 2.2 Consensus size: 33
9076914 ATTTTTGAAA
* *
9076924 ACTTT-ATTTGAAAAGATTTTTTTTATTTTTTT
1 ACTTTCATTTGAAAAGATTTATTATATTTTTTT
*
9076956 ATTTTCATTTGAAAAGA-TTATTAT-TTTTTTT
1 ACTTTCATTTGAAAAGATTTATTATATTTTTTT
9076987 ACTTTCA
1 ACTTTCA
9076994 GAATTAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
31 13 0.39
32 9 0.27
33 11 0.33
ACGTcount: A:0.27, C:0.06, G:0.06, T:0.61
Consensus pattern (33 bp):
ACTTTCATTTGAAAAGATTTATTATATTTTTTT
Found at i:9077082 original size:18 final size:19
Alignment explanation
Indices: 9077061--9077101 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
9077051 AAAATAGGTT
9077061 AAAAAT-AAAATAAAATCA
1 AAAAATAAAAATAAAATCA
*
9077079 AAAAATAAAAATAAAATGA
1 AAAAATAAAAATAAAATCA
9077098 AAAA
1 AAAA
9077102 GGAAAAAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.15
Consensus pattern (19 bp):
AAAAATAAAAATAAAATCA
Found at i:9077107 original size:19 final size:19
Alignment explanation
Indices: 9077067--9077113 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
9077057 GGTTAAAAAT
*
9077067 AAAATAAAATCAAAAAATA
1 AAAATAAAATCAAAAAAGA
* *
9077086 AAAATAAAATGAAAAAGGA
1 AAAATAAAATCAAAAAAGA
*
9077105 AAAAGAAAA
1 AAAATAAAA
9077114 AACTTGCAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.79, C:0.02, G:0.09, T:0.11
Consensus pattern (19 bp):
AAAATAAAATCAAAAAAGA
Found at i:9077996 original size:3 final size:3
Alignment explanation
Indices: 9077988--9078166 Score: 145
Period size: 3 Copynumber: 57.7 Consensus size: 3
9077978 AATGTAAATA
* * *
9077988 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT AAC CAT AAT ATAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT
* *
9078037 AAT ATAT AAT ATAT AAT AAT AAT AGT AA- AAT AAT AAT AACT -AT AGT
1 AAT A-AT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT
* *
9078083 ATAT AAT ATAT AAT ATAT GTAT AAT AAT AAT AAC AAT AAT AACT -AT
1 A-AT AAT A-AT AAT A-AT -AAT AAT AAT AAT AAT AAT AAT AA-T AAT
9078129 AGGAT -AT AAT -AT AAT -AT AAT ATAT AAT AAT AAT AAT AA
1 A--AT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AA
9078167 CTATAGTGTG
Statistics
Matches: 144, Mismatches: 14, Indels: 36
0.74 0.07 0.19
Matches are distributed among these distances:
2 10 0.07
3 109 0.76
4 23 0.16
5 2 0.01
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:9078155 original size:42 final size:41
Alignment explanation
Indices: 9078047--9078196 Score: 146
Period size: 42 Copynumber: 3.6 Consensus size: 41
9078037 AATATATAAT
* * **
9078047 ATATAATAATAATAGTAAAATAATAATAACTATAGT-A-TATAAT
1 ATATAAT-ATAATA-T--AATAATAATAACAATAATAACTATAGG
*
9078090 ATATAATATATGTATAATAATAATAACAATAATAACTATAGG
1 ATATAATATA-ATATAATAATAATAACAATAATAACTATAGG
*
9078132 ATATAATATAATATAATATATAATAATAATAATAACTATAGTG
1 ATATAATATAATATAATA-ATAATAACAATAATAACTATAG-G
*
9078175 -TGTAATATAATA-AATAATAATA
1 ATATAATATAATATAATAATAATA
9078197 CTATAGTATA
Statistics
Matches: 94, Mismatches: 8, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
40 22 0.23
41 12 0.13
42 50 0.53
43 10 0.11
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (41 bp):
ATATAATATAATATAATAATAATAACAATAATAACTATAGG
Found at i:9078212 original size:31 final size:30
Alignment explanation
Indices: 9078149--9078221 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 30
