Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25818110
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 67000 characters in sequence are not A, C, G, or T
File 85 of 127
Found at i:16271949 original size:15 final size:15
Alignment explanation
Indices: 16271931--16271963 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
16271921 TTTTTTAGAA
16271931 TTTTAAATTTTAAGG
1 TTTTAAATTTTAAGG
*
16271946 TTTTTAATTTTAAGG
1 TTTTAAATTTTAAGG
16271961 TTT
1 TTT
16271964 CGGATTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.61
Consensus pattern (15 bp):
TTTTAAATTTTAAGG
Found at i:16272003 original size:28 final size:27
Alignment explanation
Indices: 16271966--16272047 Score: 85
Period size: 27 Copynumber: 3.0 Consensus size: 27
16271956 TAAGGTTTCG
*
16271966 GATTTTAGATTTTAAGG-TTAGGGTTTT
1 GATTTCAGATTTTAAGGTTTA-GGTTTT
*
16271993 GAGTTTCAGATTTTAGGGTTTAGGTTTT
1 GA-TTTCAGATTTTAAGGTTTAGGTTTT
** * *
16272021 GATTTCAGGGTTTGAGGTTTTGGTTTT
1 GATTTCAGATTTTAAGGTTTAGGTTTT
16272048 AGGGTTCGAG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
27 22 0.48
28 21 0.46
29 3 0.07
ACGTcount: A:0.17, C:0.02, G:0.29, T:0.51
Consensus pattern (27 bp):
GATTTCAGATTTTAAGGTTTAGGTTTT
Found at i:16272038 original size:21 final size:21
Alignment explanation
Indices: 16271983--16272061 Score: 90
Period size: 21 Copynumber: 3.8 Consensus size: 21
16271973 GATTTTAAGG
*
16271983 TTAGGGTTTTGA-GTTTCAGATT
1 TTAGGG-TTTGAGGTTT-TGATT
16272005 TTAGGGTTT-AGGTTTTGATT
1 TTAGGGTTTGAGGTTTTGATT
* *
16272025 TCAGGGTTTGAGGTTTTGGTT
1 TTAGGGTTTGAGGTTTTGATT
*
16272046 TTAGGGTTCGAGGTTT
1 TTAGGGTTTGAGGTTT
16272062 GAGGTTTTAG
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
20 13 0.26
21 31 0.62
22 6 0.12
ACGTcount: A:0.14, C:0.04, G:0.33, T:0.49
Consensus pattern (21 bp):
TTAGGGTTTGAGGTTTTGATT
Found at i:16272206 original size:16 final size:16
Alignment explanation
Indices: 16272185--16272232 Score: 51
Period size: 21 Copynumber: 2.7 Consensus size: 16
16272175 GGGGTTTTGT
16272185 TTTAGGGTTTGAAGGA
1 TTTAGGGTTTGAAGGA
16272201 TTTAGGGTAGAGTTTGAAGGA
1 TTTA--G--G-GTTTGAAGGA
16272222 TTTAGGGTTTG
1 TTTAGGGTTTG
16272233 GATTTTAGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 10
0.73 0.00 0.27
Matches are distributed among these distances:
16 9 0.33
17 1 0.04
18 1 0.04
19 1 0.04
20 1 0.04
21 14 0.52
ACGTcount: A:0.23, C:0.00, G:0.38, T:0.40
Consensus pattern (16 bp):
TTTAGGGTTTGAAGGA
Found at i:16272208 original size:29 final size:30
Alignment explanation
Indices: 16272036--16272208 Score: 104
Period size: 28 Copynumber: 6.1 Consensus size: 30
16272026 CAGGGTTTGA
* *
16272036 GGTTTTGGTTTTAGGGTTCG-AGG-TTT-G
1 GGTTTTAGTTTTAGGGTTTGAAGGATTTAG
*
16272063 AGGTTTTAGTTTTAGCGTTT-AGAGGATTTAG
1 -GGTTTTAGTTTTAGGGTTTGA-AGGATTTAG
* * *
16272094 GGTTTT-GATTTTAGGGTCTG--GGGTTTAA
1 GGTTTTAG-TTTTAGGGTTTGAAGGATTTAG
* * * *
16272122 GGTTTTAGCTTTAGGTTTTGGAGGATGTA-
1 GGTTTTAGTTTTAGGGTTTGAAGGATTTAG
* *
16272151 ---TTT-GTTTTAGGGTTT-AGAGGGTTTGG
1 GGTTTTAGTTTTAGGGTTTGA-AGGATTTAG
16272177 GGTTTT-GTTTTAGGGTTTGAAGGATTTAG
1 GGTTTTAGTTTTAGGGTTTGAAGGATTTAG
16272206 GGT
1 GGT
16272209 AGAGTTTGAA
Statistics
Matches: 110, Mismatches: 20, Indels: 29
0.69 0.13 0.18
Matches are distributed among these distances:
25 15 0.14
26 3 0.03
28 37 0.34
29 30 0.27
30 24 0.22
31 1 0.01
ACGTcount: A:0.15, C:0.02, G:0.36, T:0.47
Consensus pattern (30 bp):
GGTTTTAGTTTTAGGGTTTGAAGGATTTAG
Found at i:16272241 original size:14 final size:14
Alignment explanation
Indices: 16272222--16272310 Score: 88
Period size: 14 Copynumber: 6.2 Consensus size: 14
16272212 GTTTGAAGGA
*
16272222 TTTAGGGTTTGGAT
1 TTTAGGGTTTGAAT
* *
16272236 TTTAGGGTTTTAAAG
1 TTTAGGG-TTTGAAT
* *
16272251 TTTAGGATTTGGAT
1 TTTAGGGTTTGAAT
* *
16272265 TTTAGGGTTTCAGT
1 TTTAGGGTTTGAAT
*
16272279 TTTAGGGTTATGAAA
1 TTTAGGGTT-TGAAT
16272294 TTTAGGGTTTGAAT
1 TTTAGGGTTTGAAT
16272308 TTT
1 TTT
16272311 TTAATTTTTA
Statistics
Matches: 58, Mismatches: 15, Indels: 4
0.75 0.19 0.05
Matches are distributed among these distances:
14 37 0.64
15 21 0.36
ACGTcount: A:0.21, C:0.01, G:0.28, T:0.49
Consensus pattern (14 bp):
TTTAGGGTTTGAAT
Found at i:16272282 original size:43 final size:43
Alignment explanation
Indices: 16272222--16272310 Score: 110
Period size: 43 Copynumber: 2.1 Consensus size: 43
16272212 GTTTGAAGGA
* * *
16272222 TTTAGGGTTTGGATTTTAGGGTT-TTAAAGTTTAGGATTTGGAT
1 TTTAGGGTTTAGATTTTAGGGTTATGAAA-TTTAGGATTTGAAT
*
16272265 TTTAGGGTTTCAG-TTTTAGGGTTATGAAATTTAGGGTTTGAAT
1 TTTAGGGTTT-AGATTTTAGGGTTATGAAATTTAGGATTTGAAT
16272308 TTT
1 TTT
16272311 TTAATTTTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
43 35 0.88
44 5 0.12
ACGTcount: A:0.21, C:0.01, G:0.28, T:0.49
Consensus pattern (43 bp):
TTTAGGGTTTAGATTTTAGGGTTATGAAATTTAGGATTTGAAT
Found at i:16272310 original size:29 final size:28
Alignment explanation
Indices: 16272222--16272310 Score: 97
Period size: 29 Copynumber: 3.1 Consensus size: 28
16272212 GTTTGAAGGA
*
16272222 TTTAGGGTTTGGATTTTAGGGTTTTAAAG
1 TTTAGGGTTTGGATTTTAGGG-TTTAAAT
* * *
16272251 TTTAGGATTTGGATTTTAGGGTTTCAGT
1 TTTAGGGTTTGGATTTTAGGGTTTAAAT
* * *
16272279 TTTAGGGTTATGAAATTTAGGGTTTGAAT
1 TTTAGGGTT-TGGATTTTAGGGTTTAAAT
16272308 TTT
1 TTT
16272311 TTAATTTTTA
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
28 12 0.24
29 38 0.76
ACGTcount: A:0.21, C:0.01, G:0.28, T:0.49
Consensus pattern (28 bp):
TTTAGGGTTTGGATTTTAGGGTTTAAAT
Found at i:16272447 original size:3 final size:3
Alignment explanation
Indices: 16272439--16272477 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
16272429 TTATAAAAAT
* *
16272439 TTA TTA TTA TTA TTA AT- TTA TTA TCA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
16272478 GCTTTTTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
2 1 0.03
3 30 0.97
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:16272456 original size:17 final size:17
Alignment explanation
Indices: 16272436--16272470 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
16272426 TTTTTATAAA
*
16272436 AATTTATTATTATTATT
1 AATTTATTATCATTATT
16272453 AATTTATTATCATTATT
1 AATTTATTATCATTATT
16272470 A
1 A
16272471 TTATTATGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (17 bp):
AATTTATTATCATTATT
Found at i:16273784 original size:10 final size:10
Alignment explanation
Indices: 16273771--16273806 Score: 63
Period size: 10 Copynumber: 3.6 Consensus size: 10
16273761 TTTTTTGCCA
16273771 TTTTTTTTAT
1 TTTTTTTTAT
16273781 TTTTTTTTAT
1 TTTTTTTTAT
*
16273791 TTTTTTATAT
1 TTTTTTTTAT
16273801 TTTTTT
1 TTTTTT
16273807 CAATATTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (10 bp):
TTTTTTTTAT
Found at i:16273786 original size:20 final size:20
Alignment explanation
Indices: 16273761--16273807 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
16273751 GCCTCTCTGC
*
16273761 TTTTTTGCCATTTTTTT-TA
1 TTTTTTTCCATTTTTTTATA
**
16273780 TTTTTTTTTATTTTTTTATA
1 TTTTTTTCCATTTTTTTATA
16273800 TTTTTTTC
1 TTTTTTTC
16273808 AATATTAAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.11, C:0.06, G:0.02, T:0.81
Consensus pattern (20 bp):
TTTTTTTCCATTTTTTTATA
Found at i:16274125 original size:37 final size:37
Alignment explanation
Indices: 16274075--16274155 Score: 99
Period size: 37 Copynumber: 2.2 Consensus size: 37
16274065 ATGACGTTGC
* * *
16274075 AAGTCAAGAAATAAAGAATTGACTGGGACAACACCAT
1 AAGTCAAGAAATAAAGAATCGACCGAGACAACACCAT
* * * *
16274112 AAGTCGAGGAATAAAGAATCGACCGAGACAACACTAC
1 AAGTCAAGAAATAAAGAATCGACCGAGACAACACCAT
16274149 AAGTCAA
1 AAGTCAA
16274156 AATCATGCTC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.48, C:0.19, G:0.20, T:0.14
Consensus pattern (37 bp):
AAGTCAAGAAATAAAGAATCGACCGAGACAACACCAT
Found at i:16274198 original size:22 final size:22
Alignment explanation
Indices: 16274155--16274199 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
16274145 CTACAAGTCA
* * * *
16274155 AAATCATGCTCGGAGTTTTTAG
1 AAATCATACTCGAAGGTCTTAG
16274177 AAATCATACTCGAAGGTCTTAG
1 AAATCATACTCGAAGGTCTTAG
16274199 A
1 A
16274200 GATTGTGCCC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (22 bp):
AAATCATACTCGAAGGTCTTAG
Found at i:16274578 original size:22 final size:22
Alignment explanation
Indices: 16274550--16274619 Score: 88
Period size: 22 Copynumber: 3.2 Consensus size: 22
16274540 CCGTGAATTG
16274550 AAATTATGCCTAGAGGTCTTAA
1 AAATTATGCCTAGAGGTCTTAA
* *
16274572 AAATTATGCCTAGAGGTTTTAG
1 AAATTATGCCTAGAGGTCTTAA
* *
16274594 AAATCATGCCCAGAGG-CTTACA
1 AAATTATGCCTAGAGGTCTTA-A
16274616 AAAT
1 AAAT
16274620 CGACTGAGAC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
21 3 0.07
22 38 0.93
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.29
Consensus pattern (22 bp):
AAATTATGCCTAGAGGTCTTAA
Found at i:16274734 original size:22 final size:22
Alignment explanation
Indices: 16274682--16274734 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
16274672 CTACGAATCA
16274682 AAATTATGCCCGGAGGTCTTAG
1 AAATTATGCCCGGAGGTCTTAG
*
16274704 AAATCATGCCCGGAGGTCTTAG
1 AAATTATGCCCGGAGGTCTTAG
*
16274726 AGATTATGC
1 AAATTATGC
16274735 TTGAAGGTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (22 bp):
AAATTATGCCCGGAGGTCTTAG
Found at i:16275021 original size:41 final size:41
Alignment explanation
Indices: 16274976--16275068 Score: 143
Period size: 41 Copynumber: 2.3 Consensus size: 41
16274966 TAAATAGAGG
**
16274976 CTTTGAAAACTTGATTGAAATTGGTTCCTCTTAAACAAAGA
1 CTTTGAAAACTTGATTGAAAACGGTTCCTCTTAAACAAAGA
*
16275017 CTTTGAAATCTTGATTGAAAACGGTTCCTCTTAAACAAAGA
1 CTTTGAAAACTTGATTGAAAACGGTTCCTCTTAAACAAAGA
*
16275058 -TTTTAAAACTT
1 CTTTGAAAACTT
16275069 TAAAATCTTG
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 9 0.19
41 38 0.81
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (41 bp):
CTTTGAAAACTTGATTGAAAACGGTTCCTCTTAAACAAAGA
Found at i:16275395 original size:15 final size:15
Alignment explanation
Indices: 16275375--16275404 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
16275365 CCTTATACAA
16275375 ATGCAAATGCAAATG
1 ATGCAAATGCAAATG
*
16275390 ATGCAAATGCGAATG
1 ATGCAAATGCAAATG
16275405 TCTTTCTTGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.13, G:0.23, T:0.20
Consensus pattern (15 bp):
ATGCAAATGCAAATG
Found at i:16275437 original size:26 final size:26
Alignment explanation
Indices: 16275388--16275439 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16275378 CAAATGCAAA
* *
16275388 TGATGCAAATGCGAATGTCTTTCTTG
1 TGATGCAAATGCGAAAGACTTTCTTG
16275414 TGATGCAAATGC-AAAGACTATTCTTG
1 TGATGCAAATGCGAAAGACT-TTCTTG
16275440 GCCTCCCTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (26 bp):
TGATGCAAATGCGAAAGACTTTCTTG
Found at i:16276827 original size:1 final size:1
Alignment explanation
Indices: 16276816--16276883 Score: 55
Period size: 1 Copynumber: 68.0 Consensus size: 1
16276806 TAAAGATGTC
* ** * * ** * *
16276816 TTTTTTGTTTTTTTTTTTTGCTTTTTTGTTTTTATTTTTTTTACTTTTTTTTTTTGTTTTTGTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
16276881 TTT
1 TTT
16276884 CTGTGATGCC
Statistics
Matches: 51, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 51 1.00
ACGTcount: A:0.03, C:0.03, G:0.07, T:0.87
Consensus pattern (1 bp):
T
Found at i:16276856 original size:28 final size:27
Alignment explanation
Indices: 16276817--16276883 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 27
16276807 AAAGATGTCT
* *
16276817 TTTTTGTTTTTTTT-TTTTGCTTTTTTG
1 TTTTTATTTTTTTTATTTT-TTTTTTTG
16276844 TTTTTATTTTTTTTACTTTTTTTTTTTG
1 TTTTTATTTTTTTTA-TTTTTTTTTTTG
*
16276872 TTTTTGTTTTTT
1 TTTTTATTTTTT
16276884 CTGTGATGCC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
27 13 0.37
28 18 0.51
29 4 0.11
ACGTcount: A:0.03, C:0.03, G:0.07, T:0.87
Consensus pattern (27 bp):
TTTTTATTTTTTTTATTTTTTTTTTTG
Found at i:16283471 original size:21 final size:22
Alignment explanation
Indices: 16283447--16283487 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
16283437 CGAGTTTCAG
*
16283447 ATTTTAGGGTTT-AGGTTTTTT
1 ATTTCAGGGTTTAAGGTTTTTT
16283468 ATTTCAGGGTTTAAGGTTTT
1 ATTTCAGGGTTTAAGGTTTT
16283488 GGTTTTAGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.17, C:0.02, G:0.24, T:0.56
Consensus pattern (22 bp):
ATTTCAGGGTTTAAGGTTTTTT
Found at i:16283497 original size:21 final size:19
Alignment explanation
Indices: 16283448--16283499 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 19
16283438 GAGTTTCAGA
*
16283448 TTTTAGGGTTTAGGTTTTT
1 TTTTAGGGTTTAGGTTTTG
16283467 TATTTCAGGGTTTAAGGTTTTGG
1 T-TTT-AGGGTTT-AGGTTTT-G
16283490 TTTTAGGGTT
1 TTTTAGGGTT
16283500 CGAGGTTTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
19 1 0.04
20 3 0.11
21 13 0.46
22 10 0.36
23 1 0.04
ACGTcount: A:0.13, C:0.02, G:0.29, T:0.56
Consensus pattern (19 bp):
TTTTAGGGTTTAGGTTTTG
Found at i:16283506 original size:28 final size:28
Alignment explanation
Indices: 16283475--16283660 Score: 121
Period size: 29 Copynumber: 6.5 Consensus size: 28
16283465 TTTATTTCAG
16283475 GGTTTAAGGTTTTGGTTTTAGGGTTCGA
1 GGTTTAAGGTTTTGGTTTTAGGGTTCGA
* * *
16283503 GGTTTGAGGTTTTGGTTTTAGCGTTTAGA
1 GGTTTAAGGTTTTGGTTTTAG-GGTTCGA
* * *
16283532 GGATTT-AGGATTTTGATTTTAAGG-TCTGG
1 GG-TTTAAGG-TTTTGGTTTTAGGGTTC-GA
* * *
16283561 GGTTTAAGGTTTTAGTTTTAGGTTTTGAA
1 GGTTTAAGGTTTTGGTTTTAGGGTTCG-A
*
16283590 GGATTT-AGGTATTT-GTTTTAGGGTTTGAA
1 GG-TTTAAGGT-TTTGGTTTTAGGGTTCG-A
* * * *
16283619 GATTTAGGGTTTT-GTTTTAGAGTTTGGA
1 GGTTTAAGGTTTTGGTTTTAG-GGTTCGA
16283647 GAGTTTAAGGTTTT
1 G-GTTTAAGGTTTT
16283661 AAAGTTTAGG
Statistics
Matches: 125, Mismatches: 21, Indels: 23
0.74 0.12 0.14
Matches are distributed among these distances:
28 50 0.40
29 56 0.45
30 19 0.15
ACGTcount: A:0.18, C:0.02, G:0.32, T:0.48
Consensus pattern (28 bp):
GGTTTAAGGTTTTGGTTTTAGGGTTCGA
Found at i:16283585 original size:7 final size:7
Alignment explanation
Indices: 16283475--16283586 Score: 52
Period size: 7 Copynumber: 15.9 Consensus size: 7
16283465 TTTATTTCAG
*
16283475 GGTTTAA
1 GGTTTTA
16283482 GGTTTT-
1 GGTTTTA
16283488 GGTTTTA
1 GGTTTTA
**
16283495 GGGTTCGA
1 -GGTTTTA
*
16283503 GGTTTGA
1 GGTTTTA
16283510 GGTTTT-
1 GGTTTTA
16283516 GGTTTTA
1 GGTTTTA
*
16283523 GCGTTTAGA
1 G-GTTT-TA
*
16283532 GGATTTA
1 GGTTTTA
16283539 GGATTTT-
1 GG-TTTTA
*
16283546 GATTTTAA
1 GGTTTT-A
* **
16283554 GGTCTGG
1 GGTTTTA
*
16283561 GGTTTAA
1 GGTTTTA
16283568 GGTTTTA
1 GGTTTTA
16283575 -GTTTTA
1 GGTTTTA
16283581 GGTTTT
1 GGTTTT
16283587 GAAGGATTTA
Statistics
Matches: 78, Mismatches: 18, Indels: 18
0.68 0.16 0.16
Matches are distributed among these distances:
6 22 0.28
7 36 0.46
8 18 0.23
9 2 0.03
ACGTcount: A:0.16, C:0.03, G:0.32, T:0.49
Consensus pattern (7 bp):
GGTTTTA
Found at i:16283607 original size:29 final size:27
Alignment explanation
Indices: 16283481--16283660 Score: 107
Period size: 28 Copynumber: 6.3 Consensus size: 27
16283471 TCAGGGTTTA
* * *
16283481 AGGTTTTGGTTTTAGGGTTCG-AGGTTT
1 AGGTTTT-GTTTTAGGTTTTGAAGATTT
* *
16283508 GAGGTTTTGGTTTTAGCGTTTAGAGGATTT
1 -AGGTTTT-GTTTTAG-GTTTTGAAGATTT
* * *
16283538 AGGATTTTGATTTTAAGG-TCTG-GGGTTT
1 AGG-TTTTG-TTTT-AGGTTTTGAAGATTT
16283566 AAGGTTTTAGTTTTAGGTTTTGAAGGATTT
1 -AGGTTTT-GTTTTAGGTTTTGAA-GATTT
*
16283596 AGGTATTTGTTTTAGGGTTTGAAGATTT
1 AGGT-TTTGTTTTAGGTTTTGAAGATTT
*
16283624 AGGGTTTTGTTTTAGAG-TTTGGAGAGTTT
1 A-GGTTTTGTTTTAG-GTTTTGAAGA-TTT
16283653 AAGGTTTT
1 -AGGTTTT
16283661 AAAGTTTAGG
Statistics
Matches: 125, Mismatches: 12, Indels: 29
0.75 0.07 0.17
Matches are distributed among these distances:
27 3 0.02
28 54 0.43
29 45 0.36
30 21 0.17
31 2 0.02
ACGTcount: A:0.18, C:0.02, G:0.32, T:0.48
Consensus pattern (27 bp):
AGGTTTTGTTTTAGGTTTTGAAGATTT
Found at i:16283626 original size:15 final size:15
Alignment explanation
Indices: 16283606--16283717 Score: 58
Period size: 15 Copynumber: 7.7 Consensus size: 15
16283596 AGGTATTTGT
16283606 TTTAGGGTTTGAAGA
1 TTTAGGGTTTGAAGA
* *
16283621 TTTAGGGTTT--TGT
1 TTTAGGGTTTGAAGA
* *
16283634 TTTAGAGTTTGGAGA
1 TTTAGGGTTTGAAGA
* *
16283649 GTTTAAGGTTTTAA-A
1 -TTTAGGGTTTGAAGA
16283664 GTTTAGGGTTTG--GA
1 -TTTAGGGTTTGAAGA
* *
16283678 TTTTAGGGTTT-CAGT
1 -TTTAGGGTTTGAAGA
*
16283693 TTTAAGGTTATGAA-A
1 TTTAGGGTT-TGAAGA
16283708 TTTAGGGTTT
1 TTTAGGGTTT
16283718 AGATTTTTTA
Statistics
Matches: 72, Mismatches: 17, Indels: 17
0.68 0.16 0.16
Matches are distributed among these distances:
13 10 0.14
14 20 0.28
15 32 0.44
16 10 0.14
ACGTcount: A:0.22, C:0.01, G:0.29, T:0.47
Consensus pattern (15 bp):
TTTAGGGTTTGAAGA
Found at i:16283630 original size:58 final size:56
Alignment explanation
Indices: 16283481--16283643 Score: 154
Period size: 58 Copynumber: 2.8 Consensus size: 56
16283471 TCAGGGTTTA
* *
16283481 AGGT-TTTGGTTTTAGGGTTCGAGGTTT-GAGGTTTTGGTTTTAGCGTTTAGAGGATTT
1 AGGTATTT-GTTTTAGGGTTTGAGGTTTAG-GGTTTT-GTTTTAGAGTTTAGAGGATTT
* * * * *
16283538 AGG-ATTTTGATTTTAAGGTCTGGGGTTTAAGGTTTTAGTTTTAG-GTTTTGAAGGATTT
1 AGGTA-TTTG-TTTTAGGGTTTGAGGTTTAGGGTTTT-GTTTTAGAGTTTAG-AGGATTT
*
16283596 AGGTATTTGTTTTAGGGTTTGAAGATTTAGGGTTTTGTTTTAGAGTTT
1 AGGTATTTGTTTTAGGGTTTG-AGGTTTAGGGTTTTGTTTTAGAGTTT
16283644 GGAGAGTTTA
Statistics
Matches: 86, Mismatches: 12, Indels: 15
0.76 0.11 0.13
Matches are distributed among these distances:
57 26 0.30
58 59 0.69
59 1 0.01
ACGTcount: A:0.18, C:0.02, G:0.31, T:0.49
Consensus pattern (56 bp):
AGGTATTTGTTTTAGGGTTTGAGGTTTAGGGTTTTGTTTTAGAGTTTAGAGGATTT
Found at i:16283684 original size:14 final size:14
Alignment explanation
Indices: 16283665--16283724 Score: 50
Period size: 14 Copynumber: 4.2 Consensus size: 14
16283655 GGTTTTAAAG
16283665 TTTAGGGTTTGGAT
1 TTTAGGGTTTGGAT
*
16283679 TTTAGGGTTT-CAGT
1 TTTAGGGTTTGGA-T
* * *
16283693 TTTAAGGTTATGAAA
1 TTTAGGGTT-TGGAT
*
16283708 TTTAGGGTTTAGAT
1 TTTAGGGTTTGGAT
16283722 TTT
1 TTT
16283725 TTAATTTTTA
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
13 1 0.03
14 24 0.69
15 9 0.26
16 1 0.03
ACGTcount: A:0.22, C:0.02, G:0.27, T:0.50
Consensus pattern (14 bp):
TTTAGGGTTTGGAT
Found at i:16283712 original size:43 final size:43
Alignment explanation
Indices: 16283604--16283724 Score: 129
Period size: 44 Copynumber: 2.8 Consensus size: 43
16283594 TTAGGTATTT
* * *
16283604 GTTTTAGGGTTTGAAGATTTAGGGTTTTG-TTTTAGAGTTTGGA
1 GTTTTAAGGTTTGAA-ATTTAGGGTTTAGATTTTAGAGTTTGCA
* * * *
16283647 GAGTTTAAGGTTTTAAAGTTTAGGGTTTGGATTTTAGGGTTT-CA
1 G-TTTTAAGGTTTGAAA-TTTAGGGTTTAGATTTTAGAGTTTGCA
16283691 GTTTTAAGGTTATGAAATTTAGGGTTTAGATTTT
1 GTTTTAAGGTT-TGAAATTTAGGGTTTAGATTTT
16283725 TTAATTTTTA
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
43 27 0.42
44 28 0.43
45 10 0.15
ACGTcount: A:0.22, C:0.01, G:0.29, T:0.48
Consensus pattern (43 bp):
GTTTTAAGGTTTGAAATTTAGGGTTTAGATTTTAGAGTTTGCA
Found at i:16283858 original size:3 final size:3
Alignment explanation
Indices: 16283852--16283917 Score: 107
Period size: 3 Copynumber: 22.3 Consensus size: 3
16283842 TTATAAAAAT
16283852 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
16283899 TCA TTA TTA ATA TTA TTA T
1 TTA TTA TTA TTA TTA TTA T
16283918 GCTTTTTTTT
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
2 2 0.03
3 56 0.97
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:16284035 original size:21 final size:21
Alignment explanation
Indices: 16284011--16284054 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
16284001 AATAGAAATA
** *
16284011 TTATTTTTCTATTCTTATTAT
1 TTATTTTTAGATTATTATTAT
16284032 TTATTTTTAGATTATTATTAT
1 TTATTTTTAGATTATTATTAT
16284053 TT
1 TT
16284055 TTTAAGCATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.70
Consensus pattern (21 bp):
TTATTTTTAGATTATTATTAT
Found at i:16284052 original size:17 final size:18
Alignment explanation
Indices: 16284025--16284086 Score: 74
Period size: 20 Copynumber: 3.4 Consensus size: 18
16284015 TTTTCTATTC
16284025 TTATTATT-TATTTTTAGA
1 TTATTATTAT-TTTTTAGA
16284043 TTATTATTATTTTTTAAGCA
1 TTATTATTATTTTTT-AG-A
*
16284063 TTATTAATATTTTTTAG-
1 TTATTATTATTTTTTAGA
16284080 TTATTAT
1 TTATTAT
16284087 CCTACTTGTT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
17 6 0.15
18 13 0.33
19 5 0.13
20 15 0.38
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.65
Consensus pattern (18 bp):
TTATTATTATTTTTTAGA
Found at i:16287536 original size:6 final size:6
Alignment explanation
Indices: 16287525--16287559 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
16287515 CCAACAAATA
16287525 TTTTAT TTTTAT TTTTA- TTTTAT TTTTAT TCTTTA
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT T-TTTA
16287560 CTAAAAACTA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.19
6 18 0.67
7 4 0.15
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTTAT
Found at i:16287539 original size:11 final size:11
Alignment explanation
Indices: 16287525--16287554 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
16287515 CCAACAAATA
16287525 TTTTATTTTTAT
1 TTTTA-TTTTAT
16287537 TTTTATTTTAT
1 TTTTATTTTAT
16287548 TTTTATT
1 TTTTATT
16287555 CTTTACTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTTATTTTAT
Found at i:16287545 original size:17 final size:18
Alignment explanation
Indices: 16287523--16287559 Score: 67
Period size: 17 Copynumber: 2.1 Consensus size: 18
16287513 CCCCAACAAA
16287523 TATTTTATTTTTATT-TT
1 TATTTTATTTTTATTCTT
16287540 TATTTTATTTTTATTCTT
1 TATTTTATTTTTATTCTT
16287558 TA
1 TA
16287560 CTAAAAACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (18 bp):
TATTTTATTTTTATTCTT
Found at i:16288038 original size:4 final size:4
Alignment explanation
Indices: 16288029--16288068 Score: 53
Period size: 4 Copynumber: 9.8 Consensus size: 4
16288019 TTATTTTATT
**
16288029 TTTA TTTA TTTA ACTA TTTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTTA TTT
16288069 GATTATCTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
4 29 0.94
5 2 0.06
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (4 bp):
TTTA
Found at i:16288067 original size:21 final size:22
Alignment explanation
Indices: 16288018--16288068 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 22
16288008 CTGACTTCAG
16288018 TTTATTTTATTTTTATTTATTTA
1 TTTATTTTA-TTTTATTTATTTA
**
16288041 ACTATTTTA-TTTATTTATTTA
1 TTTATTTTATTTTATTTATTTA
16288062 TTTATTT
1 TTTATTT
16288069 GATTATCTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 17 0.71
23 7 0.29
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.75
Consensus pattern (22 bp):
TTTATTTTATTTTATTTATTTA
Found at i:16292620 original size:20 final size:21
Alignment explanation
Indices: 16292597--16292635 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
16292587 GATGAAAAAT
16292597 AAAAAAAGAGAAA-AAAAACA
1 AAAAAAAGAGAAAGAAAAACA
16292617 AAAAAAAGAGAAAGAAAAA
1 AAAAAAAGAGAAAGAAAAA
16292636 AAATGGAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.85, C:0.03, G:0.13, T:0.00
Consensus pattern (21 bp):
AAAAAAAGAGAAAGAAAAACA
Found at i:16294379 original size:34 final size:34
Alignment explanation
Indices: 16294313--16294379 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
16294303 ATTGAATTTC
* * *
16294313 TTGTGAATCTTAAATTCTTACGAACTTTAAATTA
1 TTGTGAATCTTAAATTCTTAAGAACCTAAAATTA
*
16294347 TTGTGAA-CTTGAAGTTCTTAAGAACCTAAAATT
1 TTGTGAATCTT-AAATTCTTAAGAACCTAAAATT
16294380 CTATTGAACC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 3 0.11
34 25 0.89
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (34 bp):
TTGTGAATCTTAAATTCTTAAGAACCTAAAATTA
Found at i:16294601 original size:17 final size:17
Alignment explanation
Indices: 16294552--16294603 Score: 59
Period size: 17 Copynumber: 3.0 Consensus size: 17
16294542 TTTAAAATTC
* *
16294552 TTGCAAATTTGGAACTT
1 TTGCAAATCTGGAACCT
* *
16294569 TTGTAAAACTTGGAACCT
1 TTGCAAATC-TGGAACCT
16294587 TTGCAAATCTGGAACCT
1 TTGCAAATCTGGAACCT
16294604 CTAAAAAATT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
17 14 0.50
18 14 0.50
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (17 bp):
TTGCAAATCTGGAACCT
Found at i:16295053 original size:44 final size:43
Alignment explanation
Indices: 16294985--16295358 Score: 364
Period size: 43 Copynumber: 8.7 Consensus size: 43
16294975 TATTTAAAGT
*
16294985 TTTTAAAGTTGTTTAACCTCTGTATAAAAGAGCCCATTTCTTAA
1 TTTTAAAGTTGTTTAGCCTCTGTATAAAAGAGCCCATTTCTT-A
* * * *
16295029 TTTTAAAGTTGTTTAGCCTTTGTAT-AGAGAAGCCTATTTCCTA
1 TTTTAAAGTTGTTTAGCCTCTGTATAAAAG-AGCCCATTTCTTA
* * *
16295072 TTTTAAAGTTGTTTAACAC-CTGTATCAAAGAGCCCATTTCCTA
1 TTTTAAAGTTGTTTAGC-CTCTGTATAAAAGAGCCCATTTCTTA
* * * *
16295115 TTTTAAAGTTCTTTAGCCTCTATATAGAGGAGCCCA-TTCTCTA
1 TTTTAAAGTTGTTTAGCCTCTGTATAAAAGAGCCCATTTCT-TA
* * *
16295158 TTTTAAAGTTGTTTTAGCCTCTATATGGATA-AGCCCATTTCTTAA
1 TTTTAAAGTTG-TTTAGCCTCTGTAT-AAAAGAGCCCATTTCTT-A
*** * * * ** *
16295203 TTTTAAAGCCATTTAGCCTTTATATAGAAGAGCATATTTCCTA
1 TTTTAAAGTTGTTTAGCCTCTGTATAAAAGAGCCCATTTCTTA
*
16295246 TTTTAAAGTTGTTTAGCCTCTGTATAAAGGAG-CCATTTTCTTA
1 TTTTAAAGTTGTTTAGCCTCTGTATAAAAGAGCCCA-TTTCTTA
* * *
16295289 TTTTAAAGTTGTTTAACCTCTGTATAGAAGAGCTCATTTCTTA
1 TTTTAAAGTTGTTTAGCCTCTGTATAAAAGAGCCCATTTCTTA
* *
16295332 ATTTAAATTTGTTT-GCCTCTGTATAAA
1 TTTTAAAGTTGTTTAGCCTCTGTATAAA
16295359 GGAGTTTAAT
Statistics
Matches: 269, Mismatches: 49, Indels: 26
0.78 0.14 0.08
Matches are distributed among these distances:
42 16 0.06
43 158 0.59
44 82 0.30
45 13 0.05
ACGTcount: A:0.28, C:0.16, G:0.13, T:0.42
Consensus pattern (43 bp):
TTTTAAAGTTGTTTAGCCTCTGTATAAAAGAGCCCATTTCTTA
Found at i:16296161 original size:17 final size:17
Alignment explanation
Indices: 16296141--16296176 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
16296131 ATTATTTTAT
16296141 TTTTATTTATTTAACTA
1 TTTTATTTATTTAACTA
*
16296158 TTTTATTTATTTATCTA
1 TTTTATTTATTTAACTA
16296175 TT
1 TT
16296177 ATTTTTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTTATTTATTTAACTA
Found at i:16296182 original size:21 final size:18
Alignment explanation
Indices: 16296137--16296170 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
16296127 AGGTATTATT
16296137 TTATTTTTATTTATTTAA
1 TTATTTTTATTTATTTAA
*
16296155 CTA-TTTTATTTATTTA
1 TTATTTTTATTTATTTA
16296171 TCTATTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (18 bp):
TTATTTTTATTTATTTAA
Found at i:16296215 original size:16 final size:16
Alignment explanation
Indices: 16296184--16296217 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
16296174 ATTATTTTTT
**
16296184 AAATATATTTTTATAA
1 AAATATATTTAAATAA
16296200 AAATATATTTAAATAA
1 AAATATATTTAAATAA
16296216 AA
1 AA
16296218 GCCTTACCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AAATATATTTAAATAA
Found at i:16303921 original size:12 final size:13
Alignment explanation
Indices: 16303900--16303932 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
16303890 TATAGATCAT
16303900 TCAAAACATT-CG
1 TCAAAACATTACG
*
16303912 TCAAATCATTACG
1 TCAAAACATTACG
16303925 TCAAAACA
1 TCAAAACA
16303933 ATTCAAAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 9 0.50
13 9 0.50
ACGTcount: A:0.45, C:0.24, G:0.06, T:0.24
Consensus pattern (13 bp):
TCAAAACATTACG
Found at i:16308321 original size:10 final size:10
Alignment explanation
Indices: 16308306--16308332 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
16308296 TCAATCTTTA
16308306 AAATCATCAT
1 AAATCATCAT
16308316 AAATCATCAT
1 AAATCATCAT
16308326 AAATCAT
1 AAATCAT
16308333 TAGTTACATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.52, C:0.19, G:0.00, T:0.30
Consensus pattern (10 bp):
AAATCATCAT
Found at i:16319046 original size:3 final size:3
Alignment explanation
Indices: 16319038--16319065 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
16319028 CAAAAATTTC
16319038 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
16319066 GAGATAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:16320034 original size:22 final size:21
Alignment explanation
Indices: 16319998--16320057 Score: 50
Period size: 21 Copynumber: 2.9 Consensus size: 21
16319988 TCTACTTTTT
* * *
16319998 AAAAAGATAAAA-AAAAACGA
1 AAAAAAATAAAACAAAAAAGC
** *
16320018 AAAAAATGAAAAGAAAAAAGC
1 AAAAAAATAAAACAAAAAAGC
*
16320039 AAAGAAATAAAACAAAAAA
1 AAAAAAATAAAACAAAAAA
16320058 AGACTTCGTA
Statistics
Matches: 30, Mismatches: 9, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
20 9 0.30
21 21 0.70
ACGTcount: A:0.80, C:0.05, G:0.10, T:0.05
Consensus pattern (21 bp):
AAAAAAATAAAACAAAAAAGC
Found at i:16321016 original size:13 final size:14
Alignment explanation
Indices: 16320974--16321017 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 14
16320964 ATTAAATATT
16320974 AAAAAAATTAA-TAG
1 AAAAAAA-TAAGTAG
16320988 AAAAAAA-AAG-AG
1 AAAAAAATAAGTAG
16321000 AAAAAAATAAGTA-
1 AAAAAAATAAGTAG
16321013 AAAAA
1 AAAAA
16321018 TCAAATGACT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
12 11 0.41
13 8 0.30
14 8 0.30
ACGTcount: A:0.80, C:0.00, G:0.09, T:0.11
Consensus pattern (14 bp):
AAAAAAATAAGTAG
Found at i:16323311 original size:862 final size:853
Alignment explanation
Indices: 16321589--16325334 Score: 3054
Period size: 862 Copynumber: 4.4 Consensus size: 853
16321579 AGCATTTTAT
** * *** * * *
16321589 AAATTCATCCAATAGTCTAAAATTCATTTTTGTTTTTGTTTCAATGAACACACTTTCA-CCTTGG
1 AAATTCATCCAAGGGTCCAAAATTCACCCTTGTTTTTGTTTCAAGGAGCAAACTTTCACCCTTGG
* * * * * * * * *
16321653 ATCAAGATTCTCAATGTGATCTAATC-GTCCAAATTGTTTATTGCCAAATATGTGATTTTTAAAA
66 ATCAAGATTCCCAATGTGATCCAA-CGGTCTAGATTGTTTACTACAAAAGATATGATTTTTAAAA
* * * * *
16321717 CTCTTGGATTAATTTAAAAGATCATTTTGCCCCTAATACAAAATTTTT-GATCTTTAGGCCATTT
130 CT-TT-GATCAAGTAAAAAGACCATTTTG-CCCTAATACAAAGTTTTTAG-TCTTTAGGCCATTT
* * * * * *
16321781 TCATAGAAATCGATGCTCTCATATTCATTTTTATAGTTTTAAAGCACGAAAAATCATAAAATAAT
191 TCCTAGAAATCGATGCTCTCATGTTCATTTTTGTAATTTTAAAGCACCAAAAATCATGAAATAAT
* * * * * * * *
16321846 ATGAAACTAAATTTTGAAAAGTTTC-ATGAAAAT-CAAGCCTAAAAAATGTCAAATTACAAAATT
256 ATGAAAATAAAATTTGGAAAGTTTCGA-GAAAATCCGA-CCTTAAGAAGGTCAAATTA-GAAATT
** * * * * * * * * * * *
16321909 ACTTTTAAG-GATATTTTACTAATATCACACATCTCGAGATGTTG-CTATGGTTTTGAATGCTCT
318 AC-CCTAAGAGGTATTTT-GTAATTTCACACCTATCAAGGTGCTGTC-ATGATTTTGAATGCACC
* * * ** * *
16321972 AAAAATCATCAAATATTTTAAAATCATGTTCT-AGAAAGTTTCACAAAAAACCAACCTTAGG-AC
380 AAAAATCATCAAATATTTTAAAAGCATGATCTGA-AAAGTTTTATGAAAAACCAACC-TCGGAAA
* ** * * *
16322035 GGTTAAATTATAAAATTACCTTAAAGGGTATTTTAGTAATTTTA-TACTATT-TAAGGTGCAATC
443 GGTCAAATTACGAAATTACCTTTAAGGGTATTTT-G-AAATTTACT-C-ATTCTAAGATG--ATC
* * *
16322098 AA-AGTTTTCAAAATTCT-AAAAT--TCAAATAATATCAAACCAT-AACTTAGAGTGTTTCATGA
502 AAGA-TTTTCAAAATTCTAAAAATCATCAAATAATATCAAACCATGATC-TGGAGCGTTT--TGA
* * *
16322158 AATTTTGACCTTAGG-AATGTCAAATTATGAAAATA-CC------------TTGTAATTTCACAC
563 AA-TTTCAACTT-GGAAAGGTCAAATTATGAAAATATCCTTAAAGGTATTTTTGTAATTTCACAC
* * *
16322209 --CTCCAA---TGAT-TAGGTTTTTAATGCATCAAAAGTCC-TAAAAACACAATTCAATTATGAT
626 ATCTCAAAGTGTGATATAGGTTTTTAATGCATAAAAAATCCTTAAAAA-A-AATTCAATTATGAT
* * * * * * *
16322267 ATGAAAATTTTCCTAAAAATTCAACTTCGAGAAA-GCAAAATTACGAAAATA-CCTGTAAAGGTT
689 TTGAAAATTTTCATGAAAATTCAACTTC-AAAAAGGCCAAATTATGAAAATATCCT-TAAAGGGT
* * *
16322330 ATTTTGATAATTTTACCTTTCTCAAAGTGCAATCAAGGTTTTTGGTGCTTCAAAATCACAAATTT
752 ATTTTGGTAATTTTACCCTTCTCAAAGTGCAATCAAGGTTTTTAGTGCTTCAAAATCACAAATTT
* * *
16322395 CAATCTTAATCCATATTGGTTCCAATTTTATTGTCAC
817 CAATCTTAATCCACATTGGTTTCAATTTGATTGTCAC
* * ** * *
16322432 AAATTCATTCAAGGGTCCAAATTTCATTCTTGTTTTTGTTTCAAGGAGCAAAATTTCACCCTTTG
1 AAATTCATCCAAGGGTCCAAAATTCACCCTTGTTTTTGTTTCAAGGAGCAAACTTTCACCCTTGG
* * ** * * * *
16322497 ATCAAAATTTCCAATGTGATCCAACAATCTAGATTGTTTACTACCAAAGATTTTATTTTTAAAGC
66 ATCAAGATTCCCAATGTGATCCAACGGTCTAGATTGTTTACTACAAAAGATATGATTTTTAAAAC
* * * * * * *
16322562 TTAAAGCATCAAGTAAAAAGACCATTTTGCCTCTAATATAAAGTTTTCAGTATTTGGGCTACTTT
131 TT--TG-ATCAAGTAAAAAGACCATTTTGCC-CTAATACAAAGTTTTTAGTCTTTAGGCCATTTT
* * * *
16322627 CGTAGAAATCAATGCTCTCATATTCATTTTTGTAATTTTAAAGCA-CAAAAA-AATGAAATAATA
192 CCTAGAAATCGATGCTCTCATGTTCATTTTTGTAATTTTAAAGCACCAAAAATCATGAAATAATA
* * * * * * *
16322690 TGGAACTAAAATTTGGAAAGTGTCGAGAAAATCGGACCTCAAGATGGTCAAATTATGAAATTACT
257 TGAAAATAAAATTTGGAAAGTTTCGAGAAAATCCGACCTTAAGAAGGTCAAATTA-GAAATTACC
* * * *
16322755 CTTAGAGGTATTTTGATAATTTCATACCTCTCAAGGTGCTGTCATGATTTTGAATGCACCGAAAA
321 CTAAGAGGTATTTTG-TAATTTCACACCTATCAAGGTGCTGTCATGATTTTGAATGCACCAAAAA
* * * *
16322820 TCATCAAATATTTTAAAAGCATGATCTAAAAATTTTTGTGAAAAACCAAACCT-GGAAAGGTGAA
385 TCATCAAATATTTTAAAAGCATGATCTGAAAAGTTTTATGAAAAACC-AACCTCGGAAAGGTCAA
* * * *
16322884 TTTATGAAATTACTCTTTAAGAGTATTTTGAAAATTTCACTCATTCTAAGATAAGATCAAGGTTT
449 ATTACGAAATTAC-CTTTAAGGGTATTTTG-AAATTT-ACTCATTCTAAGAT--GATCAAGATTT
** * *
16322949 TCAAAATTCTAAATTTCATCAAATAATATCAATCCATGATCTGGAGGGTTTCATGAAATTTCAAC
509 TCAAAATTCTAAAAATCATCAAATAATATCAAACCATGATCTGGAGCGTTT--TGAAATTTCAAC
* * * * *
16323014 TTGGAAAAGTCAAATTACGATAATATCCTTAAAGGTATTTTTGTAATTTCACACCTTTCAAAGTG
572 TTGGAAAGGTCAAATTATGAAAATATCCTTAAAGGTATTTTTGTAATTTCACACATCTCAAAGTG
16323079 TGATATAGGTTTTTAATGCATAAAAAATCCTTAAAAAAAA-TCAATTATGATTTGAAAA-TTTCA
637 TGATATAGGTTTTTAATGCATAAAAAATCCTTAAAAAAAATTCAATTATGATTTGAAAATTTTCA
* * *
16323142 TGAAAGTTCAACTTCAAAATGGCCCAATTATGAAAATATCCTTAAAGGGTATTTTGGTAATTTTA
702 TGAAAATTCAACTTCAAAAAGGCCAAATTATGAAAATATCCTTAAAGGGTATTTTGGTAATTTTA
* * * * * *
16323207 CCCTACTCAAAGTGCAATCAAAGCTTTTAATGCTTCAAAATCACAAATTTCATTTTTAATCCACA
767 CCCTTCTCAAAGTGCAATCAAGGTTTTTAGTGCTTCAAAATCACAAATTTCAATCTTAATCCACA
16323272 TTGGTTTCAATTTGATTGTCAC
832 TTGGTTTCAATTTGATTGTCAC
* * *
16323294 AAATTCATCCAAGGGTCCAAAATTCACCTTTATTTTTGTTTCAATGAGCAAACTTTCACCCTTGG
1 AAATTCATCCAAGGGTCCAAAATTCACCCTTGTTTTTGTTTCAAGGAGCAAACTTTCACCCTTGG
* * *
16323359 ATCAAGATACCCAATGTGATCCAACGGTCCAGATTGTTTACTGCTAAAA-ATATGATTTTTAAAA
66 ATCAAGATTCCCAATGTGATCCAACGGTCTAGATTGTTTACTAC-AAAAGATATGATTTTT-AAA
* * * * * *
16323423 ATCTTTGATTAAGTGAAAAGACCAGTTTGTCCATAATACAATGTTTTTAGTCTTTAGCCCATTTT
129 A-CTTTGATCAAGTAAAAAGACCATTTTG-CCCTAATACAAAGTTTTTAGTCTTTAGGCCATTTT
* * * * * * * *
16323488 CTTAGAAAGTCGACG-T-TCATGTGTTCATTTTTGTGATTTTAAACCATCAAAAATCTTAAAAGA
192 CCTAGAAA-TCGATGCTCTCA--TGTTCATTTTTGTAATTTTAAAGCACCAAAAATCATGAAATA
* * *
16323551 ACATGAAAAT-AAATTTGCAAAGTTTC-ATGAAAATCCAACCTTAAGAAGG-CTAAATTACG-AA
254 ATATGAAAATAAAATTTGGAAAGTTTCGA-GAAAATCCGACCTTAAGAAGGTC-AAATTA-GAAA
* * * * * *
16323612 TTACCCATAAGGGGTACTTTTGTAATTTCACACCTTTCGAGGTGTTG-CATTGGTTTTAAATGCA
316 TTACCC-TAAGAGGTA-TTTTGTAATTTCACACCTATCAAGGTGCTGTCA-TGATTTTGAATGCA
* * * * *
16323676 CCAAAAATAATCAAATATTTTAAAATCATGATATGAAAAGTTTTATGAAAAATCAACCTCGAAAA
378 CCAAAAATCATCAAATATTTTAAAAGCATGATCTGAAAAGTTTTATGAAAAACCAACCTCGGAAA
* * * * *
16323741 AGTTAAATTACGAAATTACCTTTAAGGGATATTTTGATAATTTTACACCTTCCAAGATGCGATCA
443 GGTCAAATTACGAAATTACCTTTAAGGG-TATTTTGA-AA-TTTACTCATTCTAAGAT--GATCA
* * * *
16323806 ACATTTTCAAAA-TCTAAAACTCATCAAATAATATTAAACCAT-ATCTGGAGCATTTTTGCGAAA
503 AGATTTTCAAAATTCTAAAAATCATCAAATAATATCAAACCATGATCTGGAGC-GTTTT--GAAA
* * * * * * *
16323869 TTCTGACCTTGGGATGGTGAAATTATGAAAATAT-CTCTAATGGTATTTTTGTAATTTAACACAT
565 TT-TCAACTTGGAAAGGTCAAATTATGAAAATATCCT-TAAAGGTATTTTTGTAATTTCACACAT
* * * *
16323933 CCCTATA-TGTGATCTAGGTTTTTAA--CATAACAAAAATCCTAAAAAAAAAAATTCAATTATGA
628 CTC-AAAGTGTGATATAGGTTTTTAATGCAT-A-AAAAATCCT--TAAAAAAAATTCAATTATGA
* * * * * *
16323995 TCTAAAAATTTTCACT-AAAATTCAACTTCAAAAAGGTCAAATTATGAAAAT-TCTCCTAAAAGA
688 TTTGAAAATTTTCA-TGAAAATTCAACTTCAAAAAGGCCAAATTATGAAAATATC-CTTAAAGGG
* * * *
16324058 TATTTTGGTAATTTTACTCTTCTTGAAA-TGCTAT-ATGGGTTTTTAGTGCTT-AAAATCACAAA
751 TATTTTGGTAATTTTACCCTTC-TCAAAGTGCAATCA-AGGTTTTTAGTGCTTCAAAATCACAAA
* * *
16324120 TTTTAA-CTTTAATCCACATTGGTTTCAATTTGATTGTTAT
814 TTTCAATC-TTAATCCACATTGGTTTCAATTTGATTGTCAC
** * *
16324160 AAATTCATTTAAGGGTCCAAAATTCACCCTCGTTTTTGTTTCAAGGAGCAAACTTTCACCCATGG
1 AAATTCATCCAAGGGTCCAAAATTCACCCTTGTTTTTGTTTCAAGGAGCAAACTTTCACCCTTGG
* * * *
16324225 ATCAAGATTCCCAATATGATCCAATGGTCTTGATTGTTTACTACAAAAGATGTGATTTTTAAAAC
66 ATCAAGATTCCCAATGTGATCCAACGGTCTAGATTGTTTACTACAAAAGATATGATTTTTAAAAC
* *** * *
16324290 TCTTGGATCAAGTAAAATGATTGTTTTACCCTTAATACAAAGTTTTTGGTCTTTAGGCCATTTTC
131 T-TT-GATCAAGTAAAAAGACCATTTTGCCC-TAATACAAAGTTTTTAGTCTTTAGGCCATTTTC
* * *
16324355 CTAAAAATCGATGCTCTCATGTTCATTTTTTTTTATTTTAAAGCACCAAAAATCATGAAATAATA
193 CTAGAAATCGATGCTCTCATGTTCA-TTTTTGTAATTTTAAAGCACCAAAAATCATGAAATAATA
* * * ** * ** * *
16324420 TGAAATTAAATTTTGGAAAGTTTTCGTGAAAATATGACTTTGGGAAGATCAAATTACAAATTTAC
257 TGAAAATAAAATTTGGAAAG-TTTCGAGAAAATCCGACCTTAAGAAGGTCAAATTAGAAA-TTA-
* * * ** * **
16324485 CCCTAAAAGGTAGTTTGCTAATTTCACACCTATCGAA-ATGCTGTCATTTTTTTGACTGCATAAA
319 CCCTAAGAGGTATTTTG-TAATTTCACACCTATC-AAGGTGCTGTCATGATTTTGAATGCACCAA
* * * * ** *
16324549 AAATCATCAAATACTTTAAAAGTATGATCTGAAAAGTTTCATGAAAAACCGACCTCGG-GTGATC
382 AAATCATCAAATATTTTAAAAGCATGATCTGAAAAGTTTTATGAAAAACCAACCTCGGAAAGGTC
* * * *
16324613 AAATTACAAAATTACCCTTAAGGGGTATTTTG-------CTAATT-T-A-ATG-TCAAGATATTC
447 AAATTACGAAATTACCTTTAA-GGGTATTTTGAAATTTACTCATTCTAAGATGATCAAGATTTTC
* * * * *
16324667 AAAATTCTAAAAATCATTAAATAATATCAAACCATGATTTGAAGTGTTTTGCAAAATTTCGACTT
511 AAAATTCTAAAAATCATCAAATAATATCAAACCATGATCTGGAGCGTTTTG--AAATTTCAAC-T
* * * ** * * *
16324732 TTGAAAGGCCAAATTATGAAAATAACCTT-AAGAAAATTTTATAATTTCACACATCTCAATGTGT
573 TGGAAAGGTCAAATTATGAAAATATCCTTAAAGGTATTTTTGTAATTTCACACATCTCAAAGTGT
* * * * *
16324796 GATATGGGTATTTAATGCA-ACAAAATTCTTCAAAAAAATTTCAATTATGATTTAGAAAA-TTTC
638 GATATAGGTTTTTAATGCATAAAAAATCCTT-AAAAAAAATTCAATTATGATTT-GAAAATTTTC
* * * * * *
16324859 AAGAAAGTTCAACTTCAAAAAAGTCAAATTACT-AAAATACCCTTTAAAGGGTATTTTGGTAACT
701 ATGAAAATTCAACTTCAAAAAGGCCAAATTA-TGAAAATATCC-TTAAAGGGTATTTTGGTAATT
* * ** * * * * * *
16324923 TTATCATTCTCGGAGTGTAGTCAGGGTTTTTAGTGCTTCAAATTCATAAATTTCAATCTCAATCC
764 TTACCCTTCTCAAAGTGCAATCAAGGTTTTTAGTGCTTCAAAATCACAAATTTCAATCTTAATCC
* *
16324988 ACATTGGTTTCGATTTGATTATCAC
829 ACATTGGTTTCAATTTGATTGTCAC
*
16325013 AAATTCATCAAAGGGTCCAAAATTCACCCTTGTTTTTGTTTCAAGGAGCAAACTTTCACCCTTGG
1 AAATTCATCCAAGGGTCCAAAATTCACCCTTGTTTTTGTTTCAAGGAGCAAACTTTCACCCTTGG
** * * * * ** * * * * *
16325078 ATCAAGATTCCCAACATGATCTAATGGTCTAGATTATTCACT-GTAGATATGTGAATTTTAACAC
66 ATCAAGATTCCCAATGTGATCCAACGGTCTAGATTGTTTACTACAAAAGATATGATTTTTAAAAC
* * * *
16325142 TCTTGGATTAAGTGAAAATGACTATTTTGCCCCTTAATACAAAGTTTTTGGTCTTTAGGCCATTT
131 T-TT-GATCAAGT-AAAAAGACCATTTTG-CCC-TAATACAAAGTTTTTAGTCTTTAGGCCATTT
* * ** * ** * *
16325207 TCTTAGAAATCAATATTCTCATATTGTTTTTTATAATTTTAAAGCACCAAAAATCATCAAATAAT
191 TCCTAGAAATCGATGCTCTCATGTTCATTTTTGTAATTTTAAAGCACCAAAAATCATGAAATAAT
* * * * * *
16325272 ATGAAACTAAAA-TTAGAAAGTTTCAAGAAAATCAGACCTCAAAAAGGTCAAA-T-GAAATTACC
256 ATGAAAATAAAATTTGGAAAGTTTCGAGAAAATCCGACCTTAAGAAGGTCAAATTAGAAATTACC
16325334 C
321 C
16325335 CAAGGTGCAA
Statistics
Matches: 2343, Mismatches: 437, Indels: 242
0.78 0.14 0.08
Matches are distributed among these distances:
842 6 0.00
843 217 0.09
844 110 0.05
845 89 0.04
846 26 0.01
847 38 0.02
848 5 0.00
849 3 0.00
850 1 0.00
851 81 0.03
852 91 0.04
853 249 0.11
854 113 0.05
855 10 0.00
856 2 0.00
857 1 0.00
859 17 0.01
860 4 0.00
861 69 0.03
862 322 0.14
863 284 0.12
864 33 0.01
865 55 0.02
866 264 0.11
867 91 0.04
868 62 0.03
869 94 0.04
870 6 0.00
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.35
Consensus pattern (853 bp):
AAATTCATCCAAGGGTCCAAAATTCACCCTTGTTTTTGTTTCAAGGAGCAAACTTTCACCCTTGG
ATCAAGATTCCCAATGTGATCCAACGGTCTAGATTGTTTACTACAAAAGATATGATTTTTAAAAC
TTTGATCAAGTAAAAAGACCATTTTGCCCTAATACAAAGTTTTTAGTCTTTAGGCCATTTTCCTA
GAAATCGATGCTCTCATGTTCATTTTTGTAATTTTAAAGCACCAAAAATCATGAAATAATATGAA
AATAAAATTTGGAAAGTTTCGAGAAAATCCGACCTTAAGAAGGTCAAATTAGAAATTACCCTAAG
AGGTATTTTGTAATTTCACACCTATCAAGGTGCTGTCATGATTTTGAATGCACCAAAAATCATCA
AATATTTTAAAAGCATGATCTGAAAAGTTTTATGAAAAACCAACCTCGGAAAGGTCAAATTACGA
AATTACCTTTAAGGGTATTTTGAAATTTACTCATTCTAAGATGATCAAGATTTTCAAAATTCTAA
AAATCATCAAATAATATCAAACCATGATCTGGAGCGTTTTGAAATTTCAACTTGGAAAGGTCAAA
TTATGAAAATATCCTTAAAGGTATTTTTGTAATTTCACACATCTCAAAGTGTGATATAGGTTTTT
AATGCATAAAAAATCCTTAAAAAAAATTCAATTATGATTTGAAAATTTTCATGAAAATTCAACTT
CAAAAAGGCCAAATTATGAAAATATCCTTAAAGGGTATTTTGGTAATTTTACCCTTCTCAAAGTG
CAATCAAGGTTTTTAGTGCTTCAAAATCACAAATTTCAATCTTAATCCACATTGGTTTCAATTTG
ATTGTCAC
Found at i:16330131 original size:861 final size:853
Alignment explanation
Indices: 16328646--16331138 Score: 2195
Period size: 861 Copynumber: 2.9 Consensus size: 853
16328636 CATACCTTTT
* * * * * * * *
16328646 AAGGTACAATTAAGGTTTTCGAAATTCTAAAAATAATCAAATAATATCAAACCATGATCTGGAGC
1 AAGGTCCAATCAAGGTTTTCAAAATTCTAAAAATCATAAAATAATATCAAACCATGATATAGAAC
* * * * *
16328711 ATTTCACAAAATTTCAACCATAAGAAGGTCAAATTATGAAAATACATC-AAAGGATATTTTTATA
66 ATTTCATAAAATTTCAACCCTGAGAAGGTCAAATTATAAAAATACACCTAAAGG-TATTTTTATA
* * ** * * * * ** * ** *
16328775 ATTTCACACC-TCTTGAGGTGTGATATGGGTTTTTAACGCGTAAAAAATCCT-TTAAAAAATTCA
130 ATTTAATACCTTC-CAAGATATGATCTGAGTTTTTAATACATAAAAAATCCTAAAAAAAAAATCA
* * * * * * * * * * *
16328838 ATTATGA-TCTAGAAATTCTCAC-AAAAGCTC-GATTTCATGAAGGCAAAATTATGAAAACA-AA
194 ATTATAAGT-AAAAAATTTTTACGAAAAG-TCAAATTTGA-GAAAGCCAAATTA-CAAAA-ATAC
* *** ** * ***** *
16328899 CCT-AAAGGAAGTTTTGGTAATTTTACCCCTCTT-AAAGGGCAATCAAGGTTTTTGGTGCTTAAA
254 CCTAAAAGGTA-TTTTCACAATTTTA-CCCT-TTCAAAATGCAATCAAGGCTTTTAAAAATTCAA
** * * * * * *
16328962 AATCACTAAGTTTCAATTTTAATCCACATTGGTT-TTAATTTGATTGTCACAAATTCATACAAGA
316 AAT-AAAAAATTTCAATCTTAATCCACATTGGTTCCTAATTTAATTGTCACAAATTCATCCAAGG
* * * * *
16329026 GTCTAAAATTCACCTTTGTTTTTGTTTCAAGGAGCAAACTTCAACCTTGAATTAAGATTCCCAAT
380 GTCCAAAATTCACC-AT-TTTTTGTTTCAAGGAGCAAATTTCACCCTTG-ATCAAGATTCCCAAT
* * * * * *
16329091 GCGATTCAATAGACTAGATTATTTACTGTCAAAGATGTGATTTTTAAAGCTCTTGGATCAAGTGA
442 GCGATCCAATGGTCTAGATTGTTTATTGACAAAGATGTGATTTTTAAAGCTCTTGGATCAAGTG-
* * * * * *
16329156 AAAACCCT-TTTACCTCAAATACAAAGTTTTCAATCTTTAGGCCATTTTCTTGAAAATCGATGCT
506 AAAACACTATTTACCTCTAATACAAAGTTTTCGATCTTTAGACCATTTTCTTGGAAATCAATGCT
* * * *
16329220 CTCGTGTTCATTTTTGTGATTTTAAAACATCC-AAAATCATGAAATAATATGGAACTAAGATATG
571 -TTGTGTTCATTTTTGTGATTTTAAAGCA-CCAAAAATCATGAAATAATATGAAACTAA-ATCTG
16329284 GAATGTTTTGTGAAAATCTGACCTCAAAAAGGATAAATTACGAAATTACCTTTAAGGGATATTTT
633 GAA-GTTTTGTGAAAATCTGACCTCAAAAAGG-TAAATTACGAAATTACCTTTAAGGG-TATTTT
* ** *
16329349 TGTAATTTCACACTCCTAAGGTGTTGTTATGGTTTTGAATGCATC-AAAAATCATCAAATATTTT
695 GGTAATTTCACACTCCTAAGGTGTTGCCATGGTTTTAAATGCA-CAAAAAATCATCAAATATTTT
* * * * * * * *
16329413 AAACACATGATCTATATAGTTTCACTAAAAATCAATCTCAAGAAA-CTCAAGTGACA-AAATTA-
759 AAA-ACATAATCTAGAAAATTTCACAAAAAAGCAA-CTCAAGAAAGATCAAATGA-AGAAATTAC
* * *
16329475 TCTCTAAGGGATATTTTGGTAATTTCACAC-CTTTC
821 CCT-TAAGAGATA-TTTGGTAATTTCACACTC-TCC
* * * * *
16329510 AAGGTGCAATCGAGGTTTTCAAACTTGT-AAAATCATCAAATAATATCAAACCATGATATAGAAC
1 AAGGTCCAATCAAGGTTTTCAAAATTCTAAAAATCATAAAATAATATCAAACCATGATATAGAAC
** * * * * * *
16329574 ATTTTGTAAAATTTTAATCTTGGGAAGGTCAATTTATAAAAATATACCTAAAGGTATTTTTATAA
66 ATTTCATAAAATTTCAACCCTGAGAAGGTCAAATTATAAAAATACACCTAAAGGTATTTTTATAA
* * * * *
16329639 TTTCATACC-TCCTAAGATATGATCTGGGTTTTTAGTACATAAAAATTTCTAAAAAAAAAATCAA
131 TTTAATACCTTCC-AAGATATGATCTGAGTTTTTAATACATAAAAAATCCTAAAAAAAAAATCAA
* * * *
16329703 TTATAAGCT-CAAAATTTTTACGAAAATTCAAATTTGAG-GAGATC-AATTACAAAAATACCCTT
195 TTATAAG-TAAAAAATTTTTACGAAAAGTCAAATTTGAGAAAG-CCAAATTACAAAAATACCC-T
* * *
16329765 AAAGGGTATTTTCATAATTTTACCCTTCTCAAAATGTAATCAA-GCTTTTTAAAAATTCAAAATA
257 AAAAGGTATTTTCACAATTTTACCCTT-TCAAAATGCAATCAAGGC-TTTTAAAAATTCAAAATA
* *
16329829 AAAAATTTCAATGTTAATTCACATTGGTTCCT-ATTTAATTGTCACAAATTCATCCAAGGGTCCA
320 AAAAATTTCAATCTTAATCCACATTGGTTCCTAATTTAATTGTCACAAATTCATCCAAGGGTCCA
* * * *
16329893 AAATTCACCATTTTTTGTTTCAAGGAGCAAATTTCACCCTTAGATGAAGATTGCAAATGTGATCC
385 AAATTCACCATTTTTTGTTTCAAGGAGCAAATTTCACCCTT-GATCAAGATTCCCAATGCGATCC
* ** *
16329958 AATGGTCTAGATTGTTTATTGACAAAGATGTGATTTTTAAAACTCTTCAATTAAGTGAAAACACT
449 AATGGTCTAGATTGTTTATTGACAAAGATGTGATTTTTAAAGCTCTTGGATCAAGTGAAAACACT
* * *
16330023 ATCTTAACC-CTAATACAAAGTTTTTGGTCTTTAGACTATTTTCTTGGAAATCAATGCTTATGTG
514 AT-TT-ACCTCTAATACAAAGTTTTCGATCTTTAGACCATTTTCTTGGAAATCAATGCTT-TGTG
* * * **
16330087 TTCATTTTTATGATTTTAAAGTACCAAAAATCATTAAATAATATGAAACTAAAGTCTAAAAAGTT
576 TTCATTTTTGTGATTTTAAAGCACCAAAAATCATGAAATAATATGAAACTAAA-TCT-GGAAGTT
* * * * * * *
16330152 TCGTGAATATCT-AGCATCAAGAAGGTCAAATTATGAAATTACCTATAAGGGGTATTTTGGTTAT
639 TTGTGAAAATCTGA-CCTCAAAAAGGT-AAATTACGAAATTACCTTTAA-GGGTATTTTGGTAAT
* * ** * * *
16330216 CTCACACTTCCCAAAATGTTGCCATGGTTATAAATGCACAAAAAATCATCAGATATTTTAAAAGA
701 TTCACAC-TCCTAAGGTGTTGCCATGGTTTTAAATGCACAAAAAATCATCAAATATTTTAAAACA
* * * *** *
16330281 TAATTTGGAAAATTTCACAAAAAAGGAACTTTGGAAAGATCAAATTAAGAAATTACCCTTAAGAG
765 TAATCTAGAAAATTTCACAAAAAAGCAACTCAAGAAAGATCAAATGAAGAAATTACCCTTAAGAG
16330346 ATATTTGGTAATTTCACACTCTCC
830 ATATTTGGTAATTTCACACTCTCC
* * * * * *
16330370 ATGGTCCGATCAAGGTTTTCAAAATTCTAAAAATCATAAAATAATATTAAACCATGATTTGGAGC
1 AAGGTCCAATCAAGGTTTTCAAAATTCTAAAAATCATAAAATAATATCAAACCATGATATAGAAC
* * ** * *
16330435 ATTTCATGAAATTTCAACCCTGAGAAGGTCAAATTATGAAAATACATTTAAGGGTATTTTTGTAA
66 ATTTCATAAAATTTCAACCCTGAGAAGGTCAAATTATAAAAATACACCTAAAGGTATTTTTATAA
* * * * * * * * *
16330500 TTTAATGCCTTCCAAGGTGTGATTTGAGTTTTTAATGCATAAAAAATCCTTAAAAAATATTCGAT
131 TTTAATACCTTCCAAGATATGATCTGAGTTTTTAATACATAAAAAATCCTAAAAAAAAAATCAAT
* * * ***
16330565 TATGAGTAAAAAATTTTTTCGAAAAGTCAAATTTGAGAAAGCCAAATTACAAAACTTTTCTAAAA
196 TATAAGTAAAAAATTTTTACGAAAAGTCAAATTTGAGAAAGCCAAATTACAAAAATACCCTAAAA
* ** * * *** * * *
16330630 TGTATTTTGGCAATTTTACCCTTTCGAATTGCAATCAAGGCTTTTATTGATTCAAAGTCACAAAT
261 GGTATTTTCACAATTTTACCCTTTCAAAATGCAATCAAGGCTTTTAAAAATTCAAAATAAAAAAT
* * * * *
16330695 TTCAATCTTAATCCACATT--TACTCTAATTTCATTATCACAAATTCTTCCAAGGGTCCAAACTT
326 TTCAATCTTAATCCACATTGGTTC-CTAATTTAATTGTCACAAATTCATCCAAGGGTCCAAAATT
* *
16330758 CACCCTTGTTCTTGTTTCAAGGAGCAAACTTTCACCCTTGGATCAAGCTTCCCAATGCGATCCAA
390 CACCATT-TT-TTGTTTCAAGGAGCAAA-TTTCACCCTT-GATCAAGATTCCCAATGCGATCCAA
* * * * *
16330823 TGGTCTAGATTGTTTATTGCCAAAGATGTGATTTTTCAAGTTGTTGGATCAAGTGAAAAGA-TCA
451 TGGTCTAGATTGTTTATTGACAAAGATGTGATTTTTAAAGCTCTTGGATCAAGTGAAAACACT-A
* * * * * * * *
16330887 TTTTGCCTTTAATACAATGTTTTCGATCTTTAGCCCATTTTCTTGGAAAGTAAAGGTTTTCATGT
515 -TTTACCTCTAATACAAAGTTTTCGATCTTTAGACCATTTTCTTGGAAA-TCAATGCTTT-GTGT
* *
16330952 TCACTTTTGTGATTTTAAAGCATCAAAAATCATGAAATAATATGAAACTAAAATCTGGTAAGTTT
577 TCATTTTTGTGATTTTAAAGCACCAAAAATCATGAAATAATATGAAACT-AAATCTGG-AAGTTT
* * * *
16331017 TGTAAAAATCTGACCTCGAGAAA-GTAAATTACAAAATTACCCTTAAGTGGTATTTTGGTAA-TT
640 TGTGAAAATCTGACCTC-AAAAAGGTAAATTACGAAATTACCTTTAAG-GGTATTTTGGTAATTT
* * * *
16331080 CTACACCTCCTGAGGTGCTGCCATAGTTTTAAATACACAAAAAATCATCAAATATTTTA
703 C-ACA-CTCCTAAGGTGTTGCCATGGTTTTAAATGCACAAAAAATCATCAAATATTTTA
16331139 TAAGCATTGC
Statistics
Matches: 1303, Mismatches: 271, Indels: 111
0.77 0.16 0.07
Matches are distributed among these distances:
858 2 0.00
859 9 0.01
860 234 0.18
861 384 0.29
862 169 0.13
863 353 0.27
864 135 0.10
865 16 0.01
866 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (853 bp):
AAGGTCCAATCAAGGTTTTCAAAATTCTAAAAATCATAAAATAATATCAAACCATGATATAGAAC
ATTTCATAAAATTTCAACCCTGAGAAGGTCAAATTATAAAAATACACCTAAAGGTATTTTTATAA
TTTAATACCTTCCAAGATATGATCTGAGTTTTTAATACATAAAAAATCCTAAAAAAAAAATCAAT
TATAAGTAAAAAATTTTTACGAAAAGTCAAATTTGAGAAAGCCAAATTACAAAAATACCCTAAAA
GGTATTTTCACAATTTTACCCTTTCAAAATGCAATCAAGGCTTTTAAAAATTCAAAATAAAAAAT
TTCAATCTTAATCCACATTGGTTCCTAATTTAATTGTCACAAATTCATCCAAGGGTCCAAAATTC
ACCATTTTTTGTTTCAAGGAGCAAATTTCACCCTTGATCAAGATTCCCAATGCGATCCAATGGTC
TAGATTGTTTATTGACAAAGATGTGATTTTTAAAGCTCTTGGATCAAGTGAAAACACTATTTACC
TCTAATACAAAGTTTTCGATCTTTAGACCATTTTCTTGGAAATCAATGCTTTGTGTTCATTTTTG
TGATTTTAAAGCACCAAAAATCATGAAATAATATGAAACTAAATCTGGAAGTTTTGTGAAAATCT
GACCTCAAAAAGGTAAATTACGAAATTACCTTTAAGGGTATTTTGGTAATTTCACACTCCTAAGG
TGTTGCCATGGTTTTAAATGCACAAAAAATCATCAAATATTTTAAAACATAATCTAGAAAATTTC
ACAAAAAAGCAACTCAAGAAAGATCAAATGAAGAAATTACCCTTAAGAGATATTTGGTAATTTCA
CACTCTCC
Found at i:16331818 original size:20 final size:20
Alignment explanation
Indices: 16331795--16331857 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
16331785 ATTCAAATAT
16331795 AATATTAATCATACAATAAC
1 AATATTAATCATACAATAAC
* *
16331815 AATAAT-ATCATATC-AT-GC
1 AATATTAATCATA-CAATAAC
* *
16331833 AATATAAAATCATACAATAAT
1 AATAT-TAATCATACAATAAC
16331854 AATA
1 AATA
16331858 AATAAATAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 9
0.68 0.13 0.19
Matches are distributed among these distances:
18 5 0.16
19 9 0.28
20 14 0.44
21 4 0.12
ACGTcount: A:0.56, C:0.13, G:0.02, T:0.30
Consensus pattern (20 bp):
AATATTAATCATACAATAAC
Found at i:16331929 original size:24 final size:24
Alignment explanation
Indices: 16331902--16331982 Score: 74
Period size: 24 Copynumber: 3.2 Consensus size: 24
16331892 TAATCCTACT
16331902 ATCATAGAAATAAATAAATTAATA
1 ATCATAGAAATAAATAAATTAATA
* * *
16331926 ATCAT-GTAATTAAATATATAATCATGCA
1 ATCATAG-AAATAAATA-A-ATTAAT--A
*
16331954 ATCACAGAAATAAATAAATTAATA
1 ATCATAGAAATAAATAAATTAATA
16331978 ATCAT
1 ATCAT
16331983 GCAATTAGAC
Statistics
Matches: 43, Mismatches: 8, Indels: 12
0.68 0.13 0.19
Matches are distributed among these distances:
23 1 0.02
24 18 0.42
25 1 0.02
26 8 0.19
27 1 0.02
28 13 0.30
29 1 0.02
ACGTcount: A:0.56, C:0.09, G:0.05, T:0.31
Consensus pattern (24 bp):
ATCATAGAAATAAATAAATTAATA
Found at i:16331947 original size:52 final size:52
Alignment explanation
Indices: 16331833--16331989 Score: 160
Period size: 52 Copynumber: 3.0 Consensus size: 52
16331823 CATATCATGC
* * * *
16331833 AATATAAAATCATACAAT-A-A-TAATAAATAAATAAATAA-CTATGCAAATAA
1 AATATATAATCATACAATCACAGAAATAAATAAATTAATAATC-ATGC-AATTA
* * * *
16331883 ATATATTAATAATCCTACTATCATAGAAATAAATAAATTAATAATCATGTAATTA
1 A-ATA-T-ATAATCATACAATCACAGAAATAAATAAATTAATAATCATGCAATTA
*
16331938 AATATATAATCATGCAATCACAGAAATAAATAAATTAATAATCATGCAATTA
1 AATATATAATCATACAATCACAGAAATAAATAAATTAATAATCATGCAATTA
16331990 GACATGCAAT
Statistics
Matches: 88, Mismatches: 12, Indels: 12
0.79 0.11 0.11
Matches are distributed among these distances:
50 1 0.01
51 3 0.03
52 43 0.49
53 11 0.12
54 4 0.05
55 6 0.07
56 19 0.22
57 1 0.01
ACGTcount: A:0.56, C:0.10, G:0.04, T:0.31
Consensus pattern (52 bp):
AATATATAATCATACAATCACAGAAATAAATAAATTAATAATCATGCAATTA
Found at i:16332004 original size:32 final size:32
Alignment explanation
Indices: 16331922--16332164 Score: 126
Period size: 32 Copynumber: 8.0 Consensus size: 32
16331912 TAAATAAATT
* *
16331922 AATAATCATGTAATTAAATATATAATCATGC-
1 AATAAACATGCAATTAAATATATAATCATGCA
* *
16331953 AAT-CACA-G-AAATAAATAAATTAATAATCATGCA
1 AATAAACATGCAATTAAAT--A-T-ATAATCATGCA
* * * *
16331986 ATTAGACATGCAATTAAATATATAGTCATACA
1 AATAAACATGCAATTAAATATATAATCATGCA
*
16332018 AAT--A-AT--AA-T-ATTA-ATAATCATGCA
1 AATAAACATGCAATTAAATATATAATCATGCA
*
16332042 AATAAACATACAATTAAATATATAATCATGCA
1 AATAAACATGCAATTAAATATATAATCATGCA
* * * *
16332074 AATAAACATGCAAACTAAATGTATAACCATTC-
1 AATAAACATGC-AATTAAATATATAATCATGCA
*** * * * *
16332106 TGCAAATA-GTAA-T--ATAT-TAAGCTTGCA
1 AATAAACATGCAATTAAATATATAATCATGCA
16332133 AATAAACATGCAATTAAATATATAATCATGCA
1 AATAAACATGCAATTAAATATATAATCATGCA
16332165 GCTAATAATA
Statistics
Matches: 155, Mismatches: 34, Indels: 45
0.66 0.15 0.19
Matches are distributed among these distances:
24 12 0.08
25 3 0.02
26 8 0.05
27 11 0.07
28 10 0.06
29 7 0.05
30 7 0.05
31 12 0.08
32 54 0.35
33 19 0.12
34 4 0.03
35 1 0.01
36 7 0.05
ACGTcount: A:0.51, C:0.12, G:0.07, T:0.30
Consensus pattern (32 bp):
AATAAACATGCAATTAAATATATAATCATGCA
Found at i:16332035 original size:56 final size:55
Alignment explanation
Indices: 16331961--16332078 Score: 173
Period size: 56 Copynumber: 2.1 Consensus size: 55
16331951 GCAATCACAG
* * * *
16331961 AAATAAATAAATTAATAATCATGCAATTAGACATGCAATTAAATATATAGTCATAC
1 AAAT-AATAAATTAATAATCATGCAAATAAACATACAATTAAATATATAATCATAC
*
16332017 AAATAATAATATTAATAATCATGCAAATAAACATACAATTAAATATATAATCATGC
1 AAATAATAA-ATTAATAATCATGCAAATAAACATACAATTAAATATATAATCATAC
16332073 AAATAA
1 AAATAA
16332079 ACATGCAAAC
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
55 5 0.09
56 51 0.91
ACGTcount: A:0.55, C:0.10, G:0.05, T:0.30
Consensus pattern (55 bp):
AAATAATAAATTAATAATCATGCAAATAAACATACAATTAAATATATAATCATAC
Found at i:16332162 original size:20 final size:20
Alignment explanation
Indices: 16332134--16332199 Score: 60
Period size: 20 Copynumber: 3.1 Consensus size: 20
16332124 AAGCTTGCAA
*
16332134 ATAAACATGCAATTAAATAT
1 ATAATCATGCAATTAAATAT
* *
16332154 ATAATCATGCAGCTAATAATATT
1 ATAATCATGCA-ATTA-AATA-T
*
16332177 AATAATCAAGCAATTAAATAT
1 -ATAATCATGCAATTAAATAT
16332198 AT
1 AT
16332200 TAATAATCAT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
20 12 0.33
21 3 0.08
22 8 0.22
23 3 0.08
24 10 0.28
ACGTcount: A:0.52, C:0.11, G:0.06, T:0.32
Consensus pattern (20 bp):
ATAATCATGCAATTAAATAT
Found at i:16332182 original size:24 final size:24
Alignment explanation
Indices: 16332154--16332295 Score: 102
Period size: 24 Copynumber: 6.1 Consensus size: 24
16332144 AATTAAATAT
*
16332154 ATAATCATGCAGCT-AATAATATTA
1 ATAATCATGCAACTAAAT-ATATTA
* *
16332178 ATAATCAAGCAATTAAATATATTA
1 ATAATCATGCAACTAAATATATTA
*
16332202 ATAATCATGCAA-TCAAAT-TA-AA
1 ATAATCATGCAACT-AAATATATTA
* * *
16332224 TATAATCGTACAAATAAATATATTA
1 -ATAATCATGCAACTAAATATATTA
16332249 ATAATCATG---C-AAATATATTA
1 ATAATCATGCAACTAAATATATTA
** *
16332269 ATAAATCACACAAATAAATATATTA
1 AT-AATCATGCAACTAAATATATTA
16332294 AT
1 AT
16332296 TATGCAAACA
Statistics
Matches: 93, Mismatches: 14, Indels: 21
0.73 0.11 0.16
Matches are distributed among these distances:
20 12 0.13
21 5 0.05
22 1 0.01
23 17 0.18
24 42 0.45
25 16 0.17
ACGTcount: A:0.53, C:0.11, G:0.04, T:0.32
Consensus pattern (24 bp):
ATAATCATGCAACTAAATATATTA
Found at i:16332243 original size:47 final size:45
Alignment explanation
Indices: 16332147--16332295 Score: 155
Period size: 45 Copynumber: 3.3 Consensus size: 45
16332137 AACATGCAAT
* * *
16332147 TAAATATA-TAATCATGCA-GCTAATAATATTAAT-AATCA-AGCAAT
1 TAAATATATTAATAAT-CATGCAAATAA-ATTAATAAATCACA-CAAA
**
16332191 TAAATATATTAATAATCATGC-AATCAAATTAAATATAATCGTACAAA
1 TAAATATATTAATAATCATGCAAAT-AAATT-AATA-AATCACACAAA
*
16332238 TAAATATATTAATAATCATGCAAATATATTAATAAATCACACAAA
1 TAAATATATTAATAATCATGCAAATAAATTAATAAATCACACAAA
16332283 TAAATATATTAAT
1 TAAATATATTAAT
16332296 TATGCAAACA
Statistics
Matches: 91, Mismatches: 6, Indels: 15
0.81 0.05 0.13
Matches are distributed among these distances:
44 16 0.18
45 35 0.38
46 4 0.04
47 32 0.35
48 4 0.04
ACGTcount: A:0.53, C:0.10, G:0.04, T:0.33
Consensus pattern (45 bp):
TAAATATATTAATAATCATGCAAATAAATTAATAAATCACACAAA
Found at i:16332282 original size:21 final size:20
Alignment explanation
Indices: 16332239--16332284 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
16332229 TCGTACAAAT
**
16332239 AAATATATTAATAATCATGC
1 AAATATATTAATAATCACAC
16332259 AAATATATTAATAAATCACAC
1 AAATATATTAAT-AATCACAC
16332280 AAATA
1 AAATA
16332285 AATATATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 12 0.52
21 11 0.48
ACGTcount: A:0.57, C:0.11, G:0.02, T:0.30
Consensus pattern (20 bp):
AAATATATTAATAATCACAC
Found at i:16332303 original size:21 final size:21
Alignment explanation
Indices: 16332234--16332311 Score: 59
Period size: 21 Copynumber: 3.6 Consensus size: 21
16332224 TATAATCGTA
16332234 CAAATAAATATATTAATAATCATG
1 CAAATAAATATATTAAT--T-ATG
* * * **
16332258 CAAATATAT-TAATAAATCACA
1 CAAATAAATAT-ATTAATTATG
16332279 CAAATAAATATATTAATTATG
1 CAAATAAATATATTAATTATG
*
16332300 CAAACAAATATA
1 CAAATAAATATA
16332312 CTAGGCAAAT
Statistics
Matches: 41, Mismatches: 11, Indels: 7
0.69 0.19 0.12
Matches are distributed among these distances:
21 26 0.63
22 1 0.02
23 1 0.02
24 13 0.32
ACGTcount: A:0.56, C:0.10, G:0.03, T:0.31
Consensus pattern (21 bp):
CAAATAAATATATTAATTATG
Found at i:16332306 original size:25 final size:25
Alignment explanation
Indices: 16332172--16332309 Score: 75
Period size: 24 Copynumber: 5.9 Consensus size: 25
16332162 GCAGCTAATA
* *
16332172 ATATTAAT-AATCAAGCAATTAAAT
1 ATATTAATAAATCAAACAAATAAAT
**
16332196 ATATTAAT-AATCATGC-AATCAAAT
1 ATATTAATAAATCAAACAAAT-AAAT
**
16332220 -TA--AATATAATCGTACAAATAAAT
1 ATATTAATA-AATCAAACAAATAAAT
**
16332243 ATATTAAT-AATCATGC----AAAT
1 ATATTAATAAATCAAACAAATAAAT
*
16332263 ATATTAATAAATCACACAAATAAAT
1 ATATTAATAAATCAAACAAATAAAT
*
16332288 ATATTAAT-TATGCAAACAAATA
1 ATATTAATAAAT-CAAACAAATA
16332310 TACTAGGCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 25
0.72 0.08 0.20
Matches are distributed among these distances:
20 12 0.13
21 9 0.10
23 14 0.15
24 32 0.35
25 21 0.23
26 3 0.03
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.32
Consensus pattern (25 bp):
ATATTAATAAATCAAACAAATAAAT
Found at i:16332921 original size:17 final size:17
Alignment explanation
Indices: 16332899--16332931 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
16332889 CCAAATTTTT
16332899 CTTTTTTCTTTTTTACG
1 CTTTTTTCTTTTTTACG
*
16332916 CTTTTTTTTTTTTTAC
1 CTTTTTTCTTTTTTAC
16332932 CAATTGACTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.06, C:0.15, G:0.03, T:0.76
Consensus pattern (17 bp):
CTTTTTTCTTTTTTACG
Found at i:16333322 original size:43 final size:43
Alignment explanation
Indices: 16333269--16333631 Score: 238
Period size: 42 Copynumber: 8.4 Consensus size: 43
16333259 TTTTTTTTGA
* * *
16333269 AAAATACTCCCCCATAATTGAGGTTTTGAAAATTTTGAAAAAT
1 AAAATGCTCCCCCATAACTGAGGCTTTGAAAATTTTGAAAAAT
* * * * * *
16333312 AAAATTCTCCCCTACAACTGAGGCTTTGGAACTTTTG-AAAGT
1 AAAATGCTCCCCCATAACTGAGGCTTTGAAAATTTTGAAAAAT
*
16333354 AAAATGCTCCCCCATAACTAAGGCTTTGGAACTTTTGAACTTTTGAAAAAT
1 AAAATGCTCCCCCATAACTGAGGCTTT-GAA------AA-TTTTGAAAAAT
* * * *
16333405 -AAATACTTCCCCACAA-TCGAGGCTTTGAAACTTTTG-AAAAT
1 AAAATGCTCCCCCATAACT-GAGGCTTTGAAAATTTTGAAAAAT
* * *
16333446 AAAATGCTCCCCCACAACTGAGGCTTT-CAAATATTGAAAAAT
1 AAAATGCTCCCCCATAACTGAGGCTTTGAAAATTTTGAAAAAT
* * * * ** *
16333488 AAAATTCTTCACTAT-TGTGAGGCTTTGAAACTTTTG-AAAAT
1 AAAATGCTCCCCCATAACTGAGGCTTTGAAAATTTTGAAAAAT
* * * * * ** **
16333529 AAGATGCTCCCTCACAACTGAGGTTTTGGAGCTTTCAAAAAAT
1 AAAATGCTCCCCCATAACTGAGGCTTTGAAAATTTTGAAAAAT
* * * *
16333572 AAAATGCTCCCCCATAACTGTGTCTTT-AGAACTTTGAAAAAAT
1 AAAATGCTCCCCCATAACTGAGGCTTTGAAAATTTTG-AAAAAT
*
16333615 AAAATGCTCCTCCATAA
1 AAAATGCTCCCCCATAA
16333632 TCGATAATGC
Statistics
Matches: 240, Mismatches: 63, Indels: 34
0.71 0.19 0.10
Matches are distributed among these distances:
41 33 0.14
42 91 0.38
43 82 0.34
49 5 0.02
50 25 0.10
51 4 0.02
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.30
Consensus pattern (43 bp):
AAAATGCTCCCCCATAACTGAGGCTTTGAAAATTTTGAAAAAT
Found at i:16333417 original size:50 final size:50
Alignment explanation
Indices: 16333335--16333442 Score: 121
Period size: 50 Copynumber: 2.2 Consensus size: 50
16333325 ACAACTGAGG
* * * * *
16333335 CTTTGGAACTTTTGAAAGTAAAATGCTCCCCCATAA-CTAAGGCTTTGGAA
1 CTTTTGAACTTTTGAAAATAAAATACTCCCCCACAATC-AAGGCTTTGAAA
* *
16333385 CTTTTGAACTTTTGAAAA-ATAAATACTTCCCCACAATCGAGGCTTTGAAA
1 CTTTTGAACTTTTGAAAATA-AAATACTCCCCCACAATCAAGGCTTTGAAA
16333435 CTTTTGAA
1 CTTTTGAA
16333443 AATAAAATGC
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
49 1 0.02
50 47 0.96
51 1 0.02
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.32
Consensus pattern (50 bp):
CTTTTGAACTTTTGAAAATAAAATACTCCCCCACAATCAAGGCTTTGAAA
Found at i:16333459 original size:92 final size:94
Alignment explanation
Indices: 16333292--16333472 Score: 262
Period size: 92 Copynumber: 1.9 Consensus size: 94
16333282 ATAATTGAGG
* * *
16333292 TTTTGAAAATTTTGAAAAATAAAATTCTCCCCTACAACTGAGGCTTTGGAACTTTTGAAAGTAAA
1 TTTTGAAAATTTTGAAAAATAAAACTCTCCCCTACAACTGAGGCTTTGAAACTTTTGAAAATAAA
*
16333357 ATGCTCCCCCATAACTAAGGCTTTGGAAC
66 ATGCTCCCCCACAACTAAGGCTTTGGAAC
*
16333386 TTTTG-AACTTTTGAAAAATAAATACT-TCCCC-ACAA-TCGAGGCTTTGAAACTTTTGAAAATA
1 TTTTGAAAATTTTGAAAAATAAA-ACTCTCCCCTACAACT-GAGGCTTTGAAACTTTTGAAAATA
*
16333447 AAATGCTCCCCCACAACTGAGGCTTT
64 AAATGCTCCCCCACAACTAAGGCTTT
16333473 CAAATATTGA
Statistics
Matches: 79, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
91 1 0.01
92 50 0.63
93 21 0.27
94 7 0.09
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.31
Consensus pattern (94 bp):
TTTTGAAAATTTTGAAAAATAAAACTCTCCCCTACAACTGAGGCTTTGAAACTTTTGAAAATAAA
ATGCTCCCCCACAACTAAGGCTTTGGAAC
Found at i:16333763 original size:84 final size:85
Alignment explanation
Indices: 16333648--16333852 Score: 261
Period size: 85 Copynumber: 2.4 Consensus size: 85
16333638 ATGCTCCTCC
* * *
16333648 ACAATTGAGGCTTAG-AACTTTTGAAAAATAAAATGCTCTTCCACAACTAAGGCTTTAAAAC-TT
1 ACAATTAAGGCTTTGAAACTTTTG-AAAATAAAATGCTCTCCCACAACTAAGGCTTTAAAACTTT
16333711 TAAAAAATAAAATACTCCCCA
65 TAAAAAATAAAATACTCCCCA
* ** *
16333732 ATAATTAAGGCTTTGAAACTTTTGAAAATAAAATGCTCTCCCACAACTAAGGCTTTGGAGCTTTT
1 ACAATTAAGGCTTTGAAACTTTTGAAAATAAAATGCTCTCCCACAACTAAGGCTTTAAAACTTTT
* * *
16333797 GAAAAATAAAATGCTCCCCC
66 AAAAAATAAAATACTCCCCA
* * *
16333817 ACAATTAAGGTTTTGAAGCTTTTAGGAAATAAAATG
1 ACAATTAAGGCTTTGAAACTTTT-GAAAATAAAATG
16333853 AGATTAGTCT
Statistics
Matches: 104, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
84 45 0.43
85 48 0.46
86 11 0.11
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.29
Consensus pattern (85 bp):
ACAATTAAGGCTTTGAAACTTTTGAAAATAAAATGCTCTCCCACAACTAAGGCTTTAAAACTTTT
AAAAAATAAAATACTCCCCA
Found at i:16333818 original size:43 final size:43
Alignment explanation
Indices: 16333637--16333852 Score: 233
Period size: 42 Copynumber: 5.1 Consensus size: 43
16333627 CATAATCGAT
* * *
16333637 AATGCTCCTCCACAATTGAGGCTTAG-AACTTTTGAAAAATAA
1 AATGCTCCCCCACAATTAAGGCTTTGAAACTTTTGAAAAATAA
** * * *
16333679 AATGCTCTTCCACAACTAAGGCTTTAAAAC-TTTAAAAAATAA
1 AATGCTCCCCCACAATTAAGGCTTTGAAACTTTTGAAAAATAA
* * *
16333721 AATACTCCCCAATAATTAAGGCTTTGAAACTTTTG-AAAATAA
1 AATGCTCCCCCACAATTAAGGCTTTGAAACTTTTGAAAAATAA
* * * *
16333763 AATGCTCTCCCACAACTAAGGCTTTGGAGCTTTTGAAAAATAA
1 AATGCTCCCCCACAATTAAGGCTTTGAAACTTTTGAAAAATAA
* * *
16333806 AATGCTCCCCCACAATTAAGGTTTTGAAGCTTTT-AGGAAATAA
1 AATGCTCCCCCACAATTAAGGCTTTGAAACTTTTGA-AAAATAA
16333849 AATG
1 AATG
16333853 AGATTAGTCT
Statistics
Matches: 144, Mismatches: 26, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
42 91 0.63
43 53 0.37
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (43 bp):
AATGCTCCCCCACAATTAAGGCTTTGAAACTTTTGAAAAATAA
Found at i:16335307 original size:18 final size:20
Alignment explanation
Indices: 16335286--16335326 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
16335276 TTAGTTTAAG
16335286 TTTTC-CTTTTT-CTTTTTT
1 TTTTCACTTTTTACTTTTTT
*
16335304 TTTTCATTTTTTACTTTTTT
1 TTTTCACTTTTTACTTTTTT
16335324 TTT
1 TTT
16335327 CTTTTATGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
19 5 0.25
20 10 0.50
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.83
Consensus pattern (20 bp):
TTTTCACTTTTTACTTTTTT
Found at i:16335315 original size:26 final size:26
Alignment explanation
Indices: 16335286--16335341 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
16335276 TTAGTTTAAG
* *
16335286 TTTTCCTTTTTCTTTT-TTTTTTCATT
1 TTTTACTTTTT-TTTTCTTTTATCATT
*
16335312 TTTTACTTTTTTTTTCTTTTATGATT
1 TTTTACTTTTTTTTTCTTTTATCATT
16335338 TTTT
1 TTTT
16335342 TTTTTGCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 4 0.15
26 22 0.85
ACGTcount: A:0.07, C:0.11, G:0.02, T:0.80
Consensus pattern (26 bp):
TTTTACTTTTTTTTTCTTTTATCATT
Found at i:16335331 original size:18 final size:18
Alignment explanation
Indices: 16335286--16335344 Score: 59
Period size: 18 Copynumber: 3.2 Consensus size: 18
16335276 TTAGTTTAAG
*
16335286 TTTTCCTTTTT-CTTTTTT
1 TTTTCTTTTTTAC-TTTTT
16335304 TTTTCATTTTTTACTTTTT
1 TTTTC-TTTTTTACTTTTT
*
16335323 TTTTCTTTTATGA-TTTTT
1 TTTTCTTTT-TTACTTTTT
16335341 TTTT
1 TTTT
16335345 TTGCATATCC
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
18 18 0.50
19 17 0.47
20 1 0.03
ACGTcount: A:0.07, C:0.10, G:0.02, T:0.81
Consensus pattern (18 bp):
TTTTCTTTTTTACTTTTT
Found at i:16335345 original size:19 final size:19
Alignment explanation
Indices: 16335298--16335345 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
16335288 TTCCTTTTTC
*
16335298 TTTTTTTTTTCATTTTTTA
1 TTTTTTTTTTCATTTTTGA
*
16335317 CTTTTTTTTTC-TTTTATGA
1 TTTTTTTTTTCATTTT-TGA
16335336 TTTTTTTTTT
1 TTTTTTTTTT
16335346 TGCATATCCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.08, C:0.06, G:0.02, T:0.83
Consensus pattern (19 bp):
TTTTTTTTTTCATTTTTGA
Found at i:16335868 original size:49 final size:49
Alignment explanation
Indices: 16335810--16335908 Score: 144
Period size: 49 Copynumber: 2.0 Consensus size: 49
16335800 TGATCAAGTC
* *
16335810 TTTTTCAAACTTTGCCCCCCAGTGTGGAGGGTGATCCTTGATTAGGGTT
1 TTTTTCAAACTTTACCCCCCAGTGTAGAGGGTGATCCTTGATTAGGGTT
*** *
16335859 TTTTTCAAACTTTACCCTTTAGTGTAGAGGGTGATCTTTGATTAGGGTT
1 TTTTTCAAACTTTACCCCCCAGTGTAGAGGGTGATCCTTGATTAGGGTT
16335908 T
1 T
16335909 CTTTAAAAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.18, C:0.16, G:0.24, T:0.41
Consensus pattern (49 bp):
TTTTTCAAACTTTACCCCCCAGTGTAGAGGGTGATCCTTGATTAGGGTT
Found at i:16338311 original size:56 final size:56
Alignment explanation
Indices: 16338223--16338334 Score: 215
Period size: 56 Copynumber: 2.0 Consensus size: 56
16338213 GTCTTCCATT
*
16338223 CTTCAACTTTTTCTACCATGTCCTTGGCTTTTTAGGGAGCCATAGTGATTTGGTCA
1 CTTCAACTTTTTCTACCATGTCCTTGGATTTTTAGGGAGCCATAGTGATTTGGTCA
16338279 CTTCAACTTTTTCTACCATGTCCTTGGATTTTTAGGGAGCCATAGTGATTTGGTCA
1 CTTCAACTTTTTCTACCATGTCCTTGGATTTTTAGGGAGCCATAGTGATTTGGTCA
16338335 AGCAATCTTT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.19, C:0.21, G:0.20, T:0.41
Consensus pattern (56 bp):
CTTCAACTTTTTCTACCATGTCCTTGGATTTTTAGGGAGCCATAGTGATTTGGTCA
Found at i:16341259 original size:20 final size:20
Alignment explanation
Indices: 16341234--16341291 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
16341224 TGCAAGAATG
16341234 TCATGCAAATATATTAATTA
1 TCATGCAAATATATTAATTA
* *
16341254 TCATGC-AATAATATAAAATA
1 TCATGCAAAT-ATATTAATTA
* *
16341274 CCATGCAAAGATATTAAT
1 TCATGCAAATATATTAAT
16341292 AACCGTTCAT
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
19 3 0.10
20 25 0.83
21 2 0.07
ACGTcount: A:0.48, C:0.12, G:0.07, T:0.33
Consensus pattern (20 bp):
TCATGCAAATATATTAATTA
Found at i:16341445 original size:24 final size:24
Alignment explanation
Indices: 16341415--16341476 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
16341405 AATATCATTC
16341415 AAATATAATATTA-ATCATGCAAT
1 AAATATAATATTATATCATGCAAT
*
16341438 AACATATAATATCATATCATGCAAT
1 AA-ATATAATATTATATCATGCAAT
*
16341463 AAATATAAAATTAT
1 AAATATAATATTAT
16341477 GCAATAATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
23 2 0.06
24 20 0.59
25 12 0.35
ACGTcount: A:0.53, C:0.10, G:0.03, T:0.34
Consensus pattern (24 bp):
AAATATAATATTATATCATGCAAT
Found at i:16341546 original size:52 final size:49
Alignment explanation
Indices: 16341485--16341659 Score: 138
Period size: 52 Copynumber: 3.3 Consensus size: 49
16341475 ATGCAATAAT
*
16341485 AATAAATAAATAACTATGCAAATAAATATATTGATAATCATACAATCACACA
1 AATAAATAAATAA-TATGCAAATAAA-ATATT-ATAATCATGCAATCACACA
* *
16341537 AATAAATAAATTAATAATTATGC-AATTAAATA-TATAATCATGCAATTAACAATGCA
1 AATAAAT--A--AATAA-TATGCAAATAAAATATTATAATCATGCAA-TCAC-A--CA
* * * *
16341593 ATTAAATATATAATCATGCAAATAAAATATTAATAATTATGCACTCACACA
1 AATAAATAAATAAT-ATGCAAATAAAATATT-ATAATCATGCAATCACACA
16341644 AATAAATAAATTAATA
1 AATAAATAAA-TAATA
16341660 ATCATGCAAT
Statistics
Matches: 98, Mismatches: 12, Indels: 27
0.72 0.09 0.20
Matches are distributed among these distances:
51 12 0.12
52 30 0.31
53 13 0.13
54 10 0.10
55 15 0.15
56 18 0.18
ACGTcount: A:0.55, C:0.11, G:0.04, T:0.30
Consensus pattern (49 bp):
AATAAATAAATAATATGCAAATAAAATATTATAATCATGCAATCACACA
Found at i:16341596 original size:32 final size:32
Alignment explanation
Indices: 16341556--16341756 Score: 131
Period size: 32 Copynumber: 6.8 Consensus size: 32
16341546 ATTAATAATT
16341556 ATGCAATTAAATATATAATCATGCAATTAACA
1 ATGCAATTAAATATATAATCATGCAATTAACA
*
16341588 ATGCAATTAAATATATAATCATGCAAATAA-A
1 ATGCAATTAAATATATAATCATGCAATTAACA
* *
16341619 AT---ATT-AATA-AT--T-ATGCACTCACACAA
1 ATGCAATTAAATATATAATCATGCAATTA-AC-A
*
16341645 AT--AAATAAAT-TAATAATCATGCAATTAGAC-
1 ATGCAATTAAATAT-ATAATCATGCAATTA-ACA
* *
16341675 ATGCAATCAAATATATAATCATGC-A--AATA
1 ATGCAATTAAATATATAATCATGCAATTAACA
* *
16341704 AT--AA-T-ATTA-ACAATCATGCAAATTAAC-
1 ATGCAATTAAATATATAATCATGC-AATTAACA
16341731 ATGCAATTAAATATATAATCATGCAA
1 ATGCAATTAAATATATAATCATGCAA
16341757 ATAAAAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 47
0.67 0.09 0.24
Matches are distributed among these distances:
23 6 0.05
24 11 0.09
25 3 0.02
26 6 0.05
27 10 0.08
28 9 0.07
29 7 0.05
30 3 0.02
31 10 0.08
32 63 0.49
33 1 0.01
ACGTcount: A:0.51, C:0.13, G:0.06, T:0.30
Consensus pattern (32 bp):
ATGCAATTAAATATATAATCATGCAATTAACA
Found at i:16341622 original size:21 final size:19
Alignment explanation
Indices: 16341588--16341626 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
16341578 GCAATTAACA
*
16341588 ATGCAATTAAATATATAATC
1 ATGCAATAAAATAT-TAATC
16341608 ATGCAAATAAAATATTAAT
1 ATGC-AATAAAATATTAAT
16341627 AATTATGCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.54, C:0.08, G:0.05, T:0.33
Consensus pattern (19 bp):
ATGCAATAAAATATTAATC
Found at i:16341683 original size:107 final size:108
Alignment explanation
Indices: 16341487--16341683 Score: 281
Period size: 107 Copynumber: 1.8 Consensus size: 108
16341477 GCAATAATAA
*
16341487 TAAATAAATAACTATGCAAATAAATATATTGATAATCATACAATCACACAAATAAATAAATTAAT
1 TAAATAAATAACTATGCAAATAAATATATTAATAATCATACAATCACACAAATAAATAAATTAAT
* * *
16341552 AATTATGCAATTAAATATATAATCATGCAATTAACAATGCAAT
66 AATCATGCAATTAAACATACAATCATGCAATTAACAATGCAAT
* * * *
16341595 TAAATATATAA-TCATGCAAATAAA-ATATTAATAATTATGCACTCACACAAATAAATAAATTAA
1 TAAATAAATAACT-ATGCAAATAAATATATTAATAATCATACAATCACACAAATAAATAAATTAA
* *
16341658 TAATCATGCAATTAGACATGCAATCA
65 TAATCATGCAATTAAACATACAATCA
16341684 AATATATAAT
Statistics
Matches: 78, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
107 57 0.73
108 21 0.27
ACGTcount: A:0.53, C:0.12, G:0.05, T:0.30
Consensus pattern (108 bp):
TAAATAAATAACTATGCAAATAAATATATTAATAATCATACAATCACACAAATAAATAAATTAAT
AATCATGCAATTAAACATACAATCATGCAATTAACAATGCAAT
Found at i:16341697 original size:20 final size:19
Alignment explanation
Indices: 16341673--16341784 Score: 63
Period size: 22 Copynumber: 5.6 Consensus size: 19
16341663 ATGCAATTAG
*
16341673 ACATGCAATCAAATATATA
1 ACATGCAATAAAATATATA
16341692 ATCATGCAAATAATAATAT-TA
1 A-CATGC-AATAA-AATATATA
**
16341713 ACAAT-C-ATGCAA-AT-TA
1 AC-ATGCAATAAAATATATA
*
16341729 ACATGCAATTAAATATATA
1 ACATGCAATAAAATATATA
16341748 ATCATGCAAATAAAAATATATAA
1 A-CATGC-AAT-AAAATATAT-A
16341771 ACCATGCAAATAAA
1 A-CATGC-AATAAA
16341785 TATGCAATTA
Statistics
Matches: 74, Mismatches: 7, Indels: 21
0.73 0.07 0.21
Matches are distributed among these distances:
15 2 0.03
16 7 0.09
17 6 0.08
18 4 0.05
19 4 0.05
20 12 0.16
21 12 0.16
22 16 0.22
23 11 0.15
ACGTcount: A:0.54, C:0.13, G:0.05, T:0.27
Consensus pattern (19 bp):
ACATGCAATAAAATATATA
Found at i:16341699 original size:107 final size:112
Alignment explanation
Indices: 16341455--16341709 Score: 276
Period size: 107 Copynumber: 2.3 Consensus size: 112
16341445 AATATCATAT
* * *
16341455 CATGCAAT-AAATATAAAATTATGCAATAATAATAAATAAATAACTATGCAAATAAATATATTGA
1 CATGCAATCAAATATATAATCATGCAATAATAATAAATAAAT-ACTATGCAAATAAATATATTAA
*
16341519 TAATCATACAATCACACAAATAAATAAATTAATAATTATGCAATTAAA
65 TAATCATACAATCACACAAATAAATAAATTAATAATCATGCAATTAAA
* ** * * *
16341567 TATATAATCATGCA-AT-TAA-CAATGCAATTA-AATATAT-AAT-C-ATGCAAATAAA-ATATT
1 CATGCAATCA--AATATATAATC-ATGCAATAATAATAAATAAATACTATGCAAATAAATATATT
* * * *
16341624 AATAATTATGCACTCACACAAATAAATAAATTAATAATCATGCAATTAGA
63 AATAATCATACAATCACACAAATAAATAAATTAATAATCATGCAATTAAA
16341674 CATGCAATCAAATATATAATCATGCAAATAATAATA
1 CATGCAATCAAATATATAATCATGC-AATAATAATA
16341710 TTAACAATCA
Statistics
Matches: 115, Mismatches: 19, Indels: 21
0.74 0.12 0.14
Matches are distributed among these distances:
105 1 0.01
106 2 0.02
107 63 0.55
108 16 0.14
109 5 0.04
111 3 0.03
112 11 0.10
113 11 0.10
114 2 0.02
115 1 0.01
ACGTcount: A:0.54, C:0.11, G:0.05, T:0.30
Consensus pattern (112 bp):
CATGCAATCAAATATATAATCATGCAATAATAATAAATAAATACTATGCAAATAAATATATTAAT
AATCATACAATCACACAAATAAATAAATTAATAATCATGCAATTAAA
Found at i:16341767 original size:22 final size:23
Alignment explanation
Indices: 16341739--16341784 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
16341729 ACATGCAATT
*
16341739 AAATATAT-AATCATGCAAATAA
1 AAATATATAAACCATGCAAATAA
16341761 AAATATATAAACCATGCAAATAA
1 AAATATATAAACCATGCAAATAA
16341784 A
1 A
16341785 TATGCAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.61, C:0.11, G:0.04, T:0.24
Consensus pattern (23 bp):
AAATATATAAACCATGCAAATAA
Found at i:16341844 original size:35 final size:32
Alignment explanation
Indices: 16341798--16341925 Score: 103
Period size: 32 Copynumber: 4.2 Consensus size: 32
16341788 GCAATTAAAT
* *
16341798 AAATAATCATGCAAATTGTAATATATTAATCATGC
1 AAATAAACATGC-AATT-AAATATA-TAATCATGC
16341833 AAATAAACATGCAATTAAATATATAATCATG-
1 AAATAAACATGCAATTAAATATATAATCATGC
* * *
16341864 ---T-AAC-T--AATTATAGATA-AATCGTGC
1 AAATAAACATGCAATTAAATATATAATCATGC
* *
16341888 AAATAAACATGCAATTAAATTTATAATCGTGC
1 AAATAAACATGCAATTAAATATATAATCATGC
16341920 AAATAA
1 AAATAA
16341926 TAATACATAA
Statistics
Matches: 76, Mismatches: 8, Indels: 21
0.72 0.08 0.20
Matches are distributed among these distances:
23 6 0.08
24 9 0.12
26 1 0.01
27 4 0.05
28 4 0.05
29 1 0.01
31 8 0.11
32 22 0.29
33 6 0.08
34 4 0.05
35 11 0.14
ACGTcount: A:0.49, C:0.11, G:0.09, T:0.31
Consensus pattern (32 bp):
AAATAAACATGCAATTAAATATATAATCATGC
Found at i:16341863 original size:20 final size:20
Alignment explanation
Indices: 16341730--16341863 Score: 69
Period size: 20 Copynumber: 7.2 Consensus size: 20
16341720 TGCAAATTAA
16341730 CATGCAATTAAATATATAAT
1 CATGCAATTAAATATATAAT
* *
16341750 CATGCAAATAAAAATAT-AT
1 CATGCAATTAAATATATAAT
** * **
16341769 -AAACCATGCAA-ATA-AAT
1 CATGCAATTAAATATATAAT
*
16341786 -ATGCAATTAAATAAATAAT
1 CATGCAATTAAATATATAAT
*
16341805 CATGCAAATTGTAATATATTAAT
1 CATGC-AATT-AAATATA-TAAT
16341828 CATGC-----AA-ATA-AA-
1 CATGCAATTAAATATATAAT
16341840 CATGCAATTAAATATATAAT
1 CATGCAATTAAATATATAAT
16341860 CATG
1 CATG
16341864 TAACTAATTA
Statistics
Matches: 83, Mismatches: 16, Indels: 30
0.64 0.12 0.23
Matches are distributed among these distances:
12 5 0.06
13 2 0.02
15 3 0.04
16 2 0.02
17 13 0.16
18 10 0.12
19 7 0.08
20 23 0.28
21 4 0.05
22 5 0.06
23 9 0.11
ACGTcount: A:0.52, C:0.11, G:0.07, T:0.30
Consensus pattern (20 bp):
CATGCAATTAAATATATAAT
Found at i:16341936 original size:55 final size:55
Alignment explanation
Indices: 16341659--16341944 Score: 367
Period size: 55 Copynumber: 5.2 Consensus size: 55
16341649 ATAAATTAAT
* * *
16341659 AATCATGCAATTAGACATGCAATCAAATATATAATCATGCAAATAATAATAT-TAA
1 AATCATGCAAATAAACATGCAATTAAATATATAATCATGCAAATAATAATATAT-A
* *
16341714 CAATCATGCAAATTAACATGCAATTAAATATATAATCATGCAAATAAAAATATATA
1 -AATCATGCAAATAAACATGCAATTAAATATATAATCATGCAAATAATAATATATA
* * * ** *
16341770 AACCATGCAAATAAATATGCAATTAAATAAATAATCATGCAAATTGTAATATATT
1 AATCATGCAAATAAACATGCAATTAAATATATAATCATGCAAATAATAATATATA
* * * *
16341825 AATCATGCAAATAAACATGCAATTAAATATATAATCATGTAACTAATTATAGATA
1 AATCATGCAAATAAACATGCAATTAAATATATAATCATGCAAATAATAATATATA
* * * *
16341880 AATCGTGCAAATAAACATGCAATTAAATTTATAATCGTGCAAATAATAATACATA
1 AATCATGCAAATAAACATGCAATTAAATATATAATCATGCAAATAATAATATATA
*
16341935 AATCAGGCAA
1 AATCATGCAA
16341945 TCAGATAAAT
Statistics
Matches: 197, Mismatches: 32, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
55 148 0.75
56 48 0.24
57 1 0.01
ACGTcount: A:0.51, C:0.12, G:0.08, T:0.29
Consensus pattern (55 bp):
AATCATGCAAATAAACATGCAATTAAATATATAATCATGCAAATAATAATATATA
Found at i:16343451 original size:25 final size:26
Alignment explanation
Indices: 16343403--16343456 Score: 83
Period size: 25 Copynumber: 2.1 Consensus size: 26
16343393 TGTTTACATG
**
16343403 ATTAATATATTTATTTGTGTGATT-T
1 ATTAATATATTTATTTGTACGATTAT
16343428 ATTAATATATTTATTTGTACGATTAT
1 ATTAATATATTTATTTGTACGATTAT
16343454 ATT
1 ATT
16343457 TAACTTGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 22 0.85
26 4 0.15
ACGTcount: A:0.31, C:0.02, G:0.09, T:0.57
Consensus pattern (26 bp):
ATTAATATATTTATTTGTACGATTAT
Found at i:16343516 original size:24 final size:24
Alignment explanation
Indices: 16343464--16343519 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
16343454 ATTTAACTTG
16343464 ATTGCATGATTATTAATATATATA
1 ATTGCATGATTATTAATATATATA
* *
16343488 ATTGCTTGATTATTAGTAT-TATTA
1 ATTGCATGATTATTAATATATA-TA
*
16343512 GTTGCATG
1 ATTGCATG
16343520 TTTGTTTGCA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 2 0.07
24 25 0.93
ACGTcount: A:0.32, C:0.05, G:0.14, T:0.48
Consensus pattern (24 bp):
ATTGCATGATTATTAATATATATA
Found at i:16343571 original size:20 final size:22
Alignment explanation
Indices: 16343525--16343574 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
16343515 GCATGTTTGT
*
16343525 TTGCATGATTAATATATTACTAT
1 TTGCATGATTAATATATTA-TAA
*
16343548 TTGCATTATT-ATATATT-TAA
1 TTGCATGATTAATATATTATAA
16343568 TTGCATG
1 TTGCATG
16343575 TTTATTTGCA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 8 0.33
22 7 0.29
23 9 0.38
ACGTcount: A:0.32, C:0.08, G:0.10, T:0.50
Consensus pattern (22 bp):
TTGCATGATTAATATATTATAA
Found at i:16343572 original size:55 final size:54
Alignment explanation
Indices: 16343496--16343651 Score: 208
Period size: 55 Copynumber: 2.8 Consensus size: 54
16343486 TAATTGCTTG
* *
16343496 ATTATTAGTAT-TATTAGTTGCATGTTTGTTTGCATGATTAATATATTACTATTTGC
1 ATTATTA-TATAT-TTAATTGCATGTTTATTTGCATGATT-ATATATTACTATTTGC
* *
16343552 ATTATTATATATTTAATTGCATGTTTATTTGCATGGTT-TATGAATTATTATTTGC
1 ATTATTATATATTTAATTGCATGTTTATTTGCATGATTATAT--ATTACTATTTGC
*
16343607 ATGATTATATATTTAATTGCATGTTTATTTGCATGATTATATATT
1 ATTATTATATATTTAATTGCATGTTTATTTGCATGATTATATATT
16343652 TAATAGCATA
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
53 3 0.03
54 3 0.03
55 73 0.81
56 11 0.12
ACGTcount: A:0.28, C:0.06, G:0.13, T:0.53
Consensus pattern (54 bp):
ATTATTATATATTTAATTGCATGTTTATTTGCATGATTATATATTACTATTTGC
Found at i:16343579 original size:20 final size:21
Alignment explanation
Indices: 16343525--16343579 Score: 51
Period size: 20 Copynumber: 2.6 Consensus size: 21
16343515 GCATGTTTGT
* *
16343525 TTGCATGATTAATATATTACTAT
1 TTGCATG-TTTATATATTA-TAA
16343548 TTGCAT-TATTATATATT-TAA
1 TTGCATGT-TTATATATTATAA
16343568 TTGCATGTTTAT
1 TTGCATGTTTAT
16343580 TTGCATGGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
20 12 0.43
21 2 0.07
22 8 0.29
23 6 0.21
ACGTcount: A:0.31, C:0.07, G:0.09, T:0.53
Consensus pattern (21 bp):
TTGCATGTTTATATATTATAA
Found at i:16343628 original size:20 final size:20
Alignment explanation
Indices: 16343603--16343772 Score: 61
Period size: 20 Copynumber: 9.3 Consensus size: 20
16343593 GAATTATTAT
16343603 TTGCATGATTATATATTTAA
1 TTGCATGATTATATATTTAA
16343623 TTGCATG--T-T-TA--T--
1 TTGCATGATTATATATTTAA
16343635 TTGCATGATTATATATTTAA
1 TTGCATGATTATATATTTAA
* **
16343655 TAGCAT-ATT-TAT-TTGCA
1 TTGCATGATTATATATTTAA
** * * *
16343672 -TGGTTTA-TATATTTTTAT
1 TTGCATGATTATATATTTAA
*
16343690 TTGCATGATTACATATTTAA
1 TTGCATGATTATATATTTAA
* **
16343710 TTGTATG-TT-TAT-TTGCA
1 TTGCATGATTATATATTTAA
* *
16343727 -TG-ATTATTAATATATTTAT
1 TTGCATGATT-ATATATTTAA
* *
16343746 TTGCATGACTATGTATTTAA
1 TTGCATGATTATATATTTAA
16343766 TTGCATG
1 TTGCATG
16343773 TCTAATTGCA
Statistics
Matches: 104, Mismatches: 27, Indels: 38
0.62 0.16 0.22
Matches are distributed among these distances:
12 7 0.07
14 2 0.02
15 3 0.03
16 11 0.11
17 11 0.11
18 12 0.12
19 11 0.11
20 43 0.41
21 4 0.04
ACGTcount: A:0.29, C:0.06, G:0.12, T:0.52
Consensus pattern (20 bp):
TTGCATGATTATATATTTAA
Found at i:16343640 original size:32 final size:32
Alignment explanation
Indices: 16343599--16343685 Score: 138
Period size: 32 Copynumber: 2.7 Consensus size: 32
16343589 TTATGAATTA
* *
16343599 TTATTTGCATGATTATATATTTAATTGCATGT
1 TTATTTGCATGATTATATATTTAATAGCATAT
16343631 TTATTTGCATGATTATATATTTAATAGCATAT
1 TTATTTGCATGATTATATATTTAATAGCATAT
*
16343663 TTATTTGCATGGTTTATATATTT
1 TTATTTGCAT-GATTATATATTT
16343686 TTATTTGCAT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
32 40 0.78
33 11 0.22
ACGTcount: A:0.29, C:0.06, G:0.11, T:0.54
Consensus pattern (32 bp):
TTATTTGCATGATTATATATTTAATAGCATAT
Found at i:16343646 original size:87 final size:87
Alignment explanation
Indices: 16343545--16343733 Score: 308
Period size: 87 Copynumber: 2.2 Consensus size: 87
16343535 AATATATTAC
* * *
16343545 TATTTGCATTATTATATATTTAATTGCATGTTTATTTGCATGGTTTATGA-ATTATTATTTGCAT
1 TATTTGCATGATTATATATTTAATAGCATATTTATTTGCATGGTTTAT-ATATTATTATTTGCAT
*
16343609 GATTATATATTTAATTGCATGTT
65 GATTACATATTTAATTGCATGTT
*
16343632 TATTTGCATGATTATATATTTAATAGCATATTTATTTGCATGGTTTATATATTTTTATTTGCATG
1 TATTTGCATGATTATATATTTAATAGCATATTTATTTGCATGGTTTATATATTATTATTTGCATG
*
16343697 ATTACATATTTAATTGTATGTT
66 ATTACATATTTAATTGCATGTT
16343719 TATTTGCATGATTAT
1 TATTTGCATGATTAT
16343734 TAATATATTT
Statistics
Matches: 95, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
86 1 0.01
87 94 0.99
ACGTcount: A:0.28, C:0.06, G:0.12, T:0.54
Consensus pattern (87 bp):
TATTTGCATGATTATATATTTAATAGCATATTTATTTGCATGGTTTATATATTATTATTTGCATG
ATTACATATTTAATTGCATGTT
Found at i:16343726 original size:32 final size:32
Alignment explanation
Indices: 16343685--16343881 Score: 153
Period size: 32 Copynumber: 6.4 Consensus size: 32
16343675 TTTATATATT
*
16343685 TTTATTTGCATGATTACATATTTAATTGTATG
1 TTTATTTGCATGATTATATATTTAATTGTATG
*
16343717 TTTATTTGCATG---AT-TA-TTAA---TATA
1 TTTATTTGCATGATTATATATTTAATTGTATG
* * *
16343741 TTTATTTGCATGACTATGTATTTAATTGCATG
1 TTTATTTGCATGATTATATATTTAATTGTATG
* * * * * *
16343773 TCTAATTGCATGAATAT-TAATTTATTTATTTG
1 TTTATTTGCATGATTATAT-ATTTAATTGTATG
* * *
16343805 TGTGA-TTGCATGATTATATATTTATTTGTATA
1 T-TTATTTGCATGATTATATATTTAATTGTATG
* *
16343837 TTTATTTGCATGGTTTATATATTTAATTGCATG
1 TTTATTTGCAT-GATTATATATTTAATTGTATG
16343870 TTTATTTGCATG
1 TTTATTTGCATG
16343882 GTTTACATTG
Statistics
Matches: 130, Mismatches: 22, Indels: 26
0.73 0.12 0.15
Matches are distributed among these distances:
24 15 0.12
27 6 0.05
28 4 0.03
29 5 0.04
31 3 0.02
32 67 0.52
33 30 0.23
ACGTcount: A:0.27, C:0.06, G:0.13, T:0.53
Consensus pattern (32 bp):
TTTATTTGCATGATTATATATTTAATTGTATG
Found at i:16343765 original size:56 final size:56
Alignment explanation
Indices: 16343630--16343804 Score: 219
Period size: 56 Copynumber: 3.1 Consensus size: 56
16343620 TAATTGCATG
* * * *
16343630 TTTATTTGCATGATTATATATTTAATAGCATATTTATTTGCATG-GT-TTATATATT
1 TTTATTTGCATGATTATATATTTAATTGCATGTTTATTTGCATGAATATTA-ATATA
* * *
16343685 TTTATTTGCATGATTACATATTTAATTGTATGTTTATTTGCATGATTATTAATATA
1 TTTATTTGCATGATTATATATTTAATTGCATGTTTATTTGCATGAATATTAATATA
* * * * *
16343741 TTTATTTGCATGACTATGTATTTAATTGCATGTCTAATTGCATGAATATTAATTTA
1 TTTATTTGCATGATTATATATTTAATTGCATGTTTATTTGCATGAATATTAATATA
16343797 TTTATTTG
1 TTTATTTG
16343805 TGTGATTGCA
Statistics
Matches: 104, Mismatches: 14, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
55 40 0.38
56 61 0.59
57 3 0.03
ACGTcount: A:0.29, C:0.06, G:0.11, T:0.53
Consensus pattern (56 bp):
TTTATTTGCATGATTATATATTTAATTGCATGTTTATTTGCATGAATATTAATATA
Found at i:16343858 original size:21 final size:20
Alignment explanation
Indices: 16343833--16343874 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
16343823 TATTTATTTG
*
16343833 TATATTTATTTGCATGGTTTA
1 TATATTTAATTGCAT-GTTTA
16343854 TATATTTAATTGCATGTTTA
1 TATATTTAATTGCATGTTTA
16343874 T
1 T
16343875 TTGCATGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.26, C:0.05, G:0.12, T:0.57
Consensus pattern (20 bp):
TATATTTAATTGCATGTTTA
Found at i:16343860 original size:33 final size:33
Alignment explanation
Indices: 16343810--16343886 Score: 111
Period size: 33 Copynumber: 2.4 Consensus size: 33
16343800 ATTTGTGTGA
* * *
16343810 TTGCAT-GATTATATATTTATTTGTATATTTAT
1 TTGCATGGTTTATATATTTAATTGCATATTTAT
*
16343842 TTGCATGGTTTATATATTTAATTGCATGTTTAT
1 TTGCATGGTTTATATATTTAATTGCATATTTAT
16343875 TTGCATGGTTTA
1 TTGCATGGTTTA
16343887 CATTGTAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 6 0.15
33 34 0.85
ACGTcount: A:0.25, C:0.05, G:0.14, T:0.56
Consensus pattern (33 bp):
TTGCATGGTTTATATATTTAATTGCATATTTAT
Found at i:16343898 original size:33 final size:33
Alignment explanation
Indices: 16343837--16343907 Score: 99
Period size: 33 Copynumber: 2.2 Consensus size: 33
16343827 TATTTGTATA
* *
16343837 TTTATTTGCATGGTTTATATATTTAATTGCATG
1 TTTATTTGCATGGTTTACATATTAAATTGCATG
16343870 TTTATTTGCATGGTTTACAT-TGTAAATTGCATG
1 TTTATTTGCATGGTTTACATAT-TAAATTGCATG
*
16343903 ATTAT
1 TTTAT
16343908 ATATTTAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 1 0.03
33 33 0.97
ACGTcount: A:0.25, C:0.07, G:0.15, T:0.52
Consensus pattern (33 bp):
TTTATTTGCATGGTTTACATATTAAATTGCATG
Found at i:16343922 original size:20 final size:19
Alignment explanation
Indices: 16343894--16343936 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
16343884 TTACATTGTA
* *
16343894 AATTGCATGATTATATATTT
1 AATTACATGATTAT-TAATT
16343914 AATTACATGATTATTAATT
1 AATTACATGATTATTAATT
16343933 AATT
1 AATT
16343937 TATTTGAGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.49
Consensus pattern (19 bp):
AATTACATGATTATTAATT
Found at i:16349317 original size:22 final size:22
Alignment explanation
Indices: 16349290--16349334 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
16349280 AAAAAACCAA
*
16349290 GTTGTTCTATATGATAATAAAT
1 GTTGTTCCATATGATAATAAAT
16349312 GTTGTTCCATATGATAATAAAT
1 GTTGTTCCATATGATAATAAAT
16349334 G
1 G
16349335 ATCCTTTGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.42
Consensus pattern (22 bp):
GTTGTTCCATATGATAATAAAT
Found at i:16349582 original size:1 final size:1
Alignment explanation
Indices: 16349576--16349630 Score: 56
Period size: 1 Copynumber: 55.0 Consensus size: 1
16349566 TGATATACAC
** * * * *
16349576 AAAAAAAAAGTAAAAAAATAAAAAAATAAAAAAATAAAAAAAAGAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
16349631 GAAGGAAAAC
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.89, C:0.00, G:0.04, T:0.07
Consensus pattern (1 bp):
A
Found at i:16349592 original size:9 final size:8
Alignment explanation
Indices: 16349578--16349630 Score: 74
Period size: 8 Copynumber: 6.6 Consensus size: 8
16349568 ATATACACAA
16349578 AAAAAAAGT
1 AAAAAAA-T
16349587 AAAAAAAT
1 AAAAAAAT
16349595 AAAAAAAT
1 AAAAAAAT
16349603 AAAAAAAT
1 AAAAAAAT
16349611 AAAAAAA-
1 AAAAAAAT
16349618 AGAAAAAA-
1 A-AAAAAAT
16349626 AAAAA
1 AAAAA
16349631 GAAGGAAAAC
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
7 5 0.12
8 31 0.72
9 7 0.16
ACGTcount: A:0.89, C:0.00, G:0.04, T:0.08
Consensus pattern (8 bp):
AAAAAAAT
Found at i:16349639 original size:12 final size:12
Alignment explanation
Indices: 16349576--16349633 Score: 66
Period size: 12 Copynumber: 5.0 Consensus size: 12
16349566 TGATATACAC
*
16349576 AAAAAAAAAGTA
1 AAAAAAAAAGAA
*
16349588 AAAAAATAA-AA
1 AAAAAAAAAGAA
*
16349599 AAATAAAAA-AA
1 AAAAAAAAAGAA
*
16349610 TAAAAAAAAGAA
1 AAAAAAAAAGAA
16349622 AAAAAAAAAGAA
1 AAAAAAAAAGAA
16349634 GGAAAACTTA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
11 17 0.45
12 21 0.55
ACGTcount: A:0.88, C:0.00, G:0.05, T:0.07
Consensus pattern (12 bp):
AAAAAAAAAGAA
Found at i:16349639 original size:16 final size:16
Alignment explanation
Indices: 16349578--16349630 Score: 72
Period size: 17 Copynumber: 3.2 Consensus size: 16
16349568 ATATACACAA
16349578 AAAAAAAGTAAAAAAAT
1 AAAAAAAG-AAAAAAAT
*
16349595 AAAAAAATAAAAAAAT
1 AAAAAAAGAAAAAAAT
16349611 AAAAAAAAGAAAAAAA-
1 -AAAAAAAGAAAAAAAT
16349627 AAAA
1 AAAA
16349631 GAAGGAAAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
15 4 0.12
16 8 0.24
17 21 0.64
ACGTcount: A:0.89, C:0.00, G:0.04, T:0.08
Consensus pattern (16 bp):
AAAAAAAGAAAAAAAT
Found at i:16351146 original size:42 final size:42
Alignment explanation
Indices: 16351084--16351596 Score: 624
Period size: 42 Copynumber: 12.1 Consensus size: 42
16351074 AGAATGATCT
* * *
16351084 CATTTTATTTTTTAAAAGTTTCAAAGCCTCAATTGTGGGGGAG
1 CATTTTA-TTTTTCAAAGTTTCAAAGCCTCAGTTATGGGGGAG
*
16351127 CATTTTATTTTTCAAAGTTTCAAAGCCTCAGTTATGGAGGAG
1 CATTTTATTTTTCAAAGTTTCAAAGCCTCAGTTATGGGGGAG
* *
16351169 CATTTTATTTTTCAAAGTTTCAAAGCCTCAATTATAGGGGAG
1 CATTTTATTTTTCAAAGTTTCAAAGCCTCAGTTATGGGGGAG
* * *
16351211 CAATTTATTTTTCAAAAGTTCCAAAGCCTCAGTTGTGGGGGAG
1 CATTTTATTTTTC-AAAGTTTCAAAGCCTCAGTTATGGGGGAG
*
16351254 CATTTTA-TTTTCAAAGTTTCAAAGCCTCAGCTATGGGGGAG
1 CATTTTATTTTTCAAAGTTTCAAAGCCTCAGTTATGGGGGAG
* *
16351295 CATTTT-TATTTTCAACAATTTCAAAGCCTCAGTTATGGAGGAG
1 CATTTTAT-TTTTCAA-AGTTTCAAAGCCTCAGTTATGGGGGAG
* * *
16351338 CATTTTATTTTTCAAAGTTTTAACGCCTCAATTATGGGGGAG
1 CATTTTATTTTTCAAAGTTTCAAAGCCTCAGTTATGGGGGAG
* * * *
16351380 TATTTTATTTTTCAAAAGTTCCAAAGCCTCAGTTGTTGGGGAG
1 CATTTTATTTTTC-AAAGTTTCAAAGCCTCAGTTATGGGGGAG
*
16351423 CATTTTATTTTT-AAAGTTTCAAAGCCTCAGCTATGGGGGAG
1 CATTTTATTTTTCAAAGTTTCAAAGCCTCAGTTATGGGGGAG
* * *
16351464 CATTTTA-TTTTCAACAATTTCAAAGCCTCAGTTGTGGGAGAG
1 CATTTTATTTTTCAA-AGTTTCAAAGCCTCAGTTATGGGGGAG
* * * * *
16351506 CATTTTA-TTTTCAACAGTTCCAAAGCCTTAATTGTGGGAGAG
1 CATTTTATTTTTCAA-AGTTTCAAAGCCTCAGTTATGGGGGAG
* * *
16351548 CATTTTATTTTTTAAATGTTTCAAAGCC-CTAGTTGTAGGGGAG
1 CATTTTATTTTTCAAA-GTTTCAAAGCCTC-AGTTATGGGGGAG
16351591 CATTTT
1 CATTTT
16351597 TCAAAAAAAA
Statistics
Matches: 409, Mismatches: 50, Indels: 22
0.85 0.10 0.05
Matches are distributed among these distances:
40 4 0.01
41 66 0.16
42 197 0.48
43 141 0.34
44 1 0.00
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.38
Consensus pattern (42 bp):
CATTTTATTTTTCAAAGTTTCAAAGCCTCAGTTATGGGGGAG
Found at i:16351389 original size:169 final size:168
Alignment explanation
Indices: 16351084--16351596 Score: 746
Period size: 169 Copynumber: 3.0 Consensus size: 168
16351074 AGAATGATCT
** * *
16351084 CATTTTATTTTTTAAAAGTTTCAAAGCCTCAATTGTGGGGGAGCATTTTATTTTTCAA-AGTTTC
1 CATTTTA--TTTTAAAAGTTTCAAAGCCTCAGCTATGGGGGAGCATTTTA-TTTTCAACAATTTC
*
16351148 AAAGCCTCAGTTATGGAGGAGCATTTTATTTTTCAAAGTTTCAAAGCCTCAATTATAGGGGAGCA
63 AAAGCCTCAGTTATGGAGGAGCATTTTATTTTTCAAAGTTTCAAAGCCTCAATTATGGGGGAGCA
* *
16351213 ATTTATTTTTCAAAAGTTCCAAAGCCTCAGTTGTGGGGGAG
128 TTTTATTTTTCAAAAGTTCCAAAGCCTCAGTTGTAGGGGAG
*
16351254 CATTTTATTTTCAAAGTTTCAAAGCCTCAGCTATGGGGGAGCATTTTTATTTTCAACAATTTCAA
1 CATTTTATTTTAAAAGTTTCAAAGCCTCAGCTATGGGGGAGCA-TTTTATTTTCAACAATTTCAA
* * *
16351319 AGCCTCAGTTATGGAGGAGCATTTTATTTTTCAAAGTTTTAACGCCTCAATTATGGGGGAGTATT
65 AGCCTCAGTTATGGAGGAGCATTTTATTTTTCAAAGTTTCAAAGCCTCAATTATGGGGGAGCATT
*
16351384 TTATTTTTCAAAAGTTCCAAAGCCTCAGTTGTTGGGGAG
130 TTATTTTTCAAAAGTTCCAAAGCCTCAGTTGTAGGGGAG
*
16351423 CATTTTATTTTTAAAGTTTCAAAGCCTCAGCTATGGGGGAGCATTTTATTTTCAACAATTTCAAA
1 CATTTTATTTTAAAAGTTTCAAAGCCTCAGCTATGGGGGAGCATTTTATTTTCAACAATTTCAAA
* * * * *
16351488 GCCTCAGTTGTGG-GAGAGCATTTTA-TTTTCAACAGTTCCAAAGCCTTAATTGTGGGAGAGCAT
66 GCCTCAGTTATGGAG-GAGCATTTTATTTTTCAA-AGTTTCAAAGCCTCAATTATGGGGGAGCAT
* * *
16351551 TTTATTTTTTAAATGTTTCAAAGCC-CTAGTTGTAGGGGAG
129 TTTATTTTTCAAAAGTTCCAAAGCCTC-AGTTGTAGGGGAG
16351591 CATTTT
1 CATTTT
16351597 TCAAAAAAAA
Statistics
Matches: 314, Mismatches: 24, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
167 9 0.03
168 146 0.46
169 152 0.48
170 7 0.02
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.38
Consensus pattern (168 bp):
CATTTTATTTTAAAAGTTTCAAAGCCTCAGCTATGGGGGAGCATTTTATTTTCAACAATTTCAAA
GCCTCAGTTATGGAGGAGCATTTTATTTTTCAAAGTTTCAAAGCCTCAATTATGGGGGAGCATTT
TATTTTTCAAAAGTTCCAAAGCCTCAGTTGTAGGGGAG
Found at i:16352398 original size:31 final size:31
Alignment explanation
Indices: 16352361--16352424 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
16352351 ATTGCATATT
*
16352361 TTGCATGGTTTATATATTATTATTTCCATGA
1 TTGCATGATTTATATATTATTATTTCCATGA
* *
16352392 TTGCATGATTTATGTATTATTATTTGCATGA
1 TTGCATGATTTATATATTATTATTTCCATGA
16352423 TT
1 TT
16352425 ATATATTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.08, G:0.14, T:0.53
Consensus pattern (31 bp):
TTGCATGATTTATATATTATTATTTCCATGA
Found at i:16352440 original size:20 final size:22
Alignment explanation
Indices: 16352391--16352446 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 22
16352381 TATTTCCATG
*
16352391 ATTGCATGATTTATGTATTATTA
1 ATTGCATGA-TTATATATTATTA
*
16352414 TTTGCATGATTATATA-T-TTA
1 ATTGCATGATTATATATTATTA
*
16352434 ATTGCATGTTTAT
1 ATTGCATGATTAT
16352447 TTGCATGATT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 14 0.48
21 1 0.03
22 6 0.21
23 8 0.28
ACGTcount: A:0.29, C:0.05, G:0.12, T:0.54
Consensus pattern (22 bp):
ATTGCATGATTATATATTATTA
Found at i:16352451 original size:55 final size:55
Alignment explanation
Indices: 16352392--16352674 Score: 342
Period size: 55 Copynumber: 5.2 Consensus size: 55
16352382 ATTTCCATGA
*
16352392 TTGCATGATTTATGTATTATTATTTGCATGATTATATATTTAATTGCATGTTTAT
1 TTGCATGATTTATATATTATTATTTGCATGATTATATATTTAATTGCATGTTTAT
* * * * * *
16352447 TTGCATGATTTATGTGTTATTAGTTGCATGATTATGTATTCAATTGTATGTTTAT
1 TTGCATGATTTATATATTATTATTTGCATGATTATATATTTAATTGCATGTTTAT
* * * * * *
16352502 TTGCATGACTAATATATTACTATTTTCATGATTATATA-TTAATTGTATATTTAT
1 TTGCATGATTTATATATTATTATTTGCATGATTATATATTTAATTGCATGTTTAT
*
16352556 TTGCAT-AGTTTATATATTTTTA-TTGCATGATTATATATTTAATTGCATGTTTAT
1 TTGCATGA-TTTATATATTATTATTTGCATGATTATATATTTAATTGCATGTTTAT
* * * *
16352610 TTG-ATGA-TTATTAATATTATTATTTGCATGATTATATAATTGATTGCATGTCTAA
1 TTGCATGATTTA-T-ATATTATTATTTGCATGATTATATATTTAATTGCATGTTTAT
16352665 TTGCATGATT
1 TTGCATGATT
16352675 ATTAATTTAT
Statistics
Matches: 193, Mismatches: 27, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
52 3 0.02
53 18 0.09
54 56 0.29
55 111 0.58
56 4 0.02
57 1 0.01
ACGTcount: A:0.29, C:0.06, G:0.13, T:0.53
Consensus pattern (55 bp):
TTGCATGATTTATATATTATTATTTGCATGATTATATATTTAATTGCATGTTTAT
Found at i:16352541 original size:22 final size:23
Alignment explanation
Indices: 16352499--16352542 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
16352489 ATTGTATGTT
16352499 TATTTGCATGACTAATATATTAC
1 TATTTGCATGACTAATATATTAC
* *
16352522 TATTTTCATGA-TTATATATTA
1 TATTTGCATGACTAATATATTA
16352543 ATTGTATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.34, C:0.09, G:0.07, T:0.50
Consensus pattern (23 bp):
TATTTGCATGACTAATATATTAC
Found at i:16352573 original size:21 final size:20
Alignment explanation
Indices: 16352547--16352609 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 20
16352537 ATATTAATTG
16352547 TATATTTATTTGCATAGTTTA
1 TATATTTATTTGCAT-GTTTA
* *
16352568 TATATTTTTATTGCATGATTA
1 TATATTTAT-TTGCATGTTTA
*
16352589 TATATTTAATTGCATGTTTA
1 TATATTTATTTGCATGTTTA
16352609 T
1 T
16352610 TTGATGATTA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
20 11 0.31
21 19 0.53
22 6 0.17
ACGTcount: A:0.29, C:0.05, G:0.10, T:0.57
Consensus pattern (20 bp):
TATATTTATTTGCATGTTTA
Found at i:16352602 original size:20 final size:20
Alignment explanation
Indices: 16352547--16352609 Score: 81
Period size: 20 Copynumber: 3.0 Consensus size: 20
16352537 ATATTAATTG
*
16352547 TATATTTATTTGCATAGTTTA
1 TATATTTAATTGCAT-GTTTA
* *
16352568 TATATTTTTATTGCATGATTA
1 TATA-TTTAATTGCATGTTTA
16352589 TATATTTAATTGCATGTTTA
1 TATATTTAATTGCATGTTTA
16352609 T
1 T
16352610 TTGATGATTA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
20 15 0.42
21 12 0.33
22 9 0.25
ACGTcount: A:0.29, C:0.05, G:0.10, T:0.57
Consensus pattern (20 bp):
TATATTTAATTGCATGTTTA
Found at i:16352611 original size:108 final size:110
Alignment explanation
Indices: 16352392--16352674 Score: 349
Period size: 108 Copynumber: 2.6 Consensus size: 110
16352382 ATTTCCATGA
* * *
16352392 TTGCATGATTTATGTATTATTATTTGCATGATTATATATTTAATTGCATGTTTATTTGCATGATT
1 TTGCATGATTAATATATTATTATTTGCATGATTATATATTTAATTGCATATTTATTTGCATGATT
* * * *
16352457 TATGTGTTATTAGTTGCATGATTATGTATTCAATTGTATGTTTAT
66 TATATATTATTAGTTGCATGATTATATATTCAATTGCATGTTTAT
* * * *
16352502 TTGCATGACTAATATATTACTATTTTCATGATTATATA-TTAATTGTATATTTATTTGCAT-AGT
1 TTGCATGATTAATATATTATTATTTGCATGATTATATATTTAATTGCATATTTATTTGCATGA-T
* *
16352565 TTATATATTTTTA-TTGCATGATTATATATTTAATTGCATGTTTAT
65 TTATATATTATTAGTTGCATGATTATATATTCAATTGCATGTTTAT
* * * * * *
16352610 TTG-ATGATTATTAATATTATTATTTGCATGATTATATAATTGATTGCATGTCTAATTGCATGAT
1 TTGCATGATTAAT-ATATTATTATTTGCATGATTATATATTTAATTGCATATTTATTTGCATGAT
16352674 T
65 T
16352675 ATTAATTTAT
Statistics
Matches: 147, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
107 7 0.05
108 56 0.38
109 50 0.34
110 34 0.23
ACGTcount: A:0.29, C:0.06, G:0.13, T:0.53
Consensus pattern (110 bp):
TTGCATGATTAATATATTATTATTTGCATGATTATATATTTAATTGCATATTTATTTGCATGATT
TATATATTATTAGTTGCATGATTATATATTCAATTGCATGTTTAT
Found at i:16352685 original size:55 final size:54
Alignment explanation
Indices: 16352392--16352739 Score: 302
Period size: 55 Copynumber: 6.3 Consensus size: 54
16352382 ATTTCCATGA
*
16352392 TTGCATGATTTATGTA-TTATTATTTGCATGATTATATATTTAATTGCATGTTTAT
1 TTGCATGA-TTAT-TATTTATTATTTGCATGATTATATAATTAATTGCATGTTTAT
* * * *
16352447 TTGCATGATTTATGT-GTTATTAGTTGCATGATTATGT-ATTCAATTGTATGTTTAT
1 TTGCATGA-TTAT-TATTTATTATTTGCATGATTATATAATT-AATTGCATGTTTAT
* * * * * *
16352502 TTGCATGACTAATATATTACTATTTTCATGATTATAT-ATTAATTGTATATTTAT
1 TTGCATGATTATTAT-TTATTATTTGCATGATTATATAATTAATTGCATGTTTAT
* *
16352556 TTGCATAGTTTATATATTT-TTA-TTGCATGATTATATATTTAATTGCATGTTTAT
1 TTGCAT-GATTAT-TATTTATTATTTGCATGATTATATAATTAATTGCATGTTTAT
* * *
16352610 TTG-ATGATTATTAATATTATTATTTGCATGATTATATAATTGATTGCATGTCTAA
1 TTGCATGATTATT-AT-TTATTATTTGCATGATTATATAATTAATTGCATGTTTAT
** * *
16352665 TTGCATGATTATTAATTTATTTATTTGTGTGATTGCATGATTATTAA-T--ATTTTTAT
1 TTGCATGATTATT-ATTTA-TTATTTGCATGATT--AT-ATAATTAATTGCATGTTTAT
16352721 TTGCATGATTATATATTTA
1 TTGCATGATTAT-TATTTA
16352740 ATTGCATTGT
Statistics
Matches: 244, Mismatches: 32, Indels: 33
0.79 0.10 0.11
Matches are distributed among these distances:
51 1 0.00
52 7 0.03
53 18 0.07
54 45 0.18
55 114 0.47
56 49 0.20
57 1 0.00
58 3 0.01
59 6 0.02
ACGTcount: A:0.29, C:0.05, G:0.12, T:0.53
Consensus pattern (54 bp):
TTGCATGATTATTATTTATTATTTGCATGATTATATAATTAATTGCATGTTTAT
Found at i:16352700 original size:32 final size:32
Alignment explanation
Indices: 16352664--16352811 Score: 131
Period size: 32 Copynumber: 4.9 Consensus size: 32
16352654 TGCATGTCTA
16352664 ATTGCATGATTATTAATTTATTTATTTGTGTG
1 ATTGCATGATTATTAATTTATTTATTTGTGTG
*
16352696 ATTGCATGATTATTAA--TA--T-TTT-TAT-
1 ATTGCATGATTATTAATTTATTTATTTGTGTG
* *
16352721 -TTGCATGATTA-TATATTTAATTGCA-TTGT-TA
1 ATTGCATGATTATTA-ATTT-ATT-TATTTGTGTG
*
16352752 ATTGCATGATTATTAATTAATTTATTTGTGTG
1 ATTGCATGATTATTAATTTATTTATTTGTGTG
*
16352784 ACTTG-ATGATTATTAATATATTTATTTG
1 A-TTGCATGATTATTAATTTATTTATTTG
16352812 CATAGTTATT
Statistics
Matches: 94, Mismatches: 7, Indels: 30
0.72 0.05 0.23
Matches are distributed among these distances:
23 2 0.02
24 12 0.13
26 3 0.03
27 4 0.04
28 1 0.01
30 6 0.06
31 8 0.09
32 53 0.56
33 5 0.05
ACGTcount: A:0.29, C:0.04, G:0.13, T:0.54
Consensus pattern (32 bp):
ATTGCATGATTATTAATTTATTTATTTGTGTG
Found at i:16352725 original size:88 final size:88
Alignment explanation
Indices: 16352610--16352814 Score: 333
Period size: 88 Copynumber: 2.3 Consensus size: 88
16352600 GCATGTTTAT
* *
16352610 TTGATGATTATTAATATTATTATTTGCATGATTATATAATTGATTGCA-TGTCTAATTGCATGAT
1 TTGATGATTATTAATATTTTTATTTGCATGATTATATAATTAATTGCATTGT-TAATTGCATGAT
*
16352674 TATTAATTTATTTATTTGTGTGA-
65 TATTAATTAATTTATTTGTGTGAC
*
16352697 TTGCATGATTATTAATATTTTTATTTGCATGATTATATATTTAATTGCATTGTTAATTGCATGAT
1 TTG-ATGATTATTAATATTTTTATTTGCATGATTATATAATTAATTGCATTGTTAATTGCATGAT
16352762 TATTAATTAATTTATTTGTGTGAC
65 TATTAATTAATTTATTTGTGTGAC
*
16352786 TTGATGATTATTAATATATTTATTTGCAT
1 TTGATGATTATTAATATTTTTATTTGCAT
16352815 AGTTATTTAT
Statistics
Matches: 110, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
87 3 0.03
88 101 0.92
89 6 0.05
ACGTcount: A:0.30, C:0.05, G:0.13, T:0.53
Consensus pattern (88 bp):
TTGATGATTATTAATATTTTTATTTGCATGATTATATAATTAATTGCATTGTTAATTGCATGATT
ATTAATTAATTTATTTGTGTGAC
Found at i:16352739 original size:20 final size:23
Alignment explanation
Indices: 16352696--16352746 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
16352686 TATTTGTGTG
16352696 ATTGCATGATTATTAATATTTTTA
1 ATTGCATGATTATTAATA-TTTTA
*
16352720 TTTGCATGATTA-T-ATA-TTTA
1 ATTGCATGATTATTAATATTTTA
16352740 ATTGCAT
1 ATTGCAT
16352747 TGTTAATTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 10 0.40
22 3 0.12
23 1 0.04
24 11 0.44
ACGTcount: A:0.31, C:0.06, G:0.10, T:0.53
Consensus pattern (23 bp):
ATTGCATGATTATTAATATTTTA
Found at i:16352746 original size:163 final size:162
Alignment explanation
Indices: 16352392--16352746 Score: 382
Period size: 163 Copynumber: 2.2 Consensus size: 162
16352382 ATTTCCATGA
* *
16352392 TTGCATGATTTATGTATTATTATTTGCATGATTATATATTTAATTGCATGTTTATTTGCATGATT
1 TTGCATGA-TTATATATT-TTAATTGCATGATTATATATTTAATTGCATGTTTATTTGCATGATT
* * * * * *
16352457 TATGTGTTATTAGTTGCATGATTATGTATTCAATTGTATGTTTATTTGCATGACTAATATATTAC
64 TATATATTATTAGTTGCATGATTATATATTCAATTGCATGTCTAATTGCATGACTAATATATTAC
* *
16352522 TATTTTCATGATTATATATTAATTGTATATTTAT
129 TATTTTCATGATTACATATTAATTATATATTTAT
* *
16352556 TTGCATAGTTTATATATTTTTATTGCATGATTATATATTTAATTGCATGTTTATTTG-ATGA-TT
1 TTGCAT-GATTATATATTTTAATTGCATGATTATATATTTAATTGCATGTTTATTTGCATGATTT
* * * *
16352619 ATTAATATTATTATTTGCATGATTATATAATT-GATTGCATGTCTAATTGCATGATTATTA-ATT
65 A-T-ATATTATTAGTTGCATGATTATAT-ATTCAATTGCATGTCTAATTGCATGACTAATATA-T
* * * *
16352682 TATTTATTTGT-GTGATTGCATGATT-ATTAATATTTTTAT
126 TA-CTATTT-TCATGATTACAT-ATTAATT-ATATATTTAT
16352721 TTGCATGATTATATA-TTTAATTGCAT
1 TTGCATGATTATATATTTTAATTGCAT
16352747 TGTTAATTGC
Statistics
Matches: 160, Mismatches: 22, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
161 3 0.02
162 6 0.04
163 92 0.57
164 40 0.25
165 19 0.12
ACGTcount: A:0.29, C:0.06, G:0.12, T:0.53
Consensus pattern (162 bp):
TTGCATGATTATATATTTTAATTGCATGATTATATATTTAATTGCATGTTTATTTGCATGATTTA
TATATTATTAGTTGCATGATTATATATTCAATTGCATGTCTAATTGCATGACTAATATATTACTA
TTTTCATGATTACATATTAATTATATATTTAT
Done.