Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25818110
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 67000 characters in sequence are not A, C, G, or T
File 86 of 127
Found at i:16352826 original size:88 final size:85
Alignment explanation
Indices: 16352610--16352847 Score: 322
Period size: 88 Copynumber: 2.7 Consensus size: 85
16352600 GCATGTTTAT
*
16352610 TTGATGATTATTAATATTATTATTTGCATGATTATATAATTGATTGCA-TGTCTAATTGCATGAT
1 TTGATGATTATTAATATT-TTATTTGCATGATTATAT-ATTTATTGCATTGT-TAATTGCATGAT
*
16352674 TATTAATTTATTTATTTGTGTGA
63 TATTAATTAATTTATTTGTGTGA
16352697 TTGCATGATTATTAATATTTTTATTTGCATGATTATATATTTAATTGCATTGTTAATTGCATGAT
1 TTG-ATGATTATTAATA-TTTTATTTGCATGATTATATATTT-ATTGCATTGTTAATTGCATGAT
16352762 TATTAATTAATTTATTTGTGTGA
63 TATTAATTAATTTATTTGTGTGA
* * *
16352785 CTTGATGATTATTAATATATTTATTTGCAT-AGTTATTTATTTATT-TATTATT-ATTGCATGAT
1 -TTGATGATTATTAATAT-TTTATTTGCATGA-TTATATATTTATTGCATTGTTAATTGCATGAT
16352847 T
63 T
16352848 TTATATTTAT
Statistics
Matches: 139, Mismatches: 5, Indels: 16
0.87 0.03 0.10
Matches are distributed among these distances:
85 11 0.08
86 5 0.04
87 11 0.08
88 104 0.75
89 8 0.06
ACGTcount: A:0.29, C:0.05, G:0.12, T:0.54
Consensus pattern (85 bp):
TTGATGATTATTAATATTTTATTTGCATGATTATATATTTATTGCATTGTTAATTGCATGATTAT
TAATTAATTTATTTGTGTGA
Found at i:16352872 original size:19 final size:19
Alignment explanation
Indices: 16352835--16352873 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
16352825 TTATTTATTA
* *
16352835 TTATTGCATGATTTTATAT
1 TTATTGCATGATATGATAT
16352854 TTATTGCATGATATGATAT
1 TTATTGCATGATATGATAT
16352873 T
1 T
16352874 ATATGTTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.28, C:0.05, G:0.13, T:0.54
Consensus pattern (19 bp):
TTATTGCATGATATGATAT
Found at i:16352882 original size:25 final size:24
Alignment explanation
Indices: 16352842--16352902 Score: 81
Period size: 24 Copynumber: 2.5 Consensus size: 24
16352832 TTATTATTGC
*
16352842 ATGATTTTATATTTATTGCATGAT
1 ATGATATTATATTTATTGCATGAT
16352866 ATGATATTATATGTTATTGCATGAT
1 ATGATATTATAT-TTATTGCATGAT
16352891 -T-AGTATTATATT
1 ATGA-TATTATATT
16352903 CGAATGATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
23 2 0.06
24 20 0.59
25 12 0.35
ACGTcount: A:0.31, C:0.03, G:0.13, T:0.52
Consensus pattern (24 bp):
ATGATATTATATTTATTGCATGAT
Found at i:16353028 original size:20 final size:20
Alignment explanation
Indices: 16353005--16353066 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
16352995 GATTTTATGA
16353005 TTATATATTTGCATGATATT
1 TTATATATTTGCATGATATT
*
16353025 TTATAT-TATTGCATGATA-A
1 TTATATAT-TTGCATGATATT
* *
16353044 TTAGTATATTTACATGACATT
1 TTA-TATATTTGCATGATATT
16353065 TT
1 TT
16353067 TGCATGAATG
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
19 4 0.12
20 27 0.79
21 3 0.09
ACGTcount: A:0.32, C:0.06, G:0.10, T:0.52
Consensus pattern (20 bp):
TTATATATTTGCATGATATT
Found at i:16353144 original size:25 final size:24
Alignment explanation
Indices: 16353116--16353166 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 24
16353106 ACATGATATT
16353116 TGGTATGATTTATAATATTT-TTGCA
1 TGGTATGA-TT-TAATATTTATTGCA
16353141 TGGTATGATTTAATATTTATTGCA
1 TGGTATGATTTAATATTTATTGCA
16353165 TG
1 TG
16353167 ATTGCTTGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 8 0.32
24 9 0.36
25 8 0.32
ACGTcount: A:0.27, C:0.04, G:0.18, T:0.51
Consensus pattern (24 bp):
TGGTATGATTTAATATTTATTGCA
Found at i:16356915 original size:144 final size:144
Alignment explanation
Indices: 16356633--16356918 Score: 307
Period size: 144 Copynumber: 2.0 Consensus size: 144
16356623 TAAAATATGA
* * * * * * *
16356633 AAAGTTTCGTTAAAATCTGACCTCGAGAAGGTCAAATTACAAAATTACCCTTAAATGGTATTTTG
1 AAAGTTTCATGAAAAACTAACCTCAAAAAGGTCAAATTACAAAATTACCCTTAAATGGTATTCTG
* * *
16356698 GAAATTTCACACGTCTTGAGATGCTGCAATGGTTTTGAATGTATAAAAAATCATCAAATATCTTA
66 GAAATTTCACACGTCTTAAGATGCTGCAATGGTTTTAAATGTATAAAAAATCATCAAATATCATA
*
16356763 AAAGCATGATCTAG
131 AAACCATGATCTAG
*
16356777 AAAGTTTCATGAAAAACTAACCTCAAAAAGGTCAAATTACAAAATTTCCCTTAAA-GTGTATTCT
1 AAAGTTTCATGAAAAACTAACCTCAAAAAGGTCAAATTACAAAATTACCCTTAAATG-GTATTCT
* * * *
16356841 -GATAATTTCACACCT-TCTAAGATG-TGATCAA-GGTTTTTAAATTTCT-AAAAATGATCAAAT
65 GGA-AATTTCACACGTCT-TAAGATGCTG--CAATGG-TTTTAAATGTATAAAAAATCATCAAAT
*
16356901 AAT-ATCAAACCATGATCT
125 -ATCATAAAACCATGATCT
16356919 TGAGCATTTC
Statistics
Matches: 118, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
143 6 0.05
144 98 0.83
145 14 0.12
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.32
Consensus pattern (144 bp):
AAAGTTTCATGAAAAACTAACCTCAAAAAGGTCAAATTACAAAATTACCCTTAAATGGTATTCTG
GAAATTTCACACGTCTTAAGATGCTGCAATGGTTTTAAATGTATAAAAAATCATCAAATATCATA
AAACCATGATCTAG
Found at i:16357046 original size:811 final size:810
Alignment explanation
Indices: 16355669--16357281 Score: 1758
Period size: 811 Copynumber: 2.0 Consensus size: 810
16355659 CAAAGATGTG
* * *
16355669 ATTTTTAAAGCTCTTGGATCAAGGGAAAAGACCATTTTGCCTTTAACACAAAGTTTTCGTTCTTT
1 ATTTTTAAAGCTCTTAGATCAAGGGAAAAGACCATTTTGCCTCTAACACAAAGTTTTCGGTCTTT
** *
16355734 AGGCCATTTTCTTGAAAATTGATGCTCGCATGCTCTTTTTTTATTTTAAAACACAAAAAATCATG
66 AGGCCATTTTCTTGAAAATCAATGCTCGCATGCTCTTTTTTTATTTTAAAACACAAAAAATCACG
* * * * * *
16355799 AAATAATATTGAACTAAAATCTAGAATGTTTTGTCAAAATTTGACCTTAGGAAGGTCAAATTACA
131 AAATAATATAGAACTAAAATATAGAAAGTTTCGTCAAAATCTGACCTGAGGAAGGTCAAATTACA
* * * * *
16355864 AAATTACCCATAAGGGGTACTTTGGTAATTAACACTTTATGAGGTGCTACTATAGTTTTGAATGC
196 AAATTACCCATAAAGGGTACTTTGGAAATTAACACTCTATGAGATGCTACAATAGTTTTGAATGC
* * * ***
16355929 ACCAAAAATCATCAAATATTTGAAATGCATGATTTGAAAAGTTTTGCAAAAAAACAACCTTGGGA
261 ACAAAAAATCATCAAATATTTGAAAAGCATGATTAGAAAAGTTTTGCAAAAAAACAACCTTCAAA
* * *
16355994 AACTCAAATTACAAAAACACCTCAAAGGGGTATTTTGGTAATTTCACACATTCTAAGGTGCAATC
326 AACTCAAATTACAAAAACACCTCAAAGGGGTATTCTGATAATTTCACACATTCTAAGATGCAATC
* *
16356059 AAGGTTTTCAAATTTGTAAAAAGCACCAAATAATATCAAATCATGATTTGGAGCATTTCATGAAA
391 AAGGTTTTCAAATTTCTAAAAAGCACCAAATAATATCAAACCATGATTTGGAGCATTTCATGAAA
* *
16356124 TTTAGACCTTGGGAAAGTCAATTTACGAAAACACACCTAAGAGTATTTTTGTAATTTCACATCTT
456 TTTAGACATTGGGAAAGTCAAATTACGAAAACACACCTAAGAGTATTTTTGTAATTTCACATCTT
* * * * *
16356189 TCAAGGTATGATTTGAGTTTTTAATGCATAAAAAATCCTAAAAAAAA-TCAATTATGAGCT-TAA
521 TCAAGGTATGACTTGAGCTTTTAATACATAAAAAATCCTAAAAAAAATTCAATTATGAGATGGAA
* * * ** * *
16356252 ATTTTTACAAAAATTTGACTTT-GAAAAGGTC-AATTATGAAAATAC-CTTTAA-AGGGTATTTT
586 ATTTTCACAAAAA-TTCAATTTCGAAAA-GTCAAATTACAAAAATACAC-CTAACA-AGTATTTT
* *
16356313 CATAATTTTACCCTTCTCAAAATACAATCAAGGGTTTTAGTGGTTCAAAATCACAAATTTC-GAT
647 CATAA-TTTACCATTCTCAAAATACAATCAAGGGTTTTAGTGCTTCAAAATCACAAATTTCAG-T
* * *
16356377 GTTAATCCACATTAATTCCTATTTAATTGTCACAAA-TCATCCAAGGGTCTAAAATTCACCCTTG
710 GTTAATCCACATTAATTCCAATTTAATTGTCACAAATTCATACAAGGGTCCAAAATTCACCCTTG
*
16356441 TTTTTGTTTCAAGGAGCAAA-TTTCACCGTTGGATC
775 TTTTTGTTTCAAGGAGAAAACTTTCACCGTTGGATC
* * * * *
16356476 ATTTTTAAAGCTTTTAGAT-AGAGTGAAAAGACCATTTTAGCC-CTGATACAAAGTTTTTGGTCT
1 ATTTTTAAAGCTCTTAGATCA-AGGGAAAAGACCATTTT-GCCTCTAACACAAAGTTTTCGGTCT
** * * * *
16356539 TTAGGCCATTTTCTTGAAAATCAATGCTCTTATG-TTTATACCTTTTTATTTTAAAGCACCAAAC
64 TTAGGCCATTTTCTTGAAAATCAATGCTCGCATGCTCT-T---TTTTTATTTTAAAACACAAAAA
* *
16356603 ATCACGGAATAATATAGATA-TAAAATAT-GAAAAGTTTCGTTAAAATCTGACCTCGA-GAAGGT
125 ATCACGAAATAATATAGA-ACTAAAATATAG-AAAGTTTCGTCAAAATCTGACCT-GAGGAAGGT
* * * * * *
16356665 CAAATTACAAAATTACCCTTAAATGGTATTTTGGAAATTTCACACGTCT-TGAGATGCTGCAATG
187 CAAATTACAAAATTACCCATAAAGGGTACTTTGGAAA-TTAACAC-TCTATGAGATGCTACAATA
* * *
16356729 GTTTTGAATGTATAAAAAATCATCAAATATCTT-AAAAGCATGATCTAG-AAAG-TTT-CATGAA
250 GTTTTGAATGCACAAAAAATCATCAAATAT-TTGAAAAGCATGAT-TAGAAAAGTTTTGCA-AAA
* * * *
16356790 AAACTAACC-TCAAAAAGGTCAAATTACAAAATTTC-CCTTAAA-GTGTATTCTGATAATTTCAC
312 AAAC-AACCTTCAAAAA-CTCAAATTACAAAA--ACACCTCAAAGGGGTATTCTGATAATTTCAC
* ** * *
16356852 ACCTTCTAAGATGTGATCAAGGTTTTTAAATTTCTAAAAATG-ATCAAATAATATCAAACCATGA
373 ACATTCTAAGATGCAATCAAGGTTTTCAAATTTCTAAAAA-GCACCAAATAATATCAAACCATGA
* * * *
16356916 TCTT-GAGCATTTCATGAAATTCTA-ACATTGGGAAGGTCAAATTATGAAAATAC-CATTAA-AG
437 T-TTGGAGCATTTCATGAAATT-TAGACATTGGGAAAGTCAAATTACGAAAACACAC-CTAAGA-
* * *
16356977 GTATTTTTTGTAATTTCACA-CTTTCTAAGGTGTGAACTTG-GCTTTTAATATATCAAAAATCCT
498 GTA-TTTTTGTAATTTCACATCTTTC-AAGGTATG-ACTTGAGCTTTTAATACATAAAAAATCCT
* * ** *
16357040 -AAAAAAATTCAATTATGATATGGATATTTTCATGAAAATTCAATTTCGAGAAGTCTAAATTACA
560 AAAAAAAATTCAATTATGAGATGGAAATTTTCACAAAAATTCAATTTCGAAAAGTC-AAATTACA
** ** * * *
16357104 AAAATACACCTAACAAGTATTTTGGTAATTTACCATTCTTGAAGTGCAATCAAGGTTTTTAGTGC
624 AAAATACACCTAACAAGTATTTTCATAATTTACCATTCTCAAAATACAATCAAGGGTTTTAGTGC
* * * ** * *
16357169 TTCAAAATCACAAATTTCAGTTTTAATTCGCATTGGTTCCAATTTGATTGTCACAAATTTATACA
689 TTCAAAATCACAAATTTCAGTGTTAATCCACATTAATTCCAATTTAATTGTCACAAATTCATACA
*
16357234 AGGGTCCAAAATTCACCTTTGTTTTTGTTTCAAGGAGAAAACTTTCAC
754 AGGGTCCAAAATTCACCCTTGTTTTTGTTTCAAGGAGAAAACTTTCAC
16357282 ACTTGCATCA
Statistics
Matches: 664, Mismatches: 106, Indels: 64
0.80 0.13 0.08
Matches are distributed among these distances:
806 3 0.00
807 80 0.12
808 3 0.00
809 3 0.00
810 113 0.17
811 208 0.31
812 79 0.12
813 98 0.15
814 69 0.10
815 8 0.01
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.35
Consensus pattern (810 bp):
ATTTTTAAAGCTCTTAGATCAAGGGAAAAGACCATTTTGCCTCTAACACAAAGTTTTCGGTCTTT
AGGCCATTTTCTTGAAAATCAATGCTCGCATGCTCTTTTTTTATTTTAAAACACAAAAAATCACG
AAATAATATAGAACTAAAATATAGAAAGTTTCGTCAAAATCTGACCTGAGGAAGGTCAAATTACA
AAATTACCCATAAAGGGTACTTTGGAAATTAACACTCTATGAGATGCTACAATAGTTTTGAATGC
ACAAAAAATCATCAAATATTTGAAAAGCATGATTAGAAAAGTTTTGCAAAAAAACAACCTTCAAA
AACTCAAATTACAAAAACACCTCAAAGGGGTATTCTGATAATTTCACACATTCTAAGATGCAATC
AAGGTTTTCAAATTTCTAAAAAGCACCAAATAATATCAAACCATGATTTGGAGCATTTCATGAAA
TTTAGACATTGGGAAAGTCAAATTACGAAAACACACCTAAGAGTATTTTTGTAATTTCACATCTT
TCAAGGTATGACTTGAGCTTTTAATACATAAAAAATCCTAAAAAAAATTCAATTATGAGATGGAA
ATTTTCACAAAAATTCAATTTCGAAAAGTCAAATTACAAAAATACACCTAACAAGTATTTTCATA
ATTTACCATTCTCAAAATACAATCAAGGGTTTTAGTGCTTCAAAATCACAAATTTCAGTGTTAAT
CCACATTAATTCCAATTTAATTGTCACAAATTCATACAAGGGTCCAAAATTCACCCTTGTTTTTG
TTTCAAGGAGAAAACTTTCACCGTTGGATC
Found at i:16359129 original size:650 final size:650
Alignment explanation
Indices: 16357862--16359277 Score: 1970
Period size: 650 Copynumber: 2.2 Consensus size: 650
16357852 CAAGTTATGA
* * * * *
16357862 ATTTTGGTAAATTTTACCCTTCTTAAAGGGCAATCACGATTTTTAGTACTTCAAAATCACAAATT
1 ATTTTGGT-AATTTTACCATTCTTAAAGTGCAATCAAGGTTTTTAGTGCTTCAAAATCACAAATT
* *
16357927 TCATTCTTAATCCATATTGGTTCCAATTTGATTGTCACAAATTCATCAAGATTCTCATATTCAAT
65 TCAATCTTAATCCACATTGGTTCCAATTTGATTGTCACAAATTCATCAAGATTCTCATATTCAAT
* *
16357992 TTTGTGATTTTAAAGCACCAAAAATAATGAAATAATATGGAACTAAAAGCCAACATTTAGAAAGT
130 TTTGTGATTTTAAAGCACCAAAAATAATGAAATAATATGGAACTAAAAGACAACATTGAGAAAGT
** * * * * *
16358057 CAAATGATGAAATTACCACTAAAGGGTATTTTGGTAATTTCACCCTCTCAAGGTGTTGCCATGGT
195 CAAATGACAAAATTACCACTAAAGGGTAGTTTAGTAATTTCACCCTATCAAGGTGCTACCATGGT
* * *
16358122 TTTGAATGCATAAAAAAATCATCCAATATTTTAAAAGCATGATCTAGAAAGTTTTACGAAAAATC
260 TATGAATGCATAAAAAAATCATCAAATATTTTAAAAGCATGATCTAGAAAGTTTCACGAAAAATC
* *
16358187 ATTCTAAAAAAGGTCAAATTATGAAATTACCCTTAAAAGGTATTTTGGTAATTTCACACCTTTCA
325 ATCCTAAAAAAGGTCAAATTATGAAATTACCCTTAAAAGGTATTTTGGTAATTTCACACCTTCCA
* * *
16358252 AGATGGGATCAAGGTTTTCAAATTTTTAAAACTCATCAAATACAATCAAAACAAGATCTAGAGTG
390 AGATGCGATCAAGGTTTTCAAATCTTTAAAAATCATCAAATACAATCAAAACAAGATCTAGAGTG
** * * *
16358317 TTTTGTAAAATTTTGACATTGAAAAGTTCAAATTATGAAAATACCCCTAAGGGTATTTTGTAGTT
455 TTTCATAAAATTTTGACATTGAAAAGGTCAAATTATGAAAATACCACTAAAGGTATTTTGTAGTT
*
16358382 TCACACATTCCAAGGTGTGATATGGGTTTTTAATGCATCAAAAACTCTAAAAAAAAATTCAATTA
520 TCACACATTCCAAGGTGTGATATGGGTTTTTAATGCATCAAAAAATCTAAAAAAAAATTCAATTA
* *
16358447 CAATCTGGATATTTTTACGAAATTCAACTTCGTGAAGTCCTAATTACGAAAATACACCTAAAGGT
585 CAATCTGAATATTTTTACGAAATTCAACTTCGTGAAGTCCTAATTACAAAAATACACCTAAAGGT
16358512 T
650 T
* * *
16358513 ATTTTGGTAATTTTACCATTCTCAAAGTGCAATCAAGGTTTTTAGTGTTTTAAAATCACAAATTT
1 ATTTTGGTAATTTTACCATTCTTAAAGTGCAATCAAGGTTTTTAGTGCTTCAAAATCACAAATTT
* * * * *
16358578 CAATCTTAATCCACATAT-GTACCAATTTGATTGTCAGAAATTCATTAAGATTCTGATGTT-AAT
66 CAATCTTAATCCACAT-TGGTTCCAATTTGATTGTCACAAATTCATCAAGATTCTCATATTCAA-
* ** * * *
16358641 TTTTGTGATTTTAAA-CTACCAAAAATAATGAAATAATATGGAACTAAAATATGACCTTGGGAAG
129 TTTTGTGATTTTAAAGC-ACCAAAAATAATGAAATAATATGGAACTAAAAGACAACATTGAGAAA
* * * **
16358705 GTTAAATGACAAAATTACTAC-AGAGGGTAGTTTAGTAATTTCACACCTATTGAGGTGCTACCAT
193 GTCAAATGACAAAATTACCACTAAAGGGTAGTTTAGTAATTTCAC-CCTATCAAGGTGCTACCAT
* * *
16358769 GGTTATGAATGTAT-AAAAAATCATTAAATATTTTAAAAGTATGAT-TAAGAAAGTTTCACGAAA
257 GGTTATGAATGCATAAAAAAATCATCAAATATTTTAAAAGCATGATCT-AGAAAGTTTCACGAAA
* * * *
16358832 AATTGATCCT-GAAAAGGTCAAA-TATGAAATTA-CCTTAAAAAGGTGTTTTGGTAGTTTCACAC
321 AA-TCATCCTAAAAAAGGTCAAATTATGAAATTACCCTT-AAAAGGTATTTTGGTAATTTCACAC
* * * *
16358894 CTTCCATGGTGCGATCAAGGTTTTCAAATCTTTAAAAATCATCAAATACTATCAAAACATGATCT
384 CTTCCAAGATGCGATCAAGGTTTTCAAATCTTTAAAAATCATCAAATACAATCAAAACAAGATCT
* * *
16358959 AGAGTGTTTCATGAAATTTTGACATTGGAAAGGTCAAATTGTGAAAATACCACTAAAGGTACTTT
449 AGAGTGTTTCATAAAATTTTGACATTGAAAAGGTCAAATTATGAAAATACCACTAAAGGTA-TTT
* *
16359024 TGTAGTTTCACACCTTTCAAGGTGTGATATGGGTTTTTAATGCATCAAAAAATCT-AAAAAAAAT
513 TGTAGTTTCACACATTCCAAGGTGTGATATGGGTTTTTAATGCATCAAAAAATCTAAAAAAAAAT
* * **
16359088 TCAATTACGATCTGAATATTTTTCAGGAAAGTTTGACTTCGTGAAGTCCTAATTACAAAAATACA
578 TCAATTACAATCTGAATATTTTT-ACGAAA-TTCAACTTCGTGAAGTCCTAATTACAAAAATACA
16359153 CCTAAAGGTT
641 CCTAAAGGTT
* * *
16359163 AATTTGGTAATTTTACCAATCTTAAAGTGCAATCAAGGTTTTTAATGCTTCAAAATCACAAATTT
1 ATTTTGGTAATTTTACCATTCTTAAAGTGCAATCAAGGTTTTTAGTGCTTCAAAATCACAAATTT
* *
16359228 TAATCTTAATCCACATTGGTTCCAATTTGATTTTCACAAATTCATACAAG
66 CAATCTTAATCCACATTGGTTCCAATTTGATTGTCACAAATTCAT-CAAG
16359278 GGTCCAATAT
Statistics
Matches: 671, Mismatches: 82, Indels: 24
0.86 0.11 0.03
Matches are distributed among these distances:
647 4 0.01
648 174 0.26
649 140 0.21
650 341 0.51
651 12 0.02
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (650 bp):
ATTTTGGTAATTTTACCATTCTTAAAGTGCAATCAAGGTTTTTAGTGCTTCAAAATCACAAATTT
CAATCTTAATCCACATTGGTTCCAATTTGATTGTCACAAATTCATCAAGATTCTCATATTCAATT
TTGTGATTTTAAAGCACCAAAAATAATGAAATAATATGGAACTAAAAGACAACATTGAGAAAGTC
AAATGACAAAATTACCACTAAAGGGTAGTTTAGTAATTTCACCCTATCAAGGTGCTACCATGGTT
ATGAATGCATAAAAAAATCATCAAATATTTTAAAAGCATGATCTAGAAAGTTTCACGAAAAATCA
TCCTAAAAAAGGTCAAATTATGAAATTACCCTTAAAAGGTATTTTGGTAATTTCACACCTTCCAA
GATGCGATCAAGGTTTTCAAATCTTTAAAAATCATCAAATACAATCAAAACAAGATCTAGAGTGT
TTCATAAAATTTTGACATTGAAAAGGTCAAATTATGAAAATACCACTAAAGGTATTTTGTAGTTT
CACACATTCCAAGGTGTGATATGGGTTTTTAATGCATCAAAAAATCTAAAAAAAAATTCAATTAC
AATCTGAATATTTTTACGAAATTCAACTTCGTGAAGTCCTAATTACAAAAATACACCTAAAGGTT
Found at i:16362877 original size:801 final size:794
Alignment explanation
Indices: 16361321--16362892 Score: 1760
Period size: 801 Copynumber: 2.0 Consensus size: 794
16361311 TCACACTTTT
* *
16361321 CAAGGTGTGATCTGGGTTTTAAATACATAAAAAATACTAAAAAAAATTTAATTACAATATGAAAA
1 CAAGGTGTGATCTGGGTTTTAAATACATAAAAAATACTAAAAAAAATTCAATTACAAGATGAAAA
* * *
16361386 TTTTCATGAAAATTTGACTTCGACAAAGCCAAATTATGAAAATTCTCCTAAAGGTGTTTTGTTAA
66 TTTTCATGAAAATTTGACTTCGACAAAGCCAAATTATGAAAATACTCCTAAAGGTATTTTGGTAA
* * * * * *
16361451 TTTTACCTTTCTCAAATTGCATTAAGGGTTTTTAGTGCTTCAAAATCATAAATTTCAATTTTAAT
131 TTTTACCTTTCTAAAATTGCAATAAGGGTCTTTAGAGCTTCAAAATCACAAATTTCAATCTTAAT
* * *
16361516 CCAAATGATTCCAATTTGATTGTCTCAAATTCATGCAAGGGTCCAAAATTCACCTTTGTTTTTGT
196 CCAAATGATTCCAATTTGATTGTCTCAAATTCATCCAAGGGTCCAAAATTCACCCTTGTTTTTAT
* * * * *
16361581 TTCAATGAGCAAACTTTCTCCCTTGGATCAAGATTCCCAATGTGATCCAATGGCCTAGTTACTTA
261 TTCAAGGAGCAAACTTTCACACTTGGATCAAGACTCCCAATGTGATCCAATGGCCGAGTTACTTA
* * * * *
16361646 CTACCACATATGTGATTTTTAAAGCTCTTGGATCATGTAGAAAGAGCATTTTGCCCTTAATACAA
326 CTACCAAAGATGTGATTTTTAAAGCTCTTAGATCAAGTAAAAAGAGCATTTTGCCCTTAATACAA
* * * *
16361711 AGTTTTCAACCTTTAGGCCATTTTTTTGGAAATTGATCATGTTCATTTTTGTGATTTTAATGCAC
391 AGTTTTCAACCTTTAGGCCATCTTCTGGGAAATTGATCATGTTCATTTTTATGATTTTAATGCAC
* * *** *
16361776 AAAAAATCATGAAATAGTATGGAAGTAAAATCTAGAAAGTTTTGTGAAAATTTGACTTTGAAAAG
456 AAAAAATCATGAAATAATATGGAACTAAAATCTAGAAAGTTTTGTGAAAATCCAACTTAGAAAAG
* * * * *
16361841 GATAAATTACAAAATTACCCTTAAGGGATATTTTGATAATTTCACACCTCTCGAGGTGCTACCAT
521 GATAAATTAAAAAATTACCCCTAAGGGATATTTTGATAATGTCACACCTCTAGAGGTGCTACAAT
* * * * *
16361906 GGTTCGTATACACCAAAAATCATCAAATATTTTAAAAGAATGATGTGAAAAGTTTTGCAAAAAAC
586 GGTTCGAATACACCAAAAATCATCAAACATTTTAAAAGAATGATATGAAAAGTTCTACAAAAAAC
* *
16361971 CAAACTCAAGAAGGTCAAATTATGAAGTTACCCTAAAAGGGGTTTTTAGTAATTTTGCACCTTTC
651 CAAACTCAAGAAGGTCAAATTATGAAATTACCCTAAAACGGGTTTTTAGTAATTTTGCACCTTTC
* *
16362036 AAAGTGCAATCAAAGTTTTCAAAATTAAAAAAATATCAAATAATATCTAACCATGATATTATTGT
716 AAAGTGCAATCAAAGTTTTCAAAATTAAAAAAACATCAAATAATATCAAACCATGATATTATTGT