9078139 ATAATATAAT
* *
9078149 ATATAATAATAATAATAACTATAGTGTGTA
1 ATATAATAATAATAATAACTATAGTATCTA
9078179 ATATAATAAATAATAAT-ACTATAGTATACTA
1 ATATAAT-AATAATAATAACTATAGTAT-CTA
*
9078210 ATAAAATTAATA
1 ATATAA-TAATA
9078222 GTATCCCCAG
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
30 16 0.43
31 20 0.54
32 1 0.03
ACGTcount: A:0.55, C:0.04, G:0.05, T:0.36
Consensus pattern (30 bp):
ATATAATAATAATAATAACTATAGTATCTA
Found at i:9082795 original size:18 final size:17
Alignment explanation
Indices: 9082753--9082795 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
9082743 GTTAAGTGAG
9082753 TTTTAA-TTGTTGTTAA
1 TTTTAATTTGTTGTTAA
9082769 TTTTAATTTGTATGTT-A
1 TTTTAATTTGT-TGTTAA
9082786 TTTTAGATTT
1 TTTTA-ATTT
9082796 ATAATTTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
16 6 0.25
17 10 0.42
18 8 0.33
ACGTcount: A:0.23, C:0.00, G:0.12, T:0.65
Consensus pattern (17 bp):
TTTTAATTTGTTGTTAA
Found at i:9083077 original size:16 final size:17
Alignment explanation
Indices: 9083055--9083103 Score: 73
Period size: 17 Copynumber: 2.9 Consensus size: 17
9083045 AAAATTTCCT
9083055 TTTTTAGTAACTTTTTA
1 TTTTTAGTAACTTTTTA
9083072 -TTTTAGGTAACTTTTTA
1 TTTTTA-GTAACTTTTTA
*
9083089 TTTTTAGTAAGTTTT
1 TTTTTAGTAACTTTT
9083104 AGGGTTAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 5 0.17
17 19 0.66
18 5 0.17
ACGTcount: A:0.22, C:0.04, G:0.10, T:0.63
Consensus pattern (17 bp):
TTTTTAGTAACTTTTTA
Found at i:9083104 original size:16 final size:16
Alignment explanation
Indices: 9083055--9083104 Score: 57
Period size: 16 Copynumber: 3.0 Consensus size: 16
9083045 AAAATTTCCT
9083055 TTTTTAGTAACTTTT-
1 TTTTTAGTAACTTTTA
9083070 TATTTTAGGTAACTTTTTA
1 T-TTTTA-GTAAC-TTTTA
*
9083089 TTTTTAGTAAGTTTTA
1 TTTTTAGTAACTTTTA
9083105 GGGTTAATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
15 1 0.03
16 10 0.33
17 9 0.30
18 9 0.30
19 1 0.03
ACGTcount: A:0.24, C:0.04, G:0.10, T:0.62
Consensus pattern (16 bp):
TTTTTAGTAACTTTTA
Found at i:9084097 original size:5 final size:5
Alignment explanation
Indices: 9084087--9084130 Score: 72
Period size: 5 Copynumber: 9.0 Consensus size: 5
9084077 ATTGAGCTTG
*
9084087 TTATT TTATT TTA-T TTATT TTGTT TTATT TTATT TTATT TTATT
1 TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTATT
9084131 CCAAATAGTT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
4 4 0.11
5 32 0.89
ACGTcount: A:0.18, C:0.00, G:0.02, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:9084114 original size:19 final size:20
Alignment explanation
Indices: 9084090--9084127 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
9084080 GAGCTTGTTA
9084090 TTTTATTTTA-TTTATTTTG
1 TTTTATTTTATTTTATTTTG
9084109 TTTTATTTTATTTTATTTT
1 TTTTATTTTATTTTATTTT
9084128 ATTCCAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.82
Consensus pattern (20 bp):
TTTTATTTTATTTTATTTTG
Found at i:9084288 original size:14 final size:16
Alignment explanation
Indices: 9084268--9084302 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
9084258 GATGTTAGAA
*
9084268 TTTTTTTTAATTCTA-
1 TTTTTTTCAATTCTAG
9084283 TTTTTTTCAATTCTAG
1 TTTTTTTCAATTCTAG
9084299 TTTT
1 TTTT
9084303 AGTTTCATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.17, C:0.09, G:0.03, T:0.71
Consensus pattern (16 bp):
TTTTTTTCAATTCTAG
