Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25818110
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 67000 characters in sequence are not A, C, G, or T
File 89 of 127
Found at i:16866629 original size:36 final size:36
Alignment explanation
Indices: 16866529--16868181 Score: 352
Period size: 36 Copynumber: 46.5 Consensus size: 36
16866519 TGTTATCCTA
* * * *
16866529 ATCATCTTTATTTTTTTTAACTTATGGTGTTCTCTTG
1 ATCATCTTTA-TTTTTTTGACTTATAGTGTTGTCTCG
* * * ** *
16866566 GTCATATTTA--TTTTTGACCTACGGTGTTGTCTCA
1 ATCATCTTTATTTTTTTGACTTATAGTGTTGTCTCG
* * * *
16866600 ATCATCTTTATTTTTTTGACTTGTTGTGTTGTATTG
1 ATCATCTTTATTTTTTTGACTTATAGTGTTGTCTCG
* * * * * **
16866636 GTCTTACTTTATTTTTTTGAC-CATTGGTGTTATCTTA
1 ATCAT-CTTTATTTTTTTGACTTA-TAGTGTTGTCTCG
* * *
16866673 ATCATCTTTATTTATTTGACTTACAGTGCTGTC-CTG
1 ATCATCTTTATTTTTTTGACTTATAGTGTTGTCTC-G
* * * * * *
16866709 ATCAT-ATTATTTTTTTAACCTACAGTGTTGTCCCC
1 ATCATCTTTATTTTTTTGACTTATAGTGTTGTCTCG
* * * *
16866744 ATCATGTTTATTTTTTTGACCTATGGTGTTTTCTCG
1 ATCATCTTTATTTTTTTGACTTATAGTGTTGTCTCG
* * * *
16866780 ATCATATTTATTTTTTCGAC-CATAGGTGTTGTC-CTA
1 ATCATCTTTATTTTTTTGACTTATA-GTGTTGTCTC-G
* * *
16866816 ATCATCTTTA-TTTTTTAACCTT-CAGTGTTGTCTCA
1 ATCATCTTTATTTTTTTGA-CTTATAGTGTTGTCTCG
* * * ** *
16866851 ATCATCTTTA-TTTTTTAACTTGTGGTGTCATCCCG
1 ATCATCTTTATTTTTTTGACTTATAGTGTTGTCTCG
* * * * * * *
16866886 ATCATCTTTGTTTCTCTAACCTATCA-TGTTGTTTTG
1 ATCATCTTTATTTTTTTGACTTAT-AGTGTTGTCTCG
* * * * *
16866922 ACCATTTTTATTTTTGTAACTTGTAGTGTTGTCTCG
1 ATCATCTTTATTTTTTTGACTTATAGTGTTGTCTCG
* * ** *
16866958 ATTATCTTTA-TTTTTTAACTTACGGTGTTGTCTCA
1 ATCATCTTTATTTTTTTGACTTATAGTGTTGTCTCG
* * * *
16866993 ATCATATTTTATTTTTTTTGACTGT-TGGTGTTATCTTG
1 ATCAT-CTTTA-TTTTTTTGACT-TATAGTGTTGTCTCG
* * * *
16867031 ATCATCTTTATGTTTCTGACTCACT-GCGTTGTCTCG
1 ATCATCTTTATTTTTTTGACTTA-TAGTGTTGTCTCG
* * * * * * * *
16867067 ATCATCTTTATTTCTCTAACTTATGGTATTATCCCA
1 ATCATCTTTATTTTTTTGACTTATAGTGTTGTCTCG
* *
16867103 ATCATATTTATTTTTTTGACTTAT-GATGTTGT-TCCA
1 ATCATCTTTATTTTTTTGACTTATAG-TGTTGTCT-CG
* * * * * *
16867139 ATCATATTTATTTTCTCGA-TCATTGTTGATGTCTC-
1 ATCATCTTTATTTTTTTGACTTATAG-TGTTGTCTCG
* ** *
16867174 AGTTATC-TT-TTTTTTT-ACTTACGGTATTGTCT--
1 A-TCATCTTTATTTTTTTGACTTATAGTGTTGTCTCG
* * *
16867206 -T-AGTCATT-TTTTTTT-ACTTACAGTGTTATC-CTG
1 ATCA-TCTTTATTTTTTTGACTTATAGTGTTGTCTC-G
* * * *** ** * * *
16867239 GTCATCTTTGTTTCTCCAACTTGCAGTGTCGTCACA
1 ATCATCTTTATTTTTTTGACTTATAGTGTTGTCTCG
* * ** * *
16867275 ATCATTTTTATTTTTTTAACTTGCAATGTTGTCTCA
1 ATCATCTTTATTTTTTTGACTTATAGTGTTGTCTCG
*
16867311 ATCA-CATTT-TGTTTTCTTGAC-TATAGTTGTTATCTC-
1 ATCATC-TTTAT-TTTT-TTGACTTATAG-TGTTGTCTCG
* * *** * *
16867347 A--AGCTTTATGTTTCAAACTTACAGTGTTGTC-CTA
1 ATCATCTTTATTTTTTTGACTTATAGTGTTGTCTC-G
* ** * *
16867381 ATCATCTTTATTTTTTTCGACCTACGGTGTTAG-CCCA
1 ATCATCTTTATTTTTTT-GACTTATAGTGTT-GTCTCG
* * * * *
16867418 ATCATCTTCA-TTTTTTAACTTGTAGCGTTATCTCG
1 ATCATCTTTATTTTTTTGACTTATAGTGTTGTCTCG
* * * * * * *
16867453 ATCATCTTTGTTTCTCTAACCTATAGTATTGTCTTG
1 ATCATCTTTATTTTTTTGACTTATAGTGTTGTCTCG
* * * * *
16867489 GTCATATTTATGTTTTTGACTTACCA-TGTTATCTCG
1 ATCATCTTTATTTTTTTGACTTA-TAGTGTTGTCTCG
* * *
16867525 ATCATTTTTATTTATTTGACTTATAATGTTGTC-CTG
1 ATCATCTTTATTTTTTTGACTTATAGTGTTGTCTC-G
* * * *
16867561 ATCA-CTTT-TATTTTTTAATTTACAGTGTTGTCTCA
1 ATCATCTTTAT-TTTTTTGACTTATAGTGTTGTCTCG
* * * ** * * *
16867596 ATCATCTTTGTTTCTTTAACCTGCT-GTATTGTTTTG
1 ATCATCTTTATTTTTTTGA-CTTATAGTGTTGTCTCG
* * * *
16867632 ATCATTTTTA-TTTTTTGACTTACAATGTTGTCCCCG
1 ATCATCTTTATTTTTTTGACTTATAGTGTTGT-CTCG
* * * * ** * *
16867668 -TTATTTTTA-TTTTTTAACTTGTAGTACTATTTCG
1 ATCATCTTTATTTTTTTGACTTATAGTGTTGTCTCG
* ***** * * * *
16867702 ATCATCTTTGTTTCCCCAACCTATCGTGTTATCTCA
1 ATCATCTTTATTTTTTTGACTTATAGTGTTGTCTCG
* * *
16867738 ATCATCTTTATTTTTTTGACCTATAGTATTAT-TCTG
1 ATCATCTTTATTTTTTTGACTTATAGTGTTGTCTC-G
* * * * * * *
16867774 ATCATTTTTATTTTTTTAACATGTGGTGTTATC-CA
1 ATCATCTTTATTTTTTTGACTTATAGTGTTGTCTCG
* * * * * *
16867809 AGCCATTTTTA-TTTTTTGACTTGTAGTATTATC-CC
1 A-TCATCTTTATTTTTTTGACTTATAGTGTTGTCTCG
* * *
16867844 AGTCATCTTTATTTTTCTGACTTA-CGATGTTGTC-CC
1 A-TCATCTTTATTTTTTTGACTTATAG-TGTTGTCTCG
* * * * *
16867880 AGTCATTTTTA-TTTTTTAACTTATAGTGCTATCCTGG
1 A-TCATCTTTATTTTTTTGACTTATAGTGTTGT-CTCG
* * ** * * * * *
16867917 CT-ATCTTTGTTACTTTAACCTATGGTGTTATCTTG
1 ATCATCTTTATTTTTTTGACTTATAGTGTTGTCTCG
* * * * * *
16867952 GTCATTTTTA-TTTTTTGACCTACATTGTTGTCTCA
1 ATCATCTTTATTTTTTTGACTTATAGTGTTGTCTCG
* * ** *
16867987 ATCATATTTA-TTTTTTGACTTATGGTGTCATCTTG
1 ATCATCTTTATTTTTTTGACTTATAGTGTTGTCTCG
* * * *
16868022 GTCAT-TTTATTTCTTTGACCTGT-GATGTTGTCTC-
1 ATCATCTTTATTTTTTTGACTTATAG-TGTTGTCTCG
* *
16868056 AGTCATCTTTATTTTTTTGACTTGTAGTGTTATC-CTG
1 A-TCATCTTTATTTTTTTGACTTATAGTGTTGTCTC-G
* ** *
16868093 ATCATCTTTA-TTTTTTGATTTACGGTGTTGTCTCA
1 ATCATCTTTATTTTTTTGACTTATAGTGTTGTCTCG
* * * * *
16868128 ATCATATTTTATTTTTTTTAC-CATTGGTGTTGTCT-T
1 ATCAT-CTTTATTTTTTTGACTTA-TAGTGTTGTCTCG
16868164 AGTCATCTTTATTTTTTT
1 A-TCATCTTTATTTTTTT
16868182 CGACCTGCAA
Statistics
Matches: 1168, Mismatches: 358, Indels: 181
0.68 0.21 0.11
Matches are distributed among these distances:
29 1 0.00
30 3 0.00
31 21 0.02
32 1 0.00
33 15 0.01
34 64 0.05
35 345 0.30
36 590 0.51
37 102 0.09
38 25 0.02
39 1 0.00
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.52
Consensus pattern (36 bp):
ATCATCTTTATTTTTTTGACTTATAGTGTTGTCTCG
Found at i:16866647 original size:71 final size:71
Alignment explanation
Indices: 16866528--16867152 Score: 293
Period size: 71 Copynumber: 8.7 Consensus size: 71
16866518 GTGTTATCCT
* * *
16866528 AATCATCTTTATTTTTTTTAACTTATGGTGTTCTCTTGGTCATATTTA-TTTTTGACCTACGGTG
1 AATCATCTTTA-TTTTTTTGACTTATGGTGTTGTCTTGATCATATTTATTTTTTGACCTACGGTG
16866592 TTGTCTC
65 TTGTCTC
* * * * * *
16866599 AATCATCTTTATTTTTTTGACTTGTTGTGTTGTATTGGTCTTACTTTATTTTTTTGACC-ATTGG
1 AATCATCTTTATTTTTTTGACTTATGGTGTTGTCTTGATCATA-TTTA-TTTTTTGACCTA-CGG
* *
16866663 TGTTATCTT
63 TGTTGTCTC
* ** * * * *
16866672 AATCATCTTTATTTATTTGACTTACAGTGCTGTCCTGATCATA-TTATTTTTTTAACCTACAGTG
1 AATCATCTTTATTTTTTTGACTTATGGTGTTGTCTTGATCATATTTA-TTTTTTGACCTACGGTG
*
16866736 TTGTCCC
65 TTGTCTC
* * * * *
16866743 CATCATGTTTATTTTTTTGACCTATGGTGTTTTCTCGATCATATTTATTTTTTCGACCATA-GGT
1 AATCATCTTTATTTTTTTGACTTATGGTGTTGTCTTGATCATATTTATTTTTT-GACC-TACGGT
16866807 GTTGTC-C
64 GTTGTCTC
* ** * * * **
16866814 TAATCATCTTTA-TTTTTTAACCTTCA--GTGTTGTCTCAATCATCTTTATTTTTTAACTTGTGG
1 -AATCATCTTTATTTTTTTGA-CTT-ATGGTGTTGTCTTGATCATATTTATTTTTTGACCTACGG
** *
16866876 TGTCATCCC
63 TGTTGTCTC
* * * * * * ** * * * * * ***
16866885 GATCATCTTTGTTTCTCTAACCTATCATGTTGTTTTGACCATTTTTATTTTTGTAACTTGTAGTG
1 AATCATCTTTATTTTTTTGACTTATGGTGTTGTCTTGATCATATTTATTTTT-TGACCTACGGTG
16866950 TTGTCTC
65 TTGTCTC
* * * * ** **
16866957 GATTATCTTTA-TTTTTTAACTTACGGTGTTGTCTCAATCATATTTTATTTTTTTTGA-CTGTTG
1 AATCATCTTTATTTTTTTGACTTATGGTGTTGTCTTGATCATA-TTTA--TTTTTTGACCT-ACG
* *
16867020 GTGTTATCTT
62 GTGTTGTCTC
* * * * * * * * * * *
16867030 GATCATCTTTATGTTTCTGACTCACT-GCGTTGTCTCGATCATCTTTATTTCTCTAACTTATGGT
1 AATCATCTTTATTTTTTTGACTTA-TGGTGTTGTCTTGATCATATTTATTT-TTTGACCTACGGT
* * *
16867094 ATTATCCC
64 GTTGTCTC
* * **
16867102 AATCATATTTATTTTTTTGACTTATGATGTTGT-TCCAATCATATTTATTTT
1 AATCATCTTTATTTTTTTGACTTATGGTGTTGTCT-TGATCATATTTATTTT
16867153 CTCGATCATT
Statistics
Matches: 420, Mismatches: 107, Indels: 54
0.72 0.18 0.09
Matches are distributed among these distances:
69 2 0.00
70 46 0.11
71 159 0.38
72 105 0.25
73 81 0.19
74 27 0.06
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.52
Consensus pattern (71 bp):
AATCATCTTTATTTTTTTGACTTATGGTGTTGTCTTGATCATATTTATTTTTTGACCTACGGTGT
TGTCTC
Found at i:16866733 original size:35 final size:36
Alignment explanation
Indices: 16866680--16866766 Score: 104
Period size: 35 Copynumber: 2.4 Consensus size: 36
16866670 TTAATCATCT
* * **
16866680 TTATTTATTTGACTTACAGTGCTGTCCTGATCAT-A
1 TTATTTTTTTGACCTACAGTGCTGTCCCCATCATGA
* * *
16866715 TTATTTTTTTAACCTACAGTGTTGTCCCCATCATGT
1 TTATTTTTTTGACCTACAGTGCTGTCCCCATCATGA
16866751 TTATTTTTTTGACCTA
1 TTATTTTTTTGACCTA
16866767 TGGTGTTTTC
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
35 28 0.65
36 15 0.35
ACGTcount: A:0.21, C:0.18, G:0.11, T:0.49
Consensus pattern (36 bp):
TTATTTTTTTGACCTACAGTGCTGTCCCCATCATGA
Found at i:16866754 original size:107 final size:107
Alignment explanation
Indices: 16866642--16866866 Score: 269
Period size: 107 Copynumber: 2.1 Consensus size: 107
16866632 ATTGGTCTTA
* * *
16866642 CTTTATTTTTTTGACC-ATTGGTGTTATCTTAATCATCTTTATTTATTT-GA-CTTACAGTGCTG
