Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25818110
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 67000 characters in sequence are not A, C, G, or T
File 74 of 127
Found at i:14276035 original size:29 final size:28
Alignment explanation
Indices: 14275974--14276097 Score: 97
Period size: 28 Copynumber: 4.4 Consensus size: 28
14275964 AAAAAAATCC
* * *
14275974 AAACCCTAAATTTCACAACCCTAAAGTTG
1 AAACCCTAAAATCCA-AACCCTAAAGTTA
* *
14276003 AAACCTTAAAATCCAAACCCTAAACTTTA
1 AAACCCTAAAATCCAAACCCTAAA-GTTA
* * *
14276032 AAACCCTAAAATCTAAACCCTAAAATCA
1 AAACCCTAAAATCCAAACCCTAAAGTTA
* ** * *
14276060 AAAACCTAATCTCCAAA-CCTAAAAATCA
1 AAACCCTAAAATCCAAACCCT-AAAGTTA
14276088 AAACCCTAAA
1 AAACCCTAAA
14276098 CTTTTCAAAC
Statistics
Matches: 78, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
27 3 0.04
28 39 0.50
29 36 0.46
ACGTcount: A:0.50, C:0.28, G:0.02, T:0.20
Consensus pattern (28 bp):
AAACCCTAAAATCCAAACCCTAAAGTTA
Found at i:14276077 original size:28 final size:28
Alignment explanation
Indices: 14275967--14276115 Score: 95
Period size: 29 Copynumber: 5.2 Consensus size: 28
14275957 AAATATTAAA
* *
14275967 AAAATCCAAACCCTAA-ATTTCACAACCCT
1 AAAATCAAAACCCTAATA-TCCA-AACCCT
* ** * *
14275996 AAAGTTGAAACCTTAAAATCCAAACCCT
1 AAAATCAAAACCCTAATATCCAAACCCT
* * * *
14276024 AAACTTTAAAACCCTAAAATCTAAACCCT
1 AAA-ATCAAAACCCTAATATCCAAACCCT
* *
14276053 AAAATCAAAAACCTAATCTCCAAA-CCT
1 AAAATCAAAACCCTAATATCCAAACCCT
* *
14276080 AAAAATCAAAACCCTAAACTTTTCAAACCCT
1 -AAAATCAAAACCCT-AA-TATCCAAACCCT
14276111 AAAAT
1 AAAAT
14276116 TCAAGCCCCA
Statistics
Matches: 96, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
27 3 0.03
28 37 0.39
29 41 0.43
30 12 0.12
31 3 0.03
ACGTcount: A:0.49, C:0.28, G:0.01, T:0.21
Consensus pattern (28 bp):
AAAATCAAAACCCTAATATCCAAACCCT
Found at i:14276109 original size:16 final size:16
Alignment explanation
Indices: 14276088--14276144 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
14276078 CTAAAAATCA
14276088 AAACCCTAAACTTTTC
1 AAACCCTAAACTTTTC
*
14276104 AAACCCTAAA--ATTC
1 AAACCCTAAACTTTTC
* * *
14276118 AAGCCCCAAAACTTTTT
1 AA-ACCCTAAACTTTTC
14276135 AAACCCTAAA
1 AAACCCTAAA
14276145 ACCAAATCCT
Statistics
Matches: 31, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
14 5 0.16
15 6 0.19
16 16 0.52
17 4 0.13
ACGTcount: A:0.44, C:0.30, G:0.02, T:0.25
Consensus pattern (16 bp):
AAACCCTAAACTTTTC
Found at i:14276130 original size:31 final size:31
Alignment explanation
Indices: 14276073--14276145 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 31
14276063 ACCTAATCTC
*
14276073 CAAA-CCTAAAAATCAAAACCCTAAACTTTT
1 CAAACCCTAAAAATCAAAACCCAAAACTTTT
* **
14276103 CAAACCCTAAAATTCAAGCCCCAAAACTTTT
1 CAAACCCTAAAAATCAAAACCCAAAACTTTT
*
14276134 TAAACCCTAAAA
1 CAAACCCTAAAA
14276146 CCAAATCCTA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
30 4 0.11
31 33 0.89
ACGTcount: A:0.48, C:0.29, G:0.01, T:0.22
Consensus pattern (31 bp):
CAAACCCTAAAAATCAAAACCCAAAACTTTT
Found at i:14276194 original size:21 final size:21
Alignment explanation
Indices: 14276135--14276187 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
14276125 AAAACTTTTT
14276135 AAACCCTAAAACCAAATCCTA
1 AAACCCTAAAACCAAATCCTA
*
14276156 AAACCCTTGAAACTCAAA-CC-A
1 AAACCC-TAAAAC-CAAATCCTA
14276177 AAACCCTAAAA
1 AAACCCTAAAA
14276188 ATCCAAAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
20 4 0.14
21 13 0.46
22 7 0.25
23 4 0.14
ACGTcount: A:0.53, C:0.32, G:0.02, T:0.13
Consensus pattern (21 bp):
AAACCCTAAAACCAAATCCTA
Found at i:14277584 original size:13 final size:11
Alignment explanation
Indices: 14277550--14277576 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
14277540 TCAAGTAAAA
14277550 AAAATTTTTTT
1 AAAATTTTTTT
14277561 AAAATTTTTTT
1 AAAATTTTTTT
14277572 AAAAT
1 AAAAT
14277577 ATTATTTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
AAAATTTTTTT
Found at i:14280922 original size:22 final size:22
Alignment explanation
Indices: 14280879--14280922 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
14280869 TGATCTTGTC
* * **
14280879 AAGAAAGAATTAGAAGCTAAAA
1 AAGAAAAAATAAGAAGAGAAAA
14280901 AAGAAAAAATAAGAAGAGAAAA
1 AAGAAAAAATAAGAAGAGAAAA
14280923 TTTAAGACTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.70, C:0.02, G:0.18, T:0.09
Consensus pattern (22 bp):
AAGAAAAAATAAGAAGAGAAAA
Found at i:14283754 original size:155 final size:155
Alignment explanation
Indices: 14283472--14283787 Score: 587
Period size: 155 Copynumber: 2.0 Consensus size: 155
14283462 GATCCTAATG
14283472 CACATTGTGATTATCATTATGCAAACCCAGGTCATTCTACTAAAAATTGTACTGCCCTAGAGAGC
1 CACATTGTGATTATCATTATGCAAACCCAGGTCATTCTACTAAAAATTGTACTGCCCTAGAGAGC
*
14283537 AAAGTGCAATGGTTAATCAACGAAGGGGTGTTAAATTTTGAGACCAACCAACAAGAGACTCCAAA
66 AAAGTGCAATGGTTAATCAACAAAGGGGTGTTAAATTTTGAGACCAACCAACAAGAGACTCCAAA
14283602 TGTTAATAAGAACCCTTTACCAAAC
131 TGTTAATAAGAACCCTTTACCAAAC
*
14283627 CACATTGTGATTATCATTATGGAAACCCAGGTCATTCTACTAAAAATTGTACTGCCCTAGAGAGC
1 CACATTGTGATTATCATTATGCAAACCCAGGTCATTCTACTAAAAATTGTACTGCCCTAGAGAGC
* *
14283692 AAAGTTCAATGGTTAATCAACAAAGGGGTGTTAAATTTTGAGACCAACTAACAAGAGACTCCAAA
66 AAAGTGCAATGGTTAATCAACAAAGGGGTGTTAAATTTTGAGACCAACCAACAAGAGACTCCAAA
*
14283757 TGTTAATAGGAACCCTTTACCAAAC
131 TGTTAATAAGAACCCTTTACCAAAC
14283782 CACATT
1 CACATT
14283788 AGGCCATCGA
Statistics
Matches: 156, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
155 156 1.00
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.26
Consensus pattern (155 bp):
CACATTGTGATTATCATTATGCAAACCCAGGTCATTCTACTAAAAATTGTACTGCCCTAGAGAGC
AAAGTGCAATGGTTAATCAACAAAGGGGTGTTAAATTTTGAGACCAACCAACAAGAGACTCCAAA
TGTTAATAAGAACCCTTTACCAAAC
Found at i:14290250 original size:49 final size:50
Alignment explanation
Indices: 14290193--14290626 Score: 387
Period size: 49 Copynumber: 9.0 Consensus size: 50
14290183 TTTCGAGAAC
*
14290193 AGATGAGATTTTTAAAGTTGTTGAGCCTCTACTTAGAGGA-TCTTTTTCA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGTCTTTTTCA
* * * * *
14290242 AGATGAGATTTTTAAAGTTGTTAAG-CTTTGCTTAGATGTG-CTTTTCCA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGTCTTTTTCA
* * * *
14290290 GGATGATGAATTTTAAAGTTGTTGAACCTCTGCTTAGAGGAGCCTTTTT-A
1 AGATGA-GATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGTCTTTTTCA
* * ** * *
14290340 A-AT----TTTTTAAAGCTGTTAAGTGTCTGCTTAGAGGAGCCTTTTCCA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGTCTTTTTCA
* * * * *
14290385 A-ATAATATTTTTAAAGTTGTTGAGCCTTTGCTTAGAGAAGTTTTTTTC-
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGTCTTTTTCA
* * *
14290433 AGATGAGATTTTTAAAATTGTTAAGCCTTTGCTTAGAGGAGT-TTTTTC-
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGTCTTTTTCA
* * *
14290481 AGATGAAATTTTTAAAGTTGTTGAGCCTCTACTTAGAGGA-ACTTTTTC-
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGTCTTTTTCA
* * * * * *
14290529 ATATGAGATTTTTAAAGTTGTTAAGCTTCTGTTTAGATGAG-CTTTTTTA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGTCTTTTTCA
* ** * * *
14290578 AGATGATAAACTTTAAAGTTGTTGAGCCTTTGCTTAGATGAGTTTTTTT
1 AGATGA-GATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGTCTTTTT
14290627 TTTTAAATTT
Statistics
Matches: 311, Mismatches: 59, Indels: 28
0.78 0.15 0.07
Matches are distributed among these distances:
44 33 0.11
45 4 0.01
48 109 0.35
49 114 0.37
50 41 0.13
51 10 0.03
ACGTcount: A:0.26, C:0.10, G:0.20, T:0.43
Consensus pattern (50 bp):
AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGTCTTTTTCA
Found at i:14290625 original size:98 final size:97
Alignment explanation
Indices: 14290202--14290625 Score: 438
Period size: 98 Copynumber: 4.4 Consensus size: 97
14290192 CAGATGAGAT
*
14290202 TTTTAAAGTTGTTGAGCCTCTACTTAGAGGA-TCTTTTTCAAGATGAGATTTTTAAAGTTGTTAA
1 TTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGT-TTTTTC-AGATGAGATTTTTAAAGTTGTTAA
* * * *
14290266 GCTTTGCTTAGATGTGCTTTTCCAGGATGATGAA
64 GCTTTGCTTAGAGGAGCTTTTCCAAGATGATAAA
* * * *
14290300 TTTTAAAGTTGTTGAACCTCTGCTTAGAGGAGCCTTTTT-A-A--A-TTTTTTAAAGCTGTTAAG
1 TTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAG-TTTTTTCAGATGAGATTTTTAAAGTTGTTAAG
* *
14290360 -TGTCTGCTTAGAGGAGCCTTTTCCAA-ATAAT-AT
65 CT-T-TGCTTAGAGGAG-CTTTTCCAAGATGATAAA
* * *
14290393 TTTTAAAGTTGTTGAGCCTTTGCTTAGAGAAGTTTTTTTCAGATGAGATTTTTAAAATTGTTAAG
1 TTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAG-TTTTTTCAGATGAGATTTTTAAAGTTGTTAAG
* * *
14290458 CCTTTGCTTAGAGGAGTTTTTTC-AGATGA-AAT
65 -CTTTGCTTAGAGGAGCTTTTCCAAGATGATAAA
* ** *
14290490 TTTTAAAGTTGTTGAGCCTCTACTTAGAGGAACTTTTTCATATGAGATTTTTAAAGTTGTTAAGC
1 TTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGTTTTTTCAGATGAGATTTTTAAAGTTGTTAAGC
* * **
14290555 TTCTGTTTAGATGAGCTTTTTTAAGATGATAAA
66 TT-TGCTTAGAGGAGCTTTTCCAAGATGATAAA
* * *
14290588 CTTTAAAGTTGTTGAGCCTTTGCTTAGATGAGTTTTTT
1 TTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGTTTTTT
14290626 TTTTTAAATT
Statistics
Matches: 270, Mismatches: 39, Indels: 34
0.79 0.11 0.10
Matches are distributed among these distances:
92 1 0.00
93 52 0.19
94 16 0.06
95 12 0.04
96 46 0.17
97 46 0.17
98 90 0.33
99 6 0.02
100 1 0.00
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.43
Consensus pattern (97 bp):
TTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGTTTTTTCAGATGAGATTTTTAAAGTTGTTAAGC
TTTGCTTAGAGGAGCTTTTCCAAGATGATAAA
Found at i:14290911 original size:18 final size:18
Alignment explanation
Indices: 14290871--14290917 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
14290861 AAATACCATT
*
14290871 TTATATTTATTATTATTA
1 TTATATTTTTTATTATTA
14290889 TTATATTTTTTATT-TT-
1 TTATATTTTTTATTATTA
14290905 TTATATATTTTTA
1 TTATAT-TTTTTA
14290918 AATTTTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 6 0.22
17 8 0.30
18 13 0.48
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (18 bp):
TTATATTTTTTATTATTA
Found at i:14290913 original size:26 final size:25
Alignment explanation
Indices: 14290868--14290925 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
14290858 TGTAAATACC
* *
14290868 ATTTTATATTTATTATTATTATTAT
1 ATTTTTTATTTATTATTATTATTAA
* *
14290893 ATTTTTTATTTTTTATATATTTTTAA
1 ATTTTTTATTTATTAT-TATTATTAA
14290919 ATTTTTT
1 ATTTTTT
14290926 TTCTTTCTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 14 0.50
26 14 0.50
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (25 bp):
ATTTTTTATTTATTATTATTATTAA
Found at i:14290923 original size:18 final size:18
Alignment explanation
Indices: 14290890--14290924 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14290880 TTATTATTAT
* *
14290890 TATATTTTTTATTTTTTA
1 TATATTTTTAAATTTTTA
14290908 TATATTTTTAAATTTTT
1 TATATTTTTAAATTTTT
14290925 TTTCTTTCTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (18 bp):
TATATTTTTAAATTTTTA
Found at i:14292511 original size:206 final size:203
Alignment explanation
Indices: 14292126--14292520 Score: 444
Period size: 206 Copynumber: 1.9 Consensus size: 203
14292116 AAGAAAAGAA
** ** * *
14292126 AATTTTTATCCGACGATGAGATTTAAAGGTACTCCGAGTAGTGATGCCTACAAAATCTCTAGATG
1 AATTTTTATCAAACGATGAGATTTAAAAATACTCCAAGTAGTGATACCTACAAAATCTCTAGATG
* * *
14292191 AGAAGATTTTTTTAAAATACTACCAATGTATTGGAGTATTTATAAAAAAGTTTTCAATACAATAA
66 AGAAGATTTTTTTAAAATACTACCAATGTATTGAAATATTTATAAAAAAG-CTTCAATACAATAA
* *
14292256 AATTTTTTTTTGTTAATAAAAAATAAAATTAATTAATAATAATAATAAAATAA-TAATATAAATA
130 AATTTTTTTTTGTTAATAAAAAATAAAAATAA-TAATAATAATAATAAAACAATTAATATAAATA
14292320 AGGAAAAAGG
194 AGGAAAAAGG
* * * * *
14292330 AATTTTTATCAAATGATGAGATTCTAAAAATATTCCAAGTAGTGATACTTTACGAAATCTCTAGG
1 AATTTTTATCAAACGATGAGATT-TAAAAATACTCCAAGTAGTGATAC-CTACAAAATCTCTAGA
* * * *
14292395 TGAGAAGATTTTTTTTAAATATTACCAGTGTATTGAAATATTTATAGAAAAA-CTTCAATATAAT
64 TGAGAAGATTTTTTTAAAATACTACCAATGTATTGAAATATTTATA-AAAAAGCTTCAATACAAT
*
14292459 AAAAATTCCTTTTTTCT-TTAA-AAATTTAAATAAAAATAA-AA-AATCA-AATAAAACAATTAA
128 -AAAATT--TTTTTT-TGTTAATAAA---AAATAAAAATAATAATAATAATAATAAAACAATTAA
14292519 TA
186 TA
14292521 AATTTCTAAA
Statistics
Matches: 159, Mismatches: 21, Indels: 19
0.80 0.11 0.10
Matches are distributed among these distances:
204 20 0.13
205 29 0.18
206 69 0.43
207 17 0.11
208 12 0.08
209 1 0.01
210 11 0.07
ACGTcount: A:0.46, C:0.08, G:0.10, T:0.35
Consensus pattern (203 bp):
AATTTTTATCAAACGATGAGATTTAAAAATACTCCAAGTAGTGATACCTACAAAATCTCTAGATG
AGAAGATTTTTTTAAAATACTACCAATGTATTGAAATATTTATAAAAAAGCTTCAATACAATAAA
ATTTTTTTTTGTTAATAAAAAATAAAAATAATAATAATAATAATAAAACAATTAATATAAATAAG
GAAAAAGG
Found at i:14294466 original size:25 final size:25
Alignment explanation
Indices: 14294432--14294525 Score: 64
Period size: 25 Copynumber: 3.4 Consensus size: 25
14294422 TGAAAAGTTG
14294432 AAAATATCAATTTTTCTTGAAAATA
1 AAAATATCAATTTTTCTTGAAAATA
* *
14294457 AAAATTTCAAAAAATGTTTTCTTGAAAAAAGGTT
1 AAAATATC----AAT-TTTTCTTG--AAAA--TA
14294491 AAAATATCAATTTTTCTT-AAAGATA
1 AAAATATCAATTTTTCTTGAAA-ATA
*
14294516 AAAATTTCAA
1 AAAATATCAA
14294526 AAAAAAATAT
Statistics
Matches: 54, Mismatches: 5, Indels: 20
0.68 0.06 0.25
Matches are distributed among these distances:
25 17 0.31
26 3 0.06
27 1 0.02
29 10 0.19
30 11 0.20
32 4 0.07
34 8 0.15
ACGTcount: A:0.49, C:0.07, G:0.06, T:0.37
Consensus pattern (25 bp):
AAAATATCAATTTTTCTTGAAAATA
Found at i:14294469 original size:58 final size:56
Alignment explanation
Indices: 14294406--14294638 Score: 231
Period size: 59 Copynumber: 4.0 Consensus size: 56
14294396 TTAAAATTAA
14294406 AAAAAATATCTTTTGATGAAAAGTTGAAAATATCAATTTTTCTTGAAAATAAAAATTTC
1 AAAAAATAT-TTTTGA-GAAAAGTTGAAAATATCAATTTTTCTT-AAAATAAAAATTTC
* *
14294465 AAAAAATGTTTTCTTGAAAAAAGGTT-AAAATATCAATTTTTCTTAAAGATAAAAATTTC
1 AAAAAAT-ATTT-TTGAGAAAA-GTTGAAAATATCAATTTTTCTTAAA-ATAAAAATTTC
* * *
14294524 AAAAAAAAATATTTTT-AGGAAAAGTTG-AAGTATCAATTTTCCTTAAAATGAAAATTTC
1 ---AAAAAATATTTTTGA-GAAAAGTTGAAAATATCAATTTTTCTTAAAATAAAAATTTC
* * * *
14294582 -AAAAATGTTTTTGAAGAAAAGTTGAAAGTATCAAATTTTCTTAGAAAATAAATATTT
1 AAAAAATATTTTTG-AGAAAAGTTGAAAATATCAATTTTTCTT--AAAATAAAAATTT
14294639 TTCAACAAAA
Statistics
Matches: 148, Mismatches: 12, Indels: 29
0.78 0.06 0.15
Matches are distributed among these distances:
54 11 0.07
55 9 0.06
56 16 0.11
58 24 0.16
59 64 0.43
60 14 0.09
61 3 0.02
62 7 0.05
ACGTcount: A:0.48, C:0.06, G:0.10, T:0.36
Consensus pattern (56 bp):
AAAAAATATTTTTGAGAAAAGTTGAAAATATCAATTTTTCTTAAAATAAAAATTTC
Found at i:14294814 original size:79 final size:79
Alignment explanation
Indices: 14294739--14294917 Score: 256
Period size: 79 Copynumber: 2.3 Consensus size: 79
14294729 AAAAAAGCTA
* * *
14294739 AAAGTA-CTAATTTTCCTTAAAAAATAAAAATTTTTCAAAAA-AATATATTTCAAAAGAAATGTT
1 AAAGTATC-AATTTTTCTTAAAAAATAAAAATTTTTCAAAAAGAAAATATTTCAAAAGAAACG-T
14294802 TTTTAAGGAAAAGTTG
64 TTTTAAGGAAAAGTTG
* *
14294818 AAAGTATCAATTTTTCTTAGAAAAATAAAAATTTTTTAAAAAGAAAATATTTCGAAAGAAACG-T
1 AAAGTATCAATTTTTCTTA-AAAAATAAAAATTTTTCAAAAAGAAAATATTTCAAAAGAAACGTT
*
14294882 TTTGAGGAAAAGTTG
65 TTTAAGGAAAAGTTG
14294897 AAAGTATCAATTTTTCTTAAA
1 AAAGTATCAATTTTTCTTAAA
14294918 TCTTTCCAAT
Statistics
Matches: 91, Mismatches: 6, Indels: 7
0.88 0.06 0.07
Matches are distributed among these distances:
78 2 0.02
79 50 0.55
80 22 0.24
81 17 0.19
ACGTcount: A:0.48, C:0.06, G:0.11, T:0.35
Consensus pattern (79 bp):
AAAGTATCAATTTTTCTTAAAAAATAAAAATTTTTCAAAAAGAAAATATTTCAAAAGAAACGTTT
TTAAGGAAAAGTTG
Found at i:14294842 original size:133 final size:130
Alignment explanation
Indices: 14294525--14294859 Score: 360
Period size: 133 Copynumber: 2.6 Consensus size: 130
14294515 AAAAATTTCA
* * **
14294525 AAAAAAAATATTTTT-AGGAAAAGTTG-AAGTATCAATTTTCCTTAAAATGAAAATTTCAAAAAT
1 AAAAAAAACATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAA--AAAA-TAAAAAAAT
* * * * * * * *
14294588 GTTTTTGAAGAAAAGTTGAAAGTATCAAATTTTCTTAGAAAATAAATATTTTTCAACAAAATATA
63 ATTTTTAAAAAAAAGCTAAAAGTATCAAATTTTCTTAAAAAATAAAAATTTTTCAAAAAAATATA
14294653 TTT
128 TTT
* * *
14294656 AAAAAAAACATTTTTAAGGAAAAGTTTAAAATATCAAATTTTCTTAAATAAAAAATAAAAAAATT
1 AAAAAAAACATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTT-AA-AAAAAATAAAAAAA-T
*
14294721 ATTTTTAAAAAAAAGCTAAAAGTA-CTAATTTTCCTTAAAAAATAAAAATTTTTCAAAAAAATAT
63 ATTTTTAAAAAAAAGCTAAAAGTATCAAATTTT-CTTAAAAAATAAAAATTTTTCAAAAAAATAT
14294785 ATTT
127 ATTT
*** *
14294789 CAAAAGAAATGTTTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTT-AGAAAAAT--AAAAAT-
1 -AAAA-AAAACATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAAAATAAAAAAATA
14294850 TTTTTAAAAA
64 TTTTTAAAAA
14294860 GAAAATATTT
Statistics
Matches: 173, Mismatches: 23, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
128 10 0.06
129 1 0.01
130 5 0.03
131 14 0.08
132 29 0.17
133 71 0.41
134 6 0.03
135 37 0.21
ACGTcount: A:0.51, C:0.06, G:0.08, T:0.35
Consensus pattern (130 bp):
AAAAAAAACATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAAAATAAAAAAATATT
TTTAAAAAAAAGCTAAAAGTATCAAATTTTCTTAAAAAATAAAAATTTTTCAAAAAAATATATTT
Found at i:14297415 original size:21 final size:21
Alignment explanation
Indices: 14297385--14297433 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
14297375 AATAAATATT
14297385 ATTATAAATAATAAGAAAAAAA
1 ATTATAAATAATAA-AAAAAAA
*
14297407 ATTA-AAATAATAAATAAAAA
1 ATTATAAATAATAAAAAAAAA
*
14297427 ATAATAA
1 ATTATAA
14297434 GAAAAAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 9 0.38
21 11 0.46
22 4 0.17
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (21 bp):
ATTATAAATAATAAAAAAAAA
Found at i:14297429 original size:14 final size:15
Alignment explanation
Indices: 14297410--14297443 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
14297400 AAAAAAAATT
*
14297410 AAAATAATAA-ATAA
1 AAAATAATAAGAAAA
14297424 AAAATAATAAGAAAA
1 AAAATAATAAGAAAA
14297439 AAAAT
1 AAAAT
14297444 CACTATAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (15 bp):
AAAATAATAAGAAAA
Found at i:14298213 original size:18 final size:18
Alignment explanation
Indices: 14298190--14298226 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
14298180 ATATTAACTT
*
14298190 ATTATTAAAAAATAGATA
1 ATTATTAAAAAATAAATA
*
14298208 ATTATTATAAAATAAATA
1 ATTATTAAAAAATAAATA
14298226 A
1 A
14298227 AAGTCACTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (18 bp):
ATTATTAAAAAATAAATA
Found at i:14299593 original size:9 final size:9
Alignment explanation
Indices: 14299579--14299604 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
14299569 CAAGTCATTA
14299579 AAAAAAAAG
1 AAAAAAAAG
14299588 AAAAAAAAG
1 AAAAAAAAG
14299597 AAAAAAAA
1 AAAAAAAA
14299605 ATGGTGCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:14301011 original size:10 final size:10
Alignment explanation
Indices: 14300996--14301028 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
14300986 ATGGACACAG
14300996 AAAAAAAAA-
1 AAAAAAAAAC
14301005 AAAAAAAAAC
1 AAAAAAAAAC
*
14301015 AAAACAAAAC
1 AAAAAAAAAC
14301025 AAAA
1 AAAA
14301029 CTCCATTACA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 9 0.41
10 13 0.59
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:14301496 original size:24 final size:24
Alignment explanation
Indices: 14301469--14301528 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 24
14301459 GAATAGAAAC
*
14301469 AATTATTATATGATAAATAG-TTAT
1 AATTATTAAAT-ATAAATAGATTAT
14301493 AATTATTTAAATATAAATAGATTAT
1 AATTA-TTAAATATAAATAGATTAT
*
14301518 TATTCATTAAA
1 AATT-ATTAAA
14301529 ATCATGATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 13 0.42
25 17 0.55
26 1 0.03
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (24 bp):
AATTATTAAATATAAATAGATTAT
Found at i:14302067 original size:14 final size:14
Alignment explanation
Indices: 14302048--14302076 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
14302038 AATTGTAGCT
14302048 AGTAGTAGTATGAA
1 AGTAGTAGTATGAA
14302062 AGTAGTAGTATGAA
1 AGTAGTAGTATGAA
14302076 A
1 A
14302077 TTAATAGGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.28, T:0.28
Consensus pattern (14 bp):
AGTAGTAGTATGAA
Found at i:14305037 original size:5 final size:5
Alignment explanation
Indices: 14305027--14305055 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
14305017 GATTTCAGGA
14305027 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
14305056 GGTCATTAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:14305403 original size:13 final size:14
Alignment explanation
Indices: 14305387--14305426 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
14305377 ATAACACTAA
*
14305387 TTAATATTATAT-T
1 TTAATAATATATAT
14305400 TTAA-AATATATAT
1 TTAATAATATATAT
14305413 TTAATAA-ATATAT
1 TTAATAATATATAT
14305426 T
1 T
14305427 ACTTTTTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
12 6 0.25
13 16 0.67
14 2 0.08
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TTAATAATATATAT
Found at i:14305421 original size:15 final size:15
Alignment explanation
Indices: 14305384--14305425 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
14305374 CTAATAACAC
*
14305384 TAATTAATATTATATT
1 TAATAAATA-TATATT
*
14305400 TTA-AAATATATATT
1 TAATAAATATATATT
14305414 TAATAAATATAT
1 TAATAAATATAT
14305426 TACTTTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
14 8 0.36
15 12 0.55
16 2 0.09
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATAAATATATATT
Found at i:14307243 original size:3 final size:3
Alignment explanation
Indices: 14307235--14307287 Score: 97
Period size: 3 Copynumber: 17.7 Consensus size: 3
14307225 CCTGCTTTGA
*
14307235 TAT TAT TAT TAT TAT TAT TAT TAT TAT TCT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14307283 TAT TA
1 TAT TA
14307288 ATGATGATAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:14308058 original size:21 final size:20
Alignment explanation
Indices: 14308028--14308067 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
14308018 TTTATAATAA
* *
14308028 TAATTTTTTACGTTACTAATT
1 TAATTATTTACATT-CTAATT
14308049 TAATTATTTACATTCTAAT
1 TAATTATTTACATTCTAAT
14308068 AATATGTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.33, C:0.10, G:0.03, T:0.55
Consensus pattern (20 bp):
TAATTATTTACATTCTAATT
Found at i:14308218 original size:20 final size:20
Alignment explanation
Indices: 14308195--14308278 Score: 59
Period size: 20 Copynumber: 4.2 Consensus size: 20
14308185 TAATCTCACA
*
14308195 TTTTTATGTG-AACACATATT
1 TTTTTATGTGTAACA-ATAAT
* *
14308215 TTTTTATTTGTAATAATAAT
1 TTTTTATGTGTAACAATAAT
*
14308235 TTTTTATGTTGTCAAC-TTAAT
1 TTTTTATG-TGT-AACAATAAT
* *
14308256 TATTTACGT-TAA-AATAAT
1 TTTTTATGTGTAACAATAAT
14308274 TTTTT
1 TTTTT
14308279 TTACACTTGT
Statistics
Matches: 50, Mismatches: 10, Indels: 10
0.71 0.14 0.14
Matches are distributed among these distances:
18 10 0.20
19 1 0.02
20 21 0.42
21 16 0.32
22 2 0.04
ACGTcount: A:0.31, C:0.06, G:0.07, T:0.56
Consensus pattern (20 bp):
TTTTTATGTGTAACAATAAT
Found at i:14309072 original size:219 final size:213
Alignment explanation
Indices: 14308410--14309179 Score: 609
Period size: 219 Copynumber: 3.5 Consensus size: 213
14308400 TACTTACAAT
* * * * *
14308410 ACTTTTAACACATTTTACGTTAAATTATGCTAATTTTACTATTATTTTTACTTCTTTACGTTAAC
1 ACTTCTAACACATTTTACGTAAAATTAT-C-AATTTTACGATTATTTTTCCTT-TTTATGTTAAC
* * **
14308475 ACTTATTTTTAAGTTTAGAATTATTTTTTATTTATAATAATATTTTTTTACGTTTTCAATTTAAT
63 ACTTATTTTTATGTTTAGAATTATTTTTTATTTATAATAATAATTTTTTACGTACT-AA-TTAAT
* * * *
14308540 TATTTATGTTAAAATAAAAT-CTATTACGCTTGTTTTTACATTTT-ATTATATTTAGAGTTATCA
126 TATTTAAGTTATAATAATATCCT-TTACGCTTGTTGTTA-ATTTTCATTATATTTAGA-TTATCA
*
14308603 CAATTTTTTTTT-AA-GTATTATGAC
188 TAATTTTTTTTTAAAGGTATTATGAC
* * * *** **
14308627 ACTTCAAACATATTTTACGTCAAATTATACCAATTTTTTTTATTATTTTAATTTTTTTTACT-TT
1 ACTTCTAACACATTTTACGTAAAATTAT--CAA-TTTTACGATTATTTT--TCCTTTTTA-TGTT
* * * * *
14308691 AACACTTATTTTTTTATTTAGAATTA-CTTTTATTTATAATACTAAATTTTTTACATTAC-AA--
60 AACACTTATTTTTATGTTTAGAATTATTTTTTATTTATAATAAT-AATTTTTTAC-GTACTAATT
* * * * * *
14308752 ATTTA-TTAAGTT-TCAATAATATCCTTT-TGCTTTTATTGTTACTTTTCATTACATTTAAAATT
123 AATTATTTAAGTTAT-AATAATATCCTTTACGC--TTGTTGTTAATTTTCATTATATTT-AGATT
* * * * * *
14308814 ATTATAATTTTTTTTGTTAATGTGTAATGAT
184 ATCATAATTTTTTTT-TAAAGGTATTATGAC
* * *
14308845 ATTTCTAACA-ATTTTACGTAAAATAGTATTAATTTTACGATTATTCTTTCCATTTTATGTTAAC
1 ACTTCTAACACATTTTACGTAAAAT--TATCAATTTTACGATTATT-TTTCCTTTTTATGTTAAC
* * *
14308909 TCTTATTTTT-TGTTTAAAATTATTTTTTATTTGTAATAATAATTATTTTACGCTACTAACTTAA
63 ACTTATTTTTATGTTTAGAATTATTTTTTATTTATAATAATAATT-TTTTACG-TACTAA-TTAA
* * *
14308973 TTATTTACGTTATAATAATATCCTTTACGCTTGTTGTTATTTTTCATTATGTTTAGGATTATCAT
125 TTATTTAAGTTATAATAATATCCTTTACGCTTGTTGTTAATTTTCATTATATTTA-GATTATCAT
14309038 AACTTTTTTTTTAAAGGTATTATGAC
189 AA-TTTTTTTTTAAAGGTATTATGAC
** *
14309064 ACTTCTAAC-CATTTTACGCT-AAATGATATCAATTTTACGATTACTTTCACCCTTTTGTATATT
1 ACTTCTAACACATTTTACG-TAAAAT--TATCAATTTTACGATTA-TTT-TTCCTTTT-TATGTT
** * * *
14309127 AACACTTATTTTTCGGTTTAGAATTATTATTTATTTGTAATAGTAATTTTTTA
60 AACACTTATTTTTATGTTTAGAATTATTTTTTATTTATAATAATAATTTTTTA
14309180 TGTTGCCAAA
Statistics
Matches: 437, Mismatches: 78, Indels: 72
0.74 0.13 0.12
Matches are distributed among these distances:
213 2 0.00
214 34 0.08
215 79 0.18
216 15 0.03
217 45 0.10
218 47 0.11
219 121 0.28
220 39 0.09
221 25 0.06
222 30 0.07
ACGTcount: A:0.30, C:0.10, G:0.06, T:0.53
Consensus pattern (213 bp):
ACTTCTAACACATTTTACGTAAAATTATCAATTTTACGATTATTTTTCCTTTTTATGTTAACACT
TATTTTTATGTTTAGAATTATTTTTTATTTATAATAATAATTTTTTACGTACTAATTAATTATTT
AAGTTATAATAATATCCTTTACGCTTGTTGTTAATTTTCATTATATTTAGATTATCATAATTTTT
TTTTAAAGGTATTATGAC
Found at i:14309659 original size:212 final size:215
Alignment explanation
Indices: 14309383--14310183 Score: 689
Period size: 222 Copynumber: 3.7 Consensus size: 215
14309373 AATAATTTCA
* * * *
14309383 AATTTT-CAATTATTTTCACCTTTTTATATTAACA-TGTATTTTTTTTAGAATTATTTTTTATTT
1 AATTTTACGATTATTTTCACCTTTTTACATTAACACTATATTTTTGTTAGAATTATTTTTTATTT
** *
14309446 ATAATAATAATTTTTTTATGTTGTCAACTTA-TATTTATGTTACAATAAAATC-TTTTACACTTG
66 ATAATAATAATTTTTTTATGTTACCAA-TTATTATTTATGTTACAATAATATCTTTTTACACTTG
* *
14309509 TTCTTATCTTTTATTATGTTTAGAATTATTACAA-GTTTTTCTTAAGACGTTATGACACTTTTAA
130 TTCTTATCTTTTATTATGTTTAGAATTATTACAACTTTTTTCTTAAGATGTTATGACACTTTTAA
**
14309573 TATATTTTATATCAAATGATACT
195 TATATTTTACGT-AAAT-ATACT
*
14309596 AATTTTACGATTATTGTCACCTTTTTACATTAACACT-T-TTTTTGTT-GAATTATTTTTTATTT
1 AATTTTACGATTATTTTCACCTTTTTACATTAACACTATATTTTTGTTAGAATTATTTTTTATTT
* * * **
14309658 ATAATACTAATTTTTTTATGTTACCAA-T-TTATTACATTTTA-AA-AATATCTTTTTACGTTTG
66 ATAATAATAATTTTTTTATGTTACCAATTATTATT-TATGTTACAATAATATCTTTTTACACTTG
* * * *
14309719 TTATTAT-TTTTCATTATGTTTAGAATTATTACAATTTTTTTCTTAAGATGTAATGATACTTTTA
130 TTCTTATCTTTT-ATTATGTTTAGAATTATTACAACTTTTTTCTTAAGATGTTATGACACTTTTA
* *
14309783 AT-TATTTTACGTTAA-CTACT
194 ATATATTTTACGTAAATATACT
* * * * * *
14309803 AATTTTATGATTATTCTT-ATCATTTTACATTAACTCT-TAACTTTTTATTCAAAATTATTTTTT
1 AATTTTACGATTATT-TTCACCTTTTTACATTAACACTAT-A-TTTTTGTT-AGAATTATTTTTT
* * * * *
14309866 ATTTGTAATAATAGTTTTTTTATATTACCAAGTTAATTATTTATGCT-CTAATATTATCTTTTTA
62 ATTTATAATAATAATTTTTTTATGTTACCAA-TT-ATTATTTATGTTAC-AATAATATCTTTTTA
** * * * * * * *
14309930 TGCTTGTTGTTGTCTTTTATTACGTTTAGAAGTATTGCAACTTTTTTCTTAAAGGTGTTACGACA
124 CACTTGTTCTTATCTTTTATTATGTTTAGAATTATTACAACTTTTTTCTT-AAGATGTTATGACA
* *
14309995 CTTGTAACCA-A-TTTACGTTAAATAATACT
188 CTTTTAA-TATATTTTACG-TAAAT-ATACT
* * * * * **
14310024 AATTTTACGATTGTTTTCAACTCTTTTATACTAACACT-TATTTTTTAGTTTACAATTATTAATT
1 AATTTTACGATTATTTTCACCT-TTTTACATTAACACTATA-TTTTT-G-TTAGAATTATTTTTT
* * * * *
14310088 ATTTGTAATAATAATTCTTTTACT-TTGCCAAAAATATTATTTATATTACAATAATAT-TTTTTC
62 ATTTATAATAATAATTTTTTTA-TGTTACC--AATTATTATTTATGTTACAATAATATCTTTTT-
14310151 ACACTTGTTCTTA-CTTTTTATTATGTTTA-AATT
123 ACACTTGTTCTTATC-TTTTATTATGTTTAGAATT
14310184 TATCGTGACT
Statistics
Matches: 474, Mismatches: 77, Indels: 66
0.77 0.12 0.11
Matches are distributed among these distances:
207 35 0.07
208 1 0.00
209 11 0.02
210 59 0.12
211 32 0.07
212 78 0.16
213 13 0.03
214 27 0.06
215 4 0.01
216 7 0.01
217 48 0.10
218 26 0.05
219 4 0.01
220 2 0.00
221 34 0.07
222 86 0.18
223 5 0.01
224 2 0.00
ACGTcount: A:0.30, C:0.10, G:0.06, T:0.53
Consensus pattern (215 bp):
AATTTTACGATTATTTTCACCTTTTTACATTAACACTATATTTTTGTTAGAATTATTTTTTATTT
ATAATAATAATTTTTTTATGTTACCAATTATTATTTATGTTACAATAATATCTTTTTACACTTGT
TCTTATCTTTTATTATGTTTAGAATTATTACAACTTTTTTCTTAAGATGTTATGACACTTTTAAT
ATATTTTACGTAAATATACT
Found at i:14310092 original size:929 final size:937
Alignment explanation
Indices: 14308441--14310506 Score: 2243
Period size: 929 Copynumber: 2.2 Consensus size: 937
14308431 AAATTATGCT
* * * *
14308441 AATTTTACTATTATTTTTA-CTTCTTTACGTTAACACT-TATTTTTAAGTTTAGAATTATTTTTT
1 AATTTTACAATTATTTTCACCTT-TTTACATTAACACTGTA-CTTT--GTTTAGAATTATTTTTT
* * * * *
14308504 ATTTATAATAAT-ATTTTTTTACGTTTTCAATTTAATTATTTATGTTAAAATAAAATCTATTACG
62 ATTTATAATAATAATTTTTTTATGTTGTCAACTT-A-TATTTATGTTAAAATAAAATCTTTTACA
* * *
14308568 CTTGTTTTTA-CATTTTATTATATTTAGAGTTATCACAATTTTTTTTTAAGTA-TTATGACACTT
125 CTTGTTCTTATC-TTTTATTATGTTTAGAATTATCACAATTTTTTTTTAAG-AGTTATGACACTT
* * *** * ** *
14308631 CAAACATATTTTACGTCAAATTATACCAATTTTTTTTATTATTTTAATTTTTTTTACTTTAACAC
188 CAAACATATTTTACATCAAATGATACCAATTTTTACGATTATTGTAATCCTTTTTACATTAACAC
*
14308696 TTATTTTTTTATTTAGAATTACTTTTATTTATAATACTAAATTTTTTACATTACAAATTTATTAA
253 -T-TTTTTTTAGTTAGAATTACTTTTATTTATAATACTAAATTTTTTACATTACAAATTTATTAA
* * * * *
14308761 GTTTCAATAATATCCTTTTGCTTTTATTGTTACTTTTCATTACATTTAAAATTATTATAATTTTT
316 GTTTCAAAAATATCCTTTTACGTTTATTATTACTTTTCATTACATTTAAAATTATTACAATTTTT
* * *
14308826 TTTGTTAATGTGTAATGATATTTCTAACAATTTTACGTAAAATAGTATTAATTTTACGATTATTC
381 TTTCTTAATGTGTAATGATATTTCTAACAATTTTACGT-AAATACTACTAATTTTACGATTATTC
** * * *
14308891 TTTCCATTTTATGTTAACTCTTATTTTTTGTTTAAAATTATTTTTTATTTGTAATAATAATTATT
445 TTTCCATTTTACATTAACTCTTACTTTTTATTCAAAATTATTTTTTATTTGTAATAATAATTATT
* * *
14308956 TTACGCTACTAACTTAATTATTTACGTTATAATAATATCCTTTACGCTTGTTGTTATTTTTCATT
510 TTACACTACCAACTTAATTATTTACGCTATAATAATATCCTTTACGCTTGTTGTTATTTTTCATT
* * * * * * *
14309021 ATGTTTAGGATTATCATAACTTTTTTTTTAAAGGTATTATGACACTTCTAACCATTTTACGCTAA
575 ACGTTTAGAAGTATCACAACTTTTTTCTTAAAGGTATTACGACACTTCTAACCAATTTACGCTAA
* * * *
14309086 ATGATATCAATTTTACGATTACTTTCACCCTTTTGTATATTAACACTTATTTTTCGGTTTAGAAT
640 ATAATATCAATTTTACGATTACTTTCACCCTTTTGTATACTAACACTTATTTTTCAGTTTACAAT
* * *
14309151 TATTATTTATTTGTAATAGTAATT-TTTTA-TGTTGCCAAAAATATTATTTATGTTACAATAATG
705 TATTAATTATTTGTAATAATAATTCTTTTACT-TTGCCAAAAATATTATTTATATTACAATAAT-
* * * * * *
14309214 TTTTTTTTATACTTATT-TCTACTTTTTATTATATTTAGAA-TTATCACAACTTTTTGTTAAAGT
768 ATTTTTTCACACTTGTTCT-TACTTTTTATTATATTTA-AATTTATCACAACTCTTTATTAAAGT
** * * * * * *
14309277 GTTATGACACTTTTAATTCAATTTACACCAAATGATACCAATTTTATAACTATTCTTATCTTTTT
831 GTTACAACAATTCTAATCCAATTAACACCAAATGACACCAATTTTACAACTATTCTTATCTTTTT
** **
14309342 ATGTTATGAC-CATGTAACA-TTTTTTAC-ACCAAATAATTTCA
896 ATGTTACAACACATGTAACACACTTTTACTA-CAAATAA-TTCA
* * *
14309383 AATTTT-CAATTATTTTCACCTTTTTATATTAACA-TGTATTTTTTTTAGAATTATTTTTTATTT
1 AATTTTACAATTATTTTCACCTTTTTACATTAACACTGTACTTTGTTTAGAATTATTTTTTATTT
*
14309446 ATAATAATAATTTTTTTATGTTGTCAACTTATATTTATGTTACAATAAAATCTTTTACACTTGTT
66 ATAATAATAATTTTTTTATGTTGTCAACTTATATTTATGTTAAAATAAAATCTTTTACACTTGTT
* * * ** *
14309511 CTTATCTTTTATTATGTTTAGAATTATTACAAGTTTTTCTTAAGACGTTATGACACTTTTAATAT
131 CTTATCTTTTATTATGTTTAGAATTATCACAATTTTTTTTTAAGA-GTTATGACACTTCAAACAT
* * *
14309576 ATTTTATATCAAATGATACTAA-TTTTACGATTATTGTCA-CCTTTTTACATTAACAC-TTTTTT
195 ATTTTACATCAAATGATACCAATTTTTACGATTATTGTAATCCTTTTTACATTAACACTTTTTTT
* * ** * *
14309638 T-GTT-GAATTATTTTTTATTTATAATACTAATTTTTTTATGTTACCAATTTATTACA-TTTTAA
260 TAGTTAGAATTA-CTTTTATTTATAATACTAAATTTTTTACATTACAAATTTATTA-AGTTTCAA
* * * ** *
14309700 AAATATCTTTTTACGTTTGTTATTATTTTTCATTATGTTTAGAATTATTACAA-TTTTTTTCTTA
323 AAATATCCTTTTACGTTTATTATTACTTTTCATTACATTTAAAATTATTACAATTTTTTTTCTTA
** * *
14309764 A-GATGTAATGATACTTT-TAATTATTTTACGT-TA-ACTACTAATTTTATGATTATTCTTAT-C
388 ATG-TGTAATGATA-TTTCTAACAATTTTACGTAAATACTACTAATTTTACGATTATTCTT-TCC
* * *
14309824 ATTTTACATTAACTCTTAACTTTTTATTCAAAATTATTTTTTATTTGTAATAATAGTTTTTTTAT
450 ATTTTACATTAACTCTT-ACTTTTTATTCAAAATTATTTTTTATTTGTAATAATAATTATTTTAC
* * * * * * * *
14309889 ATTACCAAGTTAATTATTTATGCTCTAATATTATCTTTTTATGCTTGTTGTTGTCTTTT-ATTAC
514 ACTACCAACTTAATTATTTACGCTATAATAATATC-CTTTACGCTTGTTGTTAT-TTTTCATTAC
** * * *
14309953 GTTTAGAAGTATTGCAACTTTTTTCTTAAAGGTGTTACGACACTTGTAACCAATTTACGTTAAAT
577 GTTTAGAAGTATCACAACTTTTTTCTTAAAGGTATTACGACACTTCTAACCAATTTACGCTAAAT
** * *
14310018 AATA-CTAATTTTACGATTGTTTTCA-ACTCTTT-TATACTAACACTTATTTTTTAGTTTACAAT
642 AATATC-AATTTTACGATTACTTTCACCCT-TTTGTATACTAACACTTATTTTTCAGTTTACAAT
14310080 TATTAATTATTTGTAATAATAATTCTTTTACTTTGCCAAAAATATTATTTATATTACAATAATAT
705 TATTAATTATTTGTAATAATAATTCTTTTACTTTGCCAAAAATATTATTTATATTACAATAATAT
* *** **
14310145 TTTTTCACACTTGTTCTTACTTTTTATTATGTTTAAATTTATCGTGACTCTTTATTAGGGTGTTA
770 TTTTTCACACTTGTTCTTACTTTTTATTATATTTAAATTTATCACAACTCTTTATTAAAGTGTTA
* ** * ** *
14310210 CAATAATTCTAATCCAATTAATGCCAAGTGACATTAATTTTACAACTATTCTTATCTTTTTGTGT
835 CAACAATTCTAATCCAATTAACACCAAATGACACCAATTTTACAACTATTCTTATCTTTTTATGT
* * * * *
14310275 TACAACACTTTTAACACACTTTTACTATAAATGATTCC
900 TACAACACATGTAACACACTTTTACTACAAATAATTCA
* * * *
14310313 AATTTTACAATTATTTTCACTTTTTTACATTAACACTTTGCTTTGTTTAGAATTA-TTTTTATTA
1 AATTTTACAATTATTTTCACCTTTTTACATTAACACTGTACTTTGTTTAGAATTATTTTTTATTT
* * * * *
14310377 ATAATAATAAATTTTTTATGTTGTCAACTTA-ATTATTTGCATTATAATAATATCCTTTTATACT
66 ATAATAATAATTTTTTTATGTTGTCAACTTATATT-TATG--TTAAAATAAAAT-CTTTTACACT
* * *
14310441 TGTTGTTACTCTTTTCATTATGTTTAGAATTATCATAATTTTTTTTTTAAGATGTTATAACACTT
127 TGTTCTTA-TCTTTT-ATTATGTTTAGAATTATCACAA-TTTTTTTTTAAGA-GTTATGACACTT
14310506 C
188 C
14310507 TAACCATTTA
Statistics
Matches: 937, Mismatches: 155, Indels: 69
0.81 0.13 0.06
Matches are distributed among these distances:
928 39 0.04
929 225 0.24
930 152 0.16
931 122 0.13
932 106 0.11
933 18 0.02
934 16 0.02
935 6 0.01
936 35 0.04
937 101 0.11
938 63 0.07
939 18 0.02
940 5 0.01
941 22 0.02
942 9 0.01
ACGTcount: A:0.30, C:0.11, G:0.07, T:0.52
Consensus pattern (937 bp):
AATTTTACAATTATTTTCACCTTTTTACATTAACACTGTACTTTGTTTAGAATTATTTTTTATTT
ATAATAATAATTTTTTTATGTTGTCAACTTATATTTATGTTAAAATAAAATCTTTTACACTTGTT
CTTATCTTTTATTATGTTTAGAATTATCACAATTTTTTTTTAAGAGTTATGACACTTCAAACATA
TTTTACATCAAATGATACCAATTTTTACGATTATTGTAATCCTTTTTACATTAACACTTTTTTTT
AGTTAGAATTACTTTTATTTATAATACTAAATTTTTTACATTACAAATTTATTAAGTTTCAAAAA
TATCCTTTTACGTTTATTATTACTTTTCATTACATTTAAAATTATTACAATTTTTTTTCTTAATG
TGTAATGATATTTCTAACAATTTTACGTAAATACTACTAATTTTACGATTATTCTTTCCATTTTA
CATTAACTCTTACTTTTTATTCAAAATTATTTTTTATTTGTAATAATAATTATTTTACACTACCA
ACTTAATTATTTACGCTATAATAATATCCTTTACGCTTGTTGTTATTTTTCATTACGTTTAGAAG
TATCACAACTTTTTTCTTAAAGGTATTACGACACTTCTAACCAATTTACGCTAAATAATATCAAT
TTTACGATTACTTTCACCCTTTTGTATACTAACACTTATTTTTCAGTTTACAATTATTAATTATT
TGTAATAATAATTCTTTTACTTTGCCAAAAATATTATTTATATTACAATAATATTTTTTCACACT
TGTTCTTACTTTTTATTATATTTAAATTTATCACAACTCTTTATTAAAGTGTTACAACAATTCTA
ATCCAATTAACACCAAATGACACCAATTTTACAACTATTCTTATCTTTTTATGTTACAACACATG
TAACACACTTTTACTACAAATAATTCA
Found at i:14310613 original size:17 final size:18
Alignment explanation
Indices: 14310586--14310623 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
14310576 TAGGATTATT
*
14310586 TTTTATTTATAATACTAA
1 TTTTATTTATAATACGAA
*
14310604 TTTT-TTTATATTACGAA
1 TTTTATTTATAATACGAA
14310621 TTT
1 TTT
14310624 AATTATTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.61
Consensus pattern (18 bp):
TTTTATTTATAATACGAA
Found at i:14310876 original size:936 final size:925
Alignment explanation
Indices: 14308700--14311145 Score: 2287
Period size: 929 Copynumber: 2.6 Consensus size: 925
14308690 TAACACTTAT
* * * * *
14308700 TTTTTTATTTAGAATTA-CTTTTATTTATAATACTAAATTTTTTACATTACAAATTTATTA-AGT
1 TTTTTT-TGTAGAATTATTTTTTATTTATAATACTAATTTTTTTATATTACCAATTTATTACA-T
* * * * * * ** * * * *
14308763 TTCAATAATATCCTTTTGC-TTTTATTGTTACTTTTCATTACATTTAAAATTATTATAATTTTTT
64 TTTAAAAATATCTTTTTACGTTGTA---TTATTTTTCATTATGTTTAGAATTATCACAA-TTGTT
* * * * * * *
14308827 TTGTTAATG-TGTAATGATATTTCTAA-CAATTTTACGTAAAATAGTATTAATTTTACGATTATT
125 TTATTAA-GATATAATGATACTTATAATC-ATTTTAC-TTAAATAATACTAATTTTACGATTATT
* * ** * *
14308890 CTTTCCATTTTATGTTAACTCTTATTTTTTGTTTAAAATTATTTTTTATTTGTAATAATAATTAT
187 CTTACTATTTTACATTAACTTTTATTTTTTGTTTAAAATTATTTTTTATTTGTAATAAT-ATTTT
*** * * * *
14308955 TTTACGCTACTAACTTAATTATTTACGTTATAATAATATC-CTTTACGCTTGTTGTTAT-TTTTC
251 TTTATATTACTAACTTAATTATTTATGTTACAATAATATCTTTTTACTCTTGTTGTT-TCTTTTC
* * * * * *
14309018 ATTATGTTTAGGATTATCATAACTTTTTTTTTAAAGGTATTATGACACTTCTAACCATTTTACGC
315 ATTATGTTTAGAACTATCATAACTTTTTTCTTAAAGGTGTTACGACACTTCTAACCATTTTACGT
* * * * *
14309083 TAAATGATA-TCAATTTTACGATTACTTTCACCCTTTTGTATATTAACACTTATTTTTCGGTTTA
380 TAAATAATACT-AATTTTACGATTATTTTCACTC-TTT-TATACTAACACTTATTTTTTGGTTTA
* *
14309147 GAATTATTATTTATTTGTAATAGTAATT-TTTTA-TGTTGCCAAAAATATTATTTATGTTACAAT
442 GAATTATTATTTATTTGTAATAATAATTCTTTTACT-TTGCCAAAAATATTATTTATATTACAAT
* * * * * *
14309210 AATGTTTTTTTTATACTTATT-TCTACTTTTTATTATATTTAGAATTATCACAACTTTTTGTTAA
506 AAT-ATTTTTTAACACTTGTTCT-TACTTTTTATTATATTTAGAATTATCACAACTCTTTATTAA
** * * * * * *
14309274 AGTGTTATGACACTTTTAATTCAATTTACACCAAATGATACCAATTTTATAACTATTCTTATCTT
569 AGTGTTACAACAATTCTAATCCAATTAACACCAAATGACACCAATTTTACAACTATTCTTATCTT
** **
14309339 TTTATGTTATGACCATGTAACATTTTTTACACCAAATAATTTCAAATTTTCAATTATTTTCACCT
634 TTTATGTTACAACCATGTAACAACTTTTACACCAAATAATTTCAAATTTTCAATTATTTTCACCT
* * * * *
14309404 TTTTATATTAACATGTATTTTTTTTAGAATTATTTTTTATTTATAATAATAATTTTTTTATGTTG
699 TTTTACATTAACATGTACTTTGTTTAGAATTATTTTTTATTAATAATAATAAATTTTTTATGTTG
14309469 TCAACTTATATTTATGTTACAATAAAATCTTTTACACTTGTTCTTATCTTTTATTATGTTTAGAA
764 TCAACTTATATTTATGTTACAATAAAATCTTTTACACTTGTTCTTATCTTTTATTATGTTTAGAA
* * * * * * ** *
14309534 TTATTACAAGTTTTTCTTAAGACGTTATGACACTTTTAATATATTTTATATCAAATGATACTAAT
829 TTATCACAAGTTTTTCTTAAGACGTTATAACACTTCTAATACATTTTATAGCAAA-GAAAAAAAA
** * *
14309599 TTTACGATTATTGTCACCTTTTTACATTAACAC
893 AATACAATTATTATCACCTTTTTACATTAACAC
* *
14309632 TTTTTTTGTTGAATTATTTTTTATTTATAATACTAATTTTTTTATGTTACCAATTTATTACATTT
1 TTTTTTTGTAGAATTATTTTTTATTTATAATACTAATTTTTTTATATTACCAATTTATTACATTT
* * *
14309697 TAAAAATATCTTTTTACGTTTGTTATTATTTTTCATTATGTTTAGAATTATTACAATTTTTTTCT
66 TAAAAATATCTTTTTACG-TTG-TATTATTTTTCATTATGTTTAGAATTATCACAATTGTTTTAT
* * * * *
14309762 TAAGATGTAATGATACTTTTAATTATTTTACGTT--A-ACTACTAATTTTATGATTATTCTTA-T
129 TAAGATATAATGATACTTATAATCATTTTAC-TTAAATAATACTAATTTTACGATTATTCTTACT
* * * *
14309823 CATTTTACATTAACTCTTAACTTTTTATTCAAAATTATTTTTTATTTGTAATAATAGTTTTTTTA
193 -ATTTTACATTAACT-TTTATTTTTTGTTTAAAATTATTTTTTATTTGTAATAATA-TTTTTTTA
* * * *
14309888 TATTACCAAGTTAATTATTTATGCT-CTAATATTATCTTTTTA-TGCTTGTTGTTGTCTTTT-AT
255 TATTACTAACTTAATTATTTATGTTAC-AATAATATCTTTTTACT-CTTGTTGTT-TCTTTTCAT
* * *** * *
14309950 TACGTTTAGAAGTATTGCAACTTTTTTCTTAAAGGTGTTACGACACTTGTAACCAATTTACGTTA
317 TATGTTTAGAACTATCATAACTTTTTTCTTAAAGGTGTTACGACACTTCTAACCATTTTACGTTA
* * *
14310015 AATAATACTAATTTTACGATTGTTTTCAACTCTTTTATACTAACACTTATTTTTTAGTTTACAAT
382 AATAATACTAATTTTACGATTATTTTC-ACTCTTTTATACTAACACTTATTTTTTGGTTTAGAAT
*
14310080 TATTAATTATTTGTAATAATAATTCTTTTACTTTGCCAAAAATATTATTTATATTACAATAATAT
446 TATTATTTATTTGTAATAATAATTCTTTTACTTTGCCAAAAATATTATTTATATTACAATAATAT
* * *** **
14310145 TTTTTCACACTTGTTCTTACTTTTTATTATGTTTA-AATTTATCGTGACTCTTTATTAGGGTGTT
511 TTTTTAACACTTGTTCTTACTTTTTATTATATTTAGAA-TTATCACAACTCTTTATTAAAGTGTT
* ** * ** *
14310209 ACAATAATTCTAATCCAATTAATGCCAAGTGACATTAATTTTACAACTATTCTTATCTTTTTGTG
575 ACAACAATTCTAATCCAATTAACACCAAATGACACCAATTTTACAACTATTCTTATCTTTTTATG
* * * * * *
14310274 TTACAACACTTTTAACACACTTTTACTA-TAAATGA-TTCCAATTTTACAATTATTTTCACTTTT
640 TTACAAC-CATGTAACA-ACTTTTAC-ACCAAATAATTTCAAATTTT-CAATTATTTTCACCTTT
* *
14310337 TTACATTAACACTTTGCTTTGTTTAGAATTA-TTTTTATTAATAATAATAAATTTTTTATGTTGT
701 TTACATTAACA-TGTACTTTGTTTAGAATTATTTTTTATTAATAATAATAAATTTTTTATGTTGT
* * * * *
14310401 CAACTTA-ATTATTTGCATTATAATAATATCCTTTTATACTTGTTGTTACTCTTTTCATTATGTT
765 CAACTTATATT-TATG--TTACAATAAAAT-CTTTTACACTTGTTCTTA-TCTTTT-ATTATGTT
* * * * *
14310465 TAGAATTATCATAATTTTTTTTTTAAGATGTTATAACACTTCTAA-CCA-TTTA-ACGCAAA-AA
824 TAGAATTATCACAA-GTTTTTCTTAAGACGTTATAACACTTCTAATACATTTTATA-GCAAAGAA
* ** ***
14310526 AAAAAAAAT-CAATT-TTATGATTTTTTTTTGTTAACACC
887 AAAAAAAATACAATTATTATCACCTTTTTACATTAACA-C
* *
14310564 TATTTTTATATGTAGGATTATTTTTTATTTATAATACTAATTTTTTTATATTACGAATTTAATTA
1 --TTTTT-T-TGTAGAATTATTTTTTATTTATAATACTAATTTTTTTATATTACCAATTT-ATTA
* * * * *
14310629 TTTATGTTTTAATAAT-TTTTTTATAC-TTG-CTT-TTTTT-ATTATGTTTAGAATTATCACGA-
61 --CA--TTTTAAAAATATCTTTT-TACGTTGTATTATTTTTCATTATGTTTAGAATTATCACAAT
*
14310688 TGTTTTATTAAGGTATAATGATACTTATAATCATTTTACTTCAAATAATACTAATTTTACGATTA
121 TGTTTTATTAAGATATAATGATACTTATAATCATTTTACTT-AAATAATACTAATTTTACGATTA
* * *
14310753 TTCTCACTTTTTTACATTAACTTTTATTTTTTGGTTTAAAATTATTTTTTATTTTTAATAATATT
185 TTCTTACTATTTTACATTAACTTTTATTTTTT-GTTTAAAATTATTTTTTATTTGTAATAATATT
* * * * * *
14310818 TTTTTATATTACTAACTTAATTGTTTTTATTACAATAGTATCTTTTTACTCCTGTTGTTACTTTT
249 TTTTTATATTACTAACTTAATTATTTATGTTACAATAATATCTTTTTACTCTTGTTGTTTCTTTT
* * * * *
14310883 CATTATGTTTATAACTATCATAAC-TCTTTGTT-AGGGTGTTACGATACTTCTAACTCATTTTAC
314 CATTATGTTTAGAACTATCATAACTTTTTTCTTAAAGGTGTTACGACACTTCTAAC-CATTTTAC
* * * * * *
14310946 GTTAAATAACACCAATTTTATGATTATTCTC-CCCTTTT-TATGTAAACACTTATTTTTTGGTTT
378 GTTAAATAATACTAATTTTACGATTATTTTCACTCTTTTATA-CT-AACACTTATTTTTTGGTTT
* * * * ** *
14311009 AGAATTATTCTTTAAGTT-TAAGGTAATAATTCTTTTACGTTG-TAAACTTAATTATTTACATTA
441 AGAATTATTATTT-ATTTGTAA--TAATAATTCTTTTACTTTGCCAAAAAT-ATTATTTATATTA
* * * *
14311072 CAATAATATATTTTTAAC-CTTGTTCTTAC-ATTTATTACATTTAGAATTATCACAACTCTCTCT
502 CAATAATAT-TTTTTAACACTTGTTCTTACTTTTTATTATATTTAGAATTATCACAACTCTTTAT
*
14311135 TAAAATGTTAC
566 TAAAGTGTTAC
14311146 GATACTTCTA
Statistics
Matches: 1234, Mismatches: 218, Indels: 121
0.78 0.14 0.08
Matches are distributed among these distances:
928 36 0.03
929 220 0.18
930 150 0.12
931 145 0.12
932 109 0.09
933 25 0.02
934 107 0.09
935 119 0.10
936 199 0.16
937 102 0.08
938 1 0.00
939 4 0.00
940 5 0.00
941 12 0.01
ACGTcount: A:0.30, C:0.11, G:0.07, T:0.51
Consensus pattern (925 bp):
TTTTTTTGTAGAATTATTTTTTATTTATAATACTAATTTTTTTATATTACCAATTTATTACATTT
TAAAAATATCTTTTTACGTTGTATTATTTTTCATTATGTTTAGAATTATCACAATTGTTTTATTA
AGATATAATGATACTTATAATCATTTTACTTAAATAATACTAATTTTACGATTATTCTTACTATT
TTACATTAACTTTTATTTTTTGTTTAAAATTATTTTTTATTTGTAATAATATTTTTTTATATTAC
TAACTTAATTATTTATGTTACAATAATATCTTTTTACTCTTGTTGTTTCTTTTCATTATGTTTAG
AACTATCATAACTTTTTTCTTAAAGGTGTTACGACACTTCTAACCATTTTACGTTAAATAATACT
AATTTTACGATTATTTTCACTCTTTTATACTAACACTTATTTTTTGGTTTAGAATTATTATTTAT
TTGTAATAATAATTCTTTTACTTTGCCAAAAATATTATTTATATTACAATAATATTTTTTAACAC
TTGTTCTTACTTTTTATTATATTTAGAATTATCACAACTCTTTATTAAAGTGTTACAACAATTCT
AATCCAATTAACACCAAATGACACCAATTTTACAACTATTCTTATCTTTTTATGTTACAACCATG
TAACAACTTTTACACCAAATAATTTCAAATTTTCAATTATTTTCACCTTTTTACATTAACATGTA
CTTTGTTTAGAATTATTTTTTATTAATAATAATAAATTTTTTATGTTGTCAACTTATATTTATGT
TACAATAAAATCTTTTACACTTGTTCTTATCTTTTATTATGTTTAGAATTATCACAAGTTTTTCT
TAAGACGTTATAACACTTCTAATACATTTTATAGCAAAGAAAAAAAAAATACAATTATTATCACC
TTTTTACATTAACAC
Found at i:14310973 original size:219 final size:220
Alignment explanation
Indices: 14310707--14311213 Score: 522
Period size: 221 Copynumber: 2.3 Consensus size: 220
14310697 AAGGTATAAT
* * *
14310707 GATACTTATAA-TCATTTTAC-TTCAAATAATACTAATTTTACGATTATTCTCACTTTTTTACAT
1 GATACTTCTAACTCATTTTACGTT-AAATAATACAAATTTTACGATTATTCTCACCTTTTTACAT
** * ** * *
14310770 TAACTTTTATTTTTTGGTTTAAAATTATTTTTTATTTTTAA-TAAT-ATTTTTTTATATTACT-A
65 TAACACTTATTTTTTGGTTTAAAATTATTCTTTAAGTTTAAGTAATAATTCTTTTACATT-CTAA
* ** * * * * ** *
14310832 ACTTAATTGTTTTTATTACAATAGTATCTTTTT-ACTCCTGTTGTTACTTTTCATTATGTTTATA
129 ACTTAATTATTTACATTACAATAATATATTTTTAAC-CCTGTTCTTACATTT-ATTACATTTAGA
* * * ***
14310896 ACTATCATAACTCTTTGTTAGGGTGTTAC
192 ACTATCACAACTCTCTCTTAAAATGTTAC
* * * * ** *
14310925 GATACTTCTAACTCATTTTACGTTAAATAACACCAATTTTATGATTATTCTCCCCTTTTTATGTA
1 GATACTTCTAACTCATTTTACGTTAAATAATACAAATTTTACGATTATTCTCACCTTTTTACATT
* * *
14310990 AACACTTATTTTTTGGTTTAGAATTATTCTTTAAGTTTAAGGTAATAATTCTTTTACGTTGTAAA
66 AACACTTATTTTTTGGTTTAAAATTATTCTTTAAGTTTAA-GTAATAATTCTTTTACATTCTAAA
* *
14311055 CTTAATTATTTACATTACAATAATATATTTTTAACCTTGTTCTTACATTTATTACATTTAGAATT
130 CTTAATTATTTACATTACAATAATATATTTTTAACCCTGTTCTTACATTTATTACATTTAGAACT
14311120 ATCACAACTCTCTCTTAAAATGTTAC
195 ATCACAACTCTCTCTTAAAATGTTAC
* * ** * * *
14311146 GATACTTCTAACACATTTTATGCCAAATTATACAAATTTTACAATAATTCTCACCTTTTTACATT
1 GATACTTCTAACTCATTTTACGTTAAATAATACAAATTTTACGATTATTCTCACCTTTTTACATT
14311211 AAC
66 AAC
14311214 CAATTTTCAA
Statistics
Matches: 231, Mismatches: 51, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
218 10 0.04
219 76 0.33
220 2 0.01
221 90 0.39
222 51 0.22
223 2 0.01
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.49
Consensus pattern (220 bp):
GATACTTCTAACTCATTTTACGTTAAATAATACAAATTTTACGATTATTCTCACCTTTTTACATT
AACACTTATTTTTTGGTTTAAAATTATTCTTTAAGTTTAAGTAATAATTCTTTTACATTCTAAAC
TTAATTATTTACATTACAATAATATATTTTTAACCCTGTTCTTACATTTATTACATTTAGAACTA
TCACAACTCTCTCTTAAAATGTTAC
Found at i:14313534 original size:24 final size:24
Alignment explanation
Indices: 14313498--14313557 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 24
14313488 TAGTTTTTTA
*
14313498 TTTTTTATTTTATATA-TATTTCT
1 TTTTTTATCTTATATATTATTTCT
* *
14313521 TTTTTGTATCTTATGTATTATTTAT
1 TTTTT-TATCTTATATATTATTTCT
*
14313546 TTATTTAT-TTAT
1 TTTTTTATCTTAT
14313558 CATTACTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
23 9 0.29
24 12 0.39
25 10 0.32
ACGTcount: A:0.22, C:0.03, G:0.03, T:0.72
Consensus pattern (24 bp):
TTTTTTATCTTATATATTATTTCT
Found at i:14313547 original size:4 final size:4
Alignment explanation
Indices: 14313494--14313682 Score: 54
Period size: 4 Copynumber: 46.8 Consensus size: 4
14313484 ATTTTAGTTT
* * * * *
14313494 TTTA TTT- TTTA TTT- TATA TATA TTTC TTTT TTGTA TCTTA TGTA -TTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT-TA T-TTA TTTA TTTA
* * *
14313541 TTTA TTTA TTTA TTTA TCATTA -CTA TTTA TTAATA TATA TTTAA TTTT
1 TTTA TTTA TTTA TTTA T--TTA TTTA TTTA TT--TA TTTA TTT-A TTTA
* * * *
14313589 TTTA TTTA TCTG TTAGTA TTTGTA TGTA TTTA -TTA -TTA TTTA TCTA
1 TTTA TTTA TTTA TT--TA -TT-TA TTTA TTTA TTTA TTTA TTTA TTTA
* * * * * *
14313635 TTTA TATA -TTA -TTA TTTA TCTA TTAA TAT- TTTA TTTA TCTA ATTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
14313680 TTT
1 TTT
14313683 CTTTTTAATT
Statistics
Matches: 135, Mismatches: 33, Indels: 34
0.67 0.16 0.17
Matches are distributed among these distances:
3 22 0.16
4 90 0.67
5 10 0.07
6 11 0.08
7 2 0.01
ACGTcount: A:0.27, C:0.04, G:0.03, T:0.66
Consensus pattern (4 bp):
TTTA
Found at i:14313625 original size:75 final size:75
Alignment explanation
Indices: 14313534--14313674 Score: 175
Period size: 75 Copynumber: 1.9 Consensus size: 75
14313524 TTGTATCTTA
*
14313534 TGTATTATTTATTTATTTATTTATC-A-TTACTAT-TTATTA-ATATATATTTAATTTTTTTATT
1 TGTATTATTTATTTA-TTATTTATCTATTTA-TATATTATTATATATATA-TTAA-TATTTTATT
14313595 TATCTGTTAGTATT
62 TATCTGTTAGTATT
* *
14313609 TGTATGTATTTA-TTATTATTTATCTATTTATATATTATTATTTATCTATTAATATTTTATTTAT
1 TGTAT-TATTTATTTATTATTTATCTATTTATATATTATTATATATATATTAATATTTTATTTAT
14313673 CT
65 CT
14313675 AATTATTTCT
Statistics
Matches: 58, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
74 9 0.16
75 25 0.43
76 19 0.33
77 5 0.09
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.64
Consensus pattern (75 bp):
TGTATTATTTATTTATTATTTATCTATTTATATATTATTATATATATATTAATATTTTATTTATC
TGTTAGTATT
Found at i:14313645 original size:22 final size:22
Alignment explanation
Indices: 14313619--14313713 Score: 99
Period size: 22 Copynumber: 4.5 Consensus size: 22
14313609 TGTATGTATT
14313619 TATTATTATTTATCTATTTATA
1 TATTATTATTTATCTATTTATA
14313641 TATTATTATTTATCTA-TTA-A
1 TATTATTATTTATCTATTTATA
* *
14313661 TATT-TTATTTATCTAATTATT
1 TATTATTATTTATCTATTTATA
* * * *
14313682 TCTTTTTAATTATCTATTAATA
1 TATTATTATTTATCTATTTATA
*
14313704 T-TTTTTATTT
1 TATTATTATTT
14313714 GATTTGATTT
Statistics
Matches: 63, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
19 11 0.17
20 8 0.13
21 14 0.22
22 30 0.48
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.65
Consensus pattern (22 bp):
TATTATTATTTATCTATTTATA
Found at i:14313695 original size:41 final size:41
Alignment explanation
Indices: 14313619--14313707 Score: 124
Period size: 41 Copynumber: 2.1 Consensus size: 41
14313609 TGTATGTATT
* *
14313619 TATTATTATTTATCTATTTATATATTATTATTTATCTATTAA
1 TATT-TTATTTATCTAATTATATATTATTAATTATCTATTAA
* * *
14313661 TATTTTATTTATCTAATTATTTCTTTTTAATTATCTATTAA
1 TATTTTATTTATCTAATTATATATTATTAATTATCTATTAA
14313702 TATTTT
1 TATTTT
14313708 TTATTTGATT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
41 38 0.90
42 4 0.10
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (41 bp):
TATTTTATTTATCTAATTATATATTATTAATTATCTATTAA
Found at i:14314098 original size:31 final size:32
Alignment explanation
Indices: 14314040--14314104 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 32
14314030 AATTTTCAGA
* *
14314040 TTTCGATTGAATTTTTCAGCGAAGTTTGAATT
1 TTTCGATTGAATTTTCCAGCCAAGTTTGAATT
*
14314072 TTTCGA-TGACTTTTCCAGCCAAGTTTGAATT
1 TTTCGATTGAATTTTCCAGCCAAGTTTGAATT
14314103 TT
1 TT
14314105 CCGGTTAGCT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
31 24 0.80
32 6 0.20
ACGTcount: A:0.23, C:0.14, G:0.17, T:0.46
Consensus pattern (32 bp):
TTTCGATTGAATTTTCCAGCCAAGTTTGAATT
Found at i:14314717 original size:59 final size:58
Alignment explanation
Indices: 14314654--14314927 Score: 408
Period size: 59 Copynumber: 4.7 Consensus size: 58
14314644 TAAAAAATAT
*
14314654 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTTCTAAAAA
1 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAG-TTTTCTAAAAA
* *
14314713 ATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTCTAAAAA
1 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCTAAAAA
* *
14314771 ATATTTTTGAGGAAAAATTGAAAGTATCAA-TTTTCTTTAAAAATAAGTTTTTCTAAAAA
1 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTC-TTGAAAATAAG-TTTTCTAAAAA
* * *
14314830 ATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAG-TTTCTAAAAAA
1 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAAT-AAGTTTTCT-AAAAA
*
14314889 ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTG
1 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTG
14314928 TACGAAAGCA
Statistics
Matches: 195, Mismatches: 15, Indels: 10
0.89 0.07 0.05
Matches are distributed among these distances:
57 5 0.03
58 53 0.27
59 129 0.66
60 8 0.04
ACGTcount: A:0.41, C:0.06, G:0.13, T:0.39
Consensus pattern (58 bp):
ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCTAAAAA
Found at i:14314833 original size:117 final size:118
Alignment explanation
Indices: 14314654--14314922 Score: 445
Period size: 117 Copynumber: 2.3 Consensus size: 118
14314644 TAAAAAATAT
*
14314654 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTTCTAAAAAATATTT
1 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAGTTTTTCTAAAAAATATTT
*
14314719 TTGA-AGAAAAGTTGAAAGTATCAATTTTTCTTGAAAAT-AAGCTTTCT-AAAAA
66 TTGAGA-AAAAGTTGAAAGTATCAATTTTTCTCGAAAATAAAG-TTTCTAAAAAA
* *
14314771 ATATTTTTGAGGAAAAATTGAAAGTATCAATTTTCTTTAAAAATAAGTTTTTCTAAAAAATATTT
1 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAGTTTTTCTAAAAAATATTT
*
14314836 TTGAGAAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTCTAAAAAA
66 TTGAGAAAAAGTTGAAAGTATCAATTTTTCTCGAAAATAAAGTTTCTAAAAAA
*
14314889 ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
14314923 TCTTGTACGA
Statistics
Matches: 142, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
117 101 0.71
118 41 0.29
ACGTcount: A:0.42, C:0.06, G:0.13, T:0.39
Consensus pattern (118 bp):
ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAGTTTTTCTAAAAAATATTT
TTGAGAAAAAGTTGAAAGTATCAATTTTTCTCGAAAATAAAGTTTCTAAAAAA
Found at i:14318176 original size:19 final size:15
Alignment explanation
Indices: 14318133--14318178 Score: 83
Period size: 15 Copynumber: 3.1 Consensus size: 15
14318123 TTTGCATACA
14318133 TGCATTCTCATTCAT
1 TGCATTCTCATTCAT
14318148 TGCATTCTCATTCAT
1 TGCATTCTCATTCAT
*
14318163 TGCATTCTCACTCAT
1 TGCATTCTCATTCAT
14318178 T
1 T
14318179 ACACTTAACA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.20, C:0.28, G:0.07, T:0.46
Consensus pattern (15 bp):
TGCATTCTCATTCAT
Found at i:14325832 original size:12 final size:12
Alignment explanation
Indices: 14325817--14325843 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
14325807 TTTCCAACCA
14325817 TTTTTATTTTTT
1 TTTTTATTTTTT
14325829 TTTTTATTTTTT
1 TTTTTATTTTTT
14325841 TTT
1 TTT
14325844 CTTAATACCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.00, G:0.00, T:0.93
Consensus pattern (12 bp):
TTTTTATTTTTT
Found at i:14326506 original size:40 final size:40
Alignment explanation
Indices: 14326460--14326622 Score: 197
Period size: 40 Copynumber: 4.1 Consensus size: 40
14326450 GGCAATCTAT
*
14326460 TTTTTGAAGTTGTGATGCCTCTGTTTAGAAGAGCCATTTA
1 TTTTTGAAGTTGTGATGCCTCTGTTTAGAGGAGCCATTTA
14326500 TTTTTGAAGTTGTGATGCCTCTGTTTAGAGGAGCCATTTA
1 TTTTTGAAGTTGTGATGCCTCTGTTTAGAGGAGCCATTTA
** * *
14326540 TTTTCAAAGTTGTGATGCCTCTGATTAGAGGAGCAATTTA
1 TTTTTGAAGTTGTGATGCCTCTGTTTAGAGGAGCCATTTA
*** *
14326580 CTTTCCAAAAGTCGTTGA-GCCTCTGTTTAGAGGAG-C-TTTA
1 -TTT-TTGAAGTTG-TGATGCCTCTGTTTAGAGGAGCCATTTA
14326620 TTT
1 TTT
14326623 ATTTTCAAAG
Statistics
Matches: 110, Mismatches: 10, Indels: 7
0.87 0.08 0.06
Matches are distributed among these distances:
39 3 0.03
40 79 0.72
41 3 0.03
42 22 0.20
43 3 0.03
ACGTcount: A:0.23, C:0.14, G:0.23, T:0.40
Consensus pattern (40 bp):
TTTTTGAAGTTGTGATGCCTCTGTTTAGAGGAGCCATTTA
Found at i:14326558 original size:80 final size:83
Alignment explanation
Indices: 14326466--14326657 Score: 225
Period size: 84 Copynumber: 2.3 Consensus size: 83
14326456 CTATTTTTTG
* * *** *
14326466 AAGTTGTGATGCCTCTGTTTAGAAGAGCCATTTA-TTT-TTGAAGTTG-TGATGCCTCTGTTTAG
1 AAGTTGTGATGCCTCTGATTAGAAGAGCAATTTACTTTCCAAAAGTCGTTGA-GCCTCTGTTTAG
14326528 AGGAGC-CATTTATTTTCA
65 AGGAGCTCATTTATTTTCA
*
14326546 AAGTTGTGATGCCTCTGATTAGAGGAGCAATTTACTTTCCAAAAGTCGTTGAGCCTCTGTTTAGA
1 AAGTTGTGATGCCTCTGATTAGAAGAGCAATTTACTTTCCAAAAGTCGTTGAGCCTCTGTTTAGA
*
14326611 GGAGCTTTATTTATTTTCA
66 GGAGC-TCATTTATTTTCA
*
14326630 AAGTCAT-TGA-GCCTCTGATTAGATGAGC
1 AAGT--TGTGATGCCTCTGATTAGAAGAGC
14326658 TTTGTTTATG
Statistics
Matches: 96, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
80 31 0.32
81 3 0.03
82 23 0.24
83 3 0.03
84 32 0.33
85 3 0.03
86 1 0.01
ACGTcount: A:0.24, C:0.15, G:0.22, T:0.38
Consensus pattern (83 bp):
AAGTTGTGATGCCTCTGATTAGAAGAGCAATTTACTTTCCAAAAGTCGTTGAGCCTCTGTTTAGA
GGAGCTCATTTATTTTCA
Found at i:14326604 original size:42 final size:40
Alignment explanation
Indices: 14326476--14326657 Score: 170
Period size: 40 Copynumber: 4.5 Consensus size: 40
14326466 AAGTTGTGAT
* * * ** *
14326476 GCCTCTGTTTAGAAGAGCCATTTATTTTTGAAGTTG-TGA
1 GCCTCTGATTAGAGGAGCAATTTATTTTCAAAGTCGTTGA
* * *
14326515 TGCCTCTGTTTAGAGGAGCCATTTATTTTCAAAGTTG-TGA
1 -GCCTCTGATTAGAGGAGCAATTTATTTTCAAAGTCGTTGA
*
14326555 TGCCTCTGATTAGAGGAGCAATTTACTTTCCAAAAGTCGTTGA
1 -GCCTCTGATTAGAGGAGCAATTTA-TTTTC-AAAGTCGTTGA
* * *
14326598 GCCTCTGTTTAGAGGAGCTTTATTTATTTTCAAAGTCATTGA
1 GCCTCTGATTAGAGGAGC--AATTTATTTTCAAAGTCGTTGA
*
14326640 GCCTCTGATTAGATGAGC
1 GCCTCTGATTAGAGGAGC
14326658 TTTGTTTATG
Statistics
Matches: 124, Mismatches: 13, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
40 59 0.48
41 4 0.03
42 49 0.40
43 7 0.06
44 5 0.04
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38
Consensus pattern (40 bp):
GCCTCTGATTAGAGGAGCAATTTATTTTCAAAGTCGTTGA
Found at i:14326658 original size:42 final size:43
Alignment explanation
Indices: 14326516--14326701 Score: 165
Period size: 42 Copynumber: 4.4 Consensus size: 43
14326506 AAGTTGTGAT
* *
14326516 GCCTCTGTTTAGAGGAGC--CATTTA-TTTTCAAAGT--TGTGA
1 GCCTCTGATTAGAGGAGCTTTATTTATTTTTCAAAGTCAT-TGA
* * * *
14326555 TGCCTCTGATTAGAGGAGC--AATTTACTTTCCAAAAGTCGTTGA
1 -GCCTCTGATTAGAGGAGCTTTATTTATTTTTC-AAAGTCATTGA
*
14326598 GCCTCTGTTTAGAGGAGCTTTATTTA-TTTTCAAAGTCATTGA
1 GCCTCTGATTAGAGGAGCTTTATTTATTTTTCAAAGTCATTGA
* *
14326640 GCCTCTGATTAGATGAGCTTTGTTTATGTTTTTCAAAGTCATTGA
1 GCCTCTGATTAGAGGAGCTTTATTTA--TTTTTCAAAGTCATTGA
*
14326685 GCTTCT-ACTTAGAGGAG
1 GCCTCTGA-TTAGAGGAG
14326702 TTTTGATCAA
Statistics
Matches: 124, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
40 22 0.18
41 4 0.03
42 55 0.44
43 7 0.06
44 7 0.06
45 29 0.23
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.39
Consensus pattern (43 bp):
GCCTCTGATTAGAGGAGCTTTATTTATTTTTCAAAGTCATTGA
Found at i:14326717 original size:45 final size:45
Alignment explanation
Indices: 14326587--14326717 Score: 126
Period size: 45 Copynumber: 3.0 Consensus size: 45
14326577 TTACTTTCCA
* * **
14326587 AAAGTCGTTGAGCCTCTGTTTAGAGGAGCTTT-AT-TTA-TTTTC
1 AAAGTCATTGAGCCTCTGATTAGAGGAGCTTTGATCAAATTTTTC
* * * **
14326629 AAAGTCATTGAGCCTCTGATTAGATGAGCTTTGTTTATGTTTTTC
1 AAAGTCATTGAGCCTCTGATTAGAGGAGCTTTGATCAAATTTTTC
* *
14326674 AAAGTCATTGAGCTTCT-ACTTAGAGGAGTTTTGATCAAATTTTT
1 AAAGTCATTGAGCCTCTGA-TTAGAGGAGCTTTGATCAAATTTTT
14326718 AACACAAAAA
Statistics
Matches: 72, Mismatches: 13, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
42 29 0.40
43 1 0.01
44 2 0.03
45 40 0.56
ACGTcount: A:0.24, C:0.13, G:0.20, T:0.43
Consensus pattern (45 bp):
AAAGTCATTGAGCCTCTGATTAGAGGAGCTTTGATCAAATTTTTC
Found at i:14326955 original size:4 final size:4
Alignment explanation
Indices: 14326948--14327072 Score: 73
Period size: 4 Copynumber: 32.2 Consensus size: 4
14326938 TTATTATTAC
* * * * *
14326948 TATT TATT AATA TATT TATT TATT TATT TATT TATT TATC T-GT TAGTA
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TA-TT
* * * *
14326996 TATG TATG TATT TA-T TA-T TATT TATC TATT TATA TA-T TA-T TATT
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT
* * * *
14327040 TATC TATT AATAT TA-T TATT TATC TAAT TATT T
1 TATT TATT TAT-T TATT TATT TATT TATT TATT T
14327073 TCTTTTAATT
Statistics
Matches: 92, Mismatches: 23, Indels: 12
0.72 0.18 0.09
Matches are distributed among these distances:
3 15 0.16
4 73 0.79
5 4 0.04
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.63
Consensus pattern (4 bp):
TATT
Found at i:14326963 original size:12 final size:12
Alignment explanation
Indices: 14326937--14326979 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
14326927 ATGTATTTTT
*
14326937 TTTATTATTACTA
1 TTTATTAATA-TA
14326950 TTTATTAATATA
1 TTTATTAATATA
* *
14326962 TTTATTTATTTA
1 TTTATTAATATA
14326974 TTTATT
1 TTTATT
14326980 TATTTATCTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
12 18 0.67
13 9 0.33
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (12 bp):
TTTATTAATATA
Found at i:14326973 original size:20 final size:19
Alignment explanation
Indices: 14326948--14327062 Score: 86
Period size: 18 Copynumber: 6.4 Consensus size: 19
14326938 TTATTATTAC
14326948 TATTTATTAATATATTTATT
1 TATTTATT-ATATATTTATT
14326968 TATTTA-T-T-TATTTATT
1 TATTTATTATATATTTATT
* * * *
14326984 TATCTGTTAGTATATGTATG
1 TATTTATTA-TATATTTATT
*
14327004 TATTTATTAT-TATTTATC
1 TATTTATTATATATTTATT
14327022 TATTTA-TATAT-TATTATT
1 TATTTATTATATAT-TTATT
*
14327040 TATCTATTA-ATA-TTA-T
1 TATTTATTATATATTTATT
14327056 TATTTAT
1 TATTTAT
14327063 CTAATTATTT
Statistics
Matches: 76, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
16 19 0.25
17 9 0.12
18 24 0.32
19 5 0.07
20 19 0.25
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.63
Consensus pattern (19 bp):
TATTTATTATATATTTATT
Found at i:14327017 original size:42 final size:40
Alignment explanation
Indices: 14326960--14327070 Score: 114
Period size: 42 Copynumber: 2.6 Consensus size: 40
14326950 TTTATTAATA
* * * *
14326960 TATTTATTTATTTATTTATTTATTTATCTGTTAGTATATGTATG
1 TATTTA-TTA-TTATTTATCTATTTATATATTA-T-TATGTATC
*
14327004 TATTTATTATTATTTATCTATTTATATATTATTATTTATC
1 TATTTATTATTATTTATCTATTTATATATTATTATGTATC
*
14327044 TATTAATATTATTATTTATCTAATTAT
1 TATT--TATTATTATTTATCTATTTAT
14327071 TTTCTTTTAA
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
40 10 0.17
41 1 0.02
42 39 0.66
43 3 0.05
44 6 0.10
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.63
Consensus pattern (40 bp):
TATTTATTATTATTTATCTATTTATATATTATTATGTATC
Found at i:14327063 original size:20 final size:22
Alignment explanation
Indices: 14326937--14327070 Score: 109
Period size: 22 Copynumber: 6.2 Consensus size: 22
14326927 ATGTATTTTT
*
14326937 TTTAT-TATTACTATTTAT-TA
1 TTTATATATTATTATTTATCTA
* *
14326957 -ATATAT-TTATTTATTTATTTA
1 TTTATATATTA-TTATTTATCTA
* * * *
14326978 TTTATTTATCTGTTAGTATATGTA
1 TTTATATAT-TATTA-TTTATCTA
* *
14327002 TGTATTTATTATTATTTATCTA
1 TTTATATATTATTATTTATCTA
14327024 TTTATATATTATTATTTATCTA
1 TTTATATATTATTATTTATCTA
14327046 -TTA-ATATTATTATTTATCTA
1 TTTATATATTATTATTTATCTA
*
14327066 ATTAT
1 TTTAT
14327071 TTTCTTTTAA
Statistics
Matches: 92, Mismatches: 13, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
19 6 0.07
20 25 0.27
21 8 0.09
22 30 0.33
23 8 0.09
24 15 0.16
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.63
Consensus pattern (22 bp):
TTTATATATTATTATTTATCTA
Found at i:14327085 original size:42 final size:42
Alignment explanation
Indices: 14327008--14327091 Score: 116
Period size: 42 Copynumber: 2.0 Consensus size: 42
14326998 TGTATGTATT
* *
14327008 TATTATTATTTATCTATTTATATATTATTATTTATCTATTAA
1 TATTATTATTTATCTAATTATATATTATTAATTATCTATTAA
* *
14327050 TATTATTATTTATCTAATTAT-TTTCTTTTAATTATCTATTAA
1 TATTATTATTTATCTAATTATATAT-TATTAATTATCTATTAA
14327092 CATTTTTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
41 2 0.05
42 35 0.95
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (42 bp):
TATTATTATTTATCTAATTATATATTATTAATTATCTATTAA
Found at i:14328062 original size:76 final size:76
Alignment explanation
Indices: 14327982--14328128 Score: 242
Period size: 76 Copynumber: 1.9 Consensus size: 76
14327972 AAAAAAAATA
* *
14327982 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAACTTTCT-AAAAAATATTTTTG
1 TTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAACTTTCTAAAAAAATATTTTTG
14328046 AGGAAAAGTTAT
66 -GGAAAAGTTAT
* *
14328058 TTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAATTAAAGTTTCTAAAAAAATATTTTTG
1 TTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAACTTTCTAAAAAAATATTTTTG
14328123 GGAAAA
66 GGAAAA
14328129 AGTTGAAAGT
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
76 52 0.79
77 14 0.21
ACGTcount: A:0.41, C:0.05, G:0.14, T:0.39
Consensus pattern (76 bp):
TTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAACTTTCTAAAAAAATATTTTTG
GGAAAAGTTAT
Found at i:14331930 original size:27 final size:26
Alignment explanation
Indices: 14331900--14331998 Score: 74
Period size: 27 Copynumber: 3.4 Consensus size: 26
14331890 TGTAAAAGAG
14331900 TATGCATGCTAATTATGAGATAAATA
1 TATGCATGCTAATTATGAGATAAATA
* *
14331926 CTATGCATGTATGCTATGTTAATGA-ATGAATGTA
1 -TATGC----ATGCTA-ATT-ATGAGAT-AA-ATA
14331960 GTATGCATGCTAATTATGAGATAAATA
1 -TATGCATGCTAATTATGAGATAAATA
14331987 TCATGCATGCTA
1 T-ATGCATGCTA
14331999 TGTTGATGTG
Statistics
Matches: 57, Mismatches: 5, Indels: 20
0.70 0.06 0.24
Matches are distributed among these distances:
26 1 0.02
27 17 0.30
28 6 0.11
29 4 0.07
30 6 0.11
31 6 0.11
32 4 0.07
33 6 0.11
34 7 0.12
ACGTcount: A:0.36, C:0.10, G:0.18, T:0.35
Consensus pattern (26 bp):
TATGCATGCTAATTATGAGATAAATA
Found at i:14336376 original size:16 final size:16
Alignment explanation
Indices: 14336338--14336393 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
14336328 TTTTTTTTAT
* *
14336338 TTTTTATCCTTTTTTTT
1 TTTTT-TCCTTTTTGTA
*
14336355 TGTTTTTCGTTTTTGTA
1 T-TTTTTCCTTTTTGTA
*
14336372 TTTTTCCCTTTTTGTA
1 TTTTTTCCTTTTTGTA
14336388 TTTTTT
1 TTTTTT
14336394 TAATAAATAA
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
16 18 0.56
17 10 0.31
18 4 0.12
ACGTcount: A:0.05, C:0.11, G:0.07, T:0.77
Consensus pattern (16 bp):
TTTTTTCCTTTTTGTA
Found at i:14336458 original size:25 final size:25
Alignment explanation
Indices: 14336430--14336481 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
14336420 TTAAAAAAAC
14336430 AAAACTAGGCCTTAATCCCAATCAG
1 AAAACTAGGCCTTAATCCCAATCAG
14336455 AAAACTAGGCCTTAATCCCAATCAG
1 AAAACTAGGCCTTAATCCCAATCAG
14336480 AA
1 AA
14336482 TCGGGCCTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.42, C:0.27, G:0.12, T:0.19
Consensus pattern (25 bp):
AAAACTAGGCCTTAATCCCAATCAG
Found at i:14338989 original size:17 final size:18
Alignment explanation
Indices: 14338963--14338998 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
14338953 ACATGCATCA
14338963 ATATAGAATTAA-AAATT
1 ATATAGAATTAAGAAATT
*
14338980 ATATATAATTAAGAAATT
1 ATATAGAATTAAGAAATT
14338998 A
1 A
14338999 AACACTTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (18 bp):
ATATAGAATTAAGAAATT
Found at i:14339854 original size:21 final size:23
Alignment explanation
Indices: 14339808--14339865 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 23
14339798 CAATTAGCCA
14339808 ATTTTA-TTT-TTATTTCTTATT
1 ATTTTATTTTATTATTTCTTATT
14339829 ATTTTATTTTATTATTT-TT-TT
1 ATTTTATTTTATTATTTCTTATT
*
14339850 GTTTT-TTGTTATTATT
1 ATTTTATT-TTATTATT
14339866 CATTTCTTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
20 2 0.06
21 20 0.61
22 5 0.15
23 6 0.18
ACGTcount: A:0.17, C:0.02, G:0.03, T:0.78
Consensus pattern (23 bp):
ATTTTATTTTATTATTTCTTATT
Found at i:14340943 original size:9 final size:8
Alignment explanation
Indices: 14340925--14340961 Score: 56
Period size: 8 Copynumber: 4.5 Consensus size: 8
14340915 TATTCTCGAT
14340925 AAATAAAA
1 AAATAAAA
14340933 AAATAAAA
1 AAATAAAA
14340941 AAATAATAA
1 AAATAA-AA
*
14340950 AAATAATA
1 AAATAAAA
14340958 AAAT
1 AAAT
14340962 TTTGGGATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
8 19 0.70
9 8 0.30
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (8 bp):
AAATAAAA
Found at i:14342538 original size:24 final size:24
Alignment explanation
Indices: 14342506--14342552 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
14342496 GACTTTGTGC
14342506 ATTTGCATTATCATATCATGCATT
1 ATTTGCATTATCATATCATGCATT
* * *
14342530 ATTTTCATTGTCATATTATGCAT
1 ATTTGCATTATCATATCATGCAT
14342553 CTACATTTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.28, C:0.15, G:0.09, T:0.49
Consensus pattern (24 bp):
ATTTGCATTATCATATCATGCATT
Found at i:14345454 original size:10 final size:10
Alignment explanation
Indices: 14345441--14345491 Score: 56
Period size: 10 Copynumber: 5.5 Consensus size: 10
14345431 TAAAAAAATG
14345441 AAAAATGAAA
1 AAAAATGAAA
14345451 AAAAATG---
1 AAAAATGAAA
14345458 AAAAATGAAA
1 AAAAATGAAA
*
14345468 AAAAAAGAAA
1 AAAAATGAAA
*
14345478 AAAGA-GAAA
1 AAAAATGAAA
14345487 AAAAA
1 AAAAA
14345492 AAGATAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
7 7 0.20
9 8 0.23
10 20 0.57
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.06
Consensus pattern (10 bp):
AAAAATGAAA
Found at i:14345493 original size:13 final size:12
Alignment explanation
Indices: 14345448--14345515 Score: 66
Period size: 13 Copynumber: 5.5 Consensus size: 12
14345438 ATGAAAAATG
*
14345448 AAAAAAAATGAA
1 AAAAAAAAAGAA
*
14345460 AAATGAAAAA-AA
1 AAA-AAAAAAGAA
*
14345472 AAGAAAAAAGAGA
1 AAAAAAAAAGA-A
*
14345485 AAAAAAAAAGAT
1 AAAAAAAAAGAA
14345497 AAAAAAAAAGATA
1 AAAAAAAAAGA-A
14345510 AAAAAA
1 AAAAAA
14345516 GATGAAAATG
Statistics
Matches: 45, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
11 5 0.11
12 19 0.42
13 21 0.47
ACGTcount: A:0.84, C:0.00, G:0.10, T:0.06
Consensus pattern (12 bp):
AAAAAAAAAGAA
Found at i:14345500 original size:10 final size:10
Alignment explanation
Indices: 14345448--14345523 Score: 57
Period size: 10 Copynumber: 7.5 Consensus size: 10
14345438 ATGAAAAATG
14345448 AAAAAAA-AT
1 AAAAAAAGAT
* * *
14345457 GAAAAATGAA
1 AAAAAAAGAT
14345467 AAAAAAAGA-
1 AAAAAAAGAT
* *
14345476 AAAAAGAGAAA
1 AAAAAAAG-AT
14345487 AAAAAAAGAT
1 AAAAAAAGAT
14345497 AAAAAAAAAGAT
1 --AAAAAAAGAT
14345509 AAAAAAAGAT
1 AAAAAAAGAT
*
14345519 GAAAA
1 AAAAA
14345524 TGAGAGAAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 9
0.75 0.13 0.13
Matches are distributed among these distances:
9 12 0.23
10 24 0.45
11 7 0.13
12 10 0.19
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.07
Consensus pattern (10 bp):
AAAAAAAGAT
Found at i:14345504 original size:42 final size:44
Alignment explanation
Indices: 14345440--14345557 Score: 109
Period size: 43 Copynumber: 2.7 Consensus size: 44
14345430 TTAAAAAAAT
* *
14345440 GAAAAATGAAAAAAAATGAAAAATGAAAAAAAA-A-GAAAA-AAGA
1 GAAAAAAGAAAAATAA--AAAAATGAAAAAAAAGATGAAAATAAGA
* *
14345483 GAAAAAA-AAAAGATAAAAAAAAAGATAAAAAAAGATGAAAATGAGA
1 GAAAAAAGAAAA-AT-AAAAAAATGA-AAAAAAAGATGAAAATAAGA
* *
14345529 GAAAAAAGAAAAATGAAAGAATGAAAAAA
1 GAAAAAAGAAAAATAAAAAAATGAAAAAA
14345558 TGTAAAAGGA
Statistics
Matches: 61, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
42 11 0.18
43 14 0.23
44 8 0.13
45 12 0.20
46 12 0.20
47 4 0.07
ACGTcount: A:0.77, C:0.00, G:0.15, T:0.08
Consensus pattern (44 bp):
GAAAAAAGAAAAATAAAAAAATGAAAAAAAAGATGAAAATAAGA
Found at i:14345557 original size:17 final size:17
Alignment explanation
Indices: 14345432--14345546 Score: 95
Period size: 17 Copynumber: 7.1 Consensus size: 17
14345422 GGGAGATATT
14345432 AAAAAAATGAAAAATGA
1 AAAAAAATGAAAAATGA
14345449 AAAAAAATGAAAAATGA
1 AAAAAAATGAAAAATGA
* *
14345466 AAAAAAAAGAAAAAAG-
1 AAAAAAATGAAAAATGA
*
14345482 AGAAAAA--AAAAA-GA
1 AAAAAAATGAAAAATGA
* *
14345496 TAAAAAA--AAAGAT-A
1 AAAAAAATGAAAAATGA
14345510 AAAAAAGATG-AAAATGA
1 AAAAAA-ATGAAAAATGA
14345527 GAGAAAAAA-GAAAAATGA
1 -A-AAAAAATGAAAAATGA
14345545 AA
1 AA
14345547 GAATGAAAAA
Statistics
Matches: 81, Mismatches: 8, Indels: 19
0.75 0.07 0.18
Matches are distributed among these distances:
13 1 0.01
14 20 0.25
15 1 0.01
16 11 0.14
17 34 0.42
18 9 0.11
19 5 0.06
ACGTcount: A:0.78, C:0.00, G:0.14, T:0.08
Consensus pattern (17 bp):
AAAAAAATGAAAAATGA
Found at i:14346677 original size:21 final size:21
Alignment explanation
Indices: 14346651--14346731 Score: 90
Period size: 22 Copynumber: 3.8 Consensus size: 21
14346641 TTATGAATCC
14346651 TCAAATGAGAATCTTTGAGTT
1 TCAAATGAGAATCTTTGAGTT
*
14346672 TCAAATGAGAATATTTGAGTTT
1 TCAAATGAGAATCTTTGAG-TT
* * * * *
14346694 TTAAATAAAAATCTTTCAATTT
1 TCAAATGAGAATCTTT-GAGTT
14346716 TCAAATGAGAATCTTT
1 TCAAATGAGAATCTTT
14346732 AAGAGGTGAA
Statistics
Matches: 48, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
21 18 0.38
22 29 0.60
23 1 0.02
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.41
Consensus pattern (21 bp):
TCAAATGAGAATCTTTGAGTT
Found at i:14347187 original size:15 final size:15
Alignment explanation
Indices: 14347150--14347181 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
14347140 TTGAAATTTC
*
14347150 TTGTGAATCTTTGAA
1 TTGTGAACCTTTGAA
14347165 TTGTGAACCTTTGAA
1 TTGTGAACCTTTGAA
14347180 TT
1 TT
14347182 TCGAACTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.09, G:0.19, T:0.47
Consensus pattern (15 bp):
TTGTGAACCTTTGAA
Found at i:14347322 original size:45 final size:44
Alignment explanation
Indices: 14347264--14347699 Score: 361
Period size: 44 Copynumber: 9.8 Consensus size: 44
14347254 ATGATTATCA
* *
14347264 AGGAGCTTGATTTATTTTTTTCAAAGTTGTTGGGCCTCTGATTAG
1 AGGAGCTTTATTTA-TTTTTTCAAAGTTGTTGAGCCTCTGATTAG
* * *
14347309 AGGAGCTTTATTTATTTTTTTCTTCAAAGTTATTAAGCCTCCGATTAG
1 AGGAGCTTTATTTA---TTTT-TTCAAAGTTGTTGAGCCTCTGATTAG
* * *
14347357 AGGAGCCTTT-TTTATTTTTTTTCAAAGTTGTTGAGCTTCTGTTTAA
1 AGGAG-CTTTATTTA--TTTTTTCAAAGTTGTTGAGCCTCTGATTAG
* * * * *
14347403 AGGAGCCTTATTTATTTTTTCAAAGTTGTTAAGCTTCTGTTTAA
1 AGGAGCTTTATTTATTTTTTCAAAGTTGTTGAGCCTCTGATTAG
* * ** * *
14347447 AGGAGCCTTATTTTATTTTTTGAAAGTCATTAAGCCTCTGTTTAG
1 AGGAGCTTTA-TTTATTTTTTCAAAGTTGTTGAGCCTCTGATTAG
* * * *
14347492 AGGAG-TATTATTTA-TTTTTCAAAGTCGTTGAGTCTTTCATTAG
1 AGGAGCT-TTATTTATTTTTTCAAAGTTGTTGAGCCTCTGATTAG
* * * * *
14347535 AAGACCGTTATTTATTTTTTAAAAGTTGTTGAGTCTCT-ATTTAG
1 AGGAGCTTTATTTATTTTTTCAAAGTTGTTGAGCCTCTGA-TTAG
* * *
14347579 AGAAGCATTATTTA-TTTTTCAAAAGTTGTTGAGCCTCTAATTAG
1 AGGAGCTTTATTTATTTTTTC-AAAGTTGTTGAGCCTCTGATTAG
* * *
14347623 AGAAGCTTTA--T-TTTTTTCAAAGTTTTTGAGCCTAT-ATTTAG
1 AGGAGCTTTATTTATTTTTTCAAAGTTGTTGAGCCTCTGA-TTAG
*
14347664 AGGAGCTATATTTATTTTTTCAAAAGTTG-TGAGCCT
1 AGGAGCTTTATTTATTTTTTC-AAAGTTGTTGAGCCT
14347700 TTACTTGGGG
Statistics
Matches: 329, Mismatches: 44, Indels: 37
0.80 0.11 0.09
Matches are distributed among these distances:
40 1 0.00
41 27 0.08
42 7 0.02
43 39 0.12
44 120 0.36
45 60 0.18
46 29 0.09
47 11 0.03
48 31 0.09
49 4 0.01
ACGTcount: A:0.25, C:0.11, G:0.17, T:0.46
Consensus pattern (44 bp):
AGGAGCTTTATTTATTTTTTCAAAGTTGTTGAGCCTCTGATTAG
Found at i:14347663 original size:85 final size:88
Alignment explanation
Indices: 14347279--14347699 Score: 261
Period size: 87 Copynumber: 4.8 Consensus size: 88
14347269 CTTGATTTAT
* * * * * *
14347279 TTTTTTCAAAGTTGTTGGGCCTCTGA-TTAGAGGAGCTTTATTTATTTTTTTCTTCAAAGTTATT
1 TTTTTTAAAAGTTGTTGAGCCTAT-ATTTAGAGGAGCATTATTTA--TTTTTC--AAAAGTTGTT
* ** * * * *
14347343 AAGCCTCCGATTAGAGGAGCCTTTTTTATT
61 GAGCCTCTAATTAGAAGA-CC-GTTATATA
* * * * * * *
14347373 TTTTTTCAAAGTTGTTGAGCTTCTGTTTAAAGGAGCCTTATTTATTTTTTC-AAAGTTGTTAAGC
1 TTTTTTAAAAGTTGTTGAGCCTATATTTAGAGGAGCATTATTTA-TTTTTCAAAAGTTGTTGAGC
* ** *
14347437 TTCTGTTTA-AAGGAGCC-TTATTTTA
65 CTCTAATTAGAA-GA-CCGTTA-TATA
* ** * * * * * *
14347462 TTTTTTGAAAGTCATTAAGCCTCTGTTTAGAGGAGTATTATTTATTTTTC-AAAGTCGTTGAGTC
1 TTTTTTAAAAGTTGTTGAGCCTATATTTAGAGGAGCATTATTTATTTTTCAAAAGTTGTTGAGCC
* * *
14347526 TTTCATTAGAAGACCGTTATTTA
66 TCTAATTAGAAGACCGTTATATA
* * *
14347549 TTTTTTAAAAGTTGTTGAGTCTCTATTTAGAGAAGCATTATTTATTTTTCAAAAGTTGTTGAGCC
1 TTTTTTAAAAGTTGTTGAGCCTATATTTAGAGGAGCATTATTTATTTTTCAAAAGTTGTTGAGCC
*
14347614 TCTAATTAG-AGA-AGCTT-TAT-
66 TCTAATTAGAAGACCG-TTATATA
* *
14347634 TTTTTTCAAAGTTTTTGAGCCTATATTTAGAGGAGC-TATATTTATTTTTTCAAAAGTTG-TGAG
1 TTTTTTAAAAGTTGTTGAGCCTATATTTAGAGGAGCAT-TATTTA-TTTTTCAAAAGTTGTTGAG
14347697 CCT
64 CCT
14347700 TTACTTGGGG
Statistics
Matches: 271, Mismatches: 47, Indels: 27
0.79 0.14 0.08
Matches are distributed among these distances:
84 1 0.00
85 44 0.16
86 17 0.06
87 53 0.20
88 47 0.17
89 41 0.15
90 23 0.08
93 7 0.03
94 38 0.14
ACGTcount: A:0.25, C:0.11, G:0.17, T:0.46
Consensus pattern (88 bp):
TTTTTTAAAAGTTGTTGAGCCTATATTTAGAGGAGCATTATTTATTTTTCAAAAGTTGTTGAGCC
TCTAATTAGAAGACCGTTATATA
Found at i:14347948 original size:15 final size:15
Alignment explanation
Indices: 14347928--14347971 Score: 56
Period size: 13 Copynumber: 2.9 Consensus size: 15
14347918 TAGCCTGTTT
14347928 TTATTTTTATTTTTA
1 TTATTTTTATTTTTA
14347943 TTA-TTTTA-TTTTA
1 TTATTTTTATTTTTA
14347956 TTAGTTTTTAGTTTTT
1 TTA-TTTTTA-TTTTT
14347972 TGTTGATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
13 8 0.32
14 5 0.20
15 8 0.32
17 4 0.16
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.77
Consensus pattern (15 bp):
TTATTTTTATTTTTA
Found at i:14347954 original size:13 final size:15
Alignment explanation
Indices: 14347932--14347963 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
14347922 CTGTTTTTAT
14347932 TTTTATTTTTATTA-
1 TTTTATTTTTATTAG
14347946 TTTTA-TTTTATTAG
1 TTTTATTTTTATTAG
14347960 TTTT
1 TTTT
14347964 TAGTTTTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (15 bp):
TTTTATTTTTATTAG
Found at i:14353555 original size:4 final size:4
Alignment explanation
Indices: 14353546--14353607 Score: 51
Period size: 4 Copynumber: 16.5 Consensus size: 4
14353536 AATACATAAC
* **
14353546 TTTA TTTA TTT- TTTA TTT- TTTA TTCA -TCC TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* *
14353591 TTT- TTGA TTTT TTTA TT
1 TTTA TTTA TTTA TTTA TT
14353608 CATCATTTTT
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
3 10 0.22
4 36 0.78
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:14353593 original size:37 final size:37
Alignment explanation
Indices: 14353546--14353620 Score: 116
Period size: 37 Copynumber: 2.0 Consensus size: 37
14353536 AATACATAAC
* *
14353546 TTTATTTATTTTTTA-TTTTTTATTCATCCTTTATTTA
1 TTTATTTATTTTTGATTTTTTTATTCATCATTT-TTTA
14353583 TTTATTTATTTTTGATTTTTTTATTCATCATTTTTTA
1 TTTATTTATTTTTGATTTTTTTATTCATCATTTTTTA
14353620 T
1 T
14353621 AAAAAAAAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
37 19 0.54
38 16 0.46
ACGTcount: A:0.19, C:0.07, G:0.01, T:0.73
Consensus pattern (37 bp):
TTTATTTATTTTTGATTTTTTTATTCATCATTTTTTA
Found at i:14359431 original size:15 final size:15
Alignment explanation
Indices: 14359411--14359469 Score: 59
Period size: 15 Copynumber: 4.0 Consensus size: 15
14359401 CTAGCTTTCA
14359411 AAAGAAAAAAAAAAG
1 AAAGAAAAAAAAAAG
*
14359426 AAAG-AAAGAAAAAG
1 AAAGAAAAAAAAAAG
**
14359440 AAA-ACTGAAAAAAAG
1 AAAGA-AAAAAAAAAG
*
14359455 AAAGGAAAAAAAAAG
1 AAAGAAAAAAAAAAG
14359470 CAAAAACAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
14 12 0.35
15 22 0.65
ACGTcount: A:0.80, C:0.02, G:0.17, T:0.02
Consensus pattern (15 bp):
AAAGAAAAAAAAAAG
Found at i:14359451 original size:30 final size:31
Alignment explanation
Indices: 14359418--14359474 Score: 91
Period size: 29 Copynumber: 1.9 Consensus size: 31
14359408 TCAAAAGAAA
*
14359418 AAAAAAAGAAA-GAAAGAAAAAG-AAAACTG
1 AAAAAAAGAAAGGAAAAAAAAAGCAAAACTG
14359447 AAAAAAAGAAAGGAAAAAAAAAGCAAAA
1 AAAAAAAGAAAGGAAAAAAAAAGCAAAA
14359475 ACAATAAAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 11 0.44
30 10 0.40
31 4 0.16
ACGTcount: A:0.79, C:0.04, G:0.16, T:0.02
Consensus pattern (31 bp):
AAAAAAAGAAAGGAAAAAAAAAGCAAAACTG
Found at i:14359464 original size:14 final size:13
Alignment explanation
Indices: 14359417--14359467 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 13
14359407 TTCAAAAGAA
14359417 AAAAAAAAGAAAG
1 AAAAAAAAGAAAG
14359430 AAAGAAAAAGAAA-
1 AAA-AAAAAGAAAG
14359443 ACTGAAAAAAAGAAAGG
1 A---AAAAAAAGAAA-G
14359460 AAAAAAAA
1 AAAAAAAA
14359468 AGCAAAAACA
Statistics
Matches: 32, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
13 4 0.12
14 16 0.50
15 9 0.28
16 2 0.06
17 1 0.03
ACGTcount: A:0.80, C:0.02, G:0.16, T:0.02
Consensus pattern (13 bp):
AAAAAAAAGAAAG
Found at i:14359475 original size:25 final size:24
Alignment explanation
Indices: 14359420--14359513 Score: 73
Period size: 25 Copynumber: 3.8 Consensus size: 24
14359410 AAAAGAAAAA
14359420 AAAAAGAAAGAAAGAAAAAGAAAA-C
1 AAAAA-AAAGAAAGAAAAA-AAAAGC
*
14359445 TGAAAAAAAGAAAGGAAAAAAAAAGC
1 -AAAAAAAAGAAA-GAAAAAAAAAGC
* * ** *
14359471 AAAAACAATAAAGTGGAGAAAAAGC
1 AAAAAAAAGAAAG-AAAAAAAAAGC
*
14359496 AAAGAAAAGAAAGAAAAA
1 AAAAAAAAGAAAGAAAAA
14359514 GTGGGCAAGA
Statistics
Matches: 52, Mismatches: 13, Indels: 8
0.71 0.18 0.11
Matches are distributed among these distances:
24 3 0.06
25 38 0.73
26 11 0.21
ACGTcount: A:0.74, C:0.04, G:0.18, T:0.03
Consensus pattern (24 bp):
AAAAAAAAGAAAGAAAAAAAAAGC
Found at i:14365060 original size:20 final size:20
Alignment explanation
Indices: 14365026--14365074 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
14365016 GAATTATCAG
14365026 TATAAA-ATATATAAATAC-T
1 TATAAATATATATAAAT-CTT
*
14365045 TATAAATATATTTAAATCTT
1 TATAAATATATATAAATCTT
14365065 TATTAAATAT
1 TA-TAAATAT
14365075 CACTAATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
19 7 0.27
20 12 0.46
21 7 0.27
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (20 bp):
TATAAATATATATAAATCTT
Found at i:14366574 original size:10 final size:10
Alignment explanation
Indices: 14366559--14366584 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
14366549 GGATGTGAAA
14366559 GCCATGTAAT
1 GCCATGTAAT
14366569 GCCATGTAAT
1 GCCATGTAAT
14366579 GCCATG
1 GCCATG
14366585 CAAGGCCAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (10 bp):
GCCATGTAAT
Found at i:14367630 original size:20 final size:19
Alignment explanation
Indices: 14367607--14367645 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
14367597 TAACAAGGTA
14367607 AAATCGAAAATAACTACTTT
1 AAATCGAAAATAACT-CTTT
* *
14367627 AAATTGAAGATAACTCTTT
1 AAATCGAAAATAACTCTTT
14367646 CTAACTTCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.46, C:0.13, G:0.08, T:0.33
Consensus pattern (19 bp):
AAATCGAAAATAACTCTTT
Found at i:14381240 original size:156 final size:155
Alignment explanation
Indices: 14381047--14381357 Score: 426
Period size: 156 Copynumber: 2.0 Consensus size: 155
14381037 AATCCTAGTG
* *
14381047 GCTACTCATTATATCTATTCTTGGCCATTTTCAATCTTTCAAATCTACTATATCTAATTATTTAG
1 GCTACTCATTATATCTATTCTTGGCCATTTTCAATCTTTCAAATCTACTATATCTAATTACTCAG
* * ** * * * * *
14381112 TTAGCAATGTTAATCTTTATACTCGCTAAACTAATATACATCTACCTGCCATATCACTATTAAAG
66 TTAACAATGTCAATCCCTATACTCACCAAACTAATATACATCCACCTGCCATATCACCATTAAAA
* *
14381177 AGGGTTGACATCCTAACCCTTCGTC
131 AAGGTTGACATCCTAACCCATCGTC
* * ** *
14381202 GCTACTCATTAT-TCCTTATTCTTGGCCATTTTCAATCTTTTAGATCTGGTATGTCTAATTACTC
1 GCTACTCATTATAT-C-TATTCTTGGCCATTTTCAATCTTTCAAATCTACTATATCTAATTACTC
*
14381266 AGTTAACAATGTCAATCCCTATACTCACCAAACTAATATACATCCACCTGCCATGTCACCATTAA
64 AGTTAACAATGTCAATCCCTATACTCACCAAACTAATATACATCCACCTGCCATATCACCATTAA
14381331 AAAAGGTTGACATCCTAACCCATCGTC
129 AAAAGGTTGACATCCTAACCCATCGTC
14381358 ACAAAACAAA
Statistics
Matches: 135, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
154 1 0.01
155 13 0.10
156 121 0.90
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.36
Consensus pattern (155 bp):
GCTACTCATTATATCTATTCTTGGCCATTTTCAATCTTTCAAATCTACTATATCTAATTACTCAG
TTAACAATGTCAATCCCTATACTCACCAAACTAATATACATCCACCTGCCATATCACCATTAAAA
AAGGTTGACATCCTAACCCATCGTC
Found at i:14384202 original size:59 final size:59
Alignment explanation
Indices: 14384041--14384234 Score: 207
Period size: 59 Copynumber: 3.3 Consensus size: 59
14384031 TTTAGGTTTA
* * * * *
14384041 ATTTT-TT-GTTATAAATATGTTGAAATTTGTTTGGGTTTTAGTTACCGATTTGTTAAG
1 ATTTTGTTGGTTATATATTTGTTGAAATTTGTTTGGGTTTTGGTTACCAATTTGTTGAG
* * * *
14384098 CTTTTGTTAGTTATATATTTATTGAAATTTATTTGGGTTTTGGTTACCAATTTGTTGAG
1 ATTTTGTTGGTTATATATTTGTTGAAATTTGTTTGGGTTTTGGTTACCAATTTGTTGAG
* * * * * *
14384157 TTTTTGTTGGTTTTATATTTGTTGAGATTTGTTTAGGTTTCGGTTA-TATATTTGTTGA-
1 ATTTTGTTGGTTATATATTTGTTGAAATTTGTTTGGGTTTTGGTTACCA-ATTTGTTGAG
*
14384215 AATTTGTTGGTTATATATTT
1 ATTTTGTTGGTTATATATTT
14384235 TTGTTGGATT
Statistics
Matches: 114, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
57 4 0.04
58 20 0.18
59 90 0.79
ACGTcount: A:0.21, C:0.03, G:0.20, T:0.56
Consensus pattern (59 bp):
ATTTTGTTGGTTATATATTTGTTGAAATTTGTTTGGGTTTTGGTTACCAATTTGTTGAG
Found at i:14388207 original size:31 final size:31
Alignment explanation
Indices: 14388165--14388240 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 31
14388155 ATAATCATGC
* *
14388165 AATAAACCATGCAAA-CATCAAACAAAAATTT
1 AATAAATCATGCAAATCATCAAA-AAAAATAT
** *
14388196 AATAAATCATGCAAATCATGTAAAAATATAT
1 AATAAATCATGCAAATCATCAAAAAAAATAT
14388227 AATAAATCATGCAA
1 AATAAATCATGCAA
14388241 TTAAATTTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
31 34 0.87
32 5 0.13
ACGTcount: A:0.57, C:0.14, G:0.05, T:0.24
Consensus pattern (31 bp):
AATAAATCATGCAAATCATCAAAAAAAATAT
Found at i:14388390 original size:22 final size:22
Alignment explanation
Indices: 14388358--14388418 Score: 95
Period size: 22 Copynumber: 2.7 Consensus size: 22
14388348 TTGTGCAAAC
*
14388358 TAATAAATCATGCAATAATAAAT
1 TAAT-AATCATGCAAAAATAAAT
*
14388381 TAATAATCATACAAAAATAAAT
1 TAATAATCATGCAAAAATAAAT
14388403 TAATAATCATGCAAAA
1 TAATAATCATGCAAAA
14388419 GTATAAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
22 31 0.89
23 4 0.11
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.28
Consensus pattern (22 bp):
TAATAATCATGCAAAAATAAAT
Found at i:14389656 original size:53 final size:53
Alignment explanation
Indices: 14389527--14390346 Score: 461
Period size: 53 Copynumber: 15.4 Consensus size: 53
14389517 AAAAAATCCA
* ** * * * *
14389527 AAGATTTGCAAA-GTTCCAAGATTTGCAAAGCTTTTAAAGGTTCACAAAGATTTC
1 AAGATTTGCAAAGGTTTCAAGATTCACAAAG--GTTCAAGATTCGCAAAGATTTC
*
14389581 AAGATTTGCAAAGG-TTCTAAGATCCACAAAGGTTCAAGATTCGCAAA-ATTTTC
1 AAGATTTGCAAAGGTTTC-AAGATTCACAAAGGTTCAAGATTCGCAAAGA-TTTC
* *** * *
14389634 AAGATTCT-CAATGGTTTCAAGATTTGTAAAGGTTCAAGATTTGTAAAGATTTC
1 AAGATT-TGCAAAGGTTTCAAGATTCACAAAGGTTCAAGATTCGCAAAGATTTC
* * * * * *
14389687 AAGATTTGCAAAGGTTCCAAGATTCACAAGGGTTTCAAAATTCACAAAGGTTCC
1 AAGATTTGCAAAGGTTTCAAGATTCACAAAGG-TTCAAGATTCGCAAAGATTTC
* ** * * *
14389741 AAGATTTGCAAA-GTTTCCAATATTCGTAAAGGTTTCAAAATTTGTAAAGATTTC
1 AAGATTTGCAAAGGTTT-CAAGATTCACAAAGG-TTCAAGATTCGCAAAGATTTC
* * * * * * *
14389795 AAGA-TT-CATAGAGATTCCAAGATTCGCAAAAGTTCAAAATTTGCAAATATTTC
1 AAGATTTGCA-A-AGGTTTCAAGATTCACAAAGGTTCAAGATTCGCAAAGATTTC
* * * * * *
14389848 AAGATTCGCAAAGATTCCAATATTTACAAATGG-TCAAGATTTGCAAAGA-TTC
1 AAGATTTGCAAAGGTTTCAAGATTCACAAA-GGTTCAAGATTCGCAAAGATTTC
** * * ** * * *
14389900 AAGATTCACAAA-GATTCTAAAATTTGCAAAGATTCCAAGATTCACAAA-AGTTC
1 AAGATTTGCAAAGGTTTC-AAGATTCACAAAGGTT-CAAGATTCGCAAAGATTTC
* * * *
14389953 AAAGATTTGCAAAGGTTCCAAGATTCACAAAAGTCCAAGATTCGCAAAG-GTTC
1 -AAGATTTGCAAAGGTTTCAAGATTCACAAAGGTTCAAGATTCGCAAAGATTTC
** * *
14390006 AAGATTCACAAAGATTCCAAGATTCACAAAGGTTCAAAGATTCGCAAAGA-TTC
1 AAGATTTGCAAAGGTTTCAAGATTCACAAAGGTTC-AAGATTCGCAAAGATTTC
* * ** * * *
14390059 AAGATTTACAAAGG-TTCAAAATTTGCAAAGATTCCAAGATTCACAAA-AGTTCC
1 AAGATTTGCAAAGGTTTCAAGATTCACAAAGGTT-CAAGATTCGCAAAGA-TTTC
* * * ** * ** *
14390112 AAGGTTTGCAAAGGTTCCAAGGTTTGCGAAGGTTCCAAGATTCATAAAG-GTTC
1 AAGATTTGCAAAGGTTTCAAGATTCACAAAGGTT-CAAGATTCGCAAAGATTTC
** * * ** *
14390165 AAGATTCACAAAGATTTCAAGATTCATAAAGGTTCCAAGATTCTTAAAGTTTTC
1 AAGATTTGCAAAGGTTTCAAGATTCACAAAGGTT-CAAGATTCGCAAAGATTTC
* * * * * * *
14390219 AAGATTCGCAAAGATTTTAAGATTCATAAAGGTTCCAAGATTCTCAAAGGTTCC
1 AAGATTTGCAAAGGTTTCAAGATTCACAAAGGTT-CAAGATTCGCAAAGATTTC
* * ** * *
14390273 AAAATTCT-TAAA-GTTTCCAAGATTCTTAAAGTTTTCAAGATTCGCAAAGGTTTC
1 AAGATT-TGCAAAGGTTT-CAAGATTCACAAAG-GTTCAAGATTCGCAAAGATTTC
**
14390327 AAGATTCACAAAGGTTTCAA
1 AAGATTTGCAAAGGTTTCAA
14390347 AATTTGCTAA
Statistics
Matches: 607, Mismatches: 124, Indels: 70
0.76 0.15 0.09
Matches are distributed among these distances:
51 4 0.01
52 85 0.14
53 253 0.42
54 241 0.40
55 24 0.04
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.30
Consensus pattern (53 bp):
AAGATTTGCAAAGGTTTCAAGATTCACAAAGGTTCAAGATTCGCAAAGATTTC
Found at i:14389688 original size:71 final size:70
Alignment explanation
Indices: 14389527--14390231 Score: 325
Period size: 71 Copynumber: 9.9 Consensus size: 70
14389517 AAAAAATCCA
* * * * * *
14389527 AAGATTTGCAAAGTTCCAAGATTTGCAAAGCTTTTAAAGGTTCACAAAGATTTCAAGATTTGCAA
1 AAGATTTGCAAAGTTTCAAGATTCGCAAA-ATTTTCAAGATTCACAAAGGTTTCAAGATTTGCAA
14389592 AGGTTC
65 AGGTTC
*** * * * *
14389598 TAAGATCCACAAAGGTTCAAGATTCGCAAAATTTTCAAGATTCTCAATGGTTTCAAGATTTGTAA
1 -AAGATTTGCAAAGTTTCAAGATTCGCAAAATTTTCAAGATTCACAAAGGTTTCAAGATTTGCAA
14389663 AGGTTC
65 AGGTTC
* * ** * * * **
14389669 AAGATTTGTAAAGATTTCAAGATTTGCAAAGGTTCCAAGATTCACAAGGGTTTCAAAATTCACAA
1 AAGATTTGCAAAG-TTTCAAGATTCGCAAAATTTTCAAGATTCACAAAGGTTTCAAGATTTGCAA
14389734 AGGTTCC
65 AGGTT-C
* * ** * *** *
14389741 AAGATTTGCAAAGTTTCCAATATTCGTAAAGGTTTCAAAATTTGTAAAGATTTCAAGA-TT-CAT
1 AAGATTTGCAAAGTTT-CAAGATTCGCAAAATTTTCAAGATTCACAAAGGTTTCAAGATTTGCA-
*
14389804 AGAGATTCC
64 A-AGGTT-C
* * * * * * * *
14389813 AAGATTCGCAAAAG-TTCAAAATTTGC-AAATATTTCAAGATTCGCAAAGATTCCAATATTTACA
1 AAGATTTGC-AAAGTTTCAAGATTCGCAAAAT-TTTCAAGATTCACAAAGGTTTCAAGATTTGCA
14389876 AATGG-TC
64 AA-GGTTC
* * * * ** * * **
14389883 AAGATTTGCAAAGATTCAAGATTCACAAAGATTCT-AAAATTTGCAAAGATTCCAAGATTCACAA
1 AAGATTTGCAAAGTTTCAAGATTCGCAAA-ATTTTCAAGATTCACAAAGGTTTCAAGATTTGCAA
*
14389947 AAGTTC
65 AGGTTC
* * * * * **
14389953 AAAGATTTGCAAAGGTTCCAAGATTCACAAAA-GTCCAAGATTCGCAAAGG-TTCAAGATTCACA
1 -AAGATTTGCAAA-GTTTCAAGATTCGCAAAATTTTCAAGATTCACAAAGGTTTCAAGATTTGCA
*
14390016 AAGATTCC
64 AAGGTT-C
** * * *
14390024 AAGATTCACAAAGGTTCAAAGATTCGCAAAGA--TTCAAGATTTACAAAGG-TTCAAAATTTGCA
1 AAGATTTGCAAAGTTTC-AAGATTCGCAAA-ATTTTCAAGATTCACAAAGGTTTCAAGATTTGCA
*
14390086 AAGATTCC
64 AAGGTT-C
** * * * ** * * ** * * ***
14390094 AAGATTCACAAAAGTTCCAAGGTTTGCAAAGGTTCCAAGGTTTGCGAAGGTTCCAAGATTCATAA
1 AAGATTTGC-AAAGTTTCAAGATTCGCAAAATTTTCAAGATTCACAAAGGTTTCAAGATTTGCAA
14390159 AGGTTC
65 AGGTTC
** ** ** * ** * *
14390165 AAGATTCACAAAGATTTCAAGATTCATAAAGGTTCCAAGATTCTTAAAGTTTTCAAGATTCGCAA
1 AAGATTTGCAAAG-TTTCAAGATTCGCAAAATTTTCAAGATTCACAAAGGTTTCAAGATTTGCAA
14390230 AG
65 AG
14390232 ATTTTAAGAT
Statistics
Matches: 493, Mismatches: 115, Indels: 51
0.75 0.17 0.08
Matches are distributed among these distances:
69 8 0.02
70 151 0.31
71 212 0.43
72 116 0.24
73 6 0.01
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (70 bp):
AAGATTTGCAAAGTTTCAAGATTCGCAAAATTTTCAAGATTCACAAAGGTTTCAAGATTTGCAAA
GGTTC
Found at i:14390161 original size:18 final size:18
Alignment explanation
Indices: 14389527--14390361 Score: 515
Period size: 18 Copynumber: 46.9 Consensus size: 18
14389517 AAAAAATCCA
*
14389527 AAGATTTGCAAA-GTTCC
1 AAGATTCGCAAAGGTTCC
* * **
14389544 AAGATTTGCAAAGCTTTTA
1 AAGATTCGCAAAG-GTTCC
* * * *
14389563 AAGGTTCACAAAGATTTC
1 AAGATTCGCAAAGGTTCC
* *
14389581 AAGATTTGCAAAGGTTCT
1 AAGATTCGCAAAGGTTCC
* *
14389599 AAGATCCACAAAGGTT-C
1 AAGATTCGCAAAGGTTCC
** *
14389616 AAGATTCGCAAAATTTTC
1 AAGATTCGCAAAGGTTCC
* * *
14389634 AAGATTCTCAATGGTTTC
1 AAGATTCGCAAAGGTTCC
* *
14389652 AAGATTTGTAAAGGTT-C
1 AAGATTCGCAAAGGTTCC
* * * *
14389669 AAGATTTGTAAAGATTTC
1 AAGATTCGCAAAGGTTCC
*
14389687 AAGATTTGCAAAGGTTCC
1 AAGATTCGCAAAGGTTCC
* * *
14389705 AAGATTCACAAGGGTTTC
1 AAGATTCGCAAAGGTTCC
* *
14389723 AAAATTCACAAAGGTTCC
1 AAGATTCGCAAAGGTTCC
* *
14389741 AAGATTTGCAAAGTTTCC
1 AAGATTCGCAAAGGTTCC
* * *
14389759 AATATTCGTAAAGGTTTC
1 AAGATTCGCAAAGGTTCC
* * * * *
14389777 AAAATTTGTAAAGATTTC
1 AAGATTCGCAAAGGTTCC
** * *
14389795 AAGATTCATAGAGATTCC
1 AAGATTCGCAAAGGTTCC
*
14389813 AAGATTCGCAAAAGTT-C
1 AAGATTCGCAAAGGTTCC
* * ** *
14389830 AAAATTTGCAAATATTTC
1 AAGATTCGCAAAGGTTCC
*
14389848 AAGATTCGCAAAGATTCC
1 AAGATTCGCAAAGGTTCC
* **
14389866 AATATTTACAAATGG-T-C
1 AAGATTCGCAAA-GGTTCC
* *
14389883 AAGATTTGCAAAGATT-C
1 AAGATTCGCAAAGGTTCC
* * *
14389900 AAGATTCACAAAGATTCT
1 AAGATTCGCAAAGGTTCC
* * *
14389918 AAAATTTGCAAAGATTCC
1 AAGATTCGCAAAGGTTCC
* * *
14389936 AAGATTCACAAAAGTTCA
1 AAGATTCGCAAAGGTTCC
*
14389954 AAGATTTGCAAAGGTTCC
1 AAGATTCGCAAAGGTTCC
* *
14389972 AAGATTCACAAAAG-TCC
1 AAGATTCGCAAAGGTTCC
14389989 AAGATTCGCAAAGGTT-C
1 AAGATTCGCAAAGGTTCC
* *
14390006 AAGATTCACAAAGATTCC
1 AAGATTCGCAAAGGTTCC
* *
14390024 AAGATTCACAAAGGTTCA
1 AAGATTCGCAAAGGTTCC
*
14390042 AAGATTCGCAAAGATT-C
1 AAGATTCGCAAAGGTTCC
**
14390059 AAGATTTACAAAGGTT-C
1 AAGATTCGCAAAGGTTCC
* * *
14390076 AAAATTTGCAAAGATTCC
1 AAGATTCGCAAAGGTTCC
* *
14390094 AAGATTCACAAAAGTTCC
1 AAGATTCGCAAAGGTTCC
* *
14390112 AAGGTTTGCAAAGGTTCC
1 AAGATTCGCAAAGGTTCC
* * *
14390130 AAGGTTTGCGAAGGTTCC
1 AAGATTCGCAAAGGTTCC
**
14390148 AAGATTCATAAAGGTT-C
1 AAGATTCGCAAAGGTTCC
* * *
14390165 AAGATTCACAAAGATTTC
1 AAGATTCGCAAAGGTTCC
**
14390183 AAGATTCATAAAGGTTCC
1 AAGATTCGCAAAGGTTCC
** * *
14390201 AAGATTCTTAAAGTTTTC
1 AAGATTCGCAAAGGTTCC
* **
14390219 AAGATTCGCAAAGATTTT
1 AAGATTCGCAAAGGTTCC
**
14390237 AAGATTCATAAAGGTTCC
1 AAGATTCGCAAAGGTTCC
*
14390255 AAGATTCTCAAAGGTTCC
1 AAGATTCGCAAAGGTTCC
* ** *
14390273 AAAATTCTTAAAGTTTCC
1 AAGATTCGCAAAGGTTCC
** * *
14390291 AAGATTCTTAAAGTTTTC
1 AAGATTCGCAAAGGTTCC
*
14390309 AAGATTCGCAAAGGTTTC
1 AAGATTCGCAAAGGTTCC
* *
14390327 AAGATTCACAAAGGTTTC
1 AAGATTCGCAAAGGTTCC
* * *
14390345 AAAATTTGCTAAGGTTC
1 AAGATTCGCAAAGGTTC
14390362 ATAATTGAAA
Statistics
Matches: 645, Mismatches: 161, Indels: 23
0.78 0.19 0.03
Matches are distributed among these distances:
16 1 0.00
17 152 0.24
18 479 0.74
19 13 0.02
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (18 bp):
AAGATTCGCAAAGGTTCC
Found at i:14390476 original size:45 final size:44
Alignment explanation
Indices: 14390420--14390520 Score: 132
Period size: 45 Copynumber: 2.2 Consensus size: 44
14390410 ATTCTCTTTC
14390420 AAAATTTCAAAGATTTACA-TTTAAAAAATTTTAGAGATTCATATCT
1 AAAA-TTCAAAG-TTT-CATTTTAAAAAATTTTAGAGATTCATATCT
* * *
14390466 AAAATTCAAAGTTTCATTTTTGAAAAGTTTTAGGGATTCATATCT
1 AAAATTCAAAGTTTCA-TTTTAAAAAATTTTAGAGATTCATATCT
14390511 AAAATTCAAA
1 AAAATTCAAA
14390521 TATTCTCATT
Statistics
Matches: 50, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
43 2 0.04
44 3 0.06
45 41 0.82
46 4 0.08
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.39
Consensus pattern (44 bp):
AAAATTCAAAGTTTCATTTTAAAAAATTTTAGAGATTCATATCT
Found at i:14390533 original size:45 final size:45
Alignment explanation
Indices: 14390420--14390535 Score: 130
Period size: 45 Copynumber: 2.6 Consensus size: 45
14390410 ATTCTCTTTC
* *
14390420 AAAATTTCAAAGATT-TACATTTAAAAAATTTTAGAGATTCATATCT
1 AAAA-TTCAAATATTCT-CATTTGAAAAATTTTAGAGATTCATATCT
* * *
14390466 AAAATTCAAAGT-TTCAT-TTTTGAAAAGTTTTAGGGATTCATATCT
1 AAAATTCAAA-TATTC-TCATTTGAAAAATTTTAGAGATTCATATCT
14390511 AAAATTCAAATATTCTCATTTGAAA
1 AAAATTCAAATATTCTCATTTGAAA
14390536 CCTTAGAGAT
Statistics
Matches: 59, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
44 2 0.03
45 52 0.88
46 4 0.07
47 1 0.02
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (45 bp):
AAAATTCAAATATTCTCATTTGAAAAATTTTAGAGATTCATATCT
Found at i:14390698 original size:21 final size:22
Alignment explanation
Indices: 14390651--14390708 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
14390641 CAGAGATTAA
14390651 ATTTGAAAAGTTCAAAGATTCTT
1 ATTT-AAAAGTTCAAAGATTCTT
*
14390674 ATTTAAAA-TTCAAAG-TTTTT
1 ATTTAAAAGTTCAAAGATTCTT
14390694 CATTTTAAAAGTTCA
1 -A-TTTAAAAGTTCA
14390709 CATCCAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
20 4 0.13
21 8 0.26
22 11 0.35
23 8 0.26
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.43
Consensus pattern (22 bp):
ATTTAAAAGTTCAAAGATTCTT
Found at i:14391307 original size:71 final size:70
Alignment explanation
Indices: 14391184--14391322 Score: 197
Period size: 71 Copynumber: 2.0 Consensus size: 70
14391174 TGTGATGCAT
* *
14391184 ATGCAATATTCAAACAATGATCTAGATACTCCCTAAATGATATAGATACATGGTACAAAAAATTA
1 ATGCAATATTCAAACAATGATCTAAATACTCACTAAATGATATAGATACATGGTACAAAAAATTA
14391249 TGCGA
66 TGCGA
* * * * * *
14391254 ATGCAATATTCAAAACAATGATTTAAATATTCACTAAATGATGTAGGTGCATGGTACAAACAATT
1 ATGCAATATTC-AAACAATGATCTAAATACTCACTAAATGATATAGATACATGGTACAAAAAATT
14391319 ATGC
65 ATGC
14391323 AATTTATAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
70 11 0.18
71 49 0.82
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (70 bp):
ATGCAATATTCAAACAATGATCTAAATACTCACTAAATGATATAGATACATGGTACAAAAAATTA
TGCGA
Found at i:14392116 original size:11 final size:12
Alignment explanation
Indices: 14392090--14392119 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
14392080 TAAATCTTCC
14392090 TTTTTCTCTTTT
1 TTTTTCTCTTTT
14392102 TTTTTCT-TTTT
1 TTTTTCTCTTTT
14392113 TTTTTCT
1 TTTTTCT
14392120 ATTCTATCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (12 bp):
TTTTTCTCTTTT
Found at i:14392798 original size:16 final size:15
Alignment explanation
Indices: 14392766--14392805 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
14392756 CAATCAATTC
* *
14392766 TTTTCTTTTCTTTTT
1 TTTTTTTTTCTTCTT
14392781 TTTTTTTTTGCTTCTT
1 TTTTTTTTT-CTTCTT
14392797 TTTTTTTTT
1 TTTTTTTTT
14392806 ACAAGTCAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.00, C:0.10, G:0.03, T:0.88
Consensus pattern (15 bp):
TTTTTTTTTCTTCTT
Found at i:14396760 original size:136 final size:140
Alignment explanation
Indices: 14396496--14396991 Score: 409
Period size: 144 Copynumber: 3.5 Consensus size: 140
14396486 AATTGAGATA
* * * * * * *
14396496 TGAAAATTTTTATGAAAATCCAAGCTTGAGAAA-GCGAAATTATGAAAATTCCTCTAAAAGGATA
1 TGAAAAGTTTCATGAAAATCTAAGCTCGA-AAAGGCCAAATTATAAAAATACCTCTAAAAGG-TA
* * * * * *
14396560 TTTCAATAATTTCACACCTCCCAGGGTACTGCTATGATTTTAAATGCACCAAAAATCATGAAATA
64 TTTTAGTAATTTCACACCTCCCAGGGTACTGCTATGATTTCAAATACACCAAAAAGCATAAAATA
*
14396625 TGAGGAAA-T-G
129 TGAAGAAATTAG
* *
14396635 -G-AAAGTTTCATGAAAAT-TCAAGCTC-AGGAAGGCCAAATTATAAAAATACCCCTAAAAGGTA
1 TGAAAAGTTTCATGAAAATCT-AAGCTCGA-AAAGGCCAAATTATAAAAATACCTCTAAAAGGTA
* * * *
14396696 TTTTAGTAACTTCACACCTCTC-GGTGTACTGTTGTGATTTCAAATACACCAAAAAGCATAAAAT
64 TTTTAGTAATTTCACACCTCCCAGG-GTACTGCTATGATTTCAAATACACCAAAAAGCATAAAAT
*
14396760 ATTAAGAAATTAAG
128 ATGAAGAAATT-AG
* *
14396774 ATTTGAAAAGTTTCATGAAAATCTAAGCTCGAAAAGGCCAAATTACAAAAATACCTCT-AAGGAG
1 ---TGAAAAGTTTCATGAAAATCTAAGCTCGAAAAGGCCAAATTATAAAAATACCTCTAAAAG-G
* ** * * * * * *
14396838 TATTTTGGTAATTTCACACCTTTCAGGGTATTGCTATGATTTCCAATGCATCAAAAATCATGAAA
62 TATTTTAGTAATTTCACACCTCCCAGGGTACTGCTATGATTTCAAATACACCAAAAAGCATAAAA
* *
14396903 TATTATGAAATTGAG
127 TATGAAGAAATT-AG
* * * * * * * *
14396918 ATCTGAAAAATTTCATGAAAAT-TCAAGCTTGAGAAGACTAAATTATGAAAATATCTCTAAAGGG
1 ---TGAAAAGTTTCATGAAAATCT-AAGCTCGAAAAGGCCAAATTATAAAAATACCTCTAAAAGG
14396982 TATTTTAGTA
62 TATTTTAGTA
14396992 CTTTTGTAAT
Statistics
Matches: 292, Mismatches: 48, Indels: 29
0.79 0.13 0.08
Matches are distributed among these distances:
135 2 0.01
136 64 0.22
137 44 0.15
138 1 0.00
139 1 0.00
143 5 0.02
144 167 0.57
145 8 0.03
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (140 bp):
TGAAAAGTTTCATGAAAATCTAAGCTCGAAAAGGCCAAATTATAAAAATACCTCTAAAAGGTATT
TTAGTAATTTCACACCTCCCAGGGTACTGCTATGATTTCAAATACACCAAAAAGCATAAAATATG
AAGAAATTAG
Found at i:14396827 original size:144 final size:144
Alignment explanation
Indices: 14396636--14396991 Score: 432
Period size: 144 Copynumber: 2.5 Consensus size: 144
14396626 GAGGAAATGG
* *
14396636 AAAGTTTCATGAAAATTCAAGCTC-AGGAAGGCCAAATTATAAAAATACCCCTAAAAGGTATTTT
1 AAAGTTTCATGAAAATTCAAGCTCGA-GAAGGCCAAATTATAAAAATACCTCTAAAGGGTATTTT
* *
14396700 AGTAACTTCACACCTCTC-GGTGTACTGTTGTGATTTCAAATACACCAAAAAGCATAAAATATTA
65 AGTAACTTCACACCTCTCAGG-GTACTGCTATGATTTCAAATACACCAAAAAGCATAAAATATTA
*
14396764 AGAAATTAAGATTTGA
129 AGAAATTAAGATCTGA
* *
14396780 AAAGTTTCATGAAAA-TCTAAGCTCGAAAAGGCCAAATTACAAAAATACCTCT-AAGGAGTATTT
1 AAAGTTTCATGAAAATTC-AAGCTCGAGAAGGCCAAATTATAAAAATACCTCTAAAGG-GTATTT
* * * * * * * * *
14396843 TGGTAATTTCACACCTTTCAGGGTATTGCTATGATTTCCAATGCATCAAAAATCATGAAATATTA
64 TAGTAACTTCACACCTCTCAGGGTACTGCTATGATTTCAAATACACCAAAAAGCATAAAATATTA
* *
14396908 TGAAATTGAGATCTGA
129 AGAAATTAAGATCTGA
* * * * * *
14396924 AAAATTTCATGAAAATTCAAGCTTGAGAAGACTAAATTATGAAAATATCTCTAAAGGGTATTTTA
1 AAAGTTTCATGAAAATTCAAGCTCGAGAAGGCCAAATTATAAAAATACCTCTAAAGGGTATTTTA
14396989 GTA
66 GTA
14396992 CTTTTGTAAT
Statistics
Matches: 179, Mismatches: 27, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
143 5 0.03
144 165 0.92
145 9 0.05
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.30
Consensus pattern (144 bp):
AAAGTTTCATGAAAATTCAAGCTCGAGAAGGCCAAATTATAAAAATACCTCTAAAGGGTATTTTA
GTAACTTCACACCTCTCAGGGTACTGCTATGATTTCAAATACACCAAAAAGCATAAAATATTAAG
AAATTAAGATCTGA
Found at i:14397801 original size:36 final size:36
Alignment explanation
Indices: 14397706--14397804 Score: 121
Period size: 35 Copynumber: 2.8 Consensus size: 36
14397696 CATCGTAGGT
*
14397706 AAAAAAATAAAGATGACCATGACAACACAGCAAGTC
1 AAAAAAATAAAGATGACCAGGACAACACAGCAAGTC
* * * *
14397742 -AGAAAATAAAGATGA-CTGAGACAACACCGTAAGTC
1 AAAAAAATAAAGATGACCAG-GACAACACAGCAAGTC
*
14397777 AAAAAAATAAAGATAACCAGGACAACAC
1 AAAAAAATAAAGATGACCAGGACAACAC
14397805 TAATGATCAG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
34 1 0.02
35 28 0.54
36 21 0.40
37 2 0.04
ACGTcount: A:0.56, C:0.18, G:0.15, T:0.11
Consensus pattern (36 bp):
AAAAAAATAAAGATGACCAGGACAACACAGCAAGTC
Found at i:14397815 original size:71 final size:70
Alignment explanation
Indices: 14397673--14397841 Score: 184
Period size: 71 Copynumber: 2.4 Consensus size: 70
14397663 ACCAACATTG
* * * * * *
14397673 GAAAAATAAATAT-ACTGGGACAGCATCGTAGGTAAAAAAATAAAGATGACCATGACAACACAGC
1 GAAAAATAAATATGACTGAGACAACACCGTAAGTAAAAAAATAAAGATAACCAGGACAACACA-C
14397737 AAGTCA
65 AAGTCA
*
14397743 G-AAAATAAAGATGACTGAGACAACACCGTAAGTCAAAAAAATAAAGATAACCAGGACAACACTA
1 GAAAAATAAATATGACTGAGACAACACCGTAAGT-AAAAAAATAAAGATAACCAGGACAACAC-A
*
14397807 -ATGATCA
64 CAAG-TCA
*
14397814 GAAAAAAAAATATGACT-AGGACAACACC
1 GAAAAATAAATATGACTGA-GACAACACC
14397842 ATTAGTTGGA
Statistics
Matches: 83, Mismatches: 10, Indels: 10
0.81 0.10 0.10
Matches are distributed among these distances:
69 10 0.12
70 19 0.23
71 31 0.37
72 23 0.28
ACGTcount: A:0.53, C:0.17, G:0.17, T:0.14
Consensus pattern (70 bp):
GAAAAATAAATATGACTGAGACAACACCGTAAGTAAAAAAATAAAGATAACCAGGACAACACACA
AGTCA
Found at i:14397907 original size:35 final size:35
Alignment explanation
Indices: 14397708--14397933 Score: 131
Period size: 36 Copynumber: 6.3 Consensus size: 35
14397698 TCGTAGGTAA
* * * *
14397708 AAAAATAAAGATGACCATGACAACACAGCA-AGTCAG
1 AAAAATAAAGATGACTAGGATAACAC--CATAGTTAG
* * * *
14397744 -AAAATAAAGATGACT-GAGACAACACCGTAAGTCAA
1 AAAAATAAAGATGACTAG-GATAACACCAT-AGTTAG
* * * * *
14397779 AAAAATAAAGATAACCAGGACAACACTA-ATGATCAG
1 AAAAATAAAGATGACTAGGATAACACCATA-G-TTAG
* * * *
14397815 AAAAAAAAATATGACTAGGACAACACCATTAGTTGG
1 AAAAATAAAGATGACTAGGATAACACCA-TAGTTAG
* * *
14397851 AAAGATAAGGATGACTGGGATAACACCATAGGTT-G
1 AAAAATAAAGATGACTAGGATAACACCATA-GTTAG
*
14397886 AAAAATAAAGATGATTAGGATAACACTACA-AGTTAG
1 AAAAATAAAGATGACTAGGATAACAC--CATAGTTAG
14397922 AAAAATAAAGAT
1 AAAAATAAAGAT
14397934 AATCGAGACA
Statistics
Matches: 151, Mismatches: 26, Indels: 26
0.74 0.13 0.13
Matches are distributed among these distances:
33 1 0.01
34 1 0.01
35 56 0.37
36 88 0.58
37 4 0.03
38 1 0.01
ACGTcount: A:0.52, C:0.14, G:0.18, T:0.17
Consensus pattern (35 bp):
AAAAATAAAGATGACTAGGATAACACCATAGTTAG
Found at i:14397992 original size:36 final size:36
Alignment explanation
Indices: 14397952--14398025 Score: 89
Period size: 36 Copynumber: 2.1 Consensus size: 36
14397942 CAATACCAAC
*
14397952 GACTAGAAAAACACCGTA-AGTTAA-AAAAATAAAGAT
1 GACTAGAAAAACA-C-TACAGGTAAGAAAAATAAAGAT
* *
14397988 GACTAGGACAACACTACAGGTAAGAAAAATAAAGAT
1 GACTAGAAAAACACTACAGGTAAGAAAAATAAAGAT
14398024 GA
1 GA
14398026 TCAGGACCAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
34 2 0.06
35 6 0.18
36 25 0.76
ACGTcount: A:0.55, C:0.12, G:0.18, T:0.15
Consensus pattern (36 bp):
GACTAGAAAAACACTACAGGTAAGAAAAATAAAGAT
Found at i:14398081 original size:36 final size:35
Alignment explanation
Indices: 14397973--14398091 Score: 133
Period size: 36 Copynumber: 3.5 Consensus size: 35
14397963 CACCGTAAGT
* *
14397973 TAAAAAAATAAAGATGACTAGGACAACACTACAGG
1 TAAAAAAATAAAGATGACTAGGACAACACTGCAAG
14398008 TAAGAAAAATAAAGATGA-TCAGGAC--CA-TG-AA-
1 TAA-AAAAATAAAGATGACT-AGGACAACACTGCAAG
* *
14398039 TCAAAAAATAAAAATGACTAGGACAACACTGCAAG
1 TAAAAAAATAAAGATGACTAGGACAACACTGCAAG
14398074 CTAAAAAAATAAAGATGA
1 -TAAAAAAATAAAGATGA
14398092 TTGGGATGAT
Statistics
Matches: 69, Mismatches: 6, Indels: 17
0.75 0.07 0.18
Matches are distributed among these distances:
30 18 0.26
31 3 0.04
32 3 0.04
33 3 0.04
34 4 0.06
35 4 0.06
36 34 0.49
ACGTcount: A:0.56, C:0.13, G:0.16, T:0.15
Consensus pattern (35 bp):
TAAAAAAATAAAGATGACTAGGACAACACTGCAAG
Found at i:14398211 original size:36 final size:35
Alignment explanation
Indices: 14398115--14398211 Score: 95
Period size: 36 Copynumber: 2.7 Consensus size: 35
14398105 AATGGTCGAG
* * *
14398115 AAAACAAATATAATTGAGATACCACTGCAAGTCAAA
1 AAAATAAAAATAA-TGAGATAACACTGCAAGTCAAA
* * * *
14398151 AAAATAAAAATGATCAAGACAACACTGCAGGTCAAA
1 AAAATAAAAATAAT-GAGATAACACTGCAAGTCAAA
*
14398187 AAAATAAAGATAACTGAGATAACAC
1 AAAATAAAAATAA-TGAGATAACAC
14398212 CAATGGTAAA
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
35 1 0.02
36 46 0.96
37 1 0.02
ACGTcount: A:0.56, C:0.15, G:0.12, T:0.16
Consensus pattern (35 bp):
AAAATAAAAATAATGAGATAACACTGCAAGTCAAA
Found at i:14398241 original size:108 final size:108
Alignment explanation
Indices: 14398041--14398241 Score: 246
Period size: 108 Copynumber: 1.9 Consensus size: 108
14398031 ACCATGAATC
* * * * * * *
14398041 AAAAAATAAAAATGACTAGGACAACACTGCAAGCTAAAAAAATAAAGATGATTGGGATGATATCA
1 AAAAAATAAAAATGACTAAGACAACACTGCAAGCTAAAAAAATAAAGATAACTGAGATAACACCA
* * *
14398106 ATGGTCGAGAAAACAAATATAATTGAGATACCACTGCAAGTCA
66 ATGGTCAAAAAAACAAATATAACTGAGATACCACTGCAAGTCA
*
14398149 AAAAAATAAAAATGA-TCAAGACAACACTGC-AGGTCAAAAAAATAAAGATAACTGAGATAACAC
1 AAAAAATAAAAATGACT-AAGACAACACTGCAAGCT-AAAAAAATAAAGATAACTGAGATAACAC
*
14398212 CAATGGT-AAAAAAAGCAAATATGACTGAGA
64 CAATGGTCAAAAAAA-CAAATATAACTGAGA
14398242 CAACACCATA
Statistics
Matches: 78, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
107 9 0.12
108 69 0.88
ACGTcount: A:0.53, C:0.13, G:0.16, T:0.17
Consensus pattern (108 bp):
AAAAAATAAAAATGACTAAGACAACACTGCAAGCTAAAAAAATAAAGATAACTGAGATAACACCA
ATGGTCAAAAAAACAAATATAACTGAGATACCACTGCAAGTCA
Found at i:14398315 original size:35 final size:36
Alignment explanation
Indices: 14398184--14398353 Score: 119
Period size: 36 Copynumber: 4.8 Consensus size: 36
14398174 ACTGCAGGTC
* * * * *
14398184 AAAAAAATAAAGATAACTGAGATAACACCA-ATGGTA
1 AAAAAAATAAAGATGACTGGGACAACATCATA-AGTA
** * * * *
14398220 AAAAAAGCAAATATGACTGAGACAACACCATAAGTT
1 AAAAAAATAAAGATGACTGGGACAACATCATAAGTA
* * * ***
14398256 GAAAAAACAAATATGACAAAGACAACATCATAAGT-
1 AAAAAAATAAAGATGACTGGGACAACATCATAAGTA
* * ** *
14398291 CAAAAAATAAAGATGATTGGGACAACATTGTAGGTA
1 AAAAAAATAAAGATGACTGGGACAACATCATAAGTA
14398327 AAAAAAATAAAGATGACTGGGACAACA
1 AAAAAAATAAAGATGACTGGGACAACA
14398354 CTAATGGTAG
Statistics
Matches: 108, Mismatches: 24, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
35 25 0.23
36 82 0.76
37 1 0.01
ACGTcount: A:0.55, C:0.12, G:0.16, T:0.16
Consensus pattern (36 bp):
AAAAAAATAAAGATGACTGGGACAACATCATAAGTA
Found at i:14398402 original size:35 final size:35
Alignment explanation
Indices: 14398333--14398519 Score: 141
Period size: 35 Copynumber: 5.3 Consensus size: 35
14398323 GGTAAAAAAA
* * ** *
14398333 ATAAAGATGACTGGGACAACACTAATGGTAGAGAAG
1 ATAAAGATGAC-GGGATAACACCAACAGTCGAGAAG
14398369 AT-AAGATGATCGGGATAACACCAACAGTCGAGAAG
1 ATAAAGATGA-CGGGATAACACCAACAGTCGAGAAG
* * *
14398404 -TAAAGATGACTGGGATAACTCCAACAGTCAAAAAG
1 ATAAAGATGAC-GGGATAACACCAACAGTCGAGAAG
* * * *
14398439 -TAAAGATGACCAGGACAACACCAACCATTGGA-AAG
1 ATAAAGATGA-CGGGATAACACCAA-CAGTCGAGAAG
** *
14398474 ATAAAGATGACTATGATAACACCAAC-GATCAAGAAG
1 ATAAAGATGAC-GGGATAACACCAACAG-TCGAGAAG
14398510 ATAAAGATGA
1 ATAAAGATGA
14398520 TCGAGAAGGA
Statistics
Matches: 123, Mismatches: 19, Indels: 18
0.77 0.12 0.11
Matches are distributed among these distances:
34 2 0.02
35 80 0.65
36 41 0.33
ACGTcount: A:0.47, C:0.16, G:0.22, T:0.16
Consensus pattern (35 bp):
ATAAAGATGACGGGATAACACCAACAGTCGAGAAG
Found at i:14398526 original size:18 final size:17
Alignment explanation
Indices: 14398500--14398560 Score: 50
Period size: 18 Copynumber: 3.2 Consensus size: 17
14398490 TAACACCAAC
14398500 GATCAAGAAGATAAAGAT
1 GATC-AGAAGATAAAGAT
*
14398518 GATCGAGAAGGATAACATTAAT
1 GATC-AGAA-GATAA-A--GAT
14398540 GATCAGAAAGATAAAGAT
1 GATCAG-AAGATAAAGAT
14398558 GAT
1 GAT
14398561 GATATAACAC
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
18 13 0.37
19 5 0.14
20 2 0.06
21 7 0.20
22 8 0.23
ACGTcount: A:0.51, C:0.07, G:0.23, T:0.20
Consensus pattern (17 bp):
GATCAGAAGATAAAGAT
Found at i:14398839 original size:49 final size:49
Alignment explanation
Indices: 14398767--14398871 Score: 156
Period size: 49 Copynumber: 2.1 Consensus size: 49
14398757 AGAAGATTAA
* * *
14398767 GACAACACCAATGGTCGAAAAGACAAATATGACCAGGACAACACCAATG
1 GACAAAACCAACGGTCGAAAAGACAAATATAACCAGGACAACACCAATG
**
14398816 GACAAAACCAACGGTCGAAAAGACAAATATAACTGGGACAACACCAATG
1 GACAAAACCAACGGTCGAAAAGACAAATATAACCAGGACAACACCAATG
*
14398865 GTCAAAA
1 GACAAAA
14398872 AGATAAAGAT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.49, C:0.23, G:0.18, T:0.10
Consensus pattern (49 bp):
GACAAAACCAACGGTCGAAAAGACAAATATAACCAGGACAACACCAATG
Found at i:14398931 original size:36 final size:36
Alignment explanation
Indices: 14398816--14399677 Score: 289
Period size: 36 Copynumber: 24.4 Consensus size: 36
14398806 AACACCAATG
* * * * * *
14398816 GACAAAACCAACGGTC-GAAAAGACAAATATAACTGG
1 GACAACACCAATGGTCAG-AAAGATAAAGATGACTGA
* * *
14398852 GACAACACCAATGGTCAAAAAGATAAAGAT-AATAAA
1 GACAACACCAATGGTCAGAAAGATAAAGATGACT-GA
* * *
14398888 AATAACACCAATGGTCAGAAAGATAAAGATGATTGA
1 GACAACACCAATGGTCAGAAAGATAAAGATGACTGA
* * * * *
14398924 GACAACACTAACGTTC-GAAAAGATAATGAT--CAG-
1 GACAACACCAATGGTCAG-AAAGATAAAGATGACTGA
* * * * *
14398957 GACAATATCGATGGTAAAAAAGAT-AAGATGA-TCGA
1 GACAACACCAATGGTCAGAAAGATAAAGATGACT-GA
* * * ** *
14398992 AATAACACTAACAGTC-GAAAAGATAAAAATGA-TCGA
1 GACAACACCAATGGTCAG-AAAGATAAAGATGACT-GA
* * * *
14399028 GACAACATCAAT-GTTAGAAAGATAAAGATAAC-CA
1 GACAACACCAATGGTCAGAAAGATAAAGATGACTGA
* * * * * *
14399062 GGACAGCACCAACGATCGGAAAGATAAAGATGATTGG
1 -GACAACACCAATGGTCAGAAAGATAAAGATGACTGA
* * * * * * * * *
14399099 GATAACACTACTAGTAAAAAAGATAAAGATAATTGT
1 GACAACACCAATGGTCAGAAAGATAAAGATGACTGA
* * *
14399135 GATAACACCAATAGTCAAAAAGAT-AAGATGACT-A
1 GACAACACCAATGGTCAGAAAGATAAAGATGACTGA
*** * * * *
14399169 GGACAACACCAACAATCAAAAAAATAAAAATGACTGG
1 -GACAACACCAATGGTCAGAAAGATAAAGATGACTGA
* * * * * *
14399206 GACAATACCAACGGTCGGAAAGACAAATATGACTGG
1 GACAACACCAATGGTCAGAAAGATAAAGATGACTGA
*
14399242 GACAACACCAACGGTCAGAAAGATAAA-ATGA-TCGA
1 GACAACACCAATGGTCAGAAAGATAAAGATGACT-GA
** * *
14399277 GACAACACCAA-CATCAAAAAGATAAAAATGACT-A
1 GACAACACCAATGGTCAGAAAGATAAAGATGACTGA
* * * * *
14399311 GGACAACACTAACGATC-GATAAGAAAAATATGACT-A
1 -GACAACACCAATGGTCAGA-AAGATAAAGATGACTGA
*** * *
14399347 GGACAACACCAACAATC-GAAAAGATAAAAATGAC-CA
1 -GACAACACCAATGGTCAG-AAAGATAAAGATGACTGA
* * * * * *
14399383 GGATAGCATCAATAGTCAAAAAGATAAAGATGATTGA
1 -GACAACACCAATGGTCAGAAAGATAAAGATGACTGA
* ** * *
14399420 GACAACTCCAATAATTAGAAAGATAAAGATGATTGA
1 GACAACACCAATGGTCAGAAAGATAAAGATGACTGA
* ** * *
14399456 GACAATACCAACAGTTA-AGAAGAT-AAGATGAC-CA
1 GACAACACCAATGGTCAGA-AAGATAAAGATGACTGA
* * * * *
14399490 GGATAACACCAATGCTCAAAAAGATAAATATGACCGA
1 -GACAACACCAATGGTCAGAAAGATAAAGATGACTGA
* *** *
14399527 GATAACACCAACAATC---AA-A-AAA-AT-ACCGA
1 GACAACACCAATGGTCAGAAAGATAAAGATGACTGA
* * *
14399556 GACAACACTAACGGT-ATGAAAGATAAAGATGACTAA
1 GACAACACCAATGGTCA-GAAAGATAAAGATGACTGA
* * *
14399592 GACAATACCAATGATTAGAAAGATAAAGATGACTGA
1 GACAACACCAATGGTCAGAAAGATAAAGATGACTGA
* * * *
14399628 GATAACGCCAATGGTCAAAAAGATAAA-ATGACAGA
1 GACAACACCAATGGTCAGAAAGATAAAGATGACTGA
* *
14399663 GATAACATCAATGGT
1 GACAACACCAATGGT
14399678 TGGGAAGATA
Statistics
Matches: 621, Mismatches: 162, Indels: 87
0.71 0.19 0.10
Matches are distributed among these distances:
29 16 0.03
30 2 0.00
31 3 0.00
32 7 0.01
33 18 0.03
34 21 0.03
35 143 0.23
36 405 0.65
37 6 0.01
ACGTcount: A:0.51, C:0.16, G:0.18, T:0.16
Consensus pattern (36 bp):
GACAACACCAATGGTCAGAAAGATAAAGATGACTGA
Found at i:14399228 original size:107 final size:106
Alignment explanation
Indices: 14399117--14399375 Score: 279
Period size: 106 Copynumber: 2.4 Consensus size: 106
14399107 TACTAGTAAA
* * * * * *
14399117 AAAGATAAAGATAATTGTGATAACACCAATAGTCAAAAAGATAAGATGACTAG-GACAACACCAA
1 AAAGACAAAGATAACTGGGACAACACCAACAGTCAAAAAGATAAAATGA-TAGAGACAACACCAA
*
14399181 CAATCAAAAAAATAAAAATGACTGGGACAATACCAACGGTCGG
65 C-ATCAAAAAAATAAAAATGACTAGGACAATACCAACGGTCGG
* * * * *
14399224 AAAGACAAATATGACTGGGACAACACCAACGGTCAGAAAGATAAAATGATCGAGACAACACCAAC
1 AAAGACAAAGATAACTGGGACAACACCAACAGTCAAAAAGATAAAATGATAGAGACAACACCAAC
* * * *
14399289 ATCAAAAAGATAAAAATGACTAGGACAACACTAACGATC-G
66 ATCAAAAAAATAAAAATGACTAGGACAATACCAACGGTCGG
* * * * * *
14399329 ATAAGAAAAATATGACTAGGACAACACCAACAATCGAAAAGATAAAA
1 A-AAGACAAAGATAACTGGGACAACACCAACAGTCAAAAAGATAAAA
14399376 ATGACCAGGA
Statistics
Matches: 128, Mismatches: 22, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
105 2 0.02
106 75 0.59
107 51 0.40
ACGTcount: A:0.53, C:0.17, G:0.16, T:0.14
Consensus pattern (106 bp):
AAAGACAAAGATAACTGGGACAACACCAACAGTCAAAAAGATAAAATGATAGAGACAACACCAAC
ATCAAAAAAATAAAAATGACTAGGACAATACCAACGGTCGG
Found at i:14399340 original size:106 final size:107
Alignment explanation
Indices: 14399138--14399501 Score: 315
Period size: 107 Copynumber: 3.4 Consensus size: 107
14399128 TAATTGTGAT
* * *
14399138 AACACCAATAGTCAAAAAGATAAGATGACTAGGACAACACCAACAATCAAAAAAATAAAAATGAC
1 AACACCAACAGTCAAAAAGATAAAATGACGAGGACAACACCAACAATCAAAAAAATAAAAATGAC
* * * * *
14399203 TGGGACAATACCAACGGTCGGAAAGACAAATATGACTGGGAC
66 TAGGACAACACCAACGATCGGAAAGAAAAATATGACTAGGAC
* * *
14399245 AACACCAACGGTCAGAAAGATAAAATGATCGA-GACAACACCAAC-ATCAAAAAGATAAAAATGA
1 AACACCAACAGTCAAAAAGATAAAATGA-CGAGGACAACACCAACAATCAAAAAAATAAAAATGA
*
14399308 CTAGGACAACACTAACGATC-GATAAGAAAAATATGACTAGGAC
65 CTAGGACAACACCAACGATCGGA-AAGAAAAATATGACTAGGAC
* * * * * * * * * *
14399351 AACACCAACAATCGAAAAGATAAAAATGACCAGGATAGCATCAATAGTCAAAAAGATAAAGATGA
1 AACACCAACAGTCAAAAAGAT-AAAATGACGAGGACAACACCAACAATCAAAAAAATAAAAATGA
* * ** ** * * *
14399416 -TTGAGACAACTCCAATAATTAGAAAGATAAAGATGA-TTGAGAC
65 CTAG-GACAACACCAACGATCGGAAAGAAAAATATGACTAG-GAC
* * * * * *
14399459 AATACCAACAGTTAAGAAGATAAGATGACCAGGATAACACCAA
1 AACACCAACAGTCAAAAAGATAAAATGACGAGGACAACACCAA
14399502 TGCTCAAAAA
Statistics
Matches: 209, Mismatches: 40, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
105 2 0.01
106 71 0.34
107 74 0.35
108 60 0.29
109 2 0.01
ACGTcount: A:0.51, C:0.17, G:0.17, T:0.15
Consensus pattern (107 bp):
AACACCAACAGTCAAAAAGATAAAATGACGAGGACAACACCAACAATCAAAAAAATAAAAATGAC
TAGGACAACACCAACGATCGGAAAGAAAAATATGACTAGGAC
Found at i:14399666 original size:35 final size:36
Alignment explanation
Indices: 14399574--14399704 Score: 115
Period size: 35 Copynumber: 3.7 Consensus size: 36
14399564 TAACGGTATG
* * * * *
14399574 AAAGATAAAGATGACTA-AGACAATACCAATGATTAG
1 AAAGATAAAGATGAC-AGAGATAACACCAATGGTCAA
* *
14399610 AAAGATAAAGATGACTGAGATAACGCCAATGGTCAA
1 AAAGATAAAGATGACAGAGATAACACCAATGGTCAA
* ***
14399646 AAAGATAAA-ATGACAGAGATAACATCAATGGTTGG
1 AAAGATAAAGATGACAGAGATAACACCAATGGTCAA
* *
14399681 GAAGAT-AAGATGATAGAGATAACA
1 AAAGATAAAGATGACAGAGATAACA
14399705 TCGATGATTG
Statistics
Matches: 78, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
34 2 0.03
35 39 0.50
36 37 0.47
ACGTcount: A:0.50, C:0.10, G:0.21, T:0.18
Consensus pattern (36 bp):
AAAGATAAAGATGACAGAGATAACACCAATGGTCAA
Found at i:14399705 original size:35 final size:35
Alignment explanation
Indices: 14399647--14399726 Score: 124
Period size: 35 Copynumber: 2.3 Consensus size: 35
14399637 AATGGTCAAA
* *
14399647 AAGATAAAATGACAGAGATAACATCAATGGTTGGG
1 AAGATAAGATGACAGAGATAACATCAATGATTGGG
* *
14399682 AAGATAAGATGATAGAGATAACATCGATGATTGGG
1 AAGATAAGATGACAGAGATAACATCAATGATTGGG
14399717 AAGATAAGAT
1 AAGATAAGAT
14399727 ACTGAGACAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 41 1.00
ACGTcount: A:0.46, C:0.06, G:0.26, T:0.21
Consensus pattern (35 bp):
AAGATAAGATGACAGAGATAACATCAATGATTGGG
Found at i:14402647 original size:25 final size:25
Alignment explanation
Indices: 14402613--14402669 Score: 114
Period size: 25 Copynumber: 2.3 Consensus size: 25
14402603 AGGTCTCTTA
14402613 ATTTTTCTTCCAAAAAATTAAACTT
1 ATTTTTCTTCCAAAAAATTAAACTT
14402638 ATTTTTCTTCCAAAAAATTAAACTT
1 ATTTTTCTTCCAAAAAATTAAACTT
14402663 ATTTTTC
1 ATTTTTC
14402670 ATCTCACCAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.37, C:0.16, G:0.00, T:0.47
Consensus pattern (25 bp):
ATTTTTCTTCCAAAAAATTAAACTT
Found at i:14408058 original size:278 final size:278
Alignment explanation
Indices: 14407558--14408064 Score: 861
Period size: 278 Copynumber: 1.8 Consensus size: 278
14407548 CCGACATGAC
**
14407558 ACAAAGCTGCAATCTTGAAGCCCTATGGACAGCCAAAAGAAAAGCATAACCGGGACAAAACCCTA
1 ACAAAGCTGCAATCTTGAAGCCCTATGGACAGCCAAAAGAAAAGCATAACCAAGACAAAACCCTA
* *
14407623 GACTTCAAAACCTTTATTTCCCTCCATTTATTGGAAGTTCCTAGATGCTAAAAAAAAGATTCCAC
66 GACTTCAAAACATTCATTTCCCTCCATTTATTGGAAGTTCCTAGATGCTAAAAAAAAGATTCCAC
* *
14407688 CTTTTAGACGAAACCATATCAGCAAAGATGAAAACACAAAAAATTTTAGCAAAACTGGGAAGAGG
131 CTTTTAGACGAAACCATATCAGCAAAGATGAAAACACAAAAAATTTTAGCAAAACTAGGAAGAAG
* *
14407753 GACGTAGTTTGTGTGCATGGTAGTTTATAAAAAACAGTAAGCTTGCAAAGACACTTTGTCTAGAA
196 GACGTAATTTGTGTGCATGGCAGTTTATAAAAAACAGTAAGCTTGCAAAGACACTTTGTCTAGAA
14407818 AATACCAATAGACACGGA
261 AATACCAATAGACACGGA
* * **
14407836 ACAAAGCTGCAATCTTGAAGCCCTATGGACAGCCAAAAGAAAAGCATAATCAAGACTACCCCCTA
1 ACAAAGCTGCAATCTTGAAGCCCTATGGACAGCCAAAAGAAAAGCATAACCAAGACAAAACCCTA
* * * *
14407901 GACTTCAAAACATTCATTTCCCTCTATTTTTTGGAAGTTCCTAGATGCTAAAAAAAAGCTTTCAC
66 GACTTCAAAACATTCATTTCCCTCCATTTATTGGAAGTTCCTAGATGCTAAAAAAAAGATTCCAC
*
14407966 CTTTTAGATGAAACCATATCAGCAAAGATGAAAACACAAAAAATTTTAGCAAAACTAGGAAGAAG
131 CTTTTAGACGAAACCATATCAGCAAAGATGAAAACACAAAAAATTTTAGCAAAACTAGGAAGAAG
14408031 GACGTAATTTGTGTGCATGGCAGTTTATAAAAAA
196 GACGTAATTTGTGTGCATGGCAGTTTATAAAAAA
14408065 GGTACAAAGT
Statistics
Matches: 212, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
278 212 1.00
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.24
Consensus pattern (278 bp):
ACAAAGCTGCAATCTTGAAGCCCTATGGACAGCCAAAAGAAAAGCATAACCAAGACAAAACCCTA
GACTTCAAAACATTCATTTCCCTCCATTTATTGGAAGTTCCTAGATGCTAAAAAAAAGATTCCAC
CTTTTAGACGAAACCATATCAGCAAAGATGAAAACACAAAAAATTTTAGCAAAACTAGGAAGAAG
GACGTAATTTGTGTGCATGGCAGTTTATAAAAAACAGTAAGCTTGCAAAGACACTTTGTCTAGAA
AATACCAATAGACACGGA
Found at i:14408879 original size:145 final size:143
Alignment explanation
Indices: 14408626--14409007 Score: 414
Period size: 145 Copynumber: 2.6 Consensus size: 143
14408616 TCATTTTTGA
* * * *
14408626 GATTTTAAA-GCACCAAAAATCATGAAATATTATAAAAATAAGATCTAAAAATTTTTATGAAAAT
1 GATTTCAAATGCACCAAAAATCATGAAATATTATAAAATTAAGATCTAGAAATTTTCATGAAAAT
* * * * * *
14408690 CTAAGCTCAAGAAGGGCAAATTATGAAAATACCCATCTAGGGGTATTTTCATAATTTTAAACTTT
66 CCAAGCTCAA-AAAGACAAATTA-CAAAATACCCATCTAAGGGTATTTTCATAATTTCAAA-TTT
* *
14408755 -TCAAGGTACTACTAT
128 CCCAAGGTAATACTAT
* * * *
14408770 GATTTCAAATGCACTAAAAATTATAAAATATTATAAAATTAAGATCTAGAAAGTTTCATGAAAAT
1 GATTTCAAATGCACCAAAAATCATGAAATATTATAAAATTAAGATCTAGAAATTTTCATGAAAAT
* ** * *
14408835 CCAAGCTTGAAAAAGACAAATTACAAAAGTA-CCAT-TATTAGGGTATTTTGGTGATTTCACATT
66 CCAAGC-TCAAAAAGACAAATTACAAAA-TACCCATCTA--AGGGTATTTTCATAATTTCAAATT
*
14408898 TCCCAAGGTAATGCTAT
127 TCCCAAGGTAATACTAT
* *
14408915 GATTTCAAATGCACCAAAAATCATGAAATATTATAAAATTGAGAT-TTGAAAATTTTCATGAAAA
1 GATTTCAAATGCACCAAAAATCATGAAATATTATAAAATTAAGATCTAG-AAATTTTCATGAAAA
* *
14408979 TTCAAGCTCAAAAAGGCCAAATTACAAAA
65 TCCAAGCTCAAAAA-GACAAATTACAAAA
14409008 ACACCCCTTA
Statistics
Matches: 199, Mismatches: 31, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
143 2 0.01
144 27 0.14
145 167 0.84
146 3 0.02
ACGTcount: A:0.45, C:0.13, G:0.12, T:0.31
Consensus pattern (143 bp):
GATTTCAAATGCACCAAAAATCATGAAATATTATAAAATTAAGATCTAGAAATTTTCATGAAAAT
CCAAGCTCAAAAAGACAAATTACAAAATACCCATCTAAGGGTATTTTCATAATTTCAAATTTCCC
AAGGTAATACTAT
Done.