Found at i:9085929 original size:40 final size:40
Alignment explanation
Indices: 9085874--9085949 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
9085864 ATGAAAAGTT
* *
9085874 ATGTGATAAGTTTAAAAAGTTTTATAGATGTTAACCTAAC
1 ATGTGATAAGCTTAAAAAGTTTTATAAATGTTAACCTAAC
*
9085914 ATGTGATTAGCTTAAAAAGTTTTATAAATGTTAACC
1 ATGTGATAAGCTTAAAAAGTTTTATAAATGTTAACC
9085950 CAATTAATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.39, C:0.08, G:0.14, T:0.38
Consensus pattern (40 bp):
ATGTGATAAGCTTAAAAAGTTTTATAAATGTTAACCTAAC
Found at i:9092033 original size:17 final size:18
Alignment explanation
Indices: 9091994--9092034 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
9091984 AGATTTTATG
**
9091994 TATAAAATTTATGTATAA
1 TATAAAATTTATCCATAA
9092012 T-TAAAATTTA-CCATAA
1 TATAAAATTTATCCATAA
9092028 TATAAAA
1 TATAAAA
9092035 GGCCATTATG
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 5 0.25
17 14 0.70
18 1 0.05
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (18 bp):
TATAAAATTTATCCATAA
Found at i:9094349 original size:13 final size:13
Alignment explanation
Indices: 9094328--9094361 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
9094318 TAATCATATT
9094328 AATAATAAAAATA
1 AATAATAAAAATA
*
9094341 AATACTAAAAATAA
1 AATAATAAAAAT-A
9094355 AATAATA
1 AATAATA
9094362 TTATCAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (13 bp):
AATAATAAAAATA
Found at i:9094835 original size:23 final size:22
Alignment explanation
Indices: 9094795--9094842 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
9094785 CCCTTCTACC
** *
9094795 AATAAAAGAGTGACAGAAGAAAA
1 AATAAAAGAGAAAAAGAA-AAAA
9094818 AATAAAAGAGAAAAAGAAAAAA
1 AATAAAAGAGAAAAAGAAAAAA
9094840 AAT
1 AAT
9094843 GGATAAAAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.73, C:0.02, G:0.17, T:0.08
Consensus pattern (22 bp):
AATAAAAGAGAAAAAGAAAAAA
Found at i:9095050 original size:29 final size:29
Alignment explanation
Indices: 9094994--9095051 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
9094984 TGTTATTATA
*
9094994 TTAAAAATATAAGAACTAATAAGTTATTT
1 TTAAAAATATAAGAACTAATAAGATATTT
*
9095023 TTAAAAATATAAGGACTAA-AATGATATTT
1 TTAAAAATATAAGAACTAATAA-GATATTT
9095052 AATCCATCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 2 0.08
29 24 0.92
ACGTcount: A:0.52, C:0.03, G:0.09, T:0.36
Consensus pattern (29 bp):
TTAAAAATATAAGAACTAATAAGATATTT
Found at i:9096302 original size:12 final size:11
Alignment explanation
Indices: 9096275--9096320 Score: 51
Period size: 10 Copynumber: 4.3 Consensus size: 11
9096265 TATTTTTATT
9096275 ATTTATTTTAA
1 ATTTATTTTAA
*
9096286 TTTTATTTTAAA
1 ATTTATTTT-AA
*
9096298 ATTTA-TTTAT
1 ATTTATTTTAA
9096308 ATTTA-TTTAA
1 ATTTATTTTAA
9096318 ATT
1 ATT
9096321 CATATATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
10 13 0.43
11 11 0.37
12 6 0.20
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
ATTTATTTTAA
Found at i:9096313 original size:10 final size:10
Alignment explanation
Indices: 9096298--9096403 Score: 51
Period size: 10 Copynumber: 10.7 Consensus size: 10
9096288 TTATTTTAAA
9096298 ATTTATTTAT
1 ATTTATTTAT
*
9096308 ATTTATTTAA
1 ATTTATTTAT
* *
9096318 ATTCATATAT
1 ATTTATTTAT
**
9096328 ATTCGTTTATT
1 ATTTATTTA-T
* *
9096339 ATTTAATTAA
1 ATTTATTTAT
*
9096349 ATTTATTT-G
1 ATTTATTTAT
9096358 A-TTA--TA-
1 ATTTATTTAT
9096364 ATTTATTTATT
1 ATTTATTTA-T
*
9096375 ATTTATGGATAT
1 ATTTAT--TTAT
9096387 ATTTATTTAT
1 ATTTATTTAT
*
9096397 ATATATT
1 ATTTATT
9096404 CATGAACATA
Statistics
Matches: 72, Mismatches: 15, Indels: 18
0.69 0.14 0.17
Matches are distributed among these distances:
6 2 0.03
7 3 0.04
8 3 0.04
9 3 0.04
10 39 0.54
11 13 0.18
12 7 0.10
13 2 0.03
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (10 bp):
ATTTATTTAT
Found at i:9096356 original size:14 final size:15
Alignment explanation
Indices: 9096337--9096376 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
9096327 TATTCGTTTA
9096337 TTATTTAATTA-AAT
1 TTATTTAATTATAAT
*
9096351 TTATTTGATTATAAT
1 TTATTTAATTATAAT
9096366 TTATTT-ATTAT
1 TTATTTAATTAT
9096377 TTATGGATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 15 0.62
15 9 0.38
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (15 bp):
TTATTTAATTATAAT
Found at i:9096403 original size:26 final size:26
Alignment explanation
Indices: 9096364--9096428 Score: 85
Period size: 26 Copynumber: 2.5 Consensus size: 26
9096354 TTTGATTATA
* * *
9096364 ATTTATTTATTATTTATGGATATATTT
1 ATTTATTTA-TATTCATGAACATATTT
*
9096391 ATTTATATATATTCATGAACATATTT
1 ATTTATTTATATTCATGAACATATTT
9096417 ATTTATTTATAT
1 ATTTATTTATAT
9096429 ATGTACATGA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
26 25 0.76
27 8 0.24
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (26 bp):
ATTTATTTATATTCATGAACATATTT
Found at i:9096447 original size:26 final size:28
Alignment explanation
Indices: 9096383--9096460 Score: 72
Period size: 30 Copynumber: 2.8 Consensus size: 28
9096373 TTATTTATGG
* *
9096383 ATATATTTATTTATATATATTCATGAAC
1 ATATTTTTATTTATATATATACATGAAC
*
9096411 ATATTTATTTATTTATATATGTACATG-A-
1 ATA-TT-TTTATTTATATATATACATGAAC
* *
9096439 ATATTTTTACTTA-ATATTTACA
1 ATATTTTTATTTATATATATACA
9096461 AATAAATTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
25 8 0.19
26 7 0.16
27 2 0.05
28 6 0.14
29 2 0.05
30 18 0.42
ACGTcount: A:0.37, C:0.06, G:0.04, T:0.53
Consensus pattern (28 bp):
ATATTTTTATTTATATATATACATGAAC
Found at i:9097874 original size:2 final size:2
Alignment explanation
Indices: 9097867--9097899 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
9097857 TGTTTGGTTC
9097867 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
9097900 TTTCTCTCGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:9098458 original size:19 final size:20
Alignment explanation
Indices: 9098434--9098472 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
9098424 TTTTTTATAT
*
9098434 AAGCAGTCCATATTC-AAAG
1 AAGCAGCCCATATTCGAAAG
9098453 AAGCAGCCCATATTCGAAAG
1 AAGCAGCCCATATTCGAAAG
9098473 TACTGATACC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.41, C:0.23, G:0.18, T:0.18
Consensus pattern (20 bp):
AAGCAGCCCATATTCGAAAG
Found at i:9100312 original size:19 final size:20
Alignment explanation
Indices: 9100290--9100329 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
9100280 TGTATCTGAA
*
9100290 TTTTAATATTT-TTTTGTTG
1 TTTTAATATTTATATTGTTG
9100309 TTTTAATATTTATATTGTTG
1 TTTTAATATTTATATTGTTG
9100329 T
1 T
9100330 CAATTTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.20, C:0.00, G:0.10, T:0.70
Consensus pattern (20 bp):
TTTTAATATTTATATTGTTG
Found at i:9100551 original size:26 final size:25
Alignment explanation
Indices: 9100523--9100570 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
9100513 TAAAAAATAA
*
9100523 AAAATATAGGTTTGAAAATTTTATT
1 AAAATATAAGTTTGAAAATTTTATT
9100548 AAAATATAAGTTTGAAAATTTTA
1 AAAATATAAGTTTGAAAATTTTA
9100571 AATTTTTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (25 bp):
AAAATATAAGTTTGAAAATTTTATT
Found at i:9101294 original size:18 final size:18
Alignment explanation
Indices: 9101271--9101314 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
9101261 TAAAACTGAT
9101271 AATGTTACACCATGCCCC
1 AATGTTACACCATGCCCC
*
9101289 AATGTTACACCATGCTCC
1 AATGTTACACCATGCCCC
9101307 AATGTTAC
1 AATGTTAC
9101315 GGGTATGTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.30, C:0.32, G:0.11, T:0.27
Consensus pattern (18 bp):
AATGTTACACCATGCCCC
Found at i:9104354 original size:18 final size:18
Alignment explanation
Indices: 9104314--9104404 Score: 55
Period size: 18 Copynumber: 5.1 Consensus size: 18
9104304 CTTTTCATGG
*
9104314 TTATCCACCTCCATATGGTTA
1 TTATCCACCT-CAAAT-G-TA
9104335 TTATCCACCTCAAATGTA
1 TTATCCACCTCAAATGTA
** *
9104353 TTATTTACCACAAATGTA
1 TTATCCACCTCAAATGTA
* *
9104371 TCAT---CCTCAAATATA
1 TTATCCACCTCAAATGTA
*
9104386 TCT-TTCACCTCAAATGTA
1 T-TATCCACCTCAAATGTA
9104404 T
1 T
9104405 CAAGAACAAA
Statistics
Matches: 57, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
15 11 0.19
18 31 0.54
19 1 0.02
20 4 0.07
21 10 0.18
ACGTcount: A:0.32, C:0.25, G:0.05, T:0.37
Consensus pattern (18 bp):
TTATCCACCTCAAATGTA
Found at i:9104356 original size:21 final size:21
Alignment explanation
Indices: 9104314--9104357 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
9104304 CTTTTCATGG
* *
9104314 TTATCCACCTCCATATGGTTA
1 TTATCCACCTCCAAATGATTA
9104335 TTATCCACCT-CAAATGTATTA
1 TTATCCACCTCCAAATG-ATTA
9104356 TT
1 TT
9104358 TACCACAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.27, C:0.25, G:0.07, T:0.41
Consensus pattern (21 bp):
TTATCCACCTCCAAATGATTA
Found at i:9104405 original size:18 final size:18
Alignment explanation
Indices: 9104340--9104405 Score: 59
Period size: 18 Copynumber: 3.8 Consensus size: 18
9104330 GGTTATTATC
9104340 CACCTCAAATGTAT-TATT
1 CACCTCAAATGTATCT-TT
* * *
9104358 TACCACAAATGTATC-AT
1 CACCTCAAATGTATCTTT
*
9104375 --CCTCAAATATATCTTT
1 CACCTCAAATGTATCTTT
9104391 CACCTCAAATGTATC
1 CACCTCAAATGTATC
9104406 AAGAACAAAG
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
15 11 0.30
16 1 0.03
17 1 0.03
18 24 0.65
ACGTcount: A:0.35, C:0.26, G:0.05, T:0.35
Consensus pattern (18 bp):
CACCTCAAATGTATCTTT
Found at i:9105530 original size:60 final size:60
Alignment explanation
Indices: 9105437--9105556 Score: 240
Period size: 60 Copynumber: 2.0 Consensus size: 60
9105427 CTTTTTGCTT
9105437 CTCAGATGCTCATGAACATAGTTTATTTCAAGAAAAGGAGAGAAAGTGGTTCCAGGAGGA
1 CTCAGATGCTCATGAACATAGTTTATTTCAAGAAAAGGAGAGAAAGTGGTTCCAGGAGGA
9105497 CTCAGATGCTCATGAACATAGTTTATTTCAAGAAAAGGAGAGAAAGTGGTTCCAGGAGGA
1 CTCAGATGCTCATGAACATAGTTTATTTCAAGAAAAGGAGAGAAAGTGGTTCCAGGAGGA
9105557 AGCAGAAAAG
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.23
Consensus pattern (60 bp):
CTCAGATGCTCATGAACATAGTTTATTTCAAGAAAAGGAGAGAAAGTGGTTCCAGGAGGA
Done.