Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25818110
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 67000 characters in sequence are not A, C, G, or T
File 83 of 127
Found at i:15851595 original size:18 final size:18
Alignment explanation
Indices: 15851574--15851608 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
15851564 TGGAAAAGGG
15851574 AAAAAATAGAAAA-AAAAT
1 AAAAAATA-AAAAGAAAAT
15851592 AAAAAATAAAAAGAAAA
1 AAAAAATAAAAAGAAAA
15851609 AGAATAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.86, C:0.00, G:0.06, T:0.09
Consensus pattern (18 bp):
AAAAAATAAAAAGAAAAT
Found at i:15859378 original size:13 final size:13
Alignment explanation
Indices: 15859362--15859388 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15859352 GATCCTTTGA
15859362 ATATATCAACAAG
1 ATATATCAACAAG
15859375 ATATATCAACAAG
1 ATATATCAACAAG
15859388 A
1 A
15859389 CTTTCAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.15, G:0.07, T:0.22
Consensus pattern (13 bp):
ATATATCAACAAG
Found at i:15868480 original size:12 final size:12
Alignment explanation
Indices: 15868447--15868498 Score: 59
Period size: 12 Copynumber: 4.3 Consensus size: 12
15868437 ATTCAGAAAC
* *
15868447 ACCATTCAACAA
1 ACCATTCAGCAT
*
15868459 ACCATGCAGCAT
1 ACCATTCAGCAT
*
15868471 ACGATTCAGCAT
1 ACCATTCAGCAT
*
15868483 ACCATTCAACAT
1 ACCATTCAGCAT
15868495 ACCA
1 ACCA
15868499 ATATCATACA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.40, C:0.33, G:0.08, T:0.19
Consensus pattern (12 bp):
ACCATTCAGCAT
Found at i:15869441 original size:185 final size:186
Alignment explanation
Indices: 15869111--15869855 Score: 892
Period size: 185 Copynumber: 4.0 Consensus size: 186
15869101 GAAAACCGCC
* *** * * * *
15869111 TTCAATAATTATGTAAAAAAATTAAAAGGAATTAGTGAAGGCATTTTTCTAGAGTAAATGTTTTC
1 TTCAATAACTATGTACGTAAATTAAAAGAAATTAGTGAAGGCATTTTTCTAGAATAAACGCTTTC
* * * *
15869176 ATTAACCATCTTAAAATATGAGTAGTGGAATATTGAATGTGTTTTTCACTGGAAGACCCCTTTAA
66 ACTAACCATCTTAAAATTTGAGTAGTGGAATATTGAAGGTGTTTTTCACTGGAAGACGCCTTTAA
* *
15869241 TAATTCCAAAAATTTTAAGAGAAAATTATTAAAGGCATTTGTTCTCAAAAAATGCT
131 TAATCCCAAAAATTTTAAGAGAAAATTATTAAAGGCATTTGTTCTCAAAAAATGCA
* * *
15869297 TTC-ATAACCATGTATGTAAATTAAAAGAAATTAGTGAAGGCATTTTTCTAGAATAAATGCTTTC
1 TTCAATAACTATGTACGTAAATTAAAAGAAATTAGTGAAGGCATTTTTCTAGAATAAACGCTTTC
15869361 ACTAACCATCTTAAAATTTGAGTAGTGGAATATTGAAGGTGTTTTTCACTGGAATG-CGCCTTTA
66 ACTAACCATCTTAAAATTTGAGTAGTGGAATATTGAAGGTGTTTTTCACTGGAA-GACGCCTTTA
*
15869425 ATAATCCCAAAAATTTTAAGAGAAAATTATTAAAGGCATTAGTTCTCAAAAAATGCA
130 ATAATCCCAAAAATTTTAAGAGAAAATTATTAAAGGCATTTGTTCTCAAAAAATGCA
* * ** * * *
15869482 TTCAATAATTACGTACAAAAATTAAAAGGAATTAGTGAAGGCGTTTATTCTAGAA-AAACGCCTT
1 TTCAATAACTATGTACGTAAATTAAAAGAAATTAGTGAAGGCATTT-TTCTAGAATAAACGCTTT
** * * *
15869546 CACTAACCATCTTAAAATTTGAGTACAGTAATATTGAAGGTATTTTTCACTGGAAGATGCCTTTA
65 CACTAACCATCTTAAAATTTGAGTAGTGGAATATTGAAGGTGTTTTTCACTGGAAGACGCCTTTA
* * * ** * *
15869611 ATAATCCTAAAAATTTTCAAAAGGAAATTATTGTAGGCGTTTGTTCTCAAAAAATGCC
130 ATAATCCCAAAAATTTT-AAGAGAAAATTATTAAAGGCATTTGTTCTCAAAAAATGCA
** * *
15869669 TTCAATAACTATGTACGTAAATTAAAAGAAATTTATGTGTGAAAACGTTTTTCTAGAACAAACGC
1 TTCAATAACTATGTACGTAAATTAAAAGAAA-TTA---GTGAAGGCATTTTTCTAGAATAAACG-
* * * ** *
15869734 CTTT-ACTAACCATCTTAAAATTTAAGTAGTGAAATATTAAAGGTGTTTGGCACTGAAAGACGCC
61 CTTTCACTAACCATCTTAAAATTTGAGTAGTGGAATATTGAAGGTGTTTTTCACTGGAAGACGCC
* *
15869798 TTTAATAATCCCAAAAACTTTCTAA-AGGAAATTATTGTAAGTG--TTTGTTCTCAAAAAA
126 TTTAATAATCCCAAAAA-TTT-TAAGAGAAAATTATT-AAAG-GCATTTGTTCTCAAAAAA
15869856 CAACTTTCAC
Statistics
Matches: 485, Mismatches: 59, Indels: 25
0.85 0.10 0.04
Matches are distributed among these distances:
185 169 0.35
186 119 0.25
187 67 0.14
188 3 0.01
190 8 0.02
191 107 0.22
192 10 0.02
193 2 0.00
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (186 bp):
TTCAATAACTATGTACGTAAATTAAAAGAAATTAGTGAAGGCATTTTTCTAGAATAAACGCTTTC
ACTAACCATCTTAAAATTTGAGTAGTGGAATATTGAAGGTGTTTTTCACTGGAAGACGCCTTTAA
TAATCCCAAAAATTTTAAGAGAAAATTATTAAAGGCATTTGTTCTCAAAAAATGCA
Found at i:15872638 original size:12 final size:12
Alignment explanation
Indices: 15872619--15872650 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
15872609 CTTGATGTTT
15872619 AAAG-TGATGAA
1 AAAGATGATGAA
15872630 AAAGATGATGAA
1 AAAGATGATGAA
15872642 AAAGATGAT
1 AAAGATGAT
15872651 CCCAGTGACT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.56, C:0.00, G:0.25, T:0.19
Consensus pattern (12 bp):
AAAGATGATGAA
Found at i:15877893 original size:42 final size:41
Alignment explanation
Indices: 15877790--15877894 Score: 111
Period size: 42 Copynumber: 2.5 Consensus size: 41
15877780 CTTTTCCTTG
* *
15877790 AAGTAATCTCTCAATATGCTTCTTAATGGATCAACCTGTCCA
1 AAGTAATCT-TCATTATGCTTCTTAATGGATCAACCTGTCAA
* * * * **
15877832 AAGTAATCCTTTATCATGCTTCTTTATGGATTAATTTGTCAA
1 AAGTAAT-CTTCATTATGCTTCTTAATGGATCAACCTGTCAA
15877874 AAGTAATCATTCATTATGCTT
1 AAGTAATC-TTCATTATGCTT
15877895 TTCCATGTAT
Statistics
Matches: 51, Mismatches: 10, Indels: 4
0.78 0.15 0.06
Matches are distributed among these distances:
41 1 0.02
42 48 0.94
43 2 0.04
ACGTcount: A:0.30, C:0.18, G:0.11, T:0.40
Consensus pattern (41 bp):
AAGTAATCTTCATTATGCTTCTTAATGGATCAACCTGTCAA
Found at i:15877907 original size:42 final size:42
Alignment explanation
Indices: 15877805--15877993 Score: 120
Period size: 42 Copynumber: 4.6 Consensus size: 42
15877795 ATCTCTCAAT
* * ** * *
15877805 ATGCTTCTTAATGGATCAACCTGTCCAAAGTAATCCTTTATC
1 ATGCTTCTTCATGGATTAATTTGTCCAAAGTAATCATTCATC
* * *
15877847 ATGCTTCTTTATGGATTAATTTGTCAAAAGTAATCATTCATT
1 ATGCTTCTTCATGGATTAATTTGTCCAAAGTAATCATTCATC
* ** * * *
15877889 ATGCTT-TTCCATGTATTAATTAATCCAAAGTAATCCTCCAAC
1 ATGCTTCTT-CATGGATTAATTTGTCCAAAGTAATCATTCATC
* * *
15877931 AT--TT-TTCATGGATTAACTTATGCAAAGTAATC-TTCCATC
1 ATGCTTCTTCATGGATTAATTTGTCCAAAGTAATCATT-CATC
* * *
15877970 ATTC-TCTTAAATGGATCAATTTGT
1 ATGCTTCTT-CATGGATTAATTTGT
15877994 GCAAGAAAGT
Statistics
Matches: 114, Mismatches: 27, Indels: 12
0.75 0.18 0.08
Matches are distributed among these distances:
38 1 0.01
39 27 0.24
40 5 0.04
41 4 0.04
42 77 0.68
ACGTcount: A:0.31, C:0.19, G:0.11, T:0.40
Consensus pattern (42 bp):
ATGCTTCTTCATGGATTAATTTGTCCAAAGTAATCATTCATC
Found at i:15878187 original size:85 final size:85
Alignment explanation
Indices: 15878046--15878385 Score: 369
Period size: 85 Copynumber: 4.0 Consensus size: 85
15878036 CCAAGGATTC
* * * * ** *
15878046 TCATTATGCTTAGAAATTAGGTTCTCATCTCTAGGTTGAATTCTGGGCATCACTATAAGACTCGT
1 TCATTATGCTTGGAAATCAGGTTCTCATCTCCAGCTTGAATTCTTTGCATCTCTATAAGACTCGT
* * *
15878111 TGGCGTAAGTTTTAGGATCT
66 TGACGTAAGTTTCAAGATCT
**
15878131 TCATTATGCTTGGAAATCAGGTTCTCATCTCCAATTTGAATTCTTTGCATCTCTATAAGACTCGT
1 TCATTATGCTTGGAAATCAGGTTCTCATCTCCAGCTTGAATTCTTTGCATCTCTATAAGACTCGT
*
15878196 TGACGTAAGTTTCAAAATCT
66 TGACGTAAGTTTCAAGATCT
*** * * * * *
15878216 TCATTGCACTTGGAAATTAGATTCTCATCTCCAGCTTGAATTCTATGCATCTTTAT-AGAACTCA
1 TCATTATGCTTGGAAATCAGGTTCTCATCTCCAGCTTGAATTCTTTGCATCTCTATAAG-ACTCG
* * *
15878280 TTGATGTAAGTCTCATGATCT
65 TTGACGTAAGTTTCAAGATCT
* * * * * *
15878301 TCATTATGATTGG-AATCAGGTTCTCATCTCCAGCATGAATTTTTTGCATCCCCATGAGACTCGT
1 TCATTATGCTTGGAAATCAGGTTCTCATCTCCAGCTTGAATTCTTTGCATCTCTATAAGACTCGT
* *
15878365 TGATGCAAGTTTCAAGATCT
66 TGACGTAAGTTTCAAGATCT
15878385 T
1 T
15878386 TATTGTTTGA
Statistics
Matches: 211, Mismatches: 42, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
84 59 0.28
85 152 0.72
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (85 bp):
TCATTATGCTTGGAAATCAGGTTCTCATCTCCAGCTTGAATTCTTTGCATCTCTATAAGACTCGT
TGACGTAAGTTTCAAGATCT
Found at i:15878377 original size:169 final size:170
Alignment explanation
Indices: 15878058--15878390 Score: 418
Period size: 170 Copynumber: 2.0 Consensus size: 170
15878048 ATTATGCTTA
* * * * * * *
15878058 GAAATTAGGTTCTCATCTCTAGGTTGAATTCTGGGCATCACTATAAGACTCGTTGGCGTAAGTTT
1 GAAATTAGATTCTCATCTCCAGCTTGAATTCTAGGCATCACTATAAGACTCATTGACGTAAGTCT
* * ** * *
15878123 TAGGATCTTCATTATGCTTGGAAATCAGGTTCTCATCTCCAATTTGAATTCTTTGCATCTCTATA
66 CAGGATCTTCATTATGATTGGAAATCAGGTTCTCATCTCCAACATGAATTCTTTGCATCCCCATA
*
15878188 AGACTCGTTGACGTAAGTTTCAAAATCTTCATTGCACTTG
131 AGACTCGTTGACGCAAGTTTCAAAATCTTCATTGCACTTG
* ** *
15878228 GAAATTAGATTCTCATCTCCAGCTTGAATTCTATGCATCTTTAT-AGAACTCATTGATGTAAGTC
1 GAAATTAGATTCTCATCTCCAGCTTGAATTCTAGGCATCACTATAAG-ACTCATTGACGTAAGTC
* * *
15878292 TCATGATCTTCATTATGATTGG-AATCAGGTTCTCATCTCCAGCATGAATTTTTTGCATCCCCAT
65 TCAGGATCTTCATTATGATTGGAAATCAGGTTCTCATCTCCAACATGAATTCTTTGCATCCCCAT
* * * *
15878356 GAGACTCGTTGATGCAAGTTTCAAGATCTTTATTG
130 AAGACTCGTTGACGCAAGTTTCAAAATCTTCATTG
15878391 TTTGAAAACA
Statistics
Matches: 137, Mismatches: 25, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
169 68 0.50
170 69 0.50
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (170 bp):
GAAATTAGATTCTCATCTCCAGCTTGAATTCTAGGCATCACTATAAGACTCATTGACGTAAGTCT
CAGGATCTTCATTATGATTGGAAATCAGGTTCTCATCTCCAACATGAATTCTTTGCATCCCCATA
AGACTCGTTGACGCAAGTTTCAAAATCTTCATTGCACTTG
Found at i:15882846 original size:15 final size:15
Alignment explanation
Indices: 15882826--15882859 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
15882816 TGAAAATGTT
*
15882826 AGAAAAGGCTAAAAA
1 AGAAAAAGCTAAAAA
*
15882841 AGAAAAAGCTAAGAA
1 AGAAAAAGCTAAAAA
15882856 AGAA
1 AGAA
15882860 GAAAAGGTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.68, C:0.06, G:0.21, T:0.06
Consensus pattern (15 bp):
AGAAAAAGCTAAAAA
Found at i:15888172 original size:10 final size:10
Alignment explanation
Indices: 15888157--15888182 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
15888147 TTGACACATC
15888157 CTTATACCTT
1 CTTATACCTT
15888167 CTTATACCTT
1 CTTATACCTT
15888177 CTTATA
1 CTTATA
15888183 ATACATATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.27, G:0.00, T:0.50
Consensus pattern (10 bp):
CTTATACCTT
Found at i:15890999 original size:35 final size:35
Alignment explanation
Indices: 15890960--15891120 Score: 126
Period size: 35 Copynumber: 4.6 Consensus size: 35
15890950 TTTATCCCTA
*
15890960 TCATCTTTATTTCTCAACTTGCGACTTTGTCCCAT
1 TCATCTTTATTTCTCAACTTGCGACTTTGTCCCAG
* * * * * * *
15890995 TCATCTGTATTCCTCAACTTGCAACATAGTCTCGG
1 TCATCTTTATTTCTCAACTTGCGACTTTGTCCCAG
* * ** * *
15891030 TCATTTTTATTTTTTGACTTGTGACTTTGTCCTAG
1 TCATCTTTATTTCTCAACTTGCGACTTTGTCCCAG
* ** * **
15891065 TCATATTTATTTCTCAACTTATGACTTCGTCATAG
1 TCATCTTTATTTCTCAACTTGCGACTTTGTCCCAG
15891100 TCATCTTTATTTC-CTAACTTG
1 TCATCTTTATTTCTC-AACTTG
15891121 TAACTTCATC
Statistics
Matches: 95, Mismatches: 30, Indels: 2
0.75 0.24 0.02
Matches are distributed among these distances:
34 1 0.01
35 94 0.99
ACGTcount: A:0.20, C:0.23, G:0.11, T:0.47
Consensus pattern (35 bp):
TCATCTTTATTTCTCAACTTGCGACTTTGTCCCAG
Found at i:15891044 original size:105 final size:105
Alignment explanation
Indices: 15890930--15891154 Score: 240
Period size: 105 Copynumber: 2.1 Consensus size: 105
15890920 CCTAGTCGTC
* * * * * * *
15890930 TTTAATTTTTGATTTACGATTTTATCCCTA-TCATCTTTATTTCTCAACTTGCGACTTTGTCCCA
1 TTTATTTTTTGACTTACGACTTTAT-CCTAGTCATATTTATTTCTCAACTTACGACTTCGTCACA
* **
15890994 TTCATCTGTA-TTCCTCAACTTGCAACAT-AGTCTCGGTCATT
65 GTCATCTGTATTTCCT-AACTTGCAACATCA-TCTCAATCATT
** * * *
15891035 TTTATTTTTTGACTTGTGACTTTGTCCTAGTCATATTTATTTCTCAACTTATGACTTCGTCATAG
1 TTTATTTTTTGACTTACGACTTTATCCTAGTCATATTTATTTCTCAACTTACGACTTCGTCACAG
* * *
15891100 TCATCTTTATTTCCTAACTTGTAACTTCATCTCAATCATT
66 TCATCTGTATTTCCTAACTTGCAACATCATCTCAATCATT
15891140 TTTATTTTTTGACTT
1 TTTATTTTTTGACTT
15891155 GTAATTTCCT
Statistics
Matches: 99, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
104 4 0.04
105 89 0.90
106 6 0.06
ACGTcount: A:0.21, C:0.21, G:0.09, T:0.49
Consensus pattern (105 bp):
TTTATTTTTTGACTTACGACTTTATCCTAGTCATATTTATTTCTCAACTTACGACTTCGTCACAG
TCATCTGTATTTCCTAACTTGCAACATCATCTCAATCATT
Found at i:15891155 original size:105 final size:104
Alignment explanation
Indices: 15890956--15891156 Score: 253
Period size: 105 Copynumber: 1.9 Consensus size: 104
15890946 CGATTTTATC
* * * * *
15890956 CCTATCATCTTTATTTCTCAACTTGCGACTTTGTCCCATTCATCTGTATTCCTCAACTTGCAACA
1 CCTATCATATTTATTTCTCAACTTACGACTTCGTCACAGTCATCTGTATTCCTCAACTTGCAACA
**
15891021 TAGTCTCGGTCATTTTTATTTTTTGACTTGTGACTTTGT
66 TAGTCTCAATCATTTTTATTTTTTGACTTGTGACTTTGT
* * * *
15891060 CCTAGTCATATTTATTTCTCAACTTATGACTTCGTCATAGTCATCTTTATTTCCT-AACTTGTAA
1 CCTA-TCATATTTATTTCTCAACTTACGACTTCGTCACAGTCATCTGTA-TTCCTCAACTTGCAA
*
15891124 CTTCA-TCTCAATCATTTTTATTTTTTGACTTGT
64 CAT-AGTCTCAATCATTTTTATTTTTTGACTTGT
15891157 AATTTCCTCT
Statistics
Matches: 82, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
104 4 0.05
105 72 0.88
106 6 0.07
ACGTcount: A:0.20, C:0.22, G:0.09, T:0.48
Consensus pattern (104 bp):
CCTATCATATTTATTTCTCAACTTACGACTTCGTCACAGTCATCTGTATTCCTCAACTTGCAACA
TAGTCTCAATCATTTTTATTTTTTGACTTGTGACTTTGT
Found at i:15891179 original size:105 final size:105
Alignment explanation
Indices: 15890959--15891181 Score: 247
Period size: 105 Copynumber: 2.1 Consensus size: 105
15890949 TTTTATCCCT
* * * *
15890959 ATCATCTTTATTTCTCAACTTGCGACTTTGTCCCATTCATCTGTATTCCTCAACTTGCAACATAG
1 ATCATCTTTATTTCTCAACTTACGACTTCGTCACAGTCATCTGTATTCCTCAACTTGCAACATAG
** * *
15891024 TCTCGGTCATTTTTATTTTTTGACTTGTGACTTTGTCCTA
66 TCTCAATCATTTTTATTTTTTGACTTGTGAATTTCTCCTA
* * * * * * *
15891064 GTCATATTTATTTCTCAACTTATGACTTCGTCATAGTCATCTTTATTTCCT-AACTTGTAACTTC
1 ATCATCTTTATTTCTCAACTTACGACTTCGTCACAGTCATCTGTA-TTCCTCAACTTGCAACAT-
15891128 A-TCTCAATCATTTTTATTTTTTGACTTGT-AATTTC-CTCTCA
64 AGTCTCAATCATTTTTATTTTTTGACTTGTGAATTTCTC-CT-A
15891169 ATCATCTTTATTT
1 ATCATCTTTATTT
15891182 TTTGAGTTAT
Statistics
Matches: 97, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
103 1 0.01
104 6 0.06
105 84 0.87
106 6 0.06
ACGTcount: A:0.21, C:0.22, G:0.09, T:0.48
Consensus pattern (105 bp):
ATCATCTTTATTTCTCAACTTACGACTTCGTCACAGTCATCTGTATTCCTCAACTTGCAACATAG
TCTCAATCATTTTTATTTTTTGACTTGTGAATTTCTCCTA
Found at i:15891182 original size:35 final size:35
Alignment explanation
Indices: 15891100--15891186 Score: 120
Period size: 35 Copynumber: 2.5 Consensus size: 35
15891090 TTCGTCATAG
** *
15891100 TCATCTTTATTTCCTAACTTGTAACTTCATCTCAA
1 TCATCTTTATTTTTTGACTTGTAACTTCATCTCAA
* * *
15891135 TCATTTTTATTTTTTGACTTGTAATTTCCTCTCAA
1 TCATCTTTATTTTTTGACTTGTAACTTCATCTCAA
15891170 TCATCTTTATTTTTTGA
1 TCATCTTTATTTTTTGA
15891187 GTTATGGCTT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 45 1.00
ACGTcount: A:0.22, C:0.20, G:0.05, T:0.54
Consensus pattern (35 bp):
TCATCTTTATTTTTTGACTTGTAACTTCATCTCAA
Found at i:15891192 original size:105 final size:105
Alignment explanation
Indices: 15890959--15891227 Score: 233
Period size: 105 Copynumber: 2.6 Consensus size: 105
15890949 TTTTATCCCT
* ** * * * * * *
15890959 ATCATCTTTATTTCTCAACTTGCGACTTTGTCCCATTCATCTGTA-TTCCTCAACTTGCAACAT-
1 ATCATATTTATTTCTCAACTTATGACTTCGTCTCAGTCATCTTTATTTCCT-AACTTGTAACTTC
** * *
15891022 AGTCTCGGTCATTTTTATTTTTTGACTTGTGACTTTGTCCTA
65 A-TCTCAATCATTTTTATTTTTTGACTTGTGAATTTCTCCTA
*
15891064 GTCATATTTATTTCTCAACTTATGACTTCGTCAT-AGTCATCTTTATTTCCTAACTTGTAACTTC
1 ATCATATTTATTTCTCAACTTATGACTTCGTC-TCAGTCATCTTTATTTCCTAACTTGTAACTTC
15891128 ATCTCAATCATTTTTATTTTTTGACTTGT-AATTTC-CTCTCA
65 ATCTCAATCATTTTTATTTTTTGACTTGTGAATTTCTC-CT-A
* * ** * * * * * * *
15891169 ATCATCTTTATTTTTTGAGTTATGGCTTTGTCTCGGTTATTTTTATTTTCTAACTTGTA
1 ATCATATTTATTTCTCAACTTATGACTTCGTCTCAGTCATCTTTATTTCCTAACTTGTA
15891228 GCTTTGTCCT
Statistics
Matches: 132, Mismatches: 26, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
103 1 0.01
104 7 0.05
105 118 0.89
106 6 0.05
ACGTcount: A:0.20, C:0.20, G:0.10, T:0.50
Consensus pattern (105 bp):
ATCATATTTATTTCTCAACTTATGACTTCGTCTCAGTCATCTTTATTTCCTAACTTGTAACTTCA
TCTCAATCATTTTTATTTTTTGACTTGTGAATTTCTCCTA
Found at i:15894049 original size:16 final size:15
Alignment explanation
Indices: 15894022--15894051 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
15894012 TAAAAATAAT
15894022 AATTGAAAAAATTAG
1 AATTGAAAAAATTAG
15894037 AATTGAAATAAATTA
1 AATTGAAA-AAATTA
15894052 AATAAGAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.30
Consensus pattern (15 bp):
AATTGAAAAAATTAG
Found at i:15895780 original size:71 final size:71
Alignment explanation
Indices: 15895691--15895822 Score: 194
Period size: 71 Copynumber: 1.9 Consensus size: 71
15895681 ATTCATAGTT
*
15895691 TGAATAATTATGCTTGAATAAGAAACATTTGTTGAAAACAATTATGTAAC-AAAAGAGTTATGAC
1 TGAATAATTATGCTTGAATAA-AAACATTTGTTGAAAACAATTATATAACAAAAAGAGTTATGAC
15895755 TATTAAA
65 TATTAAA
* * * * *
15895762 TGAATAATTATGTTTGAATAAAAACATTTGTTTATAATAGTTATATAACAAAAAGAGTTAT
1 TGAATAATTATGCTTGAATAAAAACATTTGTTGAAAACAATTATATAACAAAAAGAGTTAT
15895823 AATTATTTAA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
70 23 0.43
71 31 0.57
ACGTcount: A:0.46, C:0.05, G:0.13, T:0.36
Consensus pattern (71 bp):
TGAATAATTATGCTTGAATAAAAACATTTGTTGAAAACAATTATATAACAAAAAGAGTTATGACT
ATTAAA
Found at i:15897276 original size:18 final size:18
Alignment explanation
Indices: 15897229--15897270 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
15897219 ACATCATATT
15897229 TATTGATGTAAACTGTTA
1 TATTGATGTAAACTGTTA
*
15897247 TTTTGATGTAAACTGTTA
1 TATTGATGTAAACTGTTA
15897265 TATTGA
1 TATTGA
15897271 GTTAAAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.31, C:0.05, G:0.17, T:0.48
Consensus pattern (18 bp):
TATTGATGTAAACTGTTA
Found at i:15898498 original size:44 final size:44
Alignment explanation
Indices: 15898434--15898522 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 44
15898424 TTCTAAAGTA
* *
15898434 TATACGCTAATTGAATATTTAAATCAAGAGATACTTTTTTGTAT
1 TATACGCTAATTGAAGATTTAAATCAAGAAATACTTTTTTGTAT
*
15898478 TATATGCTAATTGAAGATTTAAATCAAGAAATACTTTTTTGTAT
1 TATACGCTAATTGAAGATTTAAATCAAGAAATACTTTTTTGTAT
15898522 T
1 T
15898523 CATAATATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.37, C:0.08, G:0.11, T:0.44
Consensus pattern (44 bp):
TATACGCTAATTGAAGATTTAAATCAAGAAATACTTTTTTGTAT
Found at i:15903554 original size:20 final size:20
Alignment explanation
Indices: 15903529--15903575 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
15903519 ATTAATTTTG
15903529 ATTATTTTATTAAT-AAAATT
1 ATTATTTTA-TAATAAAAATT
*
15903549 ATTA-TTTATCATAAAAATT
1 ATTATTTTATAATAAAAATT
15903568 ATT-TTTTA
1 ATTATTTTA
15903576 AGTTTTTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 3 0.12
19 17 0.71
20 4 0.17
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (20 bp):
ATTATTTTATAATAAAAATT
Found at i:15903795 original size:3 final size:3
Alignment explanation
Indices: 15903787--15903835 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
15903777 GACAATATAC
15903787 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
15903835 T
1 T
15903836 CTTCCTACTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:15909221 original size:17 final size:18
Alignment explanation
Indices: 15909199--15909241 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
15909189 ATTTAATTTT
15909199 ATATTTACA-TAAAAATA
1 ATATTTACATTAAAAATA
*
15909216 ATATTTTATATTTAAAAATA
1 ATA-TTTACA-TTAAAAATA
15909236 ATATTT
1 ATATTT
15909242 TATTAATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 3 0.14
18 5 0.23
19 3 0.14
20 11 0.50
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (18 bp):
ATATTTACATTAAAAATA
Found at i:15910905 original size:1 final size:1
Alignment explanation
Indices: 15910899--15910930 Score: 64
Period size: 1 Copynumber: 32.0 Consensus size: 1
15910889 GTTGTTGTTG
15910899 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
15910931 AACTTAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:15912576 original size:15 final size:15
Alignment explanation
Indices: 15912556--15912588 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
15912546 ATGTGATTCT
*
15912556 TGAGATAGATAGAAC
1 TGAGATAGATAAAAC
15912571 TGAGATAGATAAAAC
1 TGAGATAGATAAAAC
15912586 TGA
1 TGA
15912589 ATTTCTATCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.48, C:0.06, G:0.24, T:0.21
Consensus pattern (15 bp):
TGAGATAGATAAAAC
Found at i:15920344 original size:2 final size:2
Alignment explanation
Indices: 15920337--15920366 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
15920327 AGGAACCCTT
*
15920337 TA TA TA TA TA TA TA TA TA TA TA TA AA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15920367 ATTAGGACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:15920580 original size:15 final size:15
Alignment explanation
Indices: 15920562--15920598 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
15920552 CCATGGGCGG
*
15920562 TTTTTTTATTTTTAT
1 TTTTTTTATTATTAT
*
15920577 TTTTATTATTATTAT
1 TTTTTTTATTATTAT
15920592 TTTTTTT
1 TTTTTTT
15920599 GTAGAGATGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTTTATTATTAT
Found at i:15926490 original size:144 final size:144
Alignment explanation
Indices: 15926237--15926513 Score: 308
Period size: 144 Copynumber: 1.9 Consensus size: 144
15926227 CTAAGATTAG
** * *
15926237 TTTTTCACAAAAAGCTCCAGATCATGTTTTGATATTATTTTATGATATTTGATGCATTAAAAATC
1 TTTTTCACAAAAAAATCCAGATCATATTTTGATATTATTTTATGATATTTGATGCATTAAAAACC
* * * * **
15926302 TTGATCATGCCTCAGTAGGTGTAAAATTACTAAAATGCTTTTTAGAAAAATCTTT-ATAATTTGA
66 TTGACCATGCATCAGAAGGTGTAAAATTACTAAAATACCCTTTAGAAAAAT-TTTCATAATTTGA
15926366 CCTTTCTAAAGTCAA
130 CCTTTCTAAAGTCAA
* * **
15926381 TTTTTCACAAAAAAATTCAGATCATATTTTGATATTATTTTAT-ATTTTTTGATGTGTTAAAAAC
1 TTTTTCACAAAAAAATCCAGATCATATTTTGATATTATTTTATGA-TATTTGATGCATTAAAAAC
* * * * * * **
15926445 CTTGACCATTCATTAGAAGGTGTGAAATT-GTCAAGATACCCTTTAGTAGTATTTTCATAATTTG
65 CTTGACCATGCATCAGAAGGTGTAAAATTACT-AAAATACCCTTTAGAAAAATTTTCATAATTTG
15926509 ACCTT
129 ACCTT
15926514 CTCCAGGTTG
Statistics
Matches: 108, Mismatches: 22, Indels: 6
0.79 0.16 0.04
Matches are distributed among these distances:
143 5 0.05
144 103 0.95
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.42
Consensus pattern (144 bp):
TTTTTCACAAAAAAATCCAGATCATATTTTGATATTATTTTATGATATTTGATGCATTAAAAACC
TTGACCATGCATCAGAAGGTGTAAAATTACTAAAATACCCTTTAGAAAAATTTTCATAATTTGAC
CTTTCTAAAGTCAA
Found at i:15932235 original size:118 final size:117
Alignment explanation
Indices: 15931996--15932430 Score: 474
Period size: 118 Copynumber: 3.7 Consensus size: 117
15931986 ATGCCAAGAG
* * * *
15931996 GTCTTATAAATCTTTAAATGCTCTTTATATCAGAGGCATTGAAACTTTGAAAATTTAAATATTTT
1 GTCTTACAAATCTTTGAATGCTCTTCATATCAGAGGCGTTGAAACTTTGAAAATTTAAATATTTT
* * * *
15932061 GCTTGAAGGT-TTTAGAAATTATGC-CTAGAGGTATTAGAGATTATGCATGAAA
66 GCTTGAAGGTCTTGA-AAATTATGCTCGA-AGGTATTAGAGATTATGCCTGGAA
* *
15932113 GTCTTACAAATCTTTGAATGCTCTTCATATTAGAGGCGTTGAAACTTTGAAATTTTAAAATATTT
1 GTCTTACAAATCTTTGAATGCTCTTCATATCAGAGGCGTTGAAACTTTGAAAATTT-AAATATTT
* * *
15932178 TGCTTGAAGGTCTTGAAAACTATGCTCGAAGGTATTAGAGGTTATGCCTGGAG
65 TGCTTGAAGGTCTTGAAAATTATGCTCGAAGGTATTAGAGATTATGCCTGGAA
* * * *
15932231 GTCTTACAAATCTTTGAATGCTCTTCGTATCAAAGGTGTTAAAACTTTGAAAATTTAAA-A---T
1 GTCTTACAAATCTTTGAATGCTCTTCATATCAGAGGCGTTGAAACTTTGAAAATTTAAATATTTT
* * * * * * *
15932292 GCTCGGAA-GTCTTGGAAATTATG-TTGGAGGTTTTAGAGATTATACTTGGAA
66 GCT-TGAAGGTCTTGAAAATTATGCTCGAAGGTATTAGAGATTATGCCTGGAA
** * * *
15932343 GTCTTACAAATCTTTGAATGCTCTTTGTATTAGAGGTGTTGAAACTTTAAAAATTTAAAATATTT
1 GTCTTACAAATCTTTGAATGCTCTTCATATCAGAGGCGTTGAAACTTTGAAAATTT-AAATATTT
**
15932408 TGCCCGAAGGTCTT-AAAGATTAT
65 TGCTTGAAGGTCTTGAAA-ATTAT
15932431 CTTAGGTGCT
Statistics
Matches: 270, Mismatches: 37, Indels: 22
0.82 0.11 0.07
Matches are distributed among these distances:
112 72 0.27
113 20 0.07
114 4 0.01
116 6 0.02
117 66 0.24
118 97 0.36
119 5 0.02
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (117 bp):
GTCTTACAAATCTTTGAATGCTCTTCATATCAGAGGCGTTGAAACTTTGAAAATTTAAATATTTT
GCTTGAAGGTCTTGAAAATTATGCTCGAAGGTATTAGAGATTATGCCTGGAA
Found at i:15932402 original size:230 final size:233
Alignment explanation
Indices: 15931984--15932421 Score: 587
Period size: 230 Copynumber: 1.9 Consensus size: 233
15931974 GTTTTGGAAA
* * * *
15931984 TTATGCCAAGAGGTCTTATAAATCTTTAAATGCTCTTTATATCAGAGGCATTGAAACTTTGAAAA
1 TTATGCCAAGAGGTCTTACAAATCTTTAAATGCTCTTCATATCAAAGGCATTAAAACTTTGAAAA
* * *
15932049 TTTAAATATTTTGCTTGAAGGTTTTAGAAATTATGCCTAGAGGTATTAGAGATTATGCATGAAAG
66 TTTAAATA--TTGCTGGAAGGTCTTAGAAATTATGCCTAGAGGTATTAGAGATTATACATGAAAG
* *
15932114 TCTTACAAATCTTTGAATGCTCTTCATATTAGAGGCGTTGAAACTTTGAAATTTTAAAATATTTT
129 TCTTACAAATCTTTGAATGCTCTTCATATTAGAGGCGTTGAAACTTTAAAAATTTAAAATATTTT
**
15932179 GCTTGAAGGTCTTGAAAACTATGCTCGAAGGTATTAGAGG
194 GCCCGAAGGTCTTGAAAACTATGCTCGAAGGTATTAGAGG
** * * **
15932219 TTATGCCTGGAGGTCTTACAAATCTTTGAATGCTCTTCGTATCAAAGGTGTTAAAACTTTGAAAA
1 TTATGCCAAGAGGTCTTACAAATCTTTAAATGCTCTTCATATCAAAGGCATTAAAACTTTGAAAA
* * * * * *
15932284 TTTAAA-A-TGCTCGGAA-GTCTTGGAAATTATG-TTGGAGGTTTTAGAGATTATACTTGGAAGT
66 TTTAAATATTGCT-GGAAGGTCTTAGAAATTATGCCTAGAGGTATTAGAGATTATACATGAAAGT
** *
15932345 CTTACAAATCTTTGAATGCTCTTTGTATTAGAGGTGTTGAAACTTTAAAAATTTAAAATATTTTG
130 CTTACAAATCTTTGAATGCTCTTCATATTAGAGGCGTTGAAACTTTAAAAATTTAAAATATTTTG
15932410 CCCGAAGGTCTT
195 CCCGAAGGTCTT
15932422 AAAGATTATC
Statistics
Matches: 176, Mismatches: 26, Indels: 7
0.84 0.12 0.03
Matches are distributed among these distances:
230 94 0.53
231 17 0.10
232 3 0.02
234 1 0.01
235 61 0.35
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.37
Consensus pattern (233 bp):
TTATGCCAAGAGGTCTTACAAATCTTTAAATGCTCTTCATATCAAAGGCATTAAAACTTTGAAAA
TTTAAATATTGCTGGAAGGTCTTAGAAATTATGCCTAGAGGTATTAGAGATTATACATGAAAGTC
TTACAAATCTTTGAATGCTCTTCATATTAGAGGCGTTGAAACTTTAAAAATTTAAAATATTTTGC
CCGAAGGTCTTGAAAACTATGCTCGAAGGTATTAGAGG
Found at i:15932617 original size:22 final size:22
Alignment explanation
Indices: 15932577--15932619 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
15932567 ATGGACTTGA
*
15932577 GTGCCAGTTGATCCGGGCTTAG
1 GTGCCAGTTGATCCAGGCTTAG
*
15932599 GTGCCAGTTGATCTAGGCTTA
1 GTGCCAGTTGATCCAGGCTTA
15932620 AAGTGCTAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.16, C:0.21, G:0.33, T:0.30
Consensus pattern (22 bp):
GTGCCAGTTGATCCAGGCTTAG
Found at i:15934136 original size:22 final size:23
Alignment explanation
Indices: 15934102--15934144 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
15934092 AACTTTAGCA
15934102 TTCTTCTTTCTTGA-ATTCTATC
1 TTCTTCTTTCTTGAGATTCTATC
15934124 TTCTT-TTTACTTGAGATTCTA
1 TTCTTCTTT-CTTGAGATTCTA
15934145 ACTGATGCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 3 0.16
22 10 0.53
23 6 0.32
ACGTcount: A:0.16, C:0.19, G:0.07, T:0.58
Consensus pattern (23 bp):
TTCTTCTTTCTTGAGATTCTATC
Found at i:15934461 original size:18 final size:18
Alignment explanation
Indices: 15934438--15934517 Score: 67
Period size: 18 Copynumber: 4.3 Consensus size: 18
15934428 TTTTCTTTAC
15934438 TCTTTTTTTTTCTTTTTT
1 TCTTTTTTTTTCTTTTTT
*
15934456 TCTTTTTTTTT-TTGCTCTT
1 TCTTTTTTTTTCTT--TTTT
*
15934475 TCTTTTTCTTTCCCTTTTTT
1 TCTTTTT-TTT-TCTTTTTT
*
15934495 T-TTTTGCTTTTCTTTTTT
1 TCTTTT-TTTTTCTTTTTT
15934513 T-TTTT
1 TCTTTT
15934518 GAAACATTTG
Statistics
Matches: 51, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
17 2 0.04
18 23 0.45
19 17 0.33
20 7 0.14
22 2 0.04
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (18 bp):
TCTTTTTTTTTCTTTTTT
Found at i:15934481 original size:33 final size:33
Alignment explanation
Indices: 15934423--15934517 Score: 108
Period size: 33 Copynumber: 3.0 Consensus size: 33
15934413 AAGGTGCTTA
* * * *
15934423 TCTTCTTTTCTTTACTCTTTTTTTTTCTTTTTT
1 TCTTTTTTTTTTTGCTCTTTCTTTTTCTTTTTT
*
15934456 TCTTTTTTTTTTTGCTCTTTCTTTTTC--TTTC
1 TCTTTTTTTTTTTGCTCTTTCTTTTTCTTTTTT
*
15934487 CCTTTTTTTTTTTGCT-TTTCTTTTT-TTTTTT
1 TCTTTTTTTTTTTGCTCTTTCTTTTTCTTTTTT
15934518 GAAACATTTG
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
30 9 0.17
31 21 0.40
33 23 0.43
ACGTcount: A:0.01, C:0.17, G:0.02, T:0.80
Consensus pattern (33 bp):
TCTTTTTTTTTTTGCTCTTTCTTTTTCTTTTTT
Found at i:15937428 original size:123 final size:123
Alignment explanation
Indices: 15937199--15937429 Score: 270
Period size: 123 Copynumber: 1.9 Consensus size: 123
15937189 TTTTTGATGC
* * * *
15937199 ATTTGAAATCACAGTAGTACCTTAGAAGGTGTGAAATTATCAAAATATCTATTAAAGGTATTTTT
1 ATTTGAAATCACAGTAGTACCTAAGAAGGTGTGAAATTATCAAAATACCCATTAAAGGTATTTTC
* * ** *
15937264 GTAATTTGACTTTCTCAAGCTTGGATTTTTATAAAATTTTTCATATATTAAATTCATA
66 ATAATTTGACTTTCTCAAGCTTAGATTTGCATAAAACTTTTCATATATTAAATTCATA
* * * *
15937322 ATTTGAAATCATAGTAGTATCCTAAG-ATGTGTGAAATTA-CGAAAATACCCCTTAGAGGTATTT
1 ATTTGAAATCACAGTAGTA-CCTAAGAAGGTGTGAAATTATC-AAAATACCCATTAAAGGTATTT
* * *
15937385 TCATAATTT-ATCTTTTTCAAGTTTAGATTTGCATGAAACTTTTCA
64 TCATAATTTGA-CTTTCTCAAGCTTAGATTTGCATAAAACTTTTCA
15937430 GATTTTAATT
Statistics
Matches: 89, Mismatches: 16, Indels: 6
0.80 0.14 0.05
Matches are distributed among these distances:
122 2 0.02
123 82 0.92
124 5 0.06
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.41
Consensus pattern (123 bp):
ATTTGAAATCACAGTAGTACCTAAGAAGGTGTGAAATTATCAAAATACCCATTAAAGGTATTTTC
ATAATTTGACTTTCTCAAGCTTAGATTTGCATAAAACTTTTCATATATTAAATTCATA
Found at i:15943451 original size:16 final size:16
Alignment explanation
Indices: 15943427--15943461 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
15943417 CTTGATGACA
*
15943427 TATCTTTAACAATTGG
1 TATCCTTAACAATTGG
*
15943443 TATCCTTAACGATTGG
1 TATCCTTAACAATTGG
15943459 TAT
1 TAT
15943462 GAGCTTGTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (16 bp):
TATCCTTAACAATTGG
Found at i:15951824 original size:21 final size:18
Alignment explanation
Indices: 15951787--15951825 Score: 51
Period size: 21 Copynumber: 2.0 Consensus size: 18
15951777 ACATATTATT
15951787 TTAATAAAATTTTCAAAA
1 TTAATAAAATTTTCAAAA
15951805 TTAATTAAAACTTTATCAAAA
1 TTAA-TAAAA-TTT-TCAAAA
15951826 AGATAGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 5 0.28
20 3 0.17
21 6 0.33
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (18 bp):
TTAATAAAATTTTCAAAA
Found at i:15953804 original size:22 final size:24
Alignment explanation
Indices: 15953746--15953804 Score: 59
Period size: 27 Copynumber: 2.4 Consensus size: 24
15953736 GAGAATGTGT
* *
15953746 TTTTTTTTTTGTTTTGTTTGTTGA
1 TTTTTTGTTTGTTTTGTGTGTTGA
15953770 TTTTTTTGGGTTTGTTTTGTGT-TTGA
1 -TTTTTT--GTTTGTTTTGTGTGTTGA
15953796 -TTTTTGTTT
1 TTTTTTGTTT
15953805 TGGCAATTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
22 4 0.13
24 5 0.17
25 6 0.20
26 4 0.13
27 11 0.37
ACGTcount: A:0.03, C:0.00, G:0.20, T:0.76
Consensus pattern (24 bp):
TTTTTTGTTTGTTTTGTGTGTTGA
Found at i:15961300 original size:18 final size:18
Alignment explanation
Indices: 15961279--15961321 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
15961269 AACTGATCAA
15961279 TAACCAATAACCAATAAT
1 TAACCAATAACCAATAAT
*
15961297 TAACCAATAGCCAATAAT
1 TAACCAATAACCAATAAT
15961315 TAACCAA
1 TAACCAA
15961322 ATCAAATAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.53, C:0.23, G:0.02, T:0.21
Consensus pattern (18 bp):
TAACCAATAACCAATAAT
Found at i:15989070 original size:13 final size:13
Alignment explanation
Indices: 15989052--15989082 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
15989042 GGTATTATTT
15989052 TGATTTTTGAATA
1 TGATTTTTGAATA
15989065 TGATTTTTGAATA
1 TGATTTTTGAATA
15989078 TGATT
1 TGATT
15989083 AGGTATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.16, T:0.55
Consensus pattern (13 bp):
TGATTTTTGAATA
Found at i:15991937 original size:9 final size:9
Alignment explanation
Indices: 15991923--15991991 Score: 61
Period size: 9 Copynumber: 7.8 Consensus size: 9
15991913 CAAAATTAGT
15991923 AACAAAATA
1 AACAAAATA
15991932 AACAAAATA
1 AACAAAATA
* *
15991941 AGCAACAT-
1 AACAAAATA
15991949 AACAAAATA
1 AACAAAATA
*
15991958 AGCAAACATA
1 AACAAA-ATA
* *
15991968 AGCAACAT-
1 AACAAAATA
15991976 AACAAAATA
1 AACAAAATA
*
15991985 AGCAAAA
1 AACAAAA
15991992 AAGATGCAAT
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
8 12 0.25
9 28 0.58
10 8 0.17
ACGTcount: A:0.68, C:0.16, G:0.06, T:0.10
Consensus pattern (9 bp):
AACAAAATA
Found at i:15991954 original size:17 final size:18
Alignment explanation
Indices: 15991929--15991991 Score: 76
Period size: 17 Copynumber: 3.6 Consensus size: 18
15991919 TAGTAACAAA
*
15991929 ATAAACAAAATAAGCAAC
1 ATAAGCAAAATAAGCAAC
15991947 ATAA-CAAAATAAGCAAAC
1 ATAAGCAAAATAAGC-AAC
* *
15991965 ATAAGCAACATAA-CAAA
1 ATAAGCAAAATAAGCAAC
15991982 ATAAGCAAAA
1 ATAAGCAAAA
15991992 AAGATGCAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
17 21 0.52
18 12 0.30
19 7 0.17
ACGTcount: A:0.67, C:0.16, G:0.06, T:0.11
Consensus pattern (18 bp):
ATAAGCAAAATAAGCAAC
Found at i:15991976 original size:27 final size:26
Alignment explanation
Indices: 15991922--15991991 Score: 122
Period size: 27 Copynumber: 2.7 Consensus size: 26
15991912 TCAAAATTAG
*
15991922 TAACAAAATAAACAAAATAAGCAACA
1 TAACAAAATAAGCAAAATAAGCAACA
15991948 TAACAAAATAAGCAAACATAAGCAACA
1 TAACAAAATAAGCAAA-ATAAGCAACA
15991975 TAACAAAATAAGCAAAA
1 TAACAAAATAAGCAAAA
15991992 AAGATGCAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
26 16 0.38
27 26 0.62
ACGTcount: A:0.67, C:0.16, G:0.06, T:0.11
Consensus pattern (26 bp):
TAACAAAATAAGCAAAATAAGCAACA
Found at i:15994679 original size:34 final size:34
Alignment explanation
Indices: 15994628--15994700 Score: 87
Period size: 34 Copynumber: 2.2 Consensus size: 34
15994618 CTAATTAAGT
* *
15994628 AAAAT-TAGAGTTGAAATGA-AAAGTAAAGAACCA
1 AAAATGTAAAGTTCAAATGAGAAAGTAAA-AACCA
**
15994661 AAAATGTAAAGTTCAAATGAGTTAGTAAAAACCA
1 AAAATGTAAAGTTCAAATGAGAAAGTAAAAACCA
15994695 AAAATG
1 AAAATG
15994701 AATTGCAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
33 5 0.15
34 23 0.68
35 6 0.18
ACGTcount: A:0.56, C:0.07, G:0.16, T:0.21
Consensus pattern (34 bp):
AAAATGTAAAGTTCAAATGAGAAAGTAAAAACCA
Found at i:16012872 original size:21 final size:21
Alignment explanation
Indices: 16012823--16012873 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
16012813 AATTGAGCAA
16012823 CAACAGCAATGAATTAATGAC
1 CAACAGCAATGAATTAATGAC
** *
16012844 CAGGAGCAATG-CTTCAATGAC
1 CAACAGCAATGAATT-AATGAC
16012865 CAACAGCAA
1 CAACAGCAA
16012874 AGACTTATTG
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
20 2 0.08
21 22 0.92
ACGTcount: A:0.43, C:0.24, G:0.18, T:0.16
Consensus pattern (21 bp):
CAACAGCAATGAATTAATGAC
Found at i:16019645 original size:161 final size:159
Alignment explanation
Indices: 16019244--16021886 Score: 1520
Period size: 161 Copynumber: 16.6 Consensus size: 159
16019234 GGCAATAATG
* * * * ** * * *
16019244 AAGTTTAAACATTTAGACAAATTTAATATCATGTAATAAAAGCTATCTAAACTGCTAAAATAGAA
1 AAGTTCAATCATTCAGACAAGTTTAATATCATGT-ATTGAAGCTATCTAAACTGTTAAAACATAA
* * * ** * *
16019309 GAATAACT-CAAAATTTGCATTTTTGCCATTTAACGTTACAAAAAGTCCTAAACAGACATAAAGC
65 TAATAAATAC-AAATTTGCATTTTTGCCTTTTAACAATACAAAAAGTGCTAAACAGACATAAAGT
* * **
16019373 ACAATTTATTCATACATATCAAATTGTGAAAACC
129 A-ACTTT-TTCACACATATC-AATCATGAAAACC
* *
16019407 AAGTTCAATTATTCAGACAAGTTTAATATCATGTATTTAAGCTATCTAAACTGTTAAAACATAA-
1 AAGTTCAATCATTCAGACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAACATAAT
* * * * * *
16019471 ATATAACTACAAATTTACATTTTTACC-TTTAACAATACAATAAAGTCCTAAAAACACATTAATA
66 A-ATAAATACAAATTTGCATTTTTGCCTTTTAACAATACAA-AAAGTGCTAAACAGACA-TAA-A
*
16019535 GTAACTTTTTCACACATATCAATCATGGAAACC
127 GTAACTTTTTCACACATATCAATCATGAAAACC
* * * * * * * * * *
16019568 AAGTTCAATCATTCAAAGAAATTTAATACCATGTATTAAAGATATTTAAACTATTCAAACAGAAT
1 AAGTTCAATCATTCAGACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAACATAAT
* **** *
16019633 AATAAATACAAATTTGCATTTTTACCTTTTAATGGCAC-AAAAGTGCTAAACGGACATAAACGAT
66 AATAAATACAAATTTGCATTTTTGCCTTTTAACAATACAAAAAGTGCTAAACAGACATAAA-G-T
*
16019697 AACTTTTTCACACATATCAATCGTGAAAACC
129 AACTTTTTCACACATATCAATCATGAAAACC
* * * * *
16019728 AAGTTCAATCATTTAGATAAGTTTATTATCATGTATTGAAGCTATCTAAATTTTTAAAACATAA-
1 AAGTTCAATCATTCAGACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAACATAAT
* * * ** ** * *
16019792 ATATAACTATAAAATAACATTTTTGCCTTTTAACAGCATAAAAAGTGCTAAACAGAGATAAAATG
66 A-ATAAATACAAATTTGCATTTTTGCCTTTTAACAATACAAAAAGTGCTAAACAGACAT-AAA--
* * * **
16019857 GCAACTTTTTCCCACATATCAAT-AGTTAAAAAG
127 GTAACTTTTTCACACATATCAATCA-TGAAAACC
* * * * *
16019890 AAATTCAATCATTCAAATAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTCAAATATAAT
1 AAGTTCAATCATTCAGACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAACATAAT
* * *
16019955 AATAAATACAAATTTGCAATTTTT-CC-TTTACACAACATAAAAA-TGCTAAACAGAGATAAACA
66 AATAAATACAAATTTGC-ATTTTTGCCTTTTA-ACAATACAAAAAGTGCTAAACAGACAT-AA-A
* * *
16020017 ATAACTTTTTCTCACATATCAA-CTAT-AGACACC
127 GTAACTTTTTCACACATATCAATC-ATGA-AAACC
* * **
16020050 AAGTTCAATCATTCAGACAAGTTT-ATATCATGTATTAAAGCTACCTAAACTGTTAAAGTATAAT
1 AAGTTCAATCATTCAGACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAACATAAT
* * * * ** * *
16020114 AATAAATGCAATTTTGTATTTTTGCCTTTTATCGGTGCAAAAAGTGCT--ACATGAAAATAAAAG
66 AATAAATACAAATTTGCATTTTTGCCTTTTAACAATACAAAAAGTGCTAAACA-G-ACAT-AAAG
* * * * *
16020177 ATAACTTTTTCACATATATCAACCGTGTAAATC
128 -TAACTTTTTCACACATATCAATCATGAAAACC
* * * *
16020210 AGGTTCAATCATTCAGACAAGTTTAATATCATGTATTGAAGTTATCTAAACTATTAAAATATAAT
1 AAGTTCAATCATTCAGACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAACATAAT
* * * *** * *
16020275 AATAAGTATAAATTTGCATTTTTCCCTTTTAACGGCACAAAAAGTGCTAAATAGAGATAAACGAT
66 AATAAATACAAATTTGCATTTTTGCCTTTTAACAATACAAAAAGTGCTAAACAGACATAAA-G-T
*
16020340 AACTTTTTCACACATATCAACCATGAAAACC
129 AACTTTTTCACACATATCAATCATGAAAACC
* * * ** * *
16020371 AAGTTCATGTCATGT-ATTA-AAGCTATCTAA-A-C--G-GTT-AAAATATATTAA----TAAAT
1 AAGTTCA-ATCAT-TCA-GACAAG-T-T-TAATATCATGTATTGAAGCTATCTAAACTGTTAAA-
** ** * * ** **** * * * *
16020424 ACA-AAT--T---TGTATTTTTGCCTTCTAACGGCATAAAAAGTCCTAAATAGAT-ATAAAC-G-
59 ACATAATAATAAATACAAATTTGCATTTTTGCCTTTTAACAA-TAC-AAAAAG-TGCTAAACAGA
* * ** *
16020480 -----A-TAACTTTTTCGCACAT--CTATTGTGGAAACC
121 CATAAAGTAACTTTTTCACACATATCAATCATGAAAACC
** * * * *
16020511 AAGTTCAATCATT-AGGGTAAGTTTAATATCATGTATTAAATCTATCTAAACTGCTAAAATATAA
1 AAGTTCAATCATTCA-GACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAACATAA
** * * ** * * *
16020575 TAATAAATACAAATTTGCATTTTTGCCTTTTAATGACATAAAAAGTATTAAACAAAGATACATGA
65 TAATAAATACAAATTTGCATTTTTGCCTTTTAACAATACAAAAAGTGCTAAACAGACATA-AAG-
*
16020640 TAACTTTTTCACACATATCAATTATGAAAACC
128 TAACTTTTTCACACATATCAATCATGAAAACC
** * *
16020672 AAGTTCAATCATTTGGACAAGTTTAATATCATGTATTGAAGCTATCTAAATTGTTAAAATATAAT
1 AAGTTCAATCATTCAGACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAACATAAT
* * ** * ** * * * *
16020737 AGTAAATGCAAATTTATATTTTTACCTTTTAATGACACAAAAAGTGTTAAACAAAGATAAATGGT
66 AATAAATACAAATTTGCATTTTTGCCTTTTAACAATACAAAAAGTGCTAAACAGACATAAA--GT
** * *
16020802 AACTTTTTTGCACATATCAACCATAAAAACC
129 AACTTTTTCACACATATCAATCATGAAAACC
* * * *
16020833 AAGTTCAATCATTCAGACAAGTTTAATATCATATATTGAAACTATCTAAACTTTTAAAATATAAT
1 AAGTTCAATCATTCAGACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAACATAAT
** * ** * * * * * *
16020898 AATAAATGTAATTTTTTA-TTTTGACTTTTTCACGACACAAAAAGTTCTAAACAGATATAAATGG
66 AATAAATACAAATTTGCATTTTTG-CCTTTTAACAATACAAAAAGTGCTAAACAGACATAAA--G
* * ** *
16020962 TAACTTTTGCTCACATATCAATTGTGAAAACT
128 TAACTTTTTCACACATATCAATCATGAAAACC
** * * * * * *
16020994 AAGTTCAATCATTTGGAGAAGTTTATTATAATGTATTGAAGCTATCTAAGCTGTTAAAATAGAAT
1 AAGTTCAATCATTCAGACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAACATAAT
* * * * * * * *
16021059 AATAAATGCAAATTTGTATTTTGGCCTTTTAGCAACATAAAAAGTGCTAAACAAACATAAACGAC
66 AATAAATACAAATTTGCATTTTTGCCTTTTAACAATACAAAAAGTGCTAAACAGACATAAA-G-T
* * *
16021124 AACTTTTTCACACATATAAATCATGGAAAGC
129 AACTTTTTCACACATATCAATCATGAAAACC
* * * * * * *
16021155 AAGTTCAATCATT-TGAAAAAGTTTAATGTCAGGTATTTAAGCTACCTAAACTGTTAAAATATAA
1 AAGTTCAATCATTCAG-ACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAACATAA
* * * * ** ** * ** *
16021219 -ATGTAACTATAAAATTATATTTTT-CCCCTTAACGATGTAACAAAGTCCTAAA-AGGACATAAA
65 TA-ATAAATACAAATTTGCATTTTTGCCTTTTAACAATACAA-AAAGTGCTAAACA-GACAT-AA
* ** *
16021281 CAGTAATTTTTTTGCACATATCAATCATGAAAACT
126 -AGTAACTTTTTCACACATATCAATCATGAAAACC
* * * * * ** * *
16021316 AAGTTTAATTATTCAAACAAGTTTAATATTATGTATTGAAACTATCTAAACCATTAAAATAGAAT
1 AAGTTCAATCATTCAGACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAACATAAT
* * *** * * *
16021381 AATAAATGCAAATTTGCATTTTAG-CTTTTCAACCGCAC-AAAAGATCCTAAATAAACATAAACG
66 AATAAATACAAATTTGCATTTTTGCCTTTT-AACAATACAAAAAG-TGCTAAACAGACATAAA--
* * *
16021444 GTAACTTTTTTCACACATATC-AGCTATGCAAACT
127 GTAAC-TTTTTCACACATATCAATC-ATGAAAACC
* * * * * * *
16021478 AAGTTCAATAATT-TGAACAAGTTTAATATCATATATTGAAGCTATCTAAGCTGTTAAAATAGAT
1 AAGTTCAATCATTCAG-ACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAACATAA
* * * * *** * * * *
16021542 TAATAAACATAAATTTTCATTTTGGCC-TTTAACGGCACAAAAAAGTGGTAAATAGATATAAGCG
65 TAATAAATACAAATTTGCATTTTTGCCTTTTAACAATAC-AAAAAGTGCTAAACAGACATAA-AG
* *
16021606 ATAACTTTTTCACACATATCAATCGTGGAAACC
128 -TAACTTTTTCACACATATCAATCATGAAAACC
* * ** * *
16021639 AAGTTTAATTATTTGGACAAGTTTAATATAATGTATTTAAGCTATCTAAACTGTTAAAACATAA-
1 AAGTTCAATCATTCAGACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAACATAAT
** * * ** * * * *
16021703 ATATACCTAAAAAATTAAAATTTTGCC-CTTAACAGCATA-ACAAAA-TCCTAAA-AGATATAAA
66 A-ATAAATACAAATTTGCATTTTTGCCTTTTAACA--ATACA-AAAAGTGCTAAACAGACATAAA
* *
16021764 TGGTAACTTTTTCACACATATCAA-CTGTGGAAACC
127 --GTAACTTTTTCACACATATCAATC-ATGAAAACC
** * * * *
16021799 AAGTTCAATCATTTGGGCAAGTTTAATATCATGTATTGAAGCTATCCAAACTATTGAAACA-AGA
1 AAGTTCAATCATTCAGACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAACATA-A
* * * *
16021863 TAATAACTGCATATTTACATTTTT
65 TAATAAATACAAATTTGCATTTTT
16021887 ATCCTTTAAT
Statistics
Matches: 1945, Mismatches: 423, Indels: 227
0.75 0.16 0.09
Matches are distributed among these distances:
136 3 0.00
137 2 0.00
138 4 0.00
139 7 0.00
140 17 0.01
141 2 0.00
142 23 0.01
145 3 0.00
146 7 0.00
148 2 0.00
149 10 0.01
150 15 0.01
151 17 0.01
152 9 0.00
153 2 0.00
155 7 0.00
156 2 0.00
158 10 0.01
159 92 0.05
160 363 0.19
161 951 0.49
162 330 0.17
163 59 0.03
164 5 0.00
165 3 0.00
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (159 bp):
AAGTTCAATCATTCAGACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAACATAAT
AATAAATACAAATTTGCATTTTTGCCTTTTAACAATACAAAAAGTGCTAAACAGACATAAAGTAA
CTTTTTCACACATATCAATCATGAAAACC
Found at i:16019958 original size:322 final size:320
Alignment explanation
Indices: 16019260--16021915 Score: 1988
Period size: 322 Copynumber: 8.3 Consensus size: 320
16019250 AAACATTTAG
* ** * * * *
16019260 ACAAATTTAATATCATGTAATAAAAGCTATCTAAACTGCTAAAATAGAAGAATAACT-CAAAATT
1 ACAAGTTTAATATCATGT-ATTGAAGCTATCTAAACTGTTAAAATATAATAATAAATAC-AAATT
* * ** * * *
16019324 TGCATTTTTGCCATTTAACGTTACAAAAAGTCCTAAACAGACATAAA-GCACAA-TTTATTCATA
64 TGCATTTTTACCTTTTAACGGCAC-AAAAGTGCTAAACAGACATAAACG-ATAACTTT-TTCACA
* * * *
16019387 CATATCAAATTGTGAAAACCAAGTTCAATTATTCAGACAAGTTTAATATCATGTATTTAAGCTAT
126 CATATC-AATCGTGAAAACCAAGTTCAATCATTTAGACAAGTTTAATATCATGTATTGAAGCTAT
* * * ** *
16019452 CTAAACTGTTAAAACATAAATATAACTACAAATTTACATTTTTACC-TTTAACAATACAATAAAG
190 CTAAACTGTTAAAACATAAATATAAATACAAATTTATATTTTTGCCTTTTAACAGCATAA-AAAG
* * * * *
16019516 TCCTAAAAACACATTAATAGTAACTTTTTCACACATATCAATCATGGAAACCAAGTTCAATCATT
254 TCCTAAACAGACATAAATGGTAACTTTTTCACACATATCAAT-ATGGAAAACAAGTTCAATCATT
16019581 CAA
318 CAA
* * * * * * * * * *
16019584 AGAAATTTAATACCATGTATTAAAGATATTTAAACTATTCAAACAGAATAATAAATACAAATTTG
1 ACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAATATAATAATAAATACAAATTTG
* *
16019649 CATTTTTACCTTTTAATGGCACAAAAGTGCTAAACGGACATAAACGATAACTTTTTCACACATAT
66 CATTTTTACCTTTTAACGGCACAAAAGTGCTAAACAGACATAAACGATAACTTTTTCACACATAT
* * *
16019714 CAATCGTGAAAACCAAGTTCAATCATTTAGATAAGTTTATTATCATGTATTGAAGCTATCTAAAT
131 CAATCGTGAAAACCAAGTTCAATCATTTAGACAAGTTTAATATCATGTATTGAAGCTATCTAAAC
* * * * * * *
16019779 TTTTAAAACATAAATATAACTATAAAATAACATTTTTGCCTTTTAACAGCATAAAAAGTGCTAAA
196 TGTTAAAACATAAATATAAATACAAATTTATATTTTTGCCTTTTAACAGCATAAAAAGTCCTAAA
* * * ** * *
16019844 CAGAGATAAAATGGCAACTTTTTCCCACATATCAATAGTTAAAAAGAAATTCAATCATTCAA
261 CAGACAT-AAATGGTAACTTTTTCACACATATCAATA-TGGAAAACAAGTTCAATCATTCAA
* *
16019906 ATAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTCAAATATAATAATAAATACAAATTTG
1 ACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAATATAATAATAAATACAAATTTG
** * * * * *
16019971 CAATTTTT-CC-TTTACACAACATAAAAATGCTAAACAGAGATAAACAATAACTTTTTCTCACAT
66 C-ATTTTTACCTTTTA-ACGGCACAAAAGTGCTAAACAGACATAAACGATAACTTTTTCACACAT
* * *
16020034 ATCAA-C-T-ATAGACACCAAGTTCAATCATTCAGACAAGTTT-ATATCATGTATTAAAGCTACC
129 ATCAATCGTGA-A-A-ACCAAGTTCAATCATTTAGACAAGTTTAATATCATGTATTGAAGCTATC
** * * * * * ***
16020095 TAAACTGTTAAAGTAT-AATAATAAATGCAATTTTGTATTTTTGCCTTTTATCGGTGCAAAAAGT
191 TAAACTGTTAAAACATAAAT-ATAAATACAAATTTATATTTTTGCCTTTTAACAGCATAAAAAGT
* * * * * ** * * *
16020159 GCT--ACATGAAAATAAAAGATAACTTTTTCACATATATCAACCGTGTAAATCAGGTTCAATCAT
255 CCTAAACA-G-ACATAAATGGTAACTTTTTCACACATATCAA-TATGGAAAACAAGTTCAATCAT
*
16020222 TCAG
317 TCAA
* * * *
16020226 ACAAGTTTAATATCATGTATTGAAGTTATCTAAACTATTAAAATATAATAATAAGTATAAATTTG
1 ACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAATATAATAATAAATACAAATTTG
* * *
16020291 CATTTTTCCCTTTTAACGGCACAAAAAGTGCTAAATAGAGATAAACGATAACTTTTTCACACATA
66 CATTTTTACCTTTTAACGGCAC-AAAAGTGCTAAACAGACATAAACGATAACTTTTTCACACATA
* * *
16020356 TCAACCATGAAAACCAAG-T---TCA--T------G-------TCATGTATTAAAGCTATCTAAA
130 TCAATCGTGAAAACCAAGTTCAATCATTTAGACAAGTTTAATATCATGTATTGAAGCTATCTAAA
* * * * * *
16020402 CGGTTAAAATAT-ATTAATAAATACAAATTTGTATTTTTGCCTTCTAACGGCATAAAAAGTCCTA
195 CTGTTAAAACATAAAT-ATAAATACAAATTTATATTTTTGCCTTTTAACAGCATAAAAAGTCCTA
* * * * * * * * * *
16020466 AATAGATATAAACGATAACTTTTTCGCACATCT-ATTGTGGAAACCAAGTTCAATCATT-AGG
259 AACAGACATAAATGGTAACTTTTTCACACATATCAATATGGAAAACAAGTTCAATCATTCA-A
** * * *
16020527 GTAAGTTTAATATCATGTATTAAATCTATCTAAACTGCTAAAATATAATAATAAATACAAATTTG
1 ACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAATATAATAATAAATACAAATTTG
* * * * ** * * * *
16020592 CATTTTTGCCTTTTAATGACATAAAAAGTATTAAACAAAGATACATGATAACTTTTTCACACATA
66 CATTTTTACCTTTTAACGGCA-CAAAAGTGCTAAACAGACATAAACGATAACTTTTTCACACATA
** *
16020657 TCAATTATGAAAACCAAGTTCAATCATTTGGACAAGTTTAATATCATGTATTGAAGCTATCTAAA
130 TCAATCGTGAAAACCAAGTTCAATCATTTAGACAAGTTTAATATCATGTATTGAAGCTATCTAAA
* * * * * * **
16020722 TTGTTAAAATAT-AATAGTAAATGCAAATTTATATTTTTACCTTTTAA-TGACACAAAAAGTGTT
195 CTGTTAAAACATAAATA-TAAATACAAATTTATATTTTTGCCTTTTAACAG-CATAAAAAGTCCT
* * ** * * *
16020785 AAACAAAGATAAATGGTAACTTTTTTGCACATATCAACCAT-AAAAACCAAGTTCAATCATTCAG
258 AAACAGACATAAATGGTAACTTTTTCACACATATCAA-TATGGAAAA-CAAGTTCAATCATTCAA
* * * ** * *
16020849 ACAAGTTTAATATCATATATTGAAACTATCTAAACTTTTAAAATATAATAATAAATGTAATTTTT
1 ACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAATATAATAATAAATACAAATTTG
* * * * * * * * * * *
16020914 TATTTTGACTTTTTCACGACACAAAAAGTTCTAAACAGATATAAATGGTAACTTTTGCTCACATA
66 CATTTTTACCTTTTAACGGCAC-AAAAGTGCTAAACAGACATAAACGATAACTTTTTCACACATA
* * * * * * *
16020979 TCAATTGTGAAAACTAAGTTCAATCATTTGGAGAAGTTTATTATAATGTATTGAAGCTATCTAAG
130 TCAATCGTGAAAACCAAGTTCAATCATTTAGACAAGTTTAATATCATGTATTGAAGCTATCTAAA
* * * * * *
16021044 CTGTT-AAA-ATAGAATAATAAATGCAAATTTGTATTTTGGCCTTTTAGCAACATAAAAAGTGCT
195 CTGTTAAAACATA-AAT-ATAAATACAAATTTATATTTTTGCCTTTTAACAGCATAAAAAGTCCT
* * ** * * *
16021107 AAACAAACATAAACGACAACTTTTTCACACATATAAATCATGGAAAGCAAGTTCAATCATTTGAA
258 AAACAGACATAAATGGTAACTTTTTCACACATATCAAT-ATGGAAAACAAGTTCAATCA-TTCAA
* * * * * * * *
16021172 A-AAGTTTAATGTCAGGTATTTAAGCTACCTAAACTGTTAAAATATAA-ATGTAACTATAAAATT
1 ACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAATATAATA-ATAAATACAAATTT
** ** * * * **
16021235 ATATTTTT-CCCCTTAACGATGTA-ACAAAGTCCTAAA-AGGACATAAAC-AGTAATTTTTTTGC
65 GCATTTTTACCTTTTAACG--GCACA-AAAGTGCTAAACA-GACATAAACGA-TAACTTTTTCAC
* * * * * * * *
16021296 ACATATCAATCATGAAAACTAAGTTTAATTATTCAAACAAGTTTAATATTATGTATTGAAACTAT
125 ACATATCAATCGTGAAAACCAAGTTCAATCATTTAGACAAGTTTAATATCATGTATTGAAGCTAT
** * ** * * *
16021361 CTAAACCATT-AAA-ATAGAATAATAAATGCAAATTTGCATTTTAG-CTTTTCAACCGCA-CAAA
190 CTAAACTGTTAAAACATA-AAT-ATAAATACAAATTTATATTTTTGCCTTTT-AACAGCATAAAA
* * * * *
16021422 AGATCCTAAATAAACATAAACGGTAACTTTTTTCACACATATCAGCTAT-GCAAACTAAGTTCAA
252 AG-TCCTAAACAGACATAAATGGTAAC-TTTTTCACACATATCA-ATATGGAAAAC-AAGTTCAA
* **
16021486 TAATTTGA
313 TCATTCAA
* * * * * * *
16021494 ACAAGTTTAATATCATATATTGAAGCTATCTAAGCTGTTAAAATAGATTAATAAACATAAATTTT
1 ACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAATATAATAATAAATACAAATTTG
** * * * *
16021559 CATTTTGGCC-TTTAACGGCACAAAAAAGTGGTAAATAGATATAAGCGATAACTTTTTCACACAT
66 CATTTTTACCTTTTAACGGCAC--AAAAGTGCTAAACAGACATAAACGATAACTTTTTCACACAT
* * * * * *
16021623 ATCAATCGTGGAAACCAAGTTTAATTATTTGGACAAGTTTAATATAATGTATTTAAGCTATCTAA
129 ATCAATCGTGAAAACCAAGTTCAATCATTTAGACAAGTTTAATATCATGTATTGAAGCTATCTAA
** * * * * * *
16021688 ACTGTTAAAACATAAATATACCTAAAAAATTAAAATTTTGCC-CTTAACAGCATAACAAAATCCT
194 ACTGTTAAAACATAAATATAAATACAAATTTATATTTTTGCCTTTTAACAGCATAA-AAAGTCCT
* * * ***
16021752 AAA-AGATATAAATGGTAACTTTTTCACACATATCAACTGTGGAAACCAAGTTCAATCATTTGG
258 AAACAGACATAAATGGTAACTTTTTCACACATATCAA-TATGGAAAACAAGTTCAATCATTCAA
* * * * * * * *
16021815 GCAAGTTTAATATCATGTATTGAAGCTATCCAAACTATTGAAACA-AGATAATAACTGCATATTT
1 ACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAATATA-ATAATAAATACAAATTT
* *
16021879 ACATTTTTATCC-TTTAATGGTGCA-AAAAGTGCTAAAC
65 GCATTTTTA-CCTTTTAA-CG-GCACAAAAGTGCTAAAC
16021916 TTAGTTTTTT
Statistics
Matches: 1871, Mismatches: 373, Indels: 179
0.77 0.15 0.07
Matches are distributed among these distances:
300 1 0.00
301 146 0.08
302 2 0.00
303 96 0.05
304 1 0.00
305 5 0.00
307 1 0.00
309 1 0.00
313 1 0.00
317 3 0.00
319 12 0.01
320 211 0.11
321 358 0.19
322 717 0.38
323 275 0.15
324 38 0.02
325 3 0.00
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (320 bp):
ACAAGTTTAATATCATGTATTGAAGCTATCTAAACTGTTAAAATATAATAATAAATACAAATTTG
CATTTTTACCTTTTAACGGCACAAAAGTGCTAAACAGACATAAACGATAACTTTTTCACACATAT
CAATCGTGAAAACCAAGTTCAATCATTTAGACAAGTTTAATATCATGTATTGAAGCTATCTAAAC
TGTTAAAACATAAATATAAATACAAATTTATATTTTTGCCTTTTAACAGCATAAAAAGTCCTAAA
CAGACATAAATGGTAACTTTTTCACACATATCAATATGGAAAACAAGTTCAATCATTCAA
Found at i:16020430 original size:142 final size:142
Alignment explanation
Indices: 16020238--16020496 Score: 392
Period size: 142 Copynumber: 1.8 Consensus size: 142
16020228 AAGTTTAATA
* * * * *
16020238 TCATGTATTGAAGTTATCTAAACTATTAAAATATAATAATAAGTATAAATTTGCATTTTTCCCTT
1 TCATGTATTAAAGCTATCTAAACGATTAAAATATAATAATAAATACAAATTTGCATTTTTCCCTT
* *
16020303 TTAACGGCACAAAAAGTGCTAAATAGAGATAAACGATAACTTTTTCACACATATCAACCATGAAA
66 CTAACGGCACAAAAAGTCCTAAATAGAGATAAACGATAACTTTTTCACACATATCAACCATGAAA
16020368 ACCAAGTTCATG
131 ACCAAGTTCATG
* * * *
16020380 TCATGTATTAAAGCTATCTAAACGGTTAAAATATATTAATAAATACAAATTTGTATTTTTGCCTT
1 TCATGTATTAAAGCTATCTAAACGATTAAAATATAATAATAAATACAAATTTGCATTTTTCCCTT
* * *
16020445 CTAACGGCATAAAAAGTCCTAAATAGATATAAACGATAACTTTTTCGCACAT
66 CTAACGGCACAAAAAGTCCTAAATAGAGATAAACGATAACTTTTTCACACAT
16020497 CTATTGTGGA
Statistics
Matches: 103, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
142 103 1.00
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.34
Consensus pattern (142 bp):
TCATGTATTAAAGCTATCTAAACGATTAAAATATAATAATAAATACAAATTTGCATTTTTCCCTT
CTAACGGCACAAAAAGTCCTAAATAGAGATAAACGATAACTTTTTCACACATATCAACCATGAAA
ACCAAGTTCATG
Found at i:16022063 original size:17 final size:17
Alignment explanation
Indices: 16022020--16022069 Score: 93
Period size: 16 Copynumber: 3.0 Consensus size: 17
16022010 AAATAAATAA
16022020 TTAATAATGAATAAATT
1 TTAATAATGAATAAATT
16022037 TTAA-AATGAATAAATT
1 TTAATAATGAATAAATT
16022053 TTAATAATGAATAAATT
1 TTAATAATGAATAAATT
16022070 CAATTTTCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
16 16 0.50
17 16 0.50
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (17 bp):
TTAATAATGAATAAATT
Found at i:16023382 original size:188 final size:188
Alignment explanation
Indices: 16023052--16023619 Score: 1082
Period size: 188 Copynumber: 3.0 Consensus size: 188
16023042 TTTTTAATAT
* *
16023052 GTAATACCTCAATAAAGTTTAAAGCTTCAAACTTAACTTCTGTTGGAACTTTATGCCATGTTTCA
1 GTAATACC-CAACAAAGTTTAAAGCTTCAAACTTAACTTCTATTGGAACTTTATGCCATGTTTCA
16023117 TAATGAATAGGCAATTTCATGCCATTATAGGCAATCATTCCTAAAAATTTAGCTAGCAATTGACA
65 TAATGAATAGGCAATTTCATGCCATTATAGGCAATCATTCCTAAAAATTTAGCTAGCAATTGACA
16023182 CTCTTCACCAATTGGTTTTCTATCAAAGTTTGCATACACTACAATACACTCATTTGAAG
130 CTCTTCACCAATTGGTTTTCTATCAAAGTTTGCATACACTACAATACACTCATTTGAAG
16023241 GTAATACCCAACAAAGTTTAAAGCTTCAAACTTAACTTCTATTGGAACTTTATGCCATGTTTCAT
1 GTAATACCCAACAAAGTTTAAAGCTTCAAACTTAACTTCTATTGGAACTTTATGCCATGTTTCAT
16023306 AATGAATAGGCAATTTCATGCCATTATAGGCAATCATTCCTAAAAATTTAGCTAGCAATTGACAC
66 AATGAATAGGCAATTTCATGCCATTATAGGCAATCATTCCTAAAAATTTAGCTAGCAATTGACAC
16023371 TCTTCACCAATTGGTTTTCTATCAAAGTTTGCATACACTACAATACACTCATTTGAAG
131 TCTTCACCAATTGGTTTTCTATCAAAGTTTGCATACACTACAATACACTCATTTGAAG
*
16023429 GTAATACCCAACAAAGTTTAAAGCTTCAAACTTCACTTCTATTGGAACTTTATGCCATGTTTCAT
1 GTAATACCCAACAAAGTTTAAAGCTTCAAACTTAACTTCTATTGGAACTTTATGCCATGTTTCAT
*
16023494 AATGAATAGGCAATTTCATGCCATTATGGGCAATCATTCCTAAAAATTTAGCTAGCAATTGACAC
66 AATGAATAGGCAATTTCATGCCATTATAGGCAATCATTCCTAAAAATTTAGCTAGCAATTGACAC
*
16023559 TCTTCACCAATTGGTTTTCTATCAAAGTTTGCATACACTACAATACACTTATTTGAAG
131 TCTTCACCAATTGGTTTTCTATCAAAGTTTGCATACACTACAATACACTCATTTGAAG
16023617 GTA
1 GTA
16023620 GTGTCTACAA
Statistics
Matches: 374, Mismatches: 5, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
188 366 0.98
189 8 0.02
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.34
Consensus pattern (188 bp):
GTAATACCCAACAAAGTTTAAAGCTTCAAACTTAACTTCTATTGGAACTTTATGCCATGTTTCAT
AATGAATAGGCAATTTCATGCCATTATAGGCAATCATTCCTAAAAATTTAGCTAGCAATTGACAC
TCTTCACCAATTGGTTTTCTATCAAAGTTTGCATACACTACAATACACTCATTTGAAG
Found at i:16024083 original size:13 final size:13
Alignment explanation
Indices: 16024062--16024094 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
16024052 ATAACCAACT
16024062 ATATATAAAGAAC
1 ATATATAAAGAAC
*
16024075 ATATCTAAAGAAC
1 ATATATAAAGAAC
16024088 ATATATA
1 ATATATA
16024095 GACATTAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.58, C:0.09, G:0.06, T:0.27
Consensus pattern (13 bp):
ATATATAAAGAAC
Found at i:16030621 original size:21 final size:21
Alignment explanation
Indices: 16030597--16030637 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
16030587 AGAATCAATA
16030597 AAACTA-CCATAAAAAAGCATG
1 AAACTATCC-TAAAAAAGCATG
*
16030618 AAACTATCCTAAAAATGCAT
1 AAACTATCCTAAAAAAGCAT
16030638 AGGAGTAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.54, C:0.20, G:0.07, T:0.20
Consensus pattern (21 bp):
AAACTATCCTAAAAAAGCATG
Found at i:16031395 original size:16 final size:15
Alignment explanation
Indices: 16031361--16031398 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
16031351 GGAAGTTTTC
*
16031361 ACAAAAAATTAACTT
1 ACAAAAAATTAAATT
16031376 -CAAAAAAGTTAAATT
1 ACAAAAAA-TTAAATT
16031391 ACAAAAAA
1 ACAAAAAA
16031399 ACTCATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 7 0.35
15 6 0.30
16 7 0.35
ACGTcount: A:0.66, C:0.11, G:0.03, T:0.21
Consensus pattern (15 bp):
ACAAAAAATTAAATT
Found at i:16031911 original size:5 final size:5
Alignment explanation
Indices: 16031892--16031936 Score: 56
Period size: 5 Copynumber: 8.8 Consensus size: 5
16031882 ATAGAATTAC
*
16031892 AAATAA AAATAA AAATA AAATA AAATA AAACA AAATA AAA-A AAAT
1 AAAT-A AAAT-A AAATA AAATA AAATA AAATA AAATA AAATA AAAT
16031937 GATCATATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
4 4 0.11
5 22 0.61
6 10 0.28
ACGTcount: A:0.82, C:0.02, G:0.00, T:0.16
Consensus pattern (5 bp):
AAATA
Found at i:16032265 original size:6 final size:6
Alignment explanation
Indices: 16032254--16032285 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
16032244 ATTCCTTCTC
16032254 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AA
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AA
16032286 AGATTTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAGAAA
Found at i:16034030 original size:2 final size:2
Alignment explanation
Indices: 16034023--16034054 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
16034013 GATAACATCA
16034023 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
16034055 TAGTTTTTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:16034728 original size:22 final size:22
Alignment explanation
Indices: 16034698--16034870 Score: 147
Period size: 22 Copynumber: 7.9 Consensus size: 22
16034688 ATTATTGACA
* *
16034698 ATTAAATTATTATTGATTCATT
1 ATTAAATTATCATTGATTTATT
* * *
16034720 ATTATATTATCAGTAATTTATT
1 ATTAAATTATCATTGATTTATT
*
16034742 ATTAAATTATCAATT-ATTTACT
1 ATTAAATTATC-ATTGATTTATT
* *
16034764 ATTAAATTATGAATGATTTATT
1 ATTAAATTATCATTGATTTATT
16034786 ATTAAATTATCATTGATTTATT
1 ATTAAATTATCATTGATTTATT
* * * * *
16034808 ACTAATTTATAAATGATTTACT
1 ATTAAATTATCATTGATTTATT
* *
16034830 ATTAAGTTA-CTAATGATTTATT
1 ATTAAATTATC-ATTGATTTATT
*
16034852 A-TAAAGTTATAATT-ATTTA
1 ATTAAA-TTATCATTGATTTA
16034871 CTCCTAATTT
Statistics
Matches: 121, Mismatches: 25, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
21 10 0.08
22 109 0.90
23 2 0.02
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.51
Consensus pattern (22 bp):
ATTAAATTATCATTGATTTATT
Found at i:16034781 original size:66 final size:65
Alignment explanation
Indices: 16034684--16034917 Score: 222
Period size: 66 Copynumber: 3.6 Consensus size: 65
16034674 AAAAGAAAAA
* * * * * *
16034684 ATCAATTATTGACAATTAAATTATTATTGATTCATTATTATATTATCAGTAATTTATTATTAAAT
1 ATCAATTATTTACTATTAAATTA-TAATGATTTATTATTAAATTATCAGTAATTTATTACTAAAT
16034749 T
65 T
* * *
16034750 ATCAATTATTTACTATTAAATTATGAATGATTTATTATTAAATTATCATTGATTTATTACTAATT
1 ATCAATTATTTACTATTAAATTAT-AATGATTTATTATTAAATTATCAGTAATTTATTACTAAAT
16034815 T
65 T
* * * * * * * *
16034816 ATAAATGATTTACTATTAAGTTACTAATGATTTATTA-TAAAGTTAT-AATTATTTACTCCTAAT
1 ATCAATTATTTACTATTAAATTA-TAATGATTTATTATTAAA-TTATCAGTAATTTATTACTAAA
16034879 TT
64 TT
* *
16034881 ATCAATTATTTACT-TCAAAGTTATCAATGATTAATTA
1 ATCAATTATTTACTATTAAA-TTAT-AATGATTTATTA
16034918 ATTTACTACT
Statistics
Matches: 142, Mismatches: 21, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
64 4 0.03
65 46 0.32
66 91 0.64
67 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.05, T:0.49
Consensus pattern (65 bp):
ATCAATTATTTACTATTAAATTATAATGATTTATTATTAAATTATCAGTAATTTATTACTAAATT
Found at i:16034890 original size:22 final size:22
Alignment explanation
Indices: 16034854--16034908 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
16034844 GATTTATTAT
16034854 AAAGTTAT-AATTATTTACTCC
1 AAAGTTATCAATTATTTACTCC
* * *
16034875 TAATTTATCAATTATTTACTTC
1 AAAGTTATCAATTATTTACTCC
16034897 AAAGTTATCAAT
1 AAAGTTATCAAT
16034909 GATTAATTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 6 0.21
22 22 0.79
ACGTcount: A:0.38, C:0.13, G:0.04, T:0.45
Consensus pattern (22 bp):
AAAGTTATCAATTATTTACTCC
Found at i:16034922 original size:30 final size:30
Alignment explanation
Indices: 16034884--16034949 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
16034874 CTAATTTATC
*
16034884 AATT-ATTTACTTC-AAAGTTATCAATGATT
1 AATTAATTTACTACTAAA-TTATCAATGATT
*
16034913 AATTAATTTACTACTAAATTATCAATTATT
1 AATTAATTTACTACTAAATTATCAATGATT
*
16034943 TATTAAT
1 AATTAAT
16034950 ATATTATGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 4 0.12
30 25 0.78
31 3 0.09
ACGTcount: A:0.41, C:0.09, G:0.03, T:0.47
Consensus pattern (30 bp):
AATTAATTTACTACTAAATTATCAATGATT
Found at i:16034944 original size:22 final size:22
Alignment explanation
Indices: 16034913--16034989 Score: 75
Period size: 22 Copynumber: 3.5 Consensus size: 22
16034903 ATCAATGATT
*
16034913 AATTAATTTACTACTAAATTATC
1 AATT-ATTTACTACTATATTATC
* *
16034936 AATTATTTATTAATATATTAT-
1 AATTATTTACTACTATATTATC
* *
16034957 GATATATTTACTACTATGTTATC
1 AAT-TATTTACTACTATATTATC
*
16034980 ATTTATTTAC
1 AATTATTTAC
16034990 CATATAACTT
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
21 2 0.05
22 36 0.84
23 5 0.12
ACGTcount: A:0.38, C:0.09, G:0.03, T:0.51
Consensus pattern (22 bp):
AATTATTTACTACTATATTATC
Found at i:16035155 original size:44 final size:44
Alignment explanation
Indices: 16035091--16035317 Score: 157
Period size: 44 Copynumber: 5.2 Consensus size: 44
16035081 CATTACCAAT
* * *
16035091 TTATTATTGATTTA-TATTAAATTATTCATGATTTACTATTAAG
1 TTATCATTAATTTACTATTAAATTATTAATGATTTACTATTAAG
* **
16035134 TTATCATTAATTAACTATTAAATTATTAATGATTTACTACCAAG
1 TTATCATTAATTTACTATTAAATTATTAATGATTTACTATTAAG
* * *
16035178 TTAT-ATTGATTTACTTTTAAGTT-TTCAATGA-TTA--ATTACAG
1 TTATCATTAATTTACTATTAAATTATT-AATGATTTACTATTA-AG
* ** * * *
16035219 AATTATTATTAATTTACTACCAAGTTATTTATAATTTACT-TCTAAG
1 --TTATCATTAATTTACTATTAAATTATTAATGATTTACTAT-TAAG
* * *
16035265 TTTATCAATTAA-TTACTATTAAACTA-AAATTGATTTACTATTAAA
1 -TTATC-ATTAATTTACTATTAAATTATTAA-TGATTTACTATTAAG
16035310 TTATCATT
1 TTATCATT
16035318 GGTTTATTAC
Statistics
Matches: 142, Mismatches: 28, Indels: 28
0.72 0.14 0.14
Matches are distributed among these distances:
40 2 0.01
41 2 0.01
42 5 0.04
43 38 0.27
44 54 0.38
45 30 0.21
46 9 0.06
47 2 0.01
ACGTcount: A:0.37, C:0.09, G:0.05, T:0.48
Consensus pattern (44 bp):
TTATCATTAATTTACTATTAAATTATTAATGATTTACTATTAAG
Found at i:16035160 original size:65 final size:64
Alignment explanation
Indices: 16035091--16035313 Score: 184
Period size: 65 Copynumber: 3.4 Consensus size: 64
16035081 CATTACCAAT
**
16035091 TTATTATTGATTTA-TATTAAATTATTCATGATTTACTATTAAGTTATCATTAATTAACTATTAA
1 TTATTATTGATTTACTACCAAATTATT-ATGATTTACT-TTAAGTTATCATTAATTAACTATTAA
16035155 A
64 A
* * * * * * *
16035156 TTATTAATGATTTACTACCAAGTTA-TATTGATTTACTTTTAAGTTTTCAATGATTAATTA-CAG
1 TTATTATTGATTTACTACCAAATTATTA-TGATTTAC-TTTAAGTTATCATTAATTAACTATTA-
16035219 AA
63 AA
* * *
16035221 TTATTATTAATTTACTACCAAGTTATTTATAATTTACTTCTAAGTTTATCAATTAATT-ACTATT
1 TTATTATTGATTTACTACCAAATTA-TTATGATTTACTT-TAAG-TTATC-ATTAATTAACTATT
16035285 AAA
62 AAA
* ** **
16035288 CTAAAATTGATTTACTATTAAATTAT
1 TTATTATTGATTTACTACCAAATTAT
16035314 CATTGGTTTA
Statistics
Matches: 124, Mismatches: 24, Indels: 19
0.74 0.14 0.11
Matches are distributed among these distances:
64 2 0.02
65 67 0.54
66 20 0.16
67 29 0.23
68 6 0.05
ACGTcount: A:0.38, C:0.09, G:0.05, T:0.48
Consensus pattern (64 bp):
TTATTATTGATTTACTACCAAATTATTATGATTTACTTTAAGTTATCATTAATTAACTATTAAA
Found at i:16035318 original size:22 final size:22
Alignment explanation
Indices: 16035035--16035323 Score: 110
Period size: 22 Copynumber: 13.2 Consensus size: 22
16035025 CAATTCAGTT
* *
16035035 ATTTACTATAAAATTATCATAG
1 ATTTACTATTAAATTATCATTG
* *
16035057 ATTTA-TATCAAATTATCCA-TA
1 ATTTACTATTAAATTAT-CATTG
* * ** * *
16035078 ATTCATTACCAATTTATTATTG
1 ATTTACTATTAAATTATCATTG
16035100 ATTTA-TATTAAATTATTCA-TG
1 ATTTACTATTAAATTA-TCATTG
* *
16035121 ATTTACTATTAAGTTATCATTA
1 ATTTACTATTAAATTATCATTG
* * *
16035143 ATTAACTATTAAATTATTAATG
1 ATTTACTATTAAATTATCATTG
** *
16035165 ATTTACTACCAAGTTAT-ATTG
1 ATTTACTATTAAATTATCATTG
* * * *
16035186 ATTTACTTTTAAGTTTTCAATG
1 ATTTACTATTAAATTATCATTG
* * * * *
16035208 ATTAATTA-CAGAATTATTATTA
1 ATTTACTATTA-AATTATCATTG
** * * *
16035230 ATTTACTACCAAGTTAT-TTATA
1 ATTTACTATTAAATTATCAT-TG
*
16035252 ATTTACT-TCTAAGTTTATCAATT-
1 ATTTACTAT-TAA-ATTATC-ATTG
* * **
16035275 AATTACTATTAAACTAAAATTG
1 ATTTACTATTAAATTATCATTG
16035297 ATTTACTATTAAATTATCATTG
1 ATTTACTATTAAATTATCATTG
*
16035319 GTTTA
1 ATTTA
16035324 TTACCAAGTT
Statistics
Matches: 194, Mismatches: 57, Indels: 32
0.69 0.20 0.11
Matches are distributed among these distances:
21 53 0.27
22 123 0.63
23 15 0.08
24 2 0.01
25 1 0.01
ACGTcount: A:0.38, C:0.10, G:0.05, T:0.47
Consensus pattern (22 bp):
ATTTACTATTAAATTATCATTG
Found at i:16035702 original size:22 final size:22
Alignment explanation
Indices: 16035676--16035859 Score: 133
Period size: 22 Copynumber: 8.4 Consensus size: 22
16035666 GTTGTTAGTA
*
16035676 ATTTACTACTAAGTTATCAATG
1 ATTTACTACTAAGTTATTAATG
* * * * *
16035698 GTTTATTAATAAATTATTTATG
1 ATTTACTACTAAGTTATTAATG
* * *
16035720 ATTTATTACTAATTTATGAATG
1 ATTTACTACTAAGTTATTAATG
* *
16035742 ATTTACTATTCAA-TTATTAATA
1 ATTTACTACT-AAGTTATTAATG
*
16035764 ATTTACTACTAAGTTATTGATG
1 ATTTACTACTAAGTTATTAATG
* *
16035786 ATTTATTA-TGAATTTA-TAATTG
1 ATTTACTACT-AAGTTATTAA-TG
* *
16035808 ATTTACTACTAATTTATTAATA
1 ATTTACTACTAAGTTATTAATG
* *
16035830 ATTTATTA-TAAAGTTATTATTG
1 ATTTACTACT-AAGTTATTAATG
*
16035852 ATTAACTA
1 ATTTACTA
16035860 ATTTACTATT
Statistics
Matches: 126, Mismatches: 29, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
21 6 0.05
22 114 0.90
23 6 0.05
ACGTcount: A:0.38, C:0.06, G:0.07, T:0.49
Consensus pattern (22 bp):
ATTTACTACTAAGTTATTAATG
Found at i:16035724 original size:44 final size:43
Alignment explanation
Indices: 16035676--16035859 Score: 181
Period size: 44 Copynumber: 4.2 Consensus size: 43
16035666 GTTGTTAGTA
* * *
16035676 ATTTACTACTAAGTTATCAATGGTTTATTAATAAATTATTTATG
1 ATTTACTACTAAGTTATTAATGATTTATT-ATAAATTATTAATG
* * * * * *
16035720 ATTTATTACTAATTTATGAATGATTTACTATTCAATTATTAATA
1 ATTTACTACTAAGTTATTAATGATTTATTA-TAAATTATTAATG
* *
16035764 ATTTACTACTAAGTTATTGATGATTTATTATGAATT-TATAATTG
1 ATTTACTACTAAGTTATTAATGATTTATTATAAATTAT-TAA-TG
* * *
16035808 ATTTACTACTAATTTATTAATAATTTATTATAAAGTTATTATTG
1 ATTTACTACTAAGTTATTAATGATTTATTATAAA-TTATTAATG
*
16035852 ATTAACTA
1 ATTTACTA
16035860 ATTTACTATT
Statistics
Matches: 114, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
42 1 0.01
43 9 0.08
44 99 0.87
45 4 0.04
46 1 0.01
ACGTcount: A:0.38, C:0.06, G:0.07, T:0.49
Consensus pattern (43 bp):
ATTTACTACTAAGTTATTAATGATTTATTATAAATTATTAATG
Found at i:16035734 original size:11 final size:11
Alignment explanation
Indices: 16035699--16035837 Score: 86
Period size: 11 Copynumber: 12.6 Consensus size: 11
16035689 TTATCAATGG
16035699 TTTATTAATAA
1 TTTATTAATAA
* * *
16035710 ATTATTTATGA
1 TTTATTAATAA
*
16035721 TTTATTACTAA
1 TTTATTAATAA
* *
16035732 TTTATGAATGA
1 TTTATTAATAA
* *
16035743 TTTACTATTCAA
1 TTTATTAAT-AA
16035755 -TTATTAATAA
1 TTTATTAATAA
* *
16035765 TTTACTACTAA
1 TTTATTAATAA
* * *
16035776 GTTATTGATGA
1 TTTATTAATAA
16035787 TTTATT-ATGAA
1 TTTATTAAT-AA
*
16035798 TTTA-TAATTGA
1 TTTATTAA-TAA
* *
16035809 TTTACTACTAA
1 TTTATTAATAA
16035820 TTTATTAATAA
1 TTTATTAATAA
16035831 TTTATTA
1 TTTATTA
16035838 TAAAGTTATT
Statistics
Matches: 92, Mismatches: 30, Indels: 12
0.69 0.22 0.09
Matches are distributed among these distances:
10 5 0.05
11 83 0.90
12 4 0.04
ACGTcount: A:0.37, C:0.05, G:0.06, T:0.52
Consensus pattern (11 bp):
TTTATTAATAA
Found at i:16035746 original size:66 final size:65
Alignment explanation
Indices: 16035676--16035847 Score: 197
Period size: 66 Copynumber: 2.6 Consensus size: 65
16035666 GTTGTTAGTA
* ** *
16035676 ATTTACTACTAAGTTATCAATGGTTTATTAATAAATTATTTATGATTTATTACT-AATTTATGAA
1 ATTTACTACTAA-TTATTAATAATTTATTAATAAATTATTGATGATTTATTA-TGAATTTAT-AA
16035740 -TG
63 TTG
* * * *
16035742 ATTTACTATTCAATTATTAATAATTTACTACTAAGTTATTGATGATTTATTATGAATTTATAATT
1 ATTTACTACT-AATTATTAATAATTTATTAATAAATTATTGATGATTTATTATGAATTTATAATT
16035807 G
65 G
16035808 ATTTACTACTAATTTATTAATAATTTATT-ATAAAGTTATT
1 ATTTACTACTAA-TTATTAATAATTTATTAATAAA-TTATT
16035848 ATTGATTAAC
Statistics
Matches: 89, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
65 8 0.09
66 79 0.89
67 2 0.02
ACGTcount: A:0.37, C:0.06, G:0.07, T:0.50
Consensus pattern (65 bp):
ATTTACTACTAATTATTAATAATTTATTAATAAATTATTGATGATTTATTATGAATTTATAATTG
Found at i:16035847 original size:88 final size:88
Alignment explanation
Indices: 16035645--16035848 Score: 225
Period size: 88 Copynumber: 2.3 Consensus size: 88
16035635 TGGCGATTAA
* * * * *
16035645 TTATCAATAATTTACTATTACGTTGTTAGTAATTTACTACTAAGTTATCAATGGTTTATTAATAA
1 TTATCAATAATTTACTATAAAGTTATTAATAATTTACTACTAAGTTATCAATGATTTATTAATAA
* *
16035710 ATTATTTATGATTTATTACTAAT
66 ATTATATATGATTTACTACTAAT
* * * ** *
16035733 TTATGAATGATTTACTATTCAA-TTATTAATAATTTACTACTAAGTTATTGATGATTTATT-ATG
1 TTATCAATAATTTACTA-TAAAGTTATTAATAATTTACTACTAAGTTATCAATGATTTATTAATA
16035796 AATT-TATAATTGATTTACTACTAAT
65 AATTATAT-A-TGATTTACTACTAAT
* *
16035821 TTATTAATAATTTATTATAAAGTTATTA
1 TTATCAATAATTTACTATAAAGTTATTA
16035849 TTGATTAACT
Statistics
Matches: 96, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
86 2 0.02
87 10 0.10
88 82 0.85
89 2 0.02
ACGTcount: A:0.37, C:0.06, G:0.07, T:0.50
Consensus pattern (88 bp):
TTATCAATAATTTACTATAAAGTTATTAATAATTTACTACTAAGTTATCAATGATTTATTAATAA
ATTATATATGATTTACTACTAAT
Found at i:16035864 original size:30 final size:29
Alignment explanation
Indices: 16035823--16035884 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 29
16035813 CTACTAATTT
* *
16035823 ATTAATAATTTATTA-TAAAGTTATTATTG
1 ATTAATAATTTACTATTAAA-TTATCATTG
16035852 ATTAACTAATTTACTATTAAATTATCATTG
1 ATTAA-TAATTTACTATTAAATTATCATTG
16035882 ATT
1 ATT
16035885 TACAACTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 5 0.17
30 20 0.69
31 4 0.14
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.50
Consensus pattern (29 bp):
ATTAATAATTTACTATTAAATTATCATTG
Found at i:16035885 original size:22 final size:22
Alignment explanation
Indices: 16035860--16036206 Score: 80
Period size: 22 Copynumber: 16.2 Consensus size: 22
16035850 TGATTAACTA
16035860 ATTTACTATTAAATTATCATTG
1 ATTTACTATTAAATTATCATTG
* * * * * *
16035882 ATTTACAACTAAGTTATTAGTA
1 ATTTACTATTAAATTATCATTG
* ** *
16035904 ATTTACTAATACGTTAT-TTATG
1 ATTTACTATTAAATTATCAT-TG
* * *
16035926 ATTTAGTATT-AAGT-T-ATTA
1 ATTTACTATTAAATTATCATTG
* *
16035945 ATTTACTACTAAATTATCAATG
1 ATTTACTATTAAATTATCATTG
** *
16035967 ATTTA-TGATTTTATTATTATAT-
1 ATTTACT-ATTAAATTATCAT-TG
* ** * *
16035989 ATTTACTACTATGTTATTATTA
1 ATTTACTATTAAATTATCATTG
* * *
16036011 ATTTACTATTTAATTTTGATT-
1 ATTTACTATTAAATTATCATTG
* * *
16036032 ATTTACTATGAAATTATTATCG
1 ATTTACTATTAAATTATCATTG
* * * *
16036054 ATTTACCACTAAAATTTTCA-TA
1 ATTTACTA-TTAAATTATCATTG
* *
16036076 ATTTACTATTAAGTTATCACT-
1 ATTTACTATTAAATTATCATTG
* *
16036097 AATTA--ATT--ATTCTCTATTG
1 ATTTACTATTAAATTATC-ATTG
* * *
16036116 ATTTACTTTTAAATT-TTAATG
1 ATTTACTATTAAATTATCATTG
* *
16036137 ATTAACTACTAAATTATCAATT-
1 ATTTACTATTAAATTATC-ATTG
* * *
16036159 ATTTACTACTAAGTTTTCATT-
1 ATTTACTATTAAATTATCATTG
* * *
16036180 AATTACCACTAAATTAT-ATATG
1 ATTTACTATTAAATTATCAT-TG
16036202 ATTTA
1 ATTTA
16036207 TTACTATAAA
Statistics
Matches: 230, Mismatches: 74, Indels: 42
0.66 0.21 0.12
Matches are distributed among these distances:
17 4 0.02
18 2 0.01
19 16 0.07
20 7 0.03
21 66 0.29
22 120 0.52
23 15 0.07
ACGTcount: A:0.36, C:0.10, G:0.05, T:0.49
Consensus pattern (22 bp):
ATTTACTATTAAATTATCATTG
Found at i:16035968 original size:41 final size:43
Alignment explanation
Indices: 16035858--16035971 Score: 115
Period size: 44 Copynumber: 2.7 Consensus size: 43
16035848 ATTGATTAAC
* *
16035858 TAATTTACTATTAAATTATCATTGATTTACAACTAAGTTATTA
1 TAATTTACTAATAAATTATCAATGATTTACAACTAAGTTATTA
** ** ** *
16035901 GTAATTTACTAATACGTTATTTATGATTTAGTATTAAGTTA-T-
1 -TAATTTACTAATAAATTATCAATGATTTACAACTAAGTTATTA
*
16035943 TAATTTACTACTAAATTATCAATGATTTA
1 TAATTTACTAATAAATTATCAATGATTTA
16035972 TGATTTTATT
Statistics
Matches: 56, Mismatches: 14, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
41 24 0.43
43 1 0.02
44 31 0.55
ACGTcount: A:0.38, C:0.08, G:0.07, T:0.47
Consensus pattern (43 bp):
TAATTTACTAATAAATTATCAATGATTTACAACTAAGTTATTA
Found at i:16036185 original size:21 final size:22
Alignment explanation
Indices: 16036141--16036196 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 22
16036131 TTAATGATTA
*
16036141 ACTACTAAATTATCAATTATTT
1 ACTACTAAATTATCAATTAATT
* *
16036163 ACTACTAAGTTTTC-ATTAATT
1 ACTACTAAATTATCAATTAATT
*
16036184 ACCACTAAATTAT
1 ACTACTAAATTAT
16036197 ATATGATTTA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 16 0.57
22 12 0.43
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.43
Consensus pattern (22 bp):
ACTACTAAATTATCAATTAATT
Found at i:16036478 original size:22 final size:22
Alignment explanation
Indices: 16036246--16036549 Score: 95
Period size: 22 Copynumber: 13.9 Consensus size: 22
16036236 AACTGATTTG
* *
16036246 TTAA-TTACTATTAAGTTATTA
1 TTAATTTACTATTAAATTATCA
* * *
16036267 TTAATTTATTACTAAATTATTA
1 TTAATTTACTATTAAATTATCA
* * * * *
16036289 CTGATTAACTACT-AATTATTAA
1 TTAATTTACTATTAAATTA-TCA
* ** * * *
16036311 TTATTTTTGTAATAAGTTATCC
1 TTAATTTACTATTAAATTATCA
* * *
16036333 TTAATTTACTATTACATTGTTA
1 TTAATTTACTATTAAATTATCA
* * * *
16036355 TGT-ATTTACAACTATATTATAA
1 T-TAATTTACTATTAAATTATCA
* * * * *
16036377 TTGATTGACTACTAAATTCTTA
1 TTAATTTACTATTAAATTATCA
* * *
16036399 TGCAA-TTACTA-TATATTATTA
1 T-TAATTTACTATTAAATTATCA
* * *
16036420 TTGATTTACTATCAAGTTATCA
1 TTAATTTACTATTAAATTATCA
16036442 --AATATTAACTATTAAATTATCA
1 TTAAT-TT-ACTATTAAATTATCA
* *
16036464 TTAATTTACTTTTAAGTTATCA
1 TTAATTTACTATTAAATTATCA
* * *
16036486 CTAGTTTACTACTAAATTAT--
1 TTAATTTACTATTAAATTATCA
* *
16036506 TTATGATTTACTATTAAGTTATTA
1 TTA--ATTTACTATTAAATTATCA
* *
16036530 TTAATTAATTATTAAATTAT
1 TTAATTTACTATTAAATTAT
16036550 TGATGATTAC
Statistics
Matches: 202, Mismatches: 65, Indels: 31
0.68 0.22 0.10
Matches are distributed among these distances:
20 5 0.02
21 27 0.13
22 156 0.77
23 8 0.04
24 6 0.03
ACGTcount: A:0.37, C:0.09, G:0.05, T:0.49
Consensus pattern (22 bp):
TTAATTTACTATTAAATTATCA
Found at i:16036550 original size:44 final size:44
Alignment explanation
Indices: 16036413--16036578 Score: 155
Period size: 44 Copynumber: 3.8 Consensus size: 44
16036403 ATTACTATAT
* *
16036413 ATTA-TTATTGATTTACTATCAAGTTATCA-AATATTAACTATTAA
1 ATTATTTA-TGATTTACTATTAAGTTATCACTA-ATTAACTATTAA
* * * *
16036457 ATTATCATTA--ATTTACTTTTAAGTTATCACTAGTTTACTACTAA
1 ATTAT--TTATGATTTACTATTAAGTTATCACTAATTAACTATTAA
* * *
16036501 ATTATTTATGATTTACTATTAAGTTATTATTAATTAATTATTAA
1 ATTATTTATGATTTACTATTAAGTTATCACTAATTAACTATTAA
* *
16036545 ATTATTGATGA-TTACTACTAAGTTAT-ACTAATTA
1 ATTATTTATGATTTACTATTAAGTTATCACTAATTA
16036579 TTTTTAAGTT
Statistics
Matches: 100, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
42 10 0.10
43 14 0.14
44 72 0.72
45 1 0.01
47 3 0.03
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.48
Consensus pattern (44 bp):
ATTATTTATGATTTACTATTAAGTTATCACTAATTAACTATTAA
Found at i:16036558 original size:22 final size:21
Alignment explanation
Indices: 16036493--16036558 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
16036483 TCACTAGTTT
* *
16036493 ACTACTAAATTATTTATGATTT
1 ACTATTAAATTA-TTATGATTA
* *
16036515 ACTATTAAGTTATTATTAATTA
1 ACTATTAAATTATTA-TGATTA
*
16036537 ATTATTAAATTATTGATGATTA
1 ACTATTAAATTATT-ATGATTA
16036559 CTACTAAGTT
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
21 3 0.09
22 31 0.89
23 1 0.03
ACGTcount: A:0.39, C:0.05, G:0.06, T:0.50
Consensus pattern (21 bp):
ACTATTAAATTATTATGATTA
Found at i:16037566 original size:34 final size:35
Alignment explanation
Indices: 16037499--16037566 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 35
16037489 GAATAAAATA
* * *
16037499 AAATAAAAATAATAATAATAATATTACAAAATACG
1 AAATAAAAATAATAACAAAAATAATACAAAATACG
*
16037534 AAATAAAAA-AATACCAAAAATAATACAAAATAC
1 AAATAAAAATAATAACAAAAATAATACAAAATAC
16037567 AAAAACAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 20 0.69
35 9 0.31
ACGTcount: A:0.69, C:0.09, G:0.01, T:0.21
Consensus pattern (35 bp):
AAATAAAAATAATAACAAAAATAATACAAAATACG
Found at i:16037587 original size:34 final size:34
Alignment explanation
Indices: 16037518--16037589 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 34
16037508 TAATAATAAT
* * *
16037518 AATATTACAAAATACGAAATAAAAAAATACCAAA
1 AATAATACAAAATACGAAAAAAAAAAAAACCAAA
**
16037552 AATAATACAAAATAC-AAAAACAAAAAAAATGAAA
1 AATAATACAAAATACGAAAAA-AAAAAAAACCAAA
16037586 AATA
1 AATA
16037590 CCCAAAAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
33 4 0.12
34 28 0.88
ACGTcount: A:0.72, C:0.10, G:0.03, T:0.15
Consensus pattern (34 bp):
AATAATACAAAATACGAAAAAAAAAAAAACCAAA
Found at i:16038676 original size:22 final size:24
Alignment explanation
Indices: 16038644--16038692 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
16038634 TAAGTTTTTT
*
16038644 TTATGCATAAATGTTTAAAT-TTA
1 TTATGCATAAATATTTAAATGTTA
*
16038667 TTATG-ATAAATATTTAATTGTTA
1 TTATGCATAAATATTTAAATGTTA
16038690 TTA
1 TTA
16038693 ATAATAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.39, C:0.02, G:0.08, T:0.51
Consensus pattern (24 bp):
TTATGCATAAATATTTAAATGTTA
Found at i:16040131 original size:23 final size:22
Alignment explanation
Indices: 16040089--16040137 Score: 53
Period size: 24 Copynumber: 2.0 Consensus size: 22
16040079 ACTCTACTTG
*
16040089 AAATTATGAAAAATAAAAATTTA
1 AAATTATGAAAAAT-AAAATATA
16040112 AAATTATTGAAAAACTAAATATATA
1 AAATTA-TGAAAAA-TAAA-ATATA
16040137 A
1 A
16040138 TTAAAGAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
23 6 0.27
24 10 0.45
25 6 0.27
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (22 bp):
AAATTATGAAAAATAAAATATA
Found at i:16040409 original size:30 final size:30
Alignment explanation
Indices: 16040372--16040457 Score: 84
Period size: 30 Copynumber: 2.9 Consensus size: 30
16040362 ATTTAGCAAC
16040372 AAATTAAAGATTAAAGGTCTATTTGGATAT
1 AAATTAAAGATTAAAGGTCTATTTGGATAT
* * * * * ** *
16040402 TAATTAAAAAATAAGGGTTTATTTAAATGT
1 AAATTAAAGATTAAAGGTCTATTTGGATAT
16040432 AAATTAAAGATTAAAGG-CTTATTTGG
1 AAATTAAAGATTAAAGGTC-TATTTGG
16040458 GTAAAATAAA
Statistics
Matches: 40, Mismatches: 15, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.44, C:0.02, G:0.16, T:0.37
Consensus pattern (30 bp):
AAATTAAAGATTAAAGGTCTATTTGGATAT
Found at i:16041296 original size:25 final size:25
Alignment explanation
Indices: 16041226--16041296 Score: 90
Period size: 26 Copynumber: 2.8 Consensus size: 25
16041216 TTAATATAAC
16041226 TATTAAAA-TATTAAAAATTATTTAT
1 TATTAAAATTATT-AAAATTATTTAT
* *
16041251 TATTAAAGTATATTGAAATTATTTAT
1 TATTAAAAT-TATTAAAATTATTTAT
*
16041277 TATTAAAATTATTAATATTA
1 TATTAAAATTATTAAAATTA
16041297 AAAATAATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
25 16 0.41
26 19 0.49
27 4 0.10
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (25 bp):
TATTAAAATTATTAAAATTATTTAT
Found at i:16041297 original size:15 final size:16
Alignment explanation
Indices: 16041260--16041332 Score: 62
Period size: 16 Copynumber: 4.6 Consensus size: 16
16041250 TTATTAAAGT
*
16041260 ATATTGAAATTATTTA
1 ATATTAAAATTATTTA
*
16041276 TTATTAAAATTA-TTA
1 ATATTAAAATTATTTA
* *
16041291 ATATTAAAAATAATT-
1 ATATTAAAATTATTTA
*
16041306 ATATTTGATAA-TATTTA
1 ATA-TT-AAAATTATTTA
16041323 ATATTAAAAT
1 ATATTAAAAT
16041333 ATCACGTTAT
Statistics
Matches: 45, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
15 19 0.42
16 20 0.44
17 6 0.13
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (16 bp):
ATATTAAAATTATTTA
Found at i:16041301 original size:16 final size:15
Alignment explanation
Indices: 16041260--16041299 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
16041250 TTATTAAAGT
*
16041260 ATATTGAAATTATTTA
1 ATATTAAAATTA-TTA
*
16041276 TTATTAAAATTATTA
1 ATATTAAAATTATTA
16041291 ATATTAAAA
1 ATATTAAAA
16041300 ATAATTATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 11 0.52
16 10 0.48
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (15 bp):
ATATTAAAATTATTA
Found at i:16041334 original size:25 final size:26
Alignment explanation
Indices: 16041226--16041334 Score: 63
Period size: 26 Copynumber: 4.4 Consensus size: 26
16041216 TTAATATAAC
* * *
16041226 TATTAAAATA-TTAAAAATTATTTAT
1 TATTAAAATATTTGATAATTATTTAA
* *
16041251 TATTAAAGTATATTGA-AATTATTTAT
1 TATTAAAATAT-TTGATAATTATTTAA
*
16041277 TATTAAAAT-TAT--TAA-TA-TTAA
1 TATTAAAATATTTGATAATTATTTAA
* * *
16041298 AAATAATTATATTTGATAA-TATTTAA
1 TATTAA-AATATTTGATAATTATTTAA
16041324 TATTAAAATAT
1 TATTAAAATAT
16041335 CACGTTATTA
Statistics
Matches: 64, Mismatches: 12, Indels: 16
0.70 0.13 0.17
Matches are distributed among these distances:
21 7 0.11
22 4 0.06
23 4 0.06
24 1 0.02
25 19 0.30
26 26 0.41
27 3 0.05
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.48
Consensus pattern (26 bp):
TATTAAAATATTTGATAATTATTTAA
Found at i:16041408 original size:23 final size:22
Alignment explanation
Indices: 16041381--16041597 Score: 108
Period size: 18 Copynumber: 10.9 Consensus size: 22
16041371 TATTATTCTT
*
16041381 TATATTATTTGTTAATATATTA
1 TATATTATTTATTAATATATTA
16041403 TCATATTATTTATT-A-ATA-TA
1 T-ATATTATTTATTAATATATTA
*
16041423 -ATATTATTTATTAATATATTT
1 TATATTATTTATTAATATATTA
*
16041444 TAATATTATTTATTAGAAATATT-
1 T-ATATTATTTATTA-ATATATTA
* * *
16041467 TAT-TAATATATT-AT-TATAA
1 TATATTATTTATTAATATATTA
*
16041486 TAT-TTATTAATT-A-ATA-T-
1 TATATTATTTATTAATATATTA
*
16041503 TATAGTATTTATTAATATATTA
1 TATATTATTTATTAATATATTA
*
16041525 -ATA-TA--TA--AATATAATA
1 TATATTATTTATTAATATATTA
*
16041541 T-TATTTATTTTTTAATATA---
1 TATA-TTATTTATTAATATATTA
*
16041560 T-TATTATTTATTCATATA--A
1 TATATTATTTATTAATATATTA
*
16041579 TATACTATTTATTAATATA
1 TATATTATTTATTAATATA
16041598 ATATTCTTTA
Statistics
Matches: 153, Mismatches: 19, Indels: 48
0.70 0.09 0.22
Matches are distributed among these distances:
16 10 0.07
17 3 0.02
18 39 0.25
19 19 0.12
20 26 0.17
21 15 0.10
22 10 0.07
23 25 0.16
24 6 0.04
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (22 bp):
TATATTATTTATTAATATATTA
Found at i:16041580 original size:53 final size:53
Alignment explanation
Indices: 16041403--16041582 Score: 130
Period size: 54 Copynumber: 3.2 Consensus size: 53
16041393 TAATATATTA
* * * * * * *
16041403 TCATATTATTTATTAATATAATATTATTTATTAATATATTTTAATATTATTTAT
1 TCATATAATATATTAATATAATATTATTTATT-TTTTAATATATTATTATTTAT
* * * *
16041457 T-AGA-AATATTTATTAATATATTATTATAATATTTATTAATTAATATTATAGTATTTAT
1 TCATATAATA--TATTAATATAATATTAT-TTATTTTTTAA-T-ATATTAT--TATTTAT
* *
16041515 TAATATATTAATATATAAATATAATATTATTTATTTTTTAATATATTATTATTTAT
1 T--CATA-TAATATATTAATATAATATTATTTATTTTTTAATATATTATTATTTAT
16041571 TCATATAATATA
1 TCATATAATATA
16041583 CTATTTATTA
Statistics
Matches: 97, Mismatches: 17, Indels: 25
0.70 0.12 0.18
Matches are distributed among these distances:
52 2 0.02
53 9 0.09
54 22 0.23
55 5 0.05
56 13 0.13
58 15 0.15
59 1 0.01
60 9 0.09
61 17 0.18
63 4 0.04
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (53 bp):
TCATATAATATATTAATATAATATTATTTATTTTTTAATATATTATTATTTAT
Found at i:16041588 original size:38 final size:38
Alignment explanation
Indices: 16041503--16041610 Score: 112
Period size: 38 Copynumber: 2.8 Consensus size: 38
16041493 TAATTAATAT
* *
16041503 TATAGTATTTATTAATATATTA--ATATATAAATATAA
1 TATACTATTTATTAATATATTATTATTTATAAATATAA
* * **
16041539 TATTATTTATTTTTTAATATATTATTATTTATTCATATAA
1 TA-TA-CTATTTATTAATATATTATTATTTATAAATATAA
* *
16041579 TATACTATTTATTAATATAATATTCTTTATAA
1 TATACTATTTATTAATATATTATTATTTATAA
16041611 GTAAAATTAT
Statistics
Matches: 57, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
36 2 0.04
37 2 0.04
38 38 0.67
39 2 0.04
40 13 0.23
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.55
Consensus pattern (38 bp):
TATACTATTTATTAATATATTATTATTTATAAATATAA
Found at i:16047196 original size:176 final size:176
Alignment explanation
Indices: 16046902--16047257 Score: 624
Period size: 176 Copynumber: 2.0 Consensus size: 176
16046892 GATGAGTTTA
* * * *
16046902 TAGAGGAGCCATAACACATAGAGAGAGAGCCAAATCATTATAGAGAAATGGGGTATGTCAAAGAT
1 TAGAGGAGCCACAACACATAGAGAGAAAGCCAAATCATCATAGAGAAAAGGGGTATGTCAAAGAT
**
16046967 AATGAAATTATTGGAGATCCAACTCAAGGGGTAAGAACTAGATCTTCATATAATGTATGTAATTA
66 AATGAAATTATTGGAGATCCAACTCAAAAGGTAAGAACTAGATCTTCATATAATGTATGTAATTA
16047032 TGTTGCCTTCTATCTCATTTTGAACCAAAAAATATAGATGAAGCCT
131 TGTTGCCTTCTATCTCATTTTGAACCAAAAAATATAGATGAAGCCT
*
16047078 TAGAGGAGCCACAACACATAGAGAGAAAGCCAAATCATCATAGA-AAAAGGAGGTATGTCAGAGA
1 TAGAGGAGCCACAACACATAGAGAGAAAGCCAAATCATCATAGAGAAAAGG-GGTATGTCAAAGA
*
16047142 TAATGAAATTATTGGTGATCCAACTCAAAAGGTAAGAACTAGATCTTCATATAATGTATGTAATT
65 TAATGAAATTATTGGAGATCCAACTCAAAAGGTAAGAACTAGATCTTCATATAATGTATGTAATT
16047207 ATGTTGCCTTCTATCTCATTTTGAACCAAAAAATATAGATGAAGCCT
130 ATGTTGCCTTCTATCTCATTTTGAACCAAAAAATATAGATGAAGCCT
16047254 TAGA
1 TAGA
16047258 AGATGATCAT
Statistics
Matches: 171, Mismatches: 8, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
175 5 0.03
176 166 0.97
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (176 bp):
TAGAGGAGCCACAACACATAGAGAGAAAGCCAAATCATCATAGAGAAAAGGGGTATGTCAAAGAT
AATGAAATTATTGGAGATCCAACTCAAAAGGTAAGAACTAGATCTTCATATAATGTATGTAATTA
TGTTGCCTTCTATCTCATTTTGAACCAAAAAATATAGATGAAGCCT
Found at i:16049125 original size:73 final size:74
Alignment explanation
Indices: 16049048--16049195 Score: 165
Period size: 74 Copynumber: 2.0 Consensus size: 74
16049038 AGCCAATTTT
* * * * *
16049048 AGTT-GAAACCATACAGAATCGATCGATCCCC-TTGGGACAGGATTGATCGGGTATTCAACCAGT
1 AGTTGGAAA-CATACAAAATCGATCGATCCCCTTTGGGACAAGATCGATCGAGTATTCAACCAAT
16049111 AGCTAAAAGA
65 AGCTAAAAGA
** * * * *
16049121 AGTTGGAAATGTGCAAAATCGATTGATCCCCTTTTGGACAAGATCGATTGAGTATTCAACCAATA
1 AGTTGGAAACATACAAAATCGATCGATCCCCTTTGGGACAAGATCGATCGAGTATTCAACCAATA
*
16049186 GTTAAAAGA
66 GCTAAAAGA
16049195 A
1 A
16049196 ACTAAAAATG
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
73 21 0.34
74 40 0.66
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.25
Consensus pattern (74 bp):
AGTTGGAAACATACAAAATCGATCGATCCCCTTTGGGACAAGATCGATCGAGTATTCAACCAATA
GCTAAAAGA
Found at i:16049192 original size:74 final size:74
Alignment explanation
Indices: 16049064--16049228 Score: 208
Period size: 74 Copynumber: 2.3 Consensus size: 74
16049054 AACCATACAG
* * * * * ** **
16049064 AATCGATCGATCCCC-TTGGGACAGGATTGATCGGGTATTCAACCAGTAGCTAAAAGAAGTTGGA
1 AATCGATCGATCCCCTTTTGGACAAGATCGATCGAGTATTCAACCAATAGCTAAAAGAAACTAAA
16049128 AATGTGCAA
66 AATGTGCAA
* * *
16049137 AATCGATTGATCCCCTTTTGGACAAGATCGATTGAGTATTCAACCAATAGTTAAAAGAAACTAAA
1 AATCGATCGATCCCCTTTTGGACAAGATCGATCGAGTATTCAACCAATAGCTAAAAGAAACTAAA
16049202 AATGTGCAA
66 AATGTGCAA
16049211 AATCGATCGAT-CCCTTTT
1 AATCGATCGATCCCCTTTT
16049229 AAAACCAATC
Statistics
Matches: 78, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
73 21 0.27
74 57 0.73
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (74 bp):
AATCGATCGATCCCCTTTTGGACAAGATCGATCGAGTATTCAACCAATAGCTAAAAGAAACTAAA
AATGTGCAA
Found at i:16051776 original size:20 final size:20
Alignment explanation
Indices: 16051751--16051802 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
16051741 CACCTAAGGC
16051751 AAGGGATCGATCCCCTCTTA
1 AAGGGATCGATCCCCTCTTA
16051771 AAGGGATCGATCCCCTCTTA
1 AAGGGATCGATCCCCTCTTA
16051791 AAGGGATCGATC
1 AAGGGATCGATC
16051803 GGTTGCTCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (20 bp):
AAGGGATCGATCCCCTCTTA
Found at i:16055975 original size:14 final size:14
Alignment explanation
Indices: 16055956--16055990 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
16055946 TAAAATTTAT
16055956 TAAAAATTTAATAA
1 TAAAAATTTAATAA
*
16055970 TAAAAAATTAATAA
1 TAAAAATTTAATAA
16055984 TAAAAAT
1 TAAAAAT
16055991 CATTTAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
TAAAAATTTAATAA
Found at i:16056337 original size:16 final size:15
Alignment explanation
Indices: 16056303--16056351 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
16056293 AAAAATCATT
*
16056303 TAAATTAAAATTTAT
1 TAAATTAAAATTTAA
16056318 TAAATTAAAATTTTAA
1 TAAATTAAAA-TTTAA
* *
16056334 TAAATGAGAATTTAA
1 TAAATTAAAATTTAA
16056349 TAA
1 TAA
16056352 TAAAAAAGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
15 18 0.60
16 12 0.40
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (15 bp):
TAAATTAAAATTTAA
Found at i:16056717 original size:2 final size:2
Alignment explanation
Indices: 16056676--16056700 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
16056666 AGTGTATTAA
16056676 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
16056701 AATGATAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:16057227 original size:13 final size:13
Alignment explanation
Indices: 16057204--16057245 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
16057194 GGAATCGGTA
*
16057204 AAAAAAAAAAACAG
1 AAAAAGAAAAA-AG
16057218 AAAAAGAAAAAAG
1 AAAAAGAAAAAAG
*
16057231 -AAAAGAAAAAGG
1 AAAAAGAAAAAAG
16057243 AAA
1 AAA
16057246 TTGCAAATGC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 11 0.44
13 4 0.16
14 10 0.40
ACGTcount: A:0.83, C:0.02, G:0.14, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAAAAG
Found at i:16057229 original size:18 final size:18
Alignment explanation
Indices: 16057205--16057241 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
16057195 GAATCGGTAA
*
16057205 AAAAAAAAAACAGAAAAAG
1 AAAAAAGAAA-AGAAAAAG
16057224 AAAAAAGAAAAGAAAAAG
1 AAAAAAGAAAAGAAAAAG
16057242 GAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.84, C:0.03, G:0.14, T:0.00
Consensus pattern (18 bp):
AAAAAAGAAAAGAAAAAG
Found at i:16057425 original size:1 final size:1
Alignment explanation
Indices: 16057393--16057417 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
16057383 TGGTCTCTCC
16057393 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
16057418 GGTTTTTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:16060774 original size:27 final size:28
Alignment explanation
Indices: 16060744--16060796 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
16060734 ATATTCATTC
*
16060744 TTGTTTTTATTGCATAT-AAAAAATATA
1 TTGTTTTCATTGCATATGAAAAAATATA
* *
16060771 TTGTTTTCATTGTATATGAGAAAATA
1 TTGTTTTCATTGCATATGAAAAAATA
16060797 AGCATTTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.38, C:0.04, G:0.11, T:0.47
Consensus pattern (28 bp):
TTGTTTTCATTGCATATGAAAAAATATA
Found at i:16060856 original size:19 final size:17
Alignment explanation
Indices: 16060825--16060859 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
16060815 TATTATAACG
16060825 AATAAAAAATGAAATTA
1 AATAAAAAATGAAATTA
16060842 AATAATAAAATTGAAATT
1 AATAA-AAAA-TGAAATT
16060860 TTTAATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 4 0.25
19 7 0.44
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.29
Consensus pattern (17 bp):
AATAAAAAATGAAATTA
Found at i:16063463 original size:19 final size:19
Alignment explanation
Indices: 16063439--16063480 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
16063429 TTTAGACTGA
16063439 AATATTATGATAAATTTTC
1 AATATTATGATAAATTTTC
* *
16063458 AATATTCTGATAAATTTTG
1 AATATTATGATAAATTTTC
16063477 AATA
1 AATA
16063481 AAATTTGACA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.45
Consensus pattern (19 bp):
AATATTATGATAAATTTTC
Found at i:16066635 original size:18 final size:17
Alignment explanation
Indices: 16066612--16066657 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 17
16066602 GACTTTTGTG
16066612 AAAGAAGAAAGAAA-AAGA
1 AAAGAA-AAA-AAAGAAGA
16066630 AAAGAAAAAAAAGGAAGA
1 AAAGAAAAAAAA-GAAGA
16066648 AAAGAAAAAA
1 AAAGAAAAAA
16066658 CCAAGAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 3 0.12
17 3 0.12
18 20 0.77
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (17 bp):
AAAGAAAAAAAAGAAGA
Found at i:16067121 original size:51 final size:49
Alignment explanation
Indices: 16067023--16067262 Score: 193
Period size: 51 Copynumber: 4.8 Consensus size: 49
16067013 TAGAGGCTCC
* * ** * *
16067023 ACAACTTTAAAAATCTTATC--ACAAAATGTCTTTTAACTA-AGGTTAA
1 ACAACTTTAAAAATCTCATCTTAAAAAAACTCTTCTAAATAGAGGTTAA
* *
16067069 ACAACTTTAAAAATCTTATCTTAAAAAACACTCTTCCTTAATAGAGGTTAA
1 ACAACTTTAAAAATCTCATCTTAAAAAA-ACTCTT-CTAAATAGAGGTTAA
* * * *
16067120 ACAATTTTAAAAATCTCATCTTGAAAAAAGCTCCTCTAAAATAGAGGCTAA
1 ACAACTTTAAAAATCTCATCTT-AAAAAAACTCTTCT-AAATAGAGGTTAA
* * * * **
16067171 ACAATTTTAAAAAATCTCATC-TAAAATAAACTCTTTCTAAACAAAAGTATTG
1 ACAACTTT-AAAAATCTCATCTTAAAA-AAACTC-TTCTAAATAGAGGT-TAA
16067223 A-AACTTTAAAAATCTCATCTTAAAAAACACTCTTCCTAAA
1 ACAACTTTAAAAATCTCATCTTAAAAAA-ACTCTT-CTAAA
16067263 CAACAATAGT
Statistics
Matches: 159, Mismatches: 21, Indels: 23
0.78 0.10 0.11
Matches are distributed among these distances:
46 20 0.13
48 5 0.03
49 4 0.03
50 26 0.16
51 81 0.51
52 23 0.14
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.32
Consensus pattern (49 bp):
ACAACTTTAAAAATCTCATCTTAAAAAAACTCTTCTAAATAGAGGTTAA
Found at i:16067263 original size:51 final size:51
Alignment explanation
Indices: 16067066--16067300 Score: 180
Period size: 51 Copynumber: 4.6 Consensus size: 51
16067056 TAACTAAGGT
* * * * *
16067066 TAAACAACTTTAAAAATCTTATCTTAAAAAACACTCTTCCTTAATAGAGGT-
1 TAAACAACTTTAAAAATCTCATCTTAAAAAA-ACTCTTCCTAAACAAAAGTA
* * * * **
16067117 TAAACAATTTTAAAAATCTCATCTTGAAAAAAGCTCCT-CTAAA-ATAGAGGC
1 TAAACAACTTTAAAAATCTCATCTT-AAAAAAACTCTTCCTAAACA-AAAGTA
* *
16067168 TAAACAATTTTAAAAAATCTCATC-TAAAATAAACTCTTTCTAAACAAAAGTA
1 TAAACAACTTT-AAAAATCTCATCTTAAAA-AAACTCTTCCTAAACAAAAGTA
**
16067220 TTGA-AACTTTAAAAATCTCATCTTAAAAAACACTCTTCCTAAACAACAA-TA
1 TAAACAACTTTAAAAATCTCATCTTAAAAAA-ACTCTTCCTAAACAA-AAGTA
* * *
16067271 GT-GA-AACTTTGAAAATCTCATCTCAAAAAA
1 -TAAACAACTTTAAAAATCTCATCTTAAAAAA
16067301 GCTTTTTTAA
Statistics
Matches: 153, Mismatches: 20, Indels: 22
0.78 0.10 0.11
Matches are distributed among these distances:
49 1 0.01
50 23 0.15
51 97 0.63
52 31 0.20
53 1 0.01
ACGTcount: A:0.47, C:0.18, G:0.06, T:0.30
Consensus pattern (51 bp):
TAAACAACTTTAAAAATCTCATCTTAAAAAAACTCTTCCTAAACAAAAGTA
Found at i:16070436 original size:29 final size:29
Alignment explanation
Indices: 16070394--16070451 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
16070384 ATTCCATTTG
*
16070394 CTAGGGTAGTGCTTTCAAAGCAACTTGAA
1 CTAGGGTAATGCTTTCAAAGCAACTTGAA
*
16070423 CTAGGGTAATGCTTTCAAAGTAACTTGAA
1 CTAGGGTAATGCTTTCAAAGCAACTTGAA
16070452 AATAAGGTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (29 bp):
CTAGGGTAATGCTTTCAAAGCAACTTGAA
Found at i:16083582 original size:18 final size:18
Alignment explanation
Indices: 16083560--16083594 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
16083550 AAATTTACAA
16083560 AAAAAAAATT-GAAAAAT
1 AAAAAAAATTAGAAAAAT
16083577 AAAAAAAATTAGAAAAAT
1 AAAAAAAATTAGAAAAAT
16083595 TGTAGCTTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (18 bp):
AAAAAAAATTAGAAAAAT
Found at i:16088386 original size:12 final size:12
Alignment explanation
Indices: 16088369--16088397 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
16088359 TTTCAACAAA
16088369 GATTGTTTCCTT
1 GATTGTTTCCTT
16088381 GATTGTTTCCTT
1 GATTGTTTCCTT
16088393 GATTG
1 GATTG
16088398 ATTTACATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.10, C:0.14, G:0.21, T:0.55
Consensus pattern (12 bp):
GATTGTTTCCTT
Found at i:16088478 original size:39 final size:39
Alignment explanation
Indices: 16088405--16088483 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
16088395 TTGATTTACA
* * * *
16088405 TTCTTTTGATTTTCAGCAAATATTGTTTCCTTAATTCCT
1 TTCTCTTGATTTTCAACAAAGATTATTTCCTTAATTCCT
*
16088444 TTCTCTTGATTTTCAACAAAGATTATTTCTTTAATTCCT
1 TTCTCTTGATTTTCAACAAAGATTATTTCCTTAATTCCT
16088483 T
1 T
16088484 CATTAATTGA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.23, C:0.18, G:0.06, T:0.53
Consensus pattern (39 bp):
TTCTCTTGATTTTCAACAAAGATTATTTCCTTAATTCCT
Found at i:16089816 original size:20 final size:18
Alignment explanation
Indices: 16089786--16089829 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
16089776 ATTGCATAGT
*
16089786 ATTTATTTTTGCATGACTA
1 ATTTATCTTTGCATGA-TA
16089805 ATATTATCTTTGCATGATA
1 AT-TTATCTTTGCATGATA
16089824 ATTTAT
1 ATTTAT
16089830 TTGTCTAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 4 0.17
19 6 0.26
20 13 0.57
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.52
Consensus pattern (18 bp):
ATTTATCTTTGCATGATA
Found at i:16089936 original size:47 final size:47
Alignment explanation
Indices: 16089835--16089973 Score: 142
Period size: 47 Copynumber: 2.9 Consensus size: 47
16089825 TTTATTTGTC
* * **
16089835 TAATATATTTGTTTGCATGATTA-ATGTATTTATTTGTGTGATTTAT
1 TAATATATTTATTTGTATGATTATATGTATTTATTTGCATGATTTAT
*
16089881 TAATATATTTATTTGTATGATTATATTTAATTTGA-TTGCATGA-TTAT
1 TAATATATTTATTTGTATGATTATATGT-ATTT-ATTTGCATGATTTAT
* *
16089928 TAATATATTTAATTGCT-TGATTATTGATATATTTATTTGCATGATT
1 TAATATATTTATTTG-TATGATTA-T-ATGTATTTATTTGCATGATT
16089974 ATATATTTAA
Statistics
Matches: 78, Mismatches: 7, Indels: 13
0.80 0.07 0.13
Matches are distributed among these distances:
46 21 0.27
47 28 0.36
48 24 0.31
49 5 0.06
ACGTcount: A:0.29, C:0.03, G:0.12, T:0.55
Consensus pattern (47 bp):
TAATATATTTATTTGTATGATTATATGTATTTATTTGCATGATTTAT
Found at i:16089942 original size:24 final size:24
Alignment explanation
Indices: 16089854--16089996 Score: 118
Period size: 24 Copynumber: 6.1 Consensus size: 24
16089844 TGTTTGCATG
* * **
16089854 ATTAATGTATTTATTTGTGTGATTT
1 ATTAATATATTTAATTGCATGA-TT
* *
16089879 ATTAATATATTTATTTGTATGATT
1 ATTAATATATTTAATTGCATGATT
* *
16089903 A-T-ATTTAATTTGATTGCATGATT
1 ATTAATAT-ATTTAATTGCATGATT
*
16089926 ATTAATATATTTAATTGCTTGATT
1 ATTAATATATTTAATTGCATGATT
* *
16089950 ATTGATATATTTATTTGCATG---
1 ATTAATATATTTAATTGCATGATT
*
16089971 ATT-ATATATTTAATTGCATGTTT
1 ATTAATATATTTAATTGCATGATT
16089994 ATT
1 ATT
16089997 TACATGATTT
Statistics
Matches: 99, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
20 16 0.16
21 3 0.03
22 3 0.03
23 18 0.18
24 36 0.36
25 23 0.23
ACGTcount: A:0.30, C:0.03, G:0.11, T:0.56
Consensus pattern (24 bp):
ATTAATATATTTAATTGCATGATT
Found at i:16090037 original size:55 final size:55
Alignment explanation
Indices: 16089954--16090269 Score: 375
Period size: 55 Copynumber: 5.8 Consensus size: 55
16089944 TTGATTATTG
* * *
16089954 ATATATTTATTTGCATGATTATATATTTAATTGCATGTTTATTTACATGATTTAT
1 ATATTTTTATTTGCATGATTATATATTTAATTACATGTTTATTTGCATGATTTAT
* * * * * *
16090009 GTATTTTTAGTTGTATGATTATATATTTAACTACATATTTATTTGCATGGTTTAT
1 ATATTTTTATTTGCATGATTATATATTTAATTACATGTTTATTTGCATGATTTAT
* * *
16090064 ATGTTTTTATTTGCATGATTATATATTTAATTGCATGTTTATTTACATGATTTAT
1 ATATTTTTATTTGCATGATTATATATTTAATTACATGTTTATTTGCATGATTTAT
* * * * * * * *
16090119 GTATTATTAGTTGTATGATTATATATTTAACTAAATATTTATTTGCATGGTTTAT
1 ATATTTTTATTTGCATGATTATATATTTAATTACATGTTTATTTGCATGATTTAT
* * *
16090174 ATGTTTTTATTTGCATGATTATATATTTAATTGCATGTTTAATTGCAT-ATTT-T
1 ATATTTTTATTTGCATGATTATATATTTAATTACATGTTTATTTGCATGATTTAT
* * * *
16090227 ACATTGTTACTTGCATGATTATATATTTAATTACATGATTATT
1 ATATTTTTATTTGCATGATTATATATTTAATTACATGTTTATT
16090270 AATTTATTTA
Statistics
Matches: 214, Mismatches: 47, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
53 37 0.17
54 3 0.01
55 174 0.81
ACGTcount: A:0.29, C:0.06, G:0.11, T:0.54
Consensus pattern (55 bp):
ATATTTTTATTTGCATGATTATATATTTAATTACATGTTTATTTGCATGATTTAT
Found at i:16090089 original size:110 final size:110
Alignment explanation
Indices: 16089959--16090262 Score: 504
Period size: 110 Copynumber: 2.8 Consensus size: 110
16089949 TATTGATATA
*
16089959 TTTATTTGCATGATTATATATTTAATTGCATGTTTATTTACATGATTTATGTATTTTTAGTTGTA
1 TTTATTTGCATGATTATATATTTAATTGCATGTTTATTTACATGATTTATGTATTATTAGTTGTA
16090024 TGATTATATATTTAACTACATATTTATTTGCATGGTTTATATGTT
66 TGATTATATATTTAACTACATATTTATTTGCATGGTTTATATGTT
16090069 TTTATTTGCATGATTATATATTTAATTGCATGTTTATTTACATGATTTATGTATTATTAGTTGTA
1 TTTATTTGCATGATTATATATTTAATTGCATGTTTATTTACATGATTTATGTATTATTAGTTGTA
*
16090134 TGATTATATATTTAACTAAATATTTATTTGCATGGTTTATATGTT
66 TGATTATATATTTAACTACATATTTATTTGCATGGTTTATATGTT
* * ** * * *
16090179 TTTATTTGCATGATTATATATTTAATTGCATGTTTAATTGCAT-ATTT-TACATTGTTACTTGCA
1 TTTATTTGCATGATTATATATTTAATTGCATGTTTATTTACATGATTTATGTATTATTAGTTGTA
*
16090242 TGATTATATATTTAATTACAT
66 TGATTATATATTTAACTACAT
16090263 GATTATTAAT
Statistics
Matches: 183, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
108 30 0.16
109 4 0.02
110 149 0.81
ACGTcount: A:0.29, C:0.06, G:0.11, T:0.54
Consensus pattern (110 bp):
TTTATTTGCATGATTATATATTTAATTGCATGTTTATTTACATGATTTATGTATTATTAGTTGTA
TGATTATATATTTAACTACATATTTATTTGCATGGTTTATATGTT
Found at i:16090374 original size:19 final size:19
Alignment explanation
Indices: 16090337--16090375 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
16090327 TTTATTATTA
* *
16090337 TTATTGCATGATTTTATAT
1 TTATTGCATGATATGATAT
16090356 TTATTGCATGATATGATAT
1 TTATTGCATGATATGATAT
16090375 T
1 T
16090376 ATATGTTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.28, C:0.05, G:0.13, T:0.54
Consensus pattern (19 bp):
TTATTGCATGATATGATAT
Found at i:16090384 original size:25 final size:24
Alignment explanation
Indices: 16090344--16090401 Score: 82
Period size: 24 Copynumber: 2.4 Consensus size: 24
16090334 TTATTATTGC
*
16090344 ATGATTTTATATTTATTGCATGAT
1 ATGATATTATATTTATTGCATGAT
16090368 ATGATATTATATGTTATTGCATGAT
1 ATGATATTATAT-TTATTGCATGAT
*
16090393 -TAATATTAT
1 ATGATATTAT
16090402 GTTTGAATGA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 19 0.61
25 12 0.39
ACGTcount: A:0.33, C:0.03, G:0.12, T:0.52
Consensus pattern (24 bp):
ATGATATTATATTTATTGCATGAT
Found at i:16090636 original size:20 final size:18
Alignment explanation
Indices: 16090568--16090636 Score: 70
Period size: 18 Copynumber: 3.8 Consensus size: 18
16090558 TTCCATGATA
*
16090568 ATATATTTGCATGATATT
1 ATATATTTACATGATATT
*
16090586 ATATATTTATATGATTATT
1 ATATATTTACATGA-TATT
16090605 AT-TA-TTACATGATAATT
1 ATATATTTACATGAT-ATT
*
16090622 AATATATTTGCATGA
1 -ATATATTTACATGA
16090637 CATTCTTGCA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
16 1 0.02
17 10 0.24
18 16 0.38
19 8 0.19
20 7 0.17
ACGTcount: A:0.38, C:0.04, G:0.09, T:0.49
Consensus pattern (18 bp):
ATATATTTACATGATATT
Found at i:16092501 original size:21 final size:21
Alignment explanation
Indices: 16092475--16092571 Score: 110
Period size: 21 Copynumber: 4.6 Consensus size: 21
16092465 TTGAGCAACC
*
16092475 GATCGATCCCTTTAAGAGAGG
1 GATCGATCCCTTTATGAGAGG
16092496 GATCGATCCCTTTATGAGAGG
1 GATCGATCCCTTTATGAGAGG
* *
16092517 GATCGATCCC-TTACCTTAG-GT
1 GATCGATCCCTTTA--TGAGAGG
*
16092538 GATTGATCCC-TTATGTAGAGG
1 GATCGATCCCTTTATG-AGAGG
16092559 GATCGATCCCTTT
1 GATCGATCCCTTT
16092572 TCTGGAAATT
Statistics
Matches: 64, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
19 1 0.02
20 5 0.08
21 53 0.83
22 5 0.08
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.31
Consensus pattern (21 bp):
GATCGATCCCTTTATGAGAGG
Found at i:16100370 original size:13 final size:13
Alignment explanation
Indices: 16100352--16100377 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
16100342 AGAATCTTTT
16100352 CATTCATTGCATA
1 CATTCATTGCATA
16100365 CATTCATTGCATA
1 CATTCATTGCATA
16100378 TGTTTGGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (13 bp):
CATTCATTGCATA
Found at i:16100598 original size:43 final size:43
Alignment explanation
Indices: 16100550--16101114 Score: 558
Period size: 43 Copynumber: 13.1 Consensus size: 43
16100540 GAACGATCTC
* * * *
16100550 TTTTATTTTCCAAAAGTTTCAAAGCCTCAATTGTAGAGGAGCA
1 TTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGGGGAGCA
* *
16100593 TTTTATTTTTCAAAAGTTTTAAAGCTTCAGTTGTTTAATTGTGGGGGAGCA
1 TTTTATTTTTCAAAAGTTTCAAAGCCTCA---G-----TTGTGGGGGAGCA
*
16100644 TTTTAATTTTTC-AAAGTTTCAAAGCCTCAGTTGTGGGGGAGAA
1 TTTT-ATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGGGGAGCA
* * * **
16100687 TTTTACTTTTCCAAAGTTCCAAAGCCTCAGTTGTGGAAGAGCA
1 TTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGGGGAGCA
* * * *
16100730 TGTTATTTTTCAAAAGTTCCAAAGCCTCAATTGTGGGGAAGCA
1 TTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGGGGAGCA
* * *
16100773 TTTTTTTTTTCAAAA-TTTCTAAAGCCTCAGTTGTGAGGGAACA
1 TTTTATTTTTCAAAAGTTTC-AAAGCCTCAGTTGTGGGGGAGCA
* *
16100816 TTTTATTTTTC-AAAGTTTCAAAGCCTCAATTGTGGGGGAACA
1 TTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGGGGAGCA
*
16100858 TTTTA-TTTTCAAAAG-TTCTAAAGCCTCAGTTGTGGGAGAGCA
1 TTTTATTTTTCAAAAGTTTC-AAAGCCTCAGTTGTGGGGGAGCA
* *** *
16100900 TTTTATATTTCAAAAGTTTCAAAGCCTCAGTTGTGGAAAAGTA
1 TTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGGGGAGCA
* * * * * ***
16100943 TTTTCTTTTCCAAAAGTTTCAATGCCCCAGTTATGGAAAAGCA
1 TTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGGGGAGCA
* * *
16100986 TTTTATTGTTC-AAAGTTTAAAAGCCTC-GATTGTGTGGGA-CTA
1 TTTTATTTTTCAAAAGTTTCAAAGCCTCAG-TTGTGGGGGAGC-A
* * *
16101028 TTTTA-TTTTCAAAAGTTCCAAA--CTCAATTGTGGGGGATCA
1 TTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGGGGAGCA
*
16101068 TTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGGGGAGTA
1 TTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGGGGAGCA
16101111 TTTT
1 TTTT
16101115 TCAAAAAAAA
Statistics
Matches: 433, Mismatches: 65, Indels: 48
0.79 0.12 0.09
Matches are distributed among these distances:
40 18 0.04
41 31 0.07
42 100 0.23
43 243 0.56
44 3 0.01
48 1 0.00
51 30 0.07
52 7 0.02
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38
Consensus pattern (43 bp):
TTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGGGGAGCA
Done.