Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25818110
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 67000 characters in sequence are not A, C, G, or T
File 59 of 127
Found at i:11562539 original size:110 final size:111
Alignment explanation
Indices: 11562372--11562592 Score: 347
Period size: 110 Copynumber: 2.0 Consensus size: 111
11562362 TGCATTTAGG
* *
11562372 TTTTGCAATATAAACTATAAATTTCTCTATGACATTGACCATGTTGTTTCATTTAATTTATTAGC
1 TTTTGCAATATAAACTATAAATTTCTC-ATGACATTGACCATGTTGTTTAATTTAATTTATTAAC
* *
11562437 TTATAATTGATGCTTTCTTTCATTGTATCTTTTTTGTTTCTCCTATGA
65 TTATAATTGATGC-TTCTTTCATCGTATCTTTTTGGTTTCTCCTATGA
* *
11562485 TTTT-CAATATAAACTATAAATTTCTC-TGACCTTGACCATGTTGTTTAATTTAATTTTTTAACT
1 TTTTGCAATATAAACTATAAATTTCTCATGACATTGACCATGTTGTTTAATTTAATTTATTAACT
*
11562548 TATAATTGATGCTTCTTTCATCGTATCTTTTTGGTTTCTTCTATG
66 TATAATTGATGCTTCTTTCATCGTATCTTTTTGGTTTCTCCTATG
11562593 CAAAATGCTA
Statistics
Matches: 101, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
109 30 0.30
110 45 0.45
112 22 0.22
113 4 0.04
ACGTcount: A:0.24, C:0.14, G:0.10, T:0.52
Consensus pattern (111 bp):
TTTTGCAATATAAACTATAAATTTCTCATGACATTGACCATGTTGTTTAATTTAATTTATTAACT
TATAATTGATGCTTCTTTCATCGTATCTTTTTGGTTTCTCCTATGA
Found at i:11565625 original size:232 final size:232
Alignment explanation
Indices: 11565219--11565683 Score: 885
Period size: 232 Copynumber: 2.0 Consensus size: 232
11565209 CTTTAATCTC
*
11565219 TCACATTTGATGTAAAGCATCTTTCAGCTCATCATGATGATATTGGAGTTATTGAAAAAACTATA
1 TCACATTTGATGTAAAGCATCTTTCAGCTCATCAGGATGATATTGGAGTTATTGAAAAAACTATA
11565284 AAAACTATTTCAAAATAAGAATATAGGAACTTGCTGCTCTTTCTTCAAGGTAAGCCACATAACAT
66 AAAACTATTTCAAAATAAGAATATAGGAACTTGCTGCTCTTTCTTCAAGGTAAGCCACATAACAT
*
11565349 TATTTATATCATCATGTATACAATTGACTCTATATTAAATATTTGATTCTTCTTTTAACTGACAT
131 TATTTATATCATCATATATACAATTGACTCTATATTAAATATTTGATTCTTCTTTTAACTGACAT
11565414 CAAATTATCAAGTAATTATTTCCTACAATTTAGATAT
196 CAAATTATCAAGTAATTATTTCCTACAATTTAGATAT
11565451 TCACATTTGATGTAAAGCATCTTTCAGCTCATCAGGATGATATTGGAGTTATTGAAAAAACTATA
1 TCACATTTGATGTAAAGCATCTTTCAGCTCATCAGGATGATATTGGAGTTATTGAAAAAACTATA
* *
11565516 AAAACTATTTCAGAATAAGAATATAGGAACTTGTTGCTCTTTCTTCAAGGTAAGCCACATAACAT
66 AAAACTATTTCAAAATAAGAATATAGGAACTTGCTGCTCTTTCTTCAAGGTAAGCCACATAACAT
11565581 TATTTATATCATCATATATACAATTGACTCTATATTAAATATTTGATTCTTCTTTTAACTGACAT
131 TATTTATATCATCATATATACAATTGACTCTATATTAAATATTTGATTCTTCTTTTAACTGACAT
*
11565646 CAAATTATCAAGTAATTATTTCTTACAATTTAGATAT
196 CAAATTATCAAGTAATTATTTCCTACAATTTAGATAT
11565683 T
1 T
11565684 AATTGTATTA
Statistics
Matches: 228, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
232 228 1.00
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.38
Consensus pattern (232 bp):
TCACATTTGATGTAAAGCATCTTTCAGCTCATCAGGATGATATTGGAGTTATTGAAAAAACTATA
AAAACTATTTCAAAATAAGAATATAGGAACTTGCTGCTCTTTCTTCAAGGTAAGCCACATAACAT
TATTTATATCATCATATATACAATTGACTCTATATTAAATATTTGATTCTTCTTTTAACTGACAT
CAAATTATCAAGTAATTATTTCCTACAATTTAGATAT
Found at i:11568601 original size:19 final size:19
Alignment explanation
Indices: 11568577--11568627 Score: 102
Period size: 19 Copynumber: 2.7 Consensus size: 19
11568567 ACTACCATTG
11568577 AATTATGTTCAACATGTTA
1 AATTATGTTCAACATGTTA
11568596 AATTATGTTCAACATGTTA
1 AATTATGTTCAACATGTTA
11568615 AATTATGTTCAAC
1 AATTATGTTCAAC
11568628 GGGAAGTTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (19 bp):
AATTATGTTCAACATGTTA
Found at i:11570822 original size:13 final size:13
Alignment explanation
Indices: 11570789--11570823 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
11570779 CTATAAATTA
*
11570789 TTATAGAAATTTT
1 TTATAAAAATTTT
11570802 TTATTAAAAATTTT
1 TTA-TAAAAATTTT
11570816 TTATAAAA
1 TTATAAAA
11570824 GTATTACAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (13 bp):
TTATAAAAATTTT
Found at i:11571967 original size:81 final size:81
Alignment explanation
Indices: 11571803--11571951 Score: 217
Period size: 81 Copynumber: 1.8 Consensus size: 81
11571793 TTAGCTTTTA
* * *
11571803 TTTGTAATTACGATAGTTACACAAACATGATATTATAATACATTAACTTTGATTTTATTATTATA
1 TTTGTAATTACGATAGTTACACAAACAAGATATCATAATACATTAACTTTGATTTTATAATTATA
11571868 TTAAATAACATACCAT
66 TTAAATAACATACCAT
* * * * * *
11571884 TTTGTGATTATGATAGTTACAGAGACAAGGTATCATAATACATTAACTTTGATTTTGTAATTATA
1 TTTGTAATTACGATAGTTACACAAACAAGATATCATAATACATTAACTTTGATTTTATAATTATA
11571949 TTA
66 TTA
11571952 TTATGTCAAC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 59 1.00
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.42
Consensus pattern (81 bp):
TTTGTAATTACGATAGTTACACAAACAAGATATCATAATACATTAACTTTGATTTTATAATTATA
TTAAATAACATACCAT
Found at i:11577489 original size:3 final size:3
Alignment explanation
Indices: 11577481--11577519 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
11577471 AGTCAATGCC
11577481 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
11577520 GTAAAATATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:11578574 original size:21 final size:23
Alignment explanation
Indices: 11578550--11578605 Score: 68
Period size: 21 Copynumber: 2.7 Consensus size: 23
11578540 TTAATTATTT
*
11578550 AATTTTATA-TTTATA-TTAAAA
1 AATTTAATATTTTATATTTAAAA
11578571 AA-TTAATATTTTATATTTAAAA
1 AATTTAATATTTTATATTTAAAA
11578593 AA--TAATATTTTAT
1 AATTTAATATTTTAT
11578606 TAATTTCAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 5 0.16
21 19 0.59
22 8 0.25
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
AATTTAATATTTTATATTTAAAA
Found at i:11578611 original size:23 final size:22
Alignment explanation
Indices: 11578559--11578605 Score: 80
Period size: 21 Copynumber: 2.2 Consensus size: 22
11578549 TAATTTTATA
11578559 TTTATA-TTAAAAAATTAATAT
1 TTTATATTTAAAAAATTAATAT
11578580 TTTATATTTAAAAAA-TAATAT
1 TTTATATTTAAAAAATTAATAT
11578601 TTTAT
1 TTTAT
11578606 TAATTTCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 17 0.68
22 8 0.32
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TTTATATTTAAAAAATTAATAT
Found at i:11578783 original size:18 final size:18
Alignment explanation
Indices: 11578756--11578791 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
11578746 TTAGATAAGG
* *
11578756 GATAATAAAAAATGAAAA
1 GATAAAAAAAAAGGAAAA
11578774 GATAAAAAAAAAGGAAAA
1 GATAAAAAAAAAGGAAAA
11578792 AAAACAATAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.75, C:0.00, G:0.14, T:0.11
Consensus pattern (18 bp):
GATAAAAAAAAAGGAAAA
Found at i:11589971 original size:21 final size:22
Alignment explanation
Indices: 11589947--11589994 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
11589937 TTTTTAAATC
11589947 TTTATA-TTTAAAAAATAATAT
1 TTTATATTTTAAAAAATAATAT
11589968 TTTATATTTTAAAAAATAATAT
1 TTTATATTTTAAAAAATAATAT
11589990 TTTAT
1 TTTAT
11589995 TAATTTTCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 6 0.23
22 20 0.77
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
TTTATATTTTAAAAAATAATAT
Found at i:11599185 original size:25 final size:25
Alignment explanation
Indices: 11599154--11599224 Score: 124
Period size: 25 Copynumber: 2.8 Consensus size: 25
11599144 AGTACAAAAA
*
11599154 TTTTTATTAATTATAAATTTTTATT
1 TTTTTATTGATTATAAATTTTTATT
*
11599179 TTTTTATTGATTATAAATCTTTATT
1 TTTTTATTGATTATAAATTTTTATT
11599204 TTTTTATTGATTATAAATTTT
1 TTTTTATTGATTATAAATTTT
11599225 GATATTGAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.66
Consensus pattern (25 bp):
TTTTTATTGATTATAAATTTTTATT
Found at i:11604996 original size:11 final size:10
Alignment explanation
Indices: 11604965--11605118 Score: 68
Period size: 11 Copynumber: 15.2 Consensus size: 10
11604955 TATAATATAA
*
11604965 ATAAAATTTG
1 ATAAATTTTG
*
11604975 ATAACTTTTG
1 ATAAATTTTG
11604985 ATATAATTTTG
1 ATA-AATTTTG
11604996 ----ATTTTG
1 ATAAATTTTG
*
11605002 ATTATATTTT-
1 A-TAAATTTTG
11605012 ATAAAATTTTG
1 AT-AAATTTTG
* *
11605023 GT-AATTTTC
1 ATAAATTTTG
*
11605032 ACACAATTTTG
1 ATA-AATTTTG
* *
11605043 ATAACTTATG
1 ATAAATTTTG
*
11605053 ATATAATTTTA
1 ATA-AATTTTG
* *
11605064 ATAACTATTG
1 ATAAATTTTG
11605074 ATATAATTTTG
1 ATA-AATTTTG
* *
11605085 ATAATTTTTT
1 ATAAATTTTG
*
11605095 ATAAAATTTTA
1 AT-AAATTTTG
11605106 ATAAACTTTTG
1 ATAAA-TTTTG
11605117 AT
1 AT
11605119 GTAAGTTTAG
Statistics
Matches: 105, Mismatches: 25, Indels: 27
0.67 0.16 0.17
Matches are distributed among these distances:
6 6 0.06
9 7 0.07
10 43 0.41
11 49 0.47
ACGTcount: A:0.38, C:0.05, G:0.07, T:0.51
Consensus pattern (10 bp):
ATAAATTTTG
Found at i:11605085 original size:42 final size:43
Alignment explanation
Indices: 11605036--11605118 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 43
11605026 ATTTTCACAC
*
11605036 AATTTTGATAACTTATGATATAATTTTAAT-AACTATTGATAT
1 AATTTTGATAACTTATGATAAAATTTTAATAAACTATTGATAT
* * * *
11605078 AATTTTGATAATTTTTTATAAAATTTTAATAAACTTTTGAT
1 AATTTTGATAACTTATGATAAAATTTTAATAAACTATTGAT
11605119 GTAAGTTTAG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
42 26 0.74
43 9 0.26
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.51
Consensus pattern (43 bp):
AATTTTGATAACTTATGATAAAATTTTAATAAACTATTGATAT
Found at i:11605102 original size:21 final size:21
Alignment explanation
Indices: 11605008--11605118 Score: 91
Period size: 21 Copynumber: 5.3 Consensus size: 21
11604998 TTTGATTATA
*
11605008 TTTT-ATAAAATTTTGGTAA-
1 TTTTGATAAAATTTTGATAAC
* * *
11605027 TTTTCACACAATTTTGATAAC
1 TTTTGATAAAATTTTGATAAC
* * *
11605048 TTATGATATAATTTTAATAAC
1 TTTTGATAAAATTTTGATAAC
* * *
11605069 TATTGATATAATTTTGATAAT
1 TTTTGATAAAATTTTGATAAC
* *
11605090 TTTTTATAAAATTTTAATAAAC
1 TTTTGATAAAATTTTGAT-AAC
11605112 TTTTGAT
1 TTTTGAT
11605119 GTAAGTTTAG
Statistics
Matches: 71, Mismatches: 18, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
19 4 0.06
20 12 0.17
21 47 0.66
22 8 0.11
ACGTcount: A:0.38, C:0.05, G:0.06, T:0.50
Consensus pattern (21 bp):
TTTTGATAAAATTTTGATAAC
Found at i:11605372 original size:19 final size:19
Alignment explanation
Indices: 11605348--11605384 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
11605338 TATCAAGATG
11605348 AAATTTCTAACTTTGTTTA
1 AAATTTCTAACTTTGTTTA
11605367 AAATTTCTAACTTTGTTT
1 AAATTTCTAACTTTGTTT
11605385 CTGCTAGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.30, C:0.11, G:0.05, T:0.54
Consensus pattern (19 bp):
AAATTTCTAACTTTGTTTA
Found at i:11605504 original size:44 final size:44
Alignment explanation
Indices: 11605456--11605563 Score: 108
Period size: 44 Copynumber: 2.5 Consensus size: 44
11605446 ACAATTAAGC
** *** *
11605456 TATCATTGATTTACTATTATGTTGTTAATGATTTATTATTAAAT
1 TATCATTGATTTACTATTAAATTACCAATGATTTATTACTAAAT
* * * **
11605500 TATCAATGATATATTGCTAAATTACCAATGATTTATTACTAAAT
1 TATCATTGATTTACTATTAAATTACCAATGATTTATTACTAAAT
*
11605544 TAACATTGATTTACTATTAA
1 TATCATTGATTTACTATTAA
11605564 TTTATAAATA
Statistics
Matches: 47, Mismatches: 17, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.37, C:0.08, G:0.07, T:0.47
Consensus pattern (44 bp):
TATCATTGATTTACTATTAAATTACCAATGATTTATTACTAAAT
Found at i:11605507 original size:22 final size:22
Alignment explanation
Indices: 11605482--11605735 Score: 145
Period size: 22 Copynumber: 11.5 Consensus size: 22
11605472 TTATGTTGTT
* *
11605482 AATGATTTATTATTAAATTATC
1 AATGATTTACTACTAAATTATC
* * * *
11605504 AATGATATATTGCTAAATTACC
1 AATGATTTACTACTAAATTATC
* *
11605526 AATGATTTATTACTAAATTAAC
1 AATGATTTACTACTAAATTATC
* * * *
11605548 ATTGATTTACTATTAATTTATA
1 AATGATTTACTACTAAATTATC
* ** * *
11605570 AATAATTTACTGTTAAGTTATG
1 AATGATTTACTACTAAATTATC
* * * * *
11605592 ACTGATTTACCAATAAATTGTT
1 AATGATTTACTACTAAATTATC
* *
11605614 GATGATTTACTACTAACTTA-C
1 AATGATTTACTACTAAATTATC
* **
11605635 TAATTATTTGTTA-TAAAGTTAT-
1 -AATGATTTACTACTAAA-TTATC
* * * *
11605657 AATTGGTTTACTATTAATTTGTC
1 AA-TGATTTACTACTAAATTATC
* *
11605680 AATGATTTACTACAAAATTATT
1 AATGATTTACTACTAAATTATC
*
11605702 AATGATTTACTACAAAATTATC
1 AATGATTTACTACTAAATTATC
*
11605724 AATGATTAACTA
1 AATGATTTACTA
11605736 ATTTAATATT
Statistics
Matches: 174, Mismatches: 52, Indels: 12
0.73 0.22 0.05
Matches are distributed among these distances:
21 5 0.03
22 164 0.94
23 5 0.03
ACGTcount: A:0.39, C:0.09, G:0.08, T:0.44
Consensus pattern (22 bp):
AATGATTTACTACTAAATTATC
Found at i:11605578 original size:44 final size:44
Alignment explanation
Indices: 11605459--11605578 Score: 107
Period size: 44 Copynumber: 2.7 Consensus size: 44
11605449 ATTAAGCTAT
* * * *
11605459 CATTGATTTACTATT-ATGTTGTTAATGATTTATTATTAAATTAT
1 CATTGATTTACTATTAAT-TTATAAATGATTTATTACTAAATTAA
* * * ** * **
11605503 CAATGATATATTGCTAAATTACCAATGATTTATTACTAAATTAA
1 CATTGATTTACTATTAATTTATAAATGATTTATTACTAAATTAA
*
11605547 CATTGATTTACTATTAATTTATAAATAATTTA
1 CATTGATTTACTATTAATTTATAAATGATTTA
11605579 CTGTTAAGTT
Statistics
Matches: 55, Mismatches: 20, Indels: 2
0.71 0.26 0.03
Matches are distributed among these distances:
44 54 0.98
45 1 0.02
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.47
Consensus pattern (44 bp):
CATTGATTTACTATTAATTTATAAATGATTTATTACTAAATTAA
Found at i:11605840 original size:44 final size:44
Alignment explanation
Indices: 11605736--11605831 Score: 122
Period size: 44 Copynumber: 2.2 Consensus size: 44
11605726 TGATTAACTA
* * * * * *
11605736 ATTTAATATTAAATTATCACTAATTTATAACTAAGTTATTAGTG
1 ATTTACTACTAAATTATCAATAATTTACAACTAAATTATTAATG
11605780 ATTTACTACTAAATTATCAATAATTTACATA-TAAATTATTAATG
1 ATTTACTACTAAATTATCAATAATTTACA-ACTAAATTATTAATG
11605824 ATTTACTA
1 ATTTACTA
11605832 TTTTATTATT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
44 44 0.98
45 1 0.02
ACGTcount: A:0.43, C:0.08, G:0.04, T:0.45
Consensus pattern (44 bp):
ATTTACTACTAAATTATCAATAATTTACAACTAAATTATTAATG
Found at i:11605969 original size:21 final size:22
Alignment explanation
Indices: 11605945--11606236 Score: 105
Period size: 22 Copynumber: 13.2 Consensus size: 22
11605935 TCATTATCAT
11605945 ATTATCATTAATTTA-TATTAA
1 ATTATCATTAATTTACTATTAA
*
11605966 ATTATTCA-TGATTTACTATTAA
1 ATTA-TCATTAATTTACTATTAA
* * *
11605988 GTTATCATCAATTAACTATTAA
1 ATTATCATTAATTTACTATTAA
* *
11606010 ATTAT--TTATGATTAATTATTGCTAA
1 ATTATCATTA--ATTTACTA-T--TAA
* * *
11606035 GTTAT-ATTGATTTACTTTTAA
1 ATTATCATTAATTTACTATTAA
* * * * * *
11606056 GTTTTCAATGATTAAGTA-TAA
1 ATTATCATTAATTTACTATTAA
* *
11606077 ATTATCATTAATATACTATCAA
1 ATTATCATTAATTTACTATTAA
** * *
11606099 ATTATTTTTGATTTACTACTAA
1 ATTATCATTAATTTACTATTAA
* **
11606121 GTTTATCAATTAA-TTAAGATTAA
1 -ATTATC-ATTAATTTACTATTAA
** * *
11606144 ATTAAAATTGATTTACTTTTTAA
1 ATTATCATTAATTTAC-TATTAA
* *
11606167 ATTATCACTAATTTTCTATTAA
1 ATTATCATTAATTTACTATTAA
* ** *
11606189 ACTATCATTGGTTTATTATTAA
1 ATTATCATTAATTTACTATTAA
* * *
11606211 GTTATCAATT-ATTAACTACTAA
1 ATTATC-ATTAATTTACTATTAA
11606233 ATTA
1 ATTA
11606237 CCACTTTTTT
Statistics
Matches: 190, Mismatches: 65, Indels: 31
0.66 0.23 0.11
Matches are distributed among these distances:
20 2 0.01
21 38 0.20
22 102 0.54
23 31 0.16
24 8 0.04
25 7 0.04
26 2 0.01
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.48
Consensus pattern (22 bp):
ATTATCATTAATTTACTATTAA
Found at i:11605985 original size:22 final size:21
Alignment explanation
Indices: 11605736--11606236 Score: 98
Period size: 22 Copynumber: 22.8 Consensus size: 21
11605726 TGATTAACTA
* *
11605736 ATTTAATATTAAATTATCACTA
1 ATTTACTATTAAATTATCA-TG
* * *
11605758 ATTTA-TAACTAAGTTATTAGTG
1 ATTTACT-ATTAAATTATCA-TG
* *
11605780 ATTTACTACTAAATTATCAATA
1 ATTTACTATTAAATTATC-ATG
*
11605802 ATTTAC-ATATAAATTATTAATG
1 ATTTACTAT-TAAATTA-TCATG
** *
11605824 ATTTACTATTTTATTATTATG
1 ATTTACTATTAAATTATCATG
* * **
11605845 TATTTATTACTATGTTAT-ATTG
1 -ATTTACTATTAAATTATCA-TG
* * *
11605867 ATTTACTACTT-AGTTTTCAATT
1 ATTTACTA-TTAAATTATC-ATG
* *
11605889 ATTTACTATAAAATCATCATAG
1 ATTTACTATTAAATTATCAT-G
* ** *
11605911 ATTTATTCCTAAATTAACCATG
1 ATTTACTATTAAATT-ATCATG
* * * * * *
11605933 CTTCATTATCATATTATCATTA
1 ATTTACTATTAAATTATCA-TG
11605955 ATTTA-TATTAAATTATTCATG
1 ATTTACTATTAAATTA-TCATG
* *
11605976 ATTTACTATTAAGTTATCATCA
1 ATTTACTATTAAATTATCAT-G
* *
11605998 ATTAACTATTAAATTATTTATG
1 ATTTACTATTAAATTA-TCATG
* * *
11606020 ATTAATTATTGCTAAGTTAT-ATTG
1 ATTTACTA-T--TAAATTATCA-TG
* * *
11606044 ATTTACTTTTAAGTTTTCAATG
1 ATTTACTATTAAATTATC-ATG
* * *
11606066 ATTAAGTA-TAAATTATCATTA
1 ATTTACTATTAAATTATCA-TG
* * **
11606087 ATATACTATCAAATTATTTTTG
1 ATTTACTATTAAATTA-TCATG
* * *
11606109 ATTTACTACTAAGTTTATCAATT
1 ATTTACTATTAA-ATTATC-ATG
* ** **
11606132 AATTAAGATTAAATTAAAATTG
1 ATTTACTATTAAATTATCA-TG
* *
11606154 ATTTACTTTTTAAATTATCACTA
1 ATTTAC-TATTAAATTATCA-TG
* *
11606177 ATTTTCTATTAAACTATCATTG
1 ATTTACTATTAAATTATCA-TG
* * * *
11606199 GTTTATTATTAAGTTATCAATT
1 ATTTACTATTAAATTATC-ATG
* *
11606221 ATTAACTACTAAATTA
1 ATTTACTATTAAATTA
11606237 CCACTTTTTT
Statistics
Matches: 335, Mismatches: 111, Indels: 66
0.65 0.22 0.13
Matches are distributed among these distances:
20 1 0.00
21 63 0.19
22 211 0.63
23 46 0.14
24 8 0.02
25 6 0.02
ACGTcount: A:0.38, C:0.09, G:0.05, T:0.48
Consensus pattern (21 bp):
ATTTACTATTAAATTATCATG
Found at i:11606800 original size:22 final size:22
Alignment explanation
Indices: 11606775--11606864 Score: 85
Period size: 22 Copynumber: 4.1 Consensus size: 22
11606765 AATTTATTTT
*
11606775 TAAATTTTTAATAATTAACTAC
1 TAAATTTTTAATAATTTACTAC
* ** *
11606797 TAAATTATTAATTGTTTATTAC
1 TAAATTTTTAATAATTTACTAC
*
11606819 T-AATTTATAATTAATTTACTAC
1 TAAATTTTTAA-TAATTTACTAC
*
11606841 TAAGTTATTT-ATAATTTACTAC
1 TAAATT-TTTAATAATTTACTAC
11606863 TA
1 TA
11606865 TCAATTAATT
Statistics
Matches: 53, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
21 7 0.13
22 40 0.75
23 4 0.08
24 2 0.04
ACGTcount: A:0.40, C:0.08, G:0.02, T:0.50
Consensus pattern (22 bp):
TAAATTTTTAATAATTTACTAC
Found at i:11606864 original size:44 final size:43
Alignment explanation
Indices: 11606682--11606864 Score: 117
Period size: 44 Copynumber: 4.3 Consensus size: 43
11606672 ATTATCACTG
* * * *
11606682 ATTTATTACTAAATTATTTATAA-TTACTACCAAATTA-TTATTA
1 ATTTATTACTAATTTA-TAATAATTTACTACTAAGTTATTTA-TA
* * * *
11606725 ATTATATTA--AA-TTATGCATGATTTACTAGTAAGTTATAT-TA
1 ATT-TATTACTAATTTAT-AATAATTTACTACTAAGTTATTTATA
** * * * * *
11606766 ATTTATTTTTAAATTTTTAATAATTAACTACTAAATTATTAATT
1 ATTTATTACT-AATTTATAATAATTTACTACTAAGTTATTTATA
*
11606810 GTTTATTACTAATTTATAATTAATTTACTACTAAGTTATTTATA
1 ATTTATTACTAATTTATAA-TAATTTACTACTAAGTTATTTATA
*
11606854 ATTTACTACTA
1 ATTTATTACTA
11606865 TCAATTAATT
Statistics
Matches: 104, Mismatches: 26, Indels: 19
0.70 0.17 0.13
Matches are distributed among these distances:
40 5 0.05
41 11 0.11
42 13 0.12
43 30 0.29
44 45 0.43
ACGTcount: A:0.39, C:0.07, G:0.03, T:0.50
Consensus pattern (43 bp):
ATTTATTACTAATTTATAATAATTTACTACTAAGTTATTTATA
Found at i:11606918 original size:22 final size:22
Alignment explanation
Indices: 11606893--11607021 Score: 68
Period size: 22 Copynumber: 5.9 Consensus size: 22
11606883 ACTAAATTTG
*
11606893 ATTTGCTATTAAATTATTACTA
1 ATTTACTATTAAATTATTACTA
* * *
11606915 ATTTATTATTAAGTTATTATTA
1 ATTTACTATTAAATTATTACTA
* * *
11606937 ATTTAGTACTATAA-TGTTACGT-
1 ATTTACTATTA-AATTATTAC-TA
* * *
11606959 ATTTACAATTATAA-TATAATTA
1 ATTTACTATTA-AATTATTACTA
* *
11606981 ATTTACTATTAAAATATTA-TGC
1 ATTTACTATTAAATTATTACT-A
* *
11607003 ATTTATTATTATATTATTA
1 ATTTACTATTAAATTATTA
11607022 TGATTTATTA
Statistics
Matches: 81, Mismatches: 21, Indels: 10
0.72 0.19 0.09
Matches are distributed among these distances:
21 4 0.05
22 75 0.93
23 2 0.02
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.51
Consensus pattern (22 bp):
ATTTACTATTAAATTATTACTA
Found at i:11607022 original size:22 final size:21
Alignment explanation
Indices: 11606981--11607031 Score: 66
Period size: 22 Copynumber: 2.4 Consensus size: 21
11606971 AATATAATTA
*
11606981 ATTTACTATTAAAATATTATG
1 ATTTATTATTAAAATATTATG
* *
11607002 CATTTATTATTATATTATTATG
1 -ATTTATTATTAAAATATTATG
11607024 ATTTATTA
1 ATTTATTA
11607032 AAAATTATGA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 8 0.31
22 18 0.69
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.55
Consensus pattern (21 bp):
ATTTATTATTAAAATATTATG
Found at i:11607097 original size:22 final size:22
Alignment explanation
Indices: 11607044--11607097 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
11607034 AATTATGACC
*
11607044 ACTAAATTATCATTCATTTACT
1 ACTAAATTATCACTCATTTACT
* * *
11607066 ATTAAATTATCACTGATTTAGT
1 ACTAAATTATCACTCATTTACT
*
11607088 ACTAAGTTAT
1 ACTAAATTAT
11607098 TAATAATTAC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.37, C:0.13, G:0.06, T:0.44
Consensus pattern (22 bp):
ACTAAATTATCACTCATTTACT
Found at i:11607211 original size:3 final size:3
Alignment explanation
Indices: 11607203--11607234 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
11607193 TGCATATCAA
11607203 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
11607235 ATTATATAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:11609974 original size:2 final size:2
Alignment explanation
Indices: 11609929--11609957 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
11609919 TATTTGTGTG
11609929 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11609958 TATTGACACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11614844 original size:7 final size:7
Alignment explanation
Indices: 11614832--11614869 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
11614822 CATCTGGGCA
11614832 TTGTAAT
1 TTGTAAT
11614839 TTGTAAT
1 TTGTAAT
*
11614846 TTTTAAT
1 TTGTAAT
11614853 TTGTAAT
1 TTGTAAT
11614860 TTGTAAT
1 TTGTAAT
11614867 TTG
1 TTG
11614870 CATTTGTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.26, C:0.00, G:0.13, T:0.61
Consensus pattern (7 bp):
TTGTAAT
Found at i:11617756 original size:31 final size:32
Alignment explanation
Indices: 11617719--11617786 Score: 81
Period size: 30 Copynumber: 2.2 Consensus size: 32
11617709 AGTAAAACAT
* *
11617719 TAAAATTTTATATATT-TATCGTT-TTTT-ATA
1 TAAAAATTTATATATTATAAC-TTATTTTGATA
11617749 TAAAAA-TTATATATTATAACTTATTTTGATA
1 TAAAAATTTATATATTATAACTTATTTTGATA
11617780 TAAAAAT
1 TAAAAAT
11617787 ATAAATTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
29 11 0.34
30 12 0.38
31 9 0.28
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (32 bp):
TAAAAATTTATATATTATAACTTATTTTGATA
Found at i:11617800 original size:28 final size:31
Alignment explanation
Indices: 11617741--11617803 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
11617731 TATTTATCGT
* *
11617741 TTTTTATATAAAAATTATATATTATAACTTA
1 TTTTGATATAAAAATTATAAATTATAACTTA
11617772 TTTTGATATAAAAA-TATAAATTA-AA-TTA
1 TTTTGATATAAAAATTATAAATTATAACTTA
11617800 TTTT
1 TTTT
11617804 TTATTTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
28 7 0.23
29 2 0.07
30 8 0.27
31 13 0.43
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (31 bp):
TTTTGATATAAAAATTATAAATTATAACTTA
Found at i:11624192 original size:2 final size:2
Alignment explanation
Indices: 11624179--11624212 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
11624169 TATTTAATTT
* *
11624179 TA TA TT TA TA TA TA TA TG TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11624213 AATAAAATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (2 bp):
TA
Found at i:11624302 original size:24 final size:23
Alignment explanation
Indices: 11624253--11624322 Score: 61
Period size: 24 Copynumber: 3.0 Consensus size: 23
11624243 GATGTTAATT
* *
11624253 TAATAAAAATATTA-TATTTATAAA
1 TAAT-AAAATATTATTA-ATATTAA
11624277 TAACTAAAATATTATTAATATTAA
1 TAA-TAAAATATTATTAATATTAA
* * *
11624301 TAATAATATTTTATGAATATTA
1 TAATAAAATATTATTAATATTA
11624323 CATTAAATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
23 16 0.41
24 20 0.51
25 3 0.08
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (23 bp):
TAATAAAATATTATTAATATTAA
Found at i:11628905 original size:21 final size:21
Alignment explanation
Indices: 11628869--11628933 Score: 80
Period size: 21 Copynumber: 3.1 Consensus size: 21
11628859 TTCGACTTAA
11628869 TTTGATAACTTA-TAATATAAT
1 TTTGATAA-TTATTAATATAAT
*
11628890 TTTGGTAATTATTAATATAAT
1 TTTGATAATTATTAATATAAT
* *
11628911 TTTGATAATTGTT-ATAAAAT
1 TTTGATAATTATTAATATAAT
11628931 TTT
1 TTT
11628934 TAGTAACCTC
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
20 12 0.31
21 27 0.69
ACGTcount: A:0.38, C:0.02, G:0.08, T:0.52
Consensus pattern (21 bp):
TTTGATAATTATTAATATAAT
Found at i:11629007 original size:21 final size:21
Alignment explanation
Indices: 11628963--11629008 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
11628953 TTGTAGTAAT
* *
11628963 TTTTAGTAATTTTATGATATA
1 TTTTAGTAATTATATGATAAA
11628984 TTTTAGTAATTAT-TGATAAAA
1 TTTTAGTAATTATATGAT-AAA
11629005 TTTT
1 TTTT
11629009 GTATCATCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.57
Consensus pattern (21 bp):
TTTTAGTAATTATATGATAAA
Found at i:11629278 original size:22 final size:22
Alignment explanation
Indices: 11629256--11629332 Score: 73
Period size: 22 Copynumber: 3.5 Consensus size: 22
11629246 TTATTAATAA
11629256 TTAATAATTAAGTTATCATTAAT
1 TTAAT-ATTAAGTTATCATTAAT
** *
11629279 TTAATATTATTTTATCATTGAT
1 TTAATATTAAGTTATCATTAAT
* * *
11629301 TTACTATTAAGTCATCAATAAT
1 TTAATATTAAGTTATCATTAAT
* *
11629323 ATACTATTAA
1 TTAATATTAA
11629333 ATTAGTATTG
Statistics
Matches: 44, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
22 39 0.89
23 5 0.11
ACGTcount: A:0.40, C:0.08, G:0.04, T:0.48
Consensus pattern (22 bp):
TTAATATTAAGTTATCATTAAT
Found at i:11629371 original size:22 final size:22
Alignment explanation
Indices: 11629346--11629491 Score: 98
Period size: 22 Copynumber: 6.6 Consensus size: 22
11629336 AGTATTGAAG
* * *
11629346 TACTACTAATTTATAAATAATT
1 TACTATTAAATTATTAATAATT
* * *
11629368 TACTATTAAGTTATGAATTATT
1 TACTATTAAATTATTAATAATT
* * *
11629390 TACCAATAAATTATTAATGATT
1 TACTATTAAATTATTAATAATT
*
11629412 TACTATTAAATTATTGATAATT
1 TACTATTAAATTATTAATAATT
* * *
11629434 TATTA-TAAAGTTA-CAACTGATT
1 TACTATTAAA-TTATTAA-TAATT
** * *
11629456 TTTTATTAATTTGTTAATAATT
1 TACTATTAAATTATTAATAATT
*
11629478 TACTATAAAATTAT
1 TACTATTAAATTAT
11629492 CAACAATTAA
Statistics
Matches: 93, Mismatches: 27, Indels: 8
0.73 0.21 0.06
Matches are distributed among these distances:
21 5 0.05
22 83 0.89
23 5 0.05
ACGTcount: A:0.41, C:0.06, G:0.05, T:0.48
Consensus pattern (22 bp):
TACTATTAAATTATTAATAATT
Found at i:11629416 original size:66 final size:66
Alignment explanation
Indices: 11629299--11629446 Score: 152
Period size: 66 Copynumber: 2.2 Consensus size: 66
11629289 TTTATCATTG
* * * * *
11629299 ATTTACTATTAAGTCATCAATAATATACTATTAAATTAGTATTGAAGTACTACTAATTTATAAAT
1 ATTTACTATTAAGTTATCAATAATATACCAATAAATTAGTAATGAAGTACTACTAAATTATAAAT
11629364 A
66 A
* * * * ** * **
11629365 ATTTACTATTAAGTTATGAATTATTTACCAATAAATTATTAATGATTTACTATTAAATTATTGAT
1 ATTTACTATTAAGTTATCAATAATATACCAATAAATTAGTAATGAAGTACTACTAAATTATAAAT
11629430 A
66 A
* *
11629431 ATTTATTATAAAGTTA
1 ATTTACTATTAAGTTA
11629447 CAACTGATTT
Statistics
Matches: 66, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.43, C:0.07, G:0.06, T:0.45
Consensus pattern (66 bp):
ATTTACTATTAAGTTATCAATAATATACCAATAAATTAGTAATGAAGTACTACTAAATTATAAAT
A
Found at i:11629455 original size:44 final size:45
Alignment explanation
Indices: 11629365--11629495 Score: 124
Period size: 44 Copynumber: 3.0 Consensus size: 45
11629355 TTTATAAATA
* * * * *
11629365 ATTTACTATTAAGTTATGAATTATTTACCA-ATAAATTATTAA-TG
1 ATTTACTATTAAATTATTAATAATTTACTATA-AAATTATCAACTG
* * *
11629409 ATTTACTATTAAATTATTGATAATTTATTATAAAGTTA-CAACTG
1 ATTTACTATTAAATTATTAATAATTTACTATAAAATTATCAACTG
** * *
11629453 ATTTTTTATTAATTTGTTAATAATTTACTATAAAATTATCAAC
1 ATTTACTATTAAATTATTAATAATTTACTATAAAATTATCAAC
11629496 AATTAACTAA
Statistics
Matches: 69, Mismatches: 15, Indels: 5
0.78 0.17 0.06
Matches are distributed among these distances:
43 2 0.03
44 62 0.90
45 5 0.07
ACGTcount: A:0.40, C:0.07, G:0.05, T:0.47
Consensus pattern (45 bp):
ATTTACTATTAAATTATTAATAATTTACTATAAAATTATCAACTG
Found at i:11629619 original size:22 final size:22
Alignment explanation
Indices: 11629558--11629622 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
11629548 GATTTGCAAT
* * *
11629558 TAAGTTATCACTAGTTTAGTAC
1 TAAGTTATTATTAGTTTACTAC
*
11629580 TATA-TTATTATGCA-TTTACTAC
1 TA-AGTTATTAT-TAGTTTACTAC
11629602 TAAGTTATTATTAGTTTACTA
1 TAAGTTATTATTAGTTTACTA
11629623 TTTCGTTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.32, C:0.11, G:0.09, T:0.48
Consensus pattern (22 bp):
TAAGTTATTATTAGTTTACTAC
Found at i:11630797 original size:26 final size:26
Alignment explanation
Indices: 11630763--11630812 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
11630753 TTTTAAAATT
11630763 GTTTTATAA-TTTTTAAAATATTTTG
1 GTTTTATAAGTTTTTAAAATATTTTG
*
11630788 GTTTTCATAAGTTTTTGAAATATTT
1 GTTTT-ATAAGTTTTTAAAATATTT
11630813 AAAATTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 5 0.23
26 4 0.18
27 13 0.59
ACGTcount: A:0.30, C:0.02, G:0.10, T:0.58
Consensus pattern (26 bp):
GTTTTATAAGTTTTTAAAATATTTTG
Found at i:11631811 original size:22 final size:19
Alignment explanation
Indices: 11631797--11631859 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 19
11631787 TTTAAAACTC
11631797 TTATTTTTTATATTTTAAAA
1 TTATTTTTTATA-TTTAAAA
***
11631817 TTATTTTTTATGATTT-TTT
1 TTATTTTTTAT-ATTTAAAA
*
11631836 TTATTTTTTGATATTAAAAA
1 TTATTTTTT-ATATTTAAAA
11631856 TTAT
1 TTAT
11631860 AGAACTTTAA
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
19 12 0.36
20 20 0.61
21 1 0.03
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (19 bp):
TTATTTTTTATATTTAAAA
Found at i:11633074 original size:31 final size:32
Alignment explanation
Indices: 11633039--11633098 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 32
11633029 AACTTACTAT
* *
11633039 ATTATATATATATAATATTCT-TTTTTATATA
1 ATTATAGATATATAATATTATGTTTTTATATA
* *
11633070 ATTATAGATGTATAGTATTATGTTTTTAT
1 ATTATAGATATATAATATTATGTTTTTAT
11633099 TGTTTTTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 17 0.71
32 7 0.29
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.57
Consensus pattern (32 bp):
ATTATAGATATATAATATTATGTTTTTATATA
Found at i:11633607 original size:30 final size:30
Alignment explanation
Indices: 11633571--11633666 Score: 108
Period size: 30 Copynumber: 3.2 Consensus size: 30
11633561 AAATTAAAAG
11633571 TTATTTAGATACAAATTAAAAGATAAAT-AT
1 TTATTTAGATACAAATT-AAAGATAAATGAT
* *
11633601 TTATTTAGATACAAATTAAAGTTTAATGAT
1 TTATTTAGATACAAATTAAAGATAAATGAT
* * *
11633631 TTATTTAAATAC-AATAAAAG-TATATGAGT
1 TTATTTAGATACAAATTAAAGATAAATGA-T
11633660 TTATTTA
1 TTATTTA
11633667 ACTAAAAGAG
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
28 5 0.09
29 23 0.40
30 30 0.52
ACGTcount: A:0.47, C:0.03, G:0.08, T:0.42
Consensus pattern (30 bp):
TTATTTAGATACAAATTAAAGATAAATGAT
Found at i:11634471 original size:23 final size:24
Alignment explanation
Indices: 11634444--11634491 Score: 80
Period size: 23 Copynumber: 2.0 Consensus size: 24
11634434 ATCAAAATAG
*
11634444 TAAAATTTAAAATTT-TTTAATTT
1 TAAAATTTAAAATTTAATTAATTT
11634467 TAAAATTTAAAATTTAATTAATTT
1 TAAAATTTAAAATTTAATTAATTT
11634491 T
1 T
11634492 TTATATATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 15 0.65
24 8 0.35
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (24 bp):
TAAAATTTAAAATTTAATTAATTT
Found at i:11637321 original size:7 final size:7
Alignment explanation
Indices: 11637311--11637348 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
11637301 CATCTGGGCA
11637311 TTGTAAT
1 TTGTAAT
11637318 TTGTAAT
1 TTGTAAT
*
11637325 TTTTAAT
1 TTGTAAT
11637332 TTGTAAT
1 TTGTAAT
11637339 TTGTAAT
1 TTGTAAT
11637346 TTG
1 TTG
11637349 CATTTGTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.26, C:0.00, G:0.13, T:0.61
Consensus pattern (7 bp):
TTGTAAT
Found at i:11640274 original size:29 final size:31
Alignment explanation
Indices: 11640214--11640277 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
11640204 ATATTTATCG
* * *
11640214 TTTTTATATAAAAATTATATATTATAACTTA
1 TTTTGATATAAAAAATATAAATTATAACTTA
11640245 TTTTGATATAAAAAATATAAATTA-AA-TTA
1 TTTTGATATAAAAAATATAAATTATAACTTA
11640274 TTTT
1 TTTT
11640278 TTATTTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 7 0.23
30 2 0.07
31 21 0.70
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (31 bp):
TTTTGATATAAAAAATATAAATTATAACTTA
Found at i:11646645 original size:2 final size:2
Alignment explanation
Indices: 11646633--11646667 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
11646623 TATTTAATTT
*
11646633 TA TA T- TA TA TA TA TA TA TG TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11646668 AATAAAATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:11651340 original size:21 final size:21
Alignment explanation
Indices: 11651251--11651365 Score: 85
Period size: 21 Copynumber: 5.5 Consensus size: 21
11651241 TATAATTTTG
* *
11651251 ATTTTGATAGCGTT-TAATAAA
1 ATTTTGATAAC-TTATAATATA
* * * *
11651272 ATTTTGGTAACCTATGATACA
1 ATTTTGATAACTTATAATATA
**
11651293 ATTTTGATAACATTCGACAT-TA
1 ATTTTGATAAC-TTATA-ATATA
11651315 A-TTTGATAACTTATAATATA
1 ATTTTGATAACTTATAATATA
*
11651335 ATTTTGGTAA-TTATTAATATA
1 ATTTTGATAACTTA-TAATATA
11651356 ATTTTGATAA
1 ATTTTGATAA
11651366 TTGTTTATAA
Statistics
Matches: 73, Mismatches: 15, Indels: 12
0.73 0.15 0.12
Matches are distributed among these distances:
19 2 0.03
20 10 0.14
21 56 0.77
22 3 0.04
23 2 0.03
ACGTcount: A:0.38, C:0.07, G:0.10, T:0.44
Consensus pattern (21 bp):
ATTTTGATAACTTATAATATA
Found at i:11651366 original size:21 final size:21
Alignment explanation
Indices: 11651316--11651381 Score: 80
Period size: 21 Copynumber: 3.1 Consensus size: 21
11651306 TCGACATTAA
11651316 TTTGATAACTTA-TAATATAAT
1 TTTGATAA-TTATTAATATAAT
*
11651337 TTTGGTAATTATTAATATAAT
1 TTTGATAATTATTAATATAAT
* * *
11651358 TTTGATAATTGTTTATAAAAT
1 TTTGATAATTATTAATATAAT
11651379 TTT
1 TTT
11651382 AGTAACCTCT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
20 3 0.08
21 36 0.92
ACGTcount: A:0.38, C:0.02, G:0.08, T:0.53
Consensus pattern (21 bp):
TTTGATAATTATTAATATAAT
Found at i:11651442 original size:20 final size:21
Alignment explanation
Indices: 11651408--11651447 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
11651398 AATTGTAGTA
11651408 ATTTTTGTAATTTA-TGATAT
1 ATTTTTGTAATTTATTGATAT
11651428 ATTTTTAGTAA-TTATTGATA
1 ATTTTT-GTAATTTATTGATA
11651448 AAATTTGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (21 bp):
ATTTTTGTAATTTATTGATAT
Found at i:11651732 original size:22 final size:23
Alignment explanation
Indices: 11651701--11651748 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
11651691 TTATTAATAA
11651701 TTAATAATTAAGTTATCATCGAT
1 TTAATAATTAAGTTATCATCGAT
** *
11651724 TTAAT-ATTATTTTATCATTGAT
1 TTAATAATTAAGTTATCATCGAT
11651746 TTA
1 TTA
11651749 CTACTAAGCC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.52
Consensus pattern (23 bp):
TTAATAATTAAGTTATCATCGAT
Found at i:11651826 original size:22 final size:21
Alignment explanation
Indices: 11651801--11651944 Score: 83
Period size: 22 Copynumber: 6.6 Consensus size: 21
11651791 TACTACTAAT
* *
11651801 TTATAAATAATTTAGTATTAAG
1 TTATTAATAATTTA-TATTAAA
* * *
11651823 TTATGAATTATTTATCAATAAA
1 TTATTAATAATTTAT-ATTAAA
*
11651845 TTATTAATGATTTACTATTAAA
1 TTATTAATAATTTA-TATTAAA
* *
11651867 TTATTGATAATTTATTATGAAA
1 TTATTAATAATTTA-TATTAAA
* * * *
11651889 TTA-CAACTGATTTTTTATTAAT
1 TTATTAA-T-AATTTATATTAAA
* *
11651911 TTGTTAATAATTTACTATAAAA
1 TTATTAATAATTTA-TATTAAA
*
11651933 TTATCAATAATT
1 TTATTAATAATT
11651945 AACTAATTTA
Statistics
Matches: 91, Mismatches: 25, Indels: 12
0.71 0.20 0.09
Matches are distributed among these distances:
21 6 0.07
22 78 0.86
23 7 0.08
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.49
Consensus pattern (21 bp):
TTATTAATAATTTATATTAAA
Found at i:11651890 original size:44 final size:45
Alignment explanation
Indices: 11651810--11651939 Score: 113
Period size: 44 Copynumber: 2.9 Consensus size: 45
11651800 TTTATAAATA
* * * * * *
11651810 ATTTAGTATTAAGTTATGAATTATTTATCAAT-AAATTATTAA-TG
1 ATTTACTATTAAATTATTAATAATTTA-CTATAAAATTATCAACTG
* * *
11651854 ATTTACTATTAAATTATTGATAATTTATTATGAAATTA-CAACTG
1 ATTTACTATTAAATTATTAATAATTTACTATAAAATTATCAACTG
** * *
11651898 ATTTTTTATTAATTTGTTAATAATTTACTATAAAATTATCAA
1 ATTTACTATTAAATTATTAATAATTTACTATAAAATTATCAA
11651940 TAATTAACTA
Statistics
Matches: 68, Mismatches: 15, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
43 4 0.06
44 61 0.90
45 3 0.04
ACGTcount: A:0.41, C:0.05, G:0.06, T:0.48
Consensus pattern (45 bp):
ATTTACTATTAAATTATTAATAATTTACTATAAAATTATCAACTG
Found at i:11651952 original size:30 final size:29
Alignment explanation
Indices: 11651914--11651979 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 29
11651904 TATTAATTTG
*
11651914 TTAATAATTTACTATAAAATTATCAATAA
1 TTAATAATTTACTACAAAATTATCAATAA
* *
11651943 TTAACTAATTTATTACAAAATTATCACTAA
1 TTAA-TAATTTACTACAAAATTATCAATAA
*
11651973 TTTATAA
1 TTAATAA
11651980 GTAAATTAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 7 0.22
30 25 0.78
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.42
Consensus pattern (29 bp):
TTAATAATTTACTACAAAATTATCAATAA
Found at i:11651957 original size:22 final size:21
Alignment explanation
Indices: 11651932--11651977 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
11651922 TTACTATAAA
11651932 ATTATCAATAATTA-ACTAATTT
1 ATTA-CAA-AATTACACTAATTT
11651954 ATTACAAAATTATCACTAATTT
1 ATTACAAAATTA-CACTAATTT
11651976 AT
1 AT
11651978 AAGTAAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 5 0.23
21 3 0.14
22 14 0.64
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (21 bp):
ATTACAAAATTACACTAATTT
Found at i:11651985 original size:22 final size:22
Alignment explanation
Indices: 11651946--11652014 Score: 86
Period size: 22 Copynumber: 3.1 Consensus size: 22
11651936 TCAATAATTA
* *
11651946 ACTAATTTATTACAAAATTATC
1 ACTAATTTATAACTAAATTATC
*
11651968 ACTAATTTATAAGTAAATTAGT-
1 ACTAATTTATAACTAAATTA-TC
*
11651990 ACTGATTTATAACTAAATTATC
1 ACTAATTTATAACTAAATTATC
11652012 ACT
1 ACT
11652015 GGTTTAGTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
21 1 0.03
22 38 0.95
23 1 0.03
ACGTcount: A:0.43, C:0.12, G:0.04, T:0.41
Consensus pattern (22 bp):
ACTAATTTATAACTAAATTATC
Found at i:11652769 original size:39 final size:41
Alignment explanation
Indices: 11652724--11652809 Score: 101
Period size: 37 Copynumber: 2.2 Consensus size: 41
11652714 GTTTTTCTAA
*
11652724 ATTTTTAAAAAGTATTCTTAAA-ATTTTTTAAAATTTT-A-T
1 ATTTTTAAAAAGTAAT-TTAAATATTTTTTAAAATTTTCAGT
* *
11652763 ATTTTT--AATGTAATTTAAATTTTTTTTAAAATTTTCAGT
1 ATTTTTAAAAAGTAATTTAAATATTTTTTAAAATTTTCAGT
11652802 ATTTTTAA
1 ATTTTTAA
11652810 TTTTTGTGAA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
36 5 0.13
37 20 0.51
38 1 0.03
39 13 0.33
ACGTcount: A:0.37, C:0.02, G:0.03, T:0.57
Consensus pattern (41 bp):
ATTTTTAAAAAGTAATTTAAATATTTTTTAAAATTTTCAGT
Found at i:11652932 original size:16 final size:17
Alignment explanation
Indices: 11652911--11652948 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
11652901 TTGTATTAAA
11652911 TTTTTAAGATTTTAG-T
1 TTTTTAAGATTTTAGAT
**
11652927 TTTTTAATTTTTTAGAT
1 TTTTTAAGATTTTAGAT
11652944 TTTTT
1 TTTTT
11652949 TTAATTTGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.71
Consensus pattern (17 bp):
TTTTTAAGATTTTAGAT
Found at i:11652965 original size:18 final size:19
Alignment explanation
Indices: 11652926--11652966 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
11652916 AAGATTTTAG
*
11652926 TTTTTTAATTTTTTAGATT
1 TTTTTTAATTTTGTAGATT
11652945 TTTTTTAA-TTTGTAGGATT
1 TTTTTTAATTTTGTA-GATT
11652964 TTT
1 TTT
11652967 CTTATTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.20, C:0.00, G:0.10, T:0.71
Consensus pattern (19 bp):
TTTTTTAATTTTGTAGATT
Found at i:11653233 original size:26 final size:26
Alignment explanation
Indices: 11653199--11653248 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
11653189 TTTTAAAATT
11653199 GTTTTATAA-TTTTTAAAATATTTTG
1 GTTTTATAAGTTTTTAAAATATTTTG
*
11653224 GTTTTCATAAGTTTTTGAAATATTT
1 GTTTT-ATAAGTTTTTAAAATATTT
11653249 AAAAATTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 5 0.23
26 4 0.18
27 13 0.59
ACGTcount: A:0.30, C:0.02, G:0.10, T:0.58
Consensus pattern (26 bp):
GTTTTATAAGTTTTTAAAATATTTTG
Found at i:11653266 original size:18 final size:19
Alignment explanation
Indices: 11653235--11653271 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
11653225 TTTTCATAAG
11653235 TTTTTGAAATATTTAAAAA
1 TTTTTGAAATATTTAAAAA
*
11653254 TTTTTTAAA-ATTTAAAAA
1 TTTTTGAAATATTTAAAAA
11653272 AGATTAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (19 bp):
TTTTTGAAATATTTAAAAA
Found at i:11654229 original size:22 final size:19
Alignment explanation
Indices: 11654215--11654276 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 19
11654205 TTTAAAACTC
11654215 TTATTTTTTATATTTTAAAA
1 TTATTTTTTATA-TTTAAAA
**
11654235 TTATTTTTTATGATTT--TT
1 TTATTTTTTAT-ATTTAAAA
*
11654253 TTATTTTTTGATATTAAAAA
1 TTATTTTTT-ATATTTAAAA
11654273 TTAT
1 TTAT
11654277 AGAACTTTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
18 12 0.36
19 2 0.06
20 18 0.55
21 1 0.03
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (19 bp):
TTATTTTTTATATTTAAAA
Found at i:11656017 original size:30 final size:30
Alignment explanation
Indices: 11655981--11656076 Score: 108
Period size: 30 Copynumber: 3.2 Consensus size: 30
11655971 AAATTAAAAG
11655981 TTATTTAGATACAAATTAAAAGATAAAT-AT
1 TTATTTAGATACAAATT-AAAGATAAATGAT
* *
11656011 TTATTTAGATACAAATTAAAGTTTAATGAT
1 TTATTTAGATACAAATTAAAGATAAATGAT
* * *
11656041 TTATTTAAATAC-AATAAAAG-TATATGAGT
1 TTATTTAGATACAAATTAAAGATAAATGA-T
11656070 TTATTTA
1 TTATTTA
11656077 ACTAAAAGAG
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
28 5 0.09
29 23 0.40
30 30 0.52
ACGTcount: A:0.47, C:0.03, G:0.08, T:0.42
Consensus pattern (30 bp):
TTATTTAGATACAAATTAAAGATAAATGAT
Found at i:11663755 original size:89 final size:90
Alignment explanation
Indices: 11663601--11663767 Score: 236
Period size: 89 Copynumber: 1.9 Consensus size: 90
11663591 TGGAACAAAG
*
11663601 TAAGCCTTATATTCCCCATAAACTCTGGGCAGGTGTTGGCCCATAATATTGGAACAAACTAAGCC
1 TAAGCCTTATATTCCCCATAAACTCTGGGCAGGTGTTGGCCCATAATATGGGAACAAACTAAGCC
11663666 TTTATATCTCCATAACTGTTTCCATAC
66 -TTATATC-CCATAACTGTTTCCATAC
**
11663693 TAAGCCTT-TATAT-CCCAT-AACTCTGGGCAGGTG-T-GCTTTATAATATGGGAACAAACTAAG
1 TAAGCCTTATAT-TCCCCATAAACTCTGGGCAGGTGTTGGC-CCATAATATGGGAACAAACTAAG
11663753 CCTTATATCCCATAA
64 CCTTATATCCCATAA
11663768 ACTCTGGGTT
Statistics
Matches: 70, Mismatches: 3, Indels: 9
0.85 0.04 0.11
Matches are distributed among these distances:
87 6 0.09
88 9 0.13
89 23 0.33
90 15 0.21
91 8 0.11
92 9 0.13
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (90 bp):
TAAGCCTTATATTCCCCATAAACTCTGGGCAGGTGTTGGCCCATAATATGGGAACAAACTAAGCC
TTATATCCCATAACTGTTTCCATAC
Found at i:11669652 original size:44 final size:44
Alignment explanation
Indices: 11669583--11669670 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 44
11669573 GATGATGGTT
11669583 TGGTTATTTAGATTAATACACAACATTAC-AGGTTTTGAAAAGTC
1 TGGTTATTTAGATTAATACACAACATT-CTAGGTTTTGAAAAGTC
** *
11669627 TGGTTATTTAGATTAATGTATAACATTCTAGGTTTTGAAAAGTC
1 TGGTTATTTAGATTAATACACAACATTCTAGGTTTTGAAAAGTC
11669671 AATCTAATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
43 1 0.03
44 39 0.98
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (44 bp):
TGGTTATTTAGATTAATACACAACATTCTAGGTTTTGAAAAGTC
Found at i:11669787 original size:21 final size:21
Alignment explanation
Indices: 11669763--11669807 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
11669753 TTGTTTTAGT
*
11669763 TTTTAAAT-TATTTTAATATAA
1 TTTTAAATATATTTAAATA-AA
*
11669784 TTTTTAATATATTTAAATAAA
1 TTTTAAATATATTTAAATAAA
11669805 TTT
1 TTT
11669808 AGATATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
TTTTAAATATATTTAAATAAA
Found at i:11669790 original size:22 final size:21
Alignment explanation
Indices: 11669762--11669807 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
11669752 TTTGTTTTAG
*
11669762 TTTTTAA-ATTATTTTAATATAA
1 TTTTTAATA-TATTTAAATA-AA
11669784 TTTTTAATATATTTAAATAAA
1 TTTTTAATATATTTAAATAAA
11669805 TTT
1 TTT
11669808 AGATATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 5 0.23
22 16 0.73
23 1 0.05
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TTTTTAATATATTTAAATAAA
Found at i:11669867 original size:18 final size:17
Alignment explanation
Indices: 11669833--11669871 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
11669823 ATTTTTATTT
**
11669833 TATAAAAATTTAAAAAA
1 TATAAAAAACTAAAAAA
11669850 TATAAAAAACTAATAAAA
1 TATAAAAAACTAA-AAAA
11669868 TATA
1 TATA
11669872 TAATAAAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (17 bp):
TATAAAAAACTAAAAAA
Found at i:11673595 original size:2 final size:2
Alignment explanation
Indices: 11673588--11673615 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
11673578 TCTGTTTAAG
11673588 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11673616 TATTGGGGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11680440 original size:18 final size:17
Alignment explanation
Indices: 11680419--11680480 Score: 72
Period size: 16 Copynumber: 3.5 Consensus size: 17
11680409 CGCTTTACAT
11680419 TTAAAAAATATTAAAATA
1 TTAAAAAA-ATTAAAATA
*
11680437 TTAAAAACATT-AAATA
1 TTAAAAAAATTAAAATA
*
11680453 TTAAAAAAATTACAAAAA
1 TTAAAAAAATTA-AAATA
11680471 TTACAAAAAA
1 TTA-AAAAAA
11680481 AAAGGTAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
16 15 0.39
17 3 0.08
18 14 0.37
19 6 0.16
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAAAAAATTAAAATA
Found at i:11680443 original size:9 final size:9
Alignment explanation
Indices: 11680422--11680478 Score: 50
Period size: 9 Copynumber: 6.6 Consensus size: 9
11680412 TTTACATTTA
11680422 AAAAATATT
1 AAAAATATT
11680431 -AAAATATT
1 AAAAATATT
*
11680439 AAAAACATT
1 AAAAATATT
11680448 --AAATATT
1 AAAAATATT
*
11680455 AAAAAAATT
1 AAAAATATT
11680464 ACAAAA-ATT
1 A-AAAATATT
11680473 ACAAAA
1 A-AAAA
11680479 AAAAAGGTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
7 6 0.15
8 8 0.20
9 23 0.56
10 4 0.10
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.26
Consensus pattern (9 bp):
AAAAATATT
Found at i:11686783 original size:2 final size:2
Alignment explanation
Indices: 11686776--11686832 Score: 78
Period size: 2 Copynumber: 28.5 Consensus size: 2
11686766 ACTTGCCGAA
* * * *
11686776 AT AT AT AT AT AT AG AT GT GT GT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11686818 AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT A
11686833 AAAGATAAAC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.47
Consensus pattern (2 bp):
AT
Found at i:11688141 original size:41 final size:41
Alignment explanation
Indices: 11688070--11688148 Score: 99
Period size: 41 Copynumber: 1.9 Consensus size: 41
11688060 AAATATTTTT
* *
11688070 ATTATTTATTTAATTTTATATTTTATATATTATATTAATAA
1 ATTATTTATTTAATTTTATATTTAAGATATTATATTAATAA
*
11688111 ATTA-TTATTTAATATCTTA-ATTTAAGATATTATCTTAA
1 ATTATTTATTTAAT-T-TTATATTTAAGATATTATATTAA
11688149 GAAAAATTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 9 0.27
41 21 0.64
42 3 0.09
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (41 bp):
ATTATTTATTTAATTTTATATTTAAGATATTATATTAATAA
Found at i:11688158 original size:40 final size:40
Alignment explanation
Indices: 11688075--11688158 Score: 91
Period size: 41 Copynumber: 2.1 Consensus size: 40
11688065 TTTTTATTAT
* * * *
11688075 TTATTTAATTTTATATTTTATATATTATATTAATAAATTA
1 TTATTTAATTTTATATTTAAGATATTATATTAAGAAATAA
*
11688115 TTATTTAATATCTTA-ATTTAAGATATTATCTTAAGAAA-AA
1 TTATTTAAT-T-TTATATTTAAGATATTATATTAAGAAATAA
11688155 TTAT
1 TTAT
11688159 ATCTTACTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
40 14 0.38
41 20 0.54
42 3 0.08
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (40 bp):
TTATTTAATTTTATATTTAAGATATTATATTAAGAAATAA
Found at i:11689214 original size:19 final size:22
Alignment explanation
Indices: 11689179--11689250 Score: 66
Period size: 19 Copynumber: 3.5 Consensus size: 22
11689169 TTTAATTTAG
*
11689179 TATTATATT-CATA-AAATAT-
1 TATTTTATTACATATAAATATA
11689198 TATTTT-TTA-ATATAAAT-TA
1 TATTTTATTACATATAAATATA
11689217 TATTTTAATTACATATAAATATAA
1 TATTTT-ATTACATATAAATAT-A
*
11689241 TATTTCATTA
1 TATTTTATTA
11689251 AATTAAGATA
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
18 6 0.14
19 15 0.35
21 3 0.07
22 8 0.19
23 5 0.12
24 6 0.14
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.51
Consensus pattern (22 bp):
TATTTTATTACATATAAATATA
Found at i:11690214 original size:35 final size:34
Alignment explanation
Indices: 11690168--11690234 Score: 98
Period size: 35 Copynumber: 1.9 Consensus size: 34
11690158 TTCATCGTAT
*
11690168 TTATAAAATTTTTTTATCATAATTGATTAAAATTA
1 TTATAAAATTTTTTTATCATAATT-ATGAAAATTA
* *
11690203 TTATAATATTTTTTTATTATAATTATGAAAAT
1 TTATAAAATTTTTTTATCATAATTATGAAAAT
11690235 ATCTCTTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 7 0.24
35 22 0.76
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (34 bp):
TTATAAAATTTTTTTATCATAATTATGAAAATTA
Found at i:11690235 original size:25 final size:26
Alignment explanation
Indices: 11690193--11690245 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 26
11690183 ATCATAATTG
* * *
11690193 ATTAAAATTATTATAATAT-TTTTTT
1 ATTAAAATTATGAAAATATCTCTTTT
*
11690218 ATTATAATTATGAAAATATCTCTTTT
1 ATTAAAATTATGAAAATATCTCTTTT
11690244 AT
1 AT
11690246 CGTAATATAC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.55
Consensus pattern (26 bp):
ATTAAAATTATGAAAATATCTCTTTT
Found at i:11690881 original size:26 final size:26
Alignment explanation
Indices: 11690838--11690898 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
11690828 ACCATGATTG
* * *
11690838 ACCACAATTACTATAATGCCTCTCTT
1 ACCATAATTACGAGAATGCCTCTCTT
*
11690864 ACGATAATTACGAGAATGCCTCTCTT
1 ACCATAATTACGAGAATGCCTCTCTT
11690890 ACCATAATT
1 ACCATAATT
11690899 CTTCAAAATT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.33, C:0.26, G:0.08, T:0.33
Consensus pattern (26 bp):
ACCATAATTACGAGAATGCCTCTCTT
Found at i:11692605 original size:21 final size:20
Alignment explanation
Indices: 11692566--11692610 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
11692556 CATTGATTTT
* *
11692566 AATCTCATTGTTAAGTAACC
1 AATCTCACTGCTAAGTAACC
*
11692586 AATCTCACTGCTACAGTAACT
1 AATCTCACTGCTA-AGTAACC
11692607 AATC
1 AATC
11692611 ACACGTCTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.36, C:0.24, G:0.09, T:0.31
Consensus pattern (20 bp):
AATCTCACTGCTAAGTAACC
Found at i:11695029 original size:17 final size:18
Alignment explanation
Indices: 11694987--11695069 Score: 87
Period size: 18 Copynumber: 4.6 Consensus size: 18
11694977 TCAACATTAG
* *
11694987 AAAAAACTTTAAAAATTT
1 AAAAAAATTAAAAAATTT
11695005 CAAAAAAATTAAAAAATTT
1 -AAAAAAATTAAAAAATTT
* *
11695024 AGAAAAATAAAAAAATTT
1 AAAAAAATTAAAAAATTT
*
11695042 -AAAAAATATAAAAAATTG
1 AAAAAAAT-TAAAAAATTT
*
11695060 ATAAAAATTA
1 AAAAAAATTA
11695070 CTAAAATTTT
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
17 6 0.11
18 26 0.48
19 22 0.41
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (18 bp):
AAAAAAATTAAAAAATTT
Found at i:11695057 original size:9 final size:9
Alignment explanation
Indices: 11695007--11695057 Score: 61
Period size: 9 Copynumber: 5.8 Consensus size: 9
11694997 AAAAATTTCA
11695007 AAAAAAT-T
1 AAAAAATAT
*
11695015 AAAAAATTT
1 AAAAAATAT
11695024 AGAAAAATA-
1 A-AAAAATAT
*
11695033 AAAAAATTT
1 AAAAAATAT
11695042 AAAAAATAT
1 AAAAAATAT
11695051 AAAAAAT
1 AAAAAAT
11695058 TGATAAAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
8 13 0.35
9 18 0.49
10 6 0.16
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.24
Consensus pattern (9 bp):
AAAAAATAT
Found at i:11695063 original size:11 final size:10
Alignment explanation
Indices: 11694997--11695075 Score: 57
Period size: 9 Copynumber: 8.3 Consensus size: 10
11694987 AAAAAACTTT
11694997 AAAAATT-TCA
1 AAAAATTAT-A
*
11695007 AAAAAAT-TA
1 AAAAATTATA
11695016 AAAAATT-TA
1 AAAAATTATA
11695025 GAAAAA-TA-A
1 -AAAAATTATA
11695034 AAAAATT-TA
1 AAAAATTATA
11695043 AAAAA-TATA
1 AAAAATTATA
11695052 AAAAATTGAT-
1 AAAAATT-ATA
11695062 AAAAATTACTA
1 AAAAATTA-TA
11695073 AAA
1 AAA
11695076 TTTTTTTAAA
Statistics
Matches: 58, Mismatches: 2, Indels: 17
0.75 0.03 0.22
Matches are distributed among these distances:
8 6 0.10
9 26 0.45
10 21 0.36
11 5 0.09
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.25
Consensus pattern (10 bp):
AAAAATTATA
Found at i:11695339 original size:17 final size:18
Alignment explanation
Indices: 11695317--11695357 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
11695307 GAAAAACCAC
11695317 AAAAAAT-ATAAGAAATT
1 AAAAAATGATAAGAAATT
* *
11695334 AAAAAATGCTAAGAATTT
1 AAAAAATGATAAGAAATT
11695352 AAAAAA
1 AAAAAA
11695358 AAATTGGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.68, C:0.02, G:0.07, T:0.22
Consensus pattern (18 bp):
AAAAAATGATAAGAAATT
Found at i:11695563 original size:26 final size:27
Alignment explanation
Indices: 11695503--11695554 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
11695493 TTCTATGTTG
*
11695503 AAATTTTTTGAAATGTTTTCAGATTTT
1 AAATTTTTTAAAATGTTTTCAGATTTT
11695530 AAATTTTTTAAAATG-TTTCA-ATTTT
1 AAATTTTTTAAAATGTTTTCAGATTTT
11695555 CTTATTTTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 5 0.21
26 5 0.21
27 14 0.58
ACGTcount: A:0.33, C:0.04, G:0.08, T:0.56
Consensus pattern (27 bp):
AAATTTTTTAAAATGTTTTCAGATTTT
Found at i:11695685 original size:17 final size:17
Alignment explanation
Indices: 11695665--11695702 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
11695655 TCTTCAGAAT
11695665 TTTTAAAATTTGTTGGA
1 TTTTAAAATTTGTTGGA
* *
11695682 TTTTAAAATTTTTTTGA
1 TTTTAAAATTTGTTGGA
11695699 TTTT
1 TTTT
11695703 TTTAAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.11, T:0.63
Consensus pattern (17 bp):
TTTTAAAATTTGTTGGA
Found at i:11695716 original size:26 final size:27
Alignment explanation
Indices: 11695681--11695732 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
11695671 AATTTGTTGG
11695681 ATTTTAAAATTTT-TTTGATTTTTTTAA
1 ATTTTAAAATTTTCTTT-ATTTTTTTAA
*
11695708 ATTTT-AAATTTTCTTTTTTTTTTTA
1 ATTTTAAAATTTTCTTTATTTTTTTA
11695733 CTTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (27 bp):
ATTTTAAAATTTTCTTTATTTTTTTAA
Found at i:11695738 original size:26 final size:26
Alignment explanation
Indices: 11695681--11695739 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
11695671 AATTTGTTGG
*
11695681 ATTTTAAAATTTTTTTGATTTTTTTA
1 ATTTTTAAATTTTTTTGATTTTTTTA
* *
11695707 AATTTTAAATTTTCTTT-TTTTTTTTA
1 ATTTTTAAATTTT-TTTGATTTTTTTA
*
11695733 CTTTTTA
1 ATTTTTA
11695740 TTTATGATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.24, C:0.03, G:0.02, T:0.71
Consensus pattern (26 bp):
ATTTTTAAATTTTTTTGATTTTTTTA
Found at i:11695818 original size:13 final size:13
Alignment explanation
Indices: 11695802--11695826 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11695792 AATATTTTAA
11695802 TTTTTAAAATTTG
1 TTTTTAAAATTTG
11695815 TTTTTAAAATTT
1 TTTTTAAAATTT
11695827 TTGGATTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
TTTTTAAAATTTG
Found at i:11695930 original size:30 final size:31
Alignment explanation
Indices: 11695886--11695959 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 31
11695876 TTGGAAAAAA
* *
11695886 TTTTATAA-TTTTTTTTGAA-T-TTTATAAT
1 TTTTAAAATTTTTTTTTGAATTATTTAGAAT
11695914 CTTTTAAAATTTTTTTTTGAATTATTTAGAAT
1 -TTTTAAAATTTTTTTTTGAATTATTTAGAAT
11695946 TTTTAAAATTTTTT
1 TTTTAAAATTTTTT
11695960 CAGCTTTTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 7 0.17
30 11 0.28
31 15 0.38
32 7 0.17
ACGTcount: A:0.30, C:0.01, G:0.04, T:0.65
Consensus pattern (31 bp):
TTTTAAAATTTTTTTTTGAATTATTTAGAAT
Found at i:11699110 original size:12 final size:12
Alignment explanation
Indices: 11699088--11699126 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
11699078 TAATAATCTA
*
11699088 TAAATACAAACT
1 TAAACACAAACT
*
11699100 TAAACATAAACT
1 TAAACACAAACT
*
11699112 TAAATACAAACT
1 TAAACACAAACT
11699124 TAA
1 TAA
11699127 TTTGTTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.59, C:0.15, G:0.00, T:0.26
Consensus pattern (12 bp):
TAAACACAAACT
Found at i:11704571 original size:17 final size:17
Alignment explanation
Indices: 11704541--11704587 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
11704531 ATATTTTTAA
* * *
11704541 CTTTTTTCTCAAAATTT
1 CTTTTTTTTTAAAATAT
11704558 CTTTTTTTTTAAAATAT
1 CTTTTTTTTTAAAATAT
*
11704575 -TTTTTGTTTAAAA
1 CTTTTTTTTTAAAA
11704588 AAATTGATAC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
16 12 0.46
17 14 0.54
ACGTcount: A:0.28, C:0.09, G:0.02, T:0.62
Consensus pattern (17 bp):
CTTTTTTTTTAAAATAT
Found at i:11704621 original size:58 final size:58
Alignment explanation
Indices: 11704560--11704725 Score: 201
Period size: 59 Copynumber: 2.8 Consensus size: 58
11704550 CAAAATTTCT
* *
11704560 TTTTTTTTAAAATATTTTTTGTTTAAAAAAATTGATACTTCAATTTTTCCTT-CAACA
1 TTTTTTTTAAAATATTTTTTATTTAAAAAAATTGATACTTCAATTTTTCCTTAAAACA
* * *
11704617 TTTTTTTGAAATATATTTTTTATTTAAGAAAAATTGATACTTTAACTTTTCCTTAAAACA
1 TTTTTTTTAAA-ATATTTTTTATTTAA-AAAAATTGATACTTCAATTTTTCCTTAAAACA
* * * *
11704677 -TTTTTTTGAAATATTTTTTATTTTAGAAAAATTAATATTTCAACTTTTT
1 TTTTTTTTAAAATATTTTTTA-TTTAAAAAAATTGATACTTCAA-TTTTT
11704726 GAAATTATTT
Statistics
Matches: 92, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
57 10 0.11
58 38 0.41
59 40 0.43
60 4 0.04
ACGTcount: A:0.34, C:0.08, G:0.04, T:0.54
Consensus pattern (58 bp):
TTTTTTTTAAAATATTTTTTATTTAAAAAAATTGATACTTCAATTTTTCCTTAAAACA
Found at i:11704652 original size:59 final size:59
Alignment explanation
Indices: 11704560--11704725 Score: 221
Period size: 58 Copynumber: 2.8 Consensus size: 59
11704550 CAAAATTTCT
* * *
11704560 TTTTTTTTAAAATATTTTTTGTTTAA-AAAAATTGATACTTCAATTTTTCCTT-CAACA
1 TTTTTTTGAAAATATTTTTTATTTAAGAAAAATTGATACTTCAATTTTTCCTTAAAACA
* *
11704617 TTTTTTTGAAATATATTTTTTATTTAAGAAAAATTGATACTTTAACTTTTCCTTAAAACA
1 TTTTTTTGAAA-ATATTTTTTATTTAAGAAAAATTGATACTTCAATTTTTCCTTAAAACA
* * *
11704677 TTTTTTTG-AAATATTTTTTATTTTAGAAAAATTAATATTTCAACTTTTT
1 TTTTTTTGAAAATATTTTTTATTTAAGAAAAATTGATACTTCAA-TTTTT
11704726 GAAATTATTT
Statistics
Matches: 95, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
57 10 0.11
58 43 0.45
59 30 0.32
60 12 0.13
ACGTcount: A:0.34, C:0.08, G:0.04, T:0.54
Consensus pattern (59 bp):
TTTTTTTGAAAATATTTTTTATTTAAGAAAAATTGATACTTCAATTTTTCCTTAAAACA
Found at i:11706418 original size:17 final size:17
Alignment explanation
Indices: 11706398--11706462 Score: 62
Period size: 17 Copynumber: 3.9 Consensus size: 17
11706388 TAAAGTTCAA
**
11706398 AGATTTGTAAGAATTTT
1 AGATTTGTAAGAATTAC
**
11706415 AGATTCATAAGAA-TAC
1 AGATTTGTAAGAATTAC
*
11706431 AGATTTGTAAGAATTAA
1 AGATTTGTAAGAATTAC
11706448 AGATTCT-TAAGAATT
1 AGATT-TGTAAGAATT
11706463 GAAGATAGGT
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
16 12 0.31
17 26 0.67
18 1 0.03
ACGTcount: A:0.43, C:0.05, G:0.15, T:0.37
Consensus pattern (17 bp):
AGATTTGTAAGAATTAC
Found at i:11706435 original size:33 final size:33
Alignment explanation
Indices: 11706398--11706495 Score: 101
Period size: 33 Copynumber: 2.9 Consensus size: 33
11706388 TAAAGTTCAA
**
11706398 AGATTTGTAAGAATTTTAGATTCATAAGAATAC
1 AGATTTGTAAGAATTAAAGATTCATAAGAATAC
*
11706431 AGATTTGTAAGAATTAAAGATTCTTAAGAATTGA-
1 AGATTTGTAAGAATTAAAGATTCATAAGAA-T-AC
** *
11706465 AGATAGGTAAGAATTGAAA-ATTCACAAGAAT
1 AGATTTGTAAGAATT-AAAGATTCATAAGAAT
11706496 TTAAGATTCG
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
33 28 0.51
34 23 0.42
35 4 0.07
ACGTcount: A:0.46, C:0.05, G:0.17, T:0.32
Consensus pattern (33 bp):
AGATTTGTAAGAATTAAAGATTCATAAGAATAC
Found at i:11706467 original size:17 final size:17
Alignment explanation
Indices: 11706405--11706504 Score: 69
Period size: 17 Copynumber: 5.9 Consensus size: 17
11706395 CAAAGATTTG
**
11706405 TAAGAATTTTAGATTCA
1 TAAGAATTGAAGATTCA
**
11706422 TAAGAA-T-ACAGATTTG
1 TAAGAATTGA-AGATTCA
* *
11706438 TAAGAATTAAAGATTCT
1 TAAGAATTGAAGATTCA
***
11706455 TAAGAATTGAAGATAGG
1 TAAGAATTGAAGATTCA
*
11706472 TAAGAATTGAAAATTCA
1 TAAGAATTGAAGATTCA
* *
11706489 CAAGAATTTAAGATTC
1 TAAGAATTGAAGATTC
11706505 GCAAAATTTA
Statistics
Matches: 64, Mismatches: 16, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
16 12 0.19
17 51 0.80
18 1 0.02
ACGTcount: A:0.46, C:0.06, G:0.16, T:0.32
Consensus pattern (17 bp):
TAAGAATTGAAGATTCA
Found at i:11706494 original size:34 final size:34
Alignment explanation
Indices: 11706437--11706502 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
11706427 ATACAGATTT
**
11706437 GTAAGAATTAAAGATTCTTAAGAATTGAAGATAG
1 GTAAGAATTAAAGATTCACAAGAATTGAAGATAG
*
11706471 GTAAGAATTGAAA-ATTCACAAGAATTTAAGAT
1 GTAAGAATT-AAAGATTCACAAGAATTGAAGAT
11706503 TCGCAAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 25 0.89
35 3 0.11
ACGTcount: A:0.48, C:0.05, G:0.18, T:0.29
Consensus pattern (34 bp):
GTAAGAATTAAAGATTCACAAGAATTGAAGATAG
Found at i:11706561 original size:52 final size:52
Alignment explanation
Indices: 11706482--11706581 Score: 119
Period size: 52 Copynumber: 1.9 Consensus size: 52
11706472 TAAGAATTGA
* ** * * * *
11706482 AAATTCACAAGAATTTAAGATTCGCAAAATTTATAGTTTTGTAAGAATTTTC
1 AAATTCAAAAGAATGGAAGATTCGCAAAAATTAAAGATTCGTAAGAATTTTC
* *
11706534 AAATTCAAAAGAATGGAAGGTTTGCAAAAATTAAAGATTCGTAAGAAT
1 AAATTCAAAAGAATGGAAGATTCGCAAAAATTAAAGATTCGTAAGAAT
11706582 AAAAGGTTTG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
52 39 1.00
ACGTcount: A:0.45, C:0.08, G:0.15, T:0.32
Consensus pattern (52 bp):
AAATTCAAAAGAATGGAAGATTCGCAAAAATTAAAGATTCGTAAGAATTTTC
Found at i:11706800 original size:34 final size:33
Alignment explanation
Indices: 11706746--11706813 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 33
11706736 AAAATTCACT
* *
11706746 AAAATTAAGGATTTGGAAGAACTCGAAGATTTGCA
1 AAAAGTAAGGATTTGCAAGAACTC--AGATTTGCA
*
11706781 AAAAGTAA-GATTTGCAAGAATTCAGATTTGCA
1 AAAAGTAAGGATTTGCAAGAACTCAGATTTGCA
11706813 A
1 A
11706814 GAGCTGAAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
32 10 0.33
34 13 0.43
35 7 0.23
ACGTcount: A:0.44, C:0.09, G:0.21, T:0.26
Consensus pattern (33 bp):
AAAAGTAAGGATTTGCAAGAACTCAGATTTGCA
Found at i:11706814 original size:16 final size:16
Alignment explanation
Indices: 11706771--11706815 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
11706761 GAAGAACTCG
*
11706771 AAGATTTGCAAAAAGT
1 AAGATTTGCAAGAAGT
*
11706787 AAGATTTGCAAGAATT
1 AAGATTTGCAAGAAGT
*
11706803 CAGATTTGCAAGA
1 AAGATTTGCAAGA
11706816 GCTGAAGATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.44, C:0.09, G:0.20, T:0.27
Consensus pattern (16 bp):
AAGATTTGCAAGAAGT
Found at i:11706826 original size:17 final size:17
Alignment explanation
Indices: 11706755--11706832 Score: 54
Period size: 16 Copynumber: 4.6 Consensus size: 17
11706745 TAAAATTAAG
* *
11706755 GATTTGGAAGAACTCGAA
1 GATTTGCAAGAGCT-GAA
*
11706773 GATTTGCAAAAAG-T-AA
1 GATTTGC-AAGAGCTGAA
* **
11706789 GATTTGCAAGA-ATTCA
1 GATTTGCAAGAGCTGAA
11706805 GATTTGCAAGAGCTGAA
1 GATTTGCAAGAGCTGAA
*
11706822 GATTTACAAGA
1 GATTTGCAAGA
11706833 TTTTTCGATT
Statistics
Matches: 47, Mismatches: 9, Indels: 9
0.72 0.14 0.14
Matches are distributed among these distances:
15 4 0.09
16 21 0.45
17 12 0.26
18 7 0.15
19 3 0.06
ACGTcount: A:0.41, C:0.10, G:0.23, T:0.26
Consensus pattern (17 bp):
GATTTGCAAGAGCTGAA
Found at i:11706935 original size:46 final size:43
Alignment explanation
Indices: 11706860--11707028 Score: 130
Period size: 46 Copynumber: 3.8 Consensus size: 43
11706850 ATTGAAGATT
* * * *
11706860 CATAAAA-TTCAAATATTTGCATTCGAAAAACTTCTAGGGATTCA
1 CATAAAATTTCAAAGATTT-TATTCAAAAAACTT-TAGGGTTTCA
* *
11706904 CAATGAAAATTTCAAATATTCTTATTCAAAAAACTTTAGTGTTTCA
1 C-AT-AAAATTTCAAAGATT-TTATTCAAAAAACTTTAGGGTTTCA
* * *
11706950 CATTCAATATTTCAAAGGTTTTCATT-AAAAAATTTTAGGGTTTCA
1 CA-T-AAAATTTCAAAGATTTT-ATTCAAAAAACTTTAGGGTTTCA
*
11706995 TC-TAAAATTTTAAAGATTCTTATTC-AAAAACTTT
1 -CATAAAATTTCAAAGATT-TTATTCAAAAAACTTT
11707029 GAAGATTCAC
Statistics
Matches: 102, Mismatches: 14, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
43 23 0.23
44 4 0.04
45 22 0.22
46 30 0.29
47 22 0.22
48 1 0.01
ACGTcount: A:0.40, C:0.13, G:0.08, T:0.39
Consensus pattern (43 bp):
CATAAAATTTCAAAGATTTTATTCAAAAAACTTTAGGGTTTCA
Found at i:11707367 original size:13 final size:13
Alignment explanation
Indices: 11707349--11707389 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
11707339 AAATGTTCAC
11707349 TGCATGATGCAAA
1 TGCATGATGCAAA
*
11707362 TGCATGA-CCAAA
1 TGCATGATGCAAA
*
11707374 -CCATGATGCAAA
1 TGCATGATGCAAA
11707386 TGCA
1 TGCA
11707390 ATTATCAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 4
0.73 0.13 0.13
Matches are distributed among these distances:
11 5 0.23
12 8 0.36
13 9 0.41
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.20
Consensus pattern (13 bp):
TGCATGATGCAAA
Found at i:11708248 original size:8 final size:8
Alignment explanation
Indices: 11708230--11708301 Score: 67
Period size: 8 Copynumber: 9.0 Consensus size: 8
11708220 TTTTTCTCTC
11708230 TTTTTTC-
1 TTTTTTCA
11708237 TTTTTTCA
1 TTTTTTCA
11708245 -TTTTTCA
1 TTTTTTCA
11708252 TTTTTTCA
1 TTTTTTCA
* * *
11708260 CATTTCTCG
1 -TTTTTTCA
*
11708269 TTTTTTCG
1 TTTTTTCA
*
11708277 TTCTTTCA
1 TTTTTTCA
11708285 TTTTTTCAA
1 TTTTTTC-A
11708294 TTTTTTCA
1 TTTTTTCA
11708302 CTTTATCCAT
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
7 14 0.26
8 26 0.49
9 13 0.25
ACGTcount: A:0.11, C:0.17, G:0.03, T:0.69
Consensus pattern (8 bp):
TTTTTTCA
Found at i:11708300 original size:17 final size:16
Alignment explanation
Indices: 11708230--11708301 Score: 67
Period size: 17 Copynumber: 4.5 Consensus size: 16
11708220 TTTTTCTCTC
11708230 TTTTTTC-TTTTTTCA
1 TTTTTTCATTTTTTCA
11708245 -TTTTTCATTTTTTCA
1 TTTTTTCATTTTTTCA
* * * *
11708260 CATTTCTCGTTTTTTCG
1 -TTTTTTCATTTTTTCA
*
11708277 TTCTTTCATTTTTTCAA
1 TTTTTTCATTTTTTC-A
11708294 TTTTTTCA
1 TTTTTTCA
11708302 CTTTATCCAT
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
14 6 0.14
15 8 0.18
16 11 0.25
17 19 0.43
ACGTcount: A:0.11, C:0.17, G:0.03, T:0.69
Consensus pattern (16 bp):
TTTTTTCATTTTTTCA
Found at i:11711646 original size:4 final size:4
Alignment explanation
Indices: 11711637--11711662 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
11711627 ATAAAAAGTA
11711637 AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AA
11711663 TCTTAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:11712282 original size:24 final size:24
Alignment explanation
Indices: 11712240--11712294 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 24
11712230 ATTCATTTTT
11712240 TATTTTATTTTAGAAAAAAATTTGA
1 TATTTTATTTTAGAAAAAAA-TTGA
11712265 TATTTTA-TTTA-AAGAAAAATTGA
1 TATTTTATTTTAGAA-AAAAATTGA
11712288 TACTTTT
1 TA-TTTT
11712295 CAACTTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
23 8 0.29
24 13 0.46
25 7 0.25
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (24 bp):
TATTTTATTTTAGAAAAAAATTGA
Found at i:11712339 original size:81 final size:78
Alignment explanation
Indices: 11712194--11712381 Score: 236
Period size: 79 Copynumber: 2.4 Consensus size: 78
11712184 AATTAAATTC
* * * *
11712194 TAAGAAAAAATTGATGCTTTTAACTCTTCTCTCAAGATTCATTTTTTATTTTATTTTAGAAAAAA
1 TAAGAAAAAATTGATACTTTTAACTTTTTTCTCAAAATTCATTTTTTATTTTATTTTAGAAAAAA
*
11712259 ATTTGATATTTTATT
66 A--TGATACTTTATT
*
11712274 TAA-AGAAAAATTGATACTTTTCAACTTTTTTCTCAAAATTCCTTTTTTTATTTTATTTTAG-AA
1 TAAGA-AAAAATTGATACTTTT-AACTTTTTTCTCAAAATT-CATTTTTTATTTTATTTTAGAAA
*
11712337 AAAATGATGCTTTATT
63 AAAATGATACTTTATT
* *
11712353 TAAGAAAAAATTAATACATTTAACTTTTT
1 TAAGAAAAAATTGATACTTTTAACTTTTT
11712382 CCTTAAATTT
Statistics
Matches: 95, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 8 0.08
79 28 0.29
80 19 0.20
81 21 0.22
82 19 0.20
ACGTcount: A:0.37, C:0.09, G:0.06, T:0.48
Consensus pattern (78 bp):
TAAGAAAAAATTGATACTTTTAACTTTTTTCTCAAAATTCATTTTTTATTTTATTTTAGAAAAAA
ATGATACTTTATT
Found at i:11712492 original size:60 final size:59
Alignment explanation
Indices: 11712401--11712527 Score: 177
Period size: 60 Copynumber: 2.2 Consensus size: 59
11712391 TTTTTAATAC
* * * * *
11712401 TTTTTA-TTAAAAAAATTTGATATTTCCACTTTTCTT-TAATATATTTTTTTGAAATATAT
1 TTTTTATTTAAAAAAAATGGATACTTCAACTTTT-TTGTAAAATATTTTTTTGAAATAT-T
11712460 TTTTTATTTAAAAAAAATGGATACTTCAACTTTTTTGTAAAATATTTTTTTGAAATATT
1 TTTTTATTTAAAAAAAATGGATACTTCAACTTTTTTGTAAAATATTTTTTTGAAATATT
11712519 TTTTTATTT
1 TTTTTATTT
11712528 TAGGAAAATT
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
59 18 0.30
60 43 0.70
ACGTcount: A:0.34, C:0.06, G:0.05, T:0.56
Consensus pattern (59 bp):
TTTTTATTTAAAAAAAATGGATACTTCAACTTTTTTGTAAAATATTTTTTTGAAATATT
Found at i:11712515 original size:13 final size:13
Alignment explanation
Indices: 11712499--11712523 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11712489 CTTTTTTGTA
11712499 AAATATTTTTTTG
1 AAATATTTTTTTG
11712512 AAATATTTTTTT
1 AAATATTTTTTT
11712524 ATTTTAGGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
AAATATTTTTTTG
Found at i:11715357 original size:3 final size:3
Alignment explanation
Indices: 11715349--11715381 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
11715339 TTGCATTTTT
11715349 TAA TAA TAA TAA TAA TAA TAA TAA T-A TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
11715382 TTCTTTTATG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:11723562 original size:12 final size:13
Alignment explanation
Indices: 11723534--11723563 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
11723524 TTATAGTTTT
11723534 TATTTTATCATAA
1 TATTTTATCATAA
11723547 TATTTTATCA-AA
1 TATTTTATCATAA
11723559 TATTT
1 TATTT
11723564 CGTGAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.41
13 10 0.59
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.57
Consensus pattern (13 bp):
TATTTTATCATAA
Found at i:11730894 original size:3 final size:3
Alignment explanation
Indices: 11730886--11730910 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
11730876 TAGTTGACTC
11730886 AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA A
11730911 TTGTTTGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:11734806 original size:121 final size:125
Alignment explanation
Indices: 11734587--11734833 Score: 394
Period size: 121 Copynumber: 2.0 Consensus size: 125
11734577 AAATAGACTT
* *
11734587 GGGGATTTTGAAGGCAGAACCTGTTTTGTGAAAGAGAGAGAGTGGAAATGAAATATCCAATCACC
1 GGGGATTTTGAAGGCAGAACCTGTTGTGTG-AAGAGAGAGAGTGGAAATGAAATACCCAATCACC
* * * *
11734652 CTATGTTGCAGTACCTAGTTGTGTAAACACCCATGGTGTCAACAAGATTTCATCACTCTAA
65 CTATGTTGCAGTACCTAGCTGTGCAAACACCCATGGAGTCAACAAGATATCATCACTCTAA
*
11734713 GGGGATTTTGAAGGCAG-ACCTGTTGTGTG-A-A-AGAGAGTGGAAATGAAATACCCAATCAGCC
1 GGGGATTTTGAAGGCAGAACCTGTTGTGTGAAGAGAGAGAGTGGAAATGAAATACCCAATCACCC
11734774 TATGTTGCAGTACCTAGCTGTGCAAACACCCATGGAGTCAACAAGATATCATCACTCTAA
66 TATGTTGCAGTACCTAGCTGTGCAAACACCCATGGAGTCAACAAGATATCATCACTCTAA
11734834 ATTGATGGCA
Statistics
Matches: 114, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
121 84 0.74
122 1 0.01
123 1 0.01
125 11 0.10
126 17 0.15
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (125 bp):
GGGGATTTTGAAGGCAGAACCTGTTGTGTGAAGAGAGAGAGTGGAAATGAAATACCCAATCACCC
TATGTTGCAGTACCTAGCTGTGCAAACACCCATGGAGTCAACAAGATATCATCACTCTAA
Found at i:11739427 original size:28 final size:29
Alignment explanation
Indices: 11739396--11739450 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
11739386 TTACTTCAAT
*
11739396 TTTTAAAATTTA-AAATTTTTTATTTTAA
1 TTTTAAAACTTATAAATTTTTTATTTTAA
* *
11739424 TTTTAACACTTATAATTTTTTTATTTT
1 TTTTAAAACTTATAAATTTTTTATTTT
11739451 TAAACTTCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 10 0.43
29 13 0.57
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.64
Consensus pattern (29 bp):
TTTTAAAACTTATAAATTTTTTATTTTAA
Found at i:11739468 original size:23 final size:24
Alignment explanation
Indices: 11739415--11739470 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
11739405 TTAAAATTTT
*
11739415 TTATTTTAATTTTAACACTTATAA
1 TTATTTTATTTTTAACACTTATAA
* *
11739439 TTTTTTTATTTTTAA-ACTTCATGA
1 TTATTTTATTTTTAACACTT-ATAA
11739463 -TATTTTAT
1 TTATTTTAT
11739471 ATGAATTAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 11 0.41
24 16 0.59
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.61
Consensus pattern (24 bp):
TTATTTTATTTTTAACACTTATAA
Found at i:11739885 original size:20 final size:19
Alignment explanation
Indices: 11739849--11739888 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
11739839 ATAATATATG
11739849 TATATATTATATTATAAGA
1 TATATATTATATTATAAGA
11739868 TATATAATTAT-TTGATAAGA
1 TATAT-ATTATATT-ATAAGA
11739888 T
1 T
11739889 CTGTTTACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.47
Consensus pattern (19 bp):
TATATATTATATTATAAGA
Found at i:11740619 original size:21 final size:21
Alignment explanation
Indices: 11740565--11740619 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
11740555 TTTGTGGTGA
* *
11740565 GTTTGGATTTTTTTATCCTTT
1 GTTTGTATTTTTTTATCATTT
* * *
11740586 GTTTATATATTTTTATTATTT
1 GTTTGTATTTTTTTATCATTT
*
11740607 TTTTGTATTTTTT
1 GTTTGTATTTTTT
11740620 AGTGATTAAT
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.15, C:0.04, G:0.09, T:0.73
Consensus pattern (21 bp):
GTTTGTATTTTTTTATCATTT
Found at i:11746729 original size:10 final size:10
Alignment explanation
Indices: 11746714--11746864 Score: 83
Period size: 10 Copynumber: 14.5 Consensus size: 10
11746704 CACATCTGCA
11746714 TAAAAAATTC
1 TAAAAAATTC
* *
11746724 TAAAAATTTTT
1 TAAAAA-ATTC
**
11746735 TTTAAAA-TC
1 TAAAAAATTC
*
11746744 TAAAAAAATTT
1 T-AAAAAATTC
11746755 TAAAAAAAATTC
1 T-A-AAAAATTC
11746767 TCAAAAAATAT-
1 T-AAAAAAT-TC
* *
11746778 TAAAAATTTT
1 TAAAAAATTC
11746788 TAAACAAATTC
1 TAAA-AAATTC
*
11746799 T-AAAAATTT
1 TAAAAAATTC
* *
11746808 TAAAAACTTA
1 TAAAAAATTC
*
11746818 AAAAAAATTC
1 TAAAAAATTC
*
11746828 TAAACAATTC
1 TAAAAAATTC
*
11746838 TAAAAATTTC
1 TAAAAAATTC
11746848 TAAAAAAAGTTC
1 T-AAAAAA-TTC
11746860 TAAAA
1 TAAAA
11746865 TATTTTTAAA
Statistics
Matches: 106, Mismatches: 25, Indels: 19
0.71 0.17 0.13
Matches are distributed among these distances:
9 9 0.08
10 52 0.49
11 31 0.29
12 14 0.13
ACGTcount: A:0.58, C:0.08, G:0.01, T:0.34
Consensus pattern (10 bp):
TAAAAAATTC
Done.