16362101 AATTTCACACCACC
781 AATTTCACACCACC
* * * * * * ** * *
16362115 CAAGGTGTGATTTGGGTTTTTAATGCATCAAAAATCCTAAAAAATATTCAATTATGAGCTGAATA
1 CAAGGTGTGATCTGGGTTTTAAATACATAAAAAATACTAAAAAAAATTCAATTACAAGATGAAAA
* * * * *
16362180 TTTTTATGAGAATTTGACTTTGA-GAAGTTCAAATTATGAAAATAC-CCTTAAATGGTATTTTGG
66 TTTTCATGAAAATTTGACTTCGACAAAG-CCAAATTATGAAAATACTCC-TAAA-GGTATTTTGG
*
16362243 TAATTTTACCTTTTTTAAAATTGCAATAAGGGTCTTTAGAGCTTCAAAATCACAAATTTCAATCT
128 TAATTTTACC-TTTCTAAAATTGCAATAAGGGTCTTTAGAGCTTCAAAATCACAAATTTCAATCT
* * * * ** *
16362308 TAATCTAAATTGGTTTCAATTTGATTGTC-CTAAATTCATCCAATGGTTTAAAATTTACCCTTGT
192 TAATCCAAA-TGATTCCAATTTGATTGTCTC-AAATTCATCCAAGGGTCCAAAATTCACCCTTGT
* * * *
16362372 TTTTATTTCAAGGGGCAAATTTTCACACTTGGAT-AAGACTCCTGAA-GTGATCCAATGGTTCG-
255 TTTTATTTCAAGGAGCAAACTTTCACACTTGGATCAAGACTCC-CAATGTGATCCAATGG-CCGA
** *
16362434 GATTGTTTACTACCAAAGATGTGATTTTTAAAGCTCTTAGATCAAGTAAAAAGATCATTTTGCCC
318 G-TTACTTACTACCAAAGATGTGATTTTTAAAGCTCTTAGATCAAGTAAAAAGAGCATTTTGCCC
* * * *
16362499 TTAATACAAAGTTTTCGATC-TTAGGCTATCTTCTGGGAAATCGATGCTCAAGTGTTCATTTTTA
382 TTAATACAAAGTTTTCAACCTTTAGGCCATCTTCTGGGAAAT---TGATC-A-TGTTCATTTTTA
* * * * * * *
16362563 TTATTTTACA-GCTCCAAAAATCATGAAATAATATGGAACTAGAGTTTGGAACA-TTTTGTGAAA
442 TGATTTTA-ATGCACAAAAAATCATGAAATAATATGGAACTAAAATCTAGAA-AGTTTTGTGAAA
* * *
16362626 ATCCAACCTTAG-AAATG-TCAAATTAAAAAATTACCCCTAAGGGATATTTTGGTAATGTGACAC
505 ATCCAA-CTTAGAAAAGGAT-AAATTAAAAAATTACCCCTAAGGGATATTTTGATAATGTCACAC
* * * * * * * **
16362689 CT-TAAGAGGTGCTGCAAGTGTTTTGAATGCACCAAAAATCTTTAAGCATTTTAAAATCATGATA
568 CTCT-AGAGGTGCTACAA-TGGTTCGAATACACCAAAAATCATCAAACATTTTAAAAGAATGATA
* * * *
16362753 TGAAAAGTTCTACAAAAAA-CTAACGTCGAA-AAGGTTAAATTACT-AAATTACCCT-TAACTGG
631 TGAAAAGTTCTACAAAAAACCAAAC-TC-AAGAAGGTCAAATTA-TGAAATTACCCTAAAACGGG
* * * * * *
16362814 TATTTTGGTAA-TTT-CACATTTTC-ATGATGCGATCAAGGTTTTCAAAATTCAAAAAACATCAA
693 T-TTTTAGTAATTTTGCAC-CTTTCAAAG-TGCAATCAAAGTTTTCAAAATTAAAAAAACATCAA
* *
16362876 ATGATATCAAACTATGA
755 ATAATATCAAACCATGA
16362893 ACTATAGAAT
Statistics
Matches: 639, Mismatches: 113, Indels: 45
0.80 0.14 0.06
Matches are distributed among these distances:
793 5 0.01
794 92 0.14
795 18 0.03
796 93 0.15
797 148 0.23
799 4 0.01
800 8 0.01
801 180 0.28
802 88 0.14
803 3 0.00
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (794 bp):
CAAGGTGTGATCTGGGTTTTAAATACATAAAAAATACTAAAAAAAATTCAATTACAAGATGAAAA
TTTTCATGAAAATTTGACTTCGACAAAGCCAAATTATGAAAATACTCCTAAAGGTATTTTGGTAA
TTTTACCTTTCTAAAATTGCAATAAGGGTCTTTAGAGCTTCAAAATCACAAATTTCAATCTTAAT
CCAAATGATTCCAATTTGATTGTCTCAAATTCATCCAAGGGTCCAAAATTCACCCTTGTTTTTAT
TTCAAGGAGCAAACTTTCACACTTGGATCAAGACTCCCAATGTGATCCAATGGCCGAGTTACTTA
CTACCAAAGATGTGATTTTTAAAGCTCTTAGATCAAGTAAAAAGAGCATTTTGCCCTTAATACAA
AGTTTTCAACCTTTAGGCCATCTTCTGGGAAATTGATCATGTTCATTTTTATGATTTTAATGCAC
AAAAAATCATGAAATAATATGGAACTAAAATCTAGAAAGTTTTGTGAAAATCCAACTTAGAAAAG
GATAAATTAAAAAATTACCCCTAAGGGATATTTTGATAATGTCACACCTCTAGAGGTGCTACAAT
GGTTCGAATACACCAAAAATCATCAAACATTTTAAAAGAATGATATGAAAAGTTCTACAAAAAAC
CAAACTCAAGAAGGTCAAATTATGAAATTACCCTAAAACGGGTTTTTAGTAATTTTGCACCTTTC
AAAGTGCAATCAAAGTTTTCAAAATTAAAAAAACATCAAATAATATCAAACCATGATATTATTGT
AATTTCACACCACC
Found at i:16364234 original size:578 final size:573
Alignment explanation
Indices: 16363100--16364276 Score: 1267
Period size: 578 Copynumber: 2.0 Consensus size: 573
16363090 ACACAAATTA
16363100 TATTTTGGTAATTTTACCCTTTTTGAATTGCAATCAGGGTTTTTAGCATTTCAAAATCACAAATT
1 TATTTTGGTAATTTTACCCTTTTTGAATTGCAATCAGGGTTTTTAGCA-TTCAAAATCACAAATT
* * ** *
16363165 TCAATCTTAATCCGTATTGGTTCCAATTTGATTGTCACATTTTCATCTAAAGGTCCAAAATTTAC
65 TCAATCTTAATCCATAATGGTTCCAATTTGATTGTCACAAATTCATCTAAAGGTCCAAAATTCAC
* * *
16363230 CATTGTTTTTGTTTCAAAGAGCAAACTTTCTCCCCTGATCAAGATTCCCAATGTGATCAACAGTC
130 CATTGTTTTTGTTCCAAAGAGCAAACTTTCGCCACTGATCAAGATTCCCAATGTGATCAACAGTC
** * * * *
16363295 TAGATTGTTTACTATTAGAGATGCTATTTTTAAAGCTTTTGTATCAAGTAAAAAAACCATTTTGC
195 TAGATTGTTTACTACCAGAGATGATAATTTTAAAGCTCTTGGATCAAGTAAAAAAACCATTTTGC
* *
16363360 CTCTAAGACAAAGTTTTTGGTCTTTAGGCTACTTTTGTGGAAATCGATGCTGCCATATTCATTTT
260 CTCTAAGACAAAGTTTTTGGTCTTTAGACCACTTTTGTGGAAATCGATGCTGCCATATTCATTTT
*
16363425 TGTGATTTTAAGGCACAAAAATCATGAAATAAAATGAAACTGAAATCTGGATAGTTTCGTGAAAA
325 TGTGATTTTAAGGCACAAAAATCATGAAATAAAATGAAACTAAAATCTGGATAGTTTCGTGAAAA
* * * *
16363490 TCCTACGTTAGGAAGGTCAAAGTACAAAATTACACCTAGAGGGTATTTTAGTAATTCACACCTCC
390 TCCAACCTTAAGAAGGTCAAAGTACAAAATTACACCTAGAGGGTAATTTAGTAATTCACACCTCC
* * ** * ** **
16363555 CATGGTGTGATATGGGCTTTTAATGCGTCAAAAATCCTTTAAAAAAAATTTAATTATGATATGGA
455 CATGGTGTGACATGGGCTTTTAATACACCAAAAA--CTATAAAAAAAATTTAAGCATGATATAAA
* *
16363620 AATTTCACTAAAATTTAACTTTGGAAAGGCCAAATTACAAAAATTCTCCTAAAGGG
518 AATTTCACTAAAACTGAACTTTGGAAAGGCCAAATTACAAAAATTCTCCTAAAGGG
* *
16363676 TATTTT-GTCAATTTTACCCTTTTTGAATTGCATTCATGGTTTTTAGTGCA-TCAAAATCACAAA
1 TATTTTGGT-AATTTTACCCTTTTTGAATTGCAATCAGGGTTTTTA--GCATTCAAAATCACAAA
* *
16363739 -TTCATTCTTAATCCATAATGGTTCCAGTTTGATTGTCACAAATTCATGC-AAATGGTCCAAAAT
63 TTTCAATCTTAATCCATAATGGTTCCAATTTGATTGTCACAAATTCAT-CTAAA-GGTCCAAAAT
* * * * *
16363802 TCACCTTTGTTTTTGTTCCAAGGAGCAAACTTTCGCCATTGGATCAAGATTGCCAGTGTGATCTA
126 TCACCATTGTTTTTGTTCCAAAGAGCAAACTTTCGCCACT-GATCAAGATTCCCAATGTGATC-A
** * * *
16363867 ATGGTCTCGATTGTTTACTACCAGAGAT-ATGAATTTTAAAGCTCTTGGATCAAGTAAAAAGAGC
189 ACAGTCTAGATTGTTTACTACCAGAGATGAT-AATTTTAAAGCTCTTGGATCAAGTAAAAAAACC
* * * * ****
16363931 ATTTTGCC-CTAAATACAAAGTTTTTGGTCTTTCGACCA-TTTTATTGGAAATTGATGCTTTGGT
253 ATTTTGCCTCT-AAGACAAAGTTTTTGGTCTTTAGACCACTTTT-GTGGAAATCGATGCTGCCAT
* * * * * *
16363994 GTTCATTTTTGTGA-TTTAATGTACCAAAAATCATGAAATAATATGGAACTAAAATTTGGATAGT
316 ATTCATTTTTGTGATTTTAAGGCA-CAAAAATCATGAAATAAAATGAAACTAAAATCTGGATAGT
* * * *
16364058 TTCGTGAAAATCCAACCTTAAGAATGTCAAATTACGAAATTAC-CCTTA-AGGGATAATTTGGTA
380 TTCGTGAAAATCCAACCTTAAGAAGGTCAAAGTACAAAATTACACC-TAGAGGG-TAATTTAGTA
** * * * *
16364121 ATTTCACACCTCTTGA-GGTGTTACCAT-GG-TTTTGAATACACCAAAAA-TAT-CAAATATTTT
443 A-TTCACACCTC-CCATGGTGTGA-CATGGGCTTTT-AATACACCAAAAACTATAAAAAAAATTT
* * * * **
16364181 AAAAGCATTATTTAAAAAGTTTCA-TGAAAAACTGAA-TTTGGGAAGGTCAAATTA-TGAAATTA
504 --AAGCATGATATAAAAA-TTTCACT--AAAACTGAACTTTGGAAAGGCCAAATTACAAAAATT-
*
16364243 C-CCTTAAAGAG
563 CTCC-TAAAGGG
*
16364254 TATTTTGGTAATTTCACACCTTT
1 TATTTTGGTAATTTTAC-CCTTT
16364277 CAAAGTGTGA
Statistics
Matches: 497, Mismatches: 78, Indels: 49
0.80 0.12 0.08
Matches are distributed among these distances:
575 53 0.11
576 99 0.20
577 58 0.12
578 242 0.49
579 42 0.08
580 3 0.01
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.36
Consensus pattern (573 bp):
TATTTTGGTAATTTTACCCTTTTTGAATTGCAATCAGGGTTTTTAGCATTCAAAATCACAAATTT
CAATCTTAATCCATAATGGTTCCAATTTGATTGTCACAAATTCATCTAAAGGTCCAAAATTCACC
ATTGTTTTTGTTCCAAAGAGCAAACTTTCGCCACTGATCAAGATTCCCAATGTGATCAACAGTCT
AGATTGTTTACTACCAGAGATGATAATTTTAAAGCTCTTGGATCAAGTAAAAAAACCATTTTGCC
TCTAAGACAAAGTTTTTGGTCTTTAGACCACTTTTGTGGAAATCGATGCTGCCATATTCATTTTT
GTGATTTTAAGGCACAAAAATCATGAAATAAAATGAAACTAAAATCTGGATAGTTTCGTGAAAAT
CCAACCTTAAGAAGGTCAAAGTACAAAATTACACCTAGAGGGTAATTTAGTAATTCACACCTCCC
ATGGTGTGACATGGGCTTTTAATACACCAAAAACTATAAAAAAAATTTAAGCATGATATAAAAAT
TTCACTAAAACTGAACTTTGGAAAGGCCAAATTACAAAAATTCTCCTAAAGGG
Found at i:16370704 original size:854 final size:853
Alignment explanation
Indices: 16368835--16371863 Score: 2245
Period size: 854 Copynumber: 3.5 Consensus size: 853
16368825 AGGTGTGATC
* * * * * * *
16368835 TGGGTTTCTAATGCATCAAAAATTCTAAAAAAATTCAATTACT-ATATGGATATTTTCAAGAAAA
1 TGGGTTTTTAATGCAACAAAAATCCTAAAAAAATTCAATTA-TGATCT-AAAATTTTCAAAAAAA
* * ** * ** * *
16368899 TTCGACTTC-AAGAAGTCCAAATTACAAAAATAAAC-CTAAAG-GTTATTTTGATAATTTTA-CC
64 TTCAACTTCGAA-AAGGCCAAATTATGAAAAT-ACCTCTAAAGAAAT-TTTTGCTAATTTAACCC
* * *
16368960 ATTC-TCAAAGTGTAATTAAGGTTTTTAGTGCTTCAAAATAACAAATTTCAATCTTAATCCACAT
126 A-TCAT-AAAATGCAATAAAGGTTTTTAGTGCTTCAAAATAACAAATTTCAATCTTAATCCACAT
* * ** *** *
16369024 TAGTTCCAATTTAATTGTCACAAACCAATACAAGGGTTTGCAATTCACCTTTGTTTTTATTTCAA
189 TGGTTCCAATTTGATTGTCACAAATTAATACAAGGGTTCAAAATTCACCCTTGTTTTTATTTCAA
* ** ** * * * * * * * *
16369089 GAAATAAACTTTCATGCTTGGATCAAG-TCTCTTAAAGTGATACAGTGGTCCGGGTTATGTATTG
254 GGAGCAAACTTTCACCCTTGGATCAAGAT-TCCTAATGTGAT-CAATAGTCCAGATTGTTTATTG
* *
16369153 GCAAAGATGTGATTTTTAAAGCTCTT-AGACCAAGTGAAAAGACTATTTTGCCTTAAATACAAAG
317 ACAAAGATGTGATTTTTAAAGCTCTTGA-ATCAAGTGAAAAGACTATTTTGCCTT-AATACAAAG
** *
16369217 TTTTTAGTCTTTAGGTTATATTCTTGGAAATCAATG-CTTAGGTGTTCATTTTTGTGATTTTAAA
380 TTTTTAGTCTTTAGGCAAT-TTCTTGGAAATCAATGTCTCA--TGTTCATTTTTGTGATTTTAAA
* * * * * *
16369281 GCAACAAAAATCATGAAATAATATGGAACTAAACTTTGGAATA-TTTCGTGAAAATCTTTCTTTA
442 GCAACAAAAATCATGAAATAATAT-GAACTAAAATCT-AAAAAGTTTCAT-AAAATCTATC--TA
* * *
16369345 GGAAGGTCAAATTATGAAATTACCTCTAAAGGGTATTTTGATAATTTCACACCTCATGAAGTGCT
502 AGAAAGTCAAATTATGAAATTACC-CTTAAGGGTA-TTTGATAATTTCACACCTCATGAAGTGCT
* * * * * * *
16369410 ACTAGGGTTTTGAATTCACCAAAAATCATTAAGTATTTTAAAAATATGATCTGAAAAGTTTTGCA
565 ACCAGGGTTTTGAATACACCAAAAATCATCAAATATATTAAAAACATGATATGAAAAGTTTTGCA
*** **
16369475 AAAAACTAACCTTTGGAAGGTCAAATTATGAAATTACCCTTAAGTGATATTTTGGTAATTTCACA
630 AAAAACTAACCTTAAAAAGGTCAAATTACAAAATTACCCTTAAGTGATATTTTGGTAATTTCACA
** * * * * *
16369540 ACATCATGGTTTGTTCAAGGTTTTAAAAATTCAAAAAATCATCAAATGATATCAAACCATGATCT
695 ACATCAAAGTGTGATCAAGGTATTAAAAATTCAAAAAATCATCAAATAACATCAAACCATGATCT
* *** * ** * * * * *
16369605 GGAGTGTTTTATGAAATTCAAACCTTAGGAAGGTTAAATTACAAAAATACTCTTAAAGGTGTTTT
760 AGAGCACTTCACAAAATTCAAACCTTAGGAAGCTCAAACTACAAAAATACTCTCAAAGGGGTTTT
** *
16369670 TGTAATTTCACTTCTCCTAATATGCGATA
825 TGTAATTTCACACCTCCCAATATGCGATA
* * * *
16369699 TGGGTTTTTAATGCAACAAATATCCTAAAAAAATTTAATTATGATCTAAACTTTTCACAAAAATT
1 TGGGTTTTTAATGCAACAAAAATCCTAAAAAAATTCAATTATGATCTAAAATTTTCAAAAAAATT
* ** * *
16369764 CAACTTCGAAAATGCCAAATTATGAAAATACCTCTAAAGGGTATTTTTGGTAATTTAACCCATCT
66 CAACTTCGAAAAGGCCAAATTATGAAAATACCTCTAAA-GAAATTTTTGCTAATTTAACCCATCA
* * *
16369829 TAAAATGCAATCAAGGTTTTTAGTGGTTCAAAATAACTAATTTCAATCTTAATCCACATTGGTTC
130 TAAAATGCAATAAAGGTTTTTAGTGCTTCAAAATAACAAATTTCAATCTTAATCCACATTGGTTC
* * * * *
16369894 AAATTTGATTGTCAAAAATTTATCCAAGGGTTCAAAATTCACCCTTATTTTTATTTCAAGGAGCA
195 CAATTTGATTGTCACAAATTAATACAAGGGTTCAAAATTCACCCTTGTTTTTATTTCAAGGAGCA
* * * * *
16369959 AACTTTCACCCTTTGATTAAGATTCCTAATGTGATCTAACAATCC-GATTGTTTATTGCCAAAGA
260 AACTTTCACCCTTGGATCAAGATTCCTAATGTGATC-AATAGTCCAGATTGTTTATTGACAAAGA
* * * * * * *
16370023 TGTGATTTTTAAAGCTATTGAATCAAGTGAAAAGGCCATTTTACATATAATGCAAAGATTTT-GT
324 TGTGATTTTTAAAGCTCTTGAATCAAGTGAAAAGACTATTTTGCCT-TAATACAAAGTTTTTAGT
* * *
16370087 CTTTAGACCATTCTCTTGGAAATCAATGTTCTCATGTTCATTTTTGTGATTTTAAAGCACCAAAA
388 CTTTAGGCAATT-TCTTGGAAATCAATG-TCTCATGTTCATTTTTGTGATTTTAAAGCAACAAAA
* *
16370152 ATCATGAAAAAATATAGAACTAAAATCTAAAAAGTTTCAT-AAA-C-ATCTGAGAAAGTCAAATT
451 ATCATGAAATAATAT-GAACTAAAATCTAAAAAGTTTCATAAAATCTATCTAAGAAAGTCAAATT
* * * *
16370214 ATGAAATTACCCTTAAGGGTATTTCGATAATTTCACACGTC-TGAGGTGTTACCATGGTTTTGAA
515 ATGAAATTACCCTTAAGGGTATTT-GATAATTTCACACCTCATGAAGTGCTACCAGGGTTTTGAA
* * *
16370278 TACACCAAAAATCATCAAATATATTAAAAGCATGATATGAAAAGTTTTG-AGAAAAATTGACCTT
579 TACACCAAAAATCATCAAATATATTAAAAACATGATATGAAAAGTTTTGCA-AAAAACTAACCTT
* * *
16370342 AAAAAGGTCAATTTACAAAATTACCCTTAAAG-GTTATTTTGGTAATTTCAC-ACTTTCCAAAGT
643 AAAAAGGTCAAATTACAAAATTACCCTT-AAGTGATATTTTGGTAATTTCACAAC-AT-CAAAGT
*
16370405 GTGATCAAGGTATTCAAAATT-ATAAAAATCATCAAATAACATCAAACCATGATCTAGAGCACTT
705 GTGATCAAGGTATTAAAAATTCA-AAAAATCATCAAATAACATCAAACCATGATCTAGAGCACTT
** * * *
16370469 CACAAAATTTTAACCTTGGGAAGCTCAAACTATGAAGAA-AC-C-CAAAGGGGATTTTTGTAATT
769 CACAAAATTCAAACCTTAGGAAGCTCAAACTA-CAAAAATACTCTCAAAGGGG-TTTTTGTAATT
*
16370531 TCACACCTCCCAA-AGTGTGA-A
832 TCACACCTCCCAATA-TGCGATA
* * * *
16370552 TTGGGTTTTTAATGCATCAAAAATTCTTTAAAAATATTCAATTATGATTTGAAAATTTTCAAAAA
1 -TGGGTTTTTAATGCAACAAAAA-TC-CTAAAAAAATTCAATTATGATCT-AAAATTTTCAAAAA
* * **
16370617 AATTTGAA-TTC-ATCAAGGCCAAATTATGAAAATACC-CTTAAA-AAATTTTTGCTAATTT-TT
62 AA-TTCAACTTCGA-AAAGGCCAAATTATGAAAATACCTC-TAAAGAAATTTTTGCTAATTTAAC
* * * * * *
16370677 TCTTCATGAATTGCAATAAATGTTTTTAGTGTTTCAAAA-ACACAAATTTCAATCTTAATCCACA
124 CCATCATAAAATGCAATAAAGGTTTTTAGTGCTTCAAAATA-ACAAATTTCAATCTTAATCCACA
* * * * *
16370741 TTGGTTCCAATTTGATTGTCACAAATTCATTCAAGGGTCCAAAATTCACCCTTGTTTTTGTTTGA
188 TTGGTTCCAATTTGATTGTCACAAATTAATACAAGGGTTCAAAATTCACCCTTGTTTTTATTTCA
* * *
16370806 AGGAGCAAACTTTCTCCCTTGGATCAAGATTCCTAATGTGATCCAATAGTCCAGATTGTTTACTA
253 AGGAGCAAACTTTCACCCTTGGATCAAGATTCCTAATGTGAT-CAATAGTCCAGATTGTTTATTG
* * * * * *
16370871 ACATAGATGTGATTTTTAAAGCTCTTGGATTAAGTAAAAAGATTATTTTGCCCCTAATACAAAGT
317 ACAAAGATGTGATTTTTAAAGCTCTTGAATCAAGTGAAAAGACTATTTTG-CCTTAATACAAAGT
* * * * *
16370936 TTTTGGTCTTTAGGCAACTTTCTTGGAAATCAATGCTATCATTTTCA-TTTTATAATTATATAAA
381 TTTTAGTCTTTAGGCAA-TTTCTTGGAAATCAATG-TCTCATGTTCATTTTTGTGATT-T-TAAA
* * * *
16371000 GCAACAAAAATCTTGAAATAATATGAATCTAAAATCTAGAAAGTTTCATGAAAATCTAACTAAAA
442 GCAACAAAAATCATGAAATAATATGAA-CTAAAATCTAAAAAGTTTCAT-AAAATCTATCTAAGA
* * *
16371065 AAGGTCAAATTATGAAATTACCCTTAAAGGGTATATTGGTAATTTCA-A-ATC-T----T--T-T
505 AA-GTCAAATTATGAAATTACCCTT-AAGGGTAT-TTGATAATTTCACACCTCATGAAGTGCTAC
* * * *** *
16371120 GA-GG---TG-CT--A-C------CATCAAATATTTTAAATGTATGATTTAGAAAA--TTT-CAT
567 CAGGGTTTTGAATACACCAAAAATCATCAAATATATTAAAAACATGATAT-GAAAAGTTTTGCA-
* * * * * ** * **
16371168 GAAAAACCAAACTTAAGAATGTCAAATTACAAAATT-GCCTATAAAAGGTATCATGGTAATTTCA
630 -AAAAACTAACCTTAAAAAGGTCAAATTACAAAATTACCCT-TAAGTGATATTTTGGTAATTTCA
* * * * * * * * *
16371232 CACCTTTCAAGGTGCGATCAAGGTTTTCAAAATTCTAAAAATCATAAAATAATATCAAACCATGA
693 CAAC-ATCAAAGTGTGATCAAGGTATTAAAAATTCAAAAAATCATCAAATAACATCAAACCATGA
* * * ** * *** * * * ** * * *
16371297 T-TTGAACTATTTTGCGAAATTTTGACCTT-GAAAAGGTCAAATTATGAAATTACCCT-TAAGGG
757 TCTAGAGC-ACTTCACAAAATTCAAACCTTAG-GAAGCTCAAACTACAAAAATACTCTCAAAGGG
* ** ** *
16371359 GTATTTTTGTAATTAT-GCACCTAGCAAGGTGTGATA
820 G--TTTTTGTAATT-TCACACCTCCCAATATGCGATA
* * * **
16371395 TGGGTTTTTAATGCATCAAAAAGT-CTAAAAAAAACTCAATTATGATCCAAATATTGTT-ACGAA
1 TGGGTTTTTAATGCAACAAAAA-TCCT-AAAAAAATTCAATTATGATCTAAA-ATT-TTCAAAAA
* * * * ** * * *
16371458 AATTCAATTTTGAGAAA-GCCAAATTTTGAAAATGTCCT-TAAAG-GGTATTTGGTAATTTTACC
62 AATTCAACTTCGA-AAAGGCCAAATTATGAAAAT-ACCTCTAAAGAAATTTTTGCTAATTTAACC
* * * * * * * ** * *
16371520 CTTC-TCAAAGTGCACTCAAGGTTTTTAATACTTGAAAATCGCAAATTTCAAACTTATTCCACAT
125 CATCAT-AAAATGCAATAAAGGTTTTTAGTGCTTCAAAATAACAAATTTCAATCTTAATCCACAT
* * * * * *
16371584 TGGTTCCAATTTGATTGTCACAAATTCATCCAAGGGTCCAAAATTCACCTTTTTTTTTTTTTCAA
189 TGGTTCCAATTTGATTGTCACAAATTAATACAAGGGTTCAAAATTCACCCTTGTTTTTATTTCAA
* * * ** * * *
16371649 -AAACAAAACTTTCTCCCTTGGATCAAGATT-AAAATGTGATCCAATGGTCCAAATTGTTTACT-
254 GGAGC-AAACTTTCACCCTTGGATCAAGATTCCTAATGTGAT-CAATAGTCCAGATTGTTTATTG
* * * * * * *
16371711 ATTAGAGATGTGATTTTTAAAGC-CATT-AGATCAAGTAAAAAAATTATTTTACCCTAGATACAA
317 A-CAAAGATGTGATTTTTAAAGCTC-TTGA-ATCAAGTGAAAAGACTATTTTGCCTTA-ATACAA
* * * **
16371774 AG-TTTTCGATCTTTAGGCCACTTTCTTGGAAATCGATGCTCTTGTGTTCCA-TTTTGTGATTTT
378 AGTTTTTAG-TCTTTAGG-CAATTTCTTGGAAATCAATG-TCTCATGTT-CATTTTTGTGATTTT
*
16371837 AAAGC-ACAAAAAATCATGGAATAATAT
439 AAAGCAAC-AAAAATCATGAAATAATAT
16371864 AAAACTTAGA
Statistics
Matches: 1773, Mismatches: 309, Indels: 190
0.78 0.14 0.08
Matches are distributed among these distances:
839 18 0.01
840 191 0.11
841 183 0.10
842 200 0.11
843 2 0.00
846 1 0.00
847 1 0.00
849 1 0.00
850 2 0.00
853 14 0.01
854 319 0.18
855 196 0.11
856 87 0.05
857 90 0.05
858 6 0.00
859 4 0.00
860 4 0.00
861 14 0.01
862 109 0.06
863 123 0.07
864 202 0.11
865 6 0.00
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (853 bp):
TGGGTTTTTAATGCAACAAAAATCCTAAAAAAATTCAATTATGATCTAAAATTTTCAAAAAAATT
CAACTTCGAAAAGGCCAAATTATGAAAATACCTCTAAAGAAATTTTTGCTAATTTAACCCATCAT
AAAATGCAATAAAGGTTTTTAGTGCTTCAAAATAACAAATTTCAATCTTAATCCACATTGGTTCC
AATTTGATTGTCACAAATTAATACAAGGGTTCAAAATTCACCCTTGTTTTTATTTCAAGGAGCAA
ACTTTCACCCTTGGATCAAGATTCCTAATGTGATCAATAGTCCAGATTGTTTATTGACAAAGATG
TGATTTTTAAAGCTCTTGAATCAAGTGAAAAGACTATTTTGCCTTAATACAAAGTTTTTAGTCTT
TAGGCAATTTCTTGGAAATCAATGTCTCATGTTCATTTTTGTGATTTTAAAGCAACAAAAATCAT
GAAATAATATGAACTAAAATCTAAAAAGTTTCATAAAATCTATCTAAGAAAGTCAAATTATGAAA
TTACCCTTAAGGGTATTTGATAATTTCACACCTCATGAAGTGCTACCAGGGTTTTGAATACACCA
AAAATCATCAAATATATTAAAAACATGATATGAAAAGTTTTGCAAAAAACTAACCTTAAAAAGGT
CAAATTACAAAATTACCCTTAAGTGATATTTTGGTAATTTCACAACATCAAAGTGTGATCAAGGT
ATTAAAAATTCAAAAAATCATCAAATAACATCAAACCATGATCTAGAGCACTTCACAAAATTCAA
ACCTTAGGAAGCTCAAACTACAAAAATACTCTCAAAGGGGTTTTTGTAATTTCACACCTCCCAAT
ATGCGATA
Found at i:16372400 original size:57 final size:55
Alignment explanation
Indices: 16372326--16372463 Score: 174
Period size: 57 Copynumber: 2.5 Consensus size: 55
16372316 TTTTTACCTA
* * *
16372326 AAGAAAATTAATACTTTCAACTTTTCCTTAAACCCTCTTTTT-TAT-TTTTTTTATTT
1 AAGAAAATTTATACTTTCAACTTTTCCTT-AA-CAT-TTTTTAAATATTTTTTTATTT
16372382 AAGGAAAATTTATACTTTCAACTTTTCCTTAACATTTTTTGAAATATTTTTTTATTT
1 AA-GAAAATTTATACTTTCAACTTTTCCTTAACATTTTTT-AAATATTTTTTTATTT
16372439 AAGAAAATTTGATA-TTTCAACTTTT
1 AAGAAAATTT-ATACTTTCAACTTTT
16372464 TTTAAAAAAT
Statistics
Matches: 74, Mismatches: 3, Indels: 10
0.85 0.03 0.11
Matches are distributed among these distances:
54 5 0.07
55 2 0.03
56 25 0.34
57 42 0.57
ACGTcount: A:0.32, C:0.12, G:0.04, T:0.51
Consensus pattern (55 bp):
AAGAAAATTTATACTTTCAACTTTTCCTTAACATTTTTTAAATATTTTTTTATTT
Found at i:16372490 original size:56 final size:58
Alignment explanation
Indices: 16372369--16372500 Score: 157
Period size: 57 Copynumber: 2.3 Consensus size: 58
16372359 CCTCTTTTTT
* ** * *
16372369 ATTTTTTTTATTTAAGGAAAATTTATACTTTCAACTTTTCCTTAACATTTTTTGAAAT
1 ATTTTTTTTATTTAAGGAAAATTTATACTTTCAACTTTTCCTTAAAAAATTTTAAAAA
*
16372427 A-TTTTTTTATTTAA-GAAAATTTGATA-TTTCAACTTTT-TTTAAAAAATTTTAAAAA
1 ATTTTTTTTATTTAAGGAAAATTT-ATACTTTCAACTTTTCCTTAAAAAATTTTAAAAA
16372482 ATTATTTTTTATTT-AGGAA
1 ATT-TTTTTTATTTAAGGAA
16372501 GAAATTTAAC
Statistics
Matches: 64, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
55 13 0.20
56 21 0.33
57 29 0.45
58 1 0.02
ACGTcount: A:0.36, C:0.06, G:0.05, T:0.53
Consensus pattern (58 bp):
ATTTTTTTTATTTAAGGAAAATTTATACTTTCAACTTTTCCTTAAAAAATTTTAAAAA
Found at i:16378274 original size:144 final size:143
Alignment explanation
Indices: 16378068--16378412 Score: 358
Period size: 144 Copynumber: 2.4 Consensus size: 143
16378058 CATGGAAATT
* * * * ** *
16378068 TAACCTTGAAAGGTCAAATTTTGAAATTA-TCTCTAAGGTTTATTTTGGTAATTTTATACCTCTC
1 TAACCTAGAAAGGTTAAATTATGAAATTACCCT-TAAGGGGTATTTTGGTAATTTCATACCTCTC
* * ** ** ** * *
16378132 GAGGTGCT-GCCATGGTTTTAAAAGCATTAAAAATCATCAAATATTTTAAAAGTGTGATTTGGAA
65 GAGGTGCTAG-CATAGTTCTAAAAGCACCAAAAATCATCAAATATTAAAAAAGCATGAATTGAAA
*
16378196 AGTTTCA-CAAAAAT
129 AGTTTCATCAAAAAC
* ** *
16378210 TCATCCTCAAGAAA-GTTAAATTAT-AAAGTTGTCGTTAAGGGGTATTTTGGTAATTTCATACCT
1 T-AACCT--AGAAAGGTTAAATTATGAAA-TTACCCTTAAGGGGTATTTTGGTAATTTCATACCT
* * *
16378273 CTCGAGGTGCTAGTATAGTTCTGAATGCACCAAAAATCATCAAATATTAAAAAAGCATGAATTGA
62 CTCGAGGTGCTAGCATAGTTCTAAAAGCACCAAAAATCATCAAATATTAAAAAAGCATGAATTGA
*
16378338 AAATTTTCATCAAAAAC
127 AAAGTTTCATCAAAAAC
*
16378355 TAACCTTGAAAGGTTAAATTATGAAATTACCCTTAAGGGGTATTTTGGTAATTTCATA
1 TAACCTAGAAAGGTTAAATTATGAAATTACCCTTAAGGGGTATTTTGGTAATTTCATA
16378413 TATTCTAAGG
Statistics
Matches: 164, Mismatches: 30, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
142 5 0.03
143 46 0.28
144 100 0.61
145 13 0.08
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.35
Consensus pattern (143 bp):
TAACCTAGAAAGGTTAAATTATGAAATTACCCTTAAGGGGTATTTTGGTAATTTCATACCTCTCG
AGGTGCTAGCATAGTTCTAAAAGCACCAAAAATCATCAAATATTAAAAAAGCATGAATTGAAAAG
TTTCATCAAAAAC
Found at i:16382127 original size:863 final size:857
Alignment explanation
Indices: 16378540--16385026 Score: 4653
Period size: 863 Copynumber: 7.6 Consensus size: 857
16378530 CCTAAAGGTA
** * * *
16378540 TTTTAATGCATAAAAAATCCTAAAAAAA-TCAATTACAATGTGGAAATTTACACGAAAATT-AGA
1 TTTTAATGCATAAAAAATCCTAAAAAAATTCAATTATGATCTAGAAATTTTCACGAAAATTCA-A
* * ** *
16378603 CTTCGAGAAGGCTAAATTATG-AAATAGC-CCTAAAGGGTATTTTGGTAATTTTACTTTTTTTC-
65 CTTCGAGAAGTC-AAATTATGAAAATA-CACATAAAGGGTATTTTGGTAATTTTACTCCTTCTCG
* * * * * * * *
16378665 AGGTGCAATCAAGGTTTTCAGTACTTCAAAATAATAAATTTCAATCTTAATCCATATTTGTTCAA
128 AAGTGCAATCAAGGTTTT-AGTGCTTCAAAATCACAAATTTCAATATTAATCCACATTAGTTCCA
* * *
16378730 ATTTGATTGTCACAAATTCATCTAAAGGTCCAAAATTCTCCTTTGTTTTTGCTTCAAGGAGCAAA
192 ATTTGATTGTCACAAATTCATCTAAGGGTCCAAAATTCACCTTTGTTTTTGTTTCAAGGAGCAAA
* *** * * *
16378795 CTTTCACCATTGGATCTAGATTCCCAATACAATCCAATGATCCAGATTATTTACTGGCAAAGATG
257 CTTTCACC-TTGGATCAAGATTCCCAATGTGATCCAATGGTCCAGATTGTTTACTGCCAAAGATG
* * * * * * * *
16378860 TAATTTTTAAAAC-CTT-GAATCAAGTAAAAATATCATTTTGCACATAATACAAAGTTTTCGATC
321 TGATTTTTAAAGCTCTTAG-ATCAAGTAAAAAGACCATTTTGCCCTTAATACAAAGTTTTTGGTC
* * ** * *
16378923 TTTAGGCCATTTTCTAGGAAAGTCAATGCTCTTGCCTTCTTTTTTGTGATTTTAAAG-TATCAAA
385 TTTAGGCCATTTTCTTGG-AAGTCAATGCTCTCGTGTTCATTTTT-TGATTTTAAAGCT-CCAAA
* * * * * * * * * *
16378987 AATCATTAAATAAAATGGAACTAAAATCTGAAAAGTTT-AGTGAAAATCCAACATCAGGATGGTC
447 AATCATGAAATAATATGAAACTAAAATTTGAAAAGTTTCA-TGAAAATCCGACCTTAAGAAGGTT
* * *
16379051 AAATTGA-GAAATT-ACCCTTAAGGGTATTTTGGTAATTTCACACCTCCCAAGGTGCTACCATGG
511 AAATT-ACAAAATTAACCC-TAAGGGTATTTTAGTAATTTCACACCTCTCAAGGTGCTACCATGG
* *
16379114 TTTTGAATGCACCAAAAATCATTAAATATTTTAAAAGCATGA-TTGAAAAAGTTTTGC-AAAAAT
574 TTTTGAATGCACCAAAAATCATTAAATATTTTAAAAGCATGATTTG-GAAAGTTTTGCAAAAAAC
** * * * *
16379177 TGACC-TCGAAAATGTCAAATTATGAAATCACCTTTAAAGGTTATTTTGGTAATTTCACACCTTT
638 CAACCTTAG-AAA-GTCAAATTATGAAATTACCTTT-AAGGATATTTTGGTAATTTCACACATTT
*** * * * * * * *
16379241 CAAGGTTTGATTAAAGTTTAC-AAATTTTAAAACTCGTCAAATAATATCAAACCATTATTTGAAG
700 -AAGGTGCAATCAAGGTTTTCAAAATTCTAAAACTCATCAAATAATATCAAACCATGATCTGAAG
* ** * * * * *
16379305 CATTTCAAGAAATTTTGATCTTAGAAAGGTCAAATTACGAAAATAACCCTAAAAGTATTTTTGTA
764 CATTTCACGAAATTTCAACCTTGGGAAGGTCAAATTACGAAAATAACCCTAAAGGTATTTTTATA
* ** * * *
16379370 CTTTCATA-ACTCCCTAGCTGTGAT-TTGGG
829 ATTT--TACACAACCAAGGTGTGATCTTGGT
* * * * * *
16379399 TTTTAATACATAAAATATCCT-AAAAAGTTCAAATATGAT-TCGAAAATTTTCATGAAAATTCAA
1 TTTTAATGCATAAAAAATCCTAAAAAAATTCAATTATGATCTAG-AAATTTTCACGAAAATTCAA
* * ** * * *
16379462 C-TCTGAGAAGGTCAAATTATGAAAATACTCCTAAAGGGTATTTTCATAATTTTGCACC-TATCG
65 CTTC-GAGAA-GTCAAATTATGAAAATACACATAAAGGGTATTTTGGTAATTTTACTCCTTCTCG
* *
16379525 AAGTGCAATCAAGGTTTTTAGTGCTTCACAATCACAAATTTCAATATTAATCCACATTTGTTCC-
128 AAGTGCAATCAAGG-TTTTAGTGCTTCAAAATCACAAATTTCAATATTAATCCACATTAGTTCCA
* * * **
16379589 ATTTGATTGTCACAAATTCATCT-AGTGGTCCGAAATTCACCCTTGTTTTTGTTCCAAATAGCAA
192 ATTTGATTGTCACAAATTCATCTAAG-GGTCCAAAATTCACCTTTGTTTTTGTTTCAAGGAGC-A
* * * * * *
16379653 AACTTTCACCCTTGGATCAAGATTCACAATGTGATCCAATAGTACAAATTGTTTATTACC-AA-A
255 AACTTTCA-CCTTGGATCAAGATTCCCAATGTGATCCAATGGTCCAGATTGTTTACTGCCAAAGA
* * ** * * *
16379716 TGTGATTTTTAATGCTCTTGGATCAAGTAAAAAGGTCATTTTGCCCTCAATATAAA-TTTTTATG
319 TGTGATTTTTAAAGCTCTTAGATCAAGTAAAAAGACCATTTTGCCCTTAATACAAAGTTTTT-GG
* * * *
16379780 TCTTTAGGCCATTTTATTGGAAAGTCAATGCTTTCGTGTTCATTTTTGTGAATTTAAAGCACCAA
383 TCTTTAGGCCATTTTCTTGG-AAGTCAATGCTCTCGTGTTCATTTTT-TGATTTTAAAGCTCCAA
* * * ** * * * * *
16379845 AAATCATGAAACAAAATGGAACTAAAATTTGAAAAGTTTTGTGAACATTCGACATTAGGAAAGTT
446 AAATCATGAAATAATATGAAACTAAAATTTGAAAAGTTTCATGAAAATCCGACCTTAAGAAGGTT
* * * * * *
16379910 AAATTACAAAATTAACGCTTAGGGTATTTT-GATTATTTCACACCT-TCTGAGGTGCTACTATTG
511 AAATTACAAAATTAACCCTAAGGGTATTTTAG-TAATTTCACACCTCTC-AAGGTGCTACCATGG
* * ** ** * *
16379973 TTTTGAATGCATCTAAAATCAACAAATATTTTAAACCCATGATCTGAAAAGTTTTGCAAAAAACC
574 TTTTGAATGCACCAAAAATCATTAAATATTTTAAAAGCATGATTTGGAAAGTTTTGCAAAAAACC
* * * * * * *
16380038 AACCTT-GTGAAGTCAAATTACGAAATTACCTTTAATGAGGTATTTTAGTAATTTTATACTTTTT
639 AACCTTAG-AAAGTCAAATTATGAAATTACCTTTAA-G-GATATTTTGGTAATTTCACAC----A
* * *
16380102 TTTAAGGT-CTGATCAAGGTTTTCAAAATTCTAAAAGTTATCAAATAATATCAAACCATGATCT-
697 TTTAAGGTGC-AATCAAGGTTTTCAAAATTCTAAAACTCATCAAATAATATCAAACCATGATCTG
* * * ** *
16380165 AGAGCATTTCACAAAATTTCAACCTTGGGATGGTCAAATTATGAAAATAACTTTAAGGGTATTTT
761 A-AGCATTTCACGAAATTTCAACCTTGGGAAGGTCAAATTACGAAAATAACCCTAAAGGTATTTT
* * *
16380230 TATAATTTTACACATCATAAGGTGTG-GC-TGGT
825 TATAATTTTACACAAC-CAAGGTGTGATCTTGGT
* * *
16380262 TTTTAATGCATAAAAAATCTCTAAAAAAATTCATTTATAATC-AGGAAATTTTCACAAAAATTCA
1 TTTTAATGCATAAAAAATC-CTAAAAAAATTCAATTATGATCTA-GAAATTTTCACGAAAATTCA
* * * * * *
16380326 ACTTCAAGAAGGCCAAATTACGAAAATACTCACTAAA-TGTATTTTGGTAATTTTACTAC-TCTC
64 ACTTCGAGAA-GTCAAATTATGAAAATACACA-TAAAGGGTATTTTGGTAATTTTACTCCTTCTC
* * * * * * * * *
16380389 AAAGGGCAATCATGATTTTTATTGCGTCAAAATCACAAATTTTAATTTTAATCCGCATTTA-TTC
127 GAAGTGCAATCAAG-GTTTTAGTGCTTCAAAATCACAAATTTCAATATTAATCCACA-TTAGTTC
* * * *** * *
16380453 CAATTTGATTGTCATAAATTCATCCAAGGTTTTTAAATTCACCCTT-TTTTTGTTTCAAGGAGTA
190 CAATTTGATTGTCACAAATTCATCTAAGGGTCCAAAATTCACCTTTGTTTTTGTTTCAAGGAGCA
* * * * * *
16380517 AATTTTCACCCTTGGATCAAGATTCCTAATGTGATCCAGTGGTCCAAATTGCTTACTGCCAGAGA
255 AACTTTCA-CCTTGGATCAAGATTCCCAATGTGATCCAATGGTCCAGATTGTTTACTGCCAAAGA
* * *
16380582 TGTGATTTTTAAAGCTCATAGATCAAGTGAAAATACCATTTTGCCCTTAATACAAAGTTTTTGGT
319 TGTGATTTTTAAAGCTCTTAGATCAAGTAAAAAGACCATTTTGCCCTTAATACAAAGTTTTTGGT
* * ** ** * * *
16380647 CTTTAGGTCGTTTTCTTAAAAAGTCAATATTCTTGTGTTCATTTTAGTGATTTTAAAG-TACCGA
384 CTTTAGGCCATTTTCTT-GGAAGTCAATGCTCTCGTGTTCATTTT-TTGATTTTAAAGCT-CCAA
* * * * * * * * * *
16380711 AGATCATGAAATAATGTGCAAGTAAATTTTGAAAATTTTCAAGAAAAT-TGACCTCAAGAATGTT
446 AAATCATGAAATAATATGAAACTAAAATTTGAAAAGTTTCATGAAAATCCGACCTTAAGAAGGTT
* * *
16380775 AAATTACAAAATTACCCCTATA---TATTTTAGTAATTTCACACCTCT-AAGGTACTACAATGGT
511 AAATTACAAAATTAACCCTA-AGGGTATTTTAGTAATTTCACACCTCTCAAGGTGCTACCATGGT
* ** *
16380836 TTTGAATGCACCAAATATCACAAAATATTTTAAAAGCATGATTTGGTAAGTTTTGCAAAAAACCA
575 TTTGAATGCACCAAAAATCATTAAATATTTTAAAAGCATGATTTGGAAAGTTTTGCAAAAAACCA
* * * * *
16380901 AGCTCTT-GAAGGTGAAATTATGAAATTATCCTTTAAGGGTATTTTGGTAATTTCATAACTTTTA
640 A-C-CTTAGAAAGTCAAATTATGAAATTA-CCTTTAAGGATATTTTGGTAATTTCA-CACATTTA
* * * * * **
16380965 TGGTGCAATCAAGGTTTTCAAAATTCTAAAAATCATCAAGTAATATCAAACTATGATCTAAAGTG
701 AGGTGCAATCAAGGTTTTCAAAATTCTAAAACTCATCAAATAATATCAAACCATGATCTGAAGCA
* * * * * *
16381030 TTTTATGAAATTTCAACCATGAGAAGGTCAAATTA--AAAA-AACCCCTAAGGGTATTTTTGTAA
766 TTTCACGAAATTTCAACCTTGGGAAGGTCAAATTACGAAAATAA-CCCTAAAGGTATTTTTATAA
* * *
16381092 TTTTACATATTCCAAGGTGTGA-CATGGGT
830 TTTTACACA-ACCAAGGTGTGATC-TTGGT
* * * * * **
16381121 TTTTAATGCATAAAAAAATTCTAAAAAAA-TCAATTATGATTTGGAAATTTTGAGGAAAATTTGA
1 TTTTAATGCAT-AAAAAATCCTAAAAAAATTCAATTATGATCTAGAAATTTTCACGAAAATTCAA
* * * *
16381185 CTTCGAGAAGATCAAATTATTAAAATACCCCTAAAGGGTATTTTGGTAATTTTA-TGCTTCTCGA
65 CTTCGAGAAG-TCAAATTATGAAAATACACATAAAGGGTATTTTGGTAATTTTACTCCTTCTCGA
* * * * * **
16381249 AATACAATCAAGGTTTTAATGCTTCAAAATTACAAATTTCAATTTTAATATACATTAGTTCCAAT
129 AGTGCAATCAAGGTTTTAGTGCTTCAAAATCACAAATTTCAATATTAATCCACATTAGTTCCAAT
* *
16381314 TTAATTGTCACAAATTCATCTAAGGGTCCAAAATTCACCTTTGTTTTTGTTTCAAGGACCAAACT
194 TTGATTGTCACAAATTCATCTAAGGGTCCAAAATTCACCTTTGTTTTTGTTTCAAGGAGCAAACT
* * * *
16381379 TTCATCCTTGGACCAAGATTCCCAATGTAATCCAATGG-CTTAGATTGTTTATTGCCAAAGATGT
259 TTCA-CCTTGGATCAAGATTCCCAATGTGATCCAATGGTC-CAGATTGTTTACTGCCAAAGATGT
* * * *
16381443 GATTTCTAAAGTTCTTAGATCAAGTGAAAAGACCATTTTG-CCTTAATGCAAAGTTTTTGGTCTT
322 GATTTTTAAAGCTCTTAGATCAAGTAAAAAGACCATTTTGCCCTTAATACAAAGTTTTTGGTCTT
* * * *
16381507 TAAGTCATTTTCTTGGAAGTCAATGCTCTCGTGCTT-ATAATTTTTTATTTTAAAGCTCCCAAAA
387 TAGGCCATTTTCTTGGAAGTCAATGCTCTCGTG-TTCAT--TTTTTGATTTTAAAGCTCCAAAAA
* * * * * *
16381571 TAATAAAATAATATGAAACTAAATTTTGGAAAGTTTCATCAAAATCCGACCTTAAGAAGGTCAAA
449 TCATGAAATAATATGAAACTAAAATTTGAAAAGTTTCATGAAAATCCGACCTTAAGAAGGTTAAA
* * * * * *
16381636 TTACAAAACTAACCCTAAGGGGTATTTTAGTAATTTTACACTTTTCAAGCTACTACCATGGTTTT
514 TTACAAAATTAACCCTAA-GGGTATTTTAGTAATTTCACACCTCTCAAGGTGCTACCATGGTTTT
* ** ** * * * *
16381701 GGATTTATAAAAAATAATTAGATATTTTAAAAGCATGATTTGGATAGTTTTGCAAAAAATCAACC
578 GAATGCACCAAAAATCATTAAATATTTTAAAAGCATGATTTGGAAAGTTTTGCAAAAAACCAACC
** * * * * * *
16381766 TTAGGATGGTCAAATTGTAAAATTACCCTTAACGATATTTTGGTAATTTCACACATTATAATGTA
643 TTA-GAAAGTCAAATTATGAAATTACCTTTAAGGATATTTTGGTAATTTCACACATT-TAAGGTG
* * ** * ** *
16381831 CAATTAAGGTTTTCAAAATTCTAAAATTTGTCAAATATTATCAATTCATGAGT-TGCAGCATTTC
706 CAATCAAGGTTTTCAAAATTCTAAAACTCATCAAATAATATCAAACCATGA-TCTGAAGCATTTC
* * * * * * * *
16381895 ATGAAATTTCAACTTTGGGAATGTCAAATTATGAAAATATCTCTAAAGATATTTTTATAATTTCA
770 ACGAAATTTCAACCTTGGGAAGGTCAAATTACGAAAATAACCCTAAAGGTATTTTTATAATTTTA
* *
16381960 CACCAACCAAGGTGTAATCTTAGT
835 CA-CAACCAAGGTGTGATCTTGGT
* * *
16381984 TTTTAATGCAT-AAAAATCCTTAAAAAAATTCAATTATGATCTATATATTTTCACAAAAATTCAA
1 TTTTAATGCATAAAAAATCC-TAAAAAAATTCAATTATGATCTAGAAATTTTCACGAAAATTCAA
*
16382048 CTTCGAGAAGTCTAAATTATGAAAATACACATAAAGGATATTTTGGTAATTTTAC-CCTTCTCGA
65 CTTCGAGAAGTC-AAATTATGAAAATACACATAAAGGGTATTTTGGTAATTTTACTCCTTCTCGA
* * * * *
16382112 AGTGGAATCAAGGTTTTAGTGCTTCAAAATCATAAATTTCAGTCTTAATCCACATTGGTTCCAAT
129 AGTGCAATCAAGGTTTTAGTGCTTCAAAATCACAAATTTCAATATTAATCCACATTAGTTCCAAT
* *
16382177 TTGATTGTCACAAATTCATAC-AAAGGTCCAAAATTCACCTTTGTTATTGTTTCAAGGAGCAAAC
194 TTGATTGTCACAAATTCAT-CTAAGGGTCCAAAATTCACCTTTGTTTTTGTTTCAAGGAGCAAAC
* * * * *
16382241 TTTCACATTTGGATCAACATTCCCAAAGTGATCCAATGATCCTGATTGTTTACTGCCAAAGATGT
258 TTTCAC-CTTGGATCAAGATTCCCAATGTGATCCAATGGTCCAGATTGTTTACTGCCAAAGATGT
* * * ** * ***
16382306 GATTTTTAAAACTCTTTGATCGAGTAAAAAGACC-TTTTGCCCCAAATGCAAAGTTTTCAATCTT
322 GATTTTTAAAGCTCTTAGATCAAGTAAAAAGACCATTTTGCCCTTAATACAAAGTTTTTGGTCTT
* * * * * *
16382370 TAGGCCATTTTCTTAGAAATCAATGTTCTCGTGTTCATATTTGTAATTTTAAAGCACCAAAAATC
387 TAGGCCATTTTCTTGGAAGTCAATGCTCTCGTGTTCAT-TTTTTGATTTTAAAGCTCCAAAAATC
* ** * * ** * *
16382435 ATGAAATGATAAAAAACTAAAATCTGAAATGTTTTGTGAAAATCTGATCTTGAA-AAGGTTAAAT
451 ATGAAATAATATGAAACTAAAATTTGAAAAGTTTCATGAAAATCCGACCTT-AAGAAGGTTAAAT
* ** ** * * *
16382499 TACAAAATTATCCCTAAAAAGTATTTTAGTAAATTT-TGATCTCCCAAGGTGTTACCATGGTTTT
515 TACAAAATTAACCCT-AAGGGTATTTTAGT-AATTTCACACCTCTCAAGGTGCTACCATGGTTTT
* * * * * ** * *
16382563 AAATGTAGCAAAAATCATTAAATATTTTAAAAGCATGATCT-GAAAGGATTCACAAAAAAACGAC
578 GAATGCACCAAAAATCATTAAATATTTTAAAAGCATGATTTGGAAA-GTTTTGCAAAAAACCAAC
* * * * * * * * **
16382627 CTCTAAAAAGTCAAATTACGAAATTACCCTTAAGAGGTATTATGGCAATTTCAAACTTTCTAACA
642 CT-TAGAAAGTCAAATTATGAAATTACCTTTAAG-GATATTTTGGTAATTTCACACATT-TAAGG
* * * * **
16382692 TGCAATCAAGGTTTTCAAAATTTTAAAACTCATTAAATAATATCAAACCTTGATCTGGAGTGTTT
704 TGCAATCAAGGTTTTCAAAATTCTAAAACTCATCAAATAATATCAAACCATGATCTGAAGCATTT
* * * * * *
16382757 CACGAAATTTTAACATTGGTAAAGTCAAATTACAAAAAT-ACCCCAAAGGGTATTTTTATAATTT
769 CACGAAATTTCAACCTTGGGAAGGTCAAATTACGAAAATAACCCTAAA-GGTATTTTTATAATTT
*** *
16382821 TACATTTCTAAAGGTGTGATCTAT-GT
833 TACACAAC-CAAGGTGTGATCT-TGGT
* * * * * **
16382847 TTTTAATGCATTAAAAA-CCTAAAAAAATATTC-ATTATGATTTGGATATTTTCATGAAAATTTG
1 TTTTAATGCATAAAAAATCCT-AAAAAA-ATTCAATTATGATCTAGAAATTTTCACGAAAATTCA
* * * * * * * * **
16382910 ACTTTGAGAAGATAAAATTACGAAAATAGACATAAAAGATATTTTGATAATTTTAC-CCTTATTA
64 ACTTCGAGAAG-TCAAATTATGAAAATACACATAAAGGGTATTTTGGTAATTTTACTCCTTCTCG
* * * * * *
16382974 AAGTTCAATCAATTGCTTTAATGCTTC-AAATCACAAATTTCAATATTAATCCATATTGGTTCCA
128 AAGTGCAATCAA-GGTTTTAGTGCTTCAAAATCACAAATTTCAATATTAATCCACATTAGTTCCA
* *
16383038 ATTTGATTGTCATAAATTCAT-TGAAGAGTCC-AAA---A-------------TT-------C--
192 ATTTGATTGTCACAAATTCATCT-AAGGGTCCAAAATTCACCTTTGTTTTTGTTTCAAGGAGCAA
* * * * *
16383076 A----C-CCTTGGATCAAGATTCCTAATGTGATCGAACGGTCCAGATTGTTTACTACCAAAGATA
256 ACTTTCACCTTGGATCAAGATTCCCAATGTGATCCAATGGTCCAGATTGTTTACTGCCAAAGATG
* * * * * * * * **
16383136 TGAATTTTAAAGCTCTTGGATTAAGTTAAAAGACCATTTCGTCCATAGTACAAAGTTTTCAGTCT
321 TGATTTTTAAAGCTCTTAGATCAAGTAAAAAGACCATTTTGCCCTTAATACAAAGTTTTTGGTCT
* * * * * * * * * * * *
16383201 TCAAGCTATTTTCTAGGAAATCGAA-GTTTTCGTGTT--TGTTTTGTAATTTATAGCACAAAAAA
386 TTAGGCCATTTTCTTGGAAGTC-AATGCTCTCGTGTTCATTTTTTG-ATTTTAAAGCTCCAAAAA
* * * * * *** * *
16383263 TCAAGAAATAATATGGAACCAAAATCT-AGAAAGTTTCATGAAAGTTAAACCTTAAAAAGGTCAA
449 TCATGAAATAATATGAAACTAAAATTTGA-AAAGTTTCATGAAAATCCGACCTTAAGAAGGTTAA
* * * * *
16383327 ATTACAAAATT-ACTCTTAAGGGGTATTTTAGTAATTTCACACATCCCCAA-CTACTACCATGGT
513 ATTACAAAATTAAC-CCTAA-GGGTATTTTAGTAATTTCACACCT-CTCAAGGTGCTACCATGGT
* * * * * * *
16383390 TTTGAATGCACCAAAACTCATCAAATATTTTAAAAGTATGATCTGAAAAG-CTT-CATGAAAAAT
575 TTTGAATGCACCAAAAATCATTAAATATTTTAAAAGCATGATTTGGAAAGTTTTGCA--AAAAAC
** * * *
16383453 TGACCTTAGAAAGATCAAATTA-CAAATTTACCCTTAAATGG-TATTTCGGTAATTTCACA-ACT
638 CAACCTTAGAAAG-TCAAATTATGAAA-TTA-CCTTTAA-GGATATTTTGGTAATTTCACACA-T
* * * ** * * *
16383515 TCCATGGTG-ATATCAA-GTTTTCAAAATTCTAAAAATCATCAAATAGCATTAAACCATTATTTG
698 T-TAAGGTGCA-ATCAAGGTTTTCAAAATTCTAAAACTCATCAAATAATATCAAACCATGATCTG
* * * * * * * **
16383578 TAATG-TTTTGTA--AAATTCCAACCTTGTGAAGGTCAAGTTA-TAAAAAAACCCCTAAAACTAT
761 -AA-GCATTT-CACGAAATTTCAACCTTGGGAAGGTCAAATTACGAAAATAA-CCCTAAAGGTAT
* ** *
16383639 TTTTGTAATTTCATAC-CTCCCAAGTTGTGAT-TTGGGT
822 TTTTATAATTT--TACACAACCAAGGTGTGATCTT-GGT
* * * * * * *
16383676 TTTTGATACATCAAAAATCCTAAAAAAAAAAAAAATCAATTATGATTTTGAAATTTTCATGAAAA
1 TTTTAATGCATAAAAAATCCT------AAAAAAATTCAATTATGATCTAGAAATTTTCACGAAAA
** * * * * * *
16383741 TTTGACTT-TATGAGAGCCAATTTAAGAAAATAC-CACTAAAGGG-ATTTTGTTAATTTTAC-CT
60 TTCAACTTCGA-GA-AGTCAAATTATGAAAATACACA-TAAAGGGTATTTTGGTAATTTTACTCC
* * * * *
16383802 TTCTCGAAGTGTAACCAAGATTTTTAGTGCTTCAAAATCATAAACTTCAAT-TGTAATCCACATT
122 TTCTCGAAGTGCAATCAAG-GTTTTAGTGCTTCAAAATCACAAATTTCAATAT-TAATCCACATT
* ** * * * * * * * * *
16383866 GGTTTTAATTTGATTGTCATAAATTCACCCAATGGTACAAAATTCACCCTCGTTTTTATTTTAAG
185 AGTTCCAATTTGATTGTCACAAATTCATCTAAGGGTCCAAAATTCACCTTTGTTTTTGTTTCAAG
* * ** * * *
16383931 GAGCAAACTTTGACCCTTGGATGAAGATTCCCAATGTGATCCAACAGTCTAGATTGTTTACTACT
250 GAGCAAACTTTCA-CCTTGGATCAAGATTCCCAATGTGATCCAATGGTCCAGATTGTTTACTGCC
* * * * * * *
16383996 AGAGATGTGATTTTTAAA-ATTTTTGCATCAAGTGAAAAA-ACCATATAGTCAC-TAATACAAAG
314 AAAGATGTGATTTTTAAAGCTCTTAG-ATCAAGT-AAAAAGACCATTTTG-CCCTTAATACAAAG
* * * * * * *
16384058 TTTTCGATCCTTAAGCCATTTTCTT-GAA---AA---T-T-GATG--C-TCTTATGTTTTTAAAG
376 TTTTTGGTCTTTAGGCCATTTTCTTGGAAGTCAATGCTCTCG-TGTTCATTTTTTGATTTTAAAG
* * * * ** * *
16384111 CACTAAAAACCATGAAATAATATGAAACTAAAATCT-AAAAGTTTTGTGAAAATCCAACCAT-AG
440 CTCCAAAAATCATGAAATAATATGAAACTAAAATTTGAAAAGTTTCATGAAAATCCGACCTTAAG
* * * * *
16384174 AAAGGTCAAATTACAAAACT-ACCCGTAGAAGGTATTTTGGGAATTTCACACCTCTCAAGGTGCT
505 -AAGGTTAAATTACAAAATTAACCC-TA-AGGGTATTTTAGTAATTTCACACCTCTCAAGGTGC-
* * * * * **
16384238 TACAATGGTTTTGAATGCACAAAAAAATCATCAAATATTTAAAAAGCATGATCTAAAAAG-TTT-
566 TACCATGGTTTTGAATGCAC-CAAAAATCATTAAATATTTTAAAAGCATGATTTGGAAAGTTTTG
* * * * *
16384301 CAAGAAAATTCAACCTTGGGAAGGTCAAATTACG-AATTACCCTTAAGGGATATTTTGGTAATTT
630 CAA-AAAA-CCAACCTT-AGAAAGTCAAATTATGAAATTACCTTTAA-GGATATTTTGGTAATTT
* * * *** *
16384365 CATACTTTTCAAGATATGATCAAGGTTTTCAAAATTC-AAAAATCATCAAATAATATCAAACCAT
691 CACACATTT-AAGGTGCAATCAAGGTTTTCAAAATTCTAAAACTCATCAAATAATATCAAACCAT
* * * * * * * * *
16384429 GATCTGGAGTATTTCATGAAATTTCGATCTTAGGATGGTCAAATTACAAAAAT-ACCCCAAAGGA
755 GATCTGAAGCATTTCACGAAATTTCAACCTTGGGAAGGTCAAATTACGAAAATAACCCTAAAGG-
* * ** **
16384493 TATTTTTGTAATTTCACACCTCTCAAGGTGTGATCAAGGT
819 TATTTTTATAATTTTACACAAC-CAAGGTGTGATCTTGGT
* * * **
16384533 TTTTAATGCATGAAAAATCCTTAAAAAAATTCAATTATGATCTAGAAAATTTCATGAAAATTTGA
1 TTTTAATGCATAAAAAATCC-TAAAAAAATTCAATTATGATCTAGAAATTTTCACGAAAATTCAA
* ** * * * * *
16384598 TTTTAAGAAAGGC-AA--ATGAAGATAC-CTTAAACGGTATTTTGGTAATTTCAC-CCTTCTCGA
65 CTTCGAG-AAGTCAAATTATGAAAATACACATAAAGGGTATTTTGGTAATTTTACTCCTTCTCGA
* * *
16384658 AATGCAATCAAGGTTTTTAGTGCTCCAAAATCACAAATTTCAATCTTAATCCACATTAGTTCCAA
129 AGTGCAATCAAGG-TTTTAGTGCTTCAAAATCACAAATTTCAATATTAATCCACATTAGTTCCAA
* * * * * *
16384723 TTTAATTGTCACAAAGTC-TCCCAAGGGTCTAAAATTCACCTTTGTTTTTCTTTCAAGGACCAAA
193 TTTGATTGTCACAAATTCAT-CTAAGGGTCCAAAATTCACCTTTGTTTTTGTTTCAAGGAGCAAA
* * * * * *
16384787 CTTTCACCTTTTGATCAAGATTCCTAATGTGATCCAATGGTCCACATTGTTTATTGTCAAAAATG
257 CTTTCACC-TTGGATCAAGATTCCCAATGTGATCCAATGGTCCAGATTGTTTACTGCCAAAGATG
* * * * * * *
16384852 TGATTCTTAAAGC-CCTCGAATCAAATGAAAAGATCA-TTTGCCCTTAATACAAAGTTTTTAGTC
321 TGATTTTTAAAGCTCTTAG-ATCAAGTAAAAAGACCATTTTGCCCTTAATACAAAGTTTTTGGTC
* * * * * * * **
16384915 TTCAGTCTATTTTGTTGGTAAGTCGATGCTCTTGTGTTCATTTTTGTGATGTTAAAGCAACAAAA
385 TTTAGGCCATTTTCTTGG-AAGTCAATGCTCTCGTGTTCATTTTT-TGATTTTAAAGCTCCAAAA
16384980 ATCATGAAATAATATGAAACTAAAATTTGAAAAGTTTCATGAAAATC
448 ATCATGAAATAATATGAAACTAAAATTTGAAAAGTTTCATGAAAATC
16385027 TAACTTTGGG
Statistics
Matches: 4454, Mismatches: 928, Indels: 489
0.76 0.16 0.08
Matches are distributed among these distances:
827 1 0.00
828 7 0.00
829 123 0.03
830 195 0.04
831 95 0.02
832 51 0.01
833 3 0.00
834 45 0.01
835 114 0.03
836 5 0.00
837 1 0.00
839 2 0.00
846 2 0.00
847 2 0.00
848 40 0.01
849 204 0.05
850 3 0.00
851 1 0.00
852 47 0.01
853 3 0.00
855 10 0.00
856 104 0.02
857 398 0.09
858 332 0.07
859 487 0.11
860 181 0.04
861 182 0.04
862 399 0.09
863 759 0.17
864 192 0.04
865 167 0.04
866 186 0.04
867 108 0.02
868 5 0.00
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (857 bp):
TTTTAATGCATAAAAAATCCTAAAAAAATTCAATTATGATCTAGAAATTTTCACGAAAATTCAAC
TTCGAGAAGTCAAATTATGAAAATACACATAAAGGGTATTTTGGTAATTTTACTCCTTCTCGAAG
TGCAATCAAGGTTTTAGTGCTTCAAAATCACAAATTTCAATATTAATCCACATTAGTTCCAATTT
GATTGTCACAAATTCATCTAAGGGTCCAAAATTCACCTTTGTTTTTGTTTCAAGGAGCAAACTTT
CACCTTGGATCAAGATTCCCAATGTGATCCAATGGTCCAGATTGTTTACTGCCAAAGATGTGATT
TTTAAAGCTCTTAGATCAAGTAAAAAGACCATTTTGCCCTTAATACAAAGTTTTTGGTCTTTAGG
CCATTTTCTTGGAAGTCAATGCTCTCGTGTTCATTTTTTGATTTTAAAGCTCCAAAAATCATGAA
ATAATATGAAACTAAAATTTGAAAAGTTTCATGAAAATCCGACCTTAAGAAGGTTAAATTACAAA
ATTAACCCTAAGGGTATTTTAGTAATTTCACACCTCTCAAGGTGCTACCATGGTTTTGAATGCAC
CAAAAATCATTAAATATTTTAAAAGCATGATTTGGAAAGTTTTGCAAAAAACCAACCTTAGAAAG
TCAAATTATGAAATTACCTTTAAGGATATTTTGGTAATTTCACACATTTAAGGTGCAATCAAGGT
TTTCAAAATTCTAAAACTCATCAAATAATATCAAACCATGATCTGAAGCATTTCACGAAATTTCA
ACCTTGGGAAGGTCAAATTACGAAAATAACCCTAAAGGTATTTTTATAATTTTACACAACCAAGG
TGTGATCTTGGT
Found at i:16386734 original size:110 final size:112
Alignment explanation
Indices: 16386597--16386821 Score: 314
Period size: 110 Copynumber: 2.0 Consensus size: 112
16386587 ATTTTTTAGC
* *
16386597 CAAAAATGCCTTGAATAACCCCTAAAAAAAATTTTAATGGGGTTATTGTAGGTG-TTTTTGGCCA
1 CAAAAATGCCTTGAATAACCCCTAAAAAAAATTTTAATGGAGTTATTGAAGGTGTTTTTTGGCCA
16386661 AAAA-GCCCTTCAATAATCCC-TCATAAAATTTTATAACATGATTACT
66 AAAACG-CCTTCAATAATCCCTTCATAAAATTTTATAACATGATTACT
* * ** *
16386707 CAAAAATGCCTTTAATAA-TCCTAAAAAACTTTTTTAATGGAGTTATTGAAGGTGTTTTTTTGCC
1 CAAAAATGCCTTGAATAACCCCTAAAAAA-AATTTTAATGGAGTTATTGAAGGTGTTTTTTGGCC
* * *
16386771 AAAAACGCCTTCAATAATCCCTTCATAAATTTTTATGACGTGATTACT
65 AAAAACGCCTTCAATAATCCCTTCATAAAATTTTATAACATGATTACT
16386819 CAA
1 CAA
16386822 GGCTTTTTTG
Statistics
Matches: 101, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
109 9 0.09
110 38 0.38
111 27 0.27
112 27 0.27
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (112 bp):
CAAAAATGCCTTGAATAACCCCTAAAAAAAATTTTAATGGAGTTATTGAAGGTGTTTTTTGGCCA
AAAACGCCTTCAATAATCCCTTCATAAAATTTTATAACATGATTACT
Found at i:16386905 original size:35 final size:36
Alignment explanation
Indices: 16386844--16386919 Score: 109
Period size: 35 Copynumber: 2.1 Consensus size: 36
16386834 TAAAAATACC
* **
16386844 TTGAATAATCTTGAAAAAAAAATTTTAATGGGGTTA
1 TTGAATAATCCTGAAAAAAAAATTTTAATAAGGTTA
*
16386880 TTGAATAATCCT-AAAAAAAATTTTTAATAAGGTTA
1 TTGAATAATCCTGAAAAAAAAATTTTAATAAGGTTA
16386915 TTGAA
1 TTGAA
16386920 GGCGTTTCTG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
35 25 0.69
36 11 0.31
ACGTcount: A:0.46, C:0.04, G:0.13, T:0.37
Consensus pattern (36 bp):
TTGAATAATCCTGAAAAAAAAATTTTAATAAGGTTA
Found at i:16387000 original size:162 final size:163
Alignment explanation
Indices: 16386720--16387015 Score: 409
Period size: 162 Copynumber: 1.8 Consensus size: 163
16386710 AAATGCCTTT
** * * * * *
16386720 AATAATCCTAAAAAACTTTTTTAATGGAGTTATTGAAGGTGTTTTTTTGCCAAAAACGCCTTCAA
1 AATAATCCTAAAAAAAATTTTTAATAGAGTTATTGAAGGCGTTTTCTGGCCAAAAACACCTTCAA
* * * * * *
16386785 TAATCCCTTCATAAATTTTTATGACGTGATTACTCAAGGCTTTTTTGGCTAAAAATACCTTGAAT
66 TAATCCCTCCAAAAAATTTTATGACGTGATTACTCAAGCCATTTTTAGCTAAAAATACCTTGAAT
16386850 AATCTTGAAAAAAAAATTTTAATGGGGTTATTG
131 AATCTTGAAAAAAAAATTTTAATGGGGTTATTG
16386883 AATAATCCTAAAAAAAATTTTTAATA-AGGTTATTGAAGGCG-TTTCTGGCCAAAAACACCTTCA
1 AATAATCCTAAAAAAAATTTTTAATAGA-GTTATTGAAGGCGTTTTCTGGCCAAAAACACCTTCA
* * *
16386946 ATAATCCC-CCAAAAAAATTTTATGACGTGATTACTTATGCCATTTTTAGCTAAAAATGCCTTGA
65 ATAATCCCTCC-AAAAAATTTTATGACGTGATTACTCAAGCCATTTTTAGCTAAAAATACCTTGA
16387010 ATAATC
129 ATAATC
16387016 CCGAAAAGAA
Statistics
Matches: 115, Mismatches: 16, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
161 1 0.01
162 79 0.69
163 35 0.30
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (163 bp):
AATAATCCTAAAAAAAATTTTTAATAGAGTTATTGAAGGCGTTTTCTGGCCAAAAACACCTTCAA
TAATCCCTCCAAAAAATTTTATGACGTGATTACTCAAGCCATTTTTAGCTAAAAATACCTTGAAT
AATCTTGAAAAAAAAATTTTAATGGGGTTATTG
Found at i:16387228 original size:63 final size:63
Alignment explanation
Indices: 16387035--16387228 Score: 157
Period size: 63 Copynumber: 3.1 Consensus size: 63
16387025 AATTTAATAG
* * * *
16387035 GATTATTAAAGGCATTTTTGGCTTAAACA-CCTTCAATAATCTCCTCATAAATTTTTATAACAT
1 GATTATTAAAGGCATTTTTGAC-AAAAAATCCTTCAATAATCTCCTCATAAATTTTTATGACAT
* * * * *** *
16387098 GATTACTCAAGGCATTTTTGGTCAAAAATAT-CTTGAATAATCTCGAAAAAAAATTTTTAATG--
1 GATTATTAAAGGCATTTTT-GACAAAAA-ATCCTTCAATAATCTC-CTCATAAATTTTT-ATGAC
*
16387160 -G
62 AT
* *
16387161 GATTATTAAAGGCATTTATGACAAAAAATCCTTTAATAATC-CCTTCATAAATTTTTATGACAT
1 GATTATTAAAGGCATTTTTGACAAAAAATCCTTCAATAATCTCC-TCATAAATTTTTATGACAT
16387224 GATTA
1 GATTA
16387229 CTCAAGGTGC
Statistics
Matches: 99, Mismatches: 22, Indels: 20
0.70 0.16 0.14
Matches are distributed among these distances:
60 3 0.03
61 12 0.12
62 17 0.17
63 41 0.41
64 15 0.15
65 9 0.09
66 2 0.02
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (63 bp):
GATTATTAAAGGCATTTTTGACAAAAAATCCTTCAATAATCTCCTCATAAATTTTTATGACAT
Found at i:16387331 original size:126 final size:124
Alignment explanation
Indices: 16386880--16387330 Score: 434
Period size: 126 Copynumber: 3.6 Consensus size: 124
16386870 AATGGGGTTA
** * * * * *
16386880 TTGAATAATCCTAAAAAAAATTTTTAATAAGG-TTATTGAAGGCGTTTCTGGCCAAAAACACCTT
1 TTGAATAATCC-CGAAAAAATTTTTAAT-GGGATTATTAAAGGCATTTCTGGCTAAAAA-TCCTT
* * * * * *
16386944 CAATAATCCCCCAAAAAAATTTTATGACGTGATTACT-TA-TGCCATTTTTAGCTAAAAATGCC
63 CAATAATCCCTC-ATAAATTTTTATGACATGATTACTCAAGTG-CATTTTTAGCCAAAAATGCC
* * * *
16387006 TTGAATAATCCCGAAAAGAA-ATTTAATAGGATTATTAAAGGCATTTTTGGCTTAAACA-CCTTC
1 TTGAATAATCCCGAAAA-AATTTTTAATGGGATTATTAAAGGCATTTCTGGC-TAAAAATCCTTC
* * * **
16387069 AATAATCTCCTCATAAATTTTTATAACATGATTACTCAAG-GCATTTTTGGTCAAAAATATC
64 AATAATC-CCTCATAAATTTTTATGACATGATTACTCAAGTGCATTTTTAGCCAAAAATGCC
* * * * *
16387130 TTGAATAATCTCGAAAAAAAATTTTTAATGGGATTATTAAAGGCATTTATGACAAAAAATCCTTT
1 TTGAATAATCCCG--AAAAAATTTTTAATGGGATTATTAAAGGCATTTCTGGCTAAAAATCCTTC
16387195 AATAATCCCTTCATAAATTTTTATGACATGATTACTCAAGGTGC-TTTTT-GCCAAAAATGCC
64 AATAATCCC-TCATAAATTTTTATGACATGATTACTCAA-GTGCATTTTTAGCCAAAAATGCC
* * *
16387256 TTGAATAATCCCGAAAATATTTTTGAATGGGGA-TATTTAATGCATTTCTGGCTAAAAATGCCTT
1 TTGAATAATCCCGAAAAAATTTTT-AAT-GGGATTATTAAAGGCATTTCTGGCTAAAAAT-CCTT
16387320 CAATAATCCCT
63 CAATAATCCCT
16387331 TTATAAAAAT
Statistics
Matches: 270, Mismatches: 39, Indels: 33
0.79 0.11 0.10
Matches are distributed among these distances:
124 72 0.27
125 65 0.24
126 125 0.46
127 6 0.02
128 2 0.01
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (124 bp):
TTGAATAATCCCGAAAAAATTTTTAATGGGATTATTAAAGGCATTTCTGGCTAAAAATCCTTCAA
TAATCCCTCATAAATTTTTATGACATGATTACTCAAGTGCATTTTTAGCCAAAAATGCC
Found at i:16390494 original size:144 final size:143
Alignment explanation
Indices: 16390282--16390559 Score: 355
Period size: 144 Copynumber: 1.9 Consensus size: 143
16390272 TGAAAATTCA
* * * * ***
16390282 ACCTCGAAAATGTCAAATTATGAAATTACCCATAATGTGTATTTTGGTAATTTCACACCTTTTGA
1 ACCTCAAAAAGGTCAAATTATGAAATTACCCATAA-GAGTATTTTGGTAATTTCACACATTCCCA
** * *
16390347 GGTTCTACCATGGTTTTGAATGCACCTAAAAT-AATTAGATATTTTAAAAGCATGATCT-CAAAA
65 GGTTCTACCATGGTTTTGAATGCACAAAAAATCAA-CAAATATTTTAAAAGCATGATCTGC-AAA
16390410 GTTTCATGAAAGTCCC
128 GTTTCATGAAAGTCCC
*
16390426 ACCTCAAAAAGGTCAAATTATGAAATTACCGCTATAA-AGTATTTTGGTAATTTCACATATTCCC
1 ACCTCAAAAAGGTCAAATTATGAAATTACC-C-ATAAGAGTATTTTGGTAATTTCACACATTCCC
* * *
16390490 AGGTTTTGCCATGGTTTTGAATGCTCAAAAAATCAACAAATATTTTAAAAGCATGATCTGCAAAG
64 AGGTTCTACCATGGTTTTGAATGCACAAAAAATCAACAAATATTTTAAAAGCATGATCTGCAAAG
16390555 TTTCA
129 TTTCA
16390560 CAAAAAACCA
Statistics
Matches: 115, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
144 107 0.93
145 4 0.03
146 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.34
Consensus pattern (143 bp):
ACCTCAAAAAGGTCAAATTATGAAATTACCCATAAGAGTATTTTGGTAATTTCACACATTCCCAG
GTTCTACCATGGTTTTGAATGCACAAAAAATCAACAAATATTTTAAAAGCATGATCTGCAAAGTT
TCATGAAAGTCCC
Found at i:16390588 original size:144 final size:143
Alignment explanation
Indices: 16390296--16390621 Score: 325
Period size: 144 Copynumber: 2.3 Consensus size: 143
16390286 CGAAAATGTC
* * ***
16390296 AAATTATGAAATTACCCATAATGTGTATTTTGGTAATTTCACACCTTTTGAGGTTCTACCATGGT
1 AAATTATGAAATTACCCATAA-GAGTATTTTGGTAATTTCACACATTCCCAGGTTCTACCATGGT
** * * ** ** *
16390361 TTTGAATGCACCTAAAATAATTAGATATTTTAAAAGCATGATCTCAAAAGTTTCATGAAAGTCCC
65 TTTGAATGCACAAAAAATAATCAAATATTTTAAAAGCATGATCTCAAAAGTTTCACAAAAAACCA
* *
16390426 ACCTCAAAAAGGTC
130 ACCTCAAAAAGATA
* * *
16390440 AAATTATGAAATTACCGCTATAA-AGTATTTTGGTAATTTCACATATTCCCAGGTTTTGCCATGG
1 AAATTATGAAATTACC-C-ATAAGAGTATTTTGGTAATTTCACACATTCCCAGGTTCTACCATGG
*
16390504 TTTTGAATGCTCAAAAAATCAA-CAAATATTTTAAAAGCATGATCTGC-AAAGTTTCACAAAAAA
64 TTTTGAATGCACAAAAAAT-AATCAAATATTTTAAAAGCATGATCT-CAAAAGTTTCACAAAAAA
* *
16390567 CCAACCTCGAGAAGATA
127 CCAACCTCAAAAAGATA
** * * * *
16390584 AAATTACAAAATAACTCTTAAGGGGTATTTTGGTAATT
1 AAATTATGAAATTACCCATAA-GAGTATTTTGGTAATT
16390622 ATATACATTT
Statistics
Matches: 148, Mismatches: 28, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
142 3 0.02
143 1 0.01
144 136 0.92
145 4 0.03
146 4 0.03
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.33
Consensus pattern (143 bp):
AAATTATGAAATTACCCATAAGAGTATTTTGGTAATTTCACACATTCCCAGGTTCTACCATGGTT
TTGAATGCACAAAAAATAATCAAATATTTTAAAAGCATGATCTCAAAAGTTTCACAAAAAACCAA
CCTCAAAAAGATA
Found at i:16405357 original size:43 final size:43
Alignment explanation
Indices: 16405302--16405485 Score: 119
Period size: 43 Copynumber: 4.3 Consensus size: 43
16405292 AAGGTTCAAC
* * *
16405302 AAACAAATTTAAATTAAGAAATGAGCTTTTCTACTTA-AAGGGT
1 AAACAACTTTAAAGTAAGAAATGAGCTATTCTACTTAGAA-GGT
* * * *
16405345 AGACAACTTTAAAGTAGGAAATGAGCTATTCTATTTAGAAGTT
1 AAACAACTTTAAAGTAAGAAATGAGCTATTCTACTTAGAAGGT
* * * * * *
16405388 AAACAACTTTAAAAT-AGGAATTAGGCTCTTATA-TTCA-AAGCT
1 AAACAACTTTAAAGTAAGAAATGA-GCTATTCTACTT-AGAAGGT
* * * **
16405430 AAACAACTTTAAAATAAGGAATGGGCTCCTCTA-TTCAG-AGGCT
1 AAACAACTTTAAAGTAAGAAATGAGCTATTCTACTT-AGAAGG-T
16405473 AAACAACTTTAAA
1 AAACAACTTTAAA
16405486 ATAGCCTTCT
Statistics
Matches: 115, Mismatches: 20, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
42 39 0.34
43 74 0.64
44 2 0.02
ACGTcount: A:0.42, C:0.13, G:0.15, T:0.30
Consensus pattern (43 bp):
AAACAACTTTAAAGTAAGAAATGAGCTATTCTACTTAGAAGGT
Found at i:16405486 original size:43 final size:42
Alignment explanation
Indices: 16405347--16405489 Score: 171
Period size: 43 Copynumber: 3.4 Consensus size: 42
16405337 TAAAGGGTAG
* * * * *
16405347 ACAACTTTAAAGTAGGAAATGAGCTATTCTATTTAGAAGTTAA
1 ACAACTTTAAAATAGG-AATGGGCTCTTCTATTCAGAAGCTAA
* *
16405390 ACAACTTTAAAATAGGAATTAGGCTCTTATATTCA-AAGCTAA
1 ACAACTTTAAAATAGGAA-TGGGCTCTTCTATTCAGAAGCTAA
* *
16405432 ACAACTTTAAAATAAGGAATGGGCTCCTCTATTCAGAGGCTAA
1 ACAACTTTAAAAT-AGGAATGGGCTCTTCTATTCAGAAGCTAA
16405475 ACAACTTTAAAATAG
1 ACAACTTTAAAATAG
16405490 CCTTCTAATA
Statistics
Matches: 86, Mismatches: 11, Indels: 7
0.83 0.11 0.07
Matches are distributed among these distances:
42 36 0.42
43 50 0.58
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.29
Consensus pattern (42 bp):
ACAACTTTAAAATAGGAATGGGCTCTTCTATTCAGAAGCTAA
Found at i:16407081 original size:55 final size:56
Alignment explanation
Indices: 16406973--16407079 Score: 157
Period size: 56 Copynumber: 1.9 Consensus size: 56
16406963 ATTAGGCAGA
*
16406973 TTTTTATTTAAGGAAAATTTATACTTTCAACTTTTCCTTAAAACCTCATTTTTATT
1 TTTTTATTTAAGGAAAATTTATACTTTCAACTTTTCCTTAAAACATCATTTTTATT
* *
16407029 TTTTTATTTAA-GAAAATTTGATACTTTCAATTTTTTCTTAAAA-AT-ATTTTT
1 TTTTTATTTAAGGAAAATTT-ATACTTTCAACTTTTCCTTAAAACATCATTTTT
16407080 TAATATATTT
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
54 6 0.13
55 9 0.19
56 32 0.68
ACGTcount: A:0.32, C:0.10, G:0.04, T:0.54
Consensus pattern (56 bp):
TTTTTATTTAAGGAAAATTTATACTTTCAACTTTTCCTTAAAACATCATTTTTATT
Found at i:16407185 original size:54 final size:57
Alignment explanation
Indices: 16407100--16407265 Score: 202
Period size: 55 Copynumber: 3.0 Consensus size: 57
16407090 TTCTGAAAAA
* * **
16407100 ATTTTATTT-TTTAAGGAAAATTGATAATTTCAACTTTTCTTTAA-AACTTCTTTTTT
1 ATTTT-TTTATTTAAGAAAAATTGATACTTTCAACTTTTCCCTAACAACTTCTTTTTT
*
16407156 A-TTTTTTATTTAA-AAAAATTGATACTTTCAACTTTTCCCTAACACCTTCTTTTTT
1 ATTTTTTTATTTAAGAAAAATTGATACTTTCAACTTTTCCCTAACAACTTCTTTTTT
* *
16407211 ATTTTTTTTTTTAAGAAAAATTGATAC-TTCAACTTTTCCAC-AA-AACTTTTTTTTT
1 ATTTTTTTATTTAAGAAAAATTGATACTTTCAACTTTTCC-CTAACAACTTCTTTTTT
16407266 TGAAAATTTT
Statistics
Matches: 97, Mismatches: 8, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
54 28 0.29
55 30 0.31
56 26 0.27
57 13 0.13
ACGTcount: A:0.30, C:0.13, G:0.04, T:0.53
Consensus pattern (57 bp):
ATTTTTTTATTTAAGAAAAATTGATACTTTCAACTTTTCCCTAACAACTTCTTTTTT
Found at i:16407242 original size:56 final size:55
Alignment explanation
Indices: 16407100--16407295 Score: 207
Period size: 56 Copynumber: 3.5 Consensus size: 55
16407090 TTCTGAAAAA
* * * ** *
16407100 ATTTTATTTTTTAAGGAAAATTGATAATTTCAACTTTTCTTTAAAACTTCTTTTTT
1 ATTTTTTTTTTTAAGAAAAATTGAT-ACTTCAACTTTTCCCTAAACCTTCTTTTTT
*
16407156 A-TTTTTTATTTAA-AAAAATTGATACTTTCAACTTTTCCCTAACACCTTCTTTTTT
1 ATTTTTTTTTTTAAGAAAAATTGATAC-TTCAACTTTTCCCTAA-ACCTTCTTTTTT
* * *
16407211 ATTTTTTTTTTTAAGAAAAATTGATACTTCAACTTTTCCACAAAACTTTTTTTTTT
1 ATTTTTTTTTTTAAGAAAAATTGATACTTCAACTTTTCC-CTAAACCTTCTTTTTT
*
16407267 GAAAATTTTTATTTTTAAGAAAAATTGAT
1 ----ATTTTTTTTTTTAAGAAAAATTGAT
16407296 TTTTTAACAT
Statistics
Matches: 119, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
53 1 0.01
54 23 0.19
55 22 0.18
56 34 0.29
57 15 0.13
60 24 0.20
ACGTcount: A:0.32, C:0.11, G:0.05, T:0.52
Consensus pattern (55 bp):
ATTTTTTTTTTTAAGAAAAATTGATACTTCAACTTTTCCCTAAACCTTCTTTTTT
Found at i:16408993 original size:17 final size:17
Alignment explanation
Indices: 16408971--16409053 Score: 78
Period size: 17 Copynumber: 4.9 Consensus size: 17
16408961 GTAAGAACGT
*
16408971 AGATTCGTAAGAATTGA
1 AGATTCATAAGAATTGA
*
16408988 AGATTCACAAGAATT-A
1 AGATTCATAAGAATTGA
* *
16409004 GATATTCACAAGAATTGA
1 -AGATTCATAAGAATTGA
* *
16409022 AGATTCATAAAAATTGG
1 AGATTCATAAGAATTGA
* *
16409039 AGAATCACAAGAATT
1 AGATTCATAAGAATT
16409054 TCATATTCAT
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
16 1 0.02
17 52 0.96
18 1 0.02
ACGTcount: A:0.47, C:0.10, G:0.17, T:0.27
Consensus pattern (17 bp):
AGATTCATAAGAATTGA
Found at i:16409022 original size:34 final size:34
Alignment explanation
Indices: 16408979--16409053 Score: 105
Period size: 34 Copynumber: 2.2 Consensus size: 34
16408969 GTAGATTCGT
* * *
16408979 AAGAATTGAAGATTCACAAGAATTAGATATTCAC
1 AAGAATTGAAGATTCACAAAAATTAGAGAATCAC
* *
16409013 AAGAATTGAAGATTCATAAAAATTGGAGAATCAC
1 AAGAATTGAAGATTCACAAAAATTAGAGAATCAC
16409047 AAGAATT
1 AAGAATT
16409054 TCATATTCAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.49, C:0.09, G:0.16, T:0.25
Consensus pattern (34 bp):
AAGAATTGAAGATTCACAAAAATTAGAGAATCAC
Found at i:16409357 original size:17 final size:17
Alignment explanation
Indices: 16409335--16409398 Score: 69
Period size: 17 Copynumber: 3.8 Consensus size: 17
16409325 ATTTGCATTT
16409335 GATTCAAGATTCACAAA
1 GATTCAAGATTCACAAA
*
16409352 GATTCAATATTTGCA-AAA
1 GATTCAAGA-TT-CACAAA
*
16409370 G-TTTAAGATTCACAAA
1 GATTCAAGATTCACAAA
*
16409386 GATTTAAGATTCA
1 GATTCAAGATTCA
16409399 AAGATTTGCA
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
15 2 0.05
16 6 0.15
17 24 0.60
18 6 0.15
19 2 0.05
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.31
Consensus pattern (17 bp):
GATTCAAGATTCACAAA
Found at i:16409548 original size:23 final size:22
Alignment explanation
Indices: 16409494--16409549 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
16409484 AATTTAAAAA
* *
16409494 AAAAAATTTAAGGATTTACTTC
1 AAAAATTTTAAAGATTTACTTC
* * *
16409516 CAAGATTTTAAAGATTTGCATTC
1 AAAAATTTTAAAGATTTAC-TTC
16409539 AAAAATTTTAA
1 AAAAATTTTAA
16409550 TGTTTCACAT
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
22 14 0.54
23 12 0.46
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.38
Consensus pattern (22 bp):
AAAAATTTTAAAGATTTACTTC
Found at i:16409752 original size:23 final size:21
Alignment explanation
Indices: 16409686--16409787 Score: 68
Period size: 22 Copynumber: 4.7 Consensus size: 21
16409676 GTTCACATCC
**
16409686 AAAATTTTGAAGATTCTCATTCG
1 AAAATTTT-AAGATT-TCATTTA
*
16409709 AAAACTTTAGAGA-TTCA--TA
1 AAAATTTTA-AGATTTCATTTA
16409728 AAAATTTTCAAGATTCTCATTT-
1 AAAATTTT-AAGATT-TCATTTA
*
16409750 AAAACTTTAAGAATTTCATTTA
1 AAAATTTTAAG-ATTTCATTTA
16409772 AAAATTCTTATAGATT
1 AAAATT-TTA-AGATT
16409788 AATGCCCAGA
Statistics
Matches: 63, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
19 10 0.16
20 2 0.03
21 15 0.24
22 17 0.27
23 17 0.27
24 2 0.03
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40
Consensus pattern (21 bp):
AAAATTTTAAGATTTCATTTA
Found at i:16409761 original size:21 final size:21
Alignment explanation
Indices: 16409686--16409774 Score: 60
Period size: 21 Copynumber: 4.2 Consensus size: 21
16409676 GTTCACATCC
* * *
16409686 AAAATTTTGAAGATTCTCATTCG
1 AAAACTTTCAAGATT-TCATT-T
*
16409709 AAAACTTT-AGAGA-TTCA-TA
1 AAAACTTTCA-AGATTTCATTT
*
16409728 AAAATTTTCAAGATTCTCATTT
1 AAAACTTTCAAGATT-TCATTT
16409750 AAAACTTT-AAGAATTTCATTT
1 AAAACTTTCAAG-ATTTCATTT
16409771 AAAA
1 AAAA
16409775 ATTCTTATAG
Statistics
Matches: 55, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
19 10 0.18
20 3 0.05
21 19 0.35
22 13 0.24
23 10 0.18
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.38
Consensus pattern (21 bp):
AAAACTTTCAAGATTTCATTT
Found at i:16409768 original size:42 final size:43
Alignment explanation
Indices: 16409686--16409777 Score: 118
Period size: 42 Copynumber: 2.1 Consensus size: 43
16409676 GTTCACATCC
*
16409686 AAAATTTTGAAGATTCTCATTCGAAAACTTTAGAGATTCA-TA
1 AAAATTTTCAAGATTCTCATTCGAAAACTTTAGAGATTCATTA
*
16409728 AAAATTTTCAAGATTCTCATT-TAAAACTTTA-AGAATTTCATTTA
1 AAAATTTTCAAGATTCTCATTCGAAAACTTTAGAG-A-TTCA-TTA
16409772 AAAATT
1 AAAATT
16409778 CTTATAGATT
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
40 2 0.05
41 10 0.23
42 24 0.55
44 8 0.18
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (43 bp):
AAAATTTTCAAGATTCTCATTCGAAAACTTTAGAGATTCATTA
Found at i:16410949 original size:8 final size:8
Alignment explanation
Indices: 16410938--16410985 Score: 62
Period size: 8 Copynumber: 5.8 Consensus size: 8
16410928 ATTTCTTTTT
16410938 TTTTTTAA
1 TTTTTTAA
16410946 TTTTTTCACA
1 TTTTTT-A-A
16410956 -TTTTTAA
1 TTTTTTAA
16410963 TTTTTTTAA
1 -TTTTTTAA
16410972 TTTTTTAA
1 TTTTTTAA
16410980 TTTTTT
1 TTTTTT
16410986 TCACTTCATC
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
7 1 0.03
8 21 0.58
9 13 0.36
10 1 0.03
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.75
Consensus pattern (8 bp):
TTTTTTAA
Found at i:16410951 original size:9 final size:9
Alignment explanation
Indices: 16410937--16410986 Score: 61
Period size: 9 Copynumber: 5.8 Consensus size: 9
16410927 TATTTCTTTT
16410937 TTTTTTTAA
1 TTTTTTTAA
*
16410946 TTTTTTCACA
1 TTTTTTTA-A
16410956 --TTTTTAA
1 TTTTTTTAA
16410963 TTTTTTTAA
1 TTTTTTTAA
16410972 -TTTTTTAA
1 TTTTTTTAA
16410980 TTTTTTT
1 TTTTTTT
16410987 CACTTCATCC
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
7 1 0.03
8 13 0.37
9 20 0.57
10 1 0.03
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTTTTTAA
Found at i:16410986 original size:17 final size:18
Alignment explanation
Indices: 16410938--16410986 Score: 75
Period size: 17 Copynumber: 2.8 Consensus size: 18
16410928 ATTTCTTTTT
*
16410938 TTTTTTAATTTTTTCACA
1 TTTTTTAATTTTTTTACA
16410956 -TTTTTAATTTTTTTA-A
1 TTTTTTAATTTTTTTACA
16410972 TTTTTTAATTTTTTT
1 TTTTTTAATTTTTTT
16410987 CACTTCATCC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 1 0.03
17 28 0.97
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTTTAATTTTTTTACA
Found at i:16411907 original size:22 final size:23
Alignment explanation
Indices: 16411882--16411925 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
16411872 ATGAAATCTT
16411882 ATTAC-ATAAAACAAATCCTAAC
1 ATTACTATAAAACAAATCCTAAC
* *
16411904 ATTACTCTAAAAGAAATCCTAA
1 ATTACTATAAAACAAATCCTAA
16411926 AATGACAAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.52, C:0.20, G:0.02, T:0.25
Consensus pattern (23 bp):
ATTACTATAAAACAAATCCTAAC
Found at i:16414713 original size:12 final size:12
Alignment explanation
Indices: 16414696--16414720 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
16414686 TTTAACATTT
16414696 AAAAAAATTTTA
1 AAAAAAATTTTA
16414708 AAAAAAATTTTA
1 AAAAAAATTTTA
16414720 A
1 A
16414721 TACTTCAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAAAAATTTTA
Found at i:16414966 original size:59 final size:59
Alignment explanation
Indices: 16414835--16414966 Score: 160
Period size: 59 Copynumber: 2.2 Consensus size: 59
16414825 TTTTTTGAAA
* * *
16414835 TTAAAAAGATTTTTATTTAAGAAAAATTGATACTTTCATCTTTTCCTTAAAATGTCATTT
1 TTAAAAATATTTTTATTTAAGAAAAATTGATACTTTCAACTTTTCCTTAAAATAT-ATTT
** * * *
16414895 TT-ATTATTTTTTTATTTAAGAAAAGTTGATGCTTTCAACTTTTCCTTAAAA-ATATTTT
1 TTAAAAATATTTTTATTTAAGAAAAATTGATACTTTCAACTTTTCCTTAAAATATA-TTT
16414953 TTAAAAATATTTTT
1 TTAAAAATATTTTT
16414967 TGAAAAATTT
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
57 1 0.02
58 6 0.10
59 50 0.85
60 2 0.03
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (59 bp):
TTAAAAATATTTTTATTTAAGAAAAATTGATACTTTCAACTTTTCCTTAAAATATATTT
Found at i:16414977 original size:12 final size:13
Alignment explanation
Indices: 16414940--16414974 Score: 61
Period size: 13 Copynumber: 2.6 Consensus size: 13
16414930 CAACTTTTCC
16414940 TTAAAAATATTTT
1 TTAAAAATATTTT
16414953 TTAAAAATATTTT
1 TTAAAAATATTTT
16414966 TTGAAAAAT
1 TT-AAAAAT
16414975 TTTATTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 15 0.71
14 6 0.29
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (13 bp):
TTAAAAATATTTT
Found at i:16415119 original size:54 final size:53
Alignment explanation
Indices: 16414973--16415117 Score: 161
Period size: 54 Copynumber: 2.7 Consensus size: 53
16414963 TTTTTGAAAA
* *
16414973 ATTTTATTTTTTAAAGAAAATTGATAGTTTCGACTTTTCCTTAAACCTCTTTTTTT
1 ATTTT-TTTTTTAAA-AAAATTGATA-CTTCAACTTTTCCTTAAACCTCTTTTTTT
* *
16415029 ATTATTTTTTTT-AAAAAGTTGATACTTTTAACTTTTCCTTAAAACC-C-TTTTTT
1 ATT-TTTTTTTTAAAAAAATTGATAC-TTCAACTTTTCCTT-AAACCTCTTTTTTT
*
16415082 ATTTTTTTATTTAAAAAAAATGATACTTCAACTTTT
1 ATTTTTTT-TTTAAAAAAATTGATACTTCAACTTTT
16415118 TCTCAAAATA
Statistics
Matches: 77, Mismatches: 7, Indels: 13
0.79 0.07 0.13
Matches are distributed among these distances:
52 5 0.06
53 21 0.27
54 33 0.43
55 7 0.09
56 9 0.12
57 2 0.03
ACGTcount: A:0.30, C:0.12, G:0.05, T:0.53
Consensus pattern (53 bp):
ATTTTTTTTTTAAAAAAATTGATACTTCAACTTTTCCTTAAACCTCTTTTTTT
Found at i:16415133 original size:53 final size:53
Alignment explanation
Indices: 16414979--16415134 Score: 136
Period size: 53 Copynumber: 2.9 Consensus size: 53
16414969 AAAAATTTTA
* * * * *
16414979 TTTTTTAAAGAAAATTGATAGTTTCGACTTTTCCTTAAACCTCTTTTTTTATTATT
1 TTTTTTAAA-AAAA-TGATACTTTCAACTTTTCCTCAAAAC-ATTTTTTTATTATT
** * * **
16415035 TTTTTTAAAAAGTTGATACTTTTAACTTTTCCTTAAAACCCTTTTTTATT-TT
1 TTTTTTAAAAAAATGATACTTTCAACTTTTCCTCAAAACATTTTTTTATTATT
* *
16415087 TTTATTTAAAAAAAATGATAC-TTCAACTTTTTCTCAAAATATTTTTTT
1 TTT-TTT-AAAAAAATGATACTTTCAACTTTTCCTCAAAACATTTTTTT
16415135 TGAAAATTTT
Statistics
Matches: 83, Mismatches: 15, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
52 5 0.06
53 34 0.41
54 33 0.40
55 2 0.02
56 9 0.11
ACGTcount: A:0.30, C:0.12, G:0.04, T:0.53
Consensus pattern (53 bp):
TTTTTTAAAAAAATGATACTTTCAACTTTTCCTCAAAACATTTTTTTATTATT
Found at i:16430133 original size:37 final size:37
Alignment explanation
Indices: 16430091--16430203 Score: 146
Period size: 37 Copynumber: 3.2 Consensus size: 37
16430081 AAAATGGTAC
16430091 AAAAATTATTTATTTGATTGATGATCTTGATGGTATG
1 AAAAATTATTTATTTGATTGATGATCTTGATGGTATG
** *
16430128 -AAAA--A-TT-CCTGCTTGATGATCTTGATGGTATG
1 AAAAATTATTTATTTGATTGATGATCTTGATGGTATG
* *
16430160 AAAAATTTTTTATTTGATTGATGATCTTGATGGTATA
1 AAAAATTATTTATTTGATTGATGATCTTGATGGTATG
16430197 AAAAATT
1 AAAAATT
16430204 CCTACTTGAT
Statistics
Matches: 63, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
32 22 0.35
33 6 0.10
34 1 0.02
36 6 0.10
37 28 0.44
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.43
Consensus pattern (37 bp):
AAAAATTATTTATTTGATTGATGATCTTGATGGTATG
Found at i:16430149 original size:32 final size:32
Alignment explanation
Indices: 16430108--16430221 Score: 129
Period size: 32 Copynumber: 3.4 Consensus size: 32
16430098 ATTTATTTGA
16430108 TTGATGATCTTGATGGTATGAAAAATTCCTGC
1 TTGATGATCTTGATGGTATGAAAAATTCCTGC
** *
16430140 TTGATGATCTTGATGGTATGAAAAATTTTTTATTTGA
1 TTGATGATCTTGATGGTATGAAAAA----TT-CCTGC
* *
16430177 TTGATGATCTTGATGGTATAAAAAATTCCTAC
1 TTGATGATCTTGATGGTATGAAAAATTCCTGC
*
16430209 TTGATGATATTGA
1 TTGATGATCTTGA
16430222 CATTGTTCAT
Statistics
Matches: 68, Mismatches: 9, Indels: 10
0.78 0.10 0.11
Matches are distributed among these distances:
32 38 0.56
33 2 0.03
36 2 0.03
37 26 0.38
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (32 bp):
TTGATGATCTTGATGGTATGAAAAATTCCTGC
Found at i:16430172 original size:69 final size:69
Alignment explanation
Indices: 16430091--16430221 Score: 226
Period size: 69 Copynumber: 1.9 Consensus size: 69
16430081 AAAATGGTAC
* * *
16430091 AAAAATTATTTATTTGATTGATGATCTTGATGGTATGAAAAATTCCTGCTTGATGATCTTGATGG
1 AAAAATTATTTATTTGATTGATGATCTTGATGGTATAAAAAATTCCTACTTGATGATATTGATGG
16430156 TATG
66 TATG
*
16430160 AAAAATTTTTTATTTGATTGATGATCTTGATGGTATAAAAAATTCCTACTTGATGATATTGA
1 AAAAATTATTTATTTGATTGATGATCTTGATGGTATAAAAAATTCCTACTTGATGATATTGA
16430222 CATTGTTCAT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 58 1.00
ACGTcount: A:0.33, C:0.07, G:0.18, T:0.43
Consensus pattern (69 bp):
AAAAATTATTTATTTGATTGATGATCTTGATGGTATAAAAAATTCCTACTTGATGATATTGATGG
TATG
Found at i:16435202 original size:22 final size:21
Alignment explanation
Indices: 16435169--16435220 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
16435159 ATAATAAGTA
* *
16435169 AAATAAAAGAAATCTAAAAAT
1 AAATAAAAGAAAACGAAAAAT
16435190 AAATAAAATGAAAACGAAAAAT
1 AAATAAAA-GAAAACGAAAAAT
16435212 AAATGAAAA
1 AAAT-AAAA
16435221 AGGAAAACCT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 8 0.30
22 15 0.56
23 4 0.15
ACGTcount: A:0.73, C:0.04, G:0.08, T:0.15
Consensus pattern (21 bp):
AAATAAAAGAAAACGAAAAAT
Found at i:16435227 original size:17 final size:18
Alignment explanation
Indices: 16435190--16435227 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
16435180 ATCTAAAAAT
*
16435190 AAATAAAATGAAAACGAA
1 AAATAAAATGAAAAAGAA
16435208 AAAT-AAATGAAAAAGGAA
1 AAATAAAATGAAAAA-GAA
16435226 AA
1 AA
16435228 CCTATGAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.74, C:0.03, G:0.13, T:0.11
Consensus pattern (18 bp):
AAATAAAATGAAAAAGAA
Found at i:16448601 original size:865 final size:864
Alignment explanation
Indices: 16446729--16449061 Score: 3214
Period size: 865 Copynumber: 2.7 Consensus size: 864
16446719 AGGTTTTTAG
* * * * **
16446729 AATTCTAAAAATCATCAAATAATATCAAACTATGATCTAGAGCATTT-TGCAAAATTTCAACCTT
1 AATTCTAAAAATCATCAAATAATAACAAACCATCATCTAGAGCATTTCTG--ACATTTTGACCTT
* ** ** * * **
16446793 GAGAAAGTCAAAATT-TGAAAATACAATTAAGGGTATTTTTGTAATTTTACACCTTTAAATATGT
64 GCGTTAGTC-AAATTATGAAAATACTTTTAAGGGTATTTTTGTAATTTTATACCTTTCAAGGTGT
* * ** * * * *
16446857 TATCTGGCTTTTTAACACATTAAAAATCTTTTAAAAAAAATTCAATTATGATCTGAAAATTTTCA
128 GATATGGGATTTTAAGACATAAAAAATC-CTCAAAAAAAATTCAATTATGATCTGAAAATTTTCA
* * * *
16446922 CAAAAATTAAATTTCAAGAAGATAAATTATGAAGATACTCCTAAAGGGTAATTTTATAATTTTAC
192 CAAAAATTAAATTTCAAAAAGATAAACTATAAAGATACTCCTAAAAGGTAATTTTATAATTTTAC
*
16446987 CTTTCTCGAAGTGCAATCAAGGTTTTTAGTGCTTCAAAATTACTAATATCAATCTTAACCCACGT
257 CTTTCTCGAAGTGCAATCAAGGTTTTTAGTGCTTCAAAATTACTAATATCAATCTTAACCCACAT
*
16447052 TGGTTCCAAGTTGACTATCACAAATTCATCCAACCATCCAAAATTCACCCTTATTTTGTTTCAAA
322 TGGTTCCAAGTTGACTATCACAAATTCATCCAACCATCCAAAATTCACCCTTGTTTTGTTTCAAA
* *
16447117 GAGCAAACTTTCACTTTGGATCAATATTCCCAATGTGATCCAATGGTACAGATTGTTTACTACCA
387 GAGCAAACTTTCACTCTGGATCAAGATTCCCAATGTGATCCAATGGTACAGATTGTTTACTACCA
* *
16447182 TAGATGTGATTTTTAAAGCTCTTAGATTAACTAAAAAGACCATTTTGCCTTTGATATAAAAGTTT
452 TAGATGTGATTTTTAAAGCTCTTAGATTAACTAAAAAGACCATTTTACCCTTGATAT-AAAGTTT
* * *
16447247 TCGATCTTTAGGCCATTTTTTTGGATAGTCGATGCTCTCGTATCCATTTATGTGATTTCAAAGAT
516 TCGATCTTTAGGCCATTTTCTTGGATAGTCGATGCTCTCATATCCATTTATATGATTTCAAAGAT
*
16447312 CCAAAAATCATGAAATAATATGAAACTAAAATCTAAAAAGGTTCAAGAAAATAAGACCTCAGGAA
581 CCAAAAATCATGAAATAATACGAAACTAAAATCTAAAAAGGTTCAAGAAAATAAGACCTCAGGAA
*
16447377 GATTAAATTATAAAATTACCTTTAAGAGGTATTTTGGTAATTTCACACCTCTAGAAGTGCTATCA
646 GATTAAATTATAAAATTACCTTTAAGAGGTATTTTGGTAATTTCACACCTCCAGAAGTGCTATCA
*
16447442 TTATTTTTGAATGCTCCAAAAATCATTAAATATTTTAAAAGCATGTCTAGAAAGTTTCACAAAAA
711 TTATTTTTGAATGCTCCAAAAATCATCAAATATTTTAAAAGCATGTCTAGAAAGTTTCACAAAAA
* ** ** *
16447507 ATGGACCTTGGGGAGGTCAAATTATGAAATTATCCTTAAGGGATATTTTACTAATTTTACACATT
776 ATGGACCTTGGGAAGGTCAAATTACAAAATTATCCTTAAAAGAGATTTTACTAATTTTACACATT
16447572 TAAAGGTGCAGTCAAAGTTTTCAA
841 TAAAGGTGCAGTCAAAGTTTTCAA
* *
16447596 AATTCTAAAACTCATCAAATAATAACAAACCATCATCTAGAGCATTTCGTGACATTCTGACCTTG
1 AATTCTAAAAATCATCAAATAATAACAAACCATCATCTAGAGCATTTC-TGACATTTTGACCTTG
*
16447661 CGTTGGTCAAATTATGAAAATACTTTTAAGGGTATTTTTGTAATTTTATACCTTTCAAGGTGTGA
65 CGTTAGTCAAATTATGAAAATACTTTTAAGGGTATTTTTGTAATTTTATACCTTTCAAGGTGTGA
* *
16447726 TATGGGATTTTAAGATATAAAAAATCCTCAAAAAAAATTCATTTATGATCTGAAAATTTTCACAA
130 TATGGGATTTTAAGACATAAAAAATCCTCAAAAAAAATTCAATTATGATCTGAAAATTTTCACAA
* *
16447791 AAATTAAATGTCAAAAAGATAAACTATAAAGATACTCCTAAAAGGTAATTTTATAATTTTACATT
195 AAATTAAATTTCAAAAAGATAAACTATAAAGATACTCCTAAAAGGTAATTTTATAATTTTACCTT
16447856 TCTCGAAGTGCAATCAAGGTTTTTAGTGCTTCAAAATTACTAATATCAATCTTAACCCACATTGG
260 TCTCGAAGTGCAATCAAGGTTTTTAGTGCTTCAAAATTACTAATATCAATCTTAACCCACATTGG
16447921 TTCCAAGTTGACTATCACAAATTCATCCAACCATCCAAAATTCACCCTTGTTTTGTTTCAAAGAG
325 TTCCAAGTTGACTATCACAAATTCATCCAACCATCCAAAATTCACCCTTGTTTTGTTTCAAAGAG
*
16447986 CAAACTTTCACTCTGGATCAAGATTCCCAATGTGATCCAATGGTACAAATTGTTTACTACCATAG
390 CAAACTTTCACTCTGGATCAAGATTCCCAATGTGATCCAATGGTACAGATTGTTTACTACCATAG
* *
16448051 ATGTGATTTTTAAAGCTTTTAGATTAACTAAAAAGATCATTTTACCCTTGATATAAAGTTTTCGA
455 ATGTGATTTTTAAAGCTCTTAGATTAACTAAAAAGACCATTTTACCCTTGATATAAAGTTTTCGA
*
16448116 TCTTTAGGCCATTTTCTTGGATAGTCGATACTCTCATATCCATTTATATGATTTCAAAGATCCAA
520 TCTTTAGGCCATTTTCTTGGATAGTCGATGCTCTCATATCCATTTATATGATTTCAAAGATCCAA
* * * * *
16448181 AAATCATGAAATAATACGAAACTAAAATCT-GAAAGTTTCAAGAAAATACGACTTCGGGAAGATT
585 AAATCATGAAATAATACGAAACTAAAATCTAAAAAGGTTCAAGAAAATAAGACCTCAGGAAGATT
** * * * *
16448245 AAATTATAAAATTACCTTTAAGAGGTATTTTGGTAATTTCATGCCTCCCGAGGTGTTGTCATTA-
650 AAATTATAAAATTACCTTTAAGAGGTATTTTGGTAATTTCACACCTCCAGAAGTGCTATCATTAT
*
16448309 TTTTGAATGCTCTAAAAATCATCAAATATTTTTAAAAGCATGATCT-GAAAAGTTTCACAAAAAA
715 TTTTGAATGCTCCAAAAATCATCAAATA-TTTTAAAAGCATG-TCTAG-AAAGTTTCACAAAAAA
*
16448373 TGGACCTTGGGAAGGTCAAATTACAAAATTATCCTTAAAAGAGATTTTACTAATTTTACACCTTT
777 TGGACCTTGGGAAGGTCAAATTACAAAATTATCCTTAAAAGAGATTTTACTAATTTTACACATTT
* *
16448438 CAAGGTGTAGTCAAAGTTTTCAA
842 AAAGGTGCAGTCAAAGTTTTCAA
*
16448461 ATTTCTAAAAATCATCAAATAATAACAAACCATCATCTAGAGCATTTCATGACATTTTGACCTTG
1 AATTCTAAAAATCATCAAATAATAACAAACCATCATCTAGAGCATTTC-TGACATTTTGACCTTG
*
16448526 CGTTAGTCAAATTATGAAAATACTTTTAAGGGTATTTTTGTAATTTTATACCTTTCAGGGTGTGA
65 CGTTAGTCAAATTATGAAAATACTTTTAAGGGTATTTTTGTAATTTTATACCTTTCAAGGTGTGA
* * * * * **
16448591 TATGGGATTTTAAGACATCAAAAATCCTCAAAAAATATTTAATTGTGATATGAAAATTTTCATGA
130 TATGGGATTTTAAGACATAAAAAATCCTCAAAAAAAATTCAATTATGATCTGAAAATTTTCACAA
* * * * * * * * * * *
16448656 AAATTCAACTTTGAGAATGCT-AAGT-TAAAAAAAATCCCTAAAA-GTTATTTTGGTAATTTTAC
195 AAATT-AAATTTCAAAAAGATAAACTATAAAGATACT-CCTAAAAGGTAATTTT-ATAATTTTAC
* * * * * * ** *
16448718 CCTTCTCTAAATGCAATCAAGGTTTTTAGTGTTTTAAAATAAAAAATTTCAATCTTAATCCC-CA
257 CTTTCTCGAAGTGCAATCAAGGTTTTTAGTGCTTCAAAATTACTAATATCAATCTTAA-CCCACA
* * * * * * *
16448782 TGGGTTCAAAGTTGACTATCACAAACTCTTCCAAGCGTTCAAAATTCACCCTTGTTTCTGTTTCA
321 TTGGTTCCAAGTTGACTATCACAAATTCATCCAACCATCCAAAATTCACCCTTGTTT-TGTTTCA
* * * *** * *
16448847 AAAAGCAAACTTTCACCCTTGGATCAAGATTCCCAATGTAATCCAACAATCCAGATTGTTTACCA
385 AAGAGCAAACTTTCACTC-TGGATCAAGATTCCCAATGTGATCCAATGGTACAGATTGTTTACTA
* * * * * * * *
16448912 CCACAGATGTAATTTTTAAAAGCTCTT-GTATCAAGTGAAAAGACCATTTTACCCCTAATACAAA
449 CCATAGATGTGATTTTT-AAAGCTCTTAG-ATTAACTAAAAAGACCATTTTACCCTTGATATAAA
** * * * * * *
16448976 GTTTTTAATCTTTAGGCCATTTTCTT-GAAACGTTGATGCTCTCACATTCATTTTTATGATTTTA
512 GTTTTCGATCTTTAGGCCATTTTCTTGGATA-GTCGATGCTCTCATATCCATTTATATGATTTCA
*
16449040 AAGCA-CTAAAAATCATGAAATA
576 AAG-ATCCAAAAATCATGAAATA
16449062 CAATCAAATT
Statistics
Matches: 1306, Mismatches: 144, Indels: 31
0.88 0.10 0.02
Matches are distributed among these distances:
863 26 0.02
864 114 0.09
865 503 0.39
866 375 0.29
867 179 0.14
868 106 0.08
869 3 0.00
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (864 bp):
AATTCTAAAAATCATCAAATAATAACAAACCATCATCTAGAGCATTTCTGACATTTTGACCTTGC
GTTAGTCAAATTATGAAAATACTTTTAAGGGTATTTTTGTAATTTTATACCTTTCAAGGTGTGAT
ATGGGATTTTAAGACATAAAAAATCCTCAAAAAAAATTCAATTATGATCTGAAAATTTTCACAAA
AATTAAATTTCAAAAAGATAAACTATAAAGATACTCCTAAAAGGTAATTTTATAATTTTACCTTT
CTCGAAGTGCAATCAAGGTTTTTAGTGCTTCAAAATTACTAATATCAATCTTAACCCACATTGGT
TCCAAGTTGACTATCACAAATTCATCCAACCATCCAAAATTCACCCTTGTTTTGTTTCAAAGAGC
AAACTTTCACTCTGGATCAAGATTCCCAATGTGATCCAATGGTACAGATTGTTTACTACCATAGA
TGTGATTTTTAAAGCTCTTAGATTAACTAAAAAGACCATTTTACCCTTGATATAAAGTTTTCGAT
CTTTAGGCCATTTTCTTGGATAGTCGATGCTCTCATATCCATTTATATGATTTCAAAGATCCAAA
AATCATGAAATAATACGAAACTAAAATCTAAAAAGGTTCAAGAAAATAAGACCTCAGGAAGATTA
AATTATAAAATTACCTTTAAGAGGTATTTTGGTAATTTCACACCTCCAGAAGTGCTATCATTATT
TTTGAATGCTCCAAAAATCATCAAATATTTTAAAAGCATGTCTAGAAAGTTTCACAAAAAATGGA
CCTTGGGAAGGTCAAATTACAAAATTATCCTTAAAAGAGATTTTACTAATTTTACACATTTAAAG
GTGCAGTCAAAGTTTTCAA
Found at i:16461699 original size:17 final size:18
Alignment explanation
Indices: 16461679--16461712 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
16461669 GAAAAAAATT
16461679 AGAAAA-AAATAAAAAAG
1 AGAAAACAAATAAAAAAG
*
16461696 AGAAAACGAATAAAAAA
1 AGAAAACAAATAAAAAA
16461713 AAAGAGAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.79, C:0.03, G:0.12, T:0.06
Consensus pattern (18 bp):
AGAAAACAAATAAAAAAG
Found at i:16462401 original size:6 final size:6
Alignment explanation
Indices: 16462390--16462441 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
16462380 AACTAATAAA
* * *
16462390 AAAAAG AAAAAG AAAAAG AAAAGAAG AAGAAG AAGAAG AGAAAG AAACAAG
1 AAAAAG AAAAAG AAAAAG -AAA-AAG AAAAAG AAAAAG AAAAAG AAA-AAG
16462441 A
1 A
16462442 TAGAATATAC
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
6 27 0.69
7 9 0.23
8 3 0.08
ACGTcount: A:0.75, C:0.02, G:0.23, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:16462411 original size:20 final size:20
Alignment explanation
Indices: 16462388--16462428 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
16462378 AAAACTAATA
16462388 AAAAAAAGAAAAAGAAAAAG
1 AAAAAAAGAAAAAGAAAAAG
* * *
16462408 AAAAGAAGAAGAAGAAGAAG
1 AAAAAAAGAAAAAGAAAAAG
16462428 A
1 A
16462429 GAAAGAAACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (20 bp):
AAAAAAAGAAAAAGAAAAAG
Found at i:16462413 original size:17 final size:17
Alignment explanation
Indices: 16462387--16462432 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
16462377 AAAAACTAAT
16462387 AAAA-AAAAGAAAAAGA
1 AAAAGAAAAGAAAAAGA
*
16462403 AAAAGAAAAGAAGAAGA
1 AAAAGAAAAGAAAAAGA
* *
16462420 AGAAGAAGAGAAA
1 AAAAGAAAAGAAA
16462433 GAAACAAGAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
16 4 0.16
17 21 0.84
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (17 bp):
AAAAGAAAAGAAAAAGA
Found at i:16462446 original size:26 final size:26
Alignment explanation
Indices: 16462393--16462446 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
16462383 TAATAAAAAA
*
16462393 AAGAAAAAGAAAAAGAAAAGAAGAAG
1 AAGAAAAAGAAAAAGAAAACAAGAAG
* *
16462419 AAGAAGAAGAGAAAG-AAACAAGATAG
1 AAGAAAAAGAAAAAGAAAACAAGA-AG
16462445 AA
1 AA
16462447 TATACTGGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.72, C:0.02, G:0.24, T:0.02
Consensus pattern (26 bp):
AAGAAAAAGAAAAAGAAAACAAGAAG
Found at i:16462795 original size:35 final size:35
Alignment explanation
Indices: 16462733--16462953 Score: 180
Period size: 35 Copynumber: 6.3 Consensus size: 35
16462723 TCAGTCACAA
* * * *
16462733 CATCCTTATTTTTTGA-TTAGTGGTTTCATCTTAGT
1 CATCTTTATTTTTTGACTTA-CGATTTCATCTCAGT
* *
16462768 CATCTTTATTTTTTGACTTACGATTTCATTTCGGT
1 CATCTTTATTTTTTGACTTACGATTTCATCTCAGT
* * * *
16462803 TATCTTTATTTTTTAACTTACGAATTAATCTCAGT
1 CATCTTTATTTTTTGACTTACGATTTCATCTCAGT
* * * * * *
16462838 CATCTTTATTTTCTAACTTACGGTTTCGTCCCGGT
1 CATCTTTATTTTTTGACTTACGATTTCATCTCAGT
*** *
16462873 CATCTTTAATTTTTTTTTTGTA-G-TTTCATCCCAGT
1 CATCTTT-ATTTTTTGACT-TACGATTTCATCTCAGT
* *
16462908 CATCCTTATTTTTTGACTTACGATTTCATC-CCGAT
1 CATCTTTATTTTTTGACTTACGATTTCATCTCAG-T
16462943 CATCTTTATTT
1 CATCTTTATTT
16462954 CCTTACTTGC
Statistics
Matches: 148, Mismatches: 32, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
33 2 0.01
34 11 0.07
35 122 0.82
36 11 0.07
37 2 0.01
ACGTcount: A:0.19, C:0.19, G:0.10, T:0.52
Consensus pattern (35 bp):
CATCTTTATTTTTTGACTTACGATTTCATCTCAGT
Found at i:16462815 original size:70 final size:69
Alignment explanation
Indices: 16462733--16462953 Score: 228
Period size: 70 Copynumber: 3.2 Consensus size: 69
16462723 TCAGTCACAA
* * *
16462733 CATCCTTATTTTTTGATTAGTGGTTTCATCTTAGTCATCTTTATTTTTTGACTTACGATTTCATT
1 CATCTTTATTTTTT-ATTAGTGGTTTCATCTCAGTCATCTTTATTTTTTGACTTACGATTTCATC
*
16462798 TCGGT
65 CCGGT
* * ** * * * * *
16462803 TATCTTTATTTTTTAACTTA-CGAATTAATCTCAGTCATCTTTATTTTCTAACTTACGGTTTCGT
1 CATCTTTATTTTTT-A-TTAGTGGTTTCATCTCAGTCATCTTTATTTTTTGACTTACGATTTCAT
16462867 CCCGGT
64 CCCGGT
* * * * *
16462873 CATCTTTAATTTTTTTTTTGTAGTTTCATCCCAGTCATCCTTATTTTTTGACTTACGATTTCATC
1 CATCTTT-ATTTTTTATTAGTGGTTTCATCTCAGTCATCTTTATTTTTTGACTTACGATTTCATC
*
16462938 CCGAT
65 CCGGT
16462943 CATCTTTATTT
1 CATCTTTATTT
16462954 CCTTACTTGC
Statistics
Matches: 119, Mismatches: 29, Indels: 7
0.77 0.19 0.05
Matches are distributed among these distances:
69 6 0.05
70 103 0.87
71 10 0.08
ACGTcount: A:0.19, C:0.19, G:0.10, T:0.52
Consensus pattern (69 bp):
CATCTTTATTTTTTATTAGTGGTTTCATCTCAGTCATCTTTATTTTTTGACTTACGATTTCATCC
CGGT
Found at i:16463420 original size:21 final size:23
Alignment explanation
Indices: 16463395--16463456 Score: 76
Period size: 22 Copynumber: 2.7 Consensus size: 23
16463385 TTTTTCAACT
*
16463395 CAACAAAAAAAAAAA-GC-ATAA
1 CAACAAAAAAAAAAACACAATAA
16463416 CAACACAAAAAAAAAACACAATAA
1 CAACA-AAAAAAAAAACACAATAA
16463440 -AACAAAAAACAAAAACA
1 CAACAAAAAA-AAAAACA
16463457 AAAATAAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
21 5 0.14
22 15 0.42
23 12 0.33
24 4 0.11
ACGTcount: A:0.77, C:0.18, G:0.02, T:0.03
Consensus pattern (23 bp):
CAACAAAAAAAAAAACACAATAA
Found at i:16463435 original size:13 final size:13
Alignment explanation
Indices: 16463417--16463460 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
16463407 AAAGCATAAC
16463417 AACACAAAAAAAA
1 AACACAAAAAAAA
16463430 AACACAATAAAACAA
1 AACACAA-AAAA-AA
*
16463445 AAAACAAAAACAAA
1 AACACAAAAA-AAA
16463459 AA
1 AA
16463461 TAAAAACATA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
13 7 0.26
14 11 0.41
15 9 0.33
ACGTcount: A:0.82, C:0.16, G:0.00, T:0.02
Consensus pattern (13 bp):
AACACAAAAAAAA
Found at i:16463436 original size:18 final size:18
Alignment explanation
Indices: 16463415--16463473 Score: 59
Period size: 17 Copynumber: 3.3 Consensus size: 18
16463405 AAAAAGCATA
16463415 ACAACACAAAAAAAAAAC
1 ACAACACAAAAAAAAAAC
* *
16463433 ACAATA-AAACAAAAAAC
1 ACAACACAAAAAAAAAAC
*
16463450 A-AAAACAAAAATAAAAAC
1 ACAACACAAAAA-AAAAAC
*
16463468 ATAACA
1 ACAACA
16463474 ACCAAACAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
16 3 0.09
17 15 0.45
18 12 0.36
19 3 0.09
ACGTcount: A:0.78, C:0.17, G:0.00, T:0.05
Consensus pattern (18 bp):
ACAACACAAAAAAAAAAC
Found at i:16463443 original size:23 final size:23
Alignment explanation
Indices: 16463397--16463465 Score: 72
Period size: 23 Copynumber: 3.0 Consensus size: 23
16463387 TTTCAACTCA
16463397 ACAAAAAAAAAA-AGC-ATAACAAC
1 ACAAAAAAAAAACA-CAATAA-AAC
16463420 ACAAAAAAAAAACACAATAAAAC
1 ACAAAAAAAAAACACAATAAAAC
*
16463443 A-AAAAACAAAAACAAAAATAAAA
1 ACAAAAA-AAAAAC-ACAATAAAA
16463466 ACATAACAAC
Statistics
Matches: 41, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
22 5 0.12
23 23 0.56
24 13 0.32
ACGTcount: A:0.80, C:0.14, G:0.01, T:0.04
Consensus pattern (23 bp):
ACAAAAAAAAAACACAATAAAAC
Found at i:16463457 original size:21 final size:21
Alignment explanation
Indices: 16463395--16463457 Score: 67
Period size: 21 Copynumber: 2.9 Consensus size: 21
16463385 TTTTTCAACT
16463395 CAACAAAAAAAAAAAGC-ATAA
1 CAACAAAAAAAAAAA-CAATAA
16463416 CAACACAAAAAAAAAACACAATAA
1 C-A-ACAAAAAAAAAA-ACAATAA
16463440 -AACAAAAAACAAAAACAA
1 CAACAAAAAA-AAAAACAA
16463458 AAATAAAAAC
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
21 13 0.35
22 6 0.16
23 13 0.35
24 5 0.14
ACGTcount: A:0.78, C:0.17, G:0.02, T:0.03
Consensus pattern (21 bp):
CAACAAAAAAAAAAACAATAA
Found at i:16463466 original size:13 final size:13
Alignment explanation
Indices: 16463396--16463486 Score: 55
Period size: 12 Copynumber: 6.7 Consensus size: 13
16463386 TTTTCAACTC
16463396 AACAAAAAA-AAA
1 AACAAAAAACAAA
16463408 AAGCATAACAACACAAA
1 AA-CA-AA-AA-ACAAA
16463425 AA-AAAAACACAATAA
1 AACAAAAA-AC-A-AA
16463440 AACAAAAAACAAA
1 AACAAAAAACAAA
*
16463453 AAC-AAAAATAAA
1 AACAAAAAACAAA
* *
16463465 AACATAACAAC-CA
1 AACA-AAAAACAAA
16463478 AACAAAAAA
1 AACAAAAAA
16463487 GAATCACCTT
Statistics
Matches: 64, Mismatches: 5, Indels: 20
0.72 0.06 0.22
Matches are distributed among these distances:
12 17 0.27
13 17 0.27
14 10 0.16
15 9 0.14
16 6 0.09
17 5 0.08
ACGTcount: A:0.78, C:0.16, G:0.01, T:0.04
Consensus pattern (13 bp):
AACAAAAAACAAA
Found at i:16463486 original size:21 final size:20
Alignment explanation
Indices: 16463398--16463486 Score: 64
Period size: 18 Copynumber: 4.5 Consensus size: 20
16463388 TTCAACTCAA
16463398 CAAAAAAAAAAAGCATAACAA-
1 CAAAAAAAAAAA-CA-AACAAC
16463419 CACAAAAAAAAAAC--ACAA-
1 CA-AAAAAAAAAACAAACAAC
* *
16463437 TAAAACAAAAAACAAA-AA-
1 CAAAAAAAAAAACAAACAAC
*
16463455 CAAAAATAAAAACATAACAAC
1 CAAAAAAAAAAACA-AACAAC
16463476 CAAACAAAAAA
1 CAAA-AAAAAA
16463487 GAATCACCTT
Statistics
Matches: 55, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
17 10 0.18
18 18 0.33
19 3 0.05
20 2 0.04
21 7 0.13
22 15 0.27
ACGTcount: A:0.78, C:0.17, G:0.01, T:0.04
Consensus pattern (20 bp):
CAAAAAAAAAAACAAACAAC
Found at i:16464950 original size:56 final size:55
Alignment explanation
Indices: 16464802--16464964 Score: 156
Period size: 55 Copynumber: 3.0 Consensus size: 55
16464792 GACTTATAAT
* * * * *
16464802 TTTTCTTACCTATATCGATGCTTAAAG-CTCATTAGTATAAACTCATATGTTTTTA
1 TTTTCTTACCTATATCGACGATT-AAGTCTCATTAGTATAAACTTATATATTTTAA
* *
16464857 TTTTCTTACTTATA-CTGACGATT-AGTGCTCATTAGTATAGACTTATATATTTTAA
1 TTTTCTTACCTATATC-GACGATTAAGT-CTCATTAGTATAAACTTATATATTTTAA
* * *
16464912 GTTTTCTTACCTATATCGACGGTTAACGTCTC-TCAGTATAAACTTGTA-ATTTT
1 -TTTTCTTACCTATATCGACGATTAA-GTCTCATTAGTATAAACTTATATATTTT
16464965 TCTTACCTAT
Statistics
Matches: 89, Mismatches: 12, Indels: 14
0.77 0.10 0.12
Matches are distributed among these distances:
53 2 0.02
54 1 0.01
55 47 0.53
56 32 0.36
57 5 0.06
58 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.11, T:0.45
Consensus pattern (55 bp):
TTTTCTTACCTATATCGACGATTAAGTCTCATTAGTATAAACTTATATATTTTAA
Found at i:16464987 original size:49 final size:48
Alignment explanation
Indices: 16464913--16465013 Score: 125
Period size: 49 Copynumber: 2.1 Consensus size: 48
16464903 ATATTTTAAG
* *
16464913 TTTTCTTACCTATATCGACGGTTAACGTCTC-TCAGTATAAACTTGTAAT
1 TTTTCTTACCTATATCGACGCTTAACATC-CATCAGTATAAACTTGT-AT
* *
16464962 TTTTCTTACCTATA-CAGACGCTTAACATCCATCGGTATAGACTTGTAT
1 TTTTCTTACCTATATC-GACGCTTAACATCCATCAGTATAAACTTGTAT
16465010 TTTT
1 TTTT
16465014 AATTTCTTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
48 8 0.17
49 38 0.83
ACGTcount: A:0.26, C:0.21, G:0.12, T:0.42
Consensus pattern (48 bp):
TTTTCTTACCTATATCGACGCTTAACATCCATCAGTATAAACTTGTAT
Found at i:16465377 original size:15 final size:15
Alignment explanation
Indices: 16465357--16465386 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
16465347 TACCAAGTCT
16465357 GATAAAACAAACATC
1 GATAAAACAAACATC
16465372 GATAAAACAAACATC
1 GATAAAACAAACATC
16465387 ACTGAATGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.20, G:0.07, T:0.13
Consensus pattern (15 bp):
GATAAAACAAACATC
Found at i:16473972 original size:21 final size:21
Alignment explanation
Indices: 16473928--16473966 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 21
16473918 AATCAATAAT
16473928 AAATATAAAAAACAAATGTAG
1 AAATATAAAAAACAAATGTAG
16473949 AAAT-TAAAAAA-AAATGTA
1 AAATATAAAAAACAAATGTA
16473967 AGGAAAAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.39
20 7 0.39
21 4 0.22
ACGTcount: A:0.69, C:0.03, G:0.08, T:0.21
Consensus pattern (21 bp):
AAATATAAAAAACAAATGTAG
Found at i:16476105 original size:16 final size:16
Alignment explanation
Indices: 16476086--16476127 Score: 66
Period size: 17 Copynumber: 2.6 Consensus size: 16
16476076 ATTTTATTTA
*
16476086 TTAATAATTATAGTTT
1 TTAAAAATTATAGTTT
16476102 TTAAAAAATTATAGTTT
1 TT-AAAAATTATAGTTT
16476119 TTAAAAATT
1 TTAAAAATT
16476128 TTTATTAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 9 0.38
17 15 0.62
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (16 bp):
TTAAAAATTATAGTTT
Found at i:16476113 original size:17 final size:17
Alignment explanation
Indices: 16476091--16476125 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
16476081 ATTTATTAAT
16476091 AATTATAGTTTTTAAAA
1 AATTATAGTTTTTAAAA
16476108 AATTATAGTTTTTAAAA
1 AATTATAGTTTTTAAAA
16476125 A
1 A
16476126 TTTTTATTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.46
Consensus pattern (17 bp):
AATTATAGTTTTTAAAA
Found at i:16477720 original size:17 final size:17
Alignment explanation
Indices: 16477686--16477723 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
16477676 TTAAAATAAT
**
16477686 AATAATAATAATCTAAA
1 AATAATAATAATAAAAA
16477703 AATAATAATAATAAAAA
1 AATAATAATAATAAAAA
16477720 AATA
1 AATA
16477724 TTTTTATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (17 bp):
AATAATAATAATAAAAA
Found at i:16477852 original size:21 final size:20
Alignment explanation
Indices: 16477827--16477879 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 20
16477817 AAAACTCTTT
16477827 AAACCCTAAAAC-CAAATCCTA
1 AAACCCTAAAACTCAAA-CC-A
*
16477848 AAACCCTTGAAACTCAAACCA
1 AAACCC-TAAAACTCAAACCA
*
16477869 AAACCCCAAAA
1 AAACCCTAAAA
16477880 ATCCAAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
20 3 0.11
21 13 0.48
22 7 0.26
23 4 0.15
ACGTcount: A:0.53, C:0.34, G:0.02, T:0.11
Consensus pattern (20 bp):
AAACCCTAAAACTCAAACCA
Found at i:16479696 original size:12 final size:14
Alignment explanation
Indices: 16479678--16479712 Score: 56
Period size: 12 Copynumber: 2.6 Consensus size: 14
16479668 CCAACAAGCA
16479678 ACAAAAAAAAA-AG
1 ACAAAAAAAAAGAG
16479691 -CAAAAAAAAAGAG
1 ACAAAAAAAAAGAG
16479704 ACAAAAAAA
1 ACAAAAAAA
16479713 GGTTTAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 10 0.50
13 2 0.10
14 8 0.40
ACGTcount: A:0.83, C:0.09, G:0.09, T:0.00
Consensus pattern (14 bp):
ACAAAAAAAAAGAG
Found at i:16479698 original size:13 final size:14
Alignment explanation
Indices: 16479680--16479712 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
16479670 AACAAGCAAC
16479680 AAAAAAAAAAG-CA
1 AAAAAAAAAAGACA
*
16479693 AAAAAAAAGAGACA
1 AAAAAAAAAAGACA
16479707 AAAAAA
1 AAAAAA
16479713 GGTTTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.85, C:0.06, G:0.09, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAGACA
Found at i:16486620 original size:22 final size:22
Alignment explanation
Indices: 16486595--16486681 Score: 88
Period size: 22 Copynumber: 4.0 Consensus size: 22
16486585 TCGATTCTAC
*
16486595 AAGACCTTCGAGCATGATTTTT
1 AAGACCTTCGAGCATAATTTTT
* *
16486617 AAGACC-TCTGGGCATAATCTTT
1 AAGACCTTC-GAGCATAATTTTT
*
16486639 AAGATCTTC-AGGCATAATTTTT
1 AAGACCTTCGA-GCATAATTTTT
* *
16486661 AAGACATCCGAGCATAATTTT
1 AAGACCTTCGAGCATAATTTT
16486682 GATTCGCGGT
Statistics
Matches: 52, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
21 2 0.04
22 47 0.90
23 3 0.06
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.34
Consensus pattern (22 bp):
AAGACCTTCGAGCATAATTTTT
Found at i:16486821 original size:22 final size:21
Alignment explanation
Indices: 16486748--16486821 Score: 69
Period size: 22 Copynumber: 3.4 Consensus size: 21
16486738 ATCGATTCTG
* *
16486748 TAAGACCTTTGGACATGATTTT
1 TAAGACCTCTGAACATGA-TTT
* *
16486770 TAAGA-CTCCGAGCATGATTT
1 TAAGACCTCTGAACATGATTT
*
16486790 CTAAGACCTCTGAACATAATCTT
1 -TAAGACCTCTGAACATGAT-TT
16486813 TAAGACCTC
1 TAAGACCTC
16486822 CAGGCAGAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
20 3 0.07
21 13 0.31
22 24 0.57
23 2 0.05
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (21 bp):
TAAGACCTCTGAACATGATTT
Found at i:16486871 original size:153 final size:154
Alignment explanation
Indices: 16486539--16486928 Score: 477
Period size: 153 Copynumber: 2.5 Consensus size: 154
16486529 AATCACGGTG
* * * * * **
16486539 TTGTCCCAATCGATTTCTTATTTTTTAACTTACGGTGTTGTCTCAATCGATTCTACAAGACC-TT
1 TTGTCCCAATCGATTCCTTATTTTTTGACTTGCAGTGTTGTCACAATCGATTCTGTAAGACCTTT
* * * * *
16486603 CGAGCATGATTTTTAAGACCTCTGGGCATAATCTTTAAGATCTTCAGGCATAATTTTTAAGACAT
66 CGAGCATGATTTTTAAGA-CTCCGAGCATAATCTTTAAGACCTTCAGACATAATCTTTAAGACAT
* * *
16486668 CCGAGCATAATTTTGATTCGCGGTA
130 CCGAGCAGAATTTCGATTCGCGATA
* * *
16486693 TTGTCCCAATCAATTCTTTAATTTTTGACTTGCAGTGTTGTCACAATCGATTCTGTAAGACCTTT
1 TTGTCCCAATCGATTCCTTATTTTTTGACTTGCAGTGTTGTCACAATCGATTCTGTAAGACCTTT
* * * *
16486758 GGA-CATGATTTTTAAGACTCCGAGCATGAT-TTCTAAGACC-TCTGAACATAATCTTTAAGACC
66 CGAGCATGATTTTTAAGACTCCGAGCATAATCTT-TAAGACCTTCAG-ACATAATCTTTAAGACA
16486820 TCC-AGGCAGAATTTCGATTCGCGATA
129 TCCGA-GCAGAATTTCGATTCGCGATA
* *
16486846 TTGTCCCAATCGATTCCTTATTTTTTGACTTGCAGTGTTGTCCCAATCGATTTTGTAAGA-CTTT
1 TTGTCCCAATCGATTCCTTATTTTTTGACTTGCAGTGTTGTCACAATCGATTCTGTAAGACCTTT
*
16486910 CGAGCATGACTTTTAAGAC
66 CGAGCATGATTTTTAAGAC
16486929 CTCTGGGCAT
Statistics
Matches: 202, Mismatches: 29, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
152 12 0.06
153 120 0.59
154 66 0.33
155 4 0.02
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (154 bp):
TTGTCCCAATCGATTCCTTATTTTTTGACTTGCAGTGTTGTCACAATCGATTCTGTAAGACCTTT
CGAGCATGATTTTTAAGACTCCGAGCATAATCTTTAAGACCTTCAGACATAATCTTTAAGACATC
CGAGCAGAATTTCGATTCGCGATA
Found at i:16486949 original size:110 final size:110
Alignment explanation
Indices: 16486811--16487037 Score: 312
Period size: 110 Copynumber: 2.1 Consensus size: 110
16486801 GAACATAATC
* *
16486811 TTTAAGACCTCCAGGCAGAATTTCGATTCGC-GATATTGTCCCAATCGATTCCTTATTTTTTGAC
1 TTTAAGACCTCCAGGCAGAATTTCGATTCGCAG-TATTGTCCCAATCAATTCCTTATTTTTTAAC
* *
16486875 TTGCAGTGTTGTCCCAATCGATTTTGTAAGACTTTCGAGCATGACT
65 TTGCAATGTTGTCCCAATCGATTTTGTAAGACCTTCGAGCATGACT
** * * * *
16486921 TTTAAGACCTCTGGGCATAATTTTGATTCGCAGTATTGTTCCGATCAATTCCTTATTTTTTAACT
1 TTTAAGACCTCCAGGCAGAATTTCGATTCGCAGTATTGTCCCAATCAATTCCTTATTTTTTAACT
* * * *
16486986 TGCAATGTTGTCTCAGTCGATTTTGTAAGACCTTCGGGCATGATT
66 TGCAATGTTGTCCCAATCGATTTTGTAAGACCTTCGAGCATGACT
16487031 TTTAAGA
1 TTTAAGA
16487038 TCTTCGAGCA
Statistics
Matches: 102, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
110 101 0.99
111 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (110 bp):
TTTAAGACCTCCAGGCAGAATTTCGATTCGCAGTATTGTCCCAATCAATTCCTTATTTTTTAACT
TGCAATGTTGTCCCAATCGATTTTGTAAGACCTTCGAGCATGACT
Found at i:16487042 original size:22 final size:22
Alignment explanation
Indices: 16487004--16487062 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
16486994 TGTCTCAGTC
*
16487004 GATTTTGTAAGACCTTCGGGCAT
1 GATTTT-TAAGACCTTCGAGCAT
*
16487027 GATTTTTAAGATCTTCGAGCAT
1 GATTTTTAAGACCTTCGAGCAT
* *
16487049 AATCTTTAAGACCT
1 GATTTTTAAGACCT
16487063 CTGGACATAA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
22 25 0.81
23 6 0.19
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (22 bp):
GATTTTTAAGACCTTCGAGCAT
Found at i:16487047 original size:132 final size:132
Alignment explanation
Indices: 16486894--16487205 Score: 382
Period size: 132 Copynumber: 2.4 Consensus size: 132
16486884 TGTCCCAATC
* * * *
16486894 GATTTTGTAAGACTTTCGAGCATGA-CTTTTAAGACCTCTGGGCATAATTTTGATTCGCAGTA-T
1 GATTTT-TAAGACTTTCGAGCATAATC-TTTAAGACCTCTGGACATAATTTTGATTCAC-GGAGT
* * * * *
16486957 TGTTCCGATCAATTCCTTATTTTTTAACTTGCAATGTTGTCTCAGTCGATTTTGTAAGACCTTCG
63 TGTCCCAATCAATTCCTTATTTTTTAACTTGCAATGTTGTCTCAATCGATTTTGTAAGACCTCCA
*
16487022 GGCAT
128 AGCAT
16487027 GATTTTTAAGA-TCTTCGAGCATAATCTTTAAGACCTCTGGACATAATTTTGATTCACGGAGTTG
1 GATTTTTAAGACT-TTCGAGCATAATCTTTAAGACCTCTGGACATAATTTTGATTCACGGAGTTG
* * *
16487091 TCCCAATCGATTCTTTATTTTTTAACTTGCAATGTTGTTTCAATCGATTTTGTAAGACCTCCAAG
65 TCCCAATCAATTCCTTATTTTTTAACTTGCAATGTTGTCTCAATCGATTTTGTAAGACCTCCAAG
16487156 CAT
130 CAT
* * * *
16487159 GATTTCTAAGTC-CTCCAGGCATAATCTTTAAGACCT-TCGGACATAAT
1 GATTTTTAAGACTTTCGA-GCATAATCTTTAAGACCTCT-GGACATAAT
16487206 CTTTAAGACC
Statistics
Matches: 156, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
131 7 0.04
132 142 0.91
133 7 0.04
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (132 bp):
GATTTTTAAGACTTTCGAGCATAATCTTTAAGACCTCTGGACATAATTTTGATTCACGGAGTTGT
CCCAATCAATTCCTTATTTTTTAACTTGCAATGTTGTCTCAATCGATTTTGTAAGACCTCCAAGC
AT
Found at i:16487190 original size:22 final size:22
Alignment explanation
Indices: 16487143--16487227 Score: 84
Period size: 22 Copynumber: 3.9 Consensus size: 22
16487133 ATCGATTTTG
* *
16487143 TAAGACCTCCAAGCATGAT-TT
1 TAAGACCTCCAGGCATAATCTT
*
16487164 CTAAGTCCTCCAGGCATAATCTT
1 -TAAGACCTCCAGGCATAATCTT
*
16487187 TAAGACCTTC-GGACATAATCTT
1 TAAGACCTCCAGG-CATAATCTT
**
16487209 TAAGACCTCTGGGCATAAT
1 TAAGACCTCCAGGCATAAT
16487228 TTTGATTCCC
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.04
22 47 0.89
23 4 0.08
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (22 bp):
TAAGACCTCCAGGCATAATCTT
Found at i:16487300 original size:37 final size:37
Alignment explanation
Indices: 16487237--16487345 Score: 103
Period size: 37 Copynumber: 2.9 Consensus size: 37
16487227 TTTTGATTCC
* * * * * *
16487237 CGGTGTTGTCCTGATCGATTCCTTATTTTTTGATTTA
1 CGGTGTTATCCTGGTCAATTCTTTATTTCTTGACTTA
* * * *
16487274 TGGTGTTGT-CTCGGTCCATTCTTTATTCCTTGACTTA
1 CGGTGTTATCCT-GGTCAATTCTTTATTTCTTGACTTA
*
16487311 CGGTGTTATCCTGGTCAATTCTTTATTTCTCGACT
1 CGGTGTTATCCTGGTCAATTCTTTATTTCTTGACT
16487346 CGCGACACGT
Statistics
Matches: 58, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
36 2 0.03
37 54 0.93
38 2 0.03
ACGTcount: A:0.13, C:0.20, G:0.18, T:0.49
Consensus pattern (37 bp):
CGGTGTTATCCTGGTCAATTCTTTATTTCTTGACTTA
Found at i:16487766 original size:23 final size:22
Alignment explanation
Indices: 16487722--16487777 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
16487712 CAATCCTATT
*
16487722 AGACCAATCACCCAGTCTCATC
1 AGACCAACCACCCAGTCTCATC
16487744 AGACCAACCATCCCAGT-TCCATC
1 AGACCAACCA-CCCAGTCT-CATC
*
16487767 AAACCAACCAC
1 AGACCAACCAC
16487778 GCTTGTGACC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 11 0.37
23 19 0.63
ACGTcount: A:0.36, C:0.43, G:0.07, T:0.14
Consensus pattern (22 bp):
AGACCAACCACCCAGTCTCATC
Found at i:16488937 original size:20 final size:20
Alignment explanation
Indices: 16488880--16488948 Score: 86
Period size: 20 Copynumber: 3.5 Consensus size: 20
16488870 AATAAAGTCC
*
16488880 AATAATAA-CTAAAAAAAAT
1 AATAATAATCTAAAAATAAT
* * *
16488899 ACTAAAAATGCTTAAAATAAT
1 AATAATAAT-CTAAAAATAAT
16488920 AATAATAATCTAAAAATAAT
1 AATAATAATCTAAAAATAAT
16488940 AATAATAAT
1 AATAATAAT
16488949 AGAATATTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
19 6 0.15
20 19 0.46
21 16 0.39
ACGTcount: A:0.65, C:0.06, G:0.01, T:0.28
Consensus pattern (20 bp):
AATAATAATCTAAAAATAAT
Found at i:16489083 original size:21 final size:21
Alignment explanation
Indices: 16489058--16489132 Score: 57
Period size: 21 Copynumber: 3.4 Consensus size: 21
16489048 AAAACTTTCT
16489058 AAACCCTAAAACCAAATCCTA
1 AAACCCTAAAACCAAATCCTA
*
16489079 AAACCCTTGAAACTCAAA-CC-A
1 AAACCC-TAAAAC-CAAATCCTA
*
16489100 AAACCCCAAAAATCCAAAAAT-CTA
1 AAA-CCCTAAAA-CC--AAATCCTA
16489124 AAACCCTAA
1 AAACCCTAA
16489133 CCTTTAAAAC
Statistics
Matches: 42, Mismatches: 4, Indels: 14
0.70 0.07 0.23
Matches are distributed among these distances:
21 14 0.33
22 11 0.26
23 13 0.31
24 4 0.10
ACGTcount: A:0.53, C:0.32, G:0.01, T:0.13
Consensus pattern (21 bp):
AAACCCTAAAACCAAATCCTA
Found at i:16491616 original size:18 final size:18
Alignment explanation
Indices: 16491593--16491627 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
16491583 ACTAAGACTG
16491593 CAAAAG-CAAAAGTAAAAA
1 CAAAAGCCAAAAG-AAAAA
16491611 CAAAAGCCAAAAGAAAA
1 CAAAAGCCAAAAGAAAA
16491628 GATAACTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.71, C:0.14, G:0.11, T:0.03
Consensus pattern (18 bp):
CAAAAGCCAAAAGAAAAA
Found at i:16492151 original size:8 final size:8
Alignment explanation
Indices: 16492138--16492162 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
16492128 TTTATTAAAA
16492138 TATAATTT
1 TATAATTT
16492146 TATAATTT
1 TATAATTT
16492154 TATAATTT
1 TATAATTT
16492162 T
1 T
16492163 TAAAATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
TATAATTT
Found at i:16492169 original size:17 final size:16
Alignment explanation
Indices: 16492138--16492171 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
16492128 TTTATTAAAA
*
16492138 TATAATTTTATAATTT
1 TATAATTTTAAAATTT
16492154 TATAATTTTTAAAATTT
1 TATAA-TTTTAAAATTT
16492171 T
1 T
16492172 TTAAGATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TATAATTTTAAAATTT
Found at i:16492992 original size:29 final size:27
Alignment explanation
Indices: 16492936--16492993 Score: 64
Period size: 29 Copynumber: 2.1 Consensus size: 27
16492926 AAATTAAATG
* *
16492936 TTATATTTTATTTTGTATTTTATCAAT
1 TTATATTTTATTTTGAATTTAATCAAT
16492963 TTATATTTTTATATTTGAAATTTAAT-AAT
1 TTATA-TTTTAT-TTTG-AATTTAATCAAT
16492992 TT
1 TT
16492994 TTTTGTTGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
27 5 0.19
28 6 0.23
29 9 0.35
30 6 0.23
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (27 bp):
TTATATTTTATTTTGAATTTAATCAAT
Found at i:16496625 original size:18 final size:18
Alignment explanation
Indices: 16496590--16496654 Score: 60
Period size: 18 Copynumber: 3.6 Consensus size: 18
16496580 TTATCCACCA
*
16496590 CAAACGTATCCTGC-ACCT
1 CAAATGTATCCT-CTACCT
*
16496608 TAAATGTATCCTCTACCT
1 CAAATGTATCCTCTACCT
* * * *
16496626 CAAATATATCATTTACCA
1 CAAATGTATCCTCTACCT
16496644 CAAATGTATCC
1 CAAATGTATCC
16496655 CCCACTACAA
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
17 1 0.03
18 36 0.97
ACGTcount: A:0.34, C:0.29, G:0.06, T:0.31
Consensus pattern (18 bp):
CAAATGTATCCTCTACCT
Found at i:16497912 original size:3 final size:3
Alignment explanation
Indices: 16497904--16497949 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
16497894 CTCTTAGAAT
16497904 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
16497950 GCTTTTAATA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:16497972 original size:15 final size:16
Alignment explanation
Indices: 16497952--16497988 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
16497942 AATAATAAGC
16497952 TTTTAAT-AAGAAAAA
1 TTTTAATAAAGAAAAA
16497967 TTTTAATAAAGAAAAA
1 TTTTAATAAAGAAAAA
16497983 TTTTAA
1 TTTTAA
16497989 AATCCCTACT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 7 0.33
16 14 0.67
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (16 bp):
TTTTAATAAAGAAAAA
Found at i:16498329 original size:13 final size:12
Alignment explanation
Indices: 16498302--16498356 Score: 56
Period size: 12 Copynumber: 4.4 Consensus size: 12
16498292 CATAAATTTT
16498302 TGAAACCCTAAA
1 TGAAACCCTAAA
16498314 TGAAACCCTAAAA
1 TGAAACCCT-AAA
*
16498327 TGAAAATCCTAAA
1 TG-AAACCCTAAA
* * *
16498340 TGACATCTTAAA
1 TGAAACCCTAAA
16498352 TGAAA
1 TGAAA
16498357 TCTGAAACCT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
12 21 0.57
13 10 0.27
14 6 0.16
ACGTcount: A:0.51, C:0.18, G:0.09, T:0.22
Consensus pattern (12 bp):
TGAAACCCTAAA
Found at i:16498351 original size:26 final size:25
Alignment explanation
Indices: 16498308--16498356 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
16498298 TTTTTGAAAC
16498308 CCTAAATGAAACCCTAAAATGAAAAT
1 CCTAAATGAAACCCT-AAATGAAAAT
* * *
16498334 CCTAAATGACATCTTAAATGAAA
1 CCTAAATGAAACCCTAAATGAAA
16498357 TCTGAAACCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 8 0.40
26 12 0.60
ACGTcount: A:0.51, C:0.18, G:0.08, T:0.22
Consensus pattern (25 bp):
CCTAAATGAAACCCTAAATGAAAAT
Found at i:16501789 original size:26 final size:26
Alignment explanation
Indices: 16501760--16501818 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
16501750 TTTATTTTAC
* *
16501760 ATATTTATAT-TATTTTTTATAAATAT
1 ATATTTATATATA-TATTTAAAAATAT
*
16501786 ATATTAATATATATATTTAAAAATAT
1 ATATTTATATATATATTTAAAAATAT
16501812 AT-TTTAT
1 ATATTTAT
16501819 TTTAATTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
25 4 0.14
26 22 0.79
27 2 0.07
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (26 bp):
ATATTTATATATATATTTAAAAATAT
Found at i:16503008 original size:30 final size:30
Alignment explanation
Indices: 16502952--16503014 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 30
16502942 TAAATATTTC
*
16502952 TTTTATTAAATTTTATCACATCA-TTTTAT
1 TTTTATCAAATTTTATCACATCATTTTTAT
** *
16502981 TTTTATCAAATTGTTATCATTTTATTTTTAT
1 TTTTATCAAATT-TTATCACATCATTTTTAT
16503012 TTT
1 TTT
16503015 AATGCTTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 11 0.39
30 8 0.29
31 9 0.32
ACGTcount: A:0.27, C:0.08, G:0.02, T:0.63
Consensus pattern (30 bp):
TTTTATCAAATTTTATCACATCATTTTTAT
Found at i:16512070 original size:3 final size:3
Alignment explanation
Indices: 16512062--16512099 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
16512052 TGAGTTTGAA
16512062 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
16512100 AGAGCCAATC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:16513081 original size:55 final size:55
Alignment explanation
Indices: 16512991--16513094 Score: 129
Period size: 55 Copynumber: 1.9 Consensus size: 55
16512981 TATATTTTTC
* * * * * *
16512991 TTATTATTTATTTTATTGGTTGTCTTTATTGTTGATTATCTTTATTTTTTTATTA
1 TTATTATTTACTTTATTGGTTATCTTCATCGTTGATTATCCTTAATTTTTTATTA
*
16513046 TTATTATTTACTTTATTTGTTATCTTCA-CGATTGATTATCCTTAATTTT
1 TTATTATTTACTTTATTGGTTATCTTCATCG-TTGATTATCCTTAATTTT
16513095 AATTTTATCT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
54 1 0.02
55 40 0.98
ACGTcount: A:0.20, C:0.08, G:0.08, T:0.64
Consensus pattern (55 bp):
TTATTATTTACTTTATTGGTTATCTTCATCGTTGATTATCCTTAATTTTTTATTA
Found at i:16514100 original size:11 final size:10
Alignment explanation
Indices: 16514070--16514097 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
16514060 ATCTTTTGGT
16514070 ATTATTTTCC
1 ATTATTTTCC
16514080 ATTATTTTCC
1 ATTATTTTCC
16514090 ATTATTTT
1 ATTATTTT
16514098 TCCCTTTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.21, C:0.14, G:0.00, T:0.64
Consensus pattern (10 bp):
ATTATTTTCC
Found at i:16514170 original size:3 final size:3
Alignment explanation
Indices: 16514162--16514207 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
16514152 AATATTTTTA
16514162 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
16514208 TTTTAGACTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:16514512 original size:38 final size:38
Alignment explanation
Indices: 16514443--16514515 Score: 101
Period size: 38 Copynumber: 1.9 Consensus size: 38
16514433 AATTTGCAAC
** ** *
16514443 AAAATCTTATCAACATATTGGAGGATGTTTTTGAATAG
1 AAAATCTTATCAACATATTAAAAAATATTTTTGAATAG
16514481 AAAATCTTATCAACATATTAAAAAATATTTTTGAA
1 AAAATCTTATCAACATATTAAAAAATATTTTTGAA
16514516 AAATAAAATT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 30 1.00
ACGTcount: A:0.44, C:0.08, G:0.11, T:0.37
Consensus pattern (38 bp):
AAAATCTTATCAACATATTAAAAAATATTTTTGAATAG
Found at i:16516717 original size:102 final size:102
Alignment explanation
Indices: 16516592--16516898 Score: 384
Period size: 102 Copynumber: 3.0 Consensus size: 102
16516582 TATGTTTTTT
* ** *
16516592 TAATAACAATAAAATTTTCAATCCTACCAAACAATTGGAGGATTTAAATTTTGAATTAAGTCTTA
1 TAATAATAATAAAATTTTCAATCCTACCAAATTATTGGAGGATTTAAATATTGAATTAAGTCTTA
* *
16516657 CCAAATTATTGGAGGACTTAATGAATTTTTTTAAAAA
66 CTAAAATATTGGAGGACTTAATGAATTTTTTTAAAAA
* * *
16516694 TAATAATAATAAAATTTTTAATCCTACCAAATTATTGGAAGATTTAAATCTTGAATTAAGTCTTA
1 TAATAATAATAAAATTTTCAATCCTACCAAATTATTGGAGGATTTAAATATTGAATTAAGTCTTA
* * *
16516759 CTAAAATATTAGAGGACTTAATGAATTTTTTTGTAAAT
66 CTAAAATATTGGAGGACTTAATGAATTTTTTT-AAAAA
* * * *
16516797 TAATAATAATAAAAATTTTCAATCTTACCTAATTATTGGAGGATTTAAATATTAAATT-AGATAT
1 TAATAATAAT-AAAATTTTCAATCCTACCAAATTATTGGAGGATTTAAATATTGAATTAAG-TCT
* * * *
16516861 TACTAAACTATTGGAAGG-TTTAATTAATTTTCTTAAAA
64 TACTAAAATATTGG-AGGACTTAATGAATTTTTTTAAAA
16516899 TAAATTTCAT
Statistics
Matches: 177, Mismatches: 24, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
102 88 0.50
103 18 0.10
104 68 0.38
105 3 0.02
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.39
Consensus pattern (102 bp):
TAATAATAATAAAATTTTCAATCCTACCAAATTATTGGAGGATTTAAATATTGAATTAAGTCTTA
CTAAAATATTGGAGGACTTAATGAATTTTTTTAAAAA
Found at i:16518077 original size:18 final size:17
Alignment explanation
Indices: 16518038--16518084 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 17
16518028 CTATCTATTT
**
16518038 TCATTCATTTCATGCATC
1 TCATTCA-TTCATAAATC
16518056 TCATTCATTCATAAATC
1 TCATTCATTCATAAATC
16518073 ATCATT-ATTCAT
1 -TCATTCATTCAT
16518085 TCGTCATGTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 14 0.54
18 12 0.46
ACGTcount: A:0.30, C:0.23, G:0.02, T:0.45
Consensus pattern (17 bp):
TCATTCATTCATAAATC
Found at i:16520048 original size:3 final size:3
Alignment explanation
Indices: 16520040--16520069 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
16520030 ATTAATAGCC
16520040 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
16520070 TAAGCATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:16520109 original size:7 final size:6
Alignment explanation
Indices: 16520086--16520163 Score: 66
Period size: 6 Copynumber: 11.8 Consensus size: 6
16520076 TATAAAATTA
* *
16520086 TAAAAT TAAAAT TAAAACT TAAAACT TAAAAT CAAAAAT TAAAAATT TAAATT
1 TAAAAT TAAAAT TAAAA-T TAAAA-T TAAAAT -TAAAAT T-AAAA-T TAAAAT
*
16520139 TAAAAT TGAAAT TGAAAAAT TAAAA
1 TAAAAT TAAAAT T--AAAAT TAAAA
16520164 AATAAACAAA
Statistics
Matches: 60, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
6 28 0.47
7 25 0.42
8 7 0.12
ACGTcount: A:0.63, C:0.04, G:0.03, T:0.31
Consensus pattern (6 bp):
TAAAAT
Found at i:16520114 original size:20 final size:19
Alignment explanation
Indices: 16520086--16520169 Score: 78
Period size: 20 Copynumber: 4.2 Consensus size: 19
16520076 TATAAAATTA
*
16520086 TAAAATTAAAATTAAAACT
1 TAAAATTAAAATTAAAAAT
*
16520105 TAAAACTTAAAATCAAAAAT
1 TAAAA-TTAAAATTAAAAAT
* *
16520125 TAAAAATTTAAATTTAAAAT
1 T-AAAATTAAAATTAAAAAT
* *
16520145 TGAAATTGAAAAATTAAAAAA
1 TAAAATT--AAAATTAAAAAT
16520166 TAAA
1 TAAA
16520170 CAAATAAAAA
Statistics
Matches: 51, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
19 10 0.20
20 25 0.49
21 16 0.31
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (19 bp):
TAAAATTAAAATTAAAAAT
Found at i:16520164 original size:7 final size:7
Alignment explanation
Indices: 16520079--16520179 Score: 75
Period size: 7 Copynumber: 14.6 Consensus size: 7
16520069 ATAAGCATAT
16520079 AAAATTA
1 AAAATTA
16520086 TAAAATT-
1 -AAAATTA
16520093 AAAATTA
1 AAAATTA
*
16520100 AAACTTA
1 AAAATTA
*
16520107 AAACTT-
1 AAAATTA
*
16520113 AAAATCA
1 AAAATTA
16520120 AAAATTA
1 AAAATTA
16520127 AAAATT-
1 AAAATTA
* *
16520133 TAAATTT
1 AAAATTA
16520140 AAAATT-
1 AAAATTA
*
16520146 GAAATTGA
1 AAAATT-A
16520154 AAAATTA
1 AAAATTA
*
16520161 AAAAATA
1 AAAATTA
*
16520168 AACAAATA
1 AA-AATTA
16520176 AAAA
1 AAAA
16520180 GAAACCAAAT
Statistics
Matches: 78, Mismatches: 9, Indels: 13
0.78 0.09 0.13
Matches are distributed among these distances:
6 20 0.26
7 40 0.51
8 18 0.23
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.28
Consensus pattern (7 bp):
AAAATTA
Found at i:16520279 original size:15 final size:14
Alignment explanation
Indices: 16520227--16520280 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 14
16520217 AAAAATATAT
16520227 AATAACATAA-TAAA
1 AATAA-ATAATTAAA
16520241 AATAAATTAATTAAA
1 AATAAA-TAATTAAA
*
16520256 TAATTAATAATTAAA
1 -AATAAATAATTAAA
16520271 AGATAAATAA
1 A-ATAAATAA
16520281 AAAAGTTTAG
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
13 1 0.03
14 9 0.26
15 19 0.56
16 5 0.15
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (14 bp):
AATAAATAATTAAA
Found at i:16521339 original size:20 final size:20
Alignment explanation
Indices: 16521316--16521356 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
16521306 TATTTTGTTG
16521316 AAAAAAAAACTAAACCTAAA
1 AAAAAAAAACTAAACCTAAA
16521336 AAAAAAAAACTAAACCTAAA
1 AAAAAAAAACTAAACCTAAA
16521356 A
1 A
16521357 TTTCATTCGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.76, C:0.15, G:0.00, T:0.10
Consensus pattern (20 bp):
AAAAAAAAACTAAACCTAAA
Found at i:16522058 original size:62 final size:62
Alignment explanation
Indices: 16521914--16522119 Score: 194
Period size: 61 Copynumber: 3.3 Consensus size: 62
16521904 ATTTTTGACC
* * *
16521914 AAAATGCCTTGAGTAATCCCC-TTCCA-TTTTTTAAGGGATTATTCACGGTGTTTTCGGCTAG
1 AAAATGCCTTGAATAATCCCCTTTCCATTTTTTTAA-GGATTATTCAAGGTGTTTTCAGCTAG
16521975 AAAATGCCTTGAATAAT-CCCTTTCCATTTCTTTTGAA-GATTATTCAAGGTG-TTTCTAGCTA-
1 AAAATGCCTTGAATAATCCCCTTTCCATTT-TTTT-AAGGATTATTCAAGGTGTTTTC-AGCTAG
* ** * *
16522036 AAAATACCTTGAATAATCCCCTTT-CATTTTTTTTTTTTGGGATTATTCAA-GTGTTTTTAGCCA
1 AAAATGCCTTGAATAATCCCCTTTCCA----TTTTTTTAAGGATTATTCAAGGTGTTTTCAGCTA
*
16522099 A
62 G
*
16522100 AAAATGCCTTGTATAATCCC
1 AAAATGCCTTGAATAATCCC
16522120 TTACAAAAAA
Statistics
Matches: 122, Mismatches: 10, Indels: 23
0.79 0.06 0.15
Matches are distributed among these distances:
60 3 0.02
61 43 0.35
62 25 0.20
63 11 0.09
64 37 0.30
65 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (62 bp):
AAAATGCCTTGAATAATCCCCTTTCCATTTTTTTAAGGATTATTCAAGGTGTTTTCAGCTAG
Found at i:16522469 original size:62 final size:61
Alignment explanation
Indices: 16522297--16522517 Score: 205
Period size: 62 Copynumber: 3.6 Consensus size: 61
16522287 TTAAATGGGT
* * * * * * **
16522297 TTATTCAAGGTGTTTTCGGCTAAAAA-CCCATCAAT-AATCCCCTTCTATTTTTTAAAGGA
1 TTATTCAAGGTGTTTTTGGCAAAAAATACCTTGAATAAATCCCCTTCAATTTTTTTTAGGA
* * * * *
16522356 TTATTCAAGGTGTTTTTAGCAAAAAATGCCTTGAAT-AATCCTCTTAAATTTTTTTTAGAAA
1 TTATTCAAGGTGTTTTTGGCAAAAAATACCTTGAATAAATCCCCTTCAATTTTTTTTAG-GA
* ** * *
16522417 TTAGTCAAGGCATTTTTGGCCAAAAATACCTTGAATAAATCCCCTTCCATTTTTTTTAGGGA
1 TTATTCAAGGTGTTTTTGGCAAAAAATACCTTGAATAAATCCCCTTCAATTTTTTTTA-GGA
* * *
16522479 TTATTCAAGGTGTTTTTGACTAGAAAATACCTTTAATAA
1 TTATTCAAGGTGTTTTTGGC-AAAAAATACCTTGAATAA
16522518 TCTCTTATAA
Statistics
Matches: 128, Mismatches: 29, Indels: 6
0.79 0.18 0.04
Matches are distributed among these distances:
59 23 0.18
60 23 0.18
61 31 0.24
62 35 0.27
63 16 0.12
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (61 bp):
TTATTCAAGGTGTTTTTGGCAAAAAATACCTTGAATAAATCCCCTTCAATTTTTTTTAGGA
Found at i:16522810 original size:65 final size:61
Alignment explanation
Indices: 16522656--16522814 Score: 165
Period size: 65 Copynumber: 2.5 Consensus size: 61
16522646 TATTTTTTTG
* * *
16522656 TGGATTATTCAAGACGTTTTTGGCCAAAAAATGTATTGAATAATCCCTTACGAAAAATTGAA
1 TGGATTATTCAAGGCGTTTTTGG-CTAAAAATATATTGAATAATCCCTTACGAAAAATTGAA
* * * * * **
16522718 TGGGATTATTCAAGGCATTTCTAGCTAATAATATCTTGAATAATCCCTTTTAATTAAAAATTAGA
1 T-GGATTATTCAAGGCGTTTTTGGCTAAAAATATATTGAATAATCCC--TT-ACGAAAAATT-GA
16522783 A
61 A
*
16522784 TGGATTATTTAAGGCGTTTTTGGCTAAAAAT
1 TGGATTATTCAAGGCGTTTTTGGCTAAAAAT
16522815 GCCTTAAATA
Statistics
Matches: 77, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
62 20 0.26
63 18 0.23
64 2 0.03
65 33 0.43
66 4 0.05
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (61 bp):
TGGATTATTCAAGGCGTTTTTGGCTAAAAATATATTGAATAATCCCTTACGAAAAATTGAA
Found at i:16522825 original size:65 final size:61
Alignment explanation
Indices: 16522656--16522958 Score: 209
Period size: 63 Copynumber: 4.8 Consensus size: 61
16522646 TATTTTTTTG
* * *
16522656 TGGATTATTCAAGACGTTTTTGGCCAAAAAATGTATTGAATAATCCCTTACGAAAAATTGAA
1 TGGATTATTCAAGGCGTTTTTGG-CTAAAAATGTCTTGAATAATCCCTTACGAAAAATTGAA
* * * * * **
16522718 TGGGATTATTCAAGGCATTTCTAGCTAATAATATCTTGAATAATCCCTTTTAATTAAAAATTAGA
1 T-GGATTATTCAAGGCGTTTTTGGCTAAAAATGTCTTGAATAATCCC--TT-ACGAAAAATT-GA
16522783 A
61 A
* * * * * * ** ***
16522784 TGGATTATTTAAGGCGTTTTTGGCTAAAAATGCCTTAAATAAT-CTTTTCCAATATTTTTTTT
1 TGGATTATTCAAGGCGTTTTTGGCTAAAAATGTCTTGAATAATCCCTTACGAA-A-AATTGAA
* * * *
16522846 TGGGATTATTCGAGGCATTTTTGGCCAAACAATGTCTTGAATAATCCCTTAC-AAAAAATGAAA
1 T-GGATTATTCAAGGCGTTTTTGGCTAAA-AATGTCTTGAATAATCCCTTACGAAAAATTG-AA
*
16522909 TGGAGTTATTCAAGGC-TTTTCTGGCCAAAAATG-CTTTGAATAATTCCCTT
1 TGGA-TTATTCAAGGCGTTTT-TGGCTAAAAATGTC-TTGAATAA-TCCCTT
16522959 CAATTAGAAG
Statistics
Matches: 184, Mismatches: 42, Indels: 29
0.72 0.16 0.11
Matches are distributed among these distances:
61 3 0.02
62 44 0.24
63 69 0.38
64 18 0.10
65 46 0.25
66 4 0.02
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37
Consensus pattern (61 bp):
TGGATTATTCAAGGCGTTTTTGGCTAAAAATGTCTTGAATAATCCCTTACGAAAAATTGAA
Found at i:16524277 original size:13 final size:13
Alignment explanation
Indices: 16524259--16524308 Score: 64
Period size: 13 Copynumber: 3.7 Consensus size: 13
16524249 TAAAACCCCA
16524259 AAATTGAAATCCT
1 AAATTGAAATCCT
*
16524272 AAATTGAAAACCCTT
1 AAATTG-AAATCC-T
*
16524287 ATATTGAAATCCT
1 AAATTGAAATCCT
16524300 AAATTGAAA
1 AAATTGAAA
16524309 CCGTAAGATT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
13 15 0.48
14 10 0.32
15 6 0.19
ACGTcount: A:0.48, C:0.14, G:0.08, T:0.30
Consensus pattern (13 bp):
AAATTGAAATCCT
Found at i:16524281 original size:28 final size:28
Alignment explanation
Indices: 16524240--16524308 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 28
16524230 GTTCATAAAT
16524240 TCCTAAAATT-AAAACCCCAAAATTGAAA
1 TCCT-AAATTGAAAACCCCAAAATTGAAA
** *
16524268 TCCTAAATTGAAAACCCTTATATTGAAA
1 TCCTAAATTGAAAACCCCAAAATTGAAA
16524296 TCCTAAATTGAAA
1 TCCTAAATTGAAA
16524309 CCGTAAGATT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 5 0.14
28 32 0.86
ACGTcount: A:0.48, C:0.19, G:0.06, T:0.28
Consensus pattern (28 bp):
TCCTAAATTGAAAACCCCAAAATTGAAA
Found at i:16527421 original size:64 final size:64
Alignment explanation
Indices: 16527324--16527447 Score: 214
Period size: 64 Copynumber: 1.9 Consensus size: 64
16527314 AAACTCATGC
*
16527324 AAAAAAAAAAAAAGAAAAGCGAAATGGCATGTTTTGAGAAAAGGAAAGATGTTTCTGGAAGCAA
1 AAAAAAAAAAAAAGAAAAGCGAAATGGCATGTTTTGAGAAAAAGAAAGATGTTTCTGGAAGCAA
*
16527388 AAAAAAAAAAAAAGATAAGC-AAAGTGGCATGTTTTGAGAAAAAGAAAGATGTTTCTGGAA
1 AAAAAAAAAAAAAGAAAAGCGAAA-TGGCATGTTTTGAGAAAAAGAAAGATGTTTCTGGAA
16527448 AAAACAATGA
Statistics
Matches: 57, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
63 3 0.05
64 54 0.95
ACGTcount: A:0.53, C:0.06, G:0.23, T:0.19
Consensus pattern (64 bp):
AAAAAAAAAAAAAGAAAAGCGAAATGGCATGTTTTGAGAAAAAGAAAGATGTTTCTGGAAGCAA
Found at i:16529021 original size:84 final size:83
Alignment explanation
Indices: 16528865--16529021 Score: 183
Period size: 84 Copynumber: 1.9 Consensus size: 83
16528855 TCCTTCGAAT
* * * * * *
16528865 AAGATTCATAAGTCTTTCGAGCTGAATCTATTTTAGAGTTGAGATTTGCAAGACCTCCGGATGTA
1 AAGATTCATAAGTATTTCGAGCTAAATATATTTTAGAGTTAAGATTTGCAAAACCTCCGCA-GTA
*
16528930 ATTTCTAACTCTTTCTTGC
65 ATCTCTAACTCTTTCTTGC
* *
16528949 AAGATTCATAAGTATTGT-GAGCTAAATATGTTTTAGAGTTAAGATTTGTAAAACCTCCAAGCA-
1 AAGATTCATAAGTATT-TCGAGCTAAATATATTTTAGAGTTAAGATTTGCAAAACCTCC--GCAG
16529012 TAATCTCTAA
63 TAATCTCTAA
16529022 TACCTCTAGG
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
84 58 0.95
85 1 0.02
86 2 0.03
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (83 bp):
AAGATTCATAAGTATTTCGAGCTAAATATATTTTAGAGTTAAGATTTGCAAAACCTCCGCAGTAA
TCTCTAACTCTTTCTTGC
Found at i:16530389 original size:104 final size:104
Alignment explanation
Indices: 16530249--16530535 Score: 366
Period size: 104 Copynumber: 2.8 Consensus size: 104
16530239 ATATATTTTT
* *
16530249 TAATAATAATAAAATTTTCAACCCTACCAAACTATTGGAGGATTTAAATCTTGAATTAAGTCTTA
1 TAATAATAAT-AAATTTTCAATCATACCAAACTATTGGAGGATTTAAATCTTGAATTAAGTCTTA
* *
16530314 CCAAACTATTGTAGGACTTAAT-AAATTTTT-TAAAAGTAA
65 CCAAACTATTGGAAGACTTAATGAAATTTTTGTAAAA-TAA
* * **
16530353 TAATAATAATAAACTTTTTAATCATACCAAACTATTGGAGGGTTTTGATCTTGAATTAAGTCTTA
1 TAATAATAATAAA-TTTTCAATCATACCAAACTATTGGAGGATTTAAATCTTGAATTAAGTCTTA
* * *
16530418 CAAAAATATTGGAAGACTTAATGAATTTTTTGTAAAATAA
65 CCAAACTATTGGAAGACTTAATGAAATTTTTGTAAAATAA
* * * * *
16530458 TAACAATAA-AAATTTTCAATCTTACAAAACTGTTGGAGGATTTAAATATTGAATT-AGATCTTA
1 TAATAATAATAAATTTTCAATCATACCAAACTATTGGAGGATTTAAATCTTGAATTAAG-TCTTA
16530521 CCAAACTATTGGAAG
65 CCAAACTATTGGAAG
16530536 GTTTAATGGA
Statistics
Matches: 157, Mismatches: 22, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
102 2 0.01
103 56 0.36
104 76 0.48
105 18 0.11
106 5 0.03
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (104 bp):
TAATAATAATAAATTTTCAATCATACCAAACTATTGGAGGATTTAAATCTTGAATTAAGTCTTAC
CAAACTATTGGAAGACTTAATGAAATTTTTGTAAAATAA
Found at i:16530531 original size:103 final size:102
Alignment explanation
Indices: 16530249--16530559 Score: 376
Period size: 103 Copynumber: 3.0 Consensus size: 102
16530239 ATATATTTTT
* *
16530249 TAATAATAAT-AAAATTTTCAACCCTACCAAACTATTGGAGGATTTAAATCTTGAATTAAGTCTT
1 TAATAATAATAAAAATTTTCAATCATACCAAACTATTGGAGGATTTAAATCTTGAATTAAGTCTT
* * *
16530313 ACCAAACTATTGTAGGACTTAAT-AAATTTTTTAAAA
66 ACCAAACTATTGGAAGACTTAATGAATTTTTTTAAAA
* * **
16530349 GTAATAATAATAATAAACTTTTTAATCATACCAAACTATTGGAGGGTTTTGATCTTGAATTAAGT
1 -TAATAATAATAA-AAA-TTTTCAATCATACCAAACTATTGGAGGATTTAAATCTTGAATTAAGT
* *
16530414 CTTACAAAAATATTGGAAGACTTAATGAATTTTTTGTAAAA
63 CTTACCAAACTATTGGAAGACTTAATGAATTTTTT-TAAAA
* * * * *
16530455 TAATAACAATAAAAATTTTCAATCTTACAAAACTGTTGGAGGATTTAAATATTGAATT-AGATCT
1 TAATAATAATAAAAATTTTCAATCATACCAAACTATTGGAGGATTTAAATCTTGAATTAAG-TCT
** * *
16530519 TACCAAACTATTGGAAGGTTTAATGGATTTTCTTAAAA
65 TACCAAACTATTGGAAGACTTAATGAATTTTTTTAAAA
16530557 TAA
1 TAA
16530560 ATTTCATACA
Statistics
Matches: 178, Mismatches: 26, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
101 10 0.06
102 11 0.06
103 68 0.38
104 66 0.37
105 18 0.10
106 5 0.03
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (102 bp):
TAATAATAATAAAAATTTTCAATCATACCAAACTATTGGAGGATTTAAATCTTGAATTAAGTCTT
ACCAAACTATTGGAAGACTTAATGAATTTTTTTAAAA
Found at i:16534701 original size:7 final size:7
Alignment explanation
Indices: 16534676--16534719 Score: 56
Period size: 7 Copynumber: 6.6 Consensus size: 7
16534666 TAAGTTGCGA
16534676 AAAAAAG
1 AAAAAAG
*
16534683 -AAGAA-
1 AAAAAAG
16534688 AAAAAAG
1 AAAAAAG
*
16534695 TAAAAAG
1 AAAAAAG
16534702 AAAAAAG
1 AAAAAAG
16534709 AAAAAAG
1 AAAAAAG
16534716 AAAA
1 AAAA
16534720 GAAATTGATT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
6 8 0.26
7 23 0.74
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (7 bp):
AAAAAAG
Found at i:16534705 original size:14 final size:13
Alignment explanation
Indices: 16534676--16534723 Score: 55
Period size: 12 Copynumber: 3.8 Consensus size: 13
16534666 TAAGTTGCGA
*
16534676 AAAAAAGAAGAA-
1 AAAAAAGAAAAAG
16534688 AAAAAAGTAAAAAG
1 AAAAAAG-AAAAAG
16534702 AAAAAAGAAAAA-
1 AAAAAAGAAAAAG
*
16534714 AGAAAAGAAA
1 AAAAAAGAAA
16534724 TTGATTATGA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
12 16 0.50
13 9 0.28
14 7 0.22
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (13 bp):
AAAAAAGAAAAAG
Done.