1 CTTTATTTTTTTGACCTA-TGGTGTTATCTCAATCATATTTATTT-TTTCGACCATA-AGTGCTG
* *
16866704 TCCTGATCATA-TTATTTTTTTAACCTACAGTGTTGTCCCCATCAT
63 TCCTAATCATATTTA-TTTTTTAACCTACAGTGTTGTCCCAATCAT
* * * * *
16866749 GTTTATTTTTTTGACCTATGGTGTTTTCTCGATCATATTTATTTTTTCGACCATAGGTGTTGTCC
1 CTTTATTTTTTTGACCTATGGTGTTATCTCAATCATATTTATTTTTTCGACCATAAGTGCTGTCC
* * *
16866814 TAATCATCTTTATTTTTTAACCTTCAGTGTTGTCTCAATCAT
66 TAATCATATTTATTTTTTAACCTACAGTGTTGTCCCAATCAT
16866856 CTTTATTTTTT
1 CTTTATTTTTT
16866867 AACTTGTGGT
Statistics
Matches: 100, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
106 3 0.03
107 90 0.90
108 7 0.07
ACGTcount: A:0.19, C:0.17, G:0.12, T:0.52
Consensus pattern (107 bp):
CTTTATTTTTTTGACCTATGGTGTTATCTCAATCATATTTATTTTTTCGACCATAAGTGCTGTCC
TAATCATATTTATTTTTTAACCTACAGTGTTGTCCCAATCAT
Found at i:16867243 original size:31 final size:31
Alignment explanation
Indices: 16867181--16867243 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
16867171 CTCAGTTATC
* * *
16867181 TTTTTTTTTACTTACGGTATTGTCTTAGTCA
1 TTTTTTTTTACTTACAGTATTATCCTAGTCA
* *
16867212 TTTTTTTTTACTTACAGTGTTATCCTGGTCA
1 TTTTTTTTTACTTACAGTATTATCCTAGTCA
16867243 T
1 T
16867244 CTTTGTTTCT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.16, C:0.14, G:0.13, T:0.57
Consensus pattern (31 bp):
TTTTTTTTTACTTACAGTATTATCCTAGTCA
Found at i:16867710 original size:106 final size:107
Alignment explanation
Indices: 16867524--16867715 Score: 253
Period size: 106 Copynumber: 1.8 Consensus size: 107
16867514 ATGTTATCTC
* * * **
16867524 GATCATTTTTATTTATTTGACTTATAATGTTGTCCTGATCACTTTTATTTTTTAATTTACAGTGT
1 GATCATTTTTATTTATTTGACTTACAATGTTGTCCCGATCACTTTTATTTTTTAACTTACAGTAC
*
16867589 TGTCTCAATCATCTTTGTTTCTTTAACCTGCTGTATTGTTTT
66 TATCTCAATCATCTTTGTTTCTTTAACCTGCTGTATTGTTTT
* * **
16867631 GATCATTTTTATTT-TTTGACTTACAATGTTGTCCCCG-TTATTTTTATTTTTTAACTTGTAGTA
1 GATCATTTTTATTTATTTGACTTACAATGTTGT-CCCGATCACTTTTATTTTTTAACTTACAGTA
* *
16867694 CTATTTCGATCATCTTTGTTTC
65 CTATCTCAATCATCTTTGTTTC
16867716 CCCAACCTAT
Statistics
Matches: 72, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
106 55 0.76
107 17 0.24
ACGTcount: A:0.19, C:0.15, G:0.11, T:0.55
Consensus pattern (107 bp):
GATCATTTTTATTTATTTGACTTACAATGTTGTCCCGATCACTTTTATTTTTTAACTTACAGTAC
TATCTCAATCATCTTTGTTTCTTTAACCTGCTGTATTGTTTT
Found at i:16867825 original size:35 final size:35
Alignment explanation
Indices: 16867776--16867859 Score: 96
Period size: 35 Copynumber: 2.4 Consensus size: 35
16867766 TTATTCTGAT
* *
16867776 CATTTTTATTTTTTTAACATGTGGTGTTATCCAAGC
1 CATTTTTA-TTTTTTAACATGTAGTATTATCCAAGC
* * * *
16867812 CATTTTTATTTTTTGACTTGTAGTATTATCCCAGT
1 CATTTTTATTTTTTAACATGTAGTATTATCCAAGC
*
16867847 CATCTTTATTTTT
1 CATTTTTATTTTT
16867860 CTGACTTACG
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
35 33 0.80
36 8 0.20
ACGTcount: A:0.20, C:0.14, G:0.11, T:0.55
Consensus pattern (35 bp):
CATTTTTATTTTTTAACATGTAGTATTATCCAAGC
Found at i:16867887 original size:71 final size:70
Alignment explanation
Indices: 16867631--16867906 Score: 205
Period size: 71 Copynumber: 3.9 Consensus size: 70
16867621 GTATTGTTTT
* * * * * * * *
16867631 GATCATTTTTATTTTT-TGACTTACAATGTTGTCCCCGTTATTTTTATTTTTTAACTTGTAGTAC
1 GATCATCTTTATTTTTCTAACTTACGATGTTATCCCAGTCATTTTTATTTTTTAACTTATAGTAT
16867695 TATTTC
66 TA-TTC
* ** * * * * * * *
16867701 GATCATCTTTGTTTCCCCAACCTATCG-TGTTATCTCAATCATCTTTATTTTTTTGACCTATAGT
1 GATCATCTTTATTTTTCTAACTTA-CGATGTTATCCCAGTCATTTTTA-TTTTTTAACTTATAGT
16867765 ATTATTC
64 ATTATTC
* * * ** * * * * *
16867772 TGATCATTTTTATTTTTTTAACATGTGGTGTTATCCAAGCCATTTTTATTTTTTGACTTGTAGTA
1 -GATCATCTTTATTTTTCTAACTTACGATGTTATCCCAGTCATTTTTATTTTTTAACTTATAGTA
*
16867837 TTATCC
65 TTATTC
* * *
16867843 CAGTCATCTTTATTTTTCTGACTTACGATGTTGTCCCAGTCATTTTTATTTTTTAACTTATAGT
1 GA-TCATCTTTATTTTTCTAACTTACGATGTTATCCCAGTCATTTTTATTTTTTAACTTATAGT
16867907 GCTATCCTGG
Statistics
Matches: 152, Mismatches: 48, Indels: 11
0.72 0.23 0.05
Matches are distributed among these distances:
70 13 0.09
71 91 0.60
72 48 0.32
ACGTcount: A:0.21, C:0.17, G:0.11, T:0.52
Consensus pattern (70 bp):
GATCATCTTTATTTTTCTAACTTACGATGTTATCCCAGTCATTTTTATTTTTTAACTTATAGTAT
TATTC
Found at i:16868020 original size:70 final size:70
Alignment explanation
Indices: 16867937--16868222 Score: 267
Period size: 71 Copynumber: 4.0 Consensus size: 70
16867927 TACTTTAACC
*
16867937 TATGGTGTTATCTTGGTCATTTTTATTTTTTGACCTACATTGTTGTCTCAATCATATTTA-TTTT
1 TATGGTGTTATCTTGGTCATCTTTATTTTTTGACCTACA-TGTTGTCTCAATCATATTTATTTTT
16868001 TTGACT
65 TTGACT
* ** * *
16868007 TATGGTGTCATCTTGGTCAT-TTTATTTCTTTGACCTGTGATGTTGTCTCAGTCATCTTTATTTT
1 TATGGTGTTATCTTGGTCATCTTTATTT-TTTGACCT-ACATGTTGTCTCAATCATATTTATTTT
16868071 TTTGACT
64 TTTGACT
* * * * ** *
16868078 TGTAGTGTTATCCTGATCATCTTTATTTTTTGATTTACGGTGTTGTCTCAATCATATTTTATTTT
1 TATGGTGTTATCTTGGTCATCTTTATTTTTTGACCTAC-ATGTTGTCTCAATCATA-TTTATTTT
*
16868143 TTTTAC-
64 TTTGACT
* * * * * *
16868149 CATTGGTGTTGTCTTAGTCATCTTTATTTTTTTCGACCTGCAATGTTGTACT-AGTCATGTTTA-
1 TA-TGGTGTTATCTTGGTCATCTTTA-TTTTTT-GACCTAC-ATGTTGT-CTCAATCATATTTAT
16868212 TTTTTTGACT
61 TTTTTTGACT
16868222 T
1 T
16868223 GCGGTATTGT
Statistics
Matches: 171, Mismatches: 34, Indels: 19
0.76 0.15 0.08
Matches are distributed among these distances:
69 7 0.04
70 45 0.26
71 46 0.27
72 46 0.27
73 10 0.06
74 15 0.09
75 2 0.01
ACGTcount: A:0.17, C:0.14, G:0.15, T:0.55
Consensus pattern (70 bp):
TATGGTGTTATCTTGGTCATCTTTATTTTTTGACCTACATGTTGTCTCAATCATATTTATTTTTT
TGACT
Found at i:16868039 original size:35 final size:35
Alignment explanation
Indices: 16867739--16868679 Score: 166
Period size: 36 Copynumber: 26.4 Consensus size: 35
16867729 GTTATCTCAA
* * * *
16867739 TCATCTTTATTTTTTTGACCTATAGTATTAT-TCTGA
1 TCATCTTTA-TTTTTTGACTTATGGTGTTATCT-TGG
* * * * ***
16867775 TCATTTTTATTTTTTTAACATGTGGTGTTATCCAAG
1 TCATCTTTA-TTTTTTGACTTATGGTGTTATCTTGG
* * * * * ***
16867811 CCATTTTTATTTTTTGACTTGTAGTATTATCCCAG
1 TCATCTTTATTTTTTGACTTATGGTGTTATCTTGG
* * * ***
16867846 TCATCTTTATTTTTCTGACTTACGATGTTGTCCCAG
1 TCATCTTTATTTTT-TGACTTATGGTGTTATCTTGG
* * * * *
16867882 TCATTTTTATTTTTTAACTTATAGTGCTATCCTGG
1 TCATCTTTATTTTTTGACTTATGGTGTTATCTTGG
* * * *
16867917 -CTATCTTTGTTACTTTAACCTATGGTGTTATCTTGG
1 TC-ATCTTTATT-TTTTGACTTATGGTGTTATCTTGG
* * *** * ***
16867953 TCATTTTTATTTTTTGACCTACATTGTTGTCTCAA
1 TCATCTTTATTTTTTGACTTATGGTGTTATCTTGG
* *
16867988 TCATATTTATTTTTTGACTTATGGTGTCATCTTGG
1 TCATCTTTATTTTTTGACTTATGGTGTTATCTTGG
* * * * **
16868023 TCAT-TTTATTTCTTTGACCTGTGATGTTGTCTCAG
1 TCATCTTTATTT-TTTGACTTATGGTGTTATCTTGG
* * * *
16868058 TCATCTTTATTTTTTTGACTTGTAGTGTTATCCTGA
1 TCATCTTTA-TTTTTTGACTTATGGTGTTATCTTGG
* * * ***
16868094 TCATCTTTATTTTTTGATTTACGGTGTTGTCTCAA
1 TCATCTTTATTTTTTGACTTATGGTGTTATCTTGG
* * * * *
16868129 TCATATTTTATTTTTTTTAC-CATTGGTGTTGTCTTAG
1 TCAT-CTTTA-TTTTTTGACTTA-TGGTGTTATCTTGG
* * *
16868166 TCATCTTTATTTTTTTCGACCTGCAATGTTG-TA-C-TAG
1 TCATCTTTA-TTTTTT-GA-CT--TATGGTGTTATCTTGG
* ** * * *
16868203 TCATGTTTATTTTTTGACTTGCGGTATTGT-TTCGA
1 TCATCTTTATTTTTTGACTTATGGTGTTATCTT-GG
* *** * * * * *
16868238 TCATCTTTGTTTCTAAAACCTGTAGTGTTCTCTCT-A
1 TCATCTTTATTT-TTTGACTTATGGTGTTATCT-TGG
* * * * * * *
16868274 TTATTTTTATTTTGTTGA-TCTACGGTATTGTCCTGA
1 TCATCTTTATTTT-TTGACT-TATGGTGTTATCTTGG
* ** * * *
16868310 TCATTTTTATTTTTCAACTTACGTTGTTATCTCGG
1 TCATCTTTATTTTTTGACTTATGGTGTTATCTTGG
* * * * * ** *
16868345 TCATTTTTGTTTGTTTAAC-CAGTGGTGTTGTCCCGA
1 TCATCTTTATTT-TTTGACTTA-TGGTGTTATCTTGG
* ** * * *
16868381 TCATCTTTATCTTTTTGACCTATAATGTTGTCCTAG
1 TCATCTTTAT-TTTTTGACTTATGGTGTTATCTTGG
* ** * * * *
16868417 TCATTTTTATTTTTTGACTTGCGATGATGTCTTAG
1 TCATCTTTATTTTTTGACTTATGGTGTTATCTTGG
*** * *
16868452 TCATCTTTATTTCTCCAACTTGTGGTGTTATCCTGG
1 TCATCTTTATTT-TTTGACTTATGGTGTTATCTTGG
* * *
16868488 TCATTTTTATTTTTTGGGCCTATGGTGTTATGC-TGG
1 TCATCTTTATTTTTT-GACTTATGGTGTTAT-CTTGG
* * ***
16868524 TCATCTTTATTTTTTGACTTACGGTGTTGTCCCAG
1 TCATCTTTATTTTTTGACTTATGGTGTTATCTTGG
* * * *
16868559 TCATATTT-TGTTTTGTGACCGT-TGGTGTTATCTCGA
1 TCATCTTTAT-TTTT-TGA-CTTATGGTGTTATCTTGG
* * * * * * *
16868595 TCATTTTTATGTTTTCGACTTGT-ATGTTGTTTTAG
1 TCATCTTTAT-TTTTTGACTTATGGTGTTATCTTGG
* * * * *
16868630 TAATCTTTATGTTTTGACTTGTGGTGTTATCCTGA
1 TCATCTTTATTTTTTGACTTATGGTGTTATCTTGG
*
16868665 TCACCTTTATTTTTT
1 TCATCTTTATTTTTT
16868680 TTTGACTTGC
Statistics
Matches: 650, Mismatches: 214, Indels: 83
0.69 0.23 0.09
Matches are distributed among these distances:
32 2 0.00
33 1 0.00
34 23 0.04
35 265 0.41
36 299 0.46
37 51 0.08
38 3 0.00
39 1 0.00
