Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25818110
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 67000 characters in sequence are not A, C, G, or T
File 52 of 127
Found at i:10311729 original size:2 final size:2
Alignment explanation
Indices: 10311722--10311756 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
10311712 TTCTTCTTTC
10311722 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10311757 TGTGGGTGGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:10313519 original size:29 final size:28
Alignment explanation
Indices: 10313465--10313519 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 28
10313455 GCCAAAATGG
* *
10313465 AAAAAAATAGTATAACAACTTGAAAACA
1 AAAAAAATAGTATAACAACCTAAAAACA
10313493 AAAAACAATAG-ATCAACAACCTAAAAA
1 AAAAA-AATAGTAT-AACAACCTAAAAA
10313520 AGTTAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 7 0.30
29 16 0.70
ACGTcount: A:0.65, C:0.15, G:0.05, T:0.15
Consensus pattern (28 bp):
AAAAAAATAGTATAACAACCTAAAAACA
Found at i:10315272 original size:2 final size:2
Alignment explanation
Indices: 10315265--10315295 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
10315255 AAGAGAATGA
10315265 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10315296 CATGAATTCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10315691 original size:2 final size:2
Alignment explanation
Indices: 10315684--10315715 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
10315674 CATTGTAATC
10315684 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10315716 TAAAACATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10320933 original size:34 final size:32
Alignment explanation
Indices: 10320829--10320937 Score: 89
Period size: 34 Copynumber: 3.3 Consensus size: 32
10320819 GCATTGAAAC
* * *
10320829 TTTAAAATTTTCATTTTATGCTAACTTAACTGGG
1 TTTAAAA-CTTCATTTT-TGCCAACTTAACTGAG
* * *
10320863 TTTAAAACTT-ATTTGTGCCAAC-TAAATTA-
1 TTTAAAACTTCATTTTTGCCAACTTAACTGAG
10320892 TACTTAAAACTCTCATTTCTTGCCAACTTAACTGAG
1 T--TTAAAACT-TCATTT-TTGCCAACTTAACTGAG
10320928 TTTAAAACTT
1 TTTAAAACTT
10320938 TGTGCCAACT
Statistics
Matches: 59, Mismatches: 9, Indels: 15
0.71 0.11 0.18
Matches are distributed among these distances:
29 1 0.02
30 4 0.07
31 14 0.24
32 5 0.08
33 7 0.12
34 22 0.37
35 5 0.08
36 1 0.02
ACGTcount: A:0.33, C:0.17, G:0.08, T:0.42
Consensus pattern (32 bp):
TTTAAAACTTCATTTTTGCCAACTTAACTGAG
Found at i:10321079 original size:63 final size:62
Alignment explanation
Indices: 10320846--10321124 Score: 219
Period size: 61 Copynumber: 4.5 Consensus size: 62
10320836 TTTTCATTTT
* * * * *** *
10320846 ATGCTAACTTAACTGGGTTTAAAACTTATTTGTGCCAACTAAATTATACTT-AAAACTCTCATTT
1 ATGCCAACTTAATTGAGTTTAAAAC---TTTGTGCCAACTAGATTGGGCTTAAAAACTCT-ATCT
10320910 C
62 C
* * ** *
10320911 TTGCCAACTTAACTGAGTTTAAAACTTTGTGCCAACTAGATTGATCTTAGAAACTC-ATCTC
1 ATGCCAACTTAATTGAGTTTAAAACTTTGTGCCAACTAGATTGGGCTTAAAAACTCTATCTC
* * * * *
10320972 GTGCCAACTTGATT-AGGCTTAAAATTTTGTGTCAACTAGATTGGGCTTAAAAACTCTTATCTC
1 ATGCCAACTTAATTGA-GTTTAAAACTTTGTGCCAACTAGATTGGGCTTAAAAACTC-TATCTC
* * * * * *
10321035 ATGTCAATTTAATTGAGTTTAAAACTTAGTGCCAGCTAGGTTGGGCTT-AAAACTCTCGTCTC
1 ATGCCAACTTAATTGAGTTTAAAACTTTGTGCCAACTAGATTGGGCTTAAAAACTCT-ATCTC
*
10321097 ATGCCAACTTAACTG-GCTTTAAAA-TTTG
1 ATGCCAACTTAATTGAG-TTTAAAACTTTG
10321125 GGGCAAAATT
Statistics
Matches: 174, Mismatches: 33, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
60 1 0.01
61 54 0.31
62 49 0.28
63 47 0.27
64 1 0.01
65 22 0.13
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (62 bp):
ATGCCAACTTAATTGAGTTTAAAACTTTGTGCCAACTAGATTGGGCTTAAAAACTCTATCTC
Found at i:10321332 original size:16 final size:16
Alignment explanation
Indices: 10321313--10321346 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
10321303 TTATTGATAT
10321313 TTTTTC-CTTTCTTTTC
1 TTTTTCACTTT-TTTTC
10321329 TTTTTCACTTTTTTTC
1 TTTTTCACTTTTTTTC
10321345 TT
1 TT
10321347 GACAAACTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTCACTTTTTTTC
Found at i:10322567 original size:6 final size:6
Alignment explanation
Indices: 10322556--10322630 Score: 55
Period size: 6 Copynumber: 12.5 Consensus size: 6
10322546 TCTCTCTTCA
* * *
10322556 TTTTAT TTTTAT TTTACAT TTTTA- TTTTGT TTCTA- TTTTATT TTTTAT
1 TTTTAT TTTTAT TTT-TAT TTTTAT TTTTAT TTTTAT TTTTA-T TTTTAT
* * * *
10322604 TATTAT TATTAT TATTAT TATTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTT
10322631 ATATATTTTT
Statistics
Matches: 57, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
5 8 0.14
6 39 0.68
7 10 0.18
ACGTcount: A:0.21, C:0.03, G:0.01, T:0.75
Consensus pattern (6 bp):
TTTTAT
Found at i:10322608 original size:3 final size:3
Alignment explanation
Indices: 10322589--10322637 Score: 61
Period size: 3 Copynumber: 17.3 Consensus size: 3
10322579 ATTTTGTTTC
10322589 TAT T-T TAT T-T T-T TAT TAT TAT TAT TAT TAT TAT TAT TAT T-T TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
10322633 ATAT T
1 -TAT T
10322638 TTTTCTCTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
2 8 0.19
3 31 0.74
4 3 0.07
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TAT
Found at i:10322638 original size:9 final size:8
Alignment explanation
Indices: 10322589--10322661 Score: 52
Period size: 7 Copynumber: 9.8 Consensus size: 8
10322579 ATTTTGTTTC
10322589 TATTTTAT
1 TATTTTAT
10322597 T-TTTTAT
1 TATTTTAT
10322604 TA--TTAT
1 TATTTTAT
10322610 TA--TTAT
1 TATTTTAT
10322616 TATTATTAT
1 TATT-TTAT
10322625 TATTTTAT
1 TATTTTAT
10322633 ATATTTT-T
1 -TATTTTAT
* *
10322641 TCTCTT-T
1 TATTTTAT
*
10322648 TCTTTTAT
1 TATTTTAT
10322656 TATTTT
1 TATTTT
10322662 TTTTATCTTG
Statistics
Matches: 55, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
6 12 0.22
7 17 0.31
8 12 0.22
9 14 0.25
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (8 bp):
TATTTTAT
Found at i:10322665 original size:12 final size:12
Alignment explanation
Indices: 10322593--10322667 Score: 55
Period size: 12 Copynumber: 6.1 Consensus size: 12
10322583 TGTTTCTATT
10322593 TTATTTTTTATTA
1 TTATTTTTT-TTA
* *
10322606 TTATTATTATTA
1 TTATTTTTTTTA
10322618 TTATTATTATTTTA
1 TTATT-TT-TTTTA
*
10322632 TATATTTTTTCT-
1 T-TATTTTTTTTA
* *
10322644 CT-TTTCTTTTA
1 TTATTTTTTTTA
10322655 TTATTTTTTTTA
1 TTATTTTTTTTA
10322667 T
1 T
10322668 CTTGGGTATT
Statistics
Matches: 47, Mismatches: 10, Indels: 11
0.69 0.15 0.16
Matches are distributed among these distances:
10 6 0.13
11 2 0.04
12 17 0.36
13 11 0.23
14 7 0.15
15 4 0.09
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.75
Consensus pattern (12 bp):
TTATTTTTTTTA
Found at i:10323757 original size:6 final size:5
Alignment explanation
Indices: 10323721--10323799 Score: 65
Period size: 5 Copynumber: 15.6 Consensus size: 5
10323711 TTTAATATTC
* * *
10323721 TTTTA TCTTTA TTTTA TTTTTA TTTTG TTTTA CTTT- TTTTA ATTTA TTTTCA
1 TTTTA T-TTTA TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT-A
*
10323773 CTTTTA TTTTG TTTTA --TTA TTTTA TTT
1 -TTTTA TTTTA TTTTA TTTTA TTTTA TTT
10323800 AAATAAAATC
Statistics
Matches: 59, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
3 3 0.05
4 3 0.05
5 37 0.63
6 12 0.20
7 4 0.07
ACGTcount: A:0.16, C:0.05, G:0.03, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:10323775 original size:20 final size:19
Alignment explanation
Indices: 10323737--10323777 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
10323727 CTTTATTTTA
* *
10323737 TTTTTATTTTGTTTTACTT
1 TTTTTAATTTATTTTACTT
10323756 TTTTTAATTTATTTTCACTT
1 TTTTTAATTTATTTT-ACTT
10323776 TT
1 TT
10323778 ATTTTGTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.15, C:0.07, G:0.02, T:0.76
Consensus pattern (19 bp):
TTTTTAATTTATTTTACTT
Found at i:10323778 original size:36 final size:33
Alignment explanation
Indices: 10323728--10323800 Score: 101
Period size: 36 Copynumber: 2.1 Consensus size: 33
10323718 TTCTTTTATC
* *
10323728 TTTATTTTATTTTTATTTTGTTTTACTTTTTTTAA
1 TTTATTTTACTTTTATTTTGTTTTA-TTATTTT-A
10323763 TTTATTTTCACTTTTATTTTGTTTTATTATTTTA
1 TTTATTTT-ACTTTTATTTTGTTTTATTATTTTA
10323797 TTTA
1 TTTA
10323801 AATAAAATCC
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
34 5 0.14
35 14 0.40
36 16 0.46
ACGTcount: A:0.18, C:0.04, G:0.03, T:0.75
Consensus pattern (33 bp):
TTTATTTTACTTTTATTTTGTTTTATTATTTTA
Found at i:10323797 original size:30 final size:30
Alignment explanation
Indices: 10323729--10323799 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 30
10323719 TCTTTTATCT
* * *
10323729 TTATTTTATTTTTATTTTGTTTTACTTTTT
1 TTATTTTATTTTCATTTTATTTTACTTTTA
* *
10323759 TTAATTTATTTTCACTTTTATTTT-GTTTTA
1 TTATTTTATTTTCA-TTTTATTTTACTTTTA
10323789 TTATTTTATTT
1 TTATTTTATTT
10323800 AAATAAAATC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
30 26 0.76
31 8 0.24
ACGTcount: A:0.17, C:0.04, G:0.03, T:0.76
Consensus pattern (30 bp):
TTATTTTATTTTCATTTTATTTTACTTTTA
Found at i:10323895 original size:59 final size:58
Alignment explanation
Indices: 10323820--10324169 Score: 432
Period size: 59 Copynumber: 5.9 Consensus size: 58
10323810 CAAAAAATAT
* * *
10323820 ATAAAATTTCAAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAA
1 ATAAAGTTTC-AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
* * * *
10323879 ATCAAAGTTTCCAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAA
1 AT-AAAGTTTCAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
* *
10323938 ATCAAAGTTTCCAAAAAATATTTTTG-GAGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
1 AT-AAAGTTTCAAAAAAAGATTTTTGAG-GAAAAGTTGAAAGTATCAATTTTCCTTAAAA
* * *
10323997 ATAAAATTTCAAAAAAAAAGGTTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
1 ATAAAGTTTC--AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
* * * *
10324057 ATAAATTTTTAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAA
1 ATAAAGTTTCAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
* * * *
10324115 ATAAATTTTCAAAAAAAATAAATTTTTGAGAAAAAATTGAAAGTATCAATTTTCC
1 ATAAAGTTTC--AAAAAA-AGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
10324170 CTGCATAAAA
Statistics
Matches: 259, Mismatches: 24, Indels: 14
0.87 0.08 0.05
Matches are distributed among these distances:
58 61 0.24
59 103 0.40
60 64 0.25
61 31 0.12
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.34
Consensus pattern (58 bp):
ATAAAGTTTCAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
Found at i:10324123 original size:17 final size:18
Alignment explanation
Indices: 10324111--10324151 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
10324101 AATTTTTCTT
10324111 AAAAATAAA-TTTTCAAA
1 AAAAATAAATTTTTCAAA
* *
10324128 AAAAATAAATTTTTGAGA
1 AAAAATAAATTTTTCAAA
10324146 AAAAAT
1 AAAAAT
10324152 TGAAAGTATC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.29
Consensus pattern (18 bp):
AAAAATAAATTTTTCAAA
Found at i:10327339 original size:15 final size:16
Alignment explanation
Indices: 10327314--10327345 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
10327304 TTTGCATACA
10327314 TGCATTTTTCATTCAT
1 TGCATTTTTCATTCAT
10327330 TGCA-TTTTCATTCAT
1 TGCATTTTTCATTCAT
10327345 T
1 T
10327346 ACACTTAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.19, C:0.19, G:0.06, T:0.56
Consensus pattern (16 bp):
TGCATTTTTCATTCAT
Found at i:10334582 original size:8 final size:8
Alignment explanation
Indices: 10334581--10334618 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
10334571 AAAATGAAAA
10334581 AAAAAAT-
1 AAAAAATG
*
10334588 AAAAAACTA
1 AAAAAA-TG
10334597 AAAAAATG
1 AAAAAATG
10334605 AAAAAATG
1 AAAAAATG
10334613 AAAAAA
1 AAAAAA
10334619 AGTGAATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
7 6 0.21
8 16 0.57
9 6 0.21
ACGTcount: A:0.82, C:0.03, G:0.05, T:0.11
Consensus pattern (8 bp):
AAAAAATG
Found at i:10334599 original size:17 final size:18
Alignment explanation
Indices: 10334569--10334629 Score: 56
Period size: 18 Copynumber: 3.3 Consensus size: 18
10334559 ACTATGCTTA
10334569 AAAAAATGAAAAAAAAAAT-
1 AAAAAATG--AAAAAAAATG
10334588 AAAAAACT--AAAAAAATG
1 AAAAAA-TGAAAAAAAATG
*
10334605 AAAAAATGAAAAAAAGTG
1 AAAAAATGAAAAAAAATG
10334623 AATAAAA
1 AA-AAAA
10334630 AATGAGGATT
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
16 9 0.25
17 6 0.17
18 10 0.28
19 10 0.28
20 1 0.03
ACGTcount: A:0.79, C:0.02, G:0.08, T:0.11
Consensus pattern (18 bp):
AAAAAATGAAAAAAAATG
Found at i:10335569 original size:57 final size:56
Alignment explanation
Indices: 10335505--10335900 Score: 481
Period size: 57 Copynumber: 6.7 Consensus size: 56
10335495 TTGTGTAGGA
* *
10335505 AAAATTGATACTTTTAACTTTTTCCCAAAAATATTTTTT-AAATATTTATTTTTAAGT
1 AAAATTGATACTTTCAAC-TTTTCCCAAAAATATTTTTTGAAA-ATTTATTTTTAAGG
*
10335562 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTTTGAAAATTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCC-CAAAAATA----TTTTTTGAAAA-TTT-ATTTTTAAGG
*
10335625 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTGAAAATTTATTTTTAAGG
* * *
10335682 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTTTGGAAATTTTGATTTTCAAGA
1 AAAATTGATACTTTCAACTTTTCC-CAAAAATA----TTTTTT-GAAAATTT-ATTTTTAAGG
*
10335745 AAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTG-AAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCC-CAAAAA--TATTTTTTGAAAATTTATTTTTAAGG
*
10335803 AAAATTGACACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTGAAAATTTATTTTTAAGG
* *
10335860 AAAATTGATACTTTTAACTTTTCTCACAAAATATTTTTTGA
1 AAAATTGATACTTTCAACTTTTCCCA-AAAATATTTTTTGA
10335901 TTTTTTTATT
Statistics
Matches: 300, Mismatches: 18, Indels: 42
0.83 0.05 0.12
Matches are distributed among these distances:
56 15 0.05
57 118 0.39
58 40 0.13
59 15 0.05
60 1 0.00
61 19 0.06
62 13 0.04
63 78 0.26
65 1 0.00
ACGTcount: A:0.35, C:0.11, G:0.07, T:0.47
Consensus pattern (56 bp):
AAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTGAAAATTTATTTTTAAGG
Found at i:10335686 original size:120 final size:119
Alignment explanation
Indices: 10335505--10335899 Score: 565
Period size: 120 Copynumber: 3.3 Consensus size: 119
10335495 TTGTGTAGGA
* * *
10335505 AAAATTGATACTTTTAACTTTTTCCCAAAAATATTTTTT-AAATATTTATTTTTAAGTAAAATTG
1 AAAATTGATACTTTCAAC-TTTTCCCAAAAATATTTTTTGGAA-ATTTATTTTTAAGGAAAATTG
10335569 ATACTTTCAACTTTTCCTCAAAAATATTTTTTTTTTGAAAATTTTGATTTTCAAGG
64 ATACTTTCAACTTTTCCTCAAAAATATTTTTTTTTTGAAAATTTTGATTTTCAAGG
10335625 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAAGGAAAATTGA
1 AAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTGGAAATTTATTTTTAAGGAAAATTGA
* *
10335690 TACTTTCAACTTTTCCTCAAAAATATTTTTTTTTTGGAAATTTTGATTTTCAAGA
65 TACTTTCAACTTTTCCTCAAAAATATTTTTTTTTTGAAAATTTTGATTTTCAAGG
*
10335745 AAAATTGATACTTTCAACTTTTCCTCAAAAACCT-TTTTTTTGAAATTTATTTTTAAGGAAAATT
1 AAAATTGATACTTTCAACTTTTCC-CAAAAA--TATTTTTTGGAAATTTATTTTTAAGGAAAATT
* *
10335809 GACACTTTCAACTTTTCC-CTAAAAATA----TTTTTTGAAAA-TTT-ATTTTTAAGG
63 GATACTTTCAACTTTTCCTC-AAAAATATTTTTTTTTTGAAAATTTTGATTTTCAAGG
* *
10335860 AAAATTGATACTTTTAACTTTTCTCACAAAATATTTTTTG
1 AAAATTGATACTTTCAACTTTTCCCA-AAAATATTTTTTG
10335900 ATTTTTTTAT
Statistics
Matches: 254, Mismatches: 13, Indels: 22
0.88 0.04 0.08
Matches are distributed among these distances:
113 1 0.00
114 8 0.03
115 34 0.13
116 3 0.01
117 10 0.04
119 7 0.03
120 134 0.53
121 56 0.22
122 1 0.00
ACGTcount: A:0.35, C:0.11, G:0.07, T:0.47
Consensus pattern (119 bp):
AAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTGGAAATTTATTTTTAAGGAAAATTGAT
ACTTTCAACTTTTCCTCAAAAATATTTTTTTTTTGAAAATTTTGATTTTCAAGG
Found at i:10335831 original size:178 final size:181
Alignment explanation
Indices: 10335505--10335898 Score: 587
Period size: 178 Copynumber: 2.2 Consensus size: 181
10335495 TTGTGTAGGA
* *
10335505 AAAATTGATACTTTTAACTTTTTCC-CAAAAATA----TTTTTTAAATATTTATTTTTAAGTAAA
1 AAAATTGATACTTTTAAC-TTTTCCTCAAAAATATTTTTTTTTTAAATATTTATTTTCAAGAAAA
**
10335565 ATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTTTGAAAATTTTGATTTTCAAGGAAAAT
65 ATTGATACTTTCAACTTTTCCTCAAAAATACCTTTTTTTTGAAAATTTTGATTTTCAAGGAAAAT
* *
10335630 TGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAAGG
130 TGACACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAATTTATTTTTAAGG
*
10335682 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTTTGGAAAT-TTTGATTTTCAAGAA
1 AAAATTGATACTTTTAACTTTTCCTCAAAAATATTTTTTTTTT--AAATATTT-ATTTTCAAGAA
*
10335746 AAATTGATACTTTCAACTTTTCCTC-AAAA-ACCTTTTTTTTG-AAA-TTT-ATTTTTAAGGAAA
63 AAATTGATACTTTCAACTTTTCCTCAAAAATACCTTTTTTTTGAAAATTTTGATTTTCAAGGAAA
10335806 ATTGACACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAATTTATTTTTAAGG
128 ATTGACACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAATTTATTTTTAAGG
10335860 AAAATTGATACTTTTAACTTTT-CTCACAAAATATTTTTT
1 AAAATTGATACTTTTAACTTTTCCTCA-AAAATATTTTTT
10335899 GATTTTTTTA
Statistics
Matches: 199, Mismatches: 9, Indels: 17
0.88 0.04 0.08
Matches are distributed among these distances:
176 6 0.03
177 29 0.15
178 97 0.49
179 3 0.02
180 3 0.02
181 16 0.08
182 7 0.04
183 38 0.19
ACGTcount: A:0.35, C:0.11, G:0.07, T:0.47
Consensus pattern (181 bp):
AAAATTGATACTTTTAACTTTTCCTCAAAAATATTTTTTTTTTAAATATTTATTTTCAAGAAAAA
TTGATACTTTCAACTTTTCCTCAAAAATACCTTTTTTTTGAAAATTTTGATTTTCAAGGAAAATT
GACACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAATTTATTTTTAAGG
Found at i:10335974 original size:17 final size:17
Alignment explanation
Indices: 10335954--10335992 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
10335944 AAAAATAAAG
*
10335954 AAAAGTAAAACAAAAAT
1 AAAAATAAAACAAAAAT
* *
10335971 AAAAATAAGACAAAGAT
1 AAAAATAAAACAAAAAT
10335988 AAAAA
1 AAAAA
10335993 AAAGATTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.77, C:0.05, G:0.08, T:0.10
Consensus pattern (17 bp):
AAAAATAAAACAAAAAT
Found at i:10335997 original size:17 final size:17
Alignment explanation
Indices: 10335963--10335997 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
10335953 GAAAAGTAAA
*
10335963 ACAAAAATAAAAATAAG
1 ACAAAAATAAAAAAAAG
*
10335980 ACAAAGATAAAAAAAAG
1 ACAAAAATAAAAAAAAG
10335997 A
1 A
10335998 TTAAATAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.77, C:0.06, G:0.09, T:0.09
Consensus pattern (17 bp):
ACAAAAATAAAAAAAAG
Found at i:10336958 original size:18 final size:17
Alignment explanation
Indices: 10336914--10336961 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 17
10336904 AGAAAAAAAA
10336914 ATAATG-ATAATAATCAG
1 ATAATGAATAA-AATCAG
*
10336931 ATAATCAATAAAATCAG
1 ATAATGAATAAAATCAG
10336948 ATAAATGAATAAAA
1 AT-AATGAATAAAA
10336962 ATAAAATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 13 0.48
18 14 0.52
ACGTcount: A:0.60, C:0.06, G:0.08, T:0.25
Consensus pattern (17 bp):
ATAATGAATAAAATCAG
Found at i:10336983 original size:22 final size:24
Alignment explanation
Indices: 10336937--10336987 Score: 70
Period size: 22 Copynumber: 2.2 Consensus size: 24
10336927 TCAGATAATC
10336937 AATAAAATCAGATAAATGAATAAA
1 AATAAAATCAGATAAATGAATAAA
* *
10336961 AATAAAATTA-ATAGAT-AATAAA
1 AATAAAATCAGATAAATGAATAAA
10336983 AATAA
1 AATAA
10336988 GATAAACCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 11 0.44
23 5 0.20
24 9 0.36
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.24
Consensus pattern (24 bp):
AATAAAATCAGATAAATGAATAAA
Found at i:10337030 original size:10 final size:10
Alignment explanation
Indices: 10337012--10337146 Score: 61
Period size: 10 Copynumber: 13.4 Consensus size: 10
10337002 ATATTACAAG
*
10337012 ATAAAAAATA
1 ATAATAAATA
10337022 ATAATAAATAA
1 ATAATAAAT-A
*
10337033 ATTATAATATA
1 ATAATAA-ATA
10337044 ATAATAAAT-
1 ATAATAAATA
*
10337053 AT-ATAACTA
1 ATAATAAATA
10337062 TATAA-AAATA
1 -ATAATAAATA
*
10337072 CAT-ATACATA
1 -ATAATAAATA
* *
10337082 TTAACAGAA-A
1 ATAATA-AATA
* *
10337092 AGAA-AAAAA
1 ATAATAAATA
10337101 ATAA-AAATAA
1 ATAATAAAT-A
10337111 ATAAATAAAT-
1 AT-AATAAATA
10337121 ATACATATAATA
1 ATA-ATA-AATA
10337133 ATAATAAATA
1 ATAATAAATA
10337143 ATAA
1 ATAA
10337147 AATACATAAA
Statistics
Matches: 96, Mismatches: 14, Indels: 30
0.69 0.10 0.21
Matches are distributed among these distances:
8 7 0.07
9 13 0.14
10 43 0.45
11 24 0.25
12 9 0.09
ACGTcount: A:0.67, C:0.04, G:0.01, T:0.27
Consensus pattern (10 bp):
ATAATAAATA
Found at i:10337046 original size:19 final size:21
Alignment explanation
Indices: 10337022--10337077 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 21
10337012 ATAAAAAATA
10337022 ATAATAAATAAAT-TATAA-T
1 ATAATAAATAAATATATAACT
10337041 ATAAT-AATAAATATATAACT
1 ATAATAAATAAATATATAACT
* *
10337061 ATATAAAAATACATATA
1 ATA-ATAAATAAATATA
10337078 CATATTAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
18 7 0.23
19 10 0.32
20 4 0.13
21 1 0.03
22 9 0.29
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (21 bp):
ATAATAAATAAATATATAACT
Found at i:10337110 original size:82 final size:77
Alignment explanation
Indices: 10337009--10337186 Score: 193
Period size: 82 Copynumber: 2.3 Consensus size: 77
10336999 AAAATATTAC
* * *
10337009 AAGATAAAAAATAATAATAAATAAATTATAATAT--A-ATAATAAATATATAACTATATAAAAAT
1 AAGAAAAAAAATAAAAATAAATAAA-TA-AATATACATATAAT-AATA-ATAAATA-AT-AAAAT
* * *
10337071 ACATATACATATTAACAGAA
60 ACATA-AAATA-CAAAAGAA
10337091 AAGAAAAAAAATAAAAATAAATAAATAAATATACATATAATAATAATAAATAATAAAATACATAA
1 AAGAAAAAAAATAAAAATAAATAAATAAATATACATATAATAATAATAAATAATAAAATACATAA
10337156 AATACAAAAGAA
66 AATACAAAAGAA
*
10337168 AAGAAAGAAAA-AAAAATAA
1 AAGAAAAAAAATAAAAATAA
10337187 TACAAAGTAA
Statistics
Matches: 86, Mismatches: 7, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
76 8 0.09
77 16 0.19
78 4 0.05
79 10 0.12
80 7 0.08
81 8 0.09
82 28 0.33
83 5 0.06
ACGTcount: A:0.70, C:0.04, G:0.03, T:0.23
Consensus pattern (77 bp):
AAGAAAAAAAATAAAAATAAATAAATAAATATACATATAATAATAATAAATAATAAAATACATAA
AATACAAAAGAA
Found at i:10337136 original size:22 final size:22
Alignment explanation
Indices: 10337019--10337142 Score: 84
Period size: 22 Copynumber: 5.8 Consensus size: 22
10337009 AAGATAAAAA
10337019 ATAATAATAAATAAATTATA-AT
1 ATAATAATAAATAAA-TATACAT
*
10337041 ATAATAATAAATATATA-AC-T
1 ATAATAATAAATAAATATACAT
*
10337061 AT-ATAA-AAATACATATACAT
1 ATAATAATAAATAAATATACAT
* * * *
10337081 ATTAACAGA-AAAGAAA-AAAAAT
1 A-TAATA-ATAAATAAATATACAT
*
10337103 AAAAATAAATAAATAAATATACAT
1 -ATAAT-AATAAATAAATATACAT
10337127 ATAATAAT-AATAAATA
1 ATAATAATAAATAAATA
10337143 ATAAAATACA
Statistics
Matches: 79, Mismatches: 13, Indels: 21
0.70 0.12 0.19
Matches are distributed among these distances:
18 8 0.10
19 6 0.08
20 6 0.08
21 11 0.14
22 26 0.33
23 18 0.23
24 4 0.05
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.28
Consensus pattern (22 bp):
ATAATAATAAATAAATATACAT
Found at i:10337140 original size:29 final size:27
Alignment explanation
Indices: 10337098--10337164 Score: 89
Period size: 29 Copynumber: 2.4 Consensus size: 27
10337088 GAAAAGAAAA
10337098 AAAATAAAAATAAATAAATAAATATACAT
1 AAAATAAAAATAAAT-AATAAA-ATACAT
* *
10337127 ATAATAATAATAAATAATAAAATACAT
1 AAAATAAAAATAAATAATAAAATACAT
10337154 AAAATACAAAA
1 AAAATA-AAAA
10337165 GAAAAGAAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
27 11 0.33
28 9 0.27
29 13 0.39
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (27 bp):
AAAATAAAAATAAATAATAAAATACAT
Found at i:10337912 original size:41 final size:41
Alignment explanation
Indices: 10337867--10338121 Score: 267
Period size: 42 Copynumber: 6.1 Consensus size: 41
10337857 TGATTGTCAC
*
10337867 GGAGCAATTTACTTTTCAAAGTCGTGGTGCCTTTGTTTAGA
1 GGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGA
10337908 GGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAGA
1 GGAGCAATTTACTTT-TCAAAGTCGTGGTGCCTCTGTTTAGA
* * ** *
10337950 AGAGCAATTTACTTTGCCAAAGTCGTTATGCCTCTGTTTAAA
1 GGAGCAATTTACTTT-TCAAAGTCGTGGTGCCTCTGTTTAGA
* *
10337992 AGAGCAATTTACTTTTCAAAGTCGTGGTGCTTCTGTTTAGA
1 GGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGA
* ** * *** *
10338033 GGAGTAATTTTTTTTTCAAAGTTGTTAAGCCTCTGATTAGA
1 GGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGA
* * * * * **
10338074 GGAGCCATTTATGTTTCTCAAAGTCATTGAGCCTCTGCCTAGA
1 GGAGCAATTTA-CTTT-TCAAAGTCGTGGTGCCTCTGTTTAGA
10338117 GGAGC
1 GGAGC
10338122 TTTGATCAAA
Statistics
Matches: 180, Mismatches: 31, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
41 75 0.42
42 79 0.44
43 26 0.14
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.37
Consensus pattern (41 bp):
GGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGA
Found at i:10338027 original size:83 final size:83
Alignment explanation
Indices: 10337868--10338098 Score: 257
Period size: 83 Copynumber: 2.8 Consensus size: 83
10337858 GATTGTCACG
* * * * *
10337868 GAGCAATTTACTTTTCAAAGTCGTGGTGCCTTTGTTTAGAGGAGCAATTTACTTTCTCAAAGTCG
1 GAGCAATTTACTTTCCAAAGTCGTGATGCCTCTGTTTAAAAGAGCAATTTACTTTCTCAAAGTCG
10337933 TGGTGCCTCTGTTTAGAA
66 TGGTGCCTCTGTTTAGAA
*
10337951 GAGCAATTTACTTTGCCAAAGTCGTTATGCCTCTGTTTAAAAGAGCAATTTACTTT-TCAAAGTC
1 GAGCAATTTACTTT-CCAAAGTCGTGATGCCTCTGTTTAAAAGAGCAATTTACTTTCTCAAAGTC
* *
10338015 GTGGTGCTTCTGTTTAGAG
65 GTGGTGCCTCTGTTTAGAA
* ** * * * * * * * * *
10338034 GAGTAATTTTTTTTTCAAAGTTGTTAAGCCTCTGATTAGAGGAGCCATTTATGTTTCTCAAAGTC
1 GAGCAATTTACTTTCCAAAGTCGTGATGCCTCTGTTTAAAAGAGCAATTTA-CTTTCTCAAAGTC
10338099 ATTGAGCCTC
Statistics
Matches: 126, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
82 30 0.24
83 53 0.42
84 43 0.34
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.39
Consensus pattern (83 bp):
GAGCAATTTACTTTCCAAAGTCGTGATGCCTCTGTTTAAAAGAGCAATTTACTTTCTCAAAGTCG
TGGTGCCTCTGTTTAGAA
Found at i:10338108 original size:125 final size:125
Alignment explanation
Indices: 10337868--10338110 Score: 314
Period size: 125 Copynumber: 1.9 Consensus size: 125
10337858 GATTGTCACG
10337868 GAGCAATTTACTTTTCAAAGTCGTGGTGCCTTTGTTTAGAGGAGCAATTTACTTTCTCAAAGTCG
1 GAGCAATTTACTTTTCAAAGTCGTGGTGCCTTTGTTTAGAGGAGCAATTTACTTTCTCAAAGTCG
** * *
10337933 TGGTGCCTCTGTTTAGAAGAGCAATTTACTTTGCCAAAGTCGTTATGCCTCTGTTTAAAA
66 TGAAGCCTCTGATTAGAAGAGCAATTTACTTTGCCAAAGTCATTATGCCTCTGTTTAAAA
* * * *
10337993 GAGCAATTTACTTTTCAAAGTCGTGGTG-CTTCTGTTTAGAGGAGTAATTT-TTTTTTCAAAGTT
1 GAGCAATTTACTTTTCAAAGTCGTGGTGCCTT-TGTTTAGAGGAGCAATTTACTTTCTCAAAGTC
* * * *
10338056 GTTAAGCCTCTGATTAGAGGAGCCATTTA-TGTTTCTCAAAGTCATTGA-GCCTCTG
65 GTGAAGCCTCTGATTAGAAGAGCAATTTACT-TTGC-CAAAGTCATT-ATGCCTCTG
10338111 CCTAGAGGAG
Statistics
Matches: 102, Mismatches: 12, Indels: 8
0.84 0.10 0.07
Matches are distributed among these distances:
123 1 0.01
124 39 0.38
125 61 0.60
126 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.38
Consensus pattern (125 bp):
GAGCAATTTACTTTTCAAAGTCGTGGTGCCTTTGTTTAGAGGAGCAATTTACTTTCTCAAAGTCG
TGAAGCCTCTGATTAGAAGAGCAATTTACTTTGCCAAAGTCATTATGCCTCTGTTTAAAA
Found at i:10338147 original size:10 final size:9
Alignment explanation
Indices: 10338129--10338158 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
10338119 AGCTTTGATC
10338129 AAAAATAAA
1 AAAAATAAA
10338138 AAAAATTAAA
1 AAAAA-TAAA
10338148 AAAAATAAA
1 AAAAATAAA
10338157 AA
1 AA
10338159 GTAAAAAGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (9 bp):
AAAAATAAA
Found at i:10338350 original size:6 final size:6
Alignment explanation
Indices: 10338339--10338379 Score: 57
Period size: 6 Copynumber: 6.7 Consensus size: 6
10338329 TCTCTCTTCA
10338339 TTTTAT TTTTA- TTTTAT TTTTAT TTTTAT TATTATAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT T-TT-TAT TTTT
10338380 TTCTCTTTTC
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
5 5 0.16
6 19 0.59
7 4 0.12
8 4 0.12
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTTAT
Found at i:10338353 original size:5 final size:5
Alignment explanation
Indices: 10338338--10338405 Score: 50
Period size: 5 Copynumber: 13.4 Consensus size: 5
10338328 TTCTCTCTTC
* *
10338338 ATTTT ATTTTT ATTTT ATTTTT ATTTT -TATT ATTAT ATTTT -TTTCT
1 ATTTT A-TTTT ATTTT A-TTTT ATTTT ATTTT ATTTT ATTTT ATTT-T
* * *
10338384 CTTTT CTTTT ATTTT TTTTT AT
1 ATTTT ATTTT ATTTT ATTTT AT
10338406 CTTGGGTATT
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
4 6 0.12
5 32 0.63
6 13 0.25
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.79
Consensus pattern (5 bp):
ATTTT
Found at i:10338354 original size:11 final size:10
Alignment explanation
Indices: 10338338--10338405 Score: 64
Period size: 11 Copynumber: 6.2 Consensus size: 10
10338328 TTCTCTCTTC
10338338 ATTTTATTTTT
1 ATTTT-TTTTT
10338349 ATTTTATTTTT
1 ATTTT-TTTTT
10338360 ATTTTTATTATT
1 ATTTTT-TT-TT
10338372 ATATTTTTTTCT
1 AT-TTTTTTT-T
* *
10338384 CTTTTCTTTT
1 ATTTTTTTTT
10338394 ATTTTTTTTT
1 ATTTTTTTTT
10338404 AT
1 AT
10338406 CTTGGGTATT
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
10 12 0.24
11 25 0.51
12 8 0.16
13 4 0.08
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.79
Consensus pattern (10 bp):
ATTTTTTTTT
Found at i:10339441 original size:5 final size:5
Alignment explanation
Indices: 10339424--10339502 Score: 58
Period size: 5 Copynumber: 15.6 Consensus size: 5
10339414 TTTAATATTC
* *
10339424 TTTTA TCTTTA TTTTA TTTTTA TTTTTG TTTTA CTTT- TTTTA -TTTA
1 TTTTA T-TTTA TTTTA -TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA
*
10339470 TTTTCA CTTTTA TTTTG TTTTA --TTA TTTTA TTT
1 TTTT-A -TTTTA TTTTA TTTTA TTTTA TTTTA TTT
10339503 AAGTAAAATC
Statistics
Matches: 60, Mismatches: 6, Indels: 16
0.73 0.07 0.20
Matches are distributed among these distances:
3 3 0.05
4 7 0.12
5 29 0.48
6 17 0.28
7 4 0.07
ACGTcount: A:0.15, C:0.05, G:0.03, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:10339444 original size:17 final size:16
Alignment explanation
Indices: 10339424--10339493 Score: 59
Period size: 17 Copynumber: 4.1 Consensus size: 16
10339414 TTTAATATTC
10339424 TTTTATCTTTATTTTAT
1 TTTTAT-TTTATTTTAT
*
10339441 TTTTATTTTTGTTTTACT
1 TTTTA-TTTTATTTTA-T
* *
10339459 TTTTTTATTTATTTTCAC
1 TTTTAT-TTTATTTT-AT
*
10339477 TTTTATTTTGTTTTAT
1 TTTTATTTTATTTTAT
10339493 T
1 T
10339494 ATTTTATTTA
Statistics
Matches: 42, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
16 2 0.05
17 21 0.50
18 18 0.43
19 1 0.02
ACGTcount: A:0.14, C:0.06, G:0.03, T:0.77
Consensus pattern (16 bp):
TTTTATTTTATTTTAT
Found at i:10339470 original size:35 final size:34
Alignment explanation
Indices: 10339431--10339503 Score: 103
Period size: 35 Copynumber: 2.1 Consensus size: 34
10339421 TTCTTTTATC
* *
10339431 TTTATTTT-ATTTTTATTTTTGTTTTACTTTTTTTA
1 TTTATTTTCACTTTTA-TTTTGTTTTA-TTATTTTA
10339466 TTTATTTTCACTTTTATTTTGTTTTATTATTTTA
1 TTTATTTTCACTTTTATTTTGTTTTATTATTTTA
10339500 TTTA
1 TTTA
10339504 AGTAAAATCC
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
34 11 0.31
35 18 0.51
36 6 0.17
ACGTcount: A:0.16, C:0.04, G:0.03, T:0.77
Consensus pattern (34 bp):
TTTATTTTCACTTTTATTTTGTTTTATTATTTTA
Found at i:10339500 original size:30 final size:31
Alignment explanation
Indices: 10339432--10339502 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 31
10339422 TCTTTTATCT
* * * *
10339432 TTATTTTATTTTTATTTTTGTTTTACTTTTT
1 TTATTTTATTTTCACTTTTATTTTACTTTTA
*
10339463 TTA-TTTATTTTCACTTTTATTTT-GTTTTA
1 TTATTTTATTTTCACTTTTATTTTACTTTTA
10339492 TTATTTTATTT
1 TTATTTTATTT
10339503 AAGTAAAATC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
29 7 0.21
30 24 0.71
31 3 0.09
ACGTcount: A:0.15, C:0.04, G:0.03, T:0.77
Consensus pattern (31 bp):
TTATTTTATTTTCACTTTTATTTTACTTTTA
Found at i:10339597 original size:59 final size:59
Alignment explanation
Indices: 10339523--10339715 Score: 234
Period size: 58 Copynumber: 3.3 Consensus size: 59
10339513 CAAAAAATAT
* * *
10339523 ATAAAATTTCAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTT-TTGAAA
1 ATAAAGTTTCAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTTCTTAAAA
*
10339581 ATCAAAGTTTCCAAAAAA-CATTTTTG-GGAAAAAGTTGAAAGTATC-ATTTTTTCTTAAAA
1 AT-AAAGTTT-CAAAAAAGGATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTTTCTTAAAA
* * *
10339640 ATAAATTTTTAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAA-TTTTTCTCAAAA
1 ATAAAGTTTCAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTTCTTAAAA
*
10339698 TTAAAAGTTTTCAAAAAA
1 AT-AAAG-TTTCAAAAAA
10339716 TATTTTCAAT
Statistics
Matches: 115, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
57 6 0.05
58 52 0.45
59 41 0.36
60 16 0.14
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.36
Consensus pattern (59 bp):
ATAAAGTTTCAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTTCTTAAAA
Found at i:10343194 original size:25 final size:25
Alignment explanation
Indices: 10343144--10343204 Score: 63
Period size: 24 Copynumber: 2.4 Consensus size: 25
10343134 TATTTTGCTA
*
10343144 ATTTCCACTAAATTATTTTTTGAAAC
1 ATTT-CACTAAATTATTTTTTAAAAC
*
10343170 ATTTCACTAGATT-TTTTTTCAAAAC
1 ATTTCACTAAATTATTTTTT-AAAAC
*
10343195 -TTTTACTAAA
1 ATTTCACTAAA
10343205 CCACTTAAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
24 14 0.47
25 12 0.40
26 4 0.13
ACGTcount: A:0.34, C:0.15, G:0.03, T:0.48
Consensus pattern (25 bp):
ATTTCACTAAATTATTTTTTAAAAC
Found at i:10345185 original size:22 final size:24
Alignment explanation
Indices: 10345149--10345192 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
10345139 TTCTTAAATT
10345149 ATAAAAATTTATTTT-TTAAAAGG
1 ATAAAAATTTATTTTATTAAAAGG
*
10345172 ATAAAGATTT-TTTTATTAAAA
1 ATAAAAATTTATTTTATTAAAA
10345193 ATTATTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (24 bp):
ATAAAAATTTATTTTATTAAAAGG
Found at i:10348463 original size:29 final size:30
Alignment explanation
Indices: 10348399--10348466 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 30
10348389 ATTTTGTCTA
* *
10348399 ATTAAAGATTCAATTAAGTTGAAATAAAAG
1 ATTAAAAACTCAATTAAGTTGAAATAAAAG
*
10348429 ATTAAAAACTCAATTAA-TTGTAATAAAATG
1 ATTAAAAACTCAATTAAGTTGAAATAAAA-G
10348459 -TTAAAAAC
1 ATTAAAAAC
10348467 ATAAATAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 18 0.53
30 16 0.47
ACGTcount: A:0.54, C:0.06, G:0.09, T:0.31
Consensus pattern (30 bp):
ATTAAAAACTCAATTAAGTTGAAATAAAAG
Found at i:10348475 original size:29 final size:29
Alignment explanation
Indices: 10348421--10348476 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 29
10348411 ATTAAGTTGA
*
10348421 AATAAAAGATTAAAAACTCAATTAATTGT
1 AATAAAAGATTAAAAACTCAAATAATTGT
10348450 AATAAAATG-TTAAAAACAT-AAATAATT
1 AATAAAA-GATTAAAAAC-TCAAATAATT
10348477 TTATAATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
29 22 0.92
30 2 0.08
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.30
Consensus pattern (29 bp):
AATAAAAGATTAAAAACTCAAATAATTGT
Found at i:10348819 original size:2 final size:2
Alignment explanation
Indices: 10348814--10348838 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10348804 AGCATGTGCT
10348814 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
10348839 TAATACAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10356314 original size:19 final size:20
Alignment explanation
Indices: 10356266--10356315 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 20
10356256 ATTACAACTC
10356266 TTACTTTTTAT-AT-TTTTA
1 TTACTTTTTATAATATTTTA
*
10356284 TTA-ATTTT-TAATATTTT-
1 TTACTTTTTATAATATTTTA
10356301 TTACTTTTTATAATA
1 TTACTTTTTATAATA
10356316 AAAGCTACTA
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
16 1 0.04
17 9 0.35
18 11 0.42
19 5 0.19
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.68
Consensus pattern (20 bp):
TTACTTTTTATAATATTTTA
Found at i:10357126 original size:14 final size:15
Alignment explanation
Indices: 10357109--10357141 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
10357099 AATGAGAATA
10357109 TAAAAAACTT-TTAT
1 TAAAAAACTTATTAT
10357123 T-AAAAACTTATTAT
1 TAAAAAACTTATTAT
10357137 TAAAA
1 TAAAA
10357142 TTAATATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 8 0.47
14 6 0.35
15 3 0.18
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (15 bp):
TAAAAAACTTATTAT
Found at i:10357127 original size:13 final size:14
Alignment explanation
Indices: 10357111--10357141 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
10357101 TGAGAATATA
10357111 AAAAACTT-TTATT
1 AAAAACTTATTATT
10357124 AAAAACTTATTATT
1 AAAAACTTATTATT
10357138 AAAA
1 AAAA
10357142 TTAATATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (14 bp):
AAAAACTTATTATT
Found at i:10358515 original size:2 final size:2
Alignment explanation
Indices: 10358508--10358537 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
10358498 GTTTCAATGT
10358508 TA TA TA TA TA TA -A TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10358538 TGACTTAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10367505 original size:128 final size:127
Alignment explanation
Indices: 10367265--10367930 Score: 1002
Period size: 128 Copynumber: 5.2 Consensus size: 127
10367255 ACCCGAACTA
* * *
10367265 GGGCAGAATTTTCAAGACCTCCAGGCAAAACATTTTAATTTTTTTAAAAGTTTCATGGCCTCTAA
1 GGGCACAATTTTCAAGACCTCCGGGCAAAACATTTTAA-TTTTTTAAAAGTTTCATGGCCTCTGA
*
10367330 TTGGAGGAGCATTCAAAGATTTTGAAATCTCAAAGACCT--GTAGGCATAATCTTTAAGACC-TC
65 TTGGAGGAGCATTCAAAGATTTTGAAATCTCTAAGACCTCCG-A-GCATAATCTTTAAGACCTTC
*
10367392 TGAGCACAATTTTCAAGACCTCCGGGCAAAACATTTTAATTTTTTAAAATGTTTCATGGCCTCTG
1 -GGGCACAATTTTCAAGACCTCCGGGCAAAACATTTTAATTTTTTAAAA-GTTTCATGGCCTCTG
* * *
10367457 ATTAGAGGAGCATTCAAAGATTTTGAAATCTCTAAGACCTTCGAGCATAATCTTTAGGACCTTC
64 ATTGGAGGAGCATTCAAAGATTTTGAAATCTCTAAGACCTCCGAGCATAATCTTTAAGACCTTC
* * *
10367521 GGGCAAAATTTTCAAGACCTACGGGCAAAACATTTTAATTTTTTAAAAAGTTTCATGGCCTTTGA
1 GGGCACAATTTTCAAGACCTCCGGGCAAAACATTTTAATTTTTT-AAAAGTTTCATGGCCTCTGA
* *
10367586 TTGGAGGAGCATTCAAAGATTTTGAAATCTCTAAGACCTCCGAGCATAATCTTCAGGACCTTC
65 TTGGAGGAGCATTCAAAGATTTTGAAATCTCTAAGACCTCCGAGCATAATCTTTAAGACCTTC
* * *
10367649 GGGCA-AAATTTCAAGACCTACGGGCAAAACATTTTAATTTTTTAAAAAGTTTCATGGCCTTTGA
1 GGGCACAATTTTCAAGACCTCCGGGCAAAACATTTTAATTTTTT-AAAAGTTTCATGGCCTCTGA
*
10367713 TTGGAGGAGCATTCAAAGATTTTGAAATCTCTAAGACCTCCGAGCATAATCTTCAAGACCTTC
65 TTGGAGGAGCATTCAAAGATTTTGAAATCTCTAAGACCTCCGAGCATAATCTTTAAGACCTTC
*
10367776 GGGCACAATTTTCAAGACCTCCGGGCAAACCATTTTAATTTTTTTAAAAGTTTCATGGCCTCTGA
1 GGGCACAATTTTCAAGACCTCCGGGCAAAACATTTTAA-TTTTTTAAAAGTTTCATGGCCTCTGA
* * *
10367841 TTGGAGGAGCATTCAAAGATTTTGAAATCTCTAATACCTCCTGA-CATAATCTTTAAGGCCTTT
65 TTGGAGGAGCATTCAAAGATTTTGAAATCTCTAAGACCTCC-GAGCATAATCTTTAAGACCTTC
*
10367904 GGGCATAATCTTT-AAGACCTCCGGGCA
1 GGGCACAAT-TTTCAAGACCTCCGGGCA
10367931 TAATTTTCAA
Statistics
Matches: 504, Mismatches: 25, Indels: 18
0.92 0.05 0.03
Matches are distributed among these distances:
127 135 0.27
128 350 0.69
129 18 0.04
130 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.32
Consensus pattern (127 bp):
GGGCACAATTTTCAAGACCTCCGGGCAAAACATTTTAATTTTTTAAAAGTTTCATGGCCTCTGAT
TGGAGGAGCATTCAAAGATTTTGAAATCTCTAAGACCTCCGAGCATAATCTTTAAGACCTTC
Found at i:10367539 original size:22 final size:22
Alignment explanation
Indices: 10367482--10367550 Score: 77
Period size: 22 Copynumber: 3.1 Consensus size: 22
10367472 AAAGATTTTG
* *
10367482 AAATCTCTAAGACCTTCGAGCA
1 AAATCTTTAAGACCTTCGGGCA
* *
10367504 TAATCTTTAGGACCTTCGGGCA
1 AAATCTTTAAGACCTTCGGGCA
*
10367526 AAAT-TTTCAAGACCTACGGGCA
1 AAATCTTT-AAGACCTTCGGGCA
10367548 AAA
1 AAA
10367551 CATTTTAATT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
21 3 0.08
22 36 0.92
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (22 bp):
AAATCTTTAAGACCTTCGGGCA
Found at i:10367666 original size:21 final size:22
Alignment explanation
Indices: 10367610--10367677 Score: 68
Period size: 21 Copynumber: 3.1 Consensus size: 22
10367600 AAAGATTTTG
* *
10367610 AAATC-TCTAAGACCTCCGAGCA
1 AAATCTTC-AAGACCTACGGGCA
* * *
10367632 TAATCTTCAGGACCTTCGGGCA
1 AAATCTTCAAGACCTACGGGCA
10367654 AAAT-TTCAAGACCTACGGGCA
1 AAATCTTCAAGACCTACGGGCA
10367675 AAA
1 AAA
10367678 CATTTTAATT
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
21 18 0.47
22 18 0.47
23 2 0.05
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.21
Consensus pattern (22 bp):
AAATCTTCAAGACCTACGGGCA
Found at i:10367759 original size:255 final size:255
Alignment explanation
Indices: 10367265--10367930 Score: 1011
Period size: 255 Copynumber: 2.6 Consensus size: 255
10367255 ACCCGAACTA
* * *
10367265 GGGCAGAATTTTCAAGACCTCCAGGCAAAACATTTTAATTTTTTTAAAAGTTTCATGGCCTCTAA
1 GGGCAAAATTTTCAAGACCTCCGGGCAAAACATTTTAATTTTTTTAAAAGTTTCATGGCCTCTGA
*
10367330 TTGGAGGAGCATTCAAAGATTTTGAAATCTCAAAGACCT--GTAGGCATAATCTTTAA-GACC-T
66 TTGGAGGAGCATTCAAAGATTTTGAAATCTCTAAGACCTCCG-A-GCATAATC-TTAAGGACCTT
* * *
10367391 CTGAGCACAATTTTCAAGACCTCCGGGCAAAACATTTTAATTTTTTAAAATGTTTCATGGCCTCT
128 C-GGGCA-AAATTTCAAGACCTCCGGGCAAAACATTTTAATTTTTTAAAAAGTTTCATGGCCTCT
* * *
10367456 GATTAGAGGAGCATTCAAAGATTTTGAAATCTCTAAGACCTTCGAGCATAATCTTTAGGACCTTC
191 GATTAGAGGAGCATTCAAAGATTTTGAAATCTCTAAGACCTCCGAGCATAATCTTCAAGACCTTC
* * *
10367521 GGGCAAAATTTTCAAGACCTACGGGCAAAACATTTTAATTTTTTAAAAAGTTTCATGGCCTTTGA
1 GGGCAAAATTTTCAAGACCTCCGGGCAAAACATTTTAATTTTTTTAAAAGTTTCATGGCCTCTGA
*
10367586 TTGGAGGAGCATTCAAAGATTTTGAAATCTCTAAGACCTCCGAGCATAATCTTCAGGACCTTCGG
66 TTGGAGGAGCATTCAAAGATTTTGAAATCTCTAAGACCTCCGAGCATAATCTTAAGGACCTTCGG
* * *
10367651 GCAAAATTTCAAGACCTACGGGCAAAACATTTTAATTTTTTAAAAAGTTTCATGGCCTTTGATTG
131 GCAAAATTTCAAGACCTCCGGGCAAAACATTTTAATTTTTTAAAAAGTTTCATGGCCTCTGATTA
10367716 GAGGAGCATTCAAAGATTTTGAAATCTCTAAGACCTCCGAGCATAATCTTCAAGACCTTC
196 GAGGAGCATTCAAAGATTTTGAAATCTCTAAGACCTCCGAGCATAATCTTCAAGACCTTC
* *
10367776 GGGCACAATTTTCAAGACCTCCGGGCAAACCATTTTAATTTTTTTAAAAGTTTCATGGCCTCTGA
1 GGGCAAAATTTTCAAGACCTCCGGGCAAAACATTTTAATTTTTTTAAAAGTTTCATGGCCTCTGA
* *
10367841 TTGGAGGAGCATTCAAAGATTTTGAAATCTCTAATACCTCCTGA-CATAATCTTTAAGG-CCTTT
66 TTGGAGGAGCATTCAAAGATTTTGAAATCTCTAAGACCTCC-GAGCATAATC-TTAAGGACCTTC
* *
10367904 GGGCATAATCTTTAAGACCTCCGGGCA
129 GGGCAAAAT-TTCAAGACCTCCGGGCA
10367931 TAATTTTCAA
Statistics
Matches: 375, Mismatches: 28, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
255 236 0.63
256 135 0.36
257 3 0.01
258 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.32
Consensus pattern (255 bp):
GGGCAAAATTTTCAAGACCTCCGGGCAAAACATTTTAATTTTTTTAAAAGTTTCATGGCCTCTGA
TTGGAGGAGCATTCAAAGATTTTGAAATCTCTAAGACCTCCGAGCATAATCTTAAGGACCTTCGG
GCAAAATTTCAAGACCTCCGGGCAAAACATTTTAATTTTTTAAAAAGTTTCATGGCCTCTGATTA
GAGGAGCATTCAAAGATTTTGAAATCTCTAAGACCTCCGAGCATAATCTTCAAGACCTTC
Found at i:10367800 original size:22 final size:22
Alignment explanation
Indices: 10367745--10367802 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 22
10367735 TGAAATCTCT
* *
10367745 AAGACCTCCGAGCATAATCTTC
1 AAGACCTCCGGGCACAATCTTC
* *
10367767 AAGACCTTCGGGCACAATTTTC
1 AAGACCTCCGGGCACAATCTTC
10367789 AAGACCTCCGGGCA
1 AAGACCTCCGGGCA
10367803 AACCATTTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (22 bp):
AAGACCTCCGGGCACAATCTTC
Found at i:10367910 original size:22 final size:22
Alignment explanation
Indices: 10367866--10367943 Score: 77
Period size: 22 Copynumber: 3.5 Consensus size: 22
10367856 AAGATTTTGA
* * * *
10367866 AATCTCTAATACCTCCTGACAT
1 AATCTTTAAGACCTCCGGGCAT
* **
10367888 AATCTTTAAGGCCTTTGGGCAT
1 AATCTTTAAGACCTCCGGGCAT
10367910 AATCTTTAAGACCTCCGGGCAT
1 AATCTTTAAGACCTCCGGGCAT
10367932 AAT-TTTCAAGAC
1 AATCTTT-AAGAC
10367944 TTTAGGTAAA
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
21 3 0.07
22 42 0.93
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.32
Consensus pattern (22 bp):
AATCTTTAAGACCTCCGGGCAT
Found at i:10368037 original size:148 final size:150
Alignment explanation
Indices: 10367756--10368040 Score: 403
Period size: 148 Copynumber: 1.9 Consensus size: 150
10367746 AGACCTCCGA
* * *
10367756 GCATAATCTTCAAGACCTTCGGGCACAATTTTCAAGACCTCCGGGCAAACCATTTTAATTTTTTT
1 GCATAATCTTCAAGACCTCCGGGCACAATTTTCAAGACCTCCAGGCAAAACATTTTAATTTTTTT
* * *
10367821 AAAAGTTTCATGGCCTCTGATTGGAGGAGCATTCAAAGATTTTGAAATCTCTAATACCTCCTGAC
66 AAAAGTTTCATGGCCTCTGATTAGAGGAGCATTCAAAGATTTTGAAATCTCTAAAACCTCCAGAC
10367886 ATAATCTTTAAGGCCTTTGG
131 ATAATCTTTAAGGCCTTTGG
* * ** *
10367906 GCATAATCTTTAAGACCTCCGGGCATAATTTTCAAGA-CTTTAGGTAAAACATTTTAA-TTTTTT
1 GCATAATCTTCAAGACCTCCGGGCACAATTTTCAAGACCTCCAGGCAAAACATTTTAATTTTTTT
* * * * * *
10367969 AAAAGTTTCATGGCCTCTGATTAGAGGAGCATTTAAAGATTTTGAGATTTGTAAAACCTTCAGGC
66 AAAAGTTTCATGGCCTCTGATTAGAGGAGCATTCAAAGATTTTGAAATCTCTAAAACCTCCAGAC
10368034 ATAATCT
131 ATAATCT
10368041 CCAAACATTT
Statistics
Matches: 118, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
148 69 0.58
149 15 0.13
150 34 0.29
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (150 bp):
GCATAATCTTCAAGACCTCCGGGCACAATTTTCAAGACCTCCAGGCAAAACATTTTAATTTTTTT
AAAAGTTTCATGGCCTCTGATTAGAGGAGCATTCAAAGATTTTGAAATCTCTAAAACCTCCAGAC
ATAATCTTTAAGGCCTTTGG
Found at i:10368069 original size:88 final size:87
Alignment explanation
Indices: 10367970--10368201 Score: 315
Period size: 88 Copynumber: 2.6 Consensus size: 87
10367960 TAATTTTTTA
*
10367970 AAAGTTTCATGGCCTCTGATTAGAGGAGCATTTAAAGATTTTGAGATTTGTAAAACCTTC-AGGC
1 AAAGTTTCATGGCCTCTGATT-GAGGAGCATTTAAAGATTTTGAGATTTGTAAAACCTTCGA-AC
10368034 ATAATCTCCAAACATTTTAAACTC
64 ATAATCTCCAAACATTTTAAACTC
* *
10368058 AAAGTTTCATGGCCTCTGATTGGAGGAGCATTTAAAGATTTTAAGATTTGTAAGACCTTCGAACA
1 AAAGTTTCATGGCCTCTGATT-GAGGAGCATTTAAAGATTTTGAGATTTGTAAAACCTTCGAACA
* *
10368123 TAATCTCCAATCATTTTAAATTC
65 TAATCTCCAAACATTTTAAACTC
* * * * *
10368146 AAAGTTTTATGGCTTCTGATTGAAGGAGCATTCAAA-AGTTTTGTGATTCGTAAAAC
1 AAAGTTTCATGGCCTCTGATTG-AGGAGCATTTAAAGA-TTTTGAGATTTGTAAAAC
10368202 ATTTTAAATA
Statistics
Matches: 128, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
87 2 0.02
88 125 0.98
89 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.34
Consensus pattern (87 bp):
AAAGTTTCATGGCCTCTGATTGAGGAGCATTTAAAGATTTTGAGATTTGTAAAACCTTCGAACAT
AATCTCCAAACATTTTAAACTC
Found at i:10373887 original size:197 final size:200
Alignment explanation
Indices: 10373621--10374031 Score: 483
Period size: 197 Copynumber: 2.1 Consensus size: 200
10373611 AAACAAACAT
* * * * *
10373621 CAAACACAAAACACATAAGTAATGTATGATGAAAGAGCAAAAACCATGAAGCAAAGGAACTAAAA
1 CAAACACAAAACACATAAGGAATGCATGATGAAAGAGCAAAAACCATAAAACAAAGGAACCAAAA
* * * * * *
10373686 TGGGAGTTTTATGGGGGGCCGAACAGTTGCTGCCGTGGGAGGAAACAGGGGCTGTTCGGCAGCCC
66 TGGGAGCTTTATGGAGGGCCGAACAGCTGCTGCCATAGGAGAAAACAGGGGCTGTTCGGCAGCCC
* * * *
10373751 AAGAAAATGCTGAAAG-TGCAGCCAAAAAATGAAAATAGAA-ACAAAGT-A-A-AGCTTAGAACT
131 AAAAAAATGATG-AAGTTGCAACCAAAAAATGAAAACA-AAGACAAAGTAATAGAGCTTAGAACT
10373811 TTATTAA
194 TTATTAA
* * * *
10373818 CAAACACAAAGCACCTAAGGAATGCATGATGGGAA-AGCAAGAACCATAAAACAAAGGAACCAAA
1 CAAACACAAAACACATAAGGAATGCATGAT-GAAAGAGCAAAAACCATAAAACAAAGGAACCAAA
* * ** *
10373882 ATGGGAGCTTTATGGAGGGCCGAACGGCTGCTGTCATAGGAGAAAACAGGGGCTGTTCGGTGGTC
65 ATGGGAGCTTTATGGAGGGCCGAACAGCTGCTGCCATAGGAGAAAACAGGGGCTGTTCGGCAGCC
* * * *
10373947 CAAAAAAATGATGAAGTTTCAACCACAAAATGAAAGCAAAGACAAAGTAAATAGAGCTTGGAACT
130 CAAAAAAATGATGAAGTTGCAACCAAAAAATGAAAACAAAGACAAAGT-AATAGAGCTTAGAACT
10374012 TTATTAA
194 TTATTAA
*
10374019 CAAACACTAAACA
1 CAAACACAAAACA
10374032 TCAAGCATGC
Statistics
Matches: 177, Mismatches: 30, Indels: 10
0.82 0.14 0.05
Matches are distributed among these distances:
196 5 0.03
197 139 0.79
198 3 0.02
199 1 0.01
200 1 0.01
201 28 0.16
ACGTcount: A:0.43, C:0.16, G:0.24, T:0.17
Consensus pattern (200 bp):
CAAACACAAAACACATAAGGAATGCATGATGAAAGAGCAAAAACCATAAAACAAAGGAACCAAAA
TGGGAGCTTTATGGAGGGCCGAACAGCTGCTGCCATAGGAGAAAACAGGGGCTGTTCGGCAGCCC
AAAAAAATGATGAAGTTGCAACCAAAAAATGAAAACAAAGACAAAGTAATAGAGCTTAGAACTTT
ATTAA
Found at i:10377341 original size:25 final size:24
Alignment explanation
Indices: 10377291--10377342 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
10377281 CTTTATTAGG
** *
10377291 ATTTTTTCCTTTTTTCTCTTTACA
1 ATTTTTTCCTTTTTTCAATTCACA
*
10377315 ATTTTTTCTTTTTTTCAATTCATCA
1 ATTTTTTCCTTTTTTCAATTCA-CA
10377340 ATT
1 ATT
10377343 AGGTCAAATT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 18 0.78
25 5 0.22
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.65
Consensus pattern (24 bp):
ATTTTTTCCTTTTTTCAATTCACA
Found at i:10377561 original size:18 final size:18
Alignment explanation
Indices: 10377534--10377597 Score: 51
Period size: 18 Copynumber: 3.5 Consensus size: 18
10377524 TTTTTTTTTG
*
10377534 TTTTTAATTTTT-TA-AT
1 TTTTTAATTTTTAAATAT
10377550 TTTTTAATATTTAATAAATAT
1 TTTTTAAT-TTT--TAAATAT
* * *
10377571 TTTTTAATATTTGAATTT
1 TTTTTAATTTTTAAATAT
10377589 TTTTTAATT
1 TTTTTAATT
10377598 GGGACTCATT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
16 8 0.21
17 3 0.08
18 13 0.34
19 1 0.03
20 3 0.08
21 10 0.26
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTTTAATTTTTAAATAT
Found at i:10380691 original size:14 final size:14
Alignment explanation
Indices: 10380674--10380713 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
10380664 TTTTTTTTAC
*
10380674 CTTTCATACAATCT
1 CTTTCATACAATCG
*
10380688 CTTTCATACAACCG
1 CTTTCATACAATCG
10380702 CTTTCATACAAT
1 CTTTCATACAAT
10380714 TGACCCCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.30, C:0.30, G:0.03, T:0.38
Consensus pattern (14 bp):
CTTTCATACAATCG
Found at i:10382036 original size:16 final size:17
Alignment explanation
Indices: 10382015--10382047 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
10382005 AACATAGCAC
*
10382015 CCCTTTGGT-TTTTTTT
1 CCCTTTCGTATTTTTTT
10382031 CCCTTTCGTATTTTTTT
1 CCCTTTCGTATTTTTTT
10382048 GTATTTCTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.03, C:0.21, G:0.09, T:0.67
Consensus pattern (17 bp):
CCCTTTCGTATTTTTTT
Found at i:10385069 original size:24 final size:24
Alignment explanation
Indices: 10385042--10385130 Score: 83
Period size: 24 Copynumber: 3.5 Consensus size: 24
10385032 TATTTTTTAT
10385042 ATTTTTTTAATTTTTA-TTGAAAGG
1 ATTTTTTTAATTTTTATTTGAAA-G
*
10385066 ATTTTTTAAAAAATTTTTATTTGAGAAG
1 ATTTTTT---TAATTTTTATTTGA-AAG
*
10385094 ATATTTTT-ATTTTTATTTGGAAAG
1 ATTTTTTTAATTTTTATTT-GAAAG
*
10385118 ATTTTTTTTATTT
1 ATTTTTTTAATTT
10385131 GAATCTCTTT
Statistics
Matches: 54, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
24 27 0.50
25 6 0.11
27 8 0.15
28 11 0.20
29 2 0.04
ACGTcount: A:0.30, C:0.00, G:0.10, T:0.60
Consensus pattern (24 bp):
ATTTTTTTAATTTTTATTTGAAAG
Found at i:10386129 original size:3 final size:3
Alignment explanation
Indices: 10386123--10386213 Score: 82
Period size: 3 Copynumber: 30.3 Consensus size: 3
10386113 AAAAAATGAG
*
10386123 AAT AAT AAA AAT -AT AAAT ATAT AAT AAT AAT AAT AAT AAT AAT -AT
1 AAT AAT AAT AAT AAT -AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
10386168 AAT -AT AAT AA- ATAT AAT AAT AAT GAT AAGT AAT AGT ATT AAT AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT
10386213 A
1 A
10386214 GTATATTATA
Statistics
Matches: 73, Mismatches: 7, Indels: 16
0.76 0.07 0.17
Matches are distributed among these distances:
2 7 0.10
3 57 0.78
4 9 0.12
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:10386151 original size:25 final size:28
Alignment explanation
Indices: 10386123--10386213 Score: 82
Period size: 28 Copynumber: 3.2 Consensus size: 28
10386113 AAAAAATGAG
10386123 AATAATAAAAAT-ATAA-AT-ATATAAT
1 AATAATAAAAATAATAATATAATATAAT
*
10386148 AATAATAATAATAATAATATAATATAAT
1 AATAATAAAAATAATAATATAATATAAT
* * *
10386176 AA-ATATAATAATAATGATAAGTAATAGTATT
1 AATA-ATAAAAATAATAAT-A-TAATA-TAAT
10386207 AATAATA
1 AATAATA
10386214 GTATATTATA
Statistics
Matches: 55, Mismatches: 3, Indels: 10
0.81 0.04 0.15
Matches are distributed among these distances:
25 11 0.20
26 4 0.07
27 3 0.05
28 22 0.40
29 1 0.02
30 5 0.09
31 8 0.15
32 1 0.02
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (28 bp):
AATAATAAAAATAATAATATAATATAAT
Found at i:10386154 original size:28 final size:31
Alignment explanation
Indices: 10386124--10386189 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 31
10386114 AAAAATGAGA
10386124 ATAATAAAAAT-ATA-AATAT-AT-AATAATA
1 ATAATAAAAATAATATAATATAATAAAT-ATA
*
10386152 ATAATAATAATAATATAATATAATAAATATA
1 ATAATAAAAATAATATAATATAATAAATATA
10386183 ATAATAA
1 ATAATAA
10386190 TGATAAGTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
28 10 0.30
29 3 0.09
30 5 0.15
31 12 0.36
32 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (31 bp):
ATAATAAAAATAATATAATATAATAAATATA
Found at i:10386225 original size:25 final size:23
Alignment explanation
Indices: 10386138--10386227 Score: 78
Period size: 25 Copynumber: 3.7 Consensus size: 23
10386128 TAAAAATATA
*
10386138 AATATATAATAATAATAATAATAAT
1 AATATAT-ATAATAAT-ATATTAAT
10386163 AATATAATATAATAA-ATA-TAAT
1 AATAT-ATATAATAATATATTAAT
10386185 AATA-ATGATAAGTAATAGTATTAAT
1 AATATAT-ATAA-TAATA-TATTAAT
*
10386210 AATAGTATATTATAATAT
1 AATA-TATATAATAATAT
10386228 GTGCTATAAT
Statistics
Matches: 56, Mismatches: 1, Indels: 17
0.76 0.01 0.23
Matches are distributed among these distances:
20 2 0.04
21 4 0.07
22 11 0.20
23 4 0.07
24 3 0.05
25 25 0.45
26 5 0.09
27 2 0.04
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (23 bp):
AATATATATAATAATATATTAAT
Found at i:10386669 original size:119 final size:119
Alignment explanation
Indices: 10386462--10387394 Score: 841
Period size: 119 Copynumber: 7.8 Consensus size: 119
10386452 GACTAAATCG
* * * * * * * *
10386462 TAAGTCAAGATGAAGTGACCAAGA-TCGAATTGAAGTCAAAAATAAATAATCAGGATGAAACCAT
1 TAAGTCAAAATAAAGTGACCAAGACT-GAGTCGAGGTCAAAAGTAAATGATCAGGATGAAACCAC
* * * * * * * *
10386526 GAATCATCAGAGATAATTTGGACTGAGCCAAGATTAAGGGACCAAGACGAAATCA
65 GAATCATAAGAAATGATCTGGACTGAGCCAAGATCAAGGGACCGAGACAAAACCA
* * * * ** * * ** *
10386581 CAAGTCAAAATAAAATGATCGAGACCAAGTTGAGGTTAAAAGTAAATGATTGGGATGAAACCACA
1 TAAGTCAAAATAAAGTGACCAAGACTGAGTCGAGGTCAAAAGTAAATGATCAGGATGAAACCACG
* * * * * *
10386646 AATCATAAGAGATGATCTAGACTGAGCCAAGATCAAAGGACTGGGACGAAACCA
66 AATCATAAGAAATGATCTGGACTGAGCCAAGATCAAGGGACCGAGACAAAACCA
* * * * * * *
10386700 TAAGTCAAAATAAAGTAACCAAAATTGAGTCGAGGTCAAAAGTAAATGATCAAGATAAAATCATG
1 TAAGTCAAAATAAAGTGACCAAGACTGAGTCGAGGTCAAAAGTAAATGATCAGGATGAAACCACG
* * * * *
10386765 AATCATAAGAAACGATCTAGACTGAGCCAAGATCAAGAGACCGAGACAAGATCA
66 AATCATAAGAAATGATCTGGACTGAGCCAAGATCAAGGGACCGAGACAAAACCA
* * * * * ** *
10386819 TAAGTTAACATAAAGTGACTAAGATTGAGTCGAGGTCAAATGTAAATGATC-GGAACAGAATCAC
1 TAAGTCAAAATAAAGTGACCAAGACTGAGTCGAGGTCAAAAGTAAATGATCAGGATGA-AACCAC
* * * * * *
10386883 GAATCATAATAAATTATTTGGACTGAGCCAAGATCAAGGAACCGAGATAAAATCA
65 GAATCATAAGAAATGATCTGGACTGAGCCAAGATCAAGGGACCGAGACAAAACCA
* * * ** * * ** *
10386938 CAAGTCAACATAAAGTAACCAAGACCAAGTCGATGTCAAAAGTAAATAAAAAAGATGAAACCACG
1 TAAGTCAAAATAAAGTGACCAAGACTGAGTCGAGGTCAAAAGTAAATGATCAGGATGAAACCACG
* * * *
10387003 AATCATAAGAAATGATCTGGACTGAGCCAAAATAAATGGACCAAGACAAAACCA
66 AATCATAAGAAATGATCTGGACTGAGCCAAGATCAAGGGACCGAGACAAAACCA
* * * * * *
10387057 TAAGTCAACATAAAGTGACCAAGAGTGAGTCCAGGACAAAAGTAAATGATCAGGATGAAACTACA
1 TAAGTCAAAATAAAGTGACCAAGACTGAGTCGAGGTCAAAAGTAAATGATCAGGATGAAACCACG
* * * * * *
10387122 AATGATAAGAAATAATTTGGACTGAGCCAAGATTAAGGGATCGGGACAAAACCA
66 AATCATAAGAAATGATCTGGACTGAGCCAAGATCAAGGGACCGAGACAAAACCA
* * * * * *
10387176 TAAGTCAAAATAAAGTAACCAACACTGAGTTGAGGTTAAAAATAAATGATC-GAGATGAAATCAC
1 TAAGTCAAAATAAAGTGACCAAGACTGAGTCGAGGTCAAAAGTAAATGATCAG-GATGAAACCAC
* * * * *
10387240 GAATCATAA-AAGATAATCTGGACTGAGCCAAGATCAAAGGATCAAGATAAAACCA
65 GAATCATAAGAA-ATGATCTGGACTGAGCCAAGATCAAGGGACCGAGACAAAACCA
* * * * *
10387295 CAAGTTAAAATAAAATGACCAAGA-TCGAGTCGAGGTCAAAAGTAAATGATCGGGATGAAATCAC
1 TAAGTCAAAATAAAGTGACCAAGACT-GAGTCGAGGTCAAAAGTAAATGATCAGGATGAAACCAC
* * * *
10387359 AAATCATAAAAAATGATCTGAACTAAGCCAAGATCA
65 GAATCATAAGAAATGATCTGGACTGAGCCAAGATCA
10387395 GATAAGTGGA
Statistics
Matches: 653, Mismatches: 153, Indels: 16
0.79 0.19 0.02
Matches are distributed among these distances:
118 7 0.01
119 640 0.98
120 6 0.01
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.18
Consensus pattern (119 bp):
TAAGTCAAAATAAAGTGACCAAGACTGAGTCGAGGTCAAAAGTAAATGATCAGGATGAAACCACG
AATCATAAGAAATGATCTGGACTGAGCCAAGATCAAGGGACCGAGACAAAACCA
Found at i:10387132 original size:357 final size:355
Alignment explanation
Indices: 10386526--10387394 Score: 990
Period size: 357 Copynumber: 2.4 Consensus size: 355
10386516 ATGAAACCAT
* * * **
10386526 GAATCATCAGAGATAATTTGGACTGAGCCAAGATTAAGGGACCAAGACGAAATCACAAGTCAAAA
1 GAATCATAAAAGATAATTTGGACTGAGCCAAGATCAA-GGACCAAGATAAAATCACAAGTCAAAA
* * * * *
10386591 TAAAATGATCGAGACCAAGTTGAGGTTAAAAGTAAATGATTGGGATGAAACCACAAATCATAAGA
65 TAAAATGACCAAGACCAAGTCGAGGTCAAAAGTAAATGATAGGGATGAAACCACAAATCATAAGA
* * * *** *
10386656 GATGATCTAGACTGAGCCAAGATCAAAGGACTGGGACGAAACCATAAGTCAAAATAAAGTAACCA
130 AATGATCTGGACTGAGCCAAAATCAAAGGACCAAGACAAAACCATAAGTCAAAATAAAGTAACCA
* * * *
10386721 AAATTGAGTCGAGGTCAAAAGTAAATGATCAAGATAAAATCATGAATCATAAGAAACGATCTAGA
195 AAAGTGAGTCCAGGACAAAAGTAAATGATCAAGATAAAATCA-GAATCATAAGAAACAATCTAGA
* * * * * * * *
10386786 CTGAGCCAAGATCAAGAGACCGAGACAAGATCATAAGTTAACATAAAGTGACTAAGATTGAGTCG
259 CTGAGCCAAGATCAAGAGACCGAGACAAAACCATAAGTCAAAATAAAGTAACCAACACTGAGTCG
**
10386851 AGGTCAAATGTAAATGATCG-GAACAGAATCAC
324 AGGTCAAAAATAAATGATCGAGAACA-AATCAC
* * *
10386883 GAATCATAATAA-ATTATTTGGACTGAGCCAAGATCAAGGAACCGAGATAAAATCACAAGTCAAC
1 GAATCATAA-AAGATAATTTGGACTGAGCCAAGATCAAGG-ACCAAGATAAAATCACAAGTCAAA
* * * * * ** *
10386947 ATAAAGTAACCAAGACCAAGTCGATGTCAAAAGTAAATAAAAAAGATGAAACCACGAATCATAAG
64 ATAAAATGACCAAGACCAAGTCGAGGTCAAAAGTAAATGATAGGGATGAAACCACAAATCATAAG
* *
10387012 AAATGATCTGGACTGAGCCAAAAT-AAATGGACCAAGACAAAACCATAAGTCAACATAAAGTGAC
129 AAATGATCTGGACTGAGCCAAAATCAAA-GGACCAAGACAAAACCATAAGTCAAAATAAAGTAAC
* * * * * *
10387076 CAAGAGTGAGTCCAGGACAAAAGTAAATGATCAGGATGAAACTACA-AATGATAAGAAATAATTT
193 CAAAAGTGAGTCCAGGACAAAAGTAAATGATCAAGAT-AAAAT-CAGAATCATAAGAAACAATCT
* * * * *
10387140 GGACTGAGCCAAGATTAAGGGATCGGGACAAAACCATAAGTCAAAATAAAGTAACCAACACTGAG
256 AGACTGAGCCAAGATCAAGAGACCGAGACAAAACCATAAGTCAAAATAAAGTAACCAACACTGAG
* * **
10387205 TTGAGGTTAAAAATAAATGATCGAGATGAAATCAC
321 TCGAGGTCAAAAATAAATGATCGAGAACAAATCAC
* * * *
10387240 GAATCATAAAAGATAATCTGGACTGAGCCAAGATCAAAGGATCAAGATAAAACCACAAGTTAAAA
1 GAATCATAAAAGATAATTTGGACTGAGCCAAGATC-AAGGACCAAGATAAAATCACAAGTCAAAA
* * * * *
10387305 TAAAATGACCAAGATCGAGTCGAGGTCAAAAGTAAATGATCGGGATGAAATCACAAATCATAAAA
65 TAAAATGACCAAGACCAAGTCGAGGTCAAAAGTAAATGATAGGGATGAAACCACAAATCATAAGA
* * *
10387370 AATGATCTGAACTAAGCCAAGATCA
130 AATGATCTGGACTGAGCCAAAATCA
10387395 GATAAGTGGA
Statistics
Matches: 421, Mismatches: 82, Indels: 17
0.81 0.16 0.03
Matches are distributed among these distances:
356 7 0.02
357 399 0.95
358 13 0.03
359 2 0.00
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.18
Consensus pattern (355 bp):
GAATCATAAAAGATAATTTGGACTGAGCCAAGATCAAGGACCAAGATAAAATCACAAGTCAAAAT
AAAATGACCAAGACCAAGTCGAGGTCAAAAGTAAATGATAGGGATGAAACCACAAATCATAAGAA
ATGATCTGGACTGAGCCAAAATCAAAGGACCAAGACAAAACCATAAGTCAAAATAAAGTAACCAA
AAGTGAGTCCAGGACAAAAGTAAATGATCAAGATAAAATCAGAATCATAAGAAACAATCTAGACT
GAGCCAAGATCAAGAGACCGAGACAAAACCATAAGTCAAAATAAAGTAACCAACACTGAGTCGAG
GTCAAAAATAAATGATCGAGAACAAATCAC
Found at i:10387611 original size:41 final size:41
Alignment explanation
Indices: 10387549--10387646 Score: 124
Period size: 41 Copynumber: 2.4 Consensus size: 41
10387539 CATTTTAGTG
* * * *
10387549 AAAAAACCATCATTCATTAACCTGAATGCACGTTTTTGGCA
1 AAAAAACCATCATTCACTAACCTAAATGCACATCTTTGGCA
*
10387590 AAAAAACCATCTTTCACTAACCTAAATGCACATCTTTGGCA
1 AAAAAACCATCATTCACTAACCTAAATGCACATCTTTGGCA
* * *
10387631 GACAAACCATCGTTCA
1 AAAAAACCATCATTCA
10387647 TCAGCCTGAA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.38, C:0.26, G:0.10, T:0.27
Consensus pattern (41 bp):
AAAAAACCATCATTCACTAACCTAAATGCACATCTTTGGCA
Found at i:10398896 original size:25 final size:24
Alignment explanation
Indices: 10398855--10398913 Score: 66
Period size: 25 Copynumber: 2.5 Consensus size: 24
10398845 AAAATGGGTT
* *
10398855 AAAAAAT-AAAATCAAATCAAATC
1 AAAAAATAAAAATAAAATAAAATC
*
10398878 AAAAAATAAAAATAAAAATAAAATG
1 AAAAAATAAAAAT-AAAATAAAATC
*
10398903 AAAAAAGAAAA
1 AAAAAATAAAA
10398914 CTTGCGATCG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
23 7 0.23
24 5 0.17
25 18 0.60
ACGTcount: A:0.78, C:0.05, G:0.03, T:0.14
Consensus pattern (24 bp):
AAAAAATAAAAATAAAATAAAATC
Found at i:10399812 original size:3 final size:3
Alignment explanation
Indices: 10399806--10399861 Score: 53
Period size: 3 Copynumber: 19.0 Consensus size: 3
10399796 ATATAAATCT
* *
10399806 ATA ATA ATA ATA ATA GT- ATA AT- ATA ATA ATA ATG ATA AGTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA
* *
10399850 GTA TTA ATA ATA
1 ATA ATA ATA ATA
10399862 GTATATTATA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
2 3 0.07
3 37 0.86
4 3 0.07
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:10399814 original size:22 final size:22
Alignment explanation
Indices: 10399786--10399837 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
10399776 AAAAAATGTG
10399786 AATAATAAAAATA-TA-AATCTAT
1 AATAATAAAAATAGTATAA--TAT
*
10399808 AATAATAATAATAGTATAATAT
1 AATAATAAAAATAGTATAATAT
10399830 AATAATAA
1 AATAATAA
10399838 TGATAAGTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
22 23 0.85
23 2 0.07
24 2 0.07
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (22 bp):
AATAATAAAAATAGTATAATAT
Found at i:10399831 original size:19 final size:19
Alignment explanation
Indices: 10399809--10399874 Score: 71
Period size: 19 Copynumber: 3.3 Consensus size: 19
10399799 TAAATCTATA
10399809 ATAATAATAATAGTATAAT
1 ATAATAATAATAGTATAAT
10399828 ATAATAATAAT-GATAAGTAAT
1 ATAATAATAATAG-T-A-TAAT
* *
10399849 AGTATTAATAATAGTATATT
1 A-TAATAATAATAGTATAAT
10399869 ATAATA
1 ATAATA
10399875 TATACTAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
18 1 0.03
19 16 0.41
20 5 0.13
21 6 0.15
22 10 0.26
23 1 0.03
ACGTcount: A:0.55, C:0.00, G:0.08, T:0.38
Consensus pattern (19 bp):
ATAATAATAATAGTATAAT
Found at i:10399832 original size:41 final size:41
Alignment explanation
Indices: 10399787--10399874 Score: 106
Period size: 41 Copynumber: 2.1 Consensus size: 41
10399777 AAAAATGTGA
*
10399787 ATAATAAAAAT-ATAAATCTATAATAATAATAATAGTATAAT
1 ATAATAAAAATGATAAAT-AATAATAATAATAATAGTATAAT
* * * * *
10399828 ATAATAATAATGATAAGTAATAGTATTAATAATAGTATATT
1 ATAATAAAAATGATAAATAATAATAATAATAATAGTATAAT
10399869 ATAATA
1 ATAATA
10399875 TATACTAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
41 35 0.88
42 5 0.12
ACGTcount: A:0.57, C:0.01, G:0.06, T:0.36
Consensus pattern (41 bp):
ATAATAAAAATGATAAATAATAATAATAATAATAGTATAAT
Found at i:10399838 original size:22 final size:21
Alignment explanation
Indices: 10399805--10399876 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 21
10399795 AATATAAATC
10399805 TATAATAATAATAATAGTATAA
1 TATAATAATAAT-ATAGTATAA
*
10399827 TATAATAATAATGATAAGTAATAG
1 TATAATAATAAT-AT-AGT-ATAA
* *
10399851 TATTAATAATAGTATATTATAA
1 TA-TAATAATAATATAGTATAA
10399873 TATA
1 TATA
10399877 TACTAAAATA
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
21 2 0.05
22 19 0.45
23 5 0.12
24 7 0.17
25 9 0.21
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (21 bp):
TATAATAATAATATAGTATAA
Found at i:10399859 original size:16 final size:14
Alignment explanation
Indices: 10399809--10399878 Score: 60
Period size: 13 Copynumber: 5.2 Consensus size: 14
10399799 TAAATCTATA
10399809 ATAATAATAATAGT
1 ATAATAATAATAGT
*
10399823 ATAAT-ATAATAAT
1 ATAATAATAATAGT
*
10399836 AATGATAAGTAATAGT
1 -ATAATAA-TAATAGT
10399852 AT--TAATAATAGT
1 ATAATAATAATAGT
*
10399864 AT-ATTATAATA-T
1 ATAATAATAATAGT
10399876 ATA
1 ATA
10399879 CTAAAATAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
12 12 0.26
13 17 0.36
14 9 0.19
15 3 0.06
16 6 0.13
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (14 bp):
ATAATAATAATAGT
Found at i:10401364 original size:15 final size:16
Alignment explanation
Indices: 10401338--10401378 Score: 59
Period size: 15 Copynumber: 2.6 Consensus size: 16
10401328 TCTTTAATTT
10401338 TTTATAATTTTAAAA-A
1 TTTAT-ATTTTAAAATA
10401354 TTTATATTTTAAAATA
1 TTTATATTTTAAAATA
10401370 TTT-TATTTT
1 TTTATATTTT
10401379 TATGTGTGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 15 0.62
16 9 0.38
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTATATTTTAAAATA
Found at i:10401848 original size:15 final size:17
Alignment explanation
Indices: 10401808--10401845 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
10401798 TTTTTTATTT
10401808 TTTTTTAATATTTAATA
1 TTTTTTAATATTTAATA
*
10401825 TTTTTTAAT-TTTAGTA
1 TTTTTTAATATTTAATA
10401841 TTTTT
1 TTTTT
10401846 AATCCCATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (17 bp):
TTTTTTAATATTTAATA
Found at i:10403569 original size:17 final size:18
Alignment explanation
Indices: 10403549--10403582 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10403539 TCTTCCTTTT
*
10403549 TGTTTTT-TGTTTTTTAG
1 TGTTTTTCTATTTTTTAG
10403566 TGTTTTTCTATTTTTTA
1 TGTTTTTCTATTTTTTA
10403583 CATCAATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.09, C:0.03, G:0.12, T:0.76
Consensus pattern (18 bp):
TGTTTTTCTATTTTTTAG
Found at i:10404601 original size:16 final size:16
Alignment explanation
Indices: 10404577--10404612 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
10404567 TAACTTAAAT
*
10404577 AAAACTAAAAAACATG
1 AAAACTAAAAAACAAG
*
10404593 AAAAGTAAAAAACAAG
1 AAAACTAAAAAACAAG
10404609 AAAA
1 AAAA
10404613 TTTCAAAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.75, C:0.08, G:0.08, T:0.08
Consensus pattern (16 bp):
AAAACTAAAAAACAAG
Found at i:10405254 original size:19 final size:19
Alignment explanation
Indices: 10405232--10405268 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
10405222 AAGGTATAAA
* *
10405232 TTTCAAGTTAACGTGGGAT
1 TTTCAAGTCAAAGTGGGAT
10405251 TTTCAAGTCAAAGTGGGA
1 TTTCAAGTCAAAGTGGGA
10405269 AATCCCTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.11, G:0.27, T:0.32
Consensus pattern (19 bp):
TTTCAAGTCAAAGTGGGAT
Found at i:10409790 original size:100 final size:99
Alignment explanation
Indices: 10409610--10409810 Score: 294
Period size: 100 Copynumber: 2.0 Consensus size: 99
10409600 ACTTTGACTC
* * * * **
10409610 GACTTGCAAGCCCGTTTCATTAAACTTGACCTAACCCGGACCATCTCTTTGGCCTAGCAACCTTG
1 GACTTGCAAGCCCGATTCATCAAACTCGACCCAACCCGGACCATCTCTTAAGCCTAGCAACCTTG
*
10409675 TTCCTTGGGCGTGGTAGATTCTTTATTTTGGGCTA
66 TTCCTTGGCCGTGGTAGATTCTTT-TTTTGGGCTA
* *
10409710 GACTTGCTAGCCCGATTCATCAAACTCGACCCAACCCGGACCATCTCTTAAGCCTGGCAACCTTG
1 GACTTGCAAGCCCGATTCATCAAACTCGACCCAACCCGGACCATCTCTTAAGCCTAGCAACCTTG
* *
10409775 TTTCTTGGCCTTGGTAGATTCTTTTTTTGGGCTA
66 TTCCTTGGCCGTGGTAGATTCTTTTTTTGGGCTA
10409809 GA
1 GA
10409811 ACATAAAACC
Statistics
Matches: 90, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
99 12 0.13
100 78 0.87
ACGTcount: A:0.19, C:0.27, G:0.20, T:0.33
Consensus pattern (99 bp):
GACTTGCAAGCCCGATTCATCAAACTCGACCCAACCCGGACCATCTCTTAAGCCTAGCAACCTTG
TTCCTTGGCCGTGGTAGATTCTTTTTTTGGGCTA
Found at i:10409882 original size:8 final size:8
Alignment explanation
Indices: 10409868--10409898 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
10409858 CATGGTTCTT
10409868 TTTTATTA
1 TTTTATTA
*
10409876 CTTTATTA
1 TTTTATTA
10409884 TTTTATTA
1 TTTTATTA
10409892 TTTTATT
1 TTTTATT
10409899 TTATTTTTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (8 bp):
TTTTATTA
Found at i:10409889 original size:16 final size:15
Alignment explanation
Indices: 10409866--10409915 Score: 64
Period size: 16 Copynumber: 3.2 Consensus size: 15
10409856 TTCATGGTTC
10409866 TTTTTTATTACTTTA
1 TTTTTTATTACTTTA
*
10409881 TTATTTTATTATTTTA
1 TT-TTTTATTACTTTA
*
10409897 TTTTATTTTTACTTTA
1 TTTT-TTATTACTTTA
10409913 TTT
1 TTT
10409916 CATTTCCCTG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
15 4 0.13
16 26 0.87
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTTTATTACTTTA
Found at i:10410459 original size:21 final size:21
Alignment explanation
Indices: 10410430--10410473 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
10410420 ATGCCAAGTG
*
10410430 TTTAT-TTTTCTT-TTCT-TT
1 TTTATGTTTTTTTCTTCTATT
10410448 TTTATGTTTTTTTCTTCTATT
1 TTTATGTTTTTTTCTTCTATT
10410469 TTTAT
1 TTTAT
10410474 ATATTTAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 5 0.23
19 6 0.27
20 4 0.18
21 7 0.32
ACGTcount: A:0.09, C:0.09, G:0.02, T:0.80
Consensus pattern (21 bp):
TTTATGTTTTTTTCTTCTATT
Found at i:10410462 original size:17 final size:18
Alignment explanation
Indices: 10410430--10410463 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10410420 ATGCCAAGTG
*
10410430 TTTATTTTTCTTTTCTTT
1 TTTATGTTTCTTTTCTTT
10410448 TTTATGTTT-TTTTCTT
1 TTTATGTTTCTTTTCTT
10410464 CTATTTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.06, C:0.09, G:0.03, T:0.82
Consensus pattern (18 bp):
TTTATGTTTCTTTTCTTT
Found at i:10410573 original size:13 final size:14
Alignment explanation
Indices: 10410555--10410585 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
10410545 TATTCGATTC
10410555 TTTTTTTTTTAC-T
1 TTTTTTTTTTACAT
10410568 TTTTTTTTTTACAT
1 TTTTTTTTTTACAT
10410582 TTTT
1 TTTT
10410586 CATATGTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.10, C:0.06, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTTTTTTTTACAT
Found at i:10411121 original size:146 final size:147
Alignment explanation
Indices: 10410790--10411080 Score: 455
Period size: 146 Copynumber: 2.0 Consensus size: 147
10410780 ATATTAACAG
* * **
10410790 ACTGTTAATGTTACATCCAAATTTGATTTTATT-TTTTTTGTG-CACTTTCCTTTTTTTAGTTTT
1 ACTGTTAATGTTACATCCAAATTTAATTTTTTTCTTTTTTGTGCCA-TTTTTTTTTTTTAGTTTT
10410853 TTATTTTTTGAAAATCTATAATATAAAATTTTCAAAAAAAGCTTTATCAATATTAATGTTGCATA
65 TTATTTTTTGAAAATCTATAATATAAAATTTTCAAAAAAAGCTTTATCAATATTAATGTTGCATA
10410918 ACAACTTAACTTTCTTCC
130 ACAACTTAACTTTCTTCC
*
10410936 ACTGTTAATGTTACATCCAAATTTAATTTTTTTCTTTTTTGTGCCATTTTTTTTTTTTTGTTTTT
1 ACTGTTAATGTTACATCCAAATTTAATTTTTTTCTTTTTTGTGCCATTTTTTTTTTTTAGTTTTT
* * *
10411001 TATTTTTTG-AAATCTATATTATAAAATTTTCAAAAAAA-CTTTAATCAATGTTAATGTTGCATG
66 TATTTTTTGAAAATCTATAATATAAAATTTTCAAAAAAAGCTTT-ATCAATATTAATGTTGCATA
*
10411064 ACAATTTAACTTTCTTC
130 ACAACTTAACTTTCTTC
10411081 ATTTTTATTT
Statistics
Matches: 133, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
145 4 0.03
146 93 0.70
147 34 0.26
148 2 0.02
ACGTcount: A:0.30, C:0.12, G:0.07, T:0.52
Consensus pattern (147 bp):
ACTGTTAATGTTACATCCAAATTTAATTTTTTTCTTTTTTGTGCCATTTTTTTTTTTTAGTTTTT
TATTTTTTGAAAATCTATAATATAAAATTTTCAAAAAAAGCTTTATCAATATTAATGTTGCATAA
CAACTTAACTTTCTTCC
Found at i:10414899 original size:37 final size:38
Alignment explanation
Indices: 10414844--10414919 Score: 127
Period size: 37 Copynumber: 2.0 Consensus size: 38
10414834 TATATGTGCA
*
10414844 AAAAGGTGATTTCATACATATAGAAGGAA-GAAAGGAG
1 AAAAGGTGATTCCATACATATAGAAGGAATGAAAGGAG
*
10414881 AAAAGGTGATTCCGTACATATAGAAGGAATGAAAGGAG
1 AAAAGGTGATTCCATACATATAGAAGGAATGAAAGGAG
10414919 A
1 A
10414920 GTGAGGCCTG
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
37 27 0.75
38 9 0.25
ACGTcount: A:0.47, C:0.07, G:0.28, T:0.18
Consensus pattern (38 bp):
AAAAGGTGATTCCATACATATAGAAGGAATGAAAGGAG
Found at i:10434174 original size:310 final size:308
Alignment explanation
Indices: 10433682--10434453 Score: 950
Period size: 310 Copynumber: 2.5 Consensus size: 308
10433672 TTCTGCTACG
* *
10433682 AGCTCCTTATTTACTCCAGATGTGCTATCACACTTGTCAATGCATTGCCAATTAGCCCTGACATC
1 AGCTCCTTATTTACTCCAGATGTGATATCACACTTGTCATTGCATTGCCAATTAGCCCTGACATC
* * * * *
10433747 TTGAATTTTA-T-T-TTCTCTCAGCTTCATTGTGCCACTTTTTGATGGAGCTTCAGTTTTCCTGA
66 TTGAAATTTATTCTCTTCTCTCAGCTTCATTGTGCCACTTGTTGATGGAGCATCAGGTATCCTGA
* *
10433809 CAAGCATACTCATTCTACATTCACCTTCACTCGAAAGGAACAATCCACCATTATTGCCTCCTGTA
131 CAAGCATA-TCATTCTACATTCACCTACACTCGAAAGGAACAATCCACCATTATTGCCTCCTGCA
* * * *
10433874 GGTTCCAATCCATCATTATTCCAGCCACTGATTTCATTAAAATCCAGTCCATCAAGCCAGCTAAA
195 GGTTCCAATCCATCATTATTCCAGCCACTGATTTCATCAAAATCCAGTCCACCAAGCAAGCAAAA
* * * * * *
10433939 ATCTAAGTCCTCCAAATGGTCAACTTTAGTTCCTG-TCTCTGGTATAATC
260 AACTAAGTCATCCAAAGGGTCAACTTTAGTTCCAGAT-TCTGGTACAAAC
10433988 AGCTCCCTTATTTACTCCAGATGTGATATCACACTTGTCATTGCATTGCCAATTAGCCCTGACAT
1 AGCT-CCTTATTTACTCCAGATGTGATATCACACTTGTCATTGCATTGCCAATTAGCCCTGACAT
* *
10434053 CTTGAACTTTATTCTCTTCTCTCAACTTCATTGTGCCACTGCTGGTTGATGGAGCATC-GGTATC
65 CTTGAAATTTATTCTCTTCTCTCAGCTTCATTGTGCCACT--T-GTTGATGGAGCATCAGGTATC
* **
10434117 CTTGACAAGC-T-TCATTCTACATTCACCTACATTCGAAAGGGCCAATCCACCATTATTGCCTCC
127 C-TGACAAGCATATCATTCTACATTCACCTACACTCGAAAGGAACAATCCACCATTATTGCCTCC
10434180 TGCAGGTTCCAATCCATCATTATTCCAGCCACTGATTTCATCAAAATCCAGTCCACCAAGCAAGC
191 TGCAGGTTCCAATCCATCATTATTCCAGCCACTGATTTCATCAAAATCCAGTCCACCAAGCAAGC
* * ** *
10434245 AAAAAACTGATTCATTTAAAGGGTCATCTTTAGTTCCAGATTCTGGTACAAAC
256 AAAAAACTAAGTCATCCAAAGGGTCAACTTTAGTTCCAGATTCTGGTACAAAC
* * * * * * * * * *
10434298 AGCTCCTTGTTCACTCCAGATATGATATCACAATTGTAATCGTATTCCCAATTAGCTCTGCCATC
1 AGCTCCTTATTTACTCCAGATGTGATATCACACTTGTCATTGCATTGCCAATTAGCCCTGACATC
* * * * * * *
10434363 TCGAAATTTATGCTCTCCTCTCAGCTTCTTTTTGCCACTTGTTGA-GGAAGCTTCA-GTATCCCG
66 TTGAAATTTATTCTCTTCTCTCAGCTTCATTGTGCCACTTGTTGATGG-AGCATCAGGTATCCTG
* * *
10434426 AGCAAGTAGATTCATTCTAGATTCACCT
130 A-CAAGCATA-TCATTCTACATTCACCT
10434454 TCATTCAAAA
Statistics
Matches: 401, Mismatches: 50, Indels: 27
0.84 0.10 0.06
Matches are distributed among these distances:
305 4 0.01
306 24 0.06
307 69 0.17
308 1 0.00
309 100 0.25
310 175 0.44
311 1 0.00
312 7 0.02
313 20 0.05
ACGTcount: A:0.26, C:0.27, G:0.14, T:0.33
Consensus pattern (308 bp):
AGCTCCTTATTTACTCCAGATGTGATATCACACTTGTCATTGCATTGCCAATTAGCCCTGACATC
TTGAAATTTATTCTCTTCTCTCAGCTTCATTGTGCCACTTGTTGATGGAGCATCAGGTATCCTGA
CAAGCATATCATTCTACATTCACCTACACTCGAAAGGAACAATCCACCATTATTGCCTCCTGCAG
GTTCCAATCCATCATTATTCCAGCCACTGATTTCATCAAAATCCAGTCCACCAAGCAAGCAAAAA
ACTAAGTCATCCAAAGGGTCAACTTTAGTTCCAGATTCTGGTACAAAC
Found at i:10437416 original size:13 final size:13
Alignment explanation
Indices: 10437394--10437418 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10437384 TTTCTTCCTT
10437394 TTTTTTCTTTTTA
1 TTTTTTCTTTTTA
10437407 TTTTTTCTTTTT
1 TTTTTTCTTTTT
10437419 TTGTCAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.08, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTCTTTTTA
Found at i:10438293 original size:19 final size:19
Alignment explanation
Indices: 10438269--10438328 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 19
10438259 AAATTGTTTC
10438269 TTTTTTTTTATTTTTTAAA
1 TTTTTTTTTATTTTTTAAA
* ***
10438288 TTTTTTGTTTGTTTTTTCCC
1 TTTTTT-TTTATTTTTTAAA
* *
10438308 TTTTCTTTTATTTTTTTAA
1 TTTTTTTTTATTTTTTAAA
10438327 TT
1 TT
10438329 AGATCATTTT
Statistics
Matches: 31, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.12, C:0.07, G:0.03, T:0.78
Consensus pattern (19 bp):
TTTTTTTTTATTTTTTAAA
Found at i:10438413 original size:20 final size:21
Alignment explanation
Indices: 10438384--10438424 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
10438374 GTACCATTCT
*
10438384 TATTTGTTTATTT-TCTTTTA
1 TATTTATTTATTTATCTTTTA
10438404 TATTTATTTATTTATCTTTTA
1 TATTTATTTATTTATCTTTTA
10438425 ATTAAATCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.20, C:0.05, G:0.02, T:0.73
Consensus pattern (21 bp):
TATTTATTTATTTATCTTTTA
Found at i:10438960 original size:23 final size:25
Alignment explanation
Indices: 10438916--10438963 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
10438906 AAAATAAAAA
10438916 AATAATGAAAAATAATATATTTTAAT
1 AATAATGAAAAAT-ATATATTTTAAT
*
10438942 AATAATGTAAAAT-TA-ATTTTAA
1 AATAATGAAAAATATATATTTTAA
10438964 ATTTTTATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 7 0.33
24 2 0.10
26 12 0.57
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (25 bp):
AATAATGAAAAATATATATTTTAAT
Found at i:10447431 original size:134 final size:134
Alignment explanation
Indices: 10447191--10447459 Score: 450
Period size: 134 Copynumber: 2.0 Consensus size: 134
10447181 TGACTGTAAG
* *
10447191 AAGTTACTGTAAGGAATTAGTTGTTATGAAGTCATGCATACCTTCAGAAAAGGAAACATTTGTGC
1 AAGTTACTGTAAGGAATTAGTTGCTATGAAGTCATGCATACCTTCAGAAAAGGAAACACTTGTGC
*
10447256 TGATGCTTTGGCTCATTTTGGTAGTGATCGCTTTGCAACTTTTGAATATTATGAAAACCTTTTTG
66 TGATGCTCTGGCTCATTTTGGTAGTGATCGCTTTGCAACTTTTGAATATTATGAAAACCTTTTTG
10447321 TGTT
131 TGTT
* *
10447325 AAGTTACTGTAAGGAATTAGTTGCTATGAAGTCATGCATACCTTTAGAGAAGGAAACACTTGTGC
1 AAGTTACTGTAAGGAATTAGTTGCTATGAAGTCATGCATACCTTCAGAAAAGGAAACACTTGTGC
* *
10447390 TGATGCTCTGGC-CTATTTTGGTAGTGATCGCTTTGTAACTTTTTAATATTATGAAAACCTTTTT
66 TGATGCTCTGGCTC-ATTTTGGTAGTGATCGCTTTGCAACTTTTGAATATTATGAAAACCTTTTT
*
10447454 TTGTT
130 GTGTT
10447459 A
1 A
10447460 TTTCAAGAAC
Statistics
Matches: 126, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
133 1 0.01
134 125 0.99
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.39
Consensus pattern (134 bp):
AAGTTACTGTAAGGAATTAGTTGCTATGAAGTCATGCATACCTTCAGAAAAGGAAACACTTGTGC
TGATGCTCTGGCTCATTTTGGTAGTGATCGCTTTGCAACTTTTGAATATTATGAAAACCTTTTTG
TGTT
Found at i:10460821 original size:30 final size:30
Alignment explanation
Indices: 10460782--10460855 Score: 78
Period size: 30 Copynumber: 2.5 Consensus size: 30
10460772 ATTAATTATT
* *
10460782 TAAT-TTTTTATTTATATATATTTATATAA
1 TAATATTTTTATTTATATATATTTAAAAAA
* ** *
10460811 TGATATTTTTAAATATTTATATTTAAAAAA
1 TAATATTTTTATTTATATATATTTAAAAAA
10460841 TAATATTTTATATTT
1 TAATATTTT-TATTT
10460856 TAAAAAATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
29 3 0.09
30 28 0.82
31 3 0.09
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (30 bp):
TAATATTTTTATTTATATATATTTAAAAAA
Found at i:10460852 original size:21 final size:22
Alignment explanation
Indices: 10460822--10460873 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
10460812 GATATTTTTA
10460822 AATA-TTTATA-TTTAAAAAAT
1 AATATTTTATATTTTAAAAAAT
10460842 AATATTTTATATTTTAAAAAAT
1 AATATTTTATATTTTAAAAAAT
10460864 AATATTTTAT
1 AATATTTTAT
10460874 TAATTTCGGG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 4 0.13
21 6 0.20
22 20 0.67
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
AATATTTTATATTTTAAAAAAT
Found at i:10462700 original size:13 final size:14
Alignment explanation
Indices: 10462682--10462710 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
10462672 CTCTCCCAAA
10462682 TTTAAAA-ATCTTT
1 TTTAAAATATCTTT
10462695 TTTAAAATATCTTT
1 TTTAAAATATCTTT
10462709 TT
1 TT
10462711 AGCATTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (14 bp):
TTTAAAATATCTTT
Found at i:10463671 original size:23 final size:24
Alignment explanation
Indices: 10463625--10463674 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
10463615 TATTTCAAGA
* *
10463625 TATATATTTTATTATTAATTTAAT
1 TATATATATTATTATTAATATAAT
10463649 TATATATATTA-TATTAATATAAT
1 TATATATATTATTATTAATATAAT
10463672 TAT
1 TAT
10463675 TATTTAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 14 0.58
24 10 0.42
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (24 bp):
TATATATATTATTATTAATATAAT
Found at i:10464398 original size:45 final size:45
Alignment explanation
Indices: 10464343--10464429 Score: 131
Period size: 45 Copynumber: 1.9 Consensus size: 45
10464333 TATCTGAGTA
* *
10464343 GATGGCAGAATTGAAAAATAACAAGG-CGAGATCATCATCTGGTTC
1 GATGGCAGAATTGAAAAATAAC-AGGACGAAACCATCATCTGGTTC
*
10464388 GATGGCAGAATTGGAAAATAACAGGACGAAACCATCATCTGG
1 GATGGCAGAATTGAAAAATAACAGGACGAAACCATCATCTGG
10464430 GTCAATGTTC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 3 0.08
45 35 0.92
ACGTcount: A:0.39, C:0.16, G:0.25, T:0.20
Consensus pattern (45 bp):
GATGGCAGAATTGAAAAATAACAGGACGAAACCATCATCTGGTTC
Found at i:10479509 original size:145 final size:145
Alignment explanation
Indices: 10479303--10479570 Score: 351
Period size: 145 Copynumber: 1.8 Consensus size: 145
10479293 AACCTTGATT
* * * * *
10479303 GTACCTCAAAAAATGTGAAAATACAAAAATGCCCTTTAAGGGTAATTTCATAATTTGACCTTCTT
1 GTACCTCAAAAAATGTGAAAATACAAAAATACCCCTTAAGGGTAATTTCATAAATTAACCTTCAT
* * * * * * *
10479368 GAGGTTGATTTTTCGTAAAACTTTTTAGATCATGTTTTTATAATATTTGATGATTTTTTGGTGCT
66 GAGGTCGAATTTTCATAAAAATTTTTAGATCATGATTTCATAATATTTCATGATTTTTTGGTGCT
10479433 TTCAAAACTATAGCA
131 TTCAAAACTATAGCA
** **
10479448 GTACCTCAAAAGGTGT-AAAATTATC-AAAATACCCCTTAAGGGTAATTTTGTAAATTAACCTTC
1 GTACCTCAAAAAATGTGAAAA-TA-CAAAAATACCCCTTAAGGGTAATTTCATAAATTAACCTTC
*
10479511 ATGAGGTCGAATTTTCATAAAAATTTTTAGATCTTGATTTCATAATATTTCATGATTTTT
64 ATGAGGTCGAATTTTCATAAAAATTTTTAGATCATGATTTCATAATATTTCATGATTTTT
10479571 GATGATTTAA
Statistics
Matches: 104, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
144 4 0.04
145 99 0.95
146 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.40
Consensus pattern (145 bp):
GTACCTCAAAAAATGTGAAAATACAAAAATACCCCTTAAGGGTAATTTCATAAATTAACCTTCAT
GAGGTCGAATTTTCATAAAAATTTTTAGATCATGATTTCATAATATTTCATGATTTTTTGGTGCT
TTCAAAACTATAGCA
Found at i:10481879 original size:3 final size:3
Alignment explanation
Indices: 10481871--10481927 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
10481861 AACGCAAACG
10481871 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
10481919 TAA TAA TAA
1 TAA TAA TAA
10481928 ACAACTCAAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:10482420 original size:26 final size:26
Alignment explanation
Indices: 10482386--10482437 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10482376 TTATCAAACA
*
10482386 AAAT-TTTTTAATAAATTATTTAAATT
1 AAATATTTTGAAT-AATTATTTAAATT
*
10482412 AAATATTTTGGATAATTATTTAAATT
1 AAATATTTTGAATAATTATTTAAATT
10482438 GAATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 17 0.74
27 6 0.26
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (26 bp):
AAATATTTTGAATAATTATTTAAATT
Found at i:10482637 original size:28 final size:27
Alignment explanation
Indices: 10482585--10482637 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
10482575 AATAATTTTA
*
10482585 TTTAATAATTTATTTAAATTTAATATT
1 TTTAATAATTTATTTAAATTAAATATT
10482612 TTTAGATAA-TTATTTAAATTCAAATA
1 TTTA-ATAATTTATTTAAATT-AAATA
10482638 AAAATATATC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 15 0.65
28 8 0.35
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (27 bp):
TTTAATAATTTATTTAAATTAAATATT
Found at i:10485239 original size:41 final size:40
Alignment explanation
Indices: 10485154--10485241 Score: 97
Period size: 41 Copynumber: 2.1 Consensus size: 40
10485144 AGCAATTTTA
* **
10485154 AAATTTGAACAAAAATCATATAAAAAATTAGTTTATAATTT
1 AAATTTGAACAAAAATCATATAAAAAATTAG-TTAAAAAAT
* *
10485195 AAATTTTAACAAAAATCATATATAAAATTAG-TAAAACCAAT
1 AAATTTGAACAAAAATCATATAAAAAATTAGTTAAAA--AAT
10485236 AAATTT
1 AAATTT
10485242 ATTGTGTATA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
39 4 0.10
41 36 0.90
ACGTcount: A:0.56, C:0.07, G:0.03, T:0.34
Consensus pattern (40 bp):
AAATTTGAACAAAAATCATATAAAAAATTAGTTAAAAAAT
Found at i:10496028 original size:44 final size:44
Alignment explanation
Indices: 10495979--10496070 Score: 139
Period size: 44 Copynumber: 2.1 Consensus size: 44
10495969 AATTATATTT
* *
10495979 ATTTAAAAATTGAGTTGCTCATTTAAATACGAAGATTTGTTTAA
1 ATTTAAAAATTGAGTTACTCATTTAAATACGAAGATTTGTTCAA
* * *
10496023 ATTTAAAGATTGAGTTATTCATTTAAATATGAAGATTTGTTCAA
1 ATTTAAAAATTGAGTTACTCATTTAAATACGAAGATTTGTTCAA
10496067 ATTT
1 ATTT
10496071 TATAAGGATT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.43
Consensus pattern (44 bp):
ATTTAAAAATTGAGTTACTCATTTAAATACGAAGATTTGTTCAA
Found at i:10496310 original size:17 final size:18
Alignment explanation
Indices: 10496290--10496325 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
10496280 AAATTTTATA
10496290 TTTTAT-TAAATTTAAAT
1 TTTTATATAAATTTAAAT
*
10496307 TTTTATATATATTTAAAT
1 TTTTATATAAATTTAAAT
10496325 T
1 T
10496326 AAATATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTTATATAAATTTAAAT
Found at i:10496319 original size:23 final size:24
Alignment explanation
Indices: 10496283--10496329 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
10496273 AAATAAAAAA
*
10496283 TTTTATATTTTA-TTAAATTTAAAT
1 TTTTATATTATATTTAAA-TTAAAT
10496307 TTTTATA-TATATTTAAATTAAAT
1 TTTTATATTATATTTAAATTAAAT
10496330 ATAATTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (24 bp):
TTTTATATTATATTTAAATTAAAT
Found at i:10496341 original size:15 final size:15
Alignment explanation
Indices: 10496289--10496361 Score: 60
Period size: 15 Copynumber: 4.9 Consensus size: 15
10496279 AAAATTTTAT
*
10496289 ATTTTATTAAATTTA
1 ATTTTATTAAATATA
* *
10496304 AATTT-TTATATAT-
1 ATTTTATTAAATATA
*
10496317 ATTTAAATTAAATATA
1 ATTT-TATTAAATATA
*
10496333 ATTTTATTAAATTTA
1 ATTTTATTAAATATA
* *
10496348 ATTTAATTATATAT
1 ATTTTATTAAATAT
10496362 TTTTCAATAT
Statistics
Matches: 44, Mismatches: 11, Indels: 6
0.72 0.18 0.10
Matches are distributed among these distances:
13 3 0.07
14 6 0.14
15 31 0.70
16 4 0.09
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTTTATTAAATATA
Found at i:10496353 original size:26 final size:28
Alignment explanation
Indices: 10496307--10496364 Score: 75
Period size: 26 Copynumber: 2.1 Consensus size: 28
10496297 AAATTTAAAT
*
10496307 TTTTATATATATTTAAATTAAATATA-A
1 TTTTATATAAATTTAAATTAAATATATA
* *
10496334 TTTTAT-TAAATTTAATTTAATTATATA
1 TTTTATATAAATTTAAATTAAATATATA
10496361 TTTT
1 TTTT
10496365 TCAATATATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 16 0.59
27 11 0.41
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (28 bp):
TTTTATATAAATTTAAATTAAATATATA
Found at i:10504064 original size:10 final size:10
Alignment explanation
Indices: 10504040--10504086 Score: 51
Period size: 10 Copynumber: 4.8 Consensus size: 10
10504030 TAACATTAAA
*
10504040 TAAAAAATTT
1 TAAAAATTTT
10504050 T-AAAATTTT
1 TAAAAATTTT
* *
10504059 TAAAAAATCT
1 TAAAAATTTT
*
10504069 TAAATATTTT
1 TAAAAATTTT
10504079 TAAAAATT
1 TAAAAATT
10504087 ATAAAAATAT
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
9 8 0.28
10 21 0.72
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (10 bp):
TAAAAATTTT
Found at i:10504064 original size:20 final size:20
Alignment explanation
Indices: 10504040--10504084 Score: 74
Period size: 19 Copynumber: 2.3 Consensus size: 20
10504030 TAACATTAAA
*
10504040 TAAAAAATTTTAAA-ATTTT
1 TAAAAAATCTTAAATATTTT
10504059 TAAAAAATCTTAAATATTTT
1 TAAAAAATCTTAAATATTTT
10504079 TAAAAA
1 TAAAAA
10504085 TTATAAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (20 bp):
TAAAAAATCTTAAATATTTT
Found at i:10504091 original size:19 final size:18
Alignment explanation
Indices: 10504042--10504127 Score: 70
Period size: 19 Copynumber: 4.7 Consensus size: 18
10504032 ACATTAAATA
*
10504042 AAAAATTTTAAAATTTTT
1 AAAAATTATAAAATTTTT
10504060 AAAAAATCT-TAAATATTTTT
1 -AAAAAT-TATAAA-ATTTTT
* *
10504080 AAAAATTATAAAA-ATAT
1 AAAAATTATAAAATTTTT
* *
10504097 AAAAATAAGAAATATTTTT
1 AAAAATTATAAA-ATTTTT
10504116 -AAAATTATAAAA
1 AAAAATTATAAAA
10504128 ATTAAAAAGT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
17 13 0.24
18 12 0.22
19 22 0.41
20 7 0.13
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (18 bp):
AAAAATTATAAAATTTTT
Found at i:10504093 original size:9 final size:9
Alignment explanation
Indices: 10504079--10504135 Score: 55
Period size: 9 Copynumber: 6.6 Consensus size: 9
10504069 TAAATATTTT
10504079 TAAAAATTA
1 TAAAAATTA
10504088 TAAAAA-TA
1 TAAAAATTA
*
10504096 TAAAAATAA
1 TAAAAATTA
* * *
10504105 GAAATATTT
1 TAAAAATTA
*
10504114 TTAAAATTA
1 TAAAAATTA
10504123 TAAAAATTA
1 TAAAAATTA
10504132 -AAAA
1 TAAAA
10504136 GTAAATGAAA
Statistics
Matches: 37, Mismatches: 10, Indels: 3
0.74 0.20 0.06
Matches are distributed among these distances:
8 12 0.32
9 25 0.68
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (9 bp):
TAAAAATTA
Found at i:10504390 original size:18 final size:18
Alignment explanation
Indices: 10504337--10504395 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
10504327 AAAAATTCTT
10504337 CAAAATTTTTAAAAGT-TT-
1 CAAAA-TTTTAAAA-TATTC
* *
10504355 CAAAATATTAAAAAATTC
1 CAAAATTTTAAAATATTC
10504373 CAAAATTTTAAAATATTC
1 CAAAATTTTAAAATATTC
*
10504391 TAAAA
1 CAAAA
10504396 AATTATAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
17 9 0.26
18 25 0.74
ACGTcount: A:0.54, C:0.08, G:0.02, T:0.36
Consensus pattern (18 bp):
CAAAATTTTAAAATATTC
Done.