Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25818110
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 67000 characters in sequence are not A, C, G, or T
File 73 of 127
Found at i:14127296 original size:9 final size:8
Alignment explanation
Indices: 14127282--14127331 Score: 64
Period size: 9 Copynumber: 5.8 Consensus size: 8
14127272 GATTGTTTAA
14127282 TATTTTTT
1 TATTTTTT
14127290 CTATTTTTT
1 -TATTTTTT
14127299 TATTTATTT
1 TATTT-TTT
14127308 TATTTTATT
1 TATTTT-TT
14127317 TATTTATTT
1 TATTT-TTT
14127326 TATTTT
1 TATTTT
14127332 CTCTAAAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
8 7 0.18
9 30 0.79
10 1 0.03
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (8 bp):
TATTTTTT
Found at i:14127311 original size:5 final size:5
Alignment explanation
Indices: 14127296--14127331 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
14127286 TTTTCTATTT
14127296 TTTTA -TTTA TTTTA TTTTA -TTTA -TTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
14127332 CTCTAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 12 0.41
5 17 0.59
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:14127331 original size:18 final size:17
Alignment explanation
Indices: 14127282--14127331 Score: 75
Period size: 18 Copynumber: 2.9 Consensus size: 17
14127272 GATTGTTTAA
14127282 TATTT-TTTCTATTTTTT
1 TATTTATTT-TATTTTTT
14127299 TATTTATTTTATTTTATT
1 TATTTATTTTATTTT-TT
14127317 TATTTATTTTATTTT
1 TATTTATTTTATTTT
14127332 CTCTAAAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
17 11 0.35
18 20 0.65
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (17 bp):
TATTTATTTTATTTTTT
Found at i:14127440 original size:59 final size:58
Alignment explanation
Indices: 14127346--14127624 Score: 280
Period size: 59 Copynumber: 4.7 Consensus size: 58
14127336 AAAAAAAATA
*
14127346 AAAAAAATATTTTTGAGGAAAA-TTGAAAGTATCAATTTTCCTTAAGAATAAATTTTC
1 AAAAAAATTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAGAATAAATTTTC
* *
14127403 AAAAAAGGTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAGAATAAATTTTC
1 AAAAAA-ATTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAGAATAAATTTTC
* * * *
14127462 AAAAAAAGTTTTTTTTTTTGAGGAAAAGTTAAAAATATTC-ATTTTCC-TAGAAAATAAAAATTT
1 AAAAAAA-----TTTTTTTGAGGAAAAGTTGAAAGTA-TCAATTTTCCTTA-AGAAT-AAATTTT
14127525 C
58 C
* * * * *
14127526 AAAAAAATATTTGT-AGGGAAAAGTTGAAAGTATCAATTTTCTTTGAA-ACTAAAGTTTCC
1 AAAAAAATTTTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTT-AAGAATAAA-TTTTC
* * *
14127585 AAAAAAAATATTTTGAGAAAAAGTTGAAAGTATCAATTTT
1 AAAAAAATTTTTTTGAGGAAAAGTTGAAAGTATCAATTTT
14127625 TCTTTGTACA
Statistics
Matches: 184, Mismatches: 22, Indels: 30
0.78 0.09 0.13
Matches are distributed among these distances:
57 6 0.03
58 20 0.11
59 103 0.56
60 3 0.02
61 1 0.01
62 2 0.01
63 33 0.18
64 16 0.09
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.37
Consensus pattern (58 bp):
AAAAAAATTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAGAATAAATTTTC
Found at i:14128820 original size:20 final size:21
Alignment explanation
Indices: 14128763--14128818 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
14128753 AGCTAAAATT
*
14128763 GATTAATCCATTTTTAGAGGA
1 GATTGATCCATTTTTAGAGGA
14128784 GATTGATCCATTTTTAGAGGA
1 GATTGATCCATTTTTAGAGGA
*
14128805 GGTTGATCCATTTT
1 GATTGATCCATTTT
14128819 AGTAATTTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.27, C:0.11, G:0.21, T:0.41
Consensus pattern (21 bp):
GATTGATCCATTTTTAGAGGA
Found at i:14129638 original size:14 final size:14
Alignment explanation
Indices: 14129619--14129651 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
14129609 TATTTTAAGA
14129619 AAAAAAATAAAAAT
1 AAAAAAATAAAAAT
*
14129633 AAAAAAATAAGAAT
1 AAAAAAATAAAAAT
14129647 AAAAA
1 AAAAA
14129652 GGAAAAAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (14 bp):
AAAAAAATAAAAAT
Found at i:14129729 original size:17 final size:17
Alignment explanation
Indices: 14129709--14129748 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
14129699 ACTTTTCTTC
**
14129709 AAAAATTTATTTTTTTG
1 AAAAATTTATTTTTAAG
14129726 -AAAATTTATTTTTAAG
1 AAAAATTTATTTTTAAG
14129742 AAAAATT
1 AAAAATT
14129749 GATACTTTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (17 bp):
AAAAATTTATTTTTAAG
Found at i:14129879 original size:32 final size:32
Alignment explanation
Indices: 14129843--14129939 Score: 84
Period size: 32 Copynumber: 3.2 Consensus size: 32
14129833 ATTTTTTTGA
14129843 AACTTTGATTTTCAAGGAAAATTGATACTTTC
1 AACTTTGATTTTCAAGGAAAATTGATACTTTC
** *
14129875 AACTTT--TTCCCAA--AAATATT--T--TTTGGA
1 AACTTTGATTTTCAAGGAAA-ATTGATACTTT--C
14129902 AACTTTGATTTTCAAGGAAAATTGATACTTTC
1 AACTTTGATTTTCAAGGAAAATTGATACTTTC
14129934 AACTTT
1 AACTTT
14129940 TCCTCAAAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 22
0.63 0.08 0.29
Matches are distributed among these distances:
25 3 0.06
27 7 0.15
28 3 0.06
29 8 0.17
30 8 0.17
31 3 0.06
32 13 0.27
34 3 0.06
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.42
Consensus pattern (32 bp):
AACTTTGATTTTCAAGGAAAATTGATACTTTC
Found at i:14129957 original size:59 final size:59
Alignment explanation
Indices: 14129683--14129949 Score: 353
Period size: 59 Copynumber: 4.5 Consensus size: 59
14129673 TTGTGCAGAA
* * * * *
14129683 AAAATTAATACTTTCAACTTTTCTTCAAAAATTTATTTTTTTGAAAATTT-ATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAA--TATTTTTTTGAAACTTTGATTTTCAAGG
* *** * * *
14129743 AAAATTGATACTTTCAACTTTTTCTCAAAAACCCTTTTTTGAAA-TTTTATTTTTAAAG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAACTTTGATTTTCAAGG
14129801 AAAATTGATACTTTCAACTTTT-CTCCAAAAATATTTTTTTGAAACTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCT-CAAAAATATTTTTTTGAAACTTTGATTTTCAAGG
*
14129860 AAAATTGATACTTTCAACTTTTTCC-CAAAAATATTTTTTGGAAACTTTGATTTTCAAGG
1 AAAATTGATACTTTCAAC-TTTTCCTCAAAAATATTTTTTTGAAACTTTGATTTTCAAGG
14129919 AAAATTGATACTTTCAACTTTTCCTCAAAAA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAA
14129950 CCCTTTTTTG
Statistics
Matches: 186, Mismatches: 15, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
57 5 0.03
58 62 0.33
59 86 0.46
60 32 0.17
61 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.06, T:0.45
Consensus pattern (59 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAACTTTGATTTTCAAGG
Found at i:14130017 original size:19 final size:17
Alignment explanation
Indices: 14130002--14130120 Score: 54
Period size: 17 Copynumber: 7.1 Consensus size: 17
14129992 AAAATAAAGT
14130002 GAAAATAAATAAATAAA
1 GAAAATAAATAAATAAA
*
14130019 GAAAATAAAGAAAAGTAAA
1 GAAAATAAA-TAAA-TAAA
*
14130038 -ACAA-AAAT-AA-AAA
1 GAAAATAAATAAATAAA
* * *
14130051 TAAAATAAAGATA-AAA
1 GAAAATAAATAAATAAA
* *
14130067 GAATATTAAATAAACATAA
1 GAA-AATAAATAAATA-AA
***
14130086 TCTAATAAATAAATAAA
1 GAAAATAAATAAATAAA
14130103 TG--AATAAATAAATAAA
1 -GAAAATAAATAAATAAA
14130119 GA
1 GA
14130121 TATACATATA
Statistics
Matches: 76, Mismatches: 16, Indels: 21
0.67 0.14 0.19
Matches are distributed among these distances:
13 3 0.04
14 3 0.04
15 6 0.08
16 20 0.26
17 21 0.28
18 17 0.22
19 6 0.08
ACGTcount: A:0.71, C:0.03, G:0.07, T:0.19
Consensus pattern (17 bp):
GAAAATAAATAAATAAA
Found at i:14130023 original size:28 final size:29
Alignment explanation
Indices: 14129973--14130028 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 29
14129963 TTTATTTAAA
14129973 GAAAATAGAATAATAAAACAAAATAAAGT
1 GAAAATAGAATAATAAAACAAAATAAAGT
*
14130002 GAAAATA-AATAA-ATAAAGAAAATAAAG
1 GAAAATAGAATAATA-AAACAAAATAAAG
14130029 AAAAGTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 1 0.04
28 17 0.68
29 7 0.28
ACGTcount: A:0.71, C:0.02, G:0.11, T:0.16
Consensus pattern (29 bp):
GAAAATAGAATAATAAAACAAAATAAAGT
Found at i:14130096 original size:4 final size:4
Alignment explanation
Indices: 14130089--14130170 Score: 60
Period size: 4 Copynumber: 20.5 Consensus size: 4
14130079 AACATAATCT
* * * * * *
14130089 AATA AATA AATA AATG AATA AATA AATA AAGA TATA CATA TATT AATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA
* *
14130137 CATA GTAAT- AATA AATA AAT- AATA AATA CATA AA
1 AATA --AATA AATA AATA AATA AATA AATA AATA AA
14130171 ATACAAAATA
Statistics
Matches: 60, Mismatches: 14, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
3 6 0.10
4 52 0.87
6 2 0.03
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.28
Consensus pattern (4 bp):
AATA
Found at i:14130211 original size:20 final size:20
Alignment explanation
Indices: 14130153--14130218 Score: 66
Period size: 19 Copynumber: 3.2 Consensus size: 20
14130143 AATAATAAAT
14130153 AAATAATAAATACATAAAATACA
1 AAATAA-AAATACA-AAAATA-A
14130176 AAATAAAGGAA-A-AAAAATAA
1 AAATAAA--AATACAAAAATAA
14130196 AAATAAAAATAC-AAAATAA
1 AAATAAAAATACAAAAATAA
14130215 AAAT
1 AAAT
14130219 CAATTACCCA
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
18 2 0.05
19 12 0.31
20 8 0.21
21 6 0.15
22 2 0.05
23 7 0.18
24 2 0.05
ACGTcount: A:0.76, C:0.05, G:0.03, T:0.17
Consensus pattern (20 bp):
AAATAAAAATACAAAAATAA
Found at i:14134498 original size:2 final size:2
Alignment explanation
Indices: 14134491--14134517 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
14134481 TGCTCTCAGG
14134491 GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA G
14134518 TATTTATCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:14136093 original size:64 final size:63
Alignment explanation
Indices: 14136035--14136214 Score: 149
Period size: 64 Copynumber: 2.8 Consensus size: 63
14136025 AAAAAATTGA
*
14136035 ATGTCAATAAT-CTCTTCTAA-TTTTTTA-AAGGAGATTATTCAAAGTGTTTTTGATAAAAAAAT
1 ATGTCAATAATCCT-TTCTAATTTTTTTATAAGG-GATTATTCAAAGCGTTTTTGATAAAAAAAT
* * * * *
14136097 CTTTCAATAATCCTTTTTAATTTTTTTATTAAGGGATTATTTAAAGCGTTTTTGACAAAAAAA-
1 ATGTCAATAATCCTTTCTAATTTTTTTA-TAAGGGATTATTCAAAGCGTTTTTGATAAAAAAAT
* * * *
14136160 ATTGCCTCTAATAACCTCTTTC-AA--TTTTTATAAGGGAATATTCAAGGCATTTTTG
1 A-TG--TC-AATAATC-CTTTCTAATTTTTTTATAAGGGATTATTCAAAGCGTTTTTG
14136215 CCAAAAAATG
Statistics
Matches: 95, Mismatches: 14, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
62 14 0.15
63 9 0.09
64 48 0.51
65 10 0.11
66 2 0.02
67 8 0.08
68 4 0.04
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.43
Consensus pattern (63 bp):
ATGTCAATAATCCTTTCTAATTTTTTTATAAGGGATTATTCAAAGCGTTTTTGATAAAAAAAT
Found at i:14136618 original size:125 final size:125
Alignment explanation
Indices: 14136382--14136665 Score: 310
Period size: 125 Copynumber: 2.3 Consensus size: 125
14136372 ATTCTTTAAA
**
14136382 AAAGGTGTTTCTGGCCTAAAATAT--CTTCAATAATCATCTCGTAATTTTTTTTATGAATTATTT
1 AAAGGTGTTTCTGG-CTAAAA-ATGCCTTCAATAATCATCTCACAATTTTTTTTATGAATTATTT
* * * *
14136445 AAAATAATTTTTTTGCCAAAAATGCCTTAAATATTCCTTTAAAAAAATTGAATATGATCATT
64 AAAATAATTTTTTTGCCAAAAATACCTTAAATAATCCTATAAAAAAATTGAATAGGATCATT
*
14136507 AAAGGTATTTCTGGCTAAAAATGCCTTCAATAATC-TCCTCACAATTTTTTTTATGAATTATTTA
1 AAAGGTGTTTCTGGCTAAAAATGCCTTCAATAATCAT-CTCACAATTTTTTTTATGAATTATTTA
* * * * * * *
14136571 AGA-CA-TTTTTTGTCAGAAAATACCTTGAATAAT-CTCATACAATAAATTGAATAGGGTTATT
65 AAATAATTTTTTTGCCA-AAAATACCTTAAATAATCCT-ATA-AAAAAATTGAATAGGATCATT
* * * *
14136632 GAATGTGTTTCTAGCAAAAAATGCCTTCAATAAT
1 AAAGGTGTTTCTGGCTAAAAATGCCTTCAATAAT
14136666 TTTGTTAAAT
Statistics
Matches: 134, Mismatches: 19, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
123 13 0.10
124 24 0.18
125 97 0.72
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.40
Consensus pattern (125 bp):
AAAGGTGTTTCTGGCTAAAAATGCCTTCAATAATCATCTCACAATTTTTTTTATGAATTATTTAA
AATAATTTTTTTGCCAAAAATACCTTAAATAATCCTATAAAAAAATTGAATAGGATCATT
Found at i:14137587 original size:23 final size:21
Alignment explanation
Indices: 14137550--14137607 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 21
14137540 GTAGTACCAA
*
14137550 AATTTTT-ACTTTAAAGTTTAAC
1 AATTTTTAACTCTAAA-TTT-AC
* *
14137572 ATTTTTTAACTCTAAATTTTC
1 AATTTTTAACTCTAAATTTAC
14137593 AATTTTTAACTCTAA
1 AATTTTTAACTCTAA
14137608 TGTTAATGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 15 0.48
22 9 0.29
23 7 0.23
ACGTcount: A:0.34, C:0.12, G:0.02, T:0.52
Consensus pattern (21 bp):
AATTTTTAACTCTAAATTTAC
Found at i:14139595 original size:2 final size:2
Alignment explanation
Indices: 14139588--14139619 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
14139578 GTTGTATGTT
14139588 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14139620 GAAAAATAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14145782 original size:13 final size:13
Alignment explanation
Indices: 14145741--14145795 Score: 60
Period size: 13 Copynumber: 4.3 Consensus size: 13
14145731 CAAAAGAGTA
*
14145741 TAAAATATAAATCT
1 TAAAA-ATAAATAT
14145755 TAAAAAT-AAT-T
1 TAAAAATAAATAT
*
14145766 TAAAAATAAATAA
1 TAAAAATAAATAT
*
14145779 TAAAATTAAATAT
1 TAAAAATAAATAT
14145792 TAAA
1 TAAA
14145796 TCAATAAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
11 8 0.22
12 6 0.17
13 17 0.47
14 5 0.14
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (13 bp):
TAAAAATAAATAT
Found at i:14145809 original size:20 final size:20
Alignment explanation
Indices: 14145740--14145810 Score: 60
Period size: 20 Copynumber: 3.6 Consensus size: 20
14145730 ACAAAAGAGT
*
14145740 ATAAAATATAAATCTTAAA-A
1 ATAAAATA-AAATATTAAATA
**
14145760 ATAATTTAAAA-A-TAAATA
1 ATAAAATAAAATATTAAATA
*
14145778 ATAAAATTAAATATTAAATCA
1 ATAAAATAAAATATTAAAT-A
14145799 ATAAAA-AAAATA
1 ATAAAATAAAATA
14145811 ATGATGATTA
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
17 4 0.10
18 9 0.22
19 4 0.10
20 16 0.40
21 7 0.17
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (20 bp):
ATAAAATAAAATATTAAATA
Found at i:14147493 original size:106 final size:106
Alignment explanation
Indices: 14147366--14147581 Score: 396
Period size: 106 Copynumber: 2.0 Consensus size: 106
14147356 TACATAAGTA
* *
14147366 ATACACTAATATGCAATACACAAAACAAAACCAATCGGCAAACCATACATATATCAATGAAATAC
1 ATACACCAATATGCAATACACAAAACAAAACAAATCGGCAAACCATACATATATCAATGAAATAC
14147431 ATCAATGAAAATTATGAAATCATATATCAATGAAACCATGC
66 ATCAATGAAAATTATGAAATCATATATCAATGAAACCATGC
*
14147472 ATACACCAATATGCAATACACAAAACAAAACAAATCGGTAAACCATACATATATCAATGAAATAC
1 ATACACCAATATGCAATACACAAAACAAAACAAATCGGCAAACCATACATATATCAATGAAATAC
*
14147537 ATCAATGAAAATTATGAAATCATATATCAATGAAACCATGT
66 ATCAATGAAAATTATGAAATCATATATCAATGAAACCATGC
14147578 ATAC
1 ATAC
14147582 CAAAAAAATT
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
106 106 1.00
ACGTcount: A:0.51, C:0.19, G:0.07, T:0.22
Consensus pattern (106 bp):
ATACACCAATATGCAATACACAAAACAAAACAAATCGGCAAACCATACATATATCAATGAAATAC
ATCAATGAAAATTATGAAATCATATATCAATGAAACCATGC
Found at i:14148472 original size:132 final size:133
Alignment explanation
Indices: 14148233--14148513 Score: 352
Period size: 132 Copynumber: 2.1 Consensus size: 133
14148223 ATAAAAATTT
*
14148233 TTATTTGATACTTTTTCCAGAATCTTTAAGCCCATTTAAATAAGGTATTTCTTTTTTACAAATGC
1 TTATTTGATACTTTTTCCAGAATCTTTAAGCCCATTCAAATAAGGTATTTCTTTTTTACAAATGC
* ** * * * ** *
14148298 CTTATTTGATAGACAATTTTTTATAATTTTTACAAAAGCAAATAAGGTGTTT-CTTTGAACAAAT
66 CTTATTTGATAGACAATCTTCCAAAATCTTTACAAAAGCAAATAAAGCATTTCCTTTGAACAAAC
*
14148362 GTC
131 GGC
* * * *
14148365 TTATTTGATGCTTTTTCTAGAATCTTTAAGCCTATTCATATAAGGCGT-TTTC-TTTTTACAAAT
1 TTATTTGATACTTTTTCCAGAATCTTTAAGCCCATTCAAATAA-G-GTATTTCTTTTTTACAAAT
* * **
14148428 GCCTTATTTGATAGACGATCTTCCAAAATCTTTAGAAATTCAAATAAAGCATTTCCTTTGAACAA
64 GCCTTATTTGATAGACAATCTTCCAAAATCTTTACAAAAGCAAATAAAGCATTTCCTTTGAACAA
14148493 ACGGC
129 ACGGC
14148498 TTATTTGATACTTTTT
1 TTATTTGATACTTTTT
14148514 TTCAATGTAC
Statistics
Matches: 126, Mismatches: 20, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
132 91 0.72
133 33 0.26
134 2 0.02
ACGTcount: A:0.31, C:0.15, G:0.11, T:0.43
Consensus pattern (133 bp):
TTATTTGATACTTTTTCCAGAATCTTTAAGCCCATTCAAATAAGGTATTTCTTTTTTACAAATGC
CTTATTTGATAGACAATCTTCCAAAATCTTTACAAAAGCAAATAAAGCATTTCCTTTGAACAAAC
GGC
Found at i:14149558 original size:13 final size:12
Alignment explanation
Indices: 14149540--14149569 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
14149530 GGGGTCAACC
14149540 TTTTCTTTTTTCT
1 TTTTCTTTTTT-T
14149553 TTTTCTTTTTTT
1 TTTTCTTTTTTT
14149565 TTTTC
1 TTTTC
14149570 CTCTCTCAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (12 bp):
TTTTCTTTTTTT
Found at i:14155741 original size:119 final size:121
Alignment explanation
Indices: 14155559--14155796 Score: 315
Period size: 119 Copynumber: 2.0 Consensus size: 121
14155549 ACAACAATTT
* * * * *
14155559 TTAATTTCAATTATTATTATTAAATTTTAAAAAATTATCAAATATCAATAAAATTTTTCAAAACA
1 TTAATTTCAATAATAATTATTAAATTTTAAAAAATTATCAAATATAAACAAAATATTTCAAAACA
*
14155624 AATATAAATCTTAATACACATC-AAACCTAAATTTTA-CAT-AAATCAACATAAATAA
66 AATATAAATCTTAATACACATCTAAACC-AAA-TTTACCATAAAATCAACAAAAATAA
* *
14155679 TTAATTTCAATAATAATTATTAATTTTTTAAAAA-TATCAAATATAAACAAAGA-ATTTCAAAAC
1 TTAATTTCAATAATAATTATTAAATTTTAAAAAATTATCAAATATAAACAAA-ATATTTCAAAAC
* * *
14155742 TAATATAAATCTTAATACACGTCTAATCCAAATTTACCATAAAATCAACAAAAAT
65 AAATATAAATCTTAATACACATCTAAACCAAATTTACCATAAAATCAACAAAAAT
14155797 CTTACATGTC
Statistics
Matches: 103, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 51 0.50
120 48 0.47
ACGTcount: A:0.52, C:0.12, G:0.01, T:0.35
Consensus pattern (121 bp):
TTAATTTCAATAATAATTATTAAATTTTAAAAAATTATCAAATATAAACAAAATATTTCAAAACA
AATATAAATCTTAATACACATCTAAACCAAATTTACCATAAAATCAACAAAAATAA
Found at i:14158129 original size:13 final size:14
Alignment explanation
Indices: 14158110--14158147 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
14158100 TCTTTAATCT
14158110 AAAATAATAAAAT-
1 AAAATAATAAAATA
*
14158123 TAAATAA-AAAATA
1 AAAATAATAAAATA
14158136 AAAATAATAAAA
1 AAAATAATAAAA
14158148 ATGAGATCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
12 5 0.24
13 12 0.57
14 4 0.19
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (14 bp):
AAAATAATAAAATA
Found at i:14158137 original size:17 final size:16
Alignment explanation
Indices: 14158109--14158148 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
14158099 TTCTTTAATC
*
14158109 TAAAATAATAAAATTAAA
1 TAAAA-AATAAAAAT-AA
14158127 TAAAAAATAAAAATAA
1 TAAAAAATAAAAATAA
14158143 TAAAAA
1 TAAAAA
14158149 TGAGATCTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.38
17 8 0.38
18 5 0.24
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.23
Consensus pattern (16 bp):
TAAAAAATAAAAATAA
Found at i:14161416 original size:15 final size:15
Alignment explanation
Indices: 14161352--14161407 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 15
14161342 AAAACTTTCC
14161352 TTATCTTATCTT-TTT
1 TTATCTT-TCTTGTTT
14161367 TTAATCTTTCTTGTTT
1 TT-ATCTTTCTTGTTT
* *
14161383 CTATCTCTTTTTCGTTT
1 TTATCT-TTCTT-GTTT
14161400 TTATCTTT
1 TTATCTTT
14161408 TTTTTTTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
15 10 0.29
16 15 0.44
17 9 0.26
ACGTcount: A:0.11, C:0.16, G:0.04, T:0.70
Consensus pattern (15 bp):
TTATCTTTCTTGTTT
Found at i:14165283 original size:3 final size:3
Alignment explanation
Indices: 14165275--14165349 Score: 150
Period size: 3 Copynumber: 25.0 Consensus size: 3
14165265 CAAAAGCACA
14165275 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
14165323 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
14165350 GGGTTAAAAA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 72 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:14166642 original size:24 final size:25
Alignment explanation
Indices: 14166595--14166642 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
14166585 ACAATATATG
*
14166595 AAATAATATTTTTTTATTTCAAATA
1 AAATAATATTTTTTAATTTCAAATA
14166620 AAATAATATTTTTTAATTT-AAAT
1 AAATAATATTTTTTAATTTCAAAT
14166643 GTTAAAAACG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (25 bp):
AAATAATATTTTTTAATTTCAAATA
Found at i:14166748 original size:16 final size:17
Alignment explanation
Indices: 14166720--14166751 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
14166710 ATATATGAAG
14166720 CTCAAAGCCCATAAAAA
1 CTCAAAGCCCATAAAAA
14166737 CTCAAA-CCCATAAAA
1 CTCAAAGCCCATAAAA
14166752 CCAAAATACG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.53, C:0.31, G:0.03, T:0.12
Consensus pattern (17 bp):
CTCAAAGCCCATAAAAA
Found at i:14170075 original size:2 final size:2
Alignment explanation
Indices: 14170068--14170095 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
14170058 TCAAGTTTAA
14170068 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14170096 TAAGTTTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14170180 original size:16 final size:17
Alignment explanation
Indices: 14170159--14170190 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
14170149 ATAAATTATA
14170159 TATATTTT-AATTTTTT
1 TATATTTTAAATTTTTT
14170175 TATATTTTAAATTTTT
1 TATATTTTAAATTTTT
14170191 ATAACATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (17 bp):
TATATTTTAAATTTTTT
Found at i:14170233 original size:23 final size:24
Alignment explanation
Indices: 14170202--14170256 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
14170192 TAACATAAAA
* *
14170202 ATAATAATTTTATGTCAAAAT-AT
1 ATAAAAATTTTATATCAAAATAAT
* *
14170225 ATTAAAATTTTATATTAAAATAAT
1 ATAAAAATTTTATATCAAAATAAT
14170249 ATAAAAAT
1 ATAAAAAT
14170257 AAAAAATTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 17 0.65
24 9 0.35
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (24 bp):
ATAAAAATTTTATATCAAAATAAT
Found at i:14171279 original size:13 final size:14
Alignment explanation
Indices: 14171254--14171298 Score: 56
Period size: 13 Copynumber: 3.1 Consensus size: 14
14171244 TATTTCTTTT
14171254 ATTACTATATAATTA
1 ATTA-TATATAATTA
*
14171269 ATTAT-TATAATAA
1 ATTATATATAATTA
14171282 ATTATATATATATTA
1 ATTATATATA-ATTA
14171297 AT
1 AT
14171299 AATAAATTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
13 12 0.46
14 5 0.19
15 9 0.35
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (14 bp):
ATTATATATAATTA
Found at i:14172399 original size:22 final size:22
Alignment explanation
Indices: 14172371--14172414 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
14172361 CATGGGATGC
*
14172371 TTGTAAAAAATGTAAATTTGTT
1 TTGTAAAAAATGTAAACTTGTT
*
14172393 TTGTAAAAACTGTAAACTTGTT
1 TTGTAAAAAATGTAAACTTGTT
14172415 ATATTCTCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.39, C:0.05, G:0.14, T:0.43
Consensus pattern (22 bp):
TTGTAAAAAATGTAAACTTGTT
Found at i:14173135 original size:13 final size:13
Alignment explanation
Indices: 14173117--14173141 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14173107 TGAAAGCTTA
14173117 TTTCTCAAGAATT
1 TTTCTCAAGAATT
14173130 TTTCTCAAGAAT
1 TTTCTCAAGAAT
14173142 GGTTTTTAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.44
Consensus pattern (13 bp):
TTTCTCAAGAATT
Found at i:14177677 original size:23 final size:25
Alignment explanation
Indices: 14177641--14177687 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
14177631 TATTTTGAAA
*
14177641 ACTTATTTGAAAATA-TTTTTTTTG
1 ACTTATTTGAAAATAGTCTTTTTTG
14177665 ACTTATTTG-AAATAGTCTTTTTT
1 ACTTATTTGAAAATAGTCTTTTTT
14177688 ATAATTATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.28, C:0.06, G:0.09, T:0.57
Consensus pattern (25 bp):
ACTTATTTGAAAATAGTCTTTTTTG
Found at i:14179222 original size:119 final size:119
Alignment explanation
Indices: 14179099--14179965 Score: 841
Period size: 119 Copynumber: 7.3 Consensus size: 119
14179089 GAGACAAAAC
* * * *
14179099 CATGAATCATATGAAATGATTTGGACTGAGCCAAGATCCAATGACCGGGACGAAACCACGAGTCA
1 CATGAATCATATGAAATGATCTGGACTGAGCCAAGATCAAATGACTGGGATGAAACCACGAGTCA
* * *
14179164 AAATGAAGTGATCAAGACCAAGTCGAGATAAAAAATAAATGATCGAGATGAAAT
66 AAATGAAGTGACCAAGATCAAGTCGAGGTAAAAAATAAATGATCGAGATGAAAT
* * * * * * *
14179218 CATGAATCATATGAAATGATCTCGACTAAACCAAGAT-AAAGTGATTGAGATAAAATCACGAGTC
1 CATGAATCATATGAAATGATCTGGACTGAGCCAAGATCAAA-TGACTGGGATGAAACCACGAGTC
* * * ** * * ** * * *
14179282 AAAATGAAATGACTAAAATTGAGTCGAAGTTAAAAATAAACAACCGGGATGAAAC
65 AAAATGAAGTGACCAAGATCAAGTCGAGGTAAAAAATAAATGATCGAGATGAAAT
* * * ** * * *
14179337 CATGAATCATATGAAATGATCTGCATTGAGTCAAGATTGAATGACTGTGACGTAACCACGAGTCA
1 CATGAATCATATGAAATGATCTGGACTGAGCCAAGATCAAATGACTGGGATGAAACCACGAGTCA
* * *
14179402 AAATGAAGTAACCAAGATCAAGTCAAGGTCAAAAATAAATGATCGAGATGAAA-
66 AAATGAAGTGACCAAGATCAAGTCGAGGTAAAAAATAAATGATCGAGATGAAAT
* * * * * * * * *
14179455 CCTCGAATCATATAAAATGATTTGGATTTAGCCAAAATCAAATAACCGGGATGAAATCACGAGTC
1 CAT-GAATCATATGAAATGATCTGGACTGAGCCAAGATCAAATGACTGGGATGAAACCACGAGTC
* * * * * * * *
14179520 AAAATGAAGCGACGAAGA-CTGAGTTGAAGTAAAAAATAAATAATC-ATGAGGAAAC
65 AAAATGAAGTGACCAAGATC-AAGTCGAGGTAAAAAATAAATGATCGA-GATGAAAT
* * * * * *
14179575 CATGAATCATATGAAATGATTTGGATTGAGCCAAGATCGAGTGATTGGGATGAAATCACGAGTCA
1 CATGAATCATATGAAATGATCTGGACTGAGCCAAGATCAAATGACTGGGATGAAACCACGAGTCA
* * * ** * *
14179640 AAATGAAG-CACCTAAGATCGAGTTGAGGTTCAAAATAAATGA-CCAGAATAAAAT
66 AAATGAAGTGACC-AAGATCAAGTCGAGGTAAAAAATAAATGATCGAG-ATGAAAT
*
14179694 CATGAATCATATGAAATGATCTGGACTGAGCCAAAATCAAATGACTAGGG-TGAAACCACGAGTC
1 CATGAATCATATGAAATGATCTGGACTGAGCCAAGATCAAATGACT-GGGATGAAACCACGAGTC
* * *
14179758 AAAATGAAATGACCAAGATCAAGTCGAGGTCAAAAATAAATAATGACCGAGATGAAAT
65 AAAATGAAGTGACCAAGATCAAGTCGAGGT-AAAAA-ATA-AATGATCGAGATGAAAT
* * * * *
14179816 CATAAATCATATGAAATGATCTGGACTGAGCCAACATCAAGTGATTAGGATGAAACCACGAGTCA
1 CATGAATCATATGAAATGATCTGGACTGAGCCAAGATCAAATGACTGGGATGAAACCACGAGTCA
** **
14179881 AAACAAAGTGACCAAGATCAAGTCGAGGTAAAAAATAAACAATCGAGATGAAAT
66 AAATGAAGTGACCAAGATCAAGTCGAGGTAAAAAATAAATGATCGAGATGAAAT
**
14179935 CATGAATCATAAAAAATGATCTAGG-CTGAGC
1 CATGAATCATATGAAATGATCT-GGACTGAGC
14179966 TGAGATCAGA
Statistics
Matches: 604, Mismatches: 126, Indels: 36
0.79 0.16 0.05
Matches are distributed among these distances:
118 10 0.02
119 470 0.78
120 18 0.03
121 9 0.01
122 94 0.16
123 3 0.00
ACGTcount: A:0.45, C:0.15, G:0.20, T:0.21
Consensus pattern (119 bp):
CATGAATCATATGAAATGATCTGGACTGAGCCAAGATCAAATGACTGGGATGAAACCACGAGTCA
AAATGAAGTGACCAAGATCAAGTCGAGGTAAAAAATAAATGATCGAGATGAAAT
Found at i:14179677 original size:357 final size:358
Alignment explanation
Indices: 14179099--14179956 Score: 996
Period size: 357 Copynumber: 2.4 Consensus size: 358
14179089 GAGACAAAAC
* * *
14179099 CATGAATCATATGAAATGATTTGGACTGAGCCAAGATCCAATGACCGGGACGAAACCACGAGTCA
1 CATGAATCATATGAAATGATTTGGACTGAGCCAAAATCAAATGACCGGGATGAAACCACGAGTCA
* *
14179164 AAATGAAGTGATCAAGACCAAGTCG-AGATAAAAAATAAATGATCGAGATGAAATCATGAATCAT
66 AAATGAAGTGA-CAAGACTAAGTCGAAG-TAAAAAATAAATAATCGAGATGAAATCATGAATCAT
14179228 ATGAAATGATCTCGACTAAACCAAGATAAAGTGATTGAGATAAAATCACGAGTCAAAATGAAATG
129 ATGAAATGATCTCGACTAAACCAAGATAAAGTGATTGAGATAAAATCACGAGTCAAAATGAAATG
* * * *
14179293 ACTAAAATTGAGTCGAAGTTAAAAATAAACAACCGGGATGAAACCATGAATCATATGAAATGATC
194 ACTAAAATCGAGTCGAAGTTAAAAATAAACAACCAGAATAAAACCATGAATCATATGAAATGATC
* * * ** * *
14179358 TGCATTGAGTCAAGATTGAATGACT-GTGACGTAACCACGAGTCAAAATGAAGTAACCAAGATCA
259 TGCACTGAGCCAAAATCAAATGACTAG-GACGAAACCACGAGTCAAAATGAAATAACCAAGATCA
*
14179422 AGTCAAGGTCAAAAAT-A-AATGATCGAGATGAAA-
323 AGTCAAGGTCAAAAATAATAATGACCGAGATGAAAT
* * * * * *
14179455 CCTCGAATCATATAAAATGATTTGGATTTAGCCAAAATCAAATAACCGGGATGAAATCACGAGTC
1 CAT-GAATCATATGAAATGATTTGGACTGAGCCAAAATCAAATGACCGGGATGAAACCACGAGTC
* * * * *
14179520 AAAATGAAGCGACGAAGACTGAGTTGAAGTAAAAAATAAATAATC-ATGAGGAAACCATGAATCA
65 AAAATGAAGTGAC-AAGACTAAGTCGAAGTAAAAAATAAATAATCGA-GATGAAATCATGAATCA
* * * * * ** * *
14179584 TATGAAATGATTTGGATTGAGCCAAGATCGAGTGATTGGGATGAAATCACGAGTCAAAATG-AA-
128 TATGAAATGATCTCGACTAAACCAAGATAAAGTGATTGAGATAAAATCACGAGTCAAAATGAAAT
* * * * ** *
14179647 GCACCTAAGATCGAGTTGAGGTTCAAAATAAATGACCAGAATAAAATCATGAATCATATGAAATG
193 G-A-CTAAAATCGAGTCGAAGTTAAAAATAAACAACCAGAATAAAACCATGAATCATATGAAATG
* ** *
14179712 ATCTGGACTGAGCCAAAATCAAATGACTAGGGTGAAACCACGAGTCAAAATGAAATGACCAAGAT
256 ATCTGCACTGAGCCAAAATCAAATGACTAGGACGAAACCACGAGTCAAAATGAAATAACCAAGAT
*
14179777 CAAGTCGAGGTCAAAAATAAATAATGACCGAGATGAAAT
321 CAAGTCAAGGTCAAAAAT-AATAATGACCGAGATGAAAT
* * * * ***
14179816 CATAAATCATATGAAATGATCTGGACTGAGCCAACATCAAGTGATTAGGATGAAACCACGAGTCA
1 CATGAATCATATGAAATGATTTGGACTGAGCCAAAATCAAATGACCGGGATGAAACCACGAGTCA
** * *
14179881 AAACAAAGTGACCAAGA-TCAAGTCGAGGTAAAAAATAAACAATCGAGATGAAATCATGAATCAT
66 AAATGAAGTGA-CAAGACT-AAGTCGAAGTAAAAAATAAATAATCGAGATGAAATCATGAATCAT
**
14179945 AAAAAATGATCT
129 ATGAAATGATCT
14179957 AGGCTGAGCT
Statistics
Matches: 414, Mismatches: 74, Indels: 24
0.81 0.14 0.05
Matches are distributed among these distances:
355 1 0.00
356 7 0.02
357 274 0.66
358 3 0.01
359 2 0.00
360 123 0.30
361 4 0.01
ACGTcount: A:0.45, C:0.15, G:0.20, T:0.21
Consensus pattern (358 bp):
CATGAATCATATGAAATGATTTGGACTGAGCCAAAATCAAATGACCGGGATGAAACCACGAGTCA
AAATGAAGTGACAAGACTAAGTCGAAGTAAAAAATAAATAATCGAGATGAAATCATGAATCATAT
GAAATGATCTCGACTAAACCAAGATAAAGTGATTGAGATAAAATCACGAGTCAAAATGAAATGAC
TAAAATCGAGTCGAAGTTAAAAATAAACAACCAGAATAAAACCATGAATCATATGAAATGATCTG
CACTGAGCCAAAATCAAATGACTAGGACGAAACCACGAGTCAAAATGAAATAACCAAGATCAAGT
CAAGGTCAAAAATAATAATGACCGAGATGAAAT
Found at i:14184822 original size:3 final size:3
Alignment explanation
Indices: 14184816--14184846 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
14184806 AATGAAAATA
14184816 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
14184847 TATACTATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:14185877 original size:31 final size:32
Alignment explanation
Indices: 14185805--14185884 Score: 83
Period size: 31 Copynumber: 2.5 Consensus size: 32
14185795 GGACTCGAGG
14185805 TTGATTTAGGGTTAAAGGTTTAAGATTTGGTGT
1 TTGATTTAGGGTT-AAGGTTTAAGATTTGGTGT
** * * * *
14185838 AGGGTTTAGGGTT-AGGTTTAGGGTTTGTTGT
1 TTGATTTAGGGTTAAGGTTTAAGATTTGGTGT
14185869 TTGATTTAGGG-TAAGG
1 TTGATTTAGGGTTAAGG
14185885 GTTTGGTTTA
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
30 1 0.03
31 26 0.70
33 10 0.27
ACGTcount: A:0.20, C:0.00, G:0.36, T:0.44
Consensus pattern (32 bp):
TTGATTTAGGGTTAAGGTTTAAGATTTGGTGT
Found at i:14185894 original size:18 final size:18
Alignment explanation
Indices: 14185830--14185916 Score: 84
Period size: 18 Copynumber: 4.7 Consensus size: 18
14185820 AGGTTTAAGA
*
14185830 TTTGGTGTAGGGTTTAGGG
1 TTTGGTTTAGGG-TTAGGG
* * *
14185849 TTAGGTTTAGGGTTTGTTG
1 TTTGGTTTAGGGTTAG-GG
* *
14185868 TTTGATTTAGGGTAAGGG
1 TTTGGTTTAGGGTTAGGG
*
14185886 TTTGGTTTAAGGTTAGGG
1 TTTGGTTTAGGGTTAGGG
*
14185904 TTTGATTTAGGGT
1 TTTGGTTTAGGGT
14185917 AAATTTAAAT
Statistics
Matches: 53, Mismatches: 14, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
18 30 0.57
19 23 0.43
ACGTcount: A:0.15, C:0.00, G:0.39, T:0.46
Consensus pattern (18 bp):
TTTGGTTTAGGGTTAGGG
Found at i:14189404 original size:180 final size:177
Alignment explanation
Indices: 14189127--14189591 Score: 480
Period size: 180 Copynumber: 2.6 Consensus size: 177
14189117 CCCATTTGAA
* * * * *
14189127 CTTCTAAAATCTCTTAAAAAATCTTGAACATAGGTCATCTAGTGTAGCACATGTT-TGAAAACAA
1 CTTCTAAAATCACCTAAAAATTCTTGAACATAGGTTAT-T-GTTTAGCACAT-TTGTGAAAA-AA
* * * * *
14189191 TTCAACACCAAATTCTCAT-TGTAAAT-TTTCAAAATTAGCTTGCAATGTTGCCTACACAACTTT
62 TTCAA-ACCAAATTCTCATCT-CAAGTGATTCAAAATTAGCTTGAAATGCTGCCTACACAACTTT
** **
14189254 AAGAAATTCTAAATGTGGCTTTTGTTTTTAATTCTTTTGAGCACCAATTTATG
125 AAGAAATTCTAAACATGGCTTCAGTTTTTAATTCTTTTGAGCACCAATTTATG
*
14189307 CTTCTAAAATCACCCAAAAATTCTTGAACATAGGTTATTTGGTTTAGCACATTTGTGAAAAAATT
1 CTTCTAAAATCACCTAAAAATTCTTGAACATAGGTTA-TT-GTTTAGCACATTTGTGAAAAAATT
* * * * *
14189372 CAATTCCAAATTCTCATCTCAAGTGGTTCAAAATTAGCTTGAAATGCTGCCTATATAGCTTTAAG
64 CAA-ACCAAATTCTCATCTCAAGTGATTCAAAATTAGCTTGAAATGCTGCCTACACAACTTTAAG
*
14189437 AAATTCTAAACATGGCTTCAGTTTTTAATTCTTTTGAGCACCAATTTGTG
128 AAATTCTAAACATGGCTTCAGTTTTTAATTCTTTTGAGCACCAATTTATG
* * * * *
14189487 -TTGTTAAATCA-CTAAAAATTTTCCTGAACATAGGTTA--G-TAAGCACATGTGTGAAAAAATT
1 CTTCTAAAATCACCTAAAAA--TTCTTGAACATAGGTTATTGTTTAGCACATTTGTGAAAAAATT
* * *
14189547 CAACCTCAAATTCTCCTC-CTAAGTGATTTAAAATCTAGCTTGAAA
64 CAAAC-CAAATTCTCATCTC-AAGTGATTCAAAAT-TAGCTTGAAA
14189592 ATCATTGTGA
Statistics
Matches: 244, Mismatches: 32, Indels: 22
0.82 0.11 0.07
Matches are distributed among these distances:
174 2 0.01
175 46 0.19
176 11 0.05
178 6 0.02
179 33 0.14
180 145 0.59
181 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.36
Consensus pattern (177 bp):
CTTCTAAAATCACCTAAAAATTCTTGAACATAGGTTATTGTTTAGCACATTTGTGAAAAAATTCA
AACCAAATTCTCATCTCAAGTGATTCAAAATTAGCTTGAAATGCTGCCTACACAACTTTAAGAAA
TTCTAAACATGGCTTCAGTTTTTAATTCTTTTGAGCACCAATTTATG
Found at i:14190822 original size:23 final size:23
Alignment explanation
Indices: 14190795--14190843 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
14190785 AAATCATACC
*
14190795 ATGTAAAAGT-TATCATGTAATAA
1 ATGTAAAA-TATATCATGCAATAA
14190818 ATGTAAAATCATATCATGCAATAA
1 ATGTAAAAT-ATATCATGCAATAA
14190842 AT
1 AT
14190844 CATACAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 1 0.04
23 8 0.35
24 14 0.61
ACGTcount: A:0.49, C:0.08, G:0.10, T:0.33
Consensus pattern (23 bp):
ATGTAAAATATATCATGCAATAA
Found at i:14190845 original size:17 final size:17
Alignment explanation
Indices: 14190823--14190923 Score: 63
Period size: 17 Copynumber: 6.1 Consensus size: 17
14190813 AATAAATGTA
14190823 AAATCATATCATGCAAT
1 AAATCATATCATGCAAT
* *
14190840 AAATCATA-CAAT-AAACA
1 AAATCATATC-ATGCAA-T
*
14190857 AAATCATATCATGCAAA
1 AAATCATATCATGCAAT
* **
14190874 AAATCAT-GCATTAATAT
1 AAATCATATCATGCA-AT
14190891 AAATCATA-CAATGCAA-
1 AAATCATATC-ATGCAAT
14190907 AAAT--TATCATGCAAT
1 AAATCATATCATGCAAT
14190922 AA
1 AA
14190924 TATAATACCA
Statistics
Matches: 66, Mismatches: 9, Indels: 20
0.69 0.09 0.21
Matches are distributed among these distances:
14 8 0.12
15 3 0.05
16 11 0.17
17 38 0.58
18 6 0.09
ACGTcount: A:0.53, C:0.16, G:0.05, T:0.26
Consensus pattern (17 bp):
AAATCATATCATGCAAT
Found at i:14190895 original size:34 final size:34
Alignment explanation
Indices: 14190768--14190928 Score: 137
Period size: 34 Copynumber: 4.5 Consensus size: 34
14190758 AAATATCAAC
* * *
14190768 AATCATACAATAATATCAAATCATACCATGTAAAA
1 AATCATGCAATAATAT-AAATCATATCATGCAAAA
* * * *
14190803 GTTATCATGTAATAAATGTAAAATCATATCATGCAATA
1 --AATCATGCAAT-AATAT-AAATCATATCATGCAAAA
* *
14190841 AATCATACAATAA-ACAAAATCATATCATGCAAAA
1 AATCATGCAATAATA-TAAATCATATCATGCAAAA
*
14190875 AATCATGCATTAATATAAATCATA-CAATGCAAAA
1 AATCATGCAATAATATAAATCATATC-ATGCAAAA
14190909 ATTATCATGCAATAATATAA
1 A--ATCATGCAATAATATAA
14190929 TACCATAAAA
Statistics
Matches: 100, Mismatches: 18, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
33 1 0.01
34 45 0.45
35 3 0.03
36 24 0.24
37 8 0.08
38 19 0.19
ACGTcount: A:0.52, C:0.14, G:0.06, T:0.28
Consensus pattern (34 bp):
AATCATGCAATAATATAAATCATATCATGCAAAA
Found at i:14191013 original size:42 final size:42
Alignment explanation
Indices: 14190950--14191069 Score: 120
Period size: 47 Copynumber: 2.8 Consensus size: 42
14190940 TCATTTATGC
* *
14190950 AAATATA-T-ATAATAATGCAATCAAATATAATCACATAAAT
1 AAATATATTAATAATCATGCAATCAAATATAATCACACAAAT
*
14190990 AAATATATTAATAATCATGCAATCAAATTAAATAGAATCATACAAAT
1 AAATATATTAATAATCATGCAATCAAA-T--AT--AATCACACAAAT
*
14191037 AAATATATTAATAA-CATGCGATCACACATATAA
1 AAATATATTAATAATCATGCAATCA-A-ATATAA
14191070 ATATATTAGG
Statistics
Matches: 67, Mismatches: 4, Indels: 15
0.78 0.05 0.17
Matches are distributed among these distances:
40 7 0.10
41 1 0.01
42 16 0.24
43 3 0.04
45 4 0.06
46 9 0.13
47 26 0.39
48 1 0.01
ACGTcount: A:0.55, C:0.12, G:0.04, T:0.29
Consensus pattern (42 bp):
AAATATATTAATAATCATGCAATCAAATATAATCACACAAAT
Found at i:14191037 original size:47 final size:46
Alignment explanation
Indices: 14190972--14191060 Score: 133
Period size: 47 Copynumber: 1.9 Consensus size: 46
14190962 TAATGCAATC
* *
14190972 AAATATAATCACATAAATAAATATATTAATAATCATGCAATCAAATT
1 AAATAGAATCACACAAATAAATATATTAATAA-CATGCAATCAAATT
* *
14191019 AAATAGAATCATACAAATAAATATATTAATAACATGCGATCA
1 AAATAGAATCACACAAATAAATATATTAATAACATGCAATCA
14191061 CACATATAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
46 9 0.24
47 29 0.76
ACGTcount: A:0.55, C:0.11, G:0.04, T:0.29
Consensus pattern (46 bp):
AAATAGAATCACACAAATAAATATATTAATAACATGCAATCAAATT
Found at i:14191184 original size:32 final size:33
Alignment explanation
Indices: 14191137--14191198 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 33
14191127 TAAATTCACA
*
14191137 CAAATATATTAATCATGCAAATAAAATATTGGG
1 CAAATAAATTAATCATGCAAATAAAATATTGGG
*
14191170 CAAATAAATT-ATCATGCAAATATAATATT
1 CAAATAAATTAATCATGCAAATAAAATATT
14191199 AGTCATGCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 18 0.67
33 9 0.33
ACGTcount: A:0.50, C:0.10, G:0.08, T:0.32
Consensus pattern (33 bp):
CAAATAAATTAATCATGCAAATAAAATATTGGG
Found at i:14191188 original size:16 final size:16
Alignment explanation
Indices: 14191137--14191210 Score: 58
Period size: 16 Copynumber: 4.3 Consensus size: 16
14191127 TAAATTCACA
*
14191137 CAAATATATTAATCATG
1 CAAATAAATT-ATCATG
* ***
14191154 CAAATAAAATATTGGG
1 CAAATAAATTATCATG
14191170 CAAATAAATTATCATG
1 CAAATAAATTATCATG
14191186 CAAATATAATATTAGTCATG
1 C-AA-ATAA-ATTA-TCATG
14191206 CAAAT
1 CAAAT
14191211 TTATGCAAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
16 16 0.36
17 10 0.23
18 6 0.14
19 6 0.14
20 6 0.14
ACGTcount: A:0.49, C:0.11, G:0.09, T:0.31
Consensus pattern (16 bp):
CAAATAAATTATCATG
Found at i:14191206 original size:20 final size:18
Alignment explanation
Indices: 14191173--14191210 Score: 58
Period size: 20 Copynumber: 2.0 Consensus size: 18
14191163 TATTGGGCAA
14191173 ATAAATTATCATGCAAAT
1 ATAAATTATCATGCAAAT
14191191 ATAATATTAGTCATGCAAAT
1 ATAA-ATTA-TCATGCAAAT
14191211 TTATGCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 4 0.22
20 10 0.56
ACGTcount: A:0.47, C:0.11, G:0.08, T:0.34
Consensus pattern (18 bp):
ATAAATTATCATGCAAAT
Found at i:14191847 original size:13 final size:12
Alignment explanation
Indices: 14191815--14191853 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
14191805 TTGACTAAAA
14191815 AAAC-AAAAATT
1 AAACTAAAAATT
14191826 AAACTAAAAATT
1 AAACTAAAAATT
14191838 AAACTAAAAAATT
1 AAACT-AAAAATT
14191851 AAA
1 AAA
14191854 ACAATTTAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 4 0.15
12 12 0.46
13 10 0.38
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.21
Consensus pattern (12 bp):
AAACTAAAAATT
Found at i:14192237 original size:39 final size:40
Alignment explanation
Indices: 14192194--14192270 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
14192184 CAACTTTGAG
*
14192194 AAAATAAAGTACTC-CCCACCAAGGCCTCAACTTAAAAAA
1 AAAATAAAGAACTCTCCCACCAAGGCCTCAACTTAAAAAA
* * * *
14192233 AAAATAAGGAACTCTTCCATCAAGGCTTCAACTTAAAA
1 AAAATAAAGAACTCTCCCACCAAGGCCTCAACTTAAAA
14192271 CTTTTGAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
39 12 0.38
40 20 0.62
ACGTcount: A:0.47, C:0.25, G:0.09, T:0.19
Consensus pattern (40 bp):
AAAATAAAGAACTCTCCCACCAAGGCCTCAACTTAAAAAA
Found at i:14192320 original size:43 final size:43
Alignment explanation
Indices: 14192268--14192413 Score: 197
Period size: 43 Copynumber: 3.4 Consensus size: 43
14192258 CTTCAACTTA
* *
14192268 AAACTTTTGAAAAATAAAATGGTCCCCCATAACTGAGGCTTTG
1 AAACTTTTGAAAAATAAAATGCTCCCTCATAACTGAGGCTTTG
* * * *
14192311 AAACTTTTGAAAAATAAAATGCTTCCTCACAACTGAAGTTTTG
1 AAACTTTTGAAAAATAAAATGCTCCCTCATAACTGAGGCTTTG
* *
14192354 AAAC-TTTGAAAAATAAAATGCTCCCTCATAATTGAGTCTTTG
1 AAACTTTTGAAAAATAAAATGCTCCCTCATAACTGAGGCTTTG
*
14192396 AATCTTTTG-AAAATAAAA
1 AAACTTTTGAAAAATAAAA
14192414 AGAGATCATT
Statistics
Matches: 89, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
42 44 0.49
43 45 0.51
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (43 bp):
AAACTTTTGAAAAATAAAATGCTCCCTCATAACTGAGGCTTTG
Found at i:14196560 original size:8 final size:8
Alignment explanation
Indices: 14196547--14196579 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
14196537 ATGTGTATGT
14196547 ATGAATGC
1 ATGAATGC
14196555 ATGAATGC
1 ATGAATGC
*
14196563 ATGAATGT
1 ATGAATGC
14196571 ATGAATGC
1 ATGAATGC
14196579 A
1 A
14196580 ATAAAGAGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.27
Consensus pattern (8 bp):
ATGAATGC
Found at i:14198924 original size:24 final size:24
Alignment explanation
Indices: 14198896--14198982 Score: 88
Period size: 24 Copynumber: 3.7 Consensus size: 24
14198886 ATGCAAAAGT
*
14198896 TATCATGTAATAAATATAAAATCA
1 TATCATGCAATAAATATAAAATCA
* **
14198920 TATCATGCAACAAATCATGCAAT-A
1 TATCATGCAATAAAT-ATAAAATCA
*
14198944 AATCATGCAAT-AATATAAAATCA
1 TATCATGCAATAAATATAAAATCA
* *
14198967 TACCATGTAATAAATA
1 TATCATGCAATAAATA
14198983 ATGCAATAAT
Statistics
Matches: 49, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
22 5 0.10
23 12 0.24
24 27 0.55
25 5 0.10
ACGTcount: A:0.52, C:0.14, G:0.06, T:0.29
Consensus pattern (24 bp):
TATCATGCAATAAATATAAAATCA
Found at i:14198954 original size:12 final size:12
Alignment explanation
Indices: 14198921--14198956 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
14198911 ATAAAATCAT
*
14198921 ATCATGCAACAA
1 ATCATGCAATAA
14198933 ATCATGCAATAA
1 ATCATGCAATAA
14198945 ATCATGCAATAA
1 ATCATGCAATAA
14198957 TATAAAATCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.50, C:0.19, G:0.08, T:0.22
Consensus pattern (12 bp):
ATCATGCAATAA
Found at i:14198962 original size:47 final size:48
Alignment explanation
Indices: 14198897--14198991 Score: 138
Period size: 47 Copynumber: 2.0 Consensus size: 48
14198887 TGCAAAAGTT
* * *
14198897 ATCATGTAATAAATATAAAATCATATCATGCAACAAATCATGCAATAA
1 ATCATGCAATAAATATAAAATCATACCATGCAACAAATAATGCAATAA
* *
14198945 ATCATGCAAT-AATATAAAATCATACCATGTAATAAATAATGCAATAA
1 ATCATGCAATAAATATAAAATCATACCATGCAACAAATAATGCAATAA
14198992 TATAAAATCG
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
47 33 0.79
48 9 0.21
ACGTcount: A:0.53, C:0.14, G:0.06, T:0.27
Consensus pattern (48 bp):
ATCATGCAATAAATATAAAATCATACCATGCAACAAATAATGCAATAA
Found at i:14198966 original size:18 final size:18
Alignment explanation
Indices: 14198943--14199000 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
14198933 ATCATGCAAT
14198943 AAATCATGCAATAATATA
1 AAATCATGCAATAATATA
* * *
14198961 AAATCATACCAT-GTA-A
1 AAATCATGCAATAATATA
*
14198977 TAAATAATGCAATAATATA
1 -AAATCATGCAATAATATA
14198996 AAATC
1 AAATC
14199001 GTACCATGCA
Statistics
Matches: 29, Mismatches: 8, Indels: 6
0.67 0.19 0.14
Matches are distributed among these distances:
16 1 0.03
17 11 0.38
18 16 0.55
19 1 0.03
ACGTcount: A:0.55, C:0.12, G:0.05, T:0.28
Consensus pattern (18 bp):
AAATCATGCAATAATATA
Found at i:14198981 original size:35 final size:35
Alignment explanation
Indices: 14198935--14199033 Score: 135
Period size: 35 Copynumber: 2.8 Consensus size: 35
14198925 TGCAACAAAT
14198935 CATGCAATAAATCATGCAATAATATAAAATCATAC
1 CATGCAATAAATCATGCAATAATATAAAATCATAC
* * *
14198970 CATGTAATAAATAATGCAATAATATAAAATCGTAC
1 CATGCAATAAATCATGCAATAATATAAAATCATAC
* *
14199005 CATGCAAAAATTATCATGTAATAATATAA
1 CATGCAATAA--ATCATGCAATAATATAA
14199034 GACAATAAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
35 40 0.73
37 15 0.27
ACGTcount: A:0.52, C:0.13, G:0.07, T:0.28
Consensus pattern (35 bp):
CATGCAATAAATCATGCAATAATATAAAATCATAC
Found at i:14199119 original size:42 final size:43
Alignment explanation
Indices: 14199065--14199155 Score: 121
Period size: 47 Copynumber: 2.0 Consensus size: 43
14199055 AAATATATAC
*
14199065 AATCATGCAATC-AAATATAATCACATAAATAAATATATTAAT
1 AATCATGCAATCAAAATATAATCACACAAATAAATATATTAAT
*
14199107 AATCATGCAATCAAATTAAATATAATCATACAAATAAATATATTAAT
1 AATCATGCAATC--A--AAATATAATCACACAAATAAATATATTAAT
14199154 AA
1 AA
14199156 ATCACTCAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
42 12 0.29
47 30 0.71
ACGTcount: A:0.56, C:0.11, G:0.02, T:0.31
Consensus pattern (43 bp):
AATCATGCAATCAAAATATAATCACACAAATAAATATATTAAT
Found at i:14199159 original size:25 final size:25
Alignment explanation
Indices: 14199091--14199207 Score: 93
Period size: 25 Copynumber: 4.6 Consensus size: 25
14199081 ATAATCACAT
*
14199091 AAATAAATATATTAAT-AATCATGC
1 AAATAAATATATTAATAAATCATAC
14199115 -AATCAAAT-TA--AATATAATCATAC
1 AAAT-AAATATATTAATA-AATCATAC
14199138 AAATAAATATATTAATAAATCACT-C
1 AAATAAATATATTAATAAATCA-TAC
*
14199163 AAATAAATATATTTATAACATGCAATCAC
1 AAATAAATATATTAATAA-AT-C-AT-AC
14199192 ACACATAAATATATTA
1 A-A-ATAAATATATTA
14199208 GGTAATCAAT
Statistics
Matches: 75, Mismatches: 3, Indels: 23
0.74 0.03 0.23
Matches are distributed among these distances:
21 3 0.04
23 16 0.21
24 9 0.12
25 23 0.31
26 7 0.09
27 2 0.03
28 1 0.01
29 2 0.03
30 1 0.01
31 11 0.15
ACGTcount: A:0.55, C:0.12, G:0.02, T:0.32
Consensus pattern (25 bp):
AAATAAATATATTAATAAATCATAC
Found at i:14203615 original size:19 final size:19
Alignment explanation
Indices: 14203588--14203625 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14203578 TTTCTATTGC
*
14203588 ATTCTATCTCATGTTCAAT
1 ATTCCATCTCATGTTCAAT
14203607 ATTCCATCTCATGTTCAAT
1 ATTCCATCTCATGTTCAAT
14203626 CAAAATTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.24, G:0.05, T:0.45
Consensus pattern (19 bp):
ATTCCATCTCATGTTCAAT
Found at i:14210668 original size:16 final size:17
Alignment explanation
Indices: 14210638--14210670 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
14210628 AGTACTCAAA
*
14210638 TTAAAAGCGATTTAAAT
1 TTAAAAGCGACTTAAAT
14210655 TTAAAA-CGACTTAAAT
1 TTAAAAGCGACTTAAAT
14210671 CTAAGATGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.33
Consensus pattern (17 bp):
TTAAAAGCGACTTAAAT
Found at i:14212582 original size:2 final size:2
Alignment explanation
Indices: 14212575--14212608 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
14212565 GATTATTTCT
14212575 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14212609 AAAGAGAGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14212765 original size:19 final size:17
Alignment explanation
Indices: 14212736--14212777 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
14212726 TAAATCTATT
*
14212736 AAAATTA-ATTATTAAA
1 AAAATTATATAATTAAA
*
14212752 AATA-TATATAATTAAA
1 AAAATTATATAATTAAA
14212768 AAAATTATAT
1 AAAATTATAT
14212778 TAAATAAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
15 2 0.10
16 14 0.67
17 5 0.24
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
AAAATTATATAATTAAA
Found at i:14212781 original size:14 final size:14
Alignment explanation
Indices: 14212745--14212787 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
14212735 TAAAATTAAT
*
14212745 TATTAAAAATATATA
1 TATTAAAAAAAT-TA
14212760 TAATTAAAAAAATTA
1 T-ATTAAAAAAATTA
*
14212775 TATTAAATAAATT
1 TATTAAAAAAATT
14212788 GATCTCTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 11 0.44
15 4 0.16
16 10 0.40
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
TATTAAAAAAATTA
Found at i:14220212 original size:16 final size:16
Alignment explanation
Indices: 14220191--14220227 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
14220181 CATAATTAAA
*
14220191 AATAATTTAAAAAATT
1 AATAATATAAAAAATT
*
14220207 AATAATATATAAAATT
1 AATAATATAAAAAATT
14220223 AATAA
1 AATAA
14220228 AAAAATGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AATAATATAAAAAATT
Found at i:14227467 original size:17 final size:17
Alignment explanation
Indices: 14227423--14227467 Score: 67
Period size: 17 Copynumber: 2.7 Consensus size: 17
14227413 TCATTTACTC
14227423 TTTTTCTT-TTTTTGTT
1 TTTTTCTTCTTTTTGTT
14227439 TTTTT-TTACTTTTTGTT
1 TTTTTCTT-CTTTTTGTT
14227456 TTTTTCTTCTTT
1 TTTTTCTTCTTT
14227468 ATTATCTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 2 0.08
16 5 0.19
17 17 0.65
18 2 0.08
ACGTcount: A:0.02, C:0.09, G:0.04, T:0.84
Consensus pattern (17 bp):
TTTTTCTTCTTTTTGTT
Found at i:14227868 original size:7 final size:7
Alignment explanation
Indices: 14227835--14227867 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
14227825 CCAATCTTTC
14227835 TTTTGTA
1 TTTTGTA
14227842 TTTTGTA
1 TTTTGTA
14227849 TTTTGTA
1 TTTTGTA
*
14227856 TTTTGCA
1 TTTTGTA
14227863 TTTTG
1 TTTTG
14227868 CCTTTTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.12, C:0.03, G:0.15, T:0.70
Consensus pattern (7 bp):
TTTTGTA
Found at i:14228770 original size:29 final size:29
Alignment explanation
Indices: 14228712--14228771 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
14228702 TATGTGTTAT
* *
14228712 TTTAATAAAATTATTATTTAATATTTTAA
1 TTTAATAAAAATATTATTTAATATTATAA
14228741 TTTAATAAAAATAGTATATTT-ATA-TATAA
1 TTTAATAAAAATA-T-TATTTAATATTATAA
14228770 TT
1 TT
14228772 AAAATATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 18 0.67
30 4 0.15
31 5 0.19
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (29 bp):
TTTAATAAAAATATTATTTAATATTATAA
Found at i:14229633 original size:18 final size:17
Alignment explanation
Indices: 14229588--14229633 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
14229578 TATTTTTTCA
*
14229588 TTTTTTCTTTGTTTATT
1 TTTTTTCTTTTTTTATT
* *
14229605 ATTTTTCTTTTTATTGTT
1 TTTTTTCTTTTT-TTATT
14229623 TTTTTTCTTTT
1 TTTTTTCTTTT
14229634 ACTAATTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 10 0.42
18 14 0.58
ACGTcount: A:0.07, C:0.07, G:0.04, T:0.83
Consensus pattern (17 bp):
TTTTTTCTTTTTTTATT
Found at i:14229634 original size:17 final size:17
Alignment explanation
Indices: 14229588--14229644 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 17
14229578 TATTTTTTCA
14229588 TTTTTTCTTTGT-TTATT
1 TTTTTTCTTT-TATTATT
* *
14229605 ATTTTTCTTTTTATTGTT
1 TTTTTTC-TTTTATTATT
*
14229623 TTTTTTCTTTTACTAATT
1 TTTTTTCTTTTA-TTATT
14229641 TTTT
1 TTTT
14229645 AAATAAAAAG
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
17 12 0.38
18 20 0.62
ACGTcount: A:0.11, C:0.07, G:0.04, T:0.79
Consensus pattern (17 bp):
TTTTTTCTTTTATTATT
Found at i:14230551 original size:17 final size:17
Alignment explanation
Indices: 14230531--14230578 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
14230521 TTAATTTTCT
14230531 TTTTTTTCTTTTTTGTG
1 TTTTTTTCTTTTTTGTG
*
14230548 TTTTTTT-TTATTTTTTG
1 TTTTTTTCTT-TTTTGTG
*
14230565 TTTTCTTACTTTTT
1 TTTT-TTTCTTTTT
14230579 AAAAAATATT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 2 0.08
17 17 0.65
18 5 0.19
19 2 0.08
ACGTcount: A:0.04, C:0.06, G:0.06, T:0.83
Consensus pattern (17 bp):
TTTTTTTCTTTTTTGTG
Found at i:14230592 original size:12 final size:12
Alignment explanation
Indices: 14230575--14230637 Score: 56
Period size: 12 Copynumber: 5.3 Consensus size: 12
14230565 TTTTCTTACT
14230575 TTTTAAAAAATA
1 TTTTAAAAAATA
*
14230587 TTTTAATAAATA
1 TTTTAAAAAATA
**
14230599 TTTTTTAAAAT-
1 TTTTAAAAAATA
* *
14230610 TATAAAAAAATA
1 TTTTAAAAAATA
* *
14230622 TTTTTAAAAAGA
1 TTTTAAAAAATA
14230634 TTTT
1 TTTT
14230638 TATTTATGTG
Statistics
Matches: 38, Mismatches: 12, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
11 7 0.18
12 31 0.82
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (12 bp):
TTTTAAAAAATA
Found at i:14235233 original size:1 final size:1
Alignment explanation
Indices: 14235229--14235256 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
14235219 TTTGGAGAGC
14235229 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
14235257 AAACTTTGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:14236780 original size:32 final size:31
Alignment explanation
Indices: 14236725--14236784 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 31
14236715 AAAAAATAAT
14236725 ATTTTATTAATTTCAAATCAAATCAAATATA
1 ATTTTATTAATTTCAAATCAAATCAAATATA
14236756 ATTTTATATAATATT-AAATCAAATCAAAT
1 ATTTTAT-TAAT-TTCAAATCAAATCAAAT
14236785 TTAAATAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
31 7 0.26
32 18 0.67
33 2 0.07
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (31 bp):
ATTTTATTAATTTCAAATCAAATCAAATATA
Found at i:14238795 original size:21 final size:21
Alignment explanation
Indices: 14238726--14238784 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
14238716 AAAAATAGTG
* * *
14238726 ATAAAAATAAAATTAATTATT
1 ATAATAATAAAATTAAATAAT
* **
14238747 GTAATGGTAAAATTAAATAAT
1 ATAATAATAAAATTAAATAAT
14238768 ATAATAATAAAATTAAA
1 ATAATAATAAAATTAAA
14238785 ATTAATGATA
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (21 bp):
ATAATAATAAAATTAAATAAT
Found at i:14240027 original size:25 final size:25
Alignment explanation
Indices: 14239998--14240049 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
14239988 TAATATAATA
14239998 TAAAAATAACTACATATTAAAGTAT
1 TAAAAATAACTACATATTAAAGTAT
* *
14240023 TAAAATTAACTACATATTAAATTAT
1 TAAAAATAACTACATATTAAAGTAT
14240048 TA
1 TA
14240050 TTCTTTCATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.54, C:0.08, G:0.02, T:0.37
Consensus pattern (25 bp):
TAAAAATAACTACATATTAAAGTAT
Found at i:14242519 original size:17 final size:16
Alignment explanation
Indices: 14242491--14242525 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
14242481 ATTATTTATG
14242491 AATTTAAATATTCATA
1 AATTTAAATATTCATA
*
14242507 AATTTATAATATTTATA
1 AATTTA-AATATTCATA
14242524 AA
1 AA
14242526 CTTAGTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (16 bp):
AATTTAAATATTCATA
Found at i:14243588 original size:25 final size:25
Alignment explanation
Indices: 14243545--14243598 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
14243535 TATATTTATC
* *
14243545 AATTTAAAAATTGTTTATACACTT-T
1 AATTTAAAAATTATCTATACA-TTCT
*
14243570 AATTTAAAAGTTATCTATACATTCT
1 AATTTAAAAATTATCTATACATTCT
14243595 AATT
1 AATT
14243599 ATTATTTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 2 0.08
25 23 0.92
ACGTcount: A:0.41, C:0.09, G:0.04, T:0.46
Consensus pattern (25 bp):
AATTTAAAAATTATCTATACATTCT
Found at i:14243676 original size:1 final size:1
Alignment explanation
Indices: 14243670--14243717 Score: 51
Period size: 1 Copynumber: 48.0 Consensus size: 1
14243660 TATTATTATA
* * * * *
14243670 TTTTTTTTTCTATTTTTTTATTTTTTTATTTTTTTTTCTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
14243718 CCTTCTTCTT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.06, C:0.04, G:0.00, T:0.90
Consensus pattern (1 bp):
T
Found at i:14243685 original size:8 final size:8
Alignment explanation
Indices: 14243651--14243717 Score: 59
Period size: 8 Copynumber: 8.2 Consensus size: 8
14243641 TCATTTTGTA
14243651 TTTTATTAT
1 TTTTATT-T
*
14243660 TATTATTAT
1 TTTTATT-T
14243669 ATTTT-TTT
1 -TTTTATTT
*
14243677 TTCTATTT
1 TTTTATTT
14243685 TTTTATTT
1 TTTTATTT
14243693 TTTTATTT
1 TTTTATTT
14243701 TTTT-TTCT
1 TTTTATT-T
14243709 TTTT-TTT
1 TTTTATTT
14243716 TT
1 TT
14243718 CCTTCTTCTT
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
7 8 0.16
8 30 0.59
9 10 0.20
10 3 0.06
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTATTT
Found at i:14243691 original size:28 final size:28
Alignment explanation
Indices: 14243659--14243716 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
14243649 TATTTTATTA
14243659 TTATTATTATATTTTTTTTTCTATTTTT
1 TTATTATTATATTTTTTTTTCTATTTTT
* * *
14243687 TTATTTTTTTATTTTTTTTTCTTTTTTT
1 TTATTATTATATTTTTTTTTCTATTTTT
14243715 TT
1 TT
14243717 TCCTTCTTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.84
Consensus pattern (28 bp):
TTATTATTATATTTTTTTTTCTATTTTT
Found at i:14243695 original size:18 final size:18
Alignment explanation
Indices: 14243672--14243714 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
14243662 TTATTATATT
*
14243672 TTTTTTTCTATTTTTTTA
1 TTTTTTTATATTTTTTTA
* *
14243690 TTTTTTTATTTTTTTTTC
1 TTTTTTTATATTTTTTTA
14243708 TTTTTTT
1 TTTTTTT
14243715 TTTCCTTCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.07, C:0.05, G:0.00, T:0.88
Consensus pattern (18 bp):
TTTTTTTATATTTTTTTA
Found at i:14244468 original size:20 final size:20
Alignment explanation
Indices: 14244435--14244476 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
14244425 TCTGTTTATC
* *
14244435 AATAGTAAACTATTAATAAT
1 AATAGAAAAATATTAATAAT
*
14244455 AATAGAAAAATATTGATAAT
1 AATAGAAAAATATTAATAAT
14244475 AA
1 AA
14244477 AATATTAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (20 bp):
AATAGAAAAATATTAATAAT
Found at i:14244592 original size:22 final size:22
Alignment explanation
Indices: 14244567--14244611 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
14244557 GCACCACTAT
* * *
14244567 CCAATCCTATCAGACCAATCAC
1 CCAATCCCATCAAACCAACCAC
14244589 CCAATCCCATCAAACCAACCAC
1 CCAATCCCATCAAACCAACCAC
14244611 C
1 C
14244612 TCAGTTCCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.38, C:0.47, G:0.02, T:0.13
Consensus pattern (22 bp):
CCAATCCCATCAAACCAACCAC
Found at i:14246670 original size:29 final size:30
Alignment explanation
Indices: 14246621--14246689 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
14246611 TTTTTTTTAA
*
14246621 ACCCTAAAATCCAAACCTT-AAACCTCAAG
1 ACCCTAAAATCCAAACCTTAAAACATCAAG
* *
14246650 ACCCTAAAAT-CAAATCTTTAAAATATCAAG
1 ACCCTAAAATCCAAA-CCTTAAAACATCAAG
*
14246680 ATCCTAAAAT
1 ACCCTAAAAT
14246690 TAAAACCCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
28 4 0.12
29 13 0.38
30 17 0.50
ACGTcount: A:0.48, C:0.26, G:0.03, T:0.23
Consensus pattern (30 bp):
ACCCTAAAATCCAAACCTTAAAACATCAAG
Found at i:14246848 original size:29 final size:29
Alignment explanation
Indices: 14246762--14246852 Score: 85
Period size: 29 Copynumber: 3.1 Consensus size: 29
14246752 AAACCCTCCA
* * * **
14246762 AACCCTAAAATCGAAATCCCAAACTTTCA
1 AACCATAAAATTGAAATCCAAAACTTTTG
* * *
14246791 AACCTTAAAATT-AAATCCTAAACCCTTTG
1 AACCATAAAATTGAAATCC-AAAACTTTTG
*
14246820 AACCATAAAATTGAAATCCAAAAGTTTTG
1 AACCATAAAATTGAAATCCAAAACTTTTG
14246849 AACC
1 AACC
14246853 CCAAAACTAA
Statistics
Matches: 49, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
28 6 0.12
29 37 0.76
30 6 0.12
ACGTcount: A:0.45, C:0.24, G:0.05, T:0.25
Consensus pattern (29 bp):
AACCATAAAATTGAAATCCAAAACTTTTG
Found at i:14251278 original size:22 final size:21
Alignment explanation
Indices: 14251237--14251278 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
14251227 GGATGAGGCA
*
14251237 TAAAAAAAAAACAAACAAAAG
1 TAAAAAAAAAACAAAAAAAAG
*
14251258 TAAAAAAAAAAGAGAAAAAAA
1 TAAAAAAAAAACA-AAAAAAA
14251279 ACAAACAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.83, C:0.05, G:0.07, T:0.05
Consensus pattern (21 bp):
TAAAAAAAAAACAAAAAAAAG
Found at i:14251705 original size:17 final size:17
Alignment explanation
Indices: 14251683--14251715 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14251673 CAATTAGAAT
14251683 TCAAAAA-AAAGAAAAAA
1 TCAAAAATAAA-AAAAAA
14251700 TCAAAAATAAAAAAAA
1 TCAAAAATAAAAAAAA
14251716 GAAAAAAGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.82, C:0.06, G:0.03, T:0.09
Consensus pattern (17 bp):
TCAAAAATAAAAAAAAA
Found at i:14253013 original size:18 final size:18
Alignment explanation
Indices: 14252987--14253027 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
14252977 TCTTGTATTT
*
14252987 GCATCGACATTTACATTC
1 GCATCGACATTTACATTA
* *
14253005 GCATTGACATTTCCATTA
1 GCATCGACATTTACATTA
14253023 GCATC
1 GCATC
14253028 ATTTGATGAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.34
Consensus pattern (18 bp):
GCATCGACATTTACATTA
Found at i:14253231 original size:41 final size:40
Alignment explanation
Indices: 14253119--14253231 Score: 131
Period size: 41 Copynumber: 2.8 Consensus size: 40
14253109 TTAAAGTTTT
* * * *
14253119 AAAGTCTCTATTTAAAAGGAACCATTTCCAGTCAAGATTTC
1 AAAGCCTCTGTTT-AAAGGAACCATTTTCAATCAAGATTTC
14253160 AAAGCCTCTGTTTAAGAGGAACCATTTTCAATCAAGATTTC
1 AAAGCCTCTGTTTAA-AGGAACCATTTTCAATCAAGATTTC
14253201 AAAAG-CTCTGTTTATAAGGAACC-TTCTTCAA
1 -AAAGCCTCTGTTTA-AAGGAACCATT-TTCAA
14253232 ATAAGACCTT
Statistics
Matches: 64, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
40 4 0.06
41 55 0.86
42 5 0.08
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.32
Consensus pattern (40 bp):
AAAGCCTCTGTTTAAAGGAACCATTTTCAATCAAGATTTC
Found at i:14253672 original size:88 final size:87
Alignment explanation
Indices: 14253476--14253677 Score: 246
Period size: 87 Copynumber: 2.3 Consensus size: 87
14253466 AAGATTTTGA
* * *
14253476 GATT-TGTAAGACCTCCGGGTATAATTTTGATTCATGGTGTTATCTCGATCAATTTTTATCTTTC
1 GATTCTGTAAGACCTCCGGGCATAATTTTGATTCACGATGTTATCTCGATCAATTTTTATCTTTC
* * * *
14253540 GATTTGCGGTGTTATCTCGATC
66 AACTTACGGTGTTATCTCCATC
* ** * *
14253562 GATTCTGTATGACCTCTTGGCATAATTTTGATTTACGATGTTATCTCGATTAATTTCTTATCTTT
1 GATTCTGTAAGACCTCCGGGCATAATTTTGATTCACGATGTTATCTCGATCAATTT-TTATCTTT
14253627 CAACTTACGGTGTTAT-TCCAGTC
65 CAACTTACGGTGTTATCTCCA-TC
* *
14253650 GATTCTGTAAGACATCCGGGCATGATTT
1 GATTCTGTAAGACCTCCGGGCATAATTT
14253678 CTAAGACTTT
Statistics
Matches: 96, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
86 4 0.04
87 46 0.48
88 46 0.48
ACGTcount: A:0.21, C:0.17, G:0.18, T:0.43
Consensus pattern (87 bp):
GATTCTGTAAGACCTCCGGGCATAATTTTGATTCACGATGTTATCTCGATCAATTTTTATCTTTC
AACTTACGGTGTTATCTCCATC
Found at i:14253731 original size:110 final size:110
Alignment explanation
Indices: 14253580--14253787 Score: 281
Period size: 110 Copynumber: 1.9 Consensus size: 110
14253570 ATGACCTCTT
* * * *
14253580 GGCATAATTTTGATTTACGATGTTATCTCGATTAATTTCTTATCTTTCAACTTACGGTGTTATTC
1 GGCATAATTTTGATTCACGATGTTATCCCGATCAATTTCTTATCTTTCAACTTACGGTGTTATCC
* * * *
14253645 CAGTCGATTCTGTAAGACATCCGGGCATGATTTCTAAGACTTTCA
66 CAATCGATTCTATAAGACATCCGAGCATAATTTCTAAGACTTTCA
* * * ** *
14253690 GGCATAATTTTGATTCGCGGTGTTATCCCGATCGATTTCTTATCTTTTGACTTGCGGTGTTATCC
1 GGCATAATTTTGATTCACGATGTTATCCCGATCAATTTCTTATCTTTCAACTTACGGTGTTATCC
*
14253755 CAATCGATTCTATAAGACCTCCGAGCATAATTT
66 CAATCGATTCTATAAGACATCCGAGCATAATTT
14253788 TGATTCACGG
Statistics
Matches: 83, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
110 83 1.00
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (110 bp):
GGCATAATTTTGATTCACGATGTTATCCCGATCAATTTCTTATCTTTCAACTTACGGTGTTATCC
CAATCGATTCTATAAGACATCCGAGCATAATTTCTAAGACTTTCA
Found at i:14253873 original size:197 final size:197
Alignment explanation
Indices: 14253496--14253979 Score: 552
Period size: 197 Copynumber: 2.5 Consensus size: 197
14253486 ACCTCCGGGT
** * * * *
14253496 ATAATTTTGATTCATGGTGTTATCTCGATCAATTT-TTATCTTTCGATTTGCGGTGTTATCTCGA
1 ATAATTTTGATTCGCGGTGTTATCTCGATCGATTTCTTATCTTTTGACTTGCGGTGTTATCTCAA
* * * * * * *
14253560 TCGATTCTGTATGACCTCTTG-GCATAATTTTGATTTACGATGTTATCTCGATTAATTTCTTATC
66 TCGATTCTATAAGACCTC-CGAGCATAATTTTGATTCACGATGTTATCCCGATCAATTTCTTATA
* * * *
14253624 TTTCAACTTACGGTGTTATTCCAGTCGATTCTGTAAGACATCCGGGCATGATTTCTAAGACTTTC
130 TTTCAACTTACGGTGTTATACCAGTCAATTCTGTAAGACATCCAGGCATGATTTCTAAGAC-CTC
14253689 AGGC-
194 A-GCA
* *
14253693 ATAATTTTGATTCGCGGTGTTATCCCGATCGATTTCTTATCTTTTGACTTGCGGTGTTATCCCAA
1 ATAATTTTGATTCGCGGTGTTATCTCGATCGATTTCTTATCTTTTGACTTGCGGTGTTATCTCAA
* *
14253758 TCGATTCTATAAGACCTCCGAGCATAATTTTGATTCACGGTGTTATCCCGATCGA-TTCTT-TAT
66 TCGATTCTATAAGACCTCCGAGCATAATTTTGATTCACGATGTTATCCCGATCAATTTCTTATAT
* ** * *
14253821 TTCTGACTTGTGGTGTTATACC-GATCAATTCTGTAAGACCTCTAGGCATGATTTCTAAGACCTC
131 TTC-AACTTACGGTGTTATACCAG-TCAATTCTGTAAGACATCCAGGCATGATTTCTAAGACCTC
14253885 AGCA
194 AGCA
* * *
14253889 TATAAATTCGATTCGCGGTGTTATCTCGATCGA-TTCATTATTTTTTGAC-TGACGGTGTTATCT
1 -ATAATTTTGATTCGCGGTGTTATCTCGATCGATTTC-TTATCTTTTGACTTG-CGGTGTTATCT
* * *
14253952 CAGTCGATTCTATAAGACTTTCGAGCAT
63 CAATCGATTCTATAAGACCTCCGAGCAT
14253980 GATTCTTAAG
Statistics
Matches: 245, Mismatches: 34, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
195 2 0.01
196 14 0.06
197 159 0.65
198 70 0.29
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.41
Consensus pattern (197 bp):
ATAATTTTGATTCGCGGTGTTATCTCGATCGATTTCTTATCTTTTGACTTGCGGTGTTATCTCAA
TCGATTCTATAAGACCTCCGAGCATAATTTTGATTCACGATGTTATCCCGATCAATTTCTTATAT
TTCAACTTACGGTGTTATACCAGTCAATTCTGTAAGACATCCAGGCATGATTTCTAAGACCTCAG
CA
Found at i:14253991 original size:22 final size:23
Alignment explanation
Indices: 14253957--14254013 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 23
14253947 TATCTCAGTC
14253957 GATTCTATAAGACTTTCGAGCAT
1 GATTCTATAAGACTTTCGAGCAT
*
14253980 GATTCT-TAAGACTTTCGGGCAT
1 GATTCTATAAGACTTTCGAGCAT
*
14254002 GATT-TCTAAGAC
1 GATTCTATAAGAC
14254014 CTCCAGGCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
21 1 0.03
22 25 0.78
23 6 0.19
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (23 bp):
GATTCTATAAGACTTTCGAGCAT
Found at i:14254521 original size:34 final size:34
Alignment explanation
Indices: 14254483--14254553 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
14254473 CAAGTTAACA
* * *
14254483 TTATTC-TCTGATTCATGGTTTAATCTCGATCTCT
1 TTATTCTTC-GATTCACGGTTCAATCCCGATCTCT
*
14254517 TTATTCTTCGATTCGCGGTTCAATCCCGATCTCT
1 TTATTCTTCGATTCACGGTTCAATCCCGATCTCT
14254551 TTA
1 TTA
14254554 ATTCAAAATC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
34 30 0.94
35 2 0.06
ACGTcount: A:0.17, C:0.24, G:0.13, T:0.46
Consensus pattern (34 bp):
TTATTCTTCGATTCACGGTTCAATCCCGATCTCT
Found at i:14254700 original size:171 final size:171
Alignment explanation
Indices: 14254296--14255335 Score: 1106
Period size: 171 Copynumber: 6.1 Consensus size: 171
14254286 TAAGTTGCAG
** * * *
14254296 TTCAATCCAAGTTAATGTCATTTTTTGACTCGCGGTTTAATCTTGATCTATTTATTCTTCGATTC
1 TTCAATCCAAGTTAACATCATTCTTTGACTCGCGGTTTAATCTCGATCTCTTTATTCTTCGATTC
* * * * * * * * *
14254361 ACGGTTAAATCTTGATCTCTTTAATTCAAAGTCGCAGTTTAATCTTGATTATTGCTATCCTCTAA
66 ACGATTCAATCTCGATCTCTTTAATTCAAAATCACAGTTTAATCTTGGTTATTGTTATCCTTTGA
* * * *
14254426 CTCATAGTTTAATCCAG-TCTCCTTATTTTCTTACTTGTGA
131 CTCGTGGTCTAATCCCGATCTCCTTATTTTCTTACTTGTGA
* * * **
14254466 TTCAATCCAAGTTAACATTATTCTCTGATTCATGGTTTAATCTCGATCTCTTTATTCTTCGATTC
1 TTCAATCCAAGTTAACATCATTCTTTGACTCGCGGTTTAATCTCGATCTCTTTATTCTTCGATTC
* * *
14254531 GCGGTTCAATCCCGATCTCTTTAATTCAAAATCACAGTTTAATCTTGGTTATTGTTATCCTTTGA
66 ACGATTCAATCTCGATCTCTTTAATTCAAAATCACAGTTTAATCTTGGTTATTGTTATCCTTTGA
** ** **
14254596 CTCGTGGTCTAATCCCGATCTTTTTATTTTCAAACTCATGA
131 CTCGTGGTCTAATCCCGATCTCCTTATTTTCTTACTTGTGA
* * * * * * *
14254637 TTTAATCCAAGTTAACGTCATTTTTTGACTCGCGATTTAATCTCGGTCTTTTTATTCTTCGATTT
1 TTCAATCCAAGTTAACATCATTCTTTGACTCGCGGTTTAATCTCGATCTCTTTATTCTTCGATTC
* * * * * *
14254702 ACGATTCAATC-CCATTCTCTTTAATTCAAAGTCGCAGTTTAATCTCGGTTGTTGTTATCTTTTG
66 ACGATTCAATCTCGA-TCTCTTTAATTCAAAATCACAGTTTAATCTTGGTTATTGTTATCCTTTG
* * * * *
14254766 ACTTGTGGTCTAATCCCGGTCTCTTTATTTTTTTACTTTTGA
130 ACTCGTGGTCTAATCCCGATCTCCTTATTTTCTTACTTGTGA
* * * * * *
14254808 TTCAATCCAAGTTAACATTATTCTCTGATTCACGGTTTAATC-CTGGTCTCTTTATTCTTTGATT
1 TTCAATCCAAGTTAACATCATTCTTTGACTCGCGGTTTAATCTC-GATCTCTTTATTCTTCGATT
* * * * ** *
14254872 CGCGATTCAAT-TATGATCTCTTTAATTTAAAATTACAGTTTAATCTAAGTTGTTGTTATCCTTT
65 CACGATTCAATCT-CGATCTCTTTAATTCAAAATCACAGTTTAATCTTGGTTATTGTTATCCTTT
* * *
14254936 GACTCATGGTTTAAT-CCTAGTCTCCTTATTTTCTTACTTGTGA
129 GACTCGTGGTCTAATCCCGA-TCTCCTTATTTTCTTACTTGTGA
* * * * * * * *
14254979 CTCAATTCAAGTTAAAATTATTCTTTGATTCGTGGTTTAATCCCGGTCTCTTTATTCTTCGATTC
1 TTCAATCCAAGTTAACATCATTCTTTGACTCGCGGTTTAATCTCGATCTCTTTATTCTTCGATTC
* * *** *
14255044 GCGATTCAATCTCGATCTTTTTAATTCAAAATTGTAGTTTAATCTCGGTTATTGTTATCCTTTGA
66 ACGATTCAATCTCGATCTCTTTAATTCAAAATCACAGTTTAATCTTGGTTATTGTTATCCTTTGA
* **
14255109 CTCGTGGTCTAATCCC-AGT-TACTTATTTTCAGACTTGTGA
131 CTCGTGGTCTAATCCCGA-TCTCCTTATTTTCTTACTTGTGA
* * * *
14255149 TTCAATCCAAGTTAACATCATTTTTTGACTCGCGATTTAATCTCGATCTTTTTATTCTTCGATTT
1 TTCAATCCAAGTTAACATCATTCTTTGACTCGCGGTTTAATCTCGATCTCTTTATTCTTCGATTC
* * * * *
14255214 A-AAGTTCAATCTCGATCTCTTTAATTCAAAGTCACAGTTTAATCTTGATTGTTGTTATCCTCTG
66 ACGA-TTCAATCTCGATCTCTTTAATTCAAAATCACAGTTTAATCTTGGTTATTGTTATCCTTTG
* * * *
14255278 CCTCGTGATTTAATCCCGATCTCCTTATTTTCTTACTTATGA
130 ACTCGTGGTCTAATCCCGATCTCCTTATTTTCTTACTTGTGA
14255320 TTCAATCCAAGTTAAC
1 TTCAATCCAAGTTAAC
14255336 GTTCTCCAAT
Statistics
Matches: 721, Mismatches: 137, Indels: 23
0.82 0.16 0.03
Matches are distributed among these distances:
169 1 0.00
170 265 0.37
171 450 0.62
172 5 0.01
ACGTcount: A:0.23, C:0.20, G:0.12, T:0.45
Consensus pattern (171 bp):
TTCAATCCAAGTTAACATCATTCTTTGACTCGCGGTTTAATCTCGATCTCTTTATTCTTCGATTC
ACGATTCAATCTCGATCTCTTTAATTCAAAATCACAGTTTAATCTTGGTTATTGTTATCCTTTGA
CTCGTGGTCTAATCCCGATCTCCTTATTTTCTTACTTGTGA
Found at i:14254930 original size:342 final size:339
Alignment explanation
Indices: 14254296--14255337 Score: 1241
Period size: 342 Copynumber: 3.1 Consensus size: 339
14254286 TAAGTTGCAG
* * *
14254296 TTCAATCCAAGTTAATGTCATTTTTTGACTCGCGGTTTAATCTTGATCTATTTATTCTTCGATTC
1 TTCAATCCAAGTTAACGTCATTTTTTGACTCGCGGTTTAATCTCGGTCTATTTATTCTTCGATTC
* * * * * * * *
14254361 ACGGTTAAATCTTGATCTCTTTAATTCAAAGTCGCAGTTTAATCTTGATTATTGCTATCCTCTAA
66 ACGATTCAATCTCGATCTCTTTAATTCAAAGTCGCAGTTTAATCTCGGTTATTGTTATCCTTTGA
* * *
14254426 CTCATAGTTTAAT-CCAGTCTCCTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTCT
131 CTCGTGGTCTAATCCCAGTCT-CTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTCT
* * *
14254490 CTGATTCATGGTTTAATCTCGATCTCTTTATTCTTCGATTCGCGGTTCAATCCCGATCTCTTTAA
195 CTGATTCACGGTTTAATCTCGATCTCTTTATTCTTCGATTCGCGATTCAAT-TCGATCTCTTTAA
* * * **
14254555 TTCAAAATCACAGTTTAATCTTGGTTATTGTTATCCTTTGACTCGTGGTCTAATCCCGATCTTTT
259 TTCAAAATCACAGTTTAATC-TAGTTGTTGTTATCCTTTGACTCGTGGTTTAATCCCGATCTCCT
** *
14254620 TATTTTCAAACTCATGA
323 TATTTTCTTACTTATGA
* * * *
14254637 TTTAATCCAAGTTAACGTCATTTTTTGACTCGCGATTTAATCTCGGTCTTTTTATTCTTCGATTT
1 TTCAATCCAAGTTAACGTCATTTTTTGACTCGCGGTTTAATCTCGGTCTATTTATTCTTCGATTC
* * *
14254702 ACGATTCAATC-CCATTCTCTTTAATTCAAAGTCGCAGTTTAATCTCGGTTGTTGTTATCTTTTG
66 ACGATTCAATCTCGA-TCTCTTTAATTCAAAGTCGCAGTTTAATCTCGGTTATTGTTATCCTTTG
* * * *
14254766 ACTTGTGGTCTAATCCCGGTCTCTTTATTTTTTTACTTTTGATTCAATCCAAGTTAACATTATTC
130 ACTCGTGGTCTAATCCCAGTCTC-TTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTC
* * *
14254831 TCTGATTCACGGTTTAATC-CTGGTCTCTTTATTCTTTGATTCGCGATTCAATTATGATCTCTTT
194 TCTGATTCACGGTTTAATCTC-GATCTCTTTATTCTTCGATTCGCGATTCAATT-CGATCTCTTT
* * * *
14254895 AATTTAAAATTACAGTTTAATCTAAGTTGTTGTTATCCTTTGACTCATGGTTTAAT-CCTAGTCT
257 AATTCAAAATCACAGTTTAATCT-AGTTGTTGTTATCCTTTGACTCGTGGTTTAATCCCGA-TCT
*
14254959 CCTTATTTTCTTACTTGTGA
320 CCTTATTTTCTTACTTATGA
* * ** * * * * * *
14254979 CTCAATTCAAGTTAAAATTATTCTTTGATTCGTGGTTTAATCCCGGTCTCTTTATTCTTCGATTC
1 TTCAATCCAAGTTAACGTCATTTTTTGACTCGCGGTTTAATCTCGGTCTATTTATTCTTCGATTC
* * * * *
14255044 GCGATTCAATCTCGATCTTTTTAATTCAAAATTGTAGTTTAATCTCGGTTATTGTTATCCTTTGA
66 ACGATTCAATCTCGATCTCTTTAATTCAAAGTCGCAGTTTAATCTCGGTTATTGTTATCCTTTGA
** * *
14255109 CTCGTGGTCTAATCCCAGT-TACTTATTTTCAGACTTGTGATTCAATCCAAGTTAACATCATTTT
131 CTCGTGGTCTAATCCCAGTCT-CTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTCT
* * * * * ***
14255173 TTGACTCGCGATTTAATCTCGATCTTTTTATTCTTCGATT-TAAAGTTCAATCTCGATCTCTTTA
195 CTGATTCACGGTTTAATCTCGATCTCTTTATTCTTCGATTCGCGA-TTCAAT-TCGATCTCTTTA
* * * * *
14255237 ATTCAAAGTCACAGTTTAATCTTGATTGTTGTTATCCTCTGCCTCGTGATTTAATCCCGATCTCC
258 ATTCAAAATCACAGTTTAATCTAG-TTGTTGTTATCCTTTGACTCGTGGTTTAATCCCGATCTCC
14255302 TTATTTTCTTACTTATGA
322 TTATTTTCTTACTTATGA
14255320 TTCAATCCAAGTTAACGT
1 TTCAATCCAAGTTAACGT
14255338 TCTCCAATTT
Statistics
Matches: 589, Mismatches: 98, Indels: 28
0.82 0.14 0.04
Matches are distributed among these distances:
340 3 0.01
341 290 0.49
342 294 0.50
343 2 0.00
ACGTcount: A:0.23, C:0.20, G:0.12, T:0.45
Consensus pattern (339 bp):
TTCAATCCAAGTTAACGTCATTTTTTGACTCGCGGTTTAATCTCGGTCTATTTATTCTTCGATTC
ACGATTCAATCTCGATCTCTTTAATTCAAAGTCGCAGTTTAATCTCGGTTATTGTTATCCTTTGA
CTCGTGGTCTAATCCCAGTCTCTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTCTC
TGATTCACGGTTTAATCTCGATCTCTTTATTCTTCGATTCGCGATTCAATTCGATCTCTTTAATT
CAAAATCACAGTTTAATCTAGTTGTTGTTATCCTTTGACTCGTGGTTTAATCCCGATCTCCTTAT
TTTCTTACTTATGA
Found at i:14255268 original size:512 final size:512
Alignment explanation
Indices: 14254296--14255335 Score: 1435
Period size: 512 Copynumber: 2.0 Consensus size: 512
14254286 TAAGTTGCAG
** * * * *
14254296 TTCAATCCAAGTTAATGTCATTTTTTGACTCGCGGTTTAATCTTGATCTATTTATTCTTCGATTC
1 TTCAATCCAAGTTAACATCATTCTCTGACTCACGGTTTAATCCTGATCTATTTATTCTTCGATTC
* * * *
14254361 ACGGTTAAATCTTGATCTCTTTAATTCAAAGTCGCAGTTTAATCTTGATTATTGCTATCCTCTAA
66 ACGATTAAATCTTGATCTCTTTAATTCAAAATCACAGTTTAATCTAGATTATTGCTATCCTCTAA
* *
14254426 CTCATAGTTTAATCCAGTCTCCTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTCTC
131 CTCATAGTTTAATCCAGTCTCCTTATTTTCTTACTTGTGACTCAATCCAAGTTAAAATTATTCTC
* *
14254491 TGATTCATGGTTTAATCTCGATCTCTTTATTCTTCGATTCGCGGTTCAATCCCGATCTCTTTAAT
196 TGATTCATGGTTTAATCCCGATCTCTTTATTCTTCGATTCGCGATTCAATCCCGATCTCTTTAAT
* **
14254556 TCAAAATCACAGTTTAATCTTGGTTATTGTTATCCTTTGACTCGTGGTCTAATCCCGATCTTTTT
261 TCAAAATCACAGTTTAATCTCGGTTATTGTTATCCTTTGACTCGTGGTCTAATCCCGATCTACTT
* * *
14254621 ATTTTCAAACTCATGATTTAATCCAAGTTAACGTCATTTTTTGACTCGCGATTTAATCTCGGTCT
326 ATTTTCAAACTCATGATTCAATCCAAGTTAACATCATTTTTTGACTCGCGATTTAATCTCGATCT
* * *
14254686 TTTTATTCTTCGATTTACGATTCAATCCCATTCTCTTTAATTCAAAGTCGCAGTTTAATCTCGGT
391 TTTTATTCTTCGATTTAAGATTCAATCCCATTCTCTTTAATTCAAAGTCACAGTTTAATCTCGAT
* * * * * * * *
14254751 TGTTGTTATCTTTTGACTTGTGGTCTAATCCCGGTCTCTTTATTTTTTTACTTTTGA
456 TGTTGTTATCCTCTGACTCGTGATCTAATCCCGATCTCCTTATTTTCTTACTTATGA
* * * * *
14254808 TTCAATCCAAGTTAACATTATTCTCTGATTCACGGTTTAATCCTGGTCTCTTTATTCTTTGATTC
1 TTCAATCCAAGTTAACATCATTCTCTGACTCACGGTTTAATCCTGATCTATTTATTCTTCGATTC
* * * * * * *
14254873 GCGATTCAAT-TATGATCTCTTTAATTTAAAATTACAGTTTAATCTA-AGTTGTTGTTATCCTTT
66 ACGATTAAATCT-TGATCTCTTTAATTCAAAATCACAGTTTAATCTAGA-TTATTGCTATCCTCT
* * *
14254936 GACTCATGGTTTAATCCTAGTCTCCTTATTTTCTTACTTGTGACTCAATTCAAGTTAAAATTATT
129 AACTCATAGTTTAATCC-AGTCTCCTTATTTTCTTACTTGTGACTCAATCCAAGTTAAAATTATT
* * * * *
14255001 CTTTGATTCGTGGTTTAATCCCGGTCTCTTTATTCTTCGATTCGCGATTCAATCTCGATCTTTTT
193 CTCTGATTCATGGTTTAATCCCGATCTCTTTATTCTTCGATTCGCGATTCAATCCCGATCTCTTT
***
14255066 AATTCAAAATTGTAGTTTAATCTCGGTTATTGTTATCCTTTGACTCGTGGTCTAATCCC-AGT-T
258 AATTCAAAATCACAGTTTAATCTCGGTTATTGTTATCCTTTGACTCGTGGTCTAATCCCGA-TCT
* **
14255129 ACTTATTTTCAGACTTGTGATTCAATCCAAGTTAACATCATTTTTTGACTCGCGATTTAATCTCG
322 ACTTATTTTCAAACTCATGATTCAATCCAAGTTAACATCATTTTTTGACTCGCGATTTAATCTCG
*
14255194 ATCTTTTTATTCTTCGATTTAA-AGTTCAATCTCGA-TCTCTTTAATTCAAAGTCACAGTTTAAT
387 ATCTTTTTATTCTTCGATTTAAGA-TTCAATC-CCATTCTCTTTAATTCAAAGTCACAGTTTAAT
* * *
14255257 CTTGATTGTTGTTATCCTCTGCCTCGTGATTTAATCCCGATCTCCTTATTTTCTTACTTATGA
450 CTCGATTGTTGTTATCCTCTGACTCGTGATCTAATCCCGATCTCCTTATTTTCTTACTTATGA
14255320 TTCAATCCAAGTTAAC
1 TTCAATCCAAGTTAAC
14255336 GTTCTCCAAT
Statistics
Matches: 461, Mismatches: 61, Indels: 12
0.86 0.11 0.02
Matches are distributed among these distances:
511 3 0.01
512 298 0.65
513 160 0.35
ACGTcount: A:0.23, C:0.20, G:0.12, T:0.45
Consensus pattern (512 bp):
TTCAATCCAAGTTAACATCATTCTCTGACTCACGGTTTAATCCTGATCTATTTATTCTTCGATTC
ACGATTAAATCTTGATCTCTTTAATTCAAAATCACAGTTTAATCTAGATTATTGCTATCCTCTAA
CTCATAGTTTAATCCAGTCTCCTTATTTTCTTACTTGTGACTCAATCCAAGTTAAAATTATTCTC
TGATTCATGGTTTAATCCCGATCTCTTTATTCTTCGATTCGCGATTCAATCCCGATCTCTTTAAT
TCAAAATCACAGTTTAATCTCGGTTATTGTTATCCTTTGACTCGTGGTCTAATCCCGATCTACTT
ATTTTCAAACTCATGATTCAATCCAAGTTAACATCATTTTTTGACTCGCGATTTAATCTCGATCT
TTTTATTCTTCGATTTAAGATTCAATCCCATTCTCTTTAATTCAAAGTCACAGTTTAATCTCGAT
TGTTGTTATCCTCTGACTCGTGATCTAATCCCGATCTCCTTATTTTCTTACTTATGA
Found at i:14255388 original size:134 final size:134
Alignment explanation
Indices: 14255218--14255466 Score: 374
Period size: 134 Copynumber: 1.9 Consensus size: 134
14255208 CGATTTAAAG
* * ** *
14255218 TTCAATCTCGATCTCTTTAATTCAAAGTCACAGTTTAATCTTGATTGTTGTTATCCTCTGCCTCG
1 TTCAATCTCGATCTCTTTAAGTCAAAATCACAGTTTAATCTCAATTGTTGTTATCCTCTGACTCG
*
14255283 TGATTTAATCCCGATCTCCTTATTTTCTT-ACTTATGATTCAATCCAAGTTAACGTTCTCCAATT
66 TGATTTAATCCCGATCTCCTCATTTT-TTGACTTATGATTCAATCCAAGTTAACGTTCTCCAATT
14255347 TGCGA
130 TGCGA
* * *
14255352 TTCAATCTCGATCTCTTTAAGTCAAAATCGCAGTTTAATCTCAATTTTTGTTATCCTTTGACTCG
1 TTCAATCTCGATCTCTTTAAGTCAAAATCACAGTTTAATCTCAATTGTTGTTATCCTCTGACTCG
* * *
14255417 TGGTTTAATCCCGGTCTCCTCATTTTTTGACTTGTGATTCAATCCAAGTT
66 TGATTTAATCCCGATCTCCTCATTTTTTGACTTATGATTCAATCCAAGTT
14255467 CAATCTTTGA
Statistics
Matches: 102, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
133 2 0.02
134 100 0.98
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.43
Consensus pattern (134 bp):
TTCAATCTCGATCTCTTTAAGTCAAAATCACAGTTTAATCTCAATTGTTGTTATCCTCTGACTCG
TGATTTAATCCCGATCTCCTCATTTTTTGACTTATGATTCAATCCAAGTTAACGTTCTCCAATTT
GCGA
Found at i:14256933 original size:6 final size:6
Alignment explanation
Indices: 14256923--14256953 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
14256913 GATTATTTTT
*
14256923 AATAAT AATAAA AATAAA AATAAA AATAAA A
1 AATAAA AATAAA AATAAA AATAAA AATAAA A
14256954 TAAGATAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
AATAAA
Found at i:14257261 original size:15 final size:14
Alignment explanation
Indices: 14257225--14257288 Score: 56
Period size: 14 Copynumber: 4.4 Consensus size: 14
14257215 CGTTTTCTTT
14257225 AAACCCTAAAATCC
1 AAACCCTAAAATCC
* *
14257239 AAACCCTAAACTTC
1 AAACCCTAAAATCC
14257253 AAGACCCTAAAATATCC
1 AA-ACCCT-AAA-ATCC
* * *
14257270 AGATCCTAAAATCA
1 AAACCCTAAAATCC
14257284 AAACC
1 AAACC
14257289 TTTCAAAACT
Statistics
Matches: 38, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
14 20 0.53
15 8 0.21
16 7 0.18
17 3 0.08
ACGTcount: A:0.48, C:0.31, G:0.03, T:0.17
Consensus pattern (14 bp):
AAACCCTAAAATCC
Found at i:14257440 original size:29 final size:28
Alignment explanation
Indices: 14257359--14257443 Score: 82
Period size: 29 Copynumber: 3.0 Consensus size: 28
14257349 CTCAAAACCC
* **
14257359 TAAAATTGAAATCCCAAACTTTCAAACCT
1 TAAAATTGAAATCCAAAACTTTTGAA-CT
* *
14257388 TAAAATT-AAATCCTAAACCCTTTGAACT
1 TAAAATTGAAATCC-AAAACTTTTGAACT
*
14257416 ATAAAATTGAAATCCAAAAGTTTTGAAC
1 -TAAAATTGAAATCCAAAACTTTTGAAC
14257444 CCCAAAACTA
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
28 8 0.18
29 31 0.69
30 6 0.13
ACGTcount: A:0.46, C:0.19, G:0.06, T:0.29
Consensus pattern (28 bp):
TAAAATTGAAATCCAAAACTTTTGAACT
Found at i:14257487 original size:15 final size:14
Alignment explanation
Indices: 14257441--14257495 Score: 56
Period size: 15 Copynumber: 3.7 Consensus size: 14
14257431 AAAAGTTTTG
* *
14257441 AACCCCAAAACTAA
1 AACCCTAAAACCAA
14257455 AAGCCCTAAAATCCAA
1 AA-CCCTAAAA-CCAA
*
14257471 AATCCCTCAAACCAA
1 AA-CCCTAAAACCAA
14257486 AACCCTAAAA
1 AACCCTAAAA
14257496 TCCGAATCTT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
14 9 0.26
15 13 0.38
16 12 0.35
ACGTcount: A:0.53, C:0.35, G:0.02, T:0.11
Consensus pattern (14 bp):
AACCCTAAAACCAA
Found at i:14259087 original size:17 final size:18
Alignment explanation
Indices: 14259065--14259108 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
14259055 TTTTTTTTGA
*
14259065 ATTTTTTATATATT-ATT
1 ATTTTTTATATATTGAGT
* *
14259082 ATTTTTTTTATTTTGAGT
1 ATTTTTTATATATTGAGT
14259100 ATTTTTTAT
1 ATTTTTTAT
14259109 TTATGAATGA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.73
Consensus pattern (18 bp):
ATTTTTTATATATTGAGT
Found at i:14259661 original size:30 final size:31
Alignment explanation
Indices: 14259609--14259681 Score: 80
Period size: 31 Copynumber: 2.4 Consensus size: 31
14259599 ACCTAATCCC
*
14259609 CAAACCC-AAAAATCAAAACCCT-AAACTTTT
1 CAAACCCTAAAAATCAAAACCCTAAAAC-TCT
* *
14259639 CAAACCCTAAAATTC-AAGCCCTAAAACTCT
1 CAAACCCTAAAAATCAAAACCCTAAAACTCT
14259669 CTAAACCCTAAAA
1 C-AAACCCTAAAA
14259682 CCAAATCCTA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
30 16 0.43
31 21 0.57
ACGTcount: A:0.48, C:0.32, G:0.01, T:0.19
Consensus pattern (31 bp):
CAAACCCTAAAAATCAAAACCCTAAAACTCT
Found at i:14259679 original size:17 final size:15
Alignment explanation
Indices: 14259624--14259695 Score: 62
Period size: 14 Copynumber: 4.8 Consensus size: 15
14259614 CCAAAAATCA
14259624 AAACCCT-AAACTTTTC
1 AAACCCTAAAAC--TTC
14259640 AAACCCTAAAA-TTC
1 AAACCCTAAAACTTC
*
14259654 AAGCCCTAAAACTCTC
1 AAACCCTAAAACT-TC
14259670 TAAACCCTAAAAC--C
1 -AAACCCTAAAACTTC
*
14259684 AAATCCTAAAAC
1 AAACCCTAAAAC
14259696 CCTTGAAACT
Statistics
Matches: 49, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
13 11 0.22
14 14 0.29
15 1 0.02
16 9 0.18
17 14 0.29
ACGTcount: A:0.46, C:0.32, G:0.01, T:0.21
Consensus pattern (15 bp):
AAACCCTAAAACTTC
Found at i:14259696 original size:21 final size:20
Alignment explanation
Indices: 14259671--14259723 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 20
14259661 AAAACTCTCT
14259671 AAACCCTAAAAC-CAAATCCTA
1 AAACCCTAAAACTCAAA-CC-A
* *
14259692 AAACCCTTGAAACTTAAACCA
1 AAACCC-TAAAACTCAAACCA
14259713 AAACCCTAAAA
1 AAACCCTAAAA
14259724 ATTCAAAATC
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
20 4 0.15
21 13 0.48
22 7 0.26
23 3 0.11
ACGTcount: A:0.53, C:0.30, G:0.02, T:0.15
Consensus pattern (20 bp):
AAACCCTAAAACTCAAACCA
Found at i:14266383 original size:21 final size:21
Alignment explanation
Indices: 14266359--14266409 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
14266349 TGGGGCATCA
14266359 TAAAAAAAAGTAAA-AAAAAAG
1 TAAAAAAAAG-AAACAAAAAAG
* *
14266380 TAAAATAAAGAAACAAAAGAG
1 TAAAAAAAAGAAACAAAAAAG
14266401 TAAAAAAAA
1 TAAAAAAAA
14266410 AATCTCTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 3 0.12
21 23 0.88
ACGTcount: A:0.78, C:0.02, G:0.10, T:0.10
Consensus pattern (21 bp):
TAAAAAAAAGAAACAAAAAAG
Found at i:14268537 original size:3 final size:3
Alignment explanation
Indices: 14268529--14268581 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
14268519 ATGCCTTTGT
14268529 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14268577 TTA TT
1 TTA TT
14268582 TTGTATGCCT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:14271400 original size:15 final size:16
Alignment explanation
Indices: 14271380--14271431 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
14271370 ATGAGGCATT
*
14271380 AAAAAAAAA-TAAAGC
1 AAAAAAAAAGTAAAAC
*
14271395 AAAAAAAAAGTAAAAT
1 AAAAAAAAAGTAAAAC
14271411 AAAAAAAAGAGGTAAAA-
1 AAAAAAAA-A-GTAAAAC
14271428 AAAA
1 AAAA
14271432 TCTCTTTTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
15 9 0.28
16 12 0.38
17 5 0.16
18 6 0.19
ACGTcount: A:0.81, C:0.02, G:0.10, T:0.08
Consensus pattern (16 bp):
AAAAAAAAAGTAAAAC
Found at i:14273496 original size:110 final size:108
Alignment explanation
Indices: 14273353--14273677 Score: 347
Period size: 110 Copynumber: 3.0 Consensus size: 108
14273343 TACCTCAAGG
* * *
14273353 CATAATCTTTAAAACCTCTGGGCATAATTTTGATTCGCGGTGTTGTCCCGATCGATTTCTTATTT
1 CATAATCTTT-AAACCTCCGAGCATAATTTTGATTCGCGATGTTGTCCCGATCGATTTCTTATTT
* * *
14273418 TTTAACTTGCAGTGTTGTACCAGTCAATTCTGTAAGACCTCCGAA
65 TTCAACTTGCGGTGTTGT-CCAGTCGATTCTGTAAGACCTCCGAA
* ** * *
14273463 CATAATCTTTAAGACCTCCGAGTATAATTTTGATTTACGATGTTATCCTGATCGA-TTCTTTATT
1 CATAATCTTTAA-ACCTCCGAGCATAATTTTGATTCGCGATGTTGTCCCGATCGATTTC-TTATT
* **
14273527 TTTCAACTTGTGGTGTTGTCCTAGTCGATTCTGTAAGACCT-CGGG
64 TTTCAACTTGCGGTGTTGTCC-AGTCGATTCTGTAAGACCTCCGAA
* * ** * *
14273572 CATGAT-TTATAATCCTCC-AGGCATAATTTCT-ATTCGTAATGTTGTCTCGATCGATTCCTTAT
1 CATAATCTT-TAAACCTCCGA-GCATAATTT-TGATTCGCGATGTTGTCCCGATCGATTTCTTAT
*
14273634 TTTTCGACTTGCGGTGTTGTCCAGTCGATTCTGTAAGA-CTCCGA
63 TTTTCAACTTGCGGTGTTGTCCAGTCGATTCTGTAAGACCTCCGA
14273678 GCATGATTTC
Statistics
Matches: 179, Mismatches: 28, Indels: 19
0.79 0.12 0.08
Matches are distributed among these distances:
106 2 0.01
107 19 0.11
108 55 0.31
109 20 0.11
110 83 0.46
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.40
Consensus pattern (108 bp):
CATAATCTTTAAACCTCCGAGCATAATTTTGATTCGCGATGTTGTCCCGATCGATTTCTTATTTT
TCAACTTGCGGTGTTGTCCAGTCGATTCTGTAAGACCTCCGAA
Found at i:14274078 original size:37 final size:37
Alignment explanation
Indices: 14274037--14274136 Score: 146
Period size: 37 Copynumber: 2.7 Consensus size: 37
14274027 GTGGTATTGC
* *
14274037 CCCGATCGATTCCTTATTTTTTGACTTGCGGTGTTGT
1 CCCGATCGATTCTTTATTTCTTGACTTGCGGTGTTGT
*
14274074 CCCGATCGATTCTTTATTCCTTGACTTGCGGTGTTGT
1 CCCGATCGATTCTTTATTTCTTGACTTGCGGTGTTGT
* * *
14274111 CCTGGTCGATTCTTTATTTCTCGACT
1 CCCGATCGATTCTTTATTTCTTGACT
14274137 CATAGAGTCG
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 56 1.00
ACGTcount: A:0.11, C:0.24, G:0.20, T:0.45
Consensus pattern (37 bp):
CCCGATCGATTCTTTATTTCTTGACTTGCGGTGTTGT
Found at i:14274379 original size:17 final size:17
Alignment explanation
Indices: 14274358--14274399 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
14274348 AATATTGAAC
14274358 TATTAATAATAATAGAAA
1 TATTAATAATAATA-AAA
* *
14274376 -ATTATTGATAATAAAA
1 TATTAATAATAATAAAA
14274392 TATTAATA
1 TATTAATA
14274400 TTAGTTTAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 3
0.73 0.15 0.12
Matches are distributed among these distances:
16 3 0.16
17 16 0.84
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (17 bp):
TATTAATAATAATAAAA
Found at i:14274546 original size:23 final size:23
Alignment explanation
Indices: 14274490--14274556 Score: 73
Period size: 23 Copynumber: 3.0 Consensus size: 23
14274480 GCACCACTAT
* * *
14274490 CCAATCTCATCAGACCAATCA-C
1 CCAATCCCATCAAACCAACCACC
* *
14274512 CCAGTCCTATCAAACCAACCACC
1 CCAATCCCATCAAACCAACCACC
*
14274535 CCAATCCCATCAAACCAGCCAC
1 CCAATCCCATCAAACCAACCAC
14274557 GCTTGTGACC
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
22 16 0.44
23 20 0.56
ACGTcount: A:0.36, C:0.46, G:0.04, T:0.13
Consensus pattern (23 bp):
CCAATCCCATCAAACCAACCACC
Found at i:14275995 original size:15 final size:14
Alignment explanation
Indices: 14275973--14276119 Score: 77
Period size: 14 Copynumber: 10.2 Consensus size: 14
14275963 TAAAAAAATC
14275973 CAAACCCTAAATTT
1 CAAACCCTAAATTT
*
14275987 CACAACCCTAAAGTT
1 CA-AACCCTAAATTT
* * * *
14276002 GAAACCTTAAAATC
1 CAAACCCTAAATTT
14276016 CAAACCCTAAACTTT
1 CAAACCCTAAA-TTT
* *
14276031 AAAACCCTAAA-AT
1 CAAACCCTAAATTT
*
14276044 CTAAACCCTAAA-AT
1 C-AAACCCTAAATTT
* *
14276058 CAAAAACCT-AATCTC
1 C-AAACCCTAAAT-TT
**
14276073 CAAA-CCTAAAAAT
1 CAAACCCTAAATTT
14276086 CAAAACCCTAAACTTTT
1 C-AAACCCTAAA--TTT
*
14276103 CAAACCCTAAAATT
1 CAAACCCTAAATTT
14276117 CAA
1 CAA
14276120 GCCCCAAAAC
Statistics
Matches: 101, Mismatches: 22, Indels: 20
0.71 0.15 0.14
Matches are distributed among these distances:
13 7 0.07
14 52 0.51
15 30 0.30
16 10 0.10
17 2 0.02
ACGTcount: A:0.48, C:0.29, G:0.01, T:0.22
Consensus pattern (14 bp):
CAAACCCTAAATTT
Found at i:14276015 original size:43 final size:43
Alignment explanation
Indices: 14275967--14276068 Score: 127
Period size: 43 Copynumber: 2.4 Consensus size: 43
14275957 AAATATTAAA
* * *
14275967 AAAATCCAAACCCTAAA-TTTCACAACCCTAAAGT-TGAAACCTT
1 AAAATCCAAACCCTAAACTTT-AAAACCCTAAAATCT-AAACCCT
14276010 AAAATCCAAACCCTAAACTTTAAAACCCTAAAATCTAAACCCT
1 AAAATCCAAACCCTAAACTTTAAAACCCTAAAATCTAAACCCT
* *
14276053 AAAATCAAAAACCTAA
1 AAAATCCAAACCCTAA
14276069 TCTCCAAACC
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
43 48 0.92
44 4 0.08
ACGTcount: A:0.50, C:0.27, G:0.02, T:0.21
Consensus pattern (43 bp):
AAAATCCAAACCCTAAACTTTAAAACCCTAAAATCTAAACCCT
Found at i:14276020 original size:14 final size:14
Alignment explanation
Indices: 14276003--14276097 Score: 84
Period size: 14 Copynumber: 6.7 Consensus size: 14
14275993 CCTAAAGTTG
* *
14276003 AAACCTTAAAATCC
1 AAACCCTAAAATCA
* *
14276017 AAACCCTAAACTTTA
1 AAACCCTAAA-ATCA
*
14276032 AAACCCTAAAATCT
1 AAACCCTAAAATCA
14276046 AAACCCTAAAATCA
1 AAACCCTAAAATCA
* ** *
14276060 AAAACCTAATCTCC
1 AAACCCTAAAATCA
14276074 AAA-CCTAAAAATCA
1 AAACCCT-AAAATCA
14276088 AAACCCTAAA
1 AAACCCTAAA
14276098 CTTTTCAAAC
Statistics
Matches: 63, Mismatches: 15, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
13 3 0.05
14 46 0.73
15 14 0.22
ACGTcount: A:0.53, C:0.28, G:0.00, T:0.19
Consensus pattern (14 bp):
AAACCCTAAAATCA
Done.