Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25818110
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 67000 characters in sequence are not A, C, G, or T
File 54 of 127
Found at i:10690453 original size:15 final size:15
Alignment explanation
Indices: 10690428--10690466 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 15
10690418 TTGAAATCAT
10690428 TTTTCATTTTTA-TTA
1 TTTT-ATTTTTAGTTA
10690443 TTGTTATTTTTAGTTA
1 TT-TTATTTTTAGTTA
10690459 TTTTATTT
1 TTTTATTT
10690467 GGTTTATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 15 0.68
16 7 0.32
ACGTcount: A:0.18, C:0.03, G:0.05, T:0.74
Consensus pattern (15 bp):
TTTTATTTTTAGTTA
Found at i:10691946 original size:62 final size:62
Alignment explanation
Indices: 10691853--10691972 Score: 213
Period size: 62 Copynumber: 1.9 Consensus size: 62
10691843 TTCTCTCTTT
* *
10691853 TTTTTTTTTTAATTGGTTATTAATATATTTAATATTTAATTGTTAATTTAAAAAGGGATCTC
1 TTTTTTTTTTAATTAGTTATTAATATATTTAATAATTAATTGTTAATTTAAAAAGGGATCTC
*
10691915 TTTTTTTTTTAATTAGTTATTAATATATTTAATAATTAATTGTTAATTTTAAAAGGGA
1 TTTTTTTTTTAATTAGTTATTAATATATTTAATAATTAATTGTTAATTTAAAAAGGGA
10691973 AATTAGAAAT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 55 1.00
ACGTcount: A:0.34, C:0.02, G:0.09, T:0.55
Consensus pattern (62 bp):
TTTTTTTTTTAATTAGTTATTAATATATTTAATAATTAATTGTTAATTTAAAAAGGGATCTC
Found at i:10694108 original size:12 final size:12
Alignment explanation
Indices: 10694091--10694129 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 12
10694081 GATTTGAATT
10694091 TTTTTATTAAAA
1 TTTTTATTAAAA
10694103 TTTTTATTAAATTA
1 TTTTTATTAAA--A
10694117 TTTTTAATTAAAA
1 TTTTT-ATTAAAA
10694130 ATTTCACGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 11 0.46
13 1 0.04
14 6 0.25
15 6 0.25
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TTTTTATTAAAA
Found at i:10696168 original size:58 final size:58
Alignment explanation
Indices: 10696078--10696193 Score: 214
Period size: 58 Copynumber: 2.0 Consensus size: 58
10696068 ATGATAGGTG
10696078 CCTGAACAGTGACCTATTATTGACGTTTTCTTTACGGTGAAGGGAAGAAAAAAATTAA
1 CCTGAACAGTGACCTATTATTGACGTTTTCTTTACGGTGAAGGGAAGAAAAAAATTAA
* *
10696136 CCTGAGCAGTGACCTATTATTGATGTTTTCTTTACGGTGAAGGGAAGAAAAAAATTAA
1 CCTGAACAGTGACCTATTATTGACGTTTTCTTTACGGTGAAGGGAAGAAAAAAATTAA
10696194 GATATGCACC
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (58 bp):
CCTGAACAGTGACCTATTATTGACGTTTTCTTTACGGTGAAGGGAAGAAAAAAATTAA
Found at i:10696781 original size:3 final size:3
Alignment explanation
Indices: 10696773--10696817 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
10696763 GTCTTTTTAC
10696773 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
10696818 TACTTTTCTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:10700319 original size:13 final size:14
Alignment explanation
Indices: 10700297--10700334 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
10700287 GTTTTTTTTT
*
10700297 TTTGTT-TTTTTGC
1 TTTGTTATTTTTGA
10700310 TTT-TTATTTTTGA
1 TTTGTTATTTTTGA
10700323 TTTGTTATTTTT
1 TTTGTTATTTTT
10700335 TACTAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 2 0.09
13 12 0.55
14 8 0.36
ACGTcount: A:0.08, C:0.03, G:0.11, T:0.79
Consensus pattern (14 bp):
TTTGTTATTTTTGA
Found at i:10701778 original size:57 final size:58
Alignment explanation
Indices: 10701683--10701824 Score: 173
Period size: 57 Copynumber: 2.5 Consensus size: 58
10701673 TTCAATTCGA
* * * **
10701683 CGGTTCGATCTG-ACGG-TTCGATTCGGTTTGGACGGTTCAGCGGTTCAGTATCGGTT
1 CGGTTCGATCTGAACGGTTTAGATTCGGTTAGGACAGTTCAGCGGTTCAGTATCGACT
* *
10701739 CGGTTCGGTCTGAACGGTTTAGA-TCGGTTAGGGCAGTTCAGCGGTTCAGTATCGACT
1 CGGTTCGATCTGAACGGTTTAGATTCGGTTAGGACAGTTCAGCGGTTCAGTATCGACT
* * *
10701796 CGGTTCGATCTGAGCGGTTCAGTTTCGGT
1 CGGTTCGATCTGAACGGTTTAGATTCGGT
10701825 CCAGTCAGAC
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
56 11 0.15
57 52 0.72
58 9 0.12
ACGTcount: A:0.14, C:0.20, G:0.34, T:0.32
Consensus pattern (58 bp):
CGGTTCGATCTGAACGGTTTAGATTCGGTTAGGACAGTTCAGCGGTTCAGTATCGACT
Found at i:10702419 original size:16 final size:17
Alignment explanation
Indices: 10702395--10702430 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
10702385 TTTTTTTGTG
*
10702395 TTTCTACAGAAT-TTTT
1 TTTCGACAGAATCTTTT
10702411 TTTCGACAGAATCTTTT
1 TTTCGACAGAATCTTTT
10702428 TTT
1 TTT
10702431 TTTGTCATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.22, C:0.14, G:0.08, T:0.56
Consensus pattern (17 bp):
TTTCGACAGAATCTTTT
Found at i:10702773 original size:3 final size:3
Alignment explanation
Indices: 10702767--10702792 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
10702757 AAAAAAATTA
10702767 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
10702793 AAAAAAATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:10706622 original size:25 final size:26
Alignment explanation
Indices: 10706594--10706651 Score: 75
Period size: 25 Copynumber: 2.2 Consensus size: 26
10706584 CACCTAAAAC
10706594 TTTTATAAAAATTT-ACCATTTGA-AA
1 TTTTAT-AAAATTTCACCATTTGATAA
*
10706619 TTTTATAAAATTTCATCATTTGATAA
1 TTTTATAAAATTTCACCATTTGATAA
10706645 TTATTAT
1 TT-TTAT
10706652 TTATTCTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 7 0.24
25 14 0.48
26 4 0.14
27 4 0.14
ACGTcount: A:0.40, C:0.07, G:0.03, T:0.50
Consensus pattern (26 bp):
TTTTATAAAATTTCACCATTTGATAA
Found at i:10706648 original size:24 final size:24
Alignment explanation
Indices: 10706595--10706646 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 24
10706585 ACCTAAAACT
10706595 TTTATAAAAATTTACCATTTGAAA
1 TTTATAAAAATTTACCATTTGAAA
*
10706619 TTT-TATAAAATTTCATCATTTGATAA
1 TTTATA-AAAATTT-ACCATTTGA-AA
10706645 TT
1 TT
10706647 ATTATTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 2 0.08
24 10 0.42
25 8 0.33
26 4 0.17
ACGTcount: A:0.40, C:0.08, G:0.04, T:0.48
Consensus pattern (24 bp):
TTTATAAAAATTTACCATTTGAAA
Found at i:10708678 original size:52 final size:52
Alignment explanation
Indices: 10708612--10708740 Score: 199
Period size: 52 Copynumber: 2.5 Consensus size: 52
10708602 ACTTACATAC
*
10708612 TAAGAAT-TTCTTTCCTTTTAGAATTCTTATCTTACAAGTCAAACTTGCCTAT
1 TAAGAATCTT-TTTCCTCTTAGAATTCTTATCTTACAAGTCAAACTTGCCTAT
* *
10708664 TAAGAATCTTTTTCCTCTTAGAATTCTTCTCTTGCAAGTCAAACTTGCCTAT
1 TAAGAATCTTTTTCCTCTTAGAATTCTTATCTTACAAGTCAAACTTGCCTAT
10708716 TAAGAATCCTTTTT-CTCTTAGAATT
1 TAAGAAT-CTTTTTCCTCTTAGAATT
10708741 TTTTTTTGCA
Statistics
Matches: 72, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
52 64 0.89
53 8 0.11
ACGTcount: A:0.27, C:0.20, G:0.09, T:0.44
Consensus pattern (52 bp):
TAAGAATCTTTTTCCTCTTAGAATTCTTATCTTACAAGTCAAACTTGCCTAT
Found at i:10709705 original size:52 final size:52
Alignment explanation
Indices: 10709648--10709804 Score: 188
Period size: 52 Copynumber: 3.0 Consensus size: 52
10709638 TATAACCATA
* * * * * *
10709648 CAAACTTGCATACTAACAATCCCTTTTCTTTTAGAATTCTTCTCTTACAAGT
1 CAAACTTGCCTATTAAAAATCACTTTTCTCTTAGAATTCTTCTCTTGCAAGT
* * *
10709700 CAAACTTGCCTATTAAAAATCTCTTTTCTCTTAAAATTCTTCTCCTGCAAGT
1 CAAACTTGCCTATTAAAAATCACTTTTCTCTTAGAATTCTTCTCTTGCAAGT
* * * * *
10709752 CAAATTTACCTATTAAGAATCATTTTTCTCTTAGAATTCTTCTTTTGCAAGT
1 CAAACTTGCCTATTAAAAATCACTTTTCTCTTAGAATTCTTCTCTTGCAAGT
10709804 C
1 C
10709805 TTCTTATCCA
Statistics
Matches: 89, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
52 89 1.00
ACGTcount: A:0.29, C:0.23, G:0.06, T:0.42
Consensus pattern (52 bp):
CAAACTTGCCTATTAAAAATCACTTTTCTCTTAGAATTCTTCTCTTGCAAGT
Found at i:10709951 original size:3 final size:3
Alignment explanation
Indices: 10709943--10709977 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
10709933 CAACTTAATA
10709943 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
10709978 AGAGCTTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:10710432 original size:3 final size:3
Alignment explanation
Indices: 10710424--10710453 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
10710414 AAAATTAAAC
10710424 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
10710454 TGGGCCAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:10710824 original size:23 final size:21
Alignment explanation
Indices: 10710796--10710859 Score: 58
Period size: 20 Copynumber: 3.0 Consensus size: 21
10710786 TTTAAAATGG
10710796 TTGTTAAATTATTAAATTTTT
1 TTGTTAAATTATTAAATTTTT
* * * **
10710817 TATAGTTATATTTTTAAA-ATGG
1 T-T-GTTAAATTATTAAATTTTT
10710839 TTGTTAAATTATTAAATTTTT
1 TTGTTAAATTATTAAATTTTT
10710860 AGTTTAGTCA
Statistics
Matches: 30, Mismatches: 10, Indels: 6
0.65 0.22 0.13
Matches are distributed among these distances:
20 12 0.40
21 3 0.10
22 3 0.10
23 12 0.40
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (21 bp):
TTGTTAAATTATTAAATTTTT
Found at i:10710830 original size:43 final size:43
Alignment explanation
Indices: 10710777--10710859 Score: 157
Period size: 43 Copynumber: 1.9 Consensus size: 43
10710767 AATAAGATTG
*
10710777 AGTTGTATTTTTAAAATGGTTGTTAAATTATTAAATTTTTTAT
1 AGTTATATTTTTAAAATGGTTGTTAAATTATTAAATTTTTTAT
10710820 AGTTATATTTTTAAAATGGTTGTTAAATTATTAAATTTTT
1 AGTTATATTTTTAAAATGGTTGTTAAATTATTAAATTTTT
10710860 AGTTTAGTCA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.55
Consensus pattern (43 bp):
AGTTATATTTTTAAAATGGTTGTTAAATTATTAAATTTTTTAT
Found at i:10711469 original size:2 final size:2
Alignment explanation
Indices: 10711462--10711486 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10711452 ATTAAGAGAA
10711462 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
10711487 GAACAACGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10711522 original size:83 final size:83
Alignment explanation
Indices: 10711403--10711569 Score: 334
Period size: 83 Copynumber: 2.0 Consensus size: 83
10711393 TAATACAGAG
10711403 AGAACAACGACGATAATAATGTCTATTTGTTATCACGTGAAACGGTTAGATTAAGAGAAATATAT
1 AGAACAACGACGATAATAATGTCTATTTGTTATCACGTGAAACGGTTAGATTAAGAGAAATATAT
10711468 ATATATATATATATATAT
66 ATATATATATATATATAT
10711486 AGAACAACGACGATAATAATGTCTATTTGTTATCACGTGAAACGGTTAGATTAAGAGAAATATAT
1 AGAACAACGACGATAATAATGTCTATTTGTTATCACGTGAAACGGTTAGATTAAGAGAAATATAT
10711551 ATATATATATATATATAT
66 ATATATATATATATATAT
10711569 A
1 A
10711570 TATATCCACA
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
83 84 1.00
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.34
Consensus pattern (83 bp):
AGAACAACGACGATAATAATGTCTATTTGTTATCACGTGAAACGGTTAGATTAAGAGAAATATAT
ATATATATATATATATAT
Found at i:10711552 original size:2 final size:2
Alignment explanation
Indices: 10711545--10711574 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
10711535 ATTAAGAGAA
10711545 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10711575 CCACACGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10711847 original size:13 final size:13
Alignment explanation
Indices: 10711831--10711867 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
10711821 TGAATAAATA
10711831 AAAATTAAAATTG
1 AAAATTAAAATTG
*
10711844 AAAATCAAAATTG
1 AAAATTAAAATTG
10711857 ATAAATTAAAA
1 A-AAATTAAAA
10711868 AATTTTATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 13 0.62
14 8 0.38
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.27
Consensus pattern (13 bp):
AAAATTAAAATTG
Found at i:10712300 original size:6 final size:6
Alignment explanation
Indices: 10712289--10712315 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
10712279 AACCCTCAGT
10712289 CTTCGC CTTCGC CTTCGC CTTCGC CTT
1 CTTCGC CTTCGC CTTCGC CTTCGC CTT
10712316 TGCAGAGTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.48, G:0.15, T:0.37
Consensus pattern (6 bp):
CTTCGC
Found at i:10716484 original size:4 final size:4
Alignment explanation
Indices: 10716477--10716501 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
10716467 TATATATATA
10716477 TATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG T
10716502 CCAATTCTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:10719884 original size:15 final size:15
Alignment explanation
Indices: 10719864--10719915 Score: 81
Period size: 15 Copynumber: 3.6 Consensus size: 15
10719854 TGTCCAACAT
10719864 TTTTTTAAATATATA
1 TTTTTTAAATATATA
*
10719879 TTTTTTAAA-ACAT-
1 TTTTTTAAATATATA
10719892 TTTTTTAAATATATA
1 TTTTTTAAATATATA
10719907 TTTTTTAAA
1 TTTTTTAAA
10719916 GTGTTCAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
13 9 0.27
14 6 0.18
15 18 0.55
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (15 bp):
TTTTTTAAATATATA
Found at i:10719890 original size:28 final size:28
Alignment explanation
Indices: 10719859--10719915 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
10719849 AAATGTGTCC
10719859 AACATTTTTTTAAATATATATTTTTTAA
1 AACATTTTTTTAAATATATATTTTTTAA
10719887 AACATTTTTTTAAATATATATTTTTTAA
1 AACATTTTTTTAAATATATATTTTTTAA
10719915 A
1 A
10719916 GTGTTCAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (28 bp):
AACATTTTTTTAAATATATATTTTTTAA
Found at i:10727608 original size:26 final size:27
Alignment explanation
Indices: 10727579--10727636 Score: 73
Period size: 26 Copynumber: 2.1 Consensus size: 27
10727569 CACAAGTAAT
*
10727579 ATCCAAATATCAAGATCATT-CATGCA
1 ATCCAAATATCAAGAGCATTCCATGCA
* *
10727605 ATCCCAATATTAAGAGCATTCGCATGCA
1 ATCCAAATATCAAGAGCATTC-CATGCA
10727633 ATCC
1 ATCC
10727637 TACAAATCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 17 0.63
28 10 0.37
ACGTcount: A:0.38, C:0.26, G:0.10, T:0.26
Consensus pattern (27 bp):
ATCCAAATATCAAGAGCATTCCATGCA
Found at i:10737331 original size:14 final size:14
Alignment explanation
Indices: 10737314--10737376 Score: 54
Period size: 14 Copynumber: 4.2 Consensus size: 14
10737304 CTTTTTAATC
10737314 TTTTTTATTTATAA
1 TTTTTTATTTATAA
*
10737328 TTTTTTATTAATAAA
1 TTTTTTATTTAT-AA
* *
10737343 TATTTTTATTTTTTTA
1 T-TTTTTA-TTTATAA
*
10737359 CTTTTTATTTGATAA
1 TTTTTTATTT-ATAA
10737374 TTT
1 TTT
10737377 CTTAAAAATA
Statistics
Matches: 37, Mismatches: 8, Indels: 7
0.71 0.15 0.13
Matches are distributed among these distances:
14 14 0.38
15 13 0.35
16 7 0.19
17 3 0.08
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.70
Consensus pattern (14 bp):
TTTTTTATTTATAA
Found at i:10737561 original size:21 final size:20
Alignment explanation
Indices: 10737519--10737583 Score: 64
Period size: 21 Copynumber: 3.4 Consensus size: 20
10737509 GCCAATTCAA
*
10737519 TTTTCTT-TCTTTTTTATTT
1 TTTTCTTATCTTATTTATTT
*
10737538 TTTTCTTATCATTATTTCTTT
1 TTTTCTTATC-TTATTTATTT
* *
10737559 TTTCCTTAT-TT-TTTAGTT
1 TTTTCTTATCTTATTTATTT
10737577 TTTTCTT
1 TTTTCTT
10737584 TTTTATATTT
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
18 11 0.29
19 9 0.24
20 2 0.05
21 16 0.42
ACGTcount: A:0.09, C:0.12, G:0.02, T:0.77
Consensus pattern (20 bp):
TTTTCTTATCTTATTTATTT
Found at i:10739008 original size:30 final size:28
Alignment explanation
Indices: 10738953--10739010 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
10738943 ATGTATATAA
* **
10738953 AGATATATATTTTATTATTTATAATTTT
1 AGATATATATTATATTATAAATAATTTT
10738981 AGATATATATTATATTAATAAAGTAATTTT
1 AGATATATATTATATT-ATAAA-TAATTTT
10739011 TTATCTTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 15 0.60
29 3 0.12
30 7 0.28
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.53
Consensus pattern (28 bp):
AGATATATATTATATTATAAATAATTTT
Found at i:10745720 original size:8 final size:8
Alignment explanation
Indices: 10745707--10745735 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
10745697 GCATATCCTT
10745707 TGCATTCA
1 TGCATTCA
10745715 TGCATTCA
1 TGCATTCA
10745723 TGCATTCA
1 TGCATTCA
10745731 TGCAT
1 TGCAT
10745736 CATACATGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (8 bp):
TGCATTCA
Found at i:10753079 original size:22 final size:21
Alignment explanation
Indices: 10753054--10753114 Score: 52
Period size: 22 Copynumber: 2.8 Consensus size: 21
10753044 TTTGAGTTTT
10753054 TTTTTATTTCATTTTTTAAAAA
1 TTTTTATTT-ATTTTTTAAAAA
* *
10753076 TTTTCTCTTT-TTTTAATAAAAA
1 TTTT-TATTTATTTT-TTAAAAA
*
10753098 TTATTATTTTATTTTTT
1 TTTTTA-TTTATTTTTT
10753115 TGAAAAATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 8
0.70 0.12 0.19
Matches are distributed among these distances:
21 5 0.17
22 17 0.57
23 8 0.27
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTTATTTATTTTTTAAAAA
Found at i:10753494 original size:19 final size:19
Alignment explanation
Indices: 10753456--10753494 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
10753446 CCCCTAGGAC
*
10753456 TTTGTCTGTGAATCCTTTT
1 TTTGTCTGTGAATCCCTTT
10753475 TTTG-CTGTGAATTCCCTTT
1 TTTGTCTGTGAA-TCCCTTT
10753494 T
1 T
10753495 GCTAGGATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.10, C:0.18, G:0.15, T:0.56
Consensus pattern (19 bp):
TTTGTCTGTGAATCCCTTT
Found at i:10756751 original size:2 final size:2
Alignment explanation
Indices: 10756744--10756778 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
10756734 TGCTAAATTA
10756744 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
10756779 TGAAAAAGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:10757705 original size:24 final size:26
Alignment explanation
Indices: 10757673--10757725 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
10757663 ATTAAGAATC
*
10757673 AAAATTAAA-AATAATAAAATT-TTT
1 AAAAATAAATAATAATAAAATTATTT
* *
10757697 AAAAATAAATATTAATAAATTTATTT
1 AAAAATAAATAATAATAAAATTATTT
10757723 AAA
1 AAA
10757726 TTTAATTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 8 0.33
25 10 0.42
26 6 0.25
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (26 bp):
AAAAATAAATAATAATAAAATTATTT
Found at i:10757747 original size:19 final size:19
Alignment explanation
Indices: 10757702--10757743 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
10757692 TTTTTAAAAA
10757702 TAAATATTAATAAATTTATT
1 TAAAT-TTAATAAATTTATT
*
10757722 TAAATTTAATTAA-TTATT
1 TAAATTTAATAAATTTATT
10757740 TAAA
1 TAAA
10757744 ATTTTTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.43
19 7 0.33
20 5 0.24
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TAAATTTAATAAATTTATT
Found at i:10757870 original size:3 final size:3
Alignment explanation
Indices: 10757862--10757890 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
10757852 TTAACTCTTA
10757862 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
10757891 AAGGTAAAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:10758501 original size:13 final size:13
Alignment explanation
Indices: 10758483--10758510 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
10758473 TTCTTACTTT
10758483 TTATATTTTAAAA
1 TTATATTTTAAAA
10758496 TTATATTTTAAAA
1 TTATATTTTAAAA
10758509 TT
1 TT
10758511 TTTTTATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
TTATATTTTAAAA
Found at i:10758841 original size:21 final size:22
Alignment explanation
Indices: 10758817--10758868 Score: 81
Period size: 21 Copynumber: 2.5 Consensus size: 22
10758807 CTCGAAATTA
10758817 ATAAAATATTA-TTTTAAAAAT
1 ATAAAATATTATTTTTAAAAAT
*
10758838 ATAAAATATTATTTTTTAAAAT
1 ATAAAATATTATTTTTAAAAAT
10758860 AT-AAATATT
1 ATAAAATATT
10758869 TAAATATATA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 18 0.62
22 11 0.38
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
ATAAAATATTATTTTTAAAAAT
Found at i:10758874 original size:8 final size:8
Alignment explanation
Indices: 10758854--10758894 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
10758844 TATTATTTTT
10758854 TAAA-ATA
1 TAAATATA
*
10758861 TAAATATT
1 TAAATATA
10758869 TAAATATA
1 TAAATATA
*
10758877 TAATTATA
1 TAAATATA
10758885 TAAATATA
1 TAAATATA
10758893 TA
1 TA
10758895 TAATTAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
7 4 0.14
8 25 0.86
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (8 bp):
TAAATATA
Found at i:10758885 original size:18 final size:18
Alignment explanation
Indices: 10758852--10758900 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
10758842 AATATTATTT
10758852 TTTAAA-ATATAA--ATA
1 TTTAAATATATAATTATA
10758867 TTTAAATATATAATTATA
1 TTTAAATATATAATTATA
*
10758885 -TAAATATATATAATTA
1 TTTAA-ATATATAATTA
10758901 AAAAATTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
15 6 0.21
16 6 0.21
17 3 0.10
18 14 0.48
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
TTTAAATATATAATTATA
Found at i:10760195 original size:17 final size:18
Alignment explanation
Indices: 10760175--10760212 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
10760165 CGAAATTAAT
10760175 AAAATATTTTTTAATATAA
1 AAAATA-TTTTTAATATAA
*
10760194 AAAATATTTTTAATGTAA
1 AAAATATTTTTAATATAA
10760212 A
1 A
10760213 TATAGAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (18 bp):
AAAATATTTTTAATATAA
Found at i:10760822 original size:15 final size:15
Alignment explanation
Indices: 10760802--10760832 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
10760792 TTTTTTTAAT
*
10760802 TTTTTGAGATGCTCA
1 TTTTTGAGATCCTCA
10760817 TTTTTGAGATCCTCA
1 TTTTTGAGATCCTCA
10760832 T
1 T
10760833 GGATATATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.16, G:0.16, T:0.48
Consensus pattern (15 bp):
TTTTTGAGATCCTCA
Found at i:10760842 original size:2 final size:2
Alignment explanation
Indices: 10760835--10760868 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
10760825 ATCCTCATGG
10760835 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10760869 GAATCTGTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10762001 original size:21 final size:21
Alignment explanation
Indices: 10761962--10762001 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
10761952 CCGTGACGAT
* *
10761962 AAAGACGATGAAGATGATGTA
1 AAAGACCATGAAGAAGATGTA
*
10761983 AAAGACCATGACGAAGATG
1 AAAGACCATGAAGAAGATG
10762002 GAGAAGCATG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.10, G:0.28, T:0.15
Consensus pattern (21 bp):
AAAGACCATGAAGAAGATGTA
Found at i:10762541 original size:2 final size:2
Alignment explanation
Indices: 10762534--10762563 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
10762524 AGGCTCATGC
10762534 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10762564 TGATATCTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10765826 original size:13 final size:14
Alignment explanation
Indices: 10765802--10765830 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
10765792 AATTTATATA
10765802 TAATTATAATATTT
1 TAATTATAATATTT
10765816 TAATTAT-ATATTT
1 TAATTATAATATTT
10765829 TA
1 TA
10765831 TTTGAGCTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TAATTATAATATTT
Found at i:10775176 original size:15 final size:15
Alignment explanation
Indices: 10775153--10775192 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
10775143 CAAGCTCTCC
*
10775153 TTTTCTTTTT-CCTT
1 TTTTTTTTTTGCCTT
*
10775167 TTTTTTTTTTGGCTT
1 TTTTTTTTTTGCCTT
10775182 TTTTTTTTTTG
1 TTTTTTTTTTG
10775193 TTTTTGTGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 9 0.39
15 14 0.61
ACGTcount: A:0.00, C:0.10, G:0.07, T:0.82
Consensus pattern (15 bp):
TTTTTTTTTTGCCTT
Found at i:10775183 original size:21 final size:21
Alignment explanation
Indices: 10775159--10775198 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
10775149 CTCCTTTTCT
10775159 TTTTCCTTTTTTT-TTTTTGGC
1 TTTT-CTTTTTTTGTTTTTGGC
*
10775180 TTTTTTTTTTTTGTTTTTG
1 TTTTCTTTTTTTGTTTTTG
10775199 TGCCGCTCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.00, C:0.07, G:0.10, T:0.82
Consensus pattern (21 bp):
TTTTCTTTTTTTGTTTTTGGC
Found at i:10777446 original size:18 final size:18
Alignment explanation
Indices: 10777398--10777448 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
10777388 CAAAATAAAA
*
10777398 AGATAAAT-ATATTAA-T
1 AGATAAATAATAATAATT
*
10777414 AGATAACA-AAAAATAATT
1 AGATAA-ATAATAATAATT
10777432 AGATAAATAATAATAAT
1 AGATAAATAATAATAAT
10777449 AAATAAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
16 6 0.21
17 7 0.25
18 15 0.54
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (18 bp):
AGATAAATAATAATAATT
Found at i:10777466 original size:14 final size:14
Alignment explanation
Indices: 10777431--10777471 Score: 66
Period size: 14 Copynumber: 3.0 Consensus size: 14
10777421 AAAAAATAAT
*
10777431 TAGATAAATAATAA
1 TAGATAAATAAAAA
10777445 TA-ATAAATAAAAA
1 TAGATAAATAAAAA
10777458 TAGATAAATAAAAA
1 TAGATAAATAAAAA
10777472 ATATTAATAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 12 0.48
14 13 0.52
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (14 bp):
TAGATAAATAAAAA
Found at i:10777467 original size:21 final size:21
Alignment explanation
Indices: 10777425--10777536 Score: 64
Period size: 21 Copynumber: 5.6 Consensus size: 21
10777415 GATAACAAAA
* *
10777425 AATAATTAGATAAATA-ATAAT
1 AATAAATA-ATAAATAGAAAAT
10777446 AATAAATAA-AAATAGATAAAT
1 AATAAATAATAAATAGA-AAAT
* * *
10777467 AAAAAAT-ATTAATAGATAA-
1 AATAAATAATAAATAGAAAAT
10777486 AA-AAATAA-AAAT--AAAAT
1 AATAAATAATAAATAGAAAAT
*
10777503 -ATATATTAATAAATAGACAAAT
1 AATA-AATAATAAATAGA-AAAT
10777525 AATAAA-AATAAA
1 AATAAATAATAAA
10777537 AATAAAAGCC
Statistics
Matches: 70, Mismatches: 9, Indels: 24
0.68 0.09 0.23
Matches are distributed among these distances:
16 4 0.06
17 1 0.01
18 11 0.16
19 12 0.17
20 5 0.07
21 29 0.41
22 5 0.07
23 3 0.04
ACGTcount: A:0.70, C:0.01, G:0.04, T:0.26
Consensus pattern (21 bp):
AATAAATAATAAATAGAAAAT
Found at i:10777525 original size:66 final size:65
Alignment explanation
Indices: 10777389--10777540 Score: 170
Period size: 66 Copynumber: 2.3 Consensus size: 65
10777379 AAAATTAATC
* * *
10777389 AAAATAA-AAAGATAAATATATTAATAGATAACAAAAAATAATTAGATAAATAATAATAATAAAT
1 AAAATAATAAAAATAAAAATATTAATAGATAACAAAAAATAA-TAAATAAATAATAATAATAAAT
10777453 A
65 A
* *
10777454 AAAATAGATAAATA-AAAAATATTAATAGAT-A-AAAAAATAA-AAATAAAATATATATTAATAA
1 AAAATA-ATAAAAATAAAAATATTAATAGATAACAAAAAATAATAAAT-AAATA-ATAATAATAA
10777515 ATA
63 ATA
10777518 GACAAATAATAAAAATAAAAATA
1 -A-AAATAATAAAAATAAAAATA
10777541 AAAGCCAATT
Statistics
Matches: 75, Mismatches: 5, Indels: 13
0.81 0.05 0.14
Matches are distributed among these distances:
62 3 0.04
63 5 0.07
64 21 0.28
65 14 0.19
66 28 0.37
67 4 0.05
ACGTcount: A:0.70, C:0.01, G:0.04, T:0.25
Consensus pattern (65 bp):
AAAATAATAAAAATAAAAATATTAATAGATAACAAAAAATAATAAATAAATAATAATAATAAATA
Found at i:10777540 original size:37 final size:33
Alignment explanation
Indices: 10777389--10777537 Score: 119
Period size: 31 Copynumber: 4.5 Consensus size: 33
10777379 AAAATTAATC
* * *
10777389 AAAATAAAAAGATAA-ATATATTAATAGATAACAA
1 AAAATAAAAATAAAATATATATTAATAAAT-A-AA
* *
10777423 AAAATAATTAGAT-AAATA-ATAATAATAAATAAA
1 AAAATAA--AAATAAAATATATATTAATAAATAAA
* * * *
10777456 AATAGATAAATAAAA-A-ATATTAATAGATAAA
1 AAAATAAAAATAAAATATATATTAATAAATAAA
10777487 AAAATAAAAATAAAATATATATTAATAAATAGACA
1 AAAATAAAAATAAAATATATATTAATAAATA-A-A
10777522 AATAATAAAAATAAAA
1 AA-AATAAAAATAAAA
10777538 ATAAAAGCCA
Statistics
Matches: 91, Mismatches: 15, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
31 29 0.32
32 4 0.04
33 18 0.20
34 9 0.10
35 15 0.16
36 16 0.18
ACGTcount: A:0.70, C:0.01, G:0.04, T:0.25
Consensus pattern (33 bp):
AAAATAAAAATAAAATATATATTAATAAATAAA
Found at i:10777543 original size:5 final size:6
Alignment explanation
Indices: 10777436--10777543 Score: 56
Period size: 6 Copynumber: 16.3 Consensus size: 6
10777426 ATAATTAGAT
* * * *
10777436 AAATAA TAATAA TAAATAA AAATAGA TAAATAAA AAATAT TAATAGA TAA-AA
1 AAATAA AAATAA -AAATAA AAATA-A -AAAT-AA AAATAA AAATA-A AAATAA
* *
10777488 AAATAA AAATAA AATATATA TTAATAA ATAGACAA ATAATAA AAATAA
1 AAATAA AAATAA AA-ATA-A -AAATAA A-A-ATAA A-AATAA AAATAA
10777536 AAATAA AA
1 AAATAA AA
10777544 GCCAATTGGG
Statistics
Matches: 81, Mismatches: 10, Indels: 22
0.72 0.09 0.19
Matches are distributed among these distances:
5 3 0.04
6 39 0.48
7 22 0.27
8 15 0.19
9 2 0.02
ACGTcount: A:0.72, C:0.01, G:0.03, T:0.24
Consensus pattern (6 bp):
AAATAA
Found at i:10777956 original size:80 final size:80
Alignment explanation
Indices: 10777861--10778046 Score: 202
Period size: 80 Copynumber: 2.3 Consensus size: 80
10777851 ATTAGAAGCT
*
10777861 CAACGACTTTGAAAAATAAATAAATTCTCTAAGCAGAA-GCACCATGAC-TTCAAAAATAAA-TG
1 CAACGACTTTGAAAAATAAATAAATTCTCTAAACA-AAGGCACCATGACTTTCAAAAATAAATTG
10777923 CTCATCTAAACAGAGG
65 CTCATCTAAACAGAGG
*** * * * *
10777939 CACAACGACTTTGAAAAATAAATTGCTCCTCTAAATAAAGGCACCATGACTTTGAAAAGTAAATT
1 --CAACGACTTTGAAAAATAAATAAATTCTCTAAACAAAGGCACCATGACTTTCAAAAATAAATT
* *
10778004 TCTCCTCTAAACAGAGG
64 GCTCATCTAAACAGAGG
10778021 CAACGAAACTTTG-AAAA-AAATAAATT
1 CAACG--ACTTTGAAAAATAAATAAATT
10778047 GCTCCTTAAC
Statistics
Matches: 87, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
79 2 0.02
80 49 0.56
81 14 0.16
82 22 0.25
ACGTcount: A:0.45, C:0.19, G:0.12, T:0.24
Consensus pattern (80 bp):
CAACGACTTTGAAAAATAAATAAATTCTCTAAACAAAGGCACCATGACTTTCAAAAATAAATTGC
TCATCTAAACAGAGG
Found at i:10778022 original size:41 final size:41
Alignment explanation
Indices: 10777803--10778052 Score: 186
Period size: 41 Copynumber: 6.1 Consensus size: 41
10777793 ATAAACAAAA
* ** * *
10777803 CTCCTCTAAACAGAGGCTCCACAACCTTG-AAAATAAATGG
1 CTCCTCTAAACAGAGGCACCATGACTTTGAAAAATAAATTG
** * * * * **
10777843 CT-CTCATAATTAGAAGCTCAACGACTTTGAAAAATAAATAA
1 CTCCTC-TAAACAGAGGCACCATGACTTTGAAAAATAAATTG
* * * * *
10777884 ATTCTCTAAGCAGAAGCACCATGAC-TTCAAAAATAAA-TG
1 CTCCTCTAAACAGAGGCACCATGACTTTGAAAAATAAATTG
* * *
10777923 CTCATCTAAACAGAGGCACAACGACTTTGAAAAATAAATTG
1 CTCCTCTAAACAGAGGCACCATGACTTTGAAAAATAAATTG
* * * *
10777964 CTCCTCTAAATAAAGGCACCATGACTTTGAAAAGTAAATTT
1 CTCCTCTAAACAGAGGCACCATGACTTTGAAAAATAAATTG
* *
10778005 CTCCTCTAAACAGAGGCAACGA-AACTTTGAAAAAAATAAATTG
1 CTCCTCTAAACAGAGGC-ACCATGACTTTG--AAAAATAAATTG
10778048 CTCCT
1 CTCCT
10778053 TAACAATCAT
Statistics
Matches: 164, Mismatches: 38, Indels: 13
0.76 0.18 0.06
Matches are distributed among these distances:
39 21 0.13
40 41 0.25
41 81 0.49
42 6 0.04
43 15 0.09
ACGTcount: A:0.42, C:0.21, G:0.13, T:0.24
Consensus pattern (41 bp):
CTCCTCTAAACAGAGGCACCATGACTTTGAAAAATAAATTG
Found at i:10778412 original size:43 final size:43
Alignment explanation
Indices: 10778286--10778423 Score: 138
Period size: 43 Copynumber: 3.1 Consensus size: 43
10778276 AAATATCCTT
*
10778286 ATTTGAATTTTGGAGATTCACATCCAAAAGTT-AAAGGCTTTTC
1 ATTTGAATTTTGGAGATTCACATCCAAAAATTCAAA-GCTTTTC
*** *
10778329 AAAGGTTCCCATTTTGGA-ATTCATATCCAAAAA-TCTAAAGCTTTTC
1 --A--TTTGAATTTTGGAGATTCACATCCAAAAATTC-AAAGCTTTTC
* *
10778375 ATTTGAATTTTGGAGATTCACATCTAAAAATTCAAAGCTTCTC
1 ATTTGAATTTTGGAGATTCACATCCAAAAATTCAAAGCTTTTC
10778418 ATTTGA
1 ATTTGA
10778424 GTTCAAAGGC
Statistics
Matches: 76, Mismatches: 11, Indels: 14
0.75 0.11 0.14
Matches are distributed among these distances:
42 10 0.13
43 28 0.37
44 3 0.04
45 2 0.03
46 20 0.26
47 13 0.17
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (43 bp):
ATTTGAATTTTGGAGATTCACATCCAAAAATTCAAAGCTTTTC
Found at i:10779854 original size:18 final size:19
Alignment explanation
Indices: 10779833--10779873 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
10779823 TTCATCTTTT
*
10779833 TTTTCTCTTTTT-TTTTCA
1 TTTTCCCTTTTTATTTTCA
10779851 TTTTCCCTTTTTATTTTCA
1 TTTTCCCTTTTTATTTTCA
10779870 TTTT
1 TTTT
10779874 TTTTCACCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTCCCTTTTTATTTTCA
Found at i:10779860 original size:29 final size:31
Alignment explanation
Indices: 10779820--10779902 Score: 100
Period size: 29 Copynumber: 2.7 Consensus size: 31
10779810 CCTTTTTCCT
* *
10779820 CCTTTCATCTTTTTTTTCTCTTTTTTTTTCA
1 CCTTTCACCTTTTTTTTCTCATTTTTTTTCA
*
10779851 -TTTTC-CCTTTTTATTT-TCATTTTTTTTCA
1 CCTTTCACCTTTTT-TTTCTCATTTTTTTTCA
10779880 CCTTTCACCATTTTTTTTCTCAT
1 CCTTTCACC-TTTTTTTTCTCAT
10779903 CTTTCATCCA
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
29 18 0.42
30 11 0.26
31 5 0.12
32 9 0.21
ACGTcount: A:0.10, C:0.23, G:0.00, T:0.67
Consensus pattern (31 bp):
CCTTTCACCTTTTTTTTCTCATTTTTTTTCA
Found at i:10779896 original size:23 final size:23
Alignment explanation
Indices: 10779870--10779914 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
10779860 TTTATTTTCA
10779870 TTTTTTT-TCACCTTTCA-CCAT
1 TTTTTTTCTCACCTTTCATCCAT
*
10779891 TTTTTTTCTCATCTTTCATCCAT
1 TTTTTTTCTCACCTTTCATCCAT
10779914 T
1 T
10779915 GTTGATATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 7 0.33
22 9 0.43
23 5 0.24
ACGTcount: A:0.13, C:0.27, G:0.00, T:0.60
Consensus pattern (23 bp):
TTTTTTTCTCACCTTTCATCCAT
Found at i:10788286 original size:17 final size:17
Alignment explanation
Indices: 10788266--10788307 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
10788256 CAAATTGCAT
* *
10788266 AATATTAAATTTATTCA
1 AATATAAAAATTATTCA
10788283 AATATAAAAATTATTCA
1 AATATAAAAATTATTCA
10788300 AATTATAA
1 AA-TATAA
10788308 TTGGCAAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 17 0.77
18 5 0.23
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (17 bp):
AATATAAAAATTATTCA
Found at i:10788510 original size:15 final size:15
Alignment explanation
Indices: 10788492--10788521 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
10788482 ATTTACTAAC
*
10788492 AATTTACATATATAT
1 AATTTAAATATATAT
10788507 AATTTAAATATATAT
1 AATTTAAATATATAT
10788522 TTTTGTCTTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (15 bp):
AATTTAAATATATAT
Found at i:10788591 original size:129 final size:130
Alignment explanation
Indices: 10788441--10788684 Score: 316
Period size: 129 Copynumber: 1.9 Consensus size: 130
10788431 AACTAATCAA
* * *
10788441 ATAAATAAAAATATTTTAAAATTATTAATTATCCAAAATTAA-TTTACTAACAATTTACATATAT
1 ATAAATAAAAATATTTAAAAATGATTAATTATCCAAAATTAATTTTA-TAACAATTT--AGATAT
*
10788505 ATAATTT-AA-ATATATAT-TTTTGTCTTCTAAAATTAATTTTCTAATAATTTTATGGTATTTAT
63 ATAATTTAAATATATATATCTTTTATCTTCTAAAATTAATTTTCTAATAATTTTATGGTATTTAT
10788567 TAG
128 TAG
* * * * * *
10788570 ATAAATAGAAGTATTTAAAAATGATTAGTTATCTAACATTAATTTTATAATAATTTAGATATATA
1 ATAAATAAAAATATTTAAAAATGATTAATTATCCAAAATTAATTTTATAACAATTTAGATATATA
* * *
10788635 ATTTAAATATATATATCTTTTATTTTTTAAAATTAATTTTTTAATAATTT
66 ATTTAAATATATATATCTTTTATCTTCTAAAATTAATTTTCTAATAATTT
10788685 AGATATATAT
Statistics
Matches: 98, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
127 12 0.12
128 2 0.02
129 51 0.52
130 33 0.34
ACGTcount: A:0.43, C:0.05, G:0.04, T:0.48
Consensus pattern (130 bp):
ATAAATAAAAATATTTAAAAATGATTAATTATCCAAAATTAATTTTATAACAATTTAGATATATA
ATTTAAATATATATATCTTTTATCTTCTAAAATTAATTTTCTAATAATTTTATGGTATTTATTAG
Found at i:10792272 original size:10 final size:10
Alignment explanation
Indices: 10792259--10792289 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
10792249 TCATGATTTT
*
10792259 TTATAAGAAA
1 TTATAAAAAA
10792269 TTATAAAAAA
1 TTATAAAAAA
10792279 TTATAAAAAA
1 TTATAAAAAA
10792289 T
1 T
10792290 AGAAAAACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (10 bp):
TTATAAAAAA
Found at i:10795105 original size:18 final size:19
Alignment explanation
Indices: 10795060--10795110 Score: 52
Period size: 21 Copynumber: 2.7 Consensus size: 19
10795050 TATATTAAAA
*
10795060 ATAATAATAATTTACGTTG
1 ATAATAATTATTTACGTTG
*
10795079 TTAACATAATTATTTACGTT-
1 AT-A-ATAATTATTTACGTTG
10795099 ATAATAA-TATTT
1 ATAATAATTATTT
10795111 TCTTACAGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
17 5 0.19
18 4 0.15
19 2 0.07
20 2 0.07
21 14 0.52
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (19 bp):
ATAATAATTATTTACGTTG
Found at i:10795495 original size:17 final size:17
Alignment explanation
Indices: 10795473--10795505 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
10795463 TGTTATCTAT
*
10795473 ATTTTTTTATTTATTTG
1 ATTTTTTTATATATTTG
10795490 ATTTTTTTATATATTT
1 ATTTTTTTATATATTT
10795506 ATAAGAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (17 bp):
ATTTTTTTATATATTTG
Found at i:10796084 original size:34 final size:34
Alignment explanation
Indices: 10796018--10796082 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
10796008 GTTAATTTTT
*
10796018 TTTCTTTGAAAGAATTTTATGTTAATATTTTTAA
1 TTTCTTTAAAAGAATTTTATGTTAATATTTTTAA
*
10796052 TTTCTTTAAAAGTATTTT-T-TATAATATTTTT
1 TTTCTTTAAAAGAATTTTATGT-TAATATTTTT
10796083 TAGCTATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 1 0.04
33 11 0.39
34 16 0.57
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.60
Consensus pattern (34 bp):
TTTCTTTAAAAGAATTTTATGTTAATATTTTTAA
Found at i:10797622 original size:6 final size:6
Alignment explanation
Indices: 10797611--10797636 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
10797601 GTTACTAATG
10797611 CATGAT CATGAT CATGAT CATGAT CA
1 CATGAT CATGAT CATGAT CATGAT CA
10797637 ATACAATTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (6 bp):
CATGAT
Found at i:10797951 original size:28 final size:27
Alignment explanation
Indices: 10797898--10797952 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
10797888 GAACCATATG
*
10797898 TAAGTTTTTCTGAAAATCGCTGATTTA
1 TAAGTTTTTCTGAAAATCGCTCATTTA
*
10797925 TAAGTTTTATCTGTAAAAT-TCTCATTTA
1 TAAGTTTT-TCTG-AAAATCGCTCATTTA
10797953 GGGACTGTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 8 0.33
28 11 0.46
29 5 0.21
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.47
Consensus pattern (27 bp):
TAAGTTTTTCTGAAAATCGCTCATTTA
Found at i:10798412 original size:19 final size:19
Alignment explanation
Indices: 10798380--10798418 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
10798370 AATTAAGAGT
*
10798380 AAAAAAGAATGAAAA-AAA
1 AAAAAAGAAAGAAAAGAAA
10798398 AAAAAAGGAAAGAAAAGAAA
1 AAAAAA-GAAAGAAAAGAAA
10798418 A
1 A
10798419 GAGAGAGTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 8 0.44
20 4 0.22
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (19 bp):
AAAAAAGAAAGAAAAGAAA
Found at i:10801144 original size:2 final size:2
Alignment explanation
Indices: 10801137--10801162 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
10801127 TTCCTTTATC
10801137 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
10801163 TTTTTATTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10801957 original size:29 final size:29
Alignment explanation
Indices: 10801925--10801983 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
10801915 CTTTCTGTTT
**
10801925 TCGTTCCGTCCTGTTTTCTTCTTTGCTTC
1 TCGTTCCGTCCTGTTTTCTTCCCTGCTTC
*
10801954 TCGTTCCGTTCTGTTTTCTTCCCTGCTTC
1 TCGTTCCGTCCTGTTTTCTTCCCTGCTTC
10801983 T
1 T
10801984 TTTTTCATGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.00, C:0.32, G:0.14, T:0.54
Consensus pattern (29 bp):
TCGTTCCGTCCTGTTTTCTTCCCTGCTTC
Found at i:10803461 original size:50 final size:51
Alignment explanation
Indices: 10803389--10803545 Score: 185
Period size: 56 Copynumber: 3.0 Consensus size: 51
10803379 CCTTACGGTA
* *
10803389 CATTTAATAATGTATCTTGGGTGACATTATTTTCCATATATATGAAAATTT
1 CATTTATTATTGTATCTTGGGTGACATTATTTTCCATATATATGAAAATTT
* *
10803440 -ATTTATTATTGTATCTTGGGTGAGATTATTTTCC--ATATCTGAAAATTTTATT
1 CATTTATTATTGTATCTTGGGTGACATTATTTTCCATATATATGAAAA---T-TT
*
10803492 GCACATTTATTATTGTATCTTGGATGACATTATTTTCCATATATATGAAAATTT
1 ---CATTTATTATTGTATCTTGGGTGACATTATTTTCCATATATATGAAAATTT
10803546 TGTTCCACTC
Statistics
Matches: 89, Mismatches: 7, Indels: 17
0.79 0.06 0.15
Matches are distributed among these distances:
48 10 0.11
50 31 0.35
51 1 0.01
52 2 0.02
54 2 0.02
55 1 0.01
56 32 0.36
58 10 0.11
ACGTcount: A:0.31, C:0.10, G:0.12, T:0.48
Consensus pattern (51 bp):
CATTTATTATTGTATCTTGGGTGACATTATTTTCCATATATATGAAAATTT
Found at i:10804439 original size:1 final size:1
Alignment explanation
Indices: 10804433--10804461 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
10804423 CTATTTTGAT
10804433 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
10804462 GAGATACATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:10811780 original size:13 final size:13
Alignment explanation
Indices: 10811762--10811808 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
10811752 TCTTAATGTC
*
10811762 TATATATGTTCTT
1 TATATATGTTATT
10811775 TATATATGTTATT
1 TATATATGTTATT
*
10811788 TATATATAGTTTTT
1 TATATAT-GTTATT
*
10811802 TTTATAT
1 TATATAT
10811809 ATACAATGTC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
13 19 0.63
14 11 0.37
ACGTcount: A:0.28, C:0.02, G:0.06, T:0.64
Consensus pattern (13 bp):
TATATATGTTATT
Found at i:10811809 original size:14 final size:15
Alignment explanation
Indices: 10811773--10811810 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
10811763 ATATATGTTC
10811773 TTTATATATGTTATT
1 TTTATATATGTTATT
* *
10811788 TATATATA-GTTTTT
1 TTTATATATGTTATT
10811802 TTTATATAT
1 TTTATATAT
10811811 ACAATGTCTG
Statistics
Matches: 19, Mismatches: 3, Indels: 2
0.79 0.12 0.08
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (15 bp):
TTTATATATGTTATT
Found at i:10813243 original size:161 final size:162
Alignment explanation
Indices: 10813019--10813801 Score: 627
Period size: 162 Copynumber: 4.8 Consensus size: 162
10813009 ACAATTTGAA
* * * * * * * * *
10813019 AGCTTCAATACATTATATTAAACTTGCCCAAATGATTAAACTTAGTTTCCAAGGTTGATATGTGT
1 AGCTTAAATACATGATATTAAACTTGTCCGAATGATTGAACTTGGTTTTCACGATTGATATGTGT
* * * * * *
10813084 GAAAAAGTTATCATTGATATCTTTTTAGGACTTTGTTATGCTGTT-AAGGGCAAAAATTTAATTT
66 GAAAAAGTTATCGTTTATATCTTTTTAGGACTTTGTTATACCGTTAAAAGGCAAAAATGTAATTT
10813148 TGTAGTTATATTCATGTTTTAATAGTTTAGAT
131 TGTAGTTATATTCATGTTTTAATAGTTTAGAT
* *
10813180 AGCTTAAATACATGATATTAAACTTGTTCGAATGATCGAACTTGGTTTTCACGATTGATATGTGT
1 AGCTTAAATACATGATATTAAACTTGTCCGAATGATTGAACTTGGTTTTCACGATTGATATGTGT
* * * * * * * *
10813245 GAAAAAGTTATCGTTTATGTCTGTTT-GGCACTTTTTTGTACCATTAAAAGGCCAAAATGCAAAT
66 GAAAAAGTTATCGTTTATATCTTTTTAGG-ACTTTGTTATACCGTTAAAAGGCAAAAATGTAATT
*
10813309 TTGTATTTATTATTC-TGTTTTAATAGTTTAGAT
130 TTGTAGTTA-TATTCATGTTTTAATAGTTTAGAT
* *
10813342 AGC-TATAATACATGATATTAAACTTGTCCGAATGATTGAACTTGATTTTCACGACTGATATGTG
1 AGCTTA-AATACATGATATTAAACTTGTCCGAATGATTGAACTTGGTTTTCACGATTGATATGTG
* * *
10813406 TGAAAATA-TTACCGTTTATATCTTTTTAGGACTTTGTTA-CCACGTTAAAAGGTAAAAATGTAA
65 TGAAAA-AGTTATCGTTTATATCTTTTTAGGACTTTGTTATAC-CGTTAAAAGGCAAAAATGTAA
* * * * *
10813469 TTTTGTAGTTATATTTATATTTTTACAATTTAGAT
128 TTTTGTAGTTATATTCATGTTTTAATAGTTTAGAT
* ** * **
10813504 AGCTTCAATACCTTCAATACATGATATTAAACTTATCTTAATGATTTAACTTGGTTTTCATAATT
1 AGC-T---TA-----AATACATGATATTAAACTTGTCCGAATGATTGAACTTGGTTTTCACGATT
* * * * * * * ** *
10813569 GATATGTATGAAAAAAG-TACCGTTTTATGTCTTTTTAAGACTTTATTGTATCACT-AAATGCAA
57 GATATGTGTG-AAAAAGTTATCG-TTTATATCTTTTTAGGACTTTGTTATACCGTTAAAAGGCAA
* ** * ** *
10813632 AAATATAATTTTACAGTTATATTTACATTTTAACAGTTTA-AGT
120 AAATGTAATTTTGTAGTTATATTCATGTTTTAATAGTTTAGA-T
* * * * * * * *
10813675 AACTTAAATACATGATATAAAACTTGTCCAAATTATTAAATTTAG-TTTCTACAATTTGATATGT
1 AGCTTAAATACATGATATTAAACTTGTCCGAATGATTGAACTTGGTTTTC-ACGA-TTGATATGT
* * * * * ** *
10813739 ATGAATAAGTTAT-GATTTATGTCTGTTTAGGACTTT-TTGTAATGTTAAAAGGAAAAAATGTAA
64 GTGAAAAAGTTATCG-TTTATATCTTTTTAGGACTTTGTTATACCGTTAAAAGGCAAAAATGTAA
10813802 ATTTACAATT
Statistics
Matches: 501, Mismatches: 95, Indels: 51
0.77 0.15 0.08
Matches are distributed among these distances:
160 2 0.00
161 104 0.21
162 240 0.48
163 22 0.04
167 4 0.01
170 2 0.00
171 100 0.20
172 27 0.05
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (162 bp):
AGCTTAAATACATGATATTAAACTTGTCCGAATGATTGAACTTGGTTTTCACGATTGATATGTGT
GAAAAAGTTATCGTTTATATCTTTTTAGGACTTTGTTATACCGTTAAAAGGCAAAAATGTAATTT
TGTAGTTATATTCATGTTTTAATAGTTTAGAT
Found at i:10813643 original size:171 final size:170
Alignment explanation
Indices: 10813348--10813671 Score: 391
Period size: 171 Copynumber: 1.9 Consensus size: 170
10813338 AGATAGCTAT
* * * *
10813348 AATACATGATATTAAACTTGTCCGAATGATTGAACTTGATTTTCACGACTGATATGTGTGAAAAT
1 AATACATGATATTAAACTTATCCGAATGATTGAACTTGATTTTCACAACTGATATGTATGAAAAA
* * * * **
10813413 ATTACCGTTTATATCTTTTTAGGACTTTGTTACCACGTTAAAAGGTAAAAATGTAATTTTGTAGT
66 AGTACCGTTTATATCTTTTTAAGACTTTGTTACCACG-TAAAAGGCAAAAATATAATTTTACAGT
* *
10813478 TATATTTATATTTTTACAATTTAGATAGCTTCAATACCTTC
130 TATATTTACATTTTAACAATTTAGATAGCTTCAATACCTTC
** * * * *
10813519 AATACATGATATTAAACTTATCTTAATGATTTAACTTGGTTTTCATAATTGATATGTATGAAAAA
1 AATACATGATATTAAACTTATCCGAATGATTGAACTTGATTTTCACAACTGATATGTATGAAAAA
* * * *
10813584 AGTACCGTTTTATGTCTTTTTAAGACTTTATTGTATCAC-T-AAATGCAAAAATATAATTTTACA
66 AGTACCG-TTTATATCTTTTTAAGACTTT-GT-TACCACGTAAAAGGCAAAAATATAATTTTACA
*
10813647 GTTATATTTACATTTTAACAGTTTA
128 GTTATATTTACATTTTAACAATTTA
10813672 AGTAACTTAA
Statistics
Matches: 127, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
171 101 0.80
172 20 0.16
173 1 0.01
174 5 0.04
ACGTcount: A:0.35, C:0.11, G:0.12, T:0.43
Consensus pattern (170 bp):
AATACATGATATTAAACTTATCCGAATGATTGAACTTGATTTTCACAACTGATATGTATGAAAAA
AGTACCGTTTATATCTTTTTAAGACTTTGTTACCACGTAAAAGGCAAAAATATAATTTTACAGTT
ATATTTACATTTTAACAATTTAGATAGCTTCAATACCTTC
Found at i:10816029 original size:13 final size:13
Alignment explanation
Indices: 10816013--10816051 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
10816003 TTAATTTTTA
*
10816013 ATTTTTATATATT
1 ATTTTAATATATT
**
10816026 ATTTTAATATAAA
1 ATTTTAATATATT
10816039 ATTTTAATATATT
1 ATTTTAATATATT
10816052 TAAGTAAATT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
ATTTTAATATATT
Found at i:10817024 original size:21 final size:22
Alignment explanation
Indices: 10817000--10817048 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 22
10816990 AGGAACAAGT
*
10817000 ATAAAAAAATATTCTT-GTAAC
1 ATAAAAAAATATTCTTGGCAAC
* *
10817021 AT-AAATAATATTTTTGGCAAC
1 ATAAAAAAATATTCTTGGCAAC
10817042 ATAAAAA
1 ATAAAAA
10817049 TTATTATTAC
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
20 11 0.50
21 8 0.36
22 3 0.14
ACGTcount: A:0.53, C:0.08, G:0.06, T:0.33
Consensus pattern (22 bp):
ATAAAAAAATATTCTTGGCAAC
Found at i:10817032 original size:20 final size:21
Alignment explanation
Indices: 10817007--10817046 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
10816997 AGTATAAAAA
*
10817007 AATATTCTT-GTAACATAAAT
1 AATATTCTTGGCAACATAAAT
*
10817027 AATATTTTTGGCAACATAAA
1 AATATTCTTGGCAACATAAA
10817047 AATTATTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.45, C:0.10, G:0.07, T:0.38
Consensus pattern (21 bp):
AATATTCTTGGCAACATAAAT
Found at i:10817942 original size:18 final size:18
Alignment explanation
Indices: 10817919--10817955 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
10817909 TGTAATTAAG
10817919 TAAATTGAT-TTCATAAAA
1 TAAATTGATATT-ATAAAA
10817937 TAAATTGATATTATAAAA
1 TAAATTGATATTATAAAA
10817955 T
1 T
10817956 TAAAAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 16 0.89
19 2 0.11
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (18 bp):
TAAATTGATATTATAAAA
Found at i:10818004 original size:31 final size:30
Alignment explanation
Indices: 10817952--10818009 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
10817942 TGATATTATA
*
10817952 AAATTAAAAAATATATCAAAATTTATTTGTT
1 AAATTAAAAAATAAATCAAAA-TTATTTGTT
*
10817983 AAATTAATAAATTAAAT-AAAATTATTT
1 AAATTAA-AAAATAAATCAAAATTATTT
10818010 ATACTTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 6 0.25
31 11 0.46
32 7 0.29
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (30 bp):
AAATTAAAAAATAAATCAAAATTATTTGTT
Found at i:10819858 original size:13 final size:13
Alignment explanation
Indices: 10819840--10819864 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10819830 TCCTGAGTTG
10819840 AAAAATAAAAAAT
1 AAAAATAAAAAAT
10819853 AAAAATAAAAAA
1 AAAAATAAAAAA
10819865 CTGGCCGGAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:10821552 original size:14 final size:14
Alignment explanation
Indices: 10821533--10821565 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
10821523 AGAAATAAAA
10821533 ATAAACTTAAAT-TT
1 ATAAAC-TAAATATT
10821547 ATAAACTAAATATT
1 ATAAACTAAATATT
10821561 ATAAA
1 ATAAA
10821566 TACATAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (14 bp):
ATAAACTAAATATT
Found at i:10822295 original size:21 final size:20
Alignment explanation
Indices: 10822258--10822296 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
10822248 AAATTAGACA
* *
10822258 AAAATTTAAGGATTTAACCC
1 AAAATTTAAGAAGTTAACCC
10822278 AAAATTTAAGAAAGTTAAC
1 AAAATTTAAG-AAGTTAAC
10822297 ATGAAATTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.51, C:0.10, G:0.10, T:0.28
Consensus pattern (20 bp):
AAAATTTAAGAAGTTAACCC
Found at i:10822620 original size:61 final size:59
Alignment explanation
Indices: 10822532--10822747 Score: 147
Period size: 60 Copynumber: 3.6 Consensus size: 59
10822522 TTTTTCAAAA
* * *
10822532 TTTTTTTTGGATTATTAAAAGT-ATTTTTAACTAAAAA-AGCCTTAAATAATCTCC-TCCATT
1 TTTTTTTTGGATTATTCAAGGTGTTTTTTAAC-AAAAACA-CCTTAAATAATC-CCTTCCA-T
* * * *
10822592 TTTTTTTTGGATTATTCAAGGTGTTTTTTTGACAAAAACACCTTGAATACTCCCTTTTCAT
1 TTTTTTTTGGATTATTCAAGGTG-TTTTTTAACAAAAACACCTTAAATAATCCC-TTCCAT
* * * * * * * *
10822653 TTTTTTTTGGATTATTCAAGGCG-TTTCTAGCCAAAAATACTTTGAATAATCTCTTTC-T
1 TTTTTTTTGGATTATTCAAGGTGTTTTTTA-ACAAAAACACCTTAAATAATCCCTTCCAT
** * *
10822711 ATTTTTTGGGGATTATTCAATGCGTTTTTT-ACAAAAA
1 -TTTTTTTTGGATTATTCAAGGTGTTTTTTAACAAAAA
10822748 AAAAAAAAAA
Statistics
Matches: 128, Mismatches: 20, Indels: 18
0.77 0.12 0.11
Matches are distributed among these distances:
58 7 0.05
59 28 0.22
60 44 0.34
61 38 0.30
62 11 0.09
ACGTcount: A:0.29, C:0.14, G:0.11, T:0.46
Consensus pattern (59 bp):
TTTTTTTTGGATTATTCAAGGTGTTTTTTAACAAAAACACCTTAAATAATCCCTTCCAT
Found at i:10822698 original size:60 final size:58
Alignment explanation
Indices: 10822591--10822737 Score: 159
Period size: 59 Copynumber: 2.5 Consensus size: 58
10822581 TCTCCTCCAT
* * * *
10822591 TTTTTTTTTGGATTATTCAAGGTGTTTTTTTGACAAAAACACCTTGAATACTCCCTTTTC
1 TTTTTTTTTGGATTATTCAAGGCG-TTTCTAGACAAAAACACCTTGAATAATCCC-TTTC
* * * *
10822651 ATTTTTTTTTGGATTATTCAAGGCGTTTCTAGCCAAAAATACTTTGAATAATCTCTTTC
1 -TTTTTTTTTGGATTATTCAAGGCGTTTCTAGACAAAAACACCTTGAATAATCCCTTTC
** *
10822710 TATTTTTTGGGGATTATTCAATGCGTTT
1 T-TTTTTTTTGGATTATTCAAGGCGTTT
10822738 TTTACAAAAA
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
58 1 0.01
59 27 0.36
60 23 0.31
61 23 0.31
ACGTcount: A:0.24, C:0.14, G:0.14, T:0.48
Consensus pattern (58 bp):
TTTTTTTTTGGATTATTCAAGGCGTTTCTAGACAAAAACACCTTGAATAATCCCTTTC
Found at i:10822982 original size:60 final size:61
Alignment explanation
Indices: 10822885--10823001 Score: 139
Period size: 60 Copynumber: 1.9 Consensus size: 61
10822875 CTTCCAATTT
** * *
10822885 TTTTTTTTGAGATTATTCATGGCGTTTTTAGCAAAAAAACGCATTGAATAATCTATTTTCA
1 TTTTTTTTGAGATTATTCAAAGCATTTTTAGCAAAAAAACACATTGAATAATCTATTTTCA
* * **
10822946 TTTTTTTTG-GATTATTCAAAGCATTTTTGGTC-AAAAAATATTTTGAATAATCTATT
1 TTTTTTTTGAGATTATTCAAAGCATTTTTAG-CAAAAAAACACATTGAATAATCTATT
10823002 ACAAAAAAAT
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
60 37 0.79
61 10 0.21
ACGTcount: A:0.32, C:0.09, G:0.12, T:0.47
Consensus pattern (61 bp):
TTTTTTTTGAGATTATTCAAAGCATTTTTAGCAAAAAAACACATTGAATAATCTATTTTCA
Found at i:10826025 original size:193 final size:194
Alignment explanation
Indices: 10825696--10826083 Score: 715
Period size: 193 Copynumber: 2.0 Consensus size: 194
10825686 TTTTTATTTA
*
10825696 TTAAAAAAAATTATTCTCGAGAAAAATAAATCAAAATCTTTTTATTGAAATAATTCTTAAAATGT
1 TTAAAAAAAATTATTCTCGAGAAAAATAAATCAAAACCTTTTTATTGAAATAATTCTTAAAATGT
10825761 TCCAGTACGTTGGTAACATTAAAAGAACTCATTCTCACCTAGAGATTTCTTAAAGCATCTCTACT
66 TCCAGTACGTTGGTAACATTAAAAGAACTCATTCTCACCTAGAGATTTCTTAAAGCATCTCTACT
10825826 CGGAATACTTTTAGAATCTCATCTTTGGAGGCTCGAATTTATTTTTCGTAAGAAA-ATGTCATG
131 CGGAATACTTTTAGAATCTCATCTTTGGAGGCTCGAATTTATTTTTCGTAAGAAATATGTCATG
* *
10825889 TTAAAAAAAATTGTTCTCGAGAAAAATAAATTAAAACCTTTTTATTGAAATAATTCTTAAAATGT
1 TTAAAAAAAATTATTCTCGAGAAAAATAAATCAAAACCTTTTTATTGAAATAATTCTTAAAATGT
* *
10825954 TTCAGTACGTTGGTAACATTAAAAGAACTCTTTCTCACCTAGAGATTTCTTAAAGCATCTCTACT
66 TCCAGTACGTTGGTAACATTAAAAGAACTCATTCTCACCTAGAGATTTCTTAAAGCATCTCTACT
10826019 CGGAATACTTTTAGAATCTCATCTTTGGAGGCTCGAATTTATTTTTCGTAAGAAATTATGTCATG
131 CGGAATACTTTTAGAATCTCATCTTTGGAGGCTCGAATTTATTTTTCGTAAGAAA-TATGTCATG
10826084 CATGCCATGC
Statistics
Matches: 188, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
193 180 0.96
195 8 0.04
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.37
Consensus pattern (194 bp):
TTAAAAAAAATTATTCTCGAGAAAAATAAATCAAAACCTTTTTATTGAAATAATTCTTAAAATGT
TCCAGTACGTTGGTAACATTAAAAGAACTCATTCTCACCTAGAGATTTCTTAAAGCATCTCTACT
CGGAATACTTTTAGAATCTCATCTTTGGAGGCTCGAATTTATTTTTCGTAAGAAATATGTCATG
Found at i:10833248 original size:12 final size:12
Alignment explanation
Indices: 10833231--10833255 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10833221 TTGAAAAATT
10833231 AAATAATAACAA
1 AAATAATAACAA
10833243 AAATAATAACAA
1 AAATAATAACAA
10833255 A
1 A
10833256 TTAGGCCATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (12 bp):
AAATAATAACAA
Found at i:10833816 original size:22 final size:23
Alignment explanation
Indices: 10833790--10833842 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
10833780 TCGATGTTGG
10833790 ATTAATAAAA-ATTTTATAATTTT
1 ATTAA-AAAACATTTTATAATTTT
*
10833813 -TTAAAAAACCTTTTTATAATTTT
1 ATTAAAAAA-CATTTTATAATTTT
10833836 ATTAAAA
1 ATTAAAA
10833843 TTTTTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 4 0.15
22 4 0.15
23 12 0.46
24 6 0.23
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (23 bp):
ATTAAAAAACATTTTATAATTTT
Found at i:10834127 original size:3 final size:3
Alignment explanation
Indices: 10834119--10834179 Score: 122
Period size: 3 Copynumber: 20.3 Consensus size: 3
10834109 TATAACATTC
10834119 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
10834167 ATT ATT ATT ATT A
1 ATT ATT ATT ATT A
10834180 CTTAGGGCAT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:10834664 original size:21 final size:22
Alignment explanation
Indices: 10834640--10834693 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
10834630 TGTTTAAAAA
10834640 TTTATTGTTTGAAATATATT-T
1 TTTATTGTTTGAAATATATTAT
* * ** *
10834661 TTTATTATTTTATTTATTTTAT
1 TTTATTGTTTGAAATATATTAT
10834683 TTTATTGTTTG
1 TTTATTGTTTG
10834694 TAATTTTTTA
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 15 0.60
22 10 0.40
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.70
Consensus pattern (22 bp):
TTTATTGTTTGAAATATATTAT
Found at i:10835146 original size:23 final size:22
Alignment explanation
Indices: 10835120--10835171 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 22
10835110 TTTAAGTTTT
10835120 TTTTTTTTACTATAAAATCCAA
1 TTTTTTTTACTATAAAATCCAA
*
10835142 CTTTTATTTACTATAAAATCCAA
1 -TTTTTTTTACTATAAAATCCAA
10835165 TTTTTTT
1 TTTTTTT
10835172 CTAATTCATT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 6 0.22
23 21 0.78
ACGTcount: A:0.33, C:0.13, G:0.00, T:0.54
Consensus pattern (22 bp):
TTTTTTTTACTATAAAATCCAA
Found at i:10837079 original size:16 final size:17
Alignment explanation
Indices: 10837048--10837081 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
10837038 TTGGTTTTTT
10837048 TTTTTTTTTGAAGTAAAA
1 TTTTTTTTTG-AGTAAAA
10837066 TTTTTTTTTG-GTAAAA
1 TTTTTTTTTGAGTAAAA
10837082 AAAATCATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
18 10 0.62
ACGTcount: A:0.29, C:0.00, G:0.12, T:0.59
Consensus pattern (17 bp):
TTTTTTTTTGAGTAAAA
Found at i:10837951 original size:2 final size:2
Alignment explanation
Indices: 10837946--10837979 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
10837936 AATATGTGTG
* *
10837946 TA TA TA TA TA TA TG TG TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10837980 GATAGATAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10837956 original size:16 final size:16
Alignment explanation
Indices: 10837932--10837974 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
10837922 AAGATTAAAC
* *
10837932 TATAAATATGTGTGTA
1 TATATATATATGTGTA
10837948 TATATATATATGTGTA
1 TATATATATATGTGTA
10837964 TATATATATAT
1 TATATATATAT
10837975 ATATAGATAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.49
Consensus pattern (16 bp):
TATATATATATGTGTA
Found at i:10837958 original size:18 final size:18
Alignment explanation
Indices: 10837932--10837976 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
10837922 AAGATTAAAC
* *
10837932 TATAAATATGTGTGTATA
1 TATATATATGTGTATATA
10837950 TATATATATGTGTATATA
1 TATATATATGTGTATATA
10837968 TATATATAT
1 TATATATAT
10837977 ATAGATAGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (18 bp):
TATATATATGTGTATATA
Found at i:10840054 original size:10 final size:10
Alignment explanation
Indices: 10840033--10840062 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
10840023 TTCCTAAAAA
10840033 TATTTAATTTT
1 TATTT-ATTTT
10840044 TATTTATTTT
1 TATTTATTTT
10840054 TATTTATTT
1 TATTTATTT
10840063 ATTAAATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 14 0.74
11 5 0.26
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (10 bp):
TATTTATTTT
Found at i:10840128 original size:23 final size:23
Alignment explanation
Indices: 10840055--10840192 Score: 101
Period size: 23 Copynumber: 6.0 Consensus size: 23
10840045 ATTTATTTTT
10840055 ATTTATTTA-TTAA-ATTTAATAA
1 ATTTATTTATTTAATATTT-ATAA
* *
10840077 A-TTATTT-TTAACAATATTT-TAT
1 ATTTATTTATT--TAATATTTATAA
*
10840099 A-TT-TTTATTTATTATTTATAA
1 ATTTATTTATTTAATATTTATAA
* *
10840120 ATTTATTTATTTACATATATTTTTAT
1 ATTTATTTATTT--A-ATATTTATAA
10840146 ATTTATTTATTTAATATTTATAA
1 ATTTATTTATTTAATATTTATAA
* * *
10840169 ATATATTCATTTAATATTCATAA
1 ATTTATTTATTTAATATTTATAA
10840192 A
1 A
10840193 AAAATTTATA
Statistics
Matches: 92, Mismatches: 13, Indels: 21
0.73 0.10 0.17
Matches are distributed among these distances:
20 6 0.07
21 13 0.14
22 10 0.11
23 38 0.41
24 5 0.05
25 1 0.01
26 19 0.21
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (23 bp):
ATTTATTTATTTAATATTTATAA
Found at i:10840164 original size:49 final size:48
Alignment explanation
Indices: 10840048--10840185 Score: 159
Period size: 49 Copynumber: 3.0 Consensus size: 48
10840038 AATTTTTATT
*
10840048 TATTTT-TATTTATTTA-TTAA-ATTTAATAAA-TTATTT-TTAACA-A
1 TATTTTATATTTATTTATTTAATATTT-ATAAATTTATTTATTTACATA
*
10840091 TATTTTATA-TT-TTTATTTATTATTTATAAATTTATTTATTTACATA
1 TATTTTATATTTATTTATTTAATATTTATAAATTTATTTATTTACATA
* *
10840137 TATTTTTATATTTATTTATTTAATATTTATAAATATATTCATTTA-ATA
1 TA-TTTTATATTTATTTATTTAATATTTATAAATTTATTTATTTACATA
10840185 T
1 T
10840186 TCATAAAAAA
Statistics
Matches: 81, Mismatches: 5, Indels: 13
0.82 0.05 0.13
Matches are distributed among these distances:
42 4 0.05
43 16 0.20
44 12 0.15
45 5 0.06
46 3 0.04
47 7 0.09
48 6 0.07
49 28 0.35
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (48 bp):
TATTTTATATTTATTTATTTAATATTTATAAATTTATTTATTTACATA
Found at i:10846016 original size:3 final size:3
Alignment explanation
Indices: 10846010--10846051 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
10846000 AAATTATTAC
* *
10846010 TAA TAA TAA T-A TAA -AA TAA CAA TAA TAA TAA TAA CAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
10846052 TCATAAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
2 4 0.12
3 29 0.88
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:10847219 original size:40 final size:39
Alignment explanation
Indices: 10847168--10847435 Score: 285
Period size: 40 Copynumber: 6.7 Consensus size: 39
10847158 TTCTAACTAG
* * * *
10847168 AGGCAATAAACTTTAAATGTTAAAATGCT-ACTTTCACCAG
1 AGGCAACAAACTTTAAATATTAAAA-GCTCA-TTTAACCAA
10847208 AGGCAACAAACTTTAAATATTAAAAGACTCATTTAACCAA
1 AGGCAACAAACTTTAAATATTAAAAG-CTCATTTAACCAA
* * *
10847248 AGGCAAC-AA-TTTCAAATATTAAAAAGCTCCTTTTACCAG
1 AGGCAACAAACTTT-AAATATT-AAAAGCTCATTTAACCAA
* * *
10847287 AGGCAACGAACTTTAAAT-TCAAAAGAGCTCTTTTAACCAA
1 AGGCAACAAACTTTAAATAT-TAAA-AGCTCATTTAACCAA
* *
10847327 AAGCAACAAACTTTAAATACTAAAAGACTCATTTAACCAA
1 AGGCAACAAACTTTAAATATTAAAAG-CTCATTTAACCAA
*
10847367 AGGCAACAAACTTTAAATATTAAAAGGCTCTTTTAACCAA
1 AGGCAACAAACTTTAAATATTAAAA-GCTCATTTAACCAA
*
10847407 AGGCAAC-AACTTTAAATGTTAAAAAGCTC
1 AGGCAACAAACTTTAAATATT-AAAAGCTC
10847436 CACTCACATG
Statistics
Matches: 196, Mismatches: 20, Indels: 25
0.81 0.08 0.10
Matches are distributed among these distances:
38 3 0.02
39 49 0.25
40 139 0.71
41 5 0.03
ACGTcount: A:0.45, C:0.19, G:0.10, T:0.26
Consensus pattern (39 bp):
AGGCAACAAACTTTAAATATTAAAAGCTCATTTAACCAA
Found at i:10847271 original size:79 final size:77
Alignment explanation
Indices: 10847136--10847435 Score: 320
Period size: 79 Copynumber: 3.8 Consensus size: 77
10847126 AGAGGTTATG
* * * * * *
10847136 AAACTTTAAAT-TCAAAAGGC-CTTTCTAACTAGAGGCAATAAACTTTAAATGTTAAAATGCTAC
1 AAACTTTAAATATTAAAAGACTCTTT-TAACCAAAGGCAA-CAACTTTAAATATTAAAA-GCT-C
*
10847199 TTTCACCAGAGGCAAC
62 TTTAACCAGAGGCAAC
*
10847215 AAACTTTAAATATTAAAAGACTCATTTAACCAAAGGCAACAA-TTTCAAATATTAAAAAGCTCCT
1 AAACTTTAAATATTAAAAGACTCTTTTAACCAAAGGCAACAACTTT-AAATATT-AAAAGCT-CT
*
10847279 TTTACCAGAGGCAAC
63 TTAACCAGAGGCAAC
* * * *
10847294 GAACTTTAAAT-TCAAAAGAGCTCTTTTAACCAAAAGCAACAAACTTTAAATACTAAAAGACTCA
1 AAACTTTAAATATTAAAAGA-CTCTTTTAACCAAAGGCAAC-AACTTTAAATATTAAAAG-CTC-
*
10847358 TTTAACCAAAGGCAAC
62 TTTAACCAGAGGCAAC
* *
10847374 AAACTTTAAATATTAAAAGGCTCTTTTAACCAAAGGCAACAACTTTAAATGTTAAAAAGCTC
1 AAACTTTAAATATTAAAAGACTCTTTTAACCAAAGGCAACAACTTTAAATATT-AAAAGCTC
10847436 CACTCACATG
Statistics
Matches: 188, Mismatches: 22, Indels: 22
0.81 0.09 0.09
Matches are distributed among these distances:
78 10 0.05
79 86 0.46
80 80 0.43
81 12 0.06
ACGTcount: A:0.45, C:0.19, G:0.10, T:0.27
Consensus pattern (77 bp):
AAACTTTAAATATTAAAAGACTCTTTTAACCAAAGGCAACAACTTTAAATATTAAAAGCTCTTTA
ACCAGAGGCAAC
Found at i:10847414 original size:159 final size:159
Alignment explanation
Indices: 10847137--10847501 Score: 481
Period size: 159 Copynumber: 2.3 Consensus size: 159
10847127 GAGGTTATGA
* * * **
10847137 AACTTTAAATTCAAAAG-GC-CTTTCTAACTAGAGGCAATAAACTTTAAATGTTAAAATGCTACT
1 AACTTTAAATTCAAAAGAGCTCTTT-TAACTAAAAGCAACAAACTTTAAATACTAAAATGCTACT
* *
10847200 TTCACCAGAGGCAACAAACTTTAAATATTAAAAGACTCATTTAACCAAAGGCAACAA-TTTCAAA
65 TTAACCAAAGGCAACAAACTTTAAATATTAAAAGACTCATTTAACCAAAGGCAACAACTTT-AAA
** * ** *
10847264 TATTAAAAAGCTCCTTTTACCA-GAGGCAACG
129 TATTAAAAAGCTCCACTCA-CATGAAACAAAG
*
10847295 AACTTTAAATTCAAAAGAGCTCTTTTAACCAAAAGCAACAAACTTTAAATACTAAAA-GACT-CA
1 AACTTTAAATTCAAAAGAGCTCTTTTAACTAAAAGCAACAAACTTTAAATACTAAAATG-CTAC-
* *
10847358 TTTAACCAAAGGCAACAAACTTTAAATATTAAAAGGCTCTTTTAACCAAAGGCAACAACTTTAAA
64 TTTAACCAAAGGCAACAAACTTTAAATATTAAAAGACTCATTTAACCAAAGGCAACAACTTTAAA
*
10847423 TGTTAAAAAGCTCCACTCACATGAAACAAAG
129 TATTAAAAAGCTCCACTCACATGAAACAAAG
*
10847454 AACTTTAAATTCAAAAGAGCTCTTTTAACTAAAAACAACAAACTTTAA
1 AACTTTAAATTCAAAAGAGCTCTTTTAACTAAAAGCAACAAACTTTAA
10847502 CCAAATGCAA
Statistics
Matches: 182, Mismatches: 19, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
158 21 0.12
159 154 0.85
160 7 0.04
ACGTcount: A:0.45, C:0.19, G:0.09, T:0.26
Consensus pattern (159 bp):
AACTTTAAATTCAAAAGAGCTCTTTTAACTAAAAGCAACAAACTTTAAATACTAAAATGCTACTT
TAACCAAAGGCAACAAACTTTAAATATTAAAAGACTCATTTAACCAAAGGCAACAACTTTAAATA
TTAAAAAGCTCCACTCACATGAAACAAAG
Found at i:10847458 original size:119 final size:119
Alignment explanation
Indices: 10847136--10847501 Score: 392
Period size: 119 Copynumber: 3.1 Consensus size: 119
10847126 AGAGGTTATG
* * * * *
10847136 AAACTTTAAAT-TCAAAAGGC-CTTTCTAACTAGAGGCAATAAACTTTAAATGTTAAAATGCTAC
1 AAACTTTAAATATTAAAAGGCTCTTT-TAACCAGAGGCAA-CAACTTTAAATGTTAAAAAGCTCC
** *
10847199 TTTCACCAGAGGCAACAAACTTTAAATATTAAAAGACTCATTTAACCAAAGGCAAC
64 TTTCACCAGAAACAACAAACTTTAAATACTAAAAGACTCATTTAACCAAAGGCAAC
* *
10847255 -AA-TTTCAAATATTAAAAAGCTCCTTTT-ACCAGAGGCAACGAACTTTAAAT-TCAAAAGAGCT
1 AAACTTT-AAATATTAAAAGGCT-CTTTTAACCAGAGGCAAC-AACTTTAAATGTTAAAA-AGCT
* *
10847316 CTTTTAACCA-AAAGCAACAAACTTTAAATACTAAAAGACTCATTTAACCAAAGGCAAC
62 CCTTTCACCAGAAA-CAACAAACTTTAAATACTAAAAGACTCATTTAACCAAAGGCAAC
* **
10847374 AAACTTTAAATATTAAAAGGCTCTTTTAACCAAAGGCAACAACTTTAAATGTTAAAAAGCTCCAC
1 AAACTTTAAATATTAAAAGGCTCTTTTAACCAGAGGCAACAACTTTAAATGTTAAAAAGCTCCTT
* * * **
10847439 TCA-CATGAAACAA-AGAACTTTAAATTC-AAAAGAGCTCTTTTAACTAAAAACAAC
66 TCACCA-GAAACAACA-AACTTTAAATACTAAAAGA-CTCATTTAACCAAAGGCAAC
10847493 AAACTTTAA
1 AAACTTTAA
10847502 CCAAATGCAA
Statistics
Matches: 208, Mismatches: 24, Indels: 30
0.79 0.09 0.11
Matches are distributed among these distances:
117 3 0.01
118 21 0.10
119 141 0.68
120 36 0.17
121 7 0.03
ACGTcount: A:0.46, C:0.19, G:0.09, T:0.26
Consensus pattern (119 bp):
AAACTTTAAATATTAAAAGGCTCTTTTAACCAGAGGCAACAACTTTAAATGTTAAAAAGCTCCTT
TCACCAGAAACAACAAACTTTAAATACTAAAAGACTCATTTAACCAAAGGCAAC
Found at i:10847490 original size:40 final size:40
Alignment explanation
Indices: 10847136--10847501 Score: 251
Period size: 40 Copynumber: 9.2 Consensus size: 40
10847126 AGAGGTTATG
* * * *
10847136 AAACTTTAAATTCAAAAG-GC-CTTTCTAACTAGAGGCAAT
1 AAACTTTAAATTCAAAAGAGCTCTTT-TAACCAAAAGCAAC
* * * * *
10847175 AAACTTTAAATGTTAAAA-TGCTAC-TTTCACCAGAGGCAAC
1 AAACTTTAAAT-TCAAAAGAGCT-CTTTTAACCAAAAGCAAC
* * *
10847215 AAACTTTAAATATTAAAAGA-CTCATTTAACCAAAGGCAAC
1 AAACTTTAAAT-TCAAAAGAGCTCTTTTAACCAAAAGCAAC
* * *
10847255 -AA-TTTCAAATATTAAAA-AGCTCCTTTT-ACCAGAGGCAAC
1 AAACTTT-AAAT-TCAAAAGAGCT-CTTTTAACCAAAAGCAAC
*
10847294 GAACTTTAAATTCAAAAGAGCTCTTTTAACCAAAAGCAAC
1 AAACTTTAAATTCAAAAGAGCTCTTTTAACCAAAAGCAAC
* * *
10847334 AAACTTTAAATACTAAAAGA-CTCATTTAACCAAAGGCAAC
1 AAACTTTAAATTC-AAAAGAGCTCTTTTAACCAAAAGCAAC
* *
10847374 AAACTTTAAATATTAAAAG-GCTCTTTTAACCAAAGGCAAC
1 AAACTTTAAAT-TCAAAAGAGCTCTTTTAACCAAAAGCAAC
* *** *
10847414 -AACTTTAAATGTTAAAA-AGCTCCACTCA-CATGAAA-CAA-
1 AAACTTTAAAT-TCAAAAGAGCTCTTTTAACCA--AAAGCAAC
* *
10847452 AGAACTTTAAATTCAAAAGAGCTCTTTTAACTAAAAACAAC
1 A-AACTTTAAATTCAAAAGAGCTCTTTTAACCAAAAGCAAC
10847493 AAACTTTAA
1 AAACTTTAA
10847502 CCAAATGCAA
Statistics
Matches: 270, Mismatches: 32, Indels: 49
0.77 0.09 0.14
Matches are distributed among these distances:
38 6 0.02
39 81 0.30
40 169 0.63
41 13 0.05
42 1 0.00
ACGTcount: A:0.46, C:0.19, G:0.09, T:0.26
Consensus pattern (40 bp):
AAACTTTAAATTCAAAAGAGCTCTTTTAACCAAAAGCAAC
Found at i:10847500 original size:20 final size:20
Alignment explanation
Indices: 10847477--10847521 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
10847467 AAAGAGCTCT
*
10847477 TTTAACTAAAAACAACAAAC
1 TTTAACCAAAAACAACAAAC
**
10847497 TTTAACCAAATGCAACAAAC
1 TTTAACCAAAAACAACAAAC
10847517 TTTAA
1 TTTAA
10847522 ATATTAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.53, C:0.20, G:0.02, T:0.24
Consensus pattern (20 bp):
TTTAACCAAAAACAACAAAC
Found at i:10847625 original size:73 final size:73
Alignment explanation
Indices: 10847497--10847636 Score: 217
Period size: 73 Copynumber: 1.9 Consensus size: 73
10847487 AACAACAAAC
* * *
10847497 TTTAACCAAATGCAACAAACTTTAAATATTAAAAAGCTCCTCTCACCAGAGGCAACGAACTTTAA
1 TTTAACCAAAGGCAACAAACTTTAAATATTAAAAAGCTCATCTCACCAGAAGCAACGAACTTTAA
10847562 ATGGCTCA
66 ATGGCTCA
* * * *
10847570 TTTAACCAAAGGTAACAAATTTTAAATATTAAAAAGCTCATCTTATCAGAAGCAACGAACTTTAA
1 TTTAACCAAAGGCAACAAACTTTAAATATTAAAAAGCTCATCTCACCAGAAGCAACGAACTTTAA
10847635 AT
66 AT
10847637 TAAAAATCTG
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
73 60 1.00
ACGTcount: A:0.44, C:0.19, G:0.10, T:0.27
Consensus pattern (73 bp):
TTTAACCAAAGGCAACAAACTTTAAATATTAAAAAGCTCATCTCACCAGAAGCAACGAACTTTAA
ATGGCTCA
Found at i:10847814 original size:39 final size:40
Alignment explanation
Indices: 10847742--10847895 Score: 152
Period size: 39 Copynumber: 3.9 Consensus size: 40
10847732 AAAGCTTTGT
* * * * *
10847742 TGACCAGAGGCTATGAAAATTTAAATGTTAAAAGACTCTTC
1 TGACCAAAGGCAAT-AAACTTTAAATGTCAAAAGGCTCTTC
* * * * *
10847783 TAACCAAAGGTAACAAATTTTAAAT-TCAAAAGGCTCCTC
1 TGACCAAAGGCAATAAACTTTAAATGTCAAAAGGCTCTTC
* * *
10847822 TGACTATAGGCAATAAACTTTAAATGTTAAAAGGCTCTTC
1 TGACCAAAGGCAATAAACTTTAAATGTCAAAAGGCTCTTC
*
10847862 -GACCAGAGGCAATAAACTTTAAAT-TCAAAAGGCT
1 TGACCAAAGGCAATAAACTTTAAATGTCAAAAGGCT
10847896 AAGAGGCAAT
Statistics
Matches: 92, Mismatches: 20, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
38 9 0.10
39 52 0.57
40 22 0.24
41 9 0.10
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (40 bp):
TGACCAAAGGCAATAAACTTTAAATGTCAAAAGGCTCTTC
Found at i:10859412 original size:3 final size:3
Alignment explanation
Indices: 10859401--10859441 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
10859391 TTGTTGTGAA
*
10859401 ATT AGT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
10859442 AAATTCTCCA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:10859957 original size:11 final size:11
Alignment explanation
Indices: 10859933--10859973 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
10859923 TATCAATTAC
10859933 TATTA-TTT-T
1 TATTATTTTAT
10859942 TATTATTTTAT
1 TATTATTTTAT
10859953 TATTATTTTAT
1 TATTATTTTAT
*
10859964 TATTGTTTTA
1 TATTATTTTA
10859974 CATTGTTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
9 5 0.17
10 3 0.10
11 21 0.72
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (11 bp):
TATTATTTTAT
Found at i:10860434 original size:12 final size:11
Alignment explanation
Indices: 10860405--10860449 Score: 58
Period size: 11 Copynumber: 4.2 Consensus size: 11
10860395 AAATAACAAT
*
10860405 AATATCATAAA
1 AATAACATAAA
10860416 AATAACATAAA
1 AATAACATAAA
10860427 AATCAACAT-AA
1 AAT-AACATAAA
10860438 AATAA-ATAAA
1 AATAACATAAA
10860448 AA
1 AA
10860450 AAGGGAAAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
9 2 0.06
10 6 0.19
11 18 0.58
12 5 0.16
ACGTcount: A:0.71, C:0.09, G:0.00, T:0.20
Consensus pattern (11 bp):
AATAACATAAA
Found at i:10862287 original size:40 final size:40
Alignment explanation
Indices: 10862239--10862322 Score: 168
Period size: 40 Copynumber: 2.1 Consensus size: 40
10862229 ATGATTATTA
10862239 AATTGCCATAGTAAATTTTTTATAAACTTTAATTTAAATG
1 AATTGCCATAGTAAATTTTTTATAAACTTTAATTTAAATG
10862279 AATTGCCATAGTAAATTTTTTATAAACTTTAATTTAAATG
1 AATTGCCATAGTAAATTTTTTATAAACTTTAATTTAAATG
10862319 AATT
1 AATT
10862323 TTTTTTTATT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.45
Consensus pattern (40 bp):
AATTGCCATAGTAAATTTTTTATAAACTTTAATTTAAATG
Found at i:10865194 original size:2 final size:2
Alignment explanation
Indices: 10865187--10865229 Score: 59
Period size: 2 Copynumber: 21.5 Consensus size: 2
10865177 CATCAAATCC
* * *
10865187 TA TA TA TA TA TA TA TA TA TA TA CA TA TA TA TA TT TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10865229 T
1 T
10865230 CTCTCTATGT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:10867698 original size:21 final size:23
Alignment explanation
Indices: 10867666--10867714 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
10867656 TATAATTAAA
*
10867666 TAAATTTAATATAAAATTAGA-T
1 TAAATTTAATATAAAATAAGATT
*
10867688 TAAATTT-ATATACAATAAGATT
1 TAAATTTAATATAAAATAAGATT
10867710 TAAAT
1 TAAAT
10867715 CGATACATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 11 0.46
22 13 0.54
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (23 bp):
TAAATTTAATATAAAATAAGATT
Found at i:10870159 original size:18 final size:18
Alignment explanation
Indices: 10870136--10870195 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 18
10870126 AATTTTACTT
10870136 ATAAATAATATTATATTA
1 ATAAATAATATTATATTA
**
10870154 ATAAATAATATGCTATTA
1 ATAAATAATATTATATTA
10870172 AT--AT-A-A-TATATTA
1 ATAAATAATATTATATTA
10870185 ATAAATAATAT
1 ATAAATAATAT
10870196 AAAGAATAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 10
0.70 0.09 0.21
Matches are distributed among these distances:
13 7 0.21
14 1 0.03
15 3 0.09
16 3 0.09
17 1 0.03
18 18 0.55
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (18 bp):
ATAAATAATATTATATTA
Found at i:10871881 original size:27 final size:27
Alignment explanation
Indices: 10871843--10871896 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
10871833 CATCATCACC
*
10871843 ATAATCATGATTCATGACCACCATGAT
1 ATAATCATGATTCAGGACCACCATGAT
10871870 ATAATCATGATTCAGGACCACCATGAT
1 ATAATCATGATTCAGGACCACCATGAT
10871897 TATAGAAGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (27 bp):
ATAATCATGATTCAGGACCACCATGAT
Found at i:10873993 original size:26 final size:26
Alignment explanation
Indices: 10873934--10874004 Score: 73
Period size: 26 Copynumber: 2.9 Consensus size: 26
10873924 TATTAATTTC
10873934 TTAAATTAAT-ATATCAA-ATA-ATAA
1 TTAAATTAATAATAT-AATATATATAA
*
10873958 TT---TTATTAATATAATATATATAA
1 TTAAATTAATAATATAATATATATAA
*
10873981 TTAAATTAATAATAAAATATATAT
1 TTAAATTAATAATATAATATATAT
10874005 TTTTATATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
21 6 0.16
22 7 0.18
23 6 0.16
24 2 0.05
26 17 0.45
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (26 bp):
TTAAATTAATAATATAATATATATAA
Done.