40 4 0.01
41 1 0.00
ACGTcount: A:0.17, C:0.15, G:0.15, T:0.53
Consensus pattern (35 bp):
TCATCTTTATTTTTTGACTTATGGTGTTATCTTGG
Found at i:16868072 original size:106 final size:105
Alignment explanation
Indices: 16867843--16868222 Score: 286
Period size: 106 Copynumber: 3.6 Consensus size: 105
16867833 AGTATTATCC
* * * * * * *
16867843 CAGTCATCTTTATTTTTCTGACTTACGATGTTGTCCCAGTCATTTTTATTTTTTAACTTATAGTG
1 CAGTCATCTTTATTTTTTTGACCTAC-ATGTTGTCTCAATCATATTTATTTTTTGACTTATGGTG
* * * *
16867908 -CTATCCTGG-CTATCTTTGTTACTTTAACCTATGGTGTTATCT
65 TC-ATCTTGGTCTAT-TTTATTTCTTTAACCT-TGGTGTTGTCT
** *
16867950 TGGTCATTTTTA-TTTTTTGACCTACATTGTTGTCTCAATCATATTTATTTTTTGACTTATGGTG
1 CAGTCATCTTTATTTTTTTGACCTACA-TGTTGTCTCAATCATATTTATTTTTTGACTTATGGTG
* *
16868014 TCATCTTGGTC-ATTTTATTTCTTTGACCTGTGATGTTGTCT
65 TCATCTTGGTCTATTTTATTTCTTTAACCT-TGGTGTTGTCT
* ** * * * * *
16868055 CAGTCATCTTTATTTTTTTGACTTGTAGTGTTATC-CTGATCATCTTTATTTTTTGATTTACGGT
1 CAGTCATCTTTATTTTTTTGACCTACA-TGTTGTCTC-AATCATATTTATTTTTTGACTTATGGT
** *** * *
16868119 GTTGTCTCAATCATATTTTATTTTTTTTACCATTGGTGTTGTCT
64 GTCATCTTGGTC-TATTTTATTTCTTTAACC-TTGGTGTTGTCT
* * * *
16868163 TAGTCATCTTTATTTTTTTCGACCTGCAATGTTGTACT-AGTCATGTTTATTTTTTGACTT
1 CAGTCATCTTTATTTTTTT-GACCTAC-ATGTTGT-CTCAATCATATTTATTTTTTGACTT
16868223 GCGGTATTGT
Statistics
Matches: 216, Mismatches: 45, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
105 33 0.15
106 98 0.45
107 11 0.05
108 43 0.20
109 29 0.13
110 2 0.01
ACGTcount: A:0.17, C:0.16, G:0.14, T:0.53
Consensus pattern (105 bp):
CAGTCATCTTTATTTTTTTGACCTACATGTTGTCTCAATCATATTTATTTTTTGACTTATGGTGT
CATCTTGGTCTATTTTATTTCTTTAACCTTGGTGTTGTCT
Found at i:16868455 original size:107 final size:106
Alignment explanation
Indices: 16867523--16868649 Score: 422
Period size: 107 Copynumber: 10.5 Consensus size: 106
16867513 CATGTTATCT
* * * *
16867523 CGATCATTTTTATTTATTTGACTTATAATGTTGTCCT-GATCA-CTTTTATTTTTTAATTTACAG
1 CGATCATTTTTATTT-TTTGACCTATAATGTTGTCCTAG-TCATC-TTTATTTTTTGACTTACGG
* * * * **
16867586 TGTTGTCTCAATCATCTTTGTTTCTTTAACCTGCT-GTATTGTTT
63 TGTTGTCTCAGTCATTTTTATTTCTTTAACCTG-TGGTGTTGTCC
* * * ** * * * *** **
16867630 TGATCATTTTTATTTTTTGACTTACAATGTTGTCCCCGTTATTTTTATTTTTTAACTTGTAGTAC
1 CGATCATTTTTATTTTTTGACCTATAATGTTGTCCTAGTCATCTTTATTTTTTGACTTACGGTGT
* * * * *** * * * *
16867695 TATTTC-GATCATCTTTGTTTCCCCAACCTATCGTGTTATCT
66 TGTCTCAG-TCATTTTTATTTCTTTAACCTGTGGTGTTGTCC
* * * * * * * * * **
16867736 CAATCATCTTTATTTTTTTGACCTATAGTATTATTCT-GATCATTTTTATTTTTTTAACATGTGG
1 CGATCATTTTTA-TTTTTTGACCTATAATGTTGTCCTAG-TCATCTTTA-TTTTTTGACTTACGG
* * * * * * *
16867800 TGTTATC-CAAGCCATTTTTATTT-TTTGACTTGTAGTATTATCC
63 TGTTGTCTC-AGTCATTTTTATTTCTTTAACCTGTGGTGTTGTCC
* * ** * * * **
16867843 C-AGTCATCTTTATTTTTCTGACTTACGATGTTGTCCCAGTCATTTTTATTTTTTAACTTATAGT
1 CGA-TCATTTTTATTTTT-TGACCTATAATGTTGTCCTAGTCATCTTTATTTTTTGACTTACGGT
* * * * * * * * * *
16867907 GCTATC-CTGGCTATCTTTGTTACTTTAACCTATGGTGTTATCT
64 GTTGTCTCAGTC-ATTTTTATTTCTTTAACCTGTGGTGTTGTCC
* * * * * * *
16867950 TGGTCATTTTTATTTTTTGACCTACATTGTTGT-CTCAATCATATTTATTTTTTGACTTATGGTG
1 CGATCATTTTTATTTTTTGACCTATAATGTTGTCCT-AGTCATCTTTATTTTTTGACTTACGGTG
** ** * * *
16868014 TCATCTTGGTCA-TTTTATTTCTTTGACCTGTGATGTTGTCT
65 TTGTCTCAGTCATTTTTATTTCTTTAACCTGTGGTGTTGTCC
* * * * * *
16868055 C-AGTCATCTTTATTTTTTTGACTTGTAGTGTTATCCT-GATCATCTTTATTTTTTGATTTACGG
1 CGA-TCATTTTTA-TTTTTTGACCTATAATGTTGTCCTAG-TCATCTTTATTTTTTGACTTACGG
* * *
16868118 TGTTGTCTCAATCATATTTTATTTTTTTTACCAT-TGGTGTTGT-C
63 TGTTGTCTCAGTCAT-TTTTATTTCTTTAACC-TGTGGTGTTGTCC
** * ** * * *
16868162 TTAGTCATCTTTATTTTTTTCGACCTGCAATGTTGTACTAGTCATGTTTATTTTTTGACTTGCGG
1 CGA-TCATTTTTA-TTTTTT-GACCTATAATGTTGTCCTAGTCATCTTTATTTTTTGACTTACGG
* * * * ** * * *
16868227 TATTGTTTC-GATCATCTTTGTTTCTAAAACCTGTAGTGTTCTCT
63 TGTTGTCTCAG-TCATTTTTATTTCTTTAACCTGTGGTGTTGTCC
* * * *** * * ** *
16868271 CTATTATTTTTATTTTGTTGATCTACGGTATTGTCCT-GATCATTTTTATTTTTCAACTTACGTT
1 CGATCATTTTTATTTT-TTGACCTATAATGTTGTCCTAG-TCATCTTTATTTTTTGACTTACGGT
* * * * *
16868335 GTTATCTCGGTCATTTTTGTTTGTTTAACCAGTGGTGTTGTCC
64 GTTGTCTCAGTCATTTTTATTTCTTTAACCTGTGGTGTTGTCC
* * * *
16868378 CGATCATCTTTATCTTTTTGACCTATAATGTTGTCCTAGTCATTTTTATTTTTTGACTTGCGATG
1 CGATCATTTTTAT-TTTTTGACCTATAATGTTGTCCTAGTCATCTTTATTTTTTGACTTACGGTG
* * * ** * *
16868443 ATGTCTTAGTCATCTTTATTTCTCCAACTTGTGGTGTTATCC
65 TTGTCTCAGTCATTTTTATTTCTTTAACCTGTGGTGTTGTCC
* * * ** * * *
16868485 TGGTCATTTTTATTTTTTGGGCCTATGGTGTTATGCTGGTCATCTTTATTTTTTGACTTACGGTG
1 CGATCATTTTTATTTTTT-GACCTATAATGTTGTCCTAGTCATCTTTATTTTTTGACTTACGGTG
* * * * * *
16868550 TTGTCCCAGTCATATTTTGTTT-TGTGACC-GTTGGTGTTATCT
65 TTGTCTCAGTCAT-TTTTATTTCTTTAACCTG-TGGTGTTGTCC
* * * ** * *
16868592 CGATCATTTTTATGTTTTCGACTTGT-ATGTTGTTTTAGTAATCTTTATGTTTTGACTT
1 CGATCATTTTTAT-TTTTTGACCTATAATGTTGTCCTAGTCATCTTTATTTTTTGACTT
16868650 GTGGTGTTAT
Statistics
Matches: 761, Mismatches: 220, Indels: 79
0.72 0.21 0.07
Matches are distributed among these distances:
105 34 0.04
106 227 0.30
107 342 0.45
108 108 0.14
109 49 0.06
110 1 0.00
ACGTcount: A:0.18, C:0.16, G:0.14, T:0.53
Consensus pattern (106 bp):
CGATCATTTTTATTTTTTGACCTATAATGTTGTCCTAGTCATCTTTATTTTTTGACTTACGGTGT
TGTCTCAGTCATTTTTATTTCTTTAACCTGTGGTGTTGTCC
Found at i:16868587 original size:214 final size:214
Alignment explanation
Indices: 16868082--16868650 Score: 560
Period size: 214 Copynumber: 2.7 Consensus size: 214
16868072 TTGACTTGTA
* * * *
16868082 GTGTTATCCTGATCATCTTTATTTTTTGATTTACGGTGTTGTCTCAATCATATTTTATTTTTTTT
1 GTGTTATCCTGATCATCTTTATTTTTTGACTTACGGTGTTGTCTCAGTCATATTTT-GTTTTTTA
* ** * * *
16868147 ACCATTGGTGTTGT-CTTAGTCATCTTTATTTTTTTCGACCTGCAATGTTGTACTAGTCATGTTT
65 ACCGTTGGTGTTGTCCCGA-TCATCTTTATCTTTTT-GACCTGTAATGTTGTACTAGTCATCTTT
* * * * *
16868211 ATTTTTTGACTTGCGGTATTGTTTCGATCATCTTTGTTTCTAAAACCTGTAGTGTTCTCTCTATT
128 ATTTTTTGACTTGCGATATTGTTTAGATCATCTTTATTTCTAAAACCTGTAGTGTTATCTCTATC
*
16868276 ATTTTTATTTTGTTGATCTACG
193 ATTTTTATTTTGTTGACCTACG
* * * ** * * *
16868298 GTATTGTCCTGATCATTTTTATTTTTCAACTTACGTTGTTATCTCGGTCAT-TTTTGTTTGTTTA
1 GTGTTATCCTGATCATCTTTATTTTTTGACTTACGGTGTTGTCTCAGTCATATTTTGTTT-TTTA
* * *
16868362 ACCAG-TGGTGTTGTCCCGATCATCTTTATCTTTTTGACCTATAATGTTGTCCTAGTCATTTTTA
65 ACC-GTTGGTGTTGTCCCGATCATCTTTATCTTTTTGACCTGTAATGTTGTACTAGTCATCTTTA
** * * *
16868426 TTTTTTGACTTGCGATGA-TGTCTTAG-TCATCTTTATTTCTCCAACTTGTGGTGTTATC-CTGG
129 TTTTTTGACTTGCGAT-ATTGT-TTAGATCATCTTTATTTCTAAAACCTGTAGTGTTATCTCT-A
* *
16868488 TCATTTTTATTTT-TTGGGCCTATG
191 TCATTTTTATTTTGTT-GACCTACG
* * * * *
16868512 GTGTTATGCTGGTCATCTTTATTTTTTGACTTACGGTGTTGTCCCAGTCATATTTTGTTTTGTGA
1 GTGTTATCCTGATCATCTTTATTTTTTGACTTACGGTGTTGTCTCAGTCATATTTTGTTTTTTAA
* * * * * * ** * *
16868577 CCGTTGGTGTTATCTCGATCATTTTTATGTTTTCGACTTGT-ATGTTGTTTTAGTAATCTTTATG
66 CCGTTGGTGTTGTCCCGATCATCTTTATCTTTTTGACCTGTAATGTTGTACTAGTCATCTTTATT
16868641 TTTTGACTTG
131 TTTTGACTTG
16868651 TGGTGTTATC
Statistics
Matches: 286, Mismatches: 58, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
213 33 0.12
214 164 0.57
215 46 0.16
216 43 0.15
ACGTcount: A:0.16, C:0.15, G:0.17, T:0.52
Consensus pattern (214 bp):
GTGTTATCCTGATCATCTTTATTTTTTGACTTACGGTGTTGTCTCAGTCATATTTTGTTTTTTAA
CCGTTGGTGTTGTCCCGATCATCTTTATCTTTTTGACCTGTAATGTTGTACTAGTCATCTTTATT
TTTTGACTTGCGATATTGTTTAGATCATCTTTATTTCTAAAACCTGTAGTGTTATCTCTATCATT
TTTATTTTGTTGACCTACG
Found at i:16869065 original size:35 final size:35
Alignment explanation
Indices: 16869026--16869355 Score: 106
Period size: 35 Copynumber: 9.4 Consensus size: 35
16869016 TTTTTTTATT
16869026 ATTTTTATTTTTTGACTTGCGATGTTATCTCGATC
1 ATTTTTATTTTTTGACTTGCGATGTTATCTCGATC
* * * * *
16869061 ATTTTTATTTTTTGACTTACAATGTTGTC-CTAGCC
1 ATTTTTATTTTTTGACTTGCGATGTTATCTCGA-TC
* * * * * * * *
16869096 ATCTTTGTTTCTCTGACCTACGA--TAATGTCCAT-
1 ATTTTTATTT-TTTGACTTGCGATGTTATCTCGATC
* * * *
16869129 GTTATCTT-TTTTGATGATTTGCGATGTTGTCTCGATC
1 ATT-T-TTATTTT-TTGACTTGCGATGTTATCTCGATC
* * * * *
16869166 ATTTTTA-TTTTTCAATTAGTGGTGTTATC-CTAGTC
1 ATTTTTATTTTTTGACTT-GCGATGTTATCTCGA-TC
* * *
16869201 ATCTTTATTTTTTGAC-TGACGATGTCATCTCAATC
1 ATTTTTATTTTTTGACTTG-CGATGTTATCTCGATC
* * * *
16869236 ATTTTTGTTTTTACGACTTG-TAGTGTTATC-CTGGTC
1 ATTTTTATTTTT-TGACTTGCGA-TGTTATCTC-GATC
* * * *
16869272 ATCTTTATTTTTTGACTTGCGATGCTGTTTC-AGTC
1 ATTTTTATTTTTTGACTTGCGATGTTATCTCGA-TC
* * * * * * *
16869307 ATATTTATTTTCTAACTTGCGGTGTTGTCTTGGTC
1 ATTTTTATTTTTTGACTTGCGATGTTATCTCGATC
16869342 ATATTTTATTTTTT
1 AT-TTTTATTTTTT
16869356 CGACCGTTGG
Statistics
Matches: 206, Mismatches: 65, Indels: 47
0.65 0.20 0.15
Matches are distributed among these distances:
33 2 0.01
34 22 0.11
35 122 0.59
36 56 0.27
37 4 0.02
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.52
Consensus pattern (35 bp):
ATTTTTATTTTTTGACTTGCGATGTTATCTCGATC
Found at i:16869295 original size:71 final size:70
Alignment explanation
Indices: 16869147--16869295 Score: 194
Period size: 71 Copynumber: 2.1 Consensus size: 70
16869137 TTTTGATGAT
** * *
16869147 TTGCGATGTTGTCTCGATCATTTTTATTTTTCAATTAGTGGTGTTATCCTAGTCATCTTTATTTT
1 TTGCGATGTCATCTCAATCATTTTTATTTTTCAATTAGTAGTGTTATCCTAGTCATCTTTATTTT
16869212 TTGAC
66 TTGAC
* * *
16869217 -TGACGATGTCATCTCAATCATTTTTGTTTTTACGACTT-GTAGTGTTATCCTGGTCATCTTTAT
1 TTG-CGATGTCATCTCAATCATTTTTATTTTT-C-AATTAGTAGTGTTATCCTAGTCATCTTTAT
16869280 TTTTTGAC
63 TTTTTGAC
16869288 TTGCGATG
1 TTGCGATG
16869296 CTGTTTCAGT
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
69 2 0.03
70 24 0.35
71 37 0.54
72 5 0.07
ACGTcount: A:0.17, C:0.15, G:0.17, T:0.50
Consensus pattern (70 bp):
TTGCGATGTCATCTCAATCATTTTTATTTTTCAATTAGTAGTGTTATCCTAGTCATCTTTATTTT
TTGAC
Found at i:16869433 original size:36 final size:35
Alignment explanation
Indices: 16869344--16869462 Score: 105
Period size: 36 Copynumber: 3.3 Consensus size: 35
16869334 TCTTGGTCAT
* *
16869344 ATTTTATTTTTTCGACCGT-TGGTGTTGTTTCAATC
1 ATTTTATTTTTTCGA-CTTATGGTGTTGTCTCAATC
* *
16869379 ATTTTGATGTTTTCGACTTATGGTGTTGTCTCAATT
1 ATTTT-ATTTTTTCGACTTATGGTGTTGTCTCAATC
* ** * * *
16869415 ATCTTTATTTTTTTGACTTACAGTGTTATCCCAGTC
1 AT-TTTATTTTTTCGACTTATGGTGTTGTCTCAATC
16869451 ATTTTTATTTTT
1 A-TTTTATTTTT
16869463 GTATGTGCGG
Statistics
Matches: 68, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
35 7 0.10
36 57 0.84
37 4 0.06
ACGTcount: A:0.17, C:0.13, G:0.14, T:0.55
Consensus pattern (35 bp):
ATTTTATTTTTTCGACTTATGGTGTTGTCTCAATC
Found at i:16869691 original size:35 final size:35
Alignment explanation
Indices: 16869147--16870489 Score: 275
Period size: 35 Copynumber: 37.9 Consensus size: 35
16869137 TTTTGATGAT
* * * *
16869147 TTGCGATGTTGTCTCGATCATTTTTA-TTTTTCAA
1 TTGCGGTGTTGTCTCAATCATTTTTATTTTTTGAC
* * * *
16869181 TTAGTGGTGTTATC-CTAGTCATCTTTATTTTTTGAC
1 TT-GCGGTGTTGTCTC-AATCATTTTTATTTTTTGAC
* ** * *
16869217 -TGACGATGTCATCTCAATCATTTTTGTTTTTACGAC
1 TTG-CGGTGTTGTCTCAATCATTTTTATTTTT-TGAC
** * ** *
16869253 TTGTAGTGTTATC-CTGGTCATCTTTATTTTTTGAC
1 TTGCGGTGTTGTCTC-AATCATTTTTATTTTTTGAC
* * * * * * *
16869288 TTGCGATGCTGTTTCAGTCATATTTATTTTCTAAC
1 TTGCGGTGTTGTCTCAATCATTTTTATTTTTTGAC
***
16869323 TTGCGGTGTTGTCTTGGTCATATTTTATTTTTTCGACC
1 TTGCGGTGTTGTCTCAATCAT-TTTTATTTTTT-GA-C
* * *
16869361 GTT--GGTGTTGTTTCAATCATTTTGATGTTTTCGAC
1 -TTGCGGTGTTGTCTCAATCATTTTTAT-TTTTTGAC
** * *
16869396 TTATGGTGTTGTCTCAATTATCTTTATTTTTTTGAC
1 TTGCGGTGTTGTCTCAATCATTTTTA-TTTTTTGAC
* * * * *
16869432 TTACAGTGTTATCCCAGTCATTTTTA-TTTTTGTA-
1 TTGCGGTGTTGTCTCAATCATTTTTATTTTTTG-AC
** * * * * *
16869466 TGTGCGGTGTTGTCTTGATCATCTTTGTTTCTCTAAT
1 T-TGCGGTGTTGTCTCAATCATTTTTATTT-TTTGAC
* * ** *
16869503 TTGTGGTGTTATAC-CTGTTATTTTT-TATTTTTGAC
1 TTGCGGTGTTGT-CTCAATCATTTTTAT-TTTTTGAC
* * *
16869538 CTGTGCTGTTGTC-CTAATCATTTTTATTTTTTGAC
1 TTGCGGTGTTGTCTC-AATCATTTTTATTTTTTGAC
* * * * *
16869573 TTGTGGTGTTGTCCCAATCATTTTTGTTTCTCTAAC
1 TTGCGGTGTTGTCTCAATCATTTTTATTT-TTTGAC
* * * *
16869609 TTACGGTGTTGTCCCAATCATTTTCATTTTTTAAC
1 TTGCGGTGTTGTCTCAATCATTTTTATTTTTTGAC
* *** *
16869644 CTGTAATATTGTCTCAATCATTTTTATTTTTTGAC
1 TTGCGGTGTTGTCTCAATCATTTTTATTTTTTGAC
* ** * * ***
16869679 TTGCAGTGTTGTCTTGATCATCTTTGTTTCTCCAAC
1 TTGCGGTGTTGTCTCAATCATTTTTATTT-TTTGAC
* ** * * * ** * *
16869715 CTATGGTATTGTCTTACTTGTCTTTATTTTTTTAAC
1 TTGCGGTGTTGTCTCAATCATTTTTA-TTTTTTGAC
** * * ** *
16869751 TTATGGTATTAT-TCTGGTTATTTTTATTTTTTGAC
1 TTGCGGTGTTGTCTC-AATCATTTTTATTTTTTGAC
* * ** * * ***
16869786 TTGCGATGTTATCTCGGTCATCTTTGTTTCTCCAAC
1 TTGCGGTGTTGTCTCAATCATTTTTATTT-TTTGAC
** * * *
16869822 -TGTAGTGTTAG-CCCGATCATCTTTATTTTTTTGAC
1 TTGCGGTGTT-GTCTCAATCATTTTTA-TTTTTTGAC
* * * * * *
16869857 TTACGATGTTGTCT-AGTCATCTTTATCTTTCGAC
1 TTGCGGTGTTGTCTCAATCATTTTTATTTTTTGAC
* * *
16869891 TTGCAGTGTTATCTCAATTATATTTTATTTTTTTGAC
1 TTGCGGTGTTGTCTCAATCAT-TTTTA-TTTTTTGAC
* * * ** * *
16869928 TTGTGATGTTGTATTGATTATCTTTATTTTTTCGAC
1 TTGCGGTGTTGTCTCAATCATTTTTATTTTTT-GAC
** * * * * *
16869964 TTATGATGTTGTCCCTATCATCTTTATTTTTTGAA
1 TTGCGGTGTTGTCTCAATCATTTTTATTTTTTGAC
* * *
16869999 TTACGGTGTTATC-CTAGTCATATTTTATTTTTTCGA-
1 TTGCGGTGTTGTCTC-AATCAT-TTTTATTTTTT-GAC
* ** * * *
16870035 -T-CGTTGTTGT-TCTGGTTATCTTTATGTTTTTAAC
1 TTGCGGTGTTGTCTC-AATCATTTTTAT-TTTTTGAC
* * * * *
16870069 TTACGGTGTTGTTTCGATCATGTTTATTTTTTTTTAC
1 TTGCGGTGTTGTCTCAATCAT-TTT-TATTTTTTGAC
* * * *
16870106 CTGTGGTGTTATC-CTAGTCATTTTTATTTTTTGAC
1 TTGCGGTGTTGTCTC-AATCATTTTTATTTTTTGAC
* * * * * *
16870141 TTGTGATATTGTCTTAGTCATCTTTATTTTTTTGAC
1 TTGCGGTGTTGTCTCAATCATTTTTA-TTTTTTGAC
** * * ** * * ** *
16870177 TTGCAATGTTATATCGGTAACTTTTAGCTTTTAAC
1 TTGCGGTGTTGTCTCAATCATTTTTATTTTTTGAC
* * ** * *
16870212 ATGCAGTGTTGTCTTGACCATTTTTATTTTTTAAC
1 TTGCGGTGTTGTCTCAATCATTTTTATTTTTTGAC
* *
16870247 TTGCGATGTTATCTCAATCATCTTTT-TTTTTT-AC
1 TTGCGGTGTTGTCTCAATCAT-TTTTATTTTTTGAC
**** * *
16870281 CAATGATGTTGTCTCGATCATTTTTATTTTTTGAC
1 TTGCGGTGTTGTCTCAATCATTTTTATTTTTTGAC
** * * * * * *
16870316 TTATGATGTTGTCCCGATCATCTTTGTTTCTCTGAC
1 TTGCGGTGTTGTCTCAATCATTTTTATTT-TTTGAC
* * ***
16870352 TTGCGATGTTATCTTGGTCATTTTTATTTTTTGAC
1 TTGCGGTGTTGTCTCAATCATTTTTATTTTTTGAC
* ** * * *
16870387 CTATGGTGTTGTCCCGATCATTTCTATTTTTTGAC
1 TTGCGGTGTTGTCTCAATCATTTTTATTTTTTGAC
* * * * * *
16870422 TTGCTGTGTTGTCCCAATCATCTTTGTTTCTCTAAC
1 TTGCGGTGTTGTCTCAATCATTTTTATTT-TTTGAC
** * * *
16870458 TTATGGTGTTTTCTCAGTCATATTTATTTTTT
1 TTGCGGTGTTGTCTCAATCATTTTTATTTTTT
16870490 CAACCTGTAG
Statistics
Matches: 946, Mismatches: 303, Indels: 119
0.69 0.22 0.09
Matches are distributed among these distances:
33 10 0.01
34 74 0.08
35 446 0.47
36 337 0.36
37 74 0.08
38 3 0.00
39 2 0.00
ACGTcount: A:0.17, C:0.15, G:0.15, T:0.53
Consensus pattern (35 bp):
TTGCGGTGTTGTCTCAATCATTTTTATTTTTTGAC
Found at i:16869727 original size:106 final size:106
Alignment explanation
Indices: 16869449--16869822 Score: 297
Period size: 106 Copynumber: 3.5 Consensus size: 106
16869439 GTTATCCCAG
* *
16869449 TCATTTTTA-TTTTTGTA-TGTGCGGTGTTGTCTTGATCATCTTTGTTTCTCTAATTTGTGGTGT
1 TCATTTTTATTTTTTG-ACT-TGCGGTGTTGTCTTGATCATCTTTGTTTCTCTAACTTATGGTGT
* * ** * * * ** *
16869512 TATACCTGTTATTTTTTATTTTTGACCTGTGCTGTTGTCCTAA
64 TGTCCCAATCATTTTATATTTTTAACCTGTAATATTGTCCTAA
* *** * *
16869555 TCATTTTTATTTTTTGACTTGTGGTGTTGTCCCAATCATTTTTGTTTCTCTAACTTACGGTGTTG
1 TCATTTTTATTTTTTGACTTGCGGTGTTGTCTTGATCATCTTTGTTTCTCTAACTTATGGTGTTG
16869620 TCCCAATCATTTTCAT-TTTTTAACCTGTAATATTGT-CTCAA
66 TCCCAATCATTTT-ATATTTTTAACCTGTAATATTGTCCT-AA
* * * *
16869661 TCATTTTTATTTTTTGACTTGCAGTGTTGTCTTGATCATCTTTGTTTCTCCAACCTATGGTATTG
1 TCATTTTTATTTTTTGACTTGCGGTGTTGTCTTGATCATCTTTGTTTCTCTAACTTATGGTGTTG
** * ** * * * ** * * **
16869726 TCTTACTTGTCTTTATTTTTTTAACTTATGGTATTATTCTGG
66 TCCCAATCAT-TTTATATTTTTAACCTGTAATATTGTCCTAA
* * * * * *
16869768 TTATTTTTATTTTTTGACTTGCGATGTTATCTCGGTCATCTTTGTTTCTCCAACT
1 TCATTTTTATTTTTTGACTTGCGGTGTTGTCTTGATCATCTTTGTTTCTCTAACT
16869823 GTAGTGTTAG
Statistics
Matches: 214, Mismatches: 47, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
105 2 0.01
106 136 0.64
107 74 0.35
108 2 0.01
ACGTcount: A:0.16, C:0.16, G:0.14, T:0.54
Consensus pattern (106 bp):
TCATTTTTATTTTTTGACTTGCGGTGTTGTCTTGATCATCTTTGTTTCTCTAACTTATGGTGTTG
TCCCAATCATTTTATATTTTTAACCTGTAATATTGTCCTAA
Found at i:16870028 original size:108 final size:105
Alignment explanation
Indices: 16869840--16870178 Score: 309
Period size: 108 Copynumber: 3.2 Consensus size: 105
16869830 TAGCCCGATC
* * * * *
16869840 ATCTTTATTTTTTTGACTTACGATGTTGTCTAGTCATCTTTATCTTTCGACTTGCAGTGTTAT-C
1 ATCTTTATTTTTTTGACTTACGATGTTGTCTA-TCATCTTTATTTTTTGAATTACGGTGTTATCC
* *
16869904 TCAATTATATTTTATTTTTTTGACTTGTGATGTTGTATTGATT
65 T-AGTCATATTTTATTTTTTTGACTTGTGATGTTGT-TTGATT
* *
16869947 ATCTTTATTTTTTCGACTTATGATGTTGTCCCTATCATCTTTATTTTTTGAATTACGGTGTTATC
1 ATCTTTATTTTTTTGACTTACGATGTTGT--CTATCATCTTTATTTTTTGAATTACGGTGTTATC
* * *
16870012 CTAGTCATATTTTATTTTTTCGA-TCGT--TGTTGTTCTGGTT
64 CTAGTCATATTTTATTTTTTTGACTTGTGATGTTGTT-TGATT
* * * * * *
16870052 ATCTTTATGTTTTTAACTTACGGTGTTGTTTCGATCATGTTTATTTTTT--TTTACCTGTGGTGT
1 ATCTTTATTTTTTTGACTTACGATGTTG--TCTATCATCTTTATTTTTTGAATTA-C---GGTGT
* *
16870115 TATCCTAGTCAT-TTTTA-TTTTTTGACTTGTGATATTGTCTT-AGTC
60 TATCCTAGTCATATTTTATTTTTTTGACTTGTGATGTTGT-TTGA-TT
16870160 ATCTTTATTTTTTTGACTT
1 ATCTTTATTTTTTTGACTT
16870179 GCAATGTTAT
Statistics
Matches: 190, Mismatches: 27, Indels: 29
0.77 0.11 0.12
Matches are distributed among these distances:
103 3 0.02
104 2 0.01
105 56 0.29
106 8 0.04
107 48 0.25
108 67 0.35
109 6 0.03
ACGTcount: A:0.17, C:0.13, G:0.14, T:0.56
Consensus pattern (105 bp):
ATCTTTATTTTTTTGACTTACGATGTTGTCTATCATCTTTATTTTTTGAATTACGGTGTTATCCT
AGTCATATTTTATTTTTTTGACTTGTGATGTTGTTTGATT
Found at i:16870179 original size:36 final size:36
Alignment explanation
Indices: 16869838--16871203 Score: 218
Period size: 36 Copynumber: 38.4 Consensus size: 36
16869828 GTTAGCCCGA
**
16869838 TCATCTTTATTTTTTTGACTTACGATGTTGTC-TAG
1 TCATCTTTATTTTTTTGACTTGTGATGTTGTCTTAG
* * * * * *
16869873 TCATCTTTA-TCTTTCGACTTG-CAGTGTTATCTCAA
1 TCATCTTTATTTTTTTGACTTGTGA-TGTTGTCTTAG
* * *
16869908 TTATATTTTATTTTTTTGACTTGTGATGTTGTATT-G
1 TCAT-CTTTATTTTTTTGACTTGTGATGTTGTCTTAG
* * * *
16869944 ATTATCTTTATTTTTTCGACTTATGATGTTGTCCCTA-
1 -TCATCTTTATTTTTTTGACTTGTGATGTTGT-CTTAG
* ** * * *
16869981 TCATCTTTA-TTTTTTGAATTACGGTGTTATCCTAG
1 TCATCTTTATTTTTTTGACTTGTGATGTTGTCTTAG
* * * *
16870016 TCATATTTTATTTTTTCGA-TCGT--TGTTGT-TCTGG
1 TCAT-CTTTATTTTTTTGACTTGTGATGTTGTCT-TAG
* * * ** * *
16870050 TTATCTTTATGTTTTTAACTTACGGTGTTGT-TTCG
1 TCATCTTTATTTTTTTGACTTGTGATGTTGTCTTAG
* * * * * *
16870085 ATCATGTTTATTTTTTTTTACCTGTGGTGTTATCCTAG
1 -TCATCTTTA-TTTTTTTGACTTGTGATGTTGTCTTAG
* *
16870123 TCATTTTTA-TTTTTTGACTTGTGATATTGTCTTAG
1 TCATCTTTATTTTTTTGACTTGTGATGTTGTCTTAG
** * * **
16870158 TCATCTTTATTTTTTTGACTTGCAATGTTATATCGG
1 TCATCTTTATTTTTTTGACTTGTGATGTTGTCTTAG
* ** * * *
16870194 T-AACTTT-TAGCTTTTAACATG-CAGTGTTGTCTT-G
1 TCATCTTTAT-TTTTTTGACTTGTGA-TGTTGTCTTAG
* * * * * * *
16870228 ACCATTTTTA-TTTTTTAACTTGCGATGTTATCTCAA
1 -TCATCTTTATTTTTTTGACTTGTGATGTTGTCTTAG
*** *
16870264 TCATCTTT-TTTTTTT-ACCAATGATGTTGTC-TCG
1 TCATCTTTATTTTTTTGACTTGTGATGTTGTCTTAG
* * **
16870297 ATCATTTTTA-TTTTTTGACTTATGATGTTGTC-CCG
1 -TCATCTTTATTTTTTTGACTTGTGATGTTGTCTTAG
* * * * * *
16870332 ATCATCTTTGTTTCTCTGACTTGCGATGTTATCTTGG
1 -TCATCTTTATTTTTTTGACTTGTGATGTTGTCTTAG
* * * * **
16870369 TCATTTTTA-TTTTTTGACCTATGGTGTTGTC-CCG
1 TCATCTTTATTTTTTTGACTTGTGATGTTGTCTTAG
** *
16870403 ATCAT-TTCTA-TTTTTTGACTTGCTG-TGTTGTCCCAA
1 -TCATCTT-TATTTTTTTGACTTG-TGATGTTGTCTTAG
* * * * * * * *
16870439 TCATCTTTGTTTCTCTAACTTATGGTGTTTTCTCAG
1 TCATCTTTATTTTTTTGACTTGTGATGTTGTCTTAG
* ** * * *
16870475 TCATATTTATTTTTTCAACCTGT-AGTGTTGTTTTAA
1 TCATCTTTATTTTTTTGACTTGTGA-TGTTGTCTTAG
* *** *** * * * *
16870511 TCATATTTTATTTTCACGACCACTGGTGTTATCTCAA
1 TCAT-CTTTATTTTTTTGACTTGTGATGTTGTCTTAG
* * *
16870548 TCATCTTTATGTTTTTT-ACTTATGATGTTGTCCTGG
1 TCATCTTTAT-TTTTTTGACTTGTGATGTTGTCTTAG
* * * *
16870584 TTATCTTTATTTTTTTGACCTGTGATGTTAT-TTCG
1 TCATCTTTATTTTTTTGACTTGTGATGTTGTCTTAG
* * * * * * *
16870619 ATTATTTTTA-TGTTTTGACTTATGGTGGTGTCTTGG
1 -TCATCTTTATTTTTTTGACTTGTGATGTTGTCTTAG
** * ** ** *
16870655 TCAT-TTT-TTATTCTTCAAATTACGATGTTGTCCCAA
1 TCATCTTTATT-TT-TTTGACTTGTGATGTTGTCTTAG
* * *** * * *
16870691 TCATATTTATTTTTTTGACCTACAATGTGGTCCTAA
1 TCATCTTTATTTTTTTGACTTGTGATGTTGTCTTAG
* * ** * ** * * *
16870727 TCATCTTTGTTTCTCCGACCTACGGTATTGTCTTGG
1 TCATCTTTATTTTTTTGACTTGTGATGTTGTCTTAG
* * * * * *
16870763 TCATCTTTATTCTTTTGACCTGCGGTGTCGTCCTAG
1 TCATCTTTATTTTTTTGACTTGTGATGTTGTCTTAG
* * * * * * *
16870799 TAAT-TTT-TATTTTTGACTTACT-TTGGTGTCCTGG
1 TCATCTTTATTTTTTTGACTT-GTGATGTTGTCTTAG
* * *
16870833 TCATCCTTGTTTCTTTGATCTATG-G-TGTTGT-TCTAG
1 TCATCTTTATTTTTTTGA-CT-TGTGATGTTGTCT-TAG
* * **
16870869 TCATCTTTAATTTTTTT-ACTTGTGGTGTTATCTCGG
1 TCATCTTT-ATTTTTTTGACTTGTGATGTTGTCTTAG
** * *
16870905 TCATCTTTATTTTTTT-ACTTACGATGTTATCTCAG
1 TCATCTTTATTTTTTTGACTTGTGATGTTGTCTTAG
* * * * * *
16870940 TAATCTTTATTTTTTCGACTGGTGGTGTTATCTCAG
1 TCATCTTTATTTTTTTGACTTGTGATGTTGTCTTAG
* * * * ** *
16870976 TAATCTTTATTTTTTCGACTGGTGGTGTTGTCCCAA
1 TCATCTTTATTTTTTTGACTTGTGATGTTGTCTTAG
* * ** * * *
16871012 TCATCTTTATTTTTTCGACATGCAATATTATC-TCG
1 TCATCTTTATTTTTTTGACTTGTGATGTTGTCTTAG
* *
16871047 ATCATCTTTA-TTTTCTGACTTGT-AGTGTTATCCTT-G
1 -TCATCTTTATTTTTTTGACTTGTGA-TGTTGT-CTTAG
* * * ** * *
16871083 TCATATTTGTTTTCTCAATCATTG-G-TGTTGTCATGG
1 TCATCTTTATTTTTTTGA-C-TTGTGATGTTGTCTTAG
* *
16871119 TCATCTTTA-TTTTTTGACCTGTGATATTGTCTTAG
1 TCATCTTTATTTTTTTGACTTGTGATGTTGTCTTAG
* * * * * * *
16871154 TCATATTTATTTTTTAGACCTGCGGTGTTATCTTAA
1 TCATCTTTATTTTTTTGACTTGTGATGTTGTCTTAG
*
16871190 TCATTTTTATTTTT
1 TCATCTTTATTTTT
16871204 CAACCTATGG
Statistics
Matches: 954, Mismatches: 302, Indels: 149
0.68 0.21 0.11
Matches are distributed among these distances:
33 13 0.01
34 88 0.09
35 294 0.31
36 453 0.47
37 97 0.10
38 9 0.01
ACGTcount: A:0.17, C:0.15, G:0.15, T:0.53
Consensus pattern (36 bp):
TCATCTTTATTTTTTTGACTTGTGATGTTGTCTTAG
Found at i:16870398 original size:175 final size:172
Alignment explanation
Indices: 16869931--16870446 Score: 432
Period size: 175 Copynumber: 2.9 Consensus size: 172
16869921 TTTTGACTTG
* * * *
16869931 TGATGTTGTATTGATTATCTTTATTTTTTCGACTTATGATGTTGTCCCTATCATCTTTATTTTTT
1 TGATGTTGTCTCGATCATTTTTATTTTTT-GACTTATGATGTTGTCCCTATCATCTTTATTTTTT
* * * * * * * * * *
16869996 GAATTACGGTGTTATCCTAGTCATATTTTATTTTTTCGA-T-CGTTGTTGT-TCTGGTTATCTTT
65 GACTTGCGATGTTATCTTGGTCAT-TTTTATTTTTT-GACTATGGTGTTGTCT-TGATCATTTTT
* * * * **
16870058 ATGTTTTTAACTTACGGTGTTGTTTCGATCATGTTTATTTTTTTTTACCTG
127 AT-TTTTTAACTTGC-GTGTTGTCTCAATCA--TCT-TTTTTTTTTACCAA
* * * * * *
16870109 TGGTGTTATC-CTAGTCATTTTTATTTTTTGACTTGTGATATTGT-CTTAGTCATCTTTATTTTT
1 TGATGTTGTCTCGA-TCATTTTTATTTTTTGACTTATGATGTTGTCCCTA-TCATCTTTA-TTTT
* * * * * ** * *
16870172 TTGACTTGCAATGTTATATCGGTAACTTTTAGCTTTTAAC-ATGCAGTGTTGTCTTGACCATTTT
63 TTGACTTGCGATGTTATCTTGGTCATTTTTATTTTTTGACTATG--GTGTTGTCTTGATCATTTT
*
16870236 TATTTTTTAACTTGCGATGTTATCTCAATCATCTTTTTTTTTTACCAA
126 TATTTTTTAACTTGCG-TGTTGTCTCAATCATCTTTTTTTTTTACCAA
* * *
16870284 TGATGTTGTCTCGATCATTTTTATTTTTTGACTTATGATGTTGTCCCGATCATCTTTGTTTCTCT
1 TGATGTTGTCTCGATCATTTTTATTTTTTGACTTATGATGTTGTCCCTATCATCTTTATTT-TTT
** *
16870349 GACTTGCGATGTTATCTTGGTCATTTTTATTTTTTGACCTATGGTGTTGTCCCGATCATTTCTAT
65 GACTTGCGATGTTATCTTGGTCATTTTTATTTTTTGA-CTATGGTGTTGTCTTGATCATTTTTAT
* *
16870414 TTTTTGACTTGCTGTGTTGTCCCAATCATCTTT
129 TTTTTAACTTGC-GTGTTGTCTCAATCATCTTT
16870447 GTTTCTCTAA
Statistics
Matches: 263, Mismatches: 60, Indels: 33
0.74 0.17 0.09
Matches are distributed among these distances:
174 3 0.01
175 133 0.51
176 12 0.05
177 37 0.14
178 62 0.24
179 15 0.06
180 1 0.00
ACGTcount: A:0.17, C:0.15, G:0.15, T:0.53
Consensus pattern (172 bp):
TGATGTTGTCTCGATCATTTTTATTTTTTGACTTATGATGTTGTCCCTATCATCTTTATTTTTTG
ACTTGCGATGTTATCTTGGTCATTTTTATTTTTTGACTATGGTGTTGTCTTGATCATTTTTATTT
TTTAACTTGCGTGTTGTCTCAATCATCTTTTTTTTTTACCAA
Found at i:16870478 original size:106 final size:105
Alignment explanation
Indices: 16870243--16870489 Score: 309
Period size: 106 Copynumber: 2.3 Consensus size: 105
16870233 TTTTATTTTT
* * * *
16870243 TAACTTGCGATGTTATCTCAATCATCTTTT-TTTTTTACCAATGATGTTGTCTCGATCATTTTTA
1 TAACTTACGATGTTATCTCAGTCAT-TTTTATTTTTTACCAATGATGTTGTCCCGATCATTTCTA
*
16870307 TTTTTTGACTTATGATGTTGTCCCGATCATCTTTGTTTCTC
65 TTTTTTGACTTATGATGTTGTCCCAATCATCTTTGTTTCTC
* * ** * *
16870348 TGACTTGCGATGTTATCTTGGTCATTTTTATTTTTTGACCTATGGTGTTGTCCCGATCATTTCTA
1 TAACTTACGATGTTATCTCAGTCATTTTTATTTTTT-ACCAATGATGTTGTCCCGATCATTTCTA
*
16870413 TTTTTTGACTTGCTG-TGTTGTCCCAATCATCTTTGTTTCTC
65 TTTTTTGACTT-ATGATGTTGTCCCAATCATCTTTGTTTCTC
* * * *
16870454 TAACTTATGGTGTTTTCTCAGTCATATTTATTTTTT
1 TAACTTACGATGTTATCTCAGTCATTTTTATTTTTT
16870490 CAACCTGTAG
Statistics
Matches: 121, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
104 4 0.03
105 27 0.22
106 88 0.73
107 2 0.02
ACGTcount: A:0.16, C:0.17, G:0.14, T:0.52
Consensus pattern (105 bp):
TAACTTACGATGTTATCTCAGTCATTTTTATTTTTTACCAATGATGTTGTCCCGATCATTTCTAT
TTTTTGACTTATGATGTTGTCCCAATCATCTTTGTTTCTC
Found at i:16871025 original size:71 final size:71
Alignment explanation
Indices: 16870846--16871030 Score: 194
Period size: 71 Copynumber: 2.6 Consensus size: 71
16870836 TCCTTGTTTC
* * * * * *
16870846 TTTGATCT-ATGGTGTTGTTCTAGTCATCTTTAATTTTTT-TACTTGTGGTGTTATCTCGGTCAT
1 TTTGA-CTGATGGTGTTGTCCCAGTCATCTTT-ATTTTTTCGACTGGTGGTGTTATCTCAGTAAT
16870909 CTTTATTT
64 CTTTATTT
* * * * * * *
16870917 TTTTACTTACGATGTTATCTCAGTAATCTTTATTTTTTCGACTGGTGGTGTTATCTCAGTAATCT
1 TTTGACTGATGGTGTTGTCCCAGTCATCTTTATTTTTTCGACTGGTGGTGTTATCTCAGTAATCT
16870982 TTATTT
66 TTATTT
* *
16870988 TTTCGACTGGTGGTGTTGTCCCAATCATCTTTATTTTTTCGAC
1 TTT-GACTGATGGTGTTGTCCCAGTCATCTTTATTTTTTCGAC
16871031 ATGCAATATT
Statistics
Matches: 90, Mismatches: 21, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
70 9 0.10
71 51 0.57
72 30 0.33
ACGTcount: A:0.16, C:0.15, G:0.16, T:0.52
Consensus pattern (71 bp):
TTTGACTGATGGTGTTGTCCCAGTCATCTTTATTTTTTCGACTGGTGGTGTTATCTCAGTAATCT
TTATTT
Found at i:16871157 original size:35 final size:35
Alignment explanation
Indices: 16871118--16871311 Score: 123
Period size: 35 Copynumber: 5.6 Consensus size: 35
16871108 TGTTGTCATG
*
16871118 GTCATCTTTATTTTTTGACCTGTGATATTGTCTTA
1 GTCATATTTATTTTTTGACCTGTGATATTGTCTTA
* * * *
16871153 GTCATATTTATTTTTTAGACCTGCGGTGTTATCTTA
1 GTCATATTTATTTTTT-GACCTGTGATATTGTCTTA
* * ** * *
16871189 ATCATTTTTATTTTTCAACCTATGGTGATA-T-CCTGA
1 GTCATATTTATTTTTTGACC--T-GTGATATTGTCTTA
* * ** *
16871225 -TCATGTTTATTTTTTAACCT-ACATGTTG--TT-
1 GTCATATTTATTTTTTGACCTGTGATATTGTCTTA
* * *
16871255 GTCATCTTTATTTTTTGACCTGTGGTATTGTTTTA
1 GTCATATTTATTTTTTGACCTGTGATATTGTCTTA
16871290 GTCATATTTATTTTTTAGACCT
1 GTCATATTTATTTTTT-GACCT
16871312 ACGGTGTTGT
Statistics
Matches: 120, Mismatches: 27, Indels: 23
0.71 0.16 0.14
Matches are distributed among these distances:
31 21 0.17
32 5 0.04
33 1 0.01
34 2 0.02
35 50 0.42
36 36 0.30
37 2 0.02
38 3 0.03
ACGTcount: A:0.20, C:0.14, G:0.13, T:0.53
Consensus pattern (35 bp):
GTCATATTTATTTTTTGACCTGTGATATTGTCTTA
Found at i:16871181 original size:71 final size:69
Alignment explanation
Indices: 16871106--16871322 Score: 221
Period size: 71 Copynumber: 3.1 Consensus size: 69
16871096 CTCAATCATT
16871106 GGTGTTGTCATGGTCATCTTTATTTTTTGACCTGTGATATTGTCTTAGTCATATTTATTTTTTAG
1 GGTGTTGTC-T-GTCATCTTTATTTTTTGACCTGTGATATTGTCTTAGTCATATTTATTTTTTAG
*
16871171 ACCTGC
64 ACCTAC
* * * ** * * *
16871177 GGTGTTATCTTAATCATTTTTATTTTTCAACCTATGGTGATA-T-CCTGA-TCATGTTTATTTTT
1 GGTGTTGTC-T-GTCATCTTTATTTTTTGACC--T-GTGATATTGTCTTAGTCATATTTATTTTT
16871239 TA-ACCTAC
61 TAGACCTAC
* * *
16871247 -ATGTTGT-TGTCATCTTTATTTTTTGACCTGTGGTATTGTTTTAGTCATATTTATTTTTTAGAC
1 GGTGTTGTCTGTCATCTTTATTTTTTGACCTGTGATATTGTCTTAGTCATATTTATTTTTTAGAC
16871310 CTAC
66 CTAC
16871314 GGTGTTGTC
1 GGTGTTGTC
16871323 CTAATCATTT
Statistics
Matches: 114, Mismatches: 23, Indels: 20
0.73 0.15 0.13
Matches are distributed among these distances:
63 5 0.04
64 2 0.02
65 2 0.02
66 31 0.27
67 7 0.06
68 6 0.05
69 5 0.04
70 5 0.04
71 40 0.35
72 3 0.03
73 2 0.02
74 6 0.05
ACGTcount: A:0.18, C:0.14, G:0.16, T:0.52
Consensus pattern (69 bp):
GGTGTTGTCTGTCATCTTTATTTTTTGACCTGTGATATTGTCTTAGTCATATTTATTTTTTAGAC
CTAC
Found at i:16871291 original size:137 final size:138
Alignment explanation
Indices: 16871118--16871391 Score: 478
Period size: 137 Copynumber: 2.0 Consensus size: 138
16871108 TGTTGTCATG
*
16871118 GTCATCTTTATTTTTTGACCTGTGATATTGTCTTAGTCATATTTATTTTTTAGACCTGCGGTGTT
1 GTCATCTTTATTTTTTGACCTGTGATATTGTCTTAGTCATATTTATTTTTTAGACCTACGGTGTT
* * *
16871183 ATCTTAATCATTTTTATTTTTCAACCTATGGTGATATCCTGATCATGTTTA-TTTTTTAACCTAC
66 ATCCTAATCATTTATATTTTTCAACCTATGGTGATATCCTGATCATATTTATTTTTTTAACCTAC
16871247 ATGTTGTT
131 ATGTTGTT
* *
16871255 GTCATCTTTATTTTTTGACCTGTGGTATTGTTTTAGTCATATTTATTTTTTAGACCTACGGTGTT
1 GTCATCTTTATTTTTTGACCTGTGATATTGTCTTAGTCATATTTATTTTTTAGACCTACGGTGTT
*
16871320 GTCCTAATCATTTATATTTTTCAACCTATGGTGATATCCTGATCATATTTATTTTTTTAACCTAC
66 ATCCTAATCATTTATATTTTTCAACCTATGGTGATATCCTGATCATATTTATTTTTTTAACCTAC
16871385 ATGTTGT
131 ATGTTGT
16871392 CTCGGTCATA
Statistics
Matches: 129, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
137 109 0.84
138 20 0.16
ACGTcount: A:0.21, C:0.15, G:0.13, T:0.51
Consensus pattern (138 bp):
GTCATCTTTATTTTTTGACCTGTGATATTGTCTTAGTCATATTTATTTTTTAGACCTACGGTGTT
ATCCTAATCATTTATATTTTTCAACCTATGGTGATATCCTGATCATATTTATTTTTTTAACCTAC
ATGTTGTT
Found at i:16871305 original size:102 final size:102
Alignment explanation
Indices: 16871153--16871347 Score: 234
Period size: 102 Copynumber: 1.9 Consensus size: 102
16871143 TATTGTCTTA
* * *
16871153 GTCATATTTATTTTTTAGACCTGCGGTGTTATCTTAATCATTTTTATTTTTCA-ACCTATGGTGA
1 GTCATATTTATTTTTTAGACCTGCGGTATTATCTTAATCATATTTATTTTT-AGACCTACGGTGA
* *
16871217 TATCCTGATCATGTT-TATTTTTTAACCTACATGTTGTT
65 TATCCTAATCAT-TTATATTTTTCAACCTACATGTTGTT
* * * * * *
16871255 GTCATCTTTATTTTTT-GACCTGTGGTATTGTTTTAGTCATATTTATTTTTTAGACCTACGGTGT
1 GTCATATTTATTTTTTAGACCTGCGGTATTATCTTAATCATATTTA-TTTTTAGACCTACGGTGA
*
16871319 TGTCCTAATCATTTATATTTTTCAACCTA
65 TATCCTAATCATTTATATTTTTCAACCTA
16871348 TGGTGATATC
Statistics
Matches: 78, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
101 26 0.33
102 52 0.67
ACGTcount: A:0.21, C:0.15, G:0.13, T:0.51
Consensus pattern (102 bp):
GTCATATTTATTTTTTAGACCTGCGGTATTATCTTAATCATATTTATTTTTAGACCTACGGTGAT
ATCCTAATCATTTATATTTTTCAACCTACATGTTGTT
Found at i:16871347 original size:35 final size:34
Alignment explanation
Indices: 16871145--16871392 Score: 146
Period size: 35 Copynumber: 7.1 Consensus size: 34
16871135 ACCTGTGATA
* * *
16871145 TTGTCTTAGTCATATTTATTTTTTAGACCTGCGGTG
1 TTGTCCTAATCAT-TTTATTTTTTA-ACCTACGGTG
* * * *
16871181 TTATCTTAATCATTTTTATTTTTCAACCTATGGTG
1 TTGTCCTAATCA-TTTTATTTTTTAACCTACGGTG
* * * *
16871216 ATATCCTGATCATGTTTATTTTTTAACCTAC-ATG
1 TTGTCCTAATCAT-TTTATTTTTTAACCTACGGTG
* * ** *
16871250 TTGT--T-GTCATCTTTATTTTTTGACCTGTGGTA
1 TTGTCCTAATCAT-TTTATTTTTTAACCTACGGTG
** *
16871282 TTGTTTTAGTCATATTTATTTTTTAGACCTACGGTG
1 TTGTCCTAATCAT-TTTATTTTTTA-ACCTACGGTG
* *
16871318 TTGTCCTAATCATTTATATTTTTCAACCTATGGTG
1 TTGTCCTAATCATTT-TATTTTTTAACCTACGGTG
* * * *
16871353 ATATCCTGATCATATTTATTTTTTTAACCTAC-ATG
1 TTGTCCTAATCAT-TTTA-TTTTTTAACCTACGGTG
16871388 TTGTC
1 TTGTC
16871393 TCGGTCATAT
Statistics
Matches: 164, Mismatches: 38, Indels: 21
0.74 0.17 0.09
Matches are distributed among these distances:
31 18 0.11
32 6 0.04
34 6 0.04
35 75 0.46
36 58 0.35
37 1 0.01
ACGTcount: A:0.21, C:0.15, G:0.13, T:0.51
Consensus pattern (34 bp):
TTGTCCTAATCATTTTATTTTTTAACCTACGGTG
Found at i:16871366 original size:71 final size:69
Alignment explanation
Indices: 16871154--16871392 Score: 245
Period size: 71 Copynumber: 3.4 Consensus size: 69
16871144 ATTGTCTTAG
* * * * *
16871154 TCATATTTATTTTTTAGACCTGCGGTGTTATCTTAATCATTTTTATTTTTCAACCTATGGTGATA
1 TCATATTTATTTTTTA-ACCTAC-ATGTTGTCCTAATCATTTATATTTTTCAACCTATGGTGATA
16871219 TCCTGA
64 TCCTGA
* ** * * *
16871225 TCATGTTTATTTTTTAACCTACATGTTGTTGTCATC-TTTAT-TTTTT-GACCTGTGGT-AT-TG
1 TCATATTTATTTTTTAACCTACATGTTGTCCTAATCATTTATATTTTTCAACCTATGGTGATAT-
** *
16871285 TTTTA
65 CCTGA
*
16871290 GTCATATTTATTTTTTAGACCTACGGTGTTGTCCTAATCATTTATATTTTTCAACCTATGGTGAT
1 -TCATATTTATTTTTTA-ACCTAC-ATGTTGTCCTAATCATTTATATTTTTCAACCTATGGTGAT
16871355 ATCCTGA
63 ATCCTGA
16871362 TCATATTTATTTTTTTAACCTACATGTTGTC
1 TCATATTTA-TTTTTTAACCTACATGTTGTC
16871393 TCGGTCATAT
Statistics
Matches: 134, Mismatches: 24, Indels: 21
0.75 0.13 0.12
Matches are distributed among these distances:
64 1 0.01
65 4 0.03
66 23 0.17
67 11 0.08
68 14 0.10
69 14 0.10
70 17 0.13
71 38 0.28
72 11 0.08
73 1 0.01
ACGTcount: A:0.21, C:0.15, G:0.13, T:0.51
Consensus pattern (69 bp):
TCATATTTATTTTTTAACCTACATGTTGTCCTAATCATTTATATTTTTCAACCTATGGTGATATC
CTGA
Found at i:16871435 original size:137 final size:135
Alignment explanation
Indices: 16871118--16871443 Score: 413
Period size: 137 Copynumber: 2.4 Consensus size: 135
16871108 TGTTGTCATG
* * * * *
16871118 GTCATCTTTATTTTTTGACCTGTGATATTGTCTTAGTCATATTTATTTTTTAGACCTGCGGTGTT
1 GTCATATTTA-TTTTTGACCTATGGTATTGTGTTAGT-ATATTTATTTTTTAGACCTACGGTGTT
* * *
16871183 ATCTTAATCATTTTTATTTTTCAACCTATGGTGATATCCTGATCATGTTTATTTTTTAACCTACA
64 ATCCTAATCATTTATATTTTTCAACCTATGGTGATATCCTGATCATATTTATTTTTTAACCTACA
16871248 TGTTGTT
129 TGTTGTT
* * *
16871255 GTCATCTTTATTTTTTGACCTGTGGTATTGTTTTAGTCATATTTATTTTTTAGACCTACGGTGTT
1 GTCATATTTA-TTTTTGACCTATGGTATTGTGTTAGT-ATATTTATTTTTTAGACCTACGGTGTT
*
16871320 GTCCTAATCATTTATATTTTTCAACCTATGGTGATATCCTGATCATATTTATTTTTTTAACCTAC
64 ATCCTAATCATTTATATTTTTCAACCTATGGTGATATCCTGATCATATTTA-TTTTTTAACCTAC
16871385 ATGTTGTCT
128 ATGTTGT-T
* * *
16871394 CGGTCATATTTGA-TTTTGACC-ATGGTGTTGTGTTGGTTATTTTTATTTTT
1 --GTCATATTT-ATTTTTGACCTATGGTATTGTGTTAG-TATATTTATTTTT
16871444 CCACATGTTG
Statistics
Matches: 170, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
137 109 0.64
138 20 0.12
139 23 0.14
140 9 0.05
141 8 0.05
142 1 0.01
ACGTcount: A:0.20, C:0.14, G:0.14, T:0.52
Consensus pattern (135 bp):
GTCATATTTATTTTTGACCTATGGTATTGTGTTAGTATATTTATTTTTTAGACCTACGGTGTTAT
CCTAATCATTTATATTTTTCAACCTATGGTGATATCCTGATCATATTTATTTTTTAACCTACATG
TTGTT
Found at i:16871524 original size:21 final size:21
Alignment explanation
Indices: 16871489--16871544 Score: 67
Period size: 21 Copynumber: 2.4 Consensus size: 21
16871479 CAAAAAAAAA
16871489 AAAAACAAAACAAAACAAAGTAAAGC
1 AAAAA-AAAA-AAAAC-AA-TAAA-C
16871515 AAAAAAAAAAAAACAATAAAC
1 AAAAAAAAAAAAACAATAAAC
16871536 AAAAAAAAA
1 AAAAAAAAA
16871545 GGTGGATGGC
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
21 10 0.33
22 4 0.13
23 2 0.07
24 5 0.17
25 4 0.13
26 5 0.17
ACGTcount: A:0.82, C:0.11, G:0.04, T:0.04
Consensus pattern (21 bp):
AAAAAAAAAAAAACAATAAAC
Found at i:16872311 original size:144 final size:144
Alignment explanation
Indices: 16872059--16872421 Score: 354
Period size: 144 Copynumber: 2.5 Consensus size: 144
16872049 AATATTTTTG
** * * * * *
16872059 TAATTTGACCTTTTCAAGTTCGGATTTTCATGAAACTTTCTAGATCTCAATTTCATAATACTTCA
1 TAATTTGACCTTTTTGAGCTCAGATTTTCATGAAACTTTTTAGATCTCAATTTTATAATATTTCA
* ** * * ** ***
16872124 TGATTTTTGACGCATTTGAAATTGTAGCAATATCTTGGGAGGTGTAAAATTTTGACAATAACCCT
66 TGATTTTTGACACATTTGAAATCATAGCAATACCCTGAAAGGTGTAAAATTACCACAAT-ACCCT
*
16872189 TTAAG-GTATTTTTA
130 TTAAGAGTATTTTCA
* * * *
16872203 TTATTTG-GCTTTCTTGAGCTCATATTTTCATGAAACTTTTTAGATCTTAATTTTATAATATTTC
1 TAATTTGACCTTT-TTGAGCTCAGATTTTCATGAAACTTTTTAGATCTCAATTTTATAATATTTC
** * * * *
16872267 ATGATTTTTGTTACATTTGAAATCATAGTAGTACCCCT-AAAGGTGTGAAATTACCACAATACCT
65 ATGATTTTTGACACATTTGAAATCATAGCAATA-CCCTGAAAGGTGTAAAATTACCACAATACCC
*
16872331 TTTAGGAGTATTTTCA
129 TTTAAGAGTATTTTCA
* ** * * *
16872347 TAATTTGACCTTTTTGAGCTTAGATTTTCACAAAAATTTTCAAATCTCAATTTTATAATATTTCA
1 TAATTTGACCTTTTTGAGCTCAGATTTTCATGAAACTTTTTAGATCTCAATTTTATAATATTTCA
*
16872412 TAATTTTTGA
66 TGATTTTTGA
16872422 TGCTTTAAAA
Statistics
Matches: 174, Mismatches: 41, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
143 12 0.07
144 156 0.90
145 6 0.03
ACGTcount: A:0.30, C:0.13, G:0.12, T:0.44
Consensus pattern (144 bp):
TAATTTGACCTTTTTGAGCTCAGATTTTCATGAAACTTTTTAGATCTCAATTTTATAATATTTCA
TGATTTTTGACACATTTGAAATCATAGCAATACCCTGAAAGGTGTAAAATTACCACAATACCCTT
TAAGAGTATTTTCA
Found at i:16872781 original size:21 final size:20
Alignment explanation
Indices: 16872757--16872795 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
16872747 AGCTCATGAA
* *
16872757 AAGAGGAAAGGAAGAAAAATC
1 AAGAAGAAAAGAA-AAAAATC
16872778 AAGAAGAAAAGAAAAAAA
1 AAGAAGAAAAGAAAAAAA
16872796 GTTGTGAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.72, C:0.03, G:0.23, T:0.03
Consensus pattern (20 bp):
AAGAAGAAAAGAAAAAAATC
Found at i:16872842 original size:11 final size:12
Alignment explanation
Indices: 16872823--16872853 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
16872813 GTATGTAAAA
16872823 TTCTTTTTCCTT
1 TTCTTTTTCCTT
16872835 TT-TTTTTCCTT
1 TTCTTTTTCCTT
16872846 TTCTTTTT
1 TTCTTTTT
16872854 TCCATTCCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (12 bp):
TTCTTTTTCCTT
Found at i:16873266 original size:3 final size:3
Alignment explanation
Indices: 16873258--16873300 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
16873248 AGGTCACTGT
16873258 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
16873301 CATCATCATC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:16873305 original size:3 final size:3
Alignment explanation
Indices: 16873299--16873355 Score: 105
Period size: 3 Copynumber: 19.0 Consensus size: 3
16873289 TATTATTATT
*
16873299 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATT ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
16873347 ATC ATC ATC
1 ATC ATC ATC
16873356 GTCGTTGTCG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.33, C:0.32, G:0.00, T:0.35
Consensus pattern (3 bp):
ATC
Found at i:16873562 original size:45 final size:45
Alignment explanation
Indices: 16873498--16873587 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
16873488 CATGCTTGAT
* *
16873498 AGAATCCAATCCCAGGATTCAAGCTTGGATTGGTT-CTGTTCGAGC
1 AGAATCCAATCCCAAGATTCAACCTTGGATTGGTTAC-GTTCGAGC
16873543 AGAATCCAATCCCAAGATTCAACCTTGGATTGGTTACGTTCGAGC
1 AGAATCCAATCCCAAGATTCAACCTTGGATTGGTTACGTTCGAGC
16873588 CTAAAATTTC
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
45 41 0.98
46 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (45 bp):
AGAATCCAATCCCAAGATTCAACCTTGGATTGGTTACGTTCGAGC
Found at i:16873796 original size:20 final size:21
Alignment explanation
Indices: 16873739--16873796 Score: 84
Period size: 20 Copynumber: 2.9 Consensus size: 21
16873729 GGTATTGAGA
16873739 GTTTGAATTTCTGGG-TTAGG
1 GTTTGAATTTCTGGGTTTAGG
*
16873759 GTTTGAAGTTCTGGGTTTA-G
1 GTTTGAATTTCTGGGTTTAGG
*
16873779 GTTTCAATTTCTGGGTTT
1 GTTTGAATTTCTGGGTTT
16873797 GGAGTTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
20 31 0.91
21 3 0.09
ACGTcount: A:0.14, C:0.07, G:0.31, T:0.48
Consensus pattern (21 bp):
GTTTGAATTTCTGGGTTTAGG
Found at i:16873807 original size:20 final size:19
Alignment explanation
Indices: 16873744--16873808 Score: 58
Period size: 20 Copynumber: 3.3 Consensus size: 19
16873734 TGAGAGTTTG
* *
16873744 AATTTCTGGGTTAGGGTTTG
1 AATTTCTGGGTTTGGG-TTA
* * *
16873764 AAGTTCTGGGTTTAGGTTTC
1 AATTTCTGGGTTT-GGGTTA
16873784 AATTTCTGGGTTTGGAGTTA
1 AATTTCTGGGTTTGG-GTTA
16873804 AATTT
1 AATTT
16873809 TTGGAAACAT
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
19 2 0.06
20 32 0.89
21 2 0.06
ACGTcount: A:0.18, C:0.06, G:0.29, T:0.46
Consensus pattern (19 bp):
AATTTCTGGGTTTGGGTTA
Found at i:16885382 original size:27 final size:27
Alignment explanation
Indices: 16885328--16885383 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
16885318 TTCCCTTTTT
* * *
16885328 ATGCTTTACCATGAATAGAAGAAGTGC
1 ATGCTTTACCATGAATAAAAAAAATGC
16885355 ATGCTTTACCATGAATAAAAAAAATGC
1 ATGCTTTACCATGAATAAAAAAAATGC
16885382 AT
1 AT
16885384 AATTTGCATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (27 bp):
ATGCTTTACCATGAATAAAAAAAATGC
Found at i:16886185 original size:27 final size:27
Alignment explanation
Indices: 16886154--16886216 Score: 117
Period size: 27 Copynumber: 2.3 Consensus size: 27
16886144 TATTTTAATC
16886154 TCAGCTTGACCTAGATCATTTAAATTA
1 TCAGCTTGACCTAGATCATTTAAATTA
16886181 TCAGCTTGACCTAGATCATTTAAATTA
1 TCAGCTTGACCTAGATCATTTAAATTA
16886208 TCAGACTTG
1 TCAG-CTTG
16886217 TAGCTCAGTC
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 31 0.89
28 4 0.11
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (27 bp):
TCAGCTTGACCTAGATCATTTAAATTA
Found at i:16886385 original size:3 final size:3
Alignment explanation
Indices: 16886377--16886437 Score: 115
Period size: 3 Copynumber: 20.7 Consensus size: 3
16886367 ATCAATTGTT
16886377 TTA TTA TTA TTA TTA -TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
16886424 TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TT
16886438 TTACTTTTCT
Statistics
Matches: 57, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 2 0.04
3 55 0.96
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:16886847 original size:12 final size:11
Alignment explanation
Indices: 16886830--16886862 Score: 57
Period size: 11 Copynumber: 2.9 Consensus size: 11
16886820 GAAAATTTCT
16886830 AAAAAATATGGA
1 AAAAAAT-TGGA
16886842 AAAAAATTGGA
1 AAAAAATTGGA
16886853 AAAAAATTGG
1 AAAAAATTGG
16886863 GTTTTAGGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.67
12 7 0.33
ACGTcount: A:0.64, C:0.00, G:0.18, T:0.18
Consensus pattern (11 bp):
AAAAAATTGGA
Found at i:16890108 original size:105 final size:105
Alignment explanation
Indices: 16889987--16890193 Score: 328
Period size: 105 Copynumber: 2.0 Consensus size: 105
16889977 GGTATCATTT
**
16889987 TTTTCTTTTAATTTAACTAAAACTTAAATTGTAATTGCATTAGAATTTATAAACTATTCTCG-TT
1 TTTTCTTTTAATTTAACTAAAACTTAAATTACAATTGCATTAGAATTTATAAACTATTCTCGTTT
* * * *
16890051 TAAAAAAGTAA-AATCAATTTATATAATCATCCTTATTGGTA
66 TAAAAAA--AATAATAAATTTATACAATCAACCTCATTGGTA
16890092 TTTTCTTTTAATTTAACTAAAACTTAAATTACAATTGCATTAGAATTTATAAACTATTCTCGTTT
1 TTTTCTTTTAATTTAACTAAAACTTAAATTACAATTGCATTAGAATTTATAAACTATTCTCGTTT
16890157 TAAAAAAAATAATAAATTTATACAATCAACCTCATTG
66 TAAAAAAAATAATAAATTTATACAATCAACCTCATTG
16890194 TTTTCCCTAT
Statistics
Matches: 94, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
104 2 0.02
105 83 0.88
106 9 0.10
ACGTcount: A:0.41, C:0.12, G:0.05, T:0.43
Consensus pattern (105 bp):
TTTTCTTTTAATTTAACTAAAACTTAAATTACAATTGCATTAGAATTTATAAACTATTCTCGTTT
TAAAAAAAATAATAAATTTATACAATCAACCTCATTGGTA
Found at i:16893171 original size:3 final size:3
Alignment explanation
Indices: 16893163--16893231 Score: 129
Period size: 3 Copynumber: 23.0 Consensus size: 3
16893153 TAAATCATTG
16893163 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
16893211 ATT ATT ATT ATT ATC ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT
16893232 TTGTTTGCAT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:16896278 original size:7 final size:7
Alignment explanation
Indices: 16896262--16896346 Score: 68
Period size: 7 Copynumber: 12.4 Consensus size: 7
16896252 CCCCAAATCG
16896262 AAACCCT
1 AAACCCT
*
16896269 AAACCAT
1 AAACCCT
*
16896276 AAAACCAT
1 -AAACCCT
*
16896284 AAATCC-
1 AAACCCT
16896290 AAACCCT
1 AAACCCT
16896297 AAACCCT
1 AAACCCT
*
16896304 -AACCTT
1 AAACCCT
16896310 AAACCCT
1 AAACCCT
*
16896317 AAACCTT
1 AAACCCT
*
16896324 AAACCAT
1 AAACCCT
*
16896331 -AATCCT
1 AAACCCT
*
16896337 ATACCCT
1 AAACCCT
16896344 AAA
1 AAA
16896347 TCTTAAAACT
Statistics
Matches: 61, Mismatches: 13, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
6 14 0.23
7 40 0.66
8 7 0.11
ACGTcount: A:0.47, C:0.34, G:0.00, T:0.19
Consensus pattern (7 bp):
AAACCCT
Found at i:16896307 original size:13 final size:13
Alignment explanation
Indices: 16896263--16896345 Score: 58
Period size: 13 Copynumber: 6.2 Consensus size: 13
16896253 CCCAAATCGA
*
16896263 AACCCTAAACCAT
1 AACCCTAAACCCT
* * *
16896276 AAAACCATAAATCCA
1 --AACCCTAAACCCT
16896291 AACCCTAAACCCT
1 AACCCTAAACCCT
*
16896304 AACCTTAAACCCT
1 AACCCTAAACCCT
* *
16896317 AAACCTTAAACCAT
1 -AACCCTAAACCCT
* *
16896331 AATCCTATACCCT
1 AACCCTAAACCCT
16896344 AA
1 AA
16896346 ATCTTAAAAC
Statistics
Matches: 54, Mismatches: 13, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
13 33 0.61
14 12 0.22
15 9 0.17
ACGTcount: A:0.46, C:0.35, G:0.00, T:0.19
Consensus pattern (13 bp):
AACCCTAAACCCT
Found at i:16896328 original size:27 final size:27
Alignment explanation
Indices: 16896262--16896353 Score: 80
Period size: 27 Copynumber: 3.4 Consensus size: 27
16896252 CCCCAAATCG
* * *
16896262 AAACCCTAAACCATAAAACCATAAATCC-
1 AAACCTTAAACCAT-AATCC-TAAACCCT
* *
16896290 AAACCCTAAACCCTAA-CCTTAAACCCT
1 AAACCTTAAACCATAATCC-TAAACCCT
*
16896317 AAACCTTAAACCATAATCCTATACCCT
1 AAACCTTAAACCATAATCCTAAACCCT
*
16896344 AAATCTTAAA
1 AAACCTTAAA
16896354 ACTGTAACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
26 8 0.15
27 32 0.58
28 15 0.27
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.21
Consensus pattern (27 bp):
AAACCTTAAACCATAATCCTAAACCCT
Found at i:16897475 original size:11 final size:10
Alignment explanation
Indices: 16897461--16897491 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
16897451 GAAAAATGCA
16897461 AAAAAATTTT
1 AAAAAATTTT
16897471 GAAAAAATTTT
1 -AAAAAATTTT
16897482 AAAAAATTTT
1 AAAAAATTTT
16897492 TTAAAAAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (10 bp):
AAAAAATTTT
Found at i:16897477 original size:12 final size:11
Alignment explanation
Indices: 16897460--16897500 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
16897450 GGAAAAATGC
16897460 AAAAAAATTTT
1 AAAAAAATTTT
*
16897471 GAAAAAATTTT
1 AAAAAAATTTT
*
16897482 AAAAAATTTTTT
1 AAAAAA-ATTTT
16897494 AAAAAAA
1 AAAAAAA
16897501 GAATGTGTGT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
11 15 0.60
12 10 0.40
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (11 bp):
AAAAAAATTTT
Found at i:16897492 original size:11 final size:11
Alignment explanation
Indices: 16897461--16897499 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
16897451 GAAAAATGCA
*
16897461 AAAAAATTTTG
1 AAAAAATTTTT
16897472 AAAAAA-TTTT
1 AAAAAATTTTT
16897482 AAAAAATTTTTT
1 AAAAAA-TTTTT
16897494 AAAAAA
1 AAAAAA
16897500 AGAATGTGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
10 9 0.36
11 6 0.24
12 10 0.40
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (11 bp):
AAAAAATTTTT
Found at i:16897552 original size:25 final size:25
Alignment explanation
Indices: 16897517--16897569 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
16897507 GTGTATTTTA
16897517 CATTTCATGCATATTTTAATTATGT
1 CATTTCATGCATATTTTAATTATGT
* *
16897542 CATTTCTTGCATATTTTAATTATTT
1 CATTTCATGCATATTTTAATTATGT
16897567 CAT
1 CAT
16897570 ACATTTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.26, C:0.13, G:0.06, T:0.55
Consensus pattern (25 bp):
CATTTCATGCATATTTTAATTATGT
Found at i:16898374 original size:11 final size:11
Alignment explanation
Indices: 16898355--16898396 Score: 50
Period size: 12 Copynumber: 3.8 Consensus size: 11
16898345 TCCTTGTTCT
16898355 AAACAAAAAAA
1 AAACAAAAAAA
16898366 AAACCAAAAAAA
1 AAA-CAAAAAAA
**
16898378 CTA-AAAAAAA
1 AAACAAAAAAA
16898388 AAACAAAAA
1 AAACAAAAA
16898397 CAACAGAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
10 8 0.32
11 8 0.32
12 9 0.36
ACGTcount: A:0.86, C:0.12, G:0.00, T:0.02
Consensus pattern (11 bp):
AAACAAAAAAA
Found at i:16898385 original size:21 final size:20
Alignment explanation
Indices: 16898355--16898401 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 20
16898345 TCCTTGTTCT
*
16898355 AAACAAAAAAAAAACCAAAA
1 AAACAAAAAAAAAAACAAAA
16898375 AAACTAAAAAAAAAAACAAAA
1 AAAC-AAAAAAAAAAACAAAA
16898396 ACAACA
1 A-AACA
16898402 GAAATGGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 4 0.17
21 17 0.71
22 3 0.12
ACGTcount: A:0.83, C:0.15, G:0.00, T:0.02
Consensus pattern (20 bp):
AAACAAAAAAAAAAACAAAA
Found at i:16901822 original size:19 final size:19
Alignment explanation
Indices: 16901800--16901848 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
16901790 AAAAAGAATG
16901800 AAAA-GAATGAAAACAAAAA
1 AAAAGGAATGAAAA-AAAAA
16901819 AAAAGGAA-GAAAAAAAAA
1 AAAAGGAATGAAAAAAAAA
*
16901837 AGAAATGAATGA
1 A-AAAGGAATGA
16901849 TTGAATGGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 6 0.23
19 15 0.58
20 5 0.19
ACGTcount: A:0.76, C:0.02, G:0.16, T:0.06
Consensus pattern (19 bp):
AAAAGGAATGAAAAAAAAA
Found at i:16901832 original size:29 final size:25
Alignment explanation
Indices: 16901748--16901832 Score: 91
Period size: 28 Copynumber: 3.2 Consensus size: 25
16901738 TTCACTCAAG
*
16901748 GAAAAA-GAAAACAAAAAAGAAAGAG
1 GAAAAAGGAAAACAAAAAA-AAAGAA
*
16901773 GAAAAAGGAAAAAAAAAAAAAAGAA
1 GAAAAAGGAAAACAAAAAAAAAGAA
*
16901798 TGAAAAGAATGAAAACAAAAAAAAAGGAA
1 -G-AAA-AAGGAAAACAAAAAAAAA-GAA
16901827 GAAAAA
1 GAAAAA
16901833 AAAAAGAAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
25 11 0.22
26 14 0.27
27 6 0.12
28 17 0.33
29 3 0.06
ACGTcount: A:0.78, C:0.02, G:0.18, T:0.02
Consensus pattern (25 bp):
GAAAAAGGAAAACAAAAAAAAAGAA
Found at i:16901837 original size:25 final size:24
Alignment explanation
Indices: 16901748--16901837 Score: 83
Period size: 25 Copynumber: 3.5 Consensus size: 24
16901738 TTCACTCAAG
* *
16901748 GAAAAAGAAAACAAAAAAGAAAGAG
1 GAAAAAAAAAACAAAAAA-AAAGAA
16901773 GAAAAAGGAAAAA-AAAAAAAAAGAA
1 GAAAAA--AAAAACAAAAAAAAAGAA
16901798 TGAAAAGAATGAAAACAAAAAAAAAGGAA
1 -GAAAA-AA--AAAACAAAAAAAAA-GAA
16901827 GAAAAAAAAAA
1 GAAAAAAAAAA
16901838 GAAATGAATG
Statistics
Matches: 55, Mismatches: 2, Indels: 16
0.75 0.03 0.22
Matches are distributed among these distances:
25 16 0.29
26 11 0.20
27 11 0.20
28 14 0.25
29 3 0.05
ACGTcount: A:0.79, C:0.02, G:0.17, T:0.02
Consensus pattern (24 bp):
GAAAAAAAAAACAAAAAAAAAGAA
Found at i:16903639 original size:23 final size:23
Alignment explanation
Indices: 16903596--16903639 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
16903586 TAAAAAAAGA
*
16903596 GGAAAAAAAAAGAATAGAATATG
1 GGAAAAAAAAAGAATAAAATATG
16903619 GGAAAAAGAAAAGAA-AAAATA
1 GGAAAAA-AAAAGAATAAAATA
16903640 AGAAAAATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.70, C:0.00, G:0.20, T:0.09
Consensus pattern (23 bp):
GGAAAAAAAAAGAATAAAATATG
Found at i:16904141 original size:34 final size:33
Alignment explanation
Indices: 16904034--16904141 Score: 119
Period size: 34 Copynumber: 3.2 Consensus size: 33
16904024 TCTTAGGGTG
* *
16904034 AAATTTGACTTTTTTTAAAATTCTCTTGGTGGCA
1 AAATTCGACTTTTCTTAAAATTCTCTT-GTGGCA
* **
16904068 AAA-TCTGATTTTTCTTAAAATTCTCTCTGTGGTG
1 AAATTC-GACTTTTCTTAAAATTCTCT-TGTGGCA
*
16904102 AAATTCGACTTTTCTTAAAATTTTCTTGATGGCA
1 AAATTCGACTTTTCTTAAAATTCTCTTG-TGGCA
16904136 AAATTC
1 AAATTC
16904142 AACCTCCTTT
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
33 3 0.05
34 55 0.90
35 3 0.05
ACGTcount: A:0.28, C:0.14, G:0.13, T:0.45
Consensus pattern (33 bp):
AAATTCGACTTTTCTTAAAATTCTCTTGTGGCA
Found at i:16904154 original size:68 final size:68
Alignment explanation
Indices: 16904030--16904173 Score: 159
Period size: 68 Copynumber: 2.1 Consensus size: 68
16904020 CAAATCTTAG
* * * * *** *
16904030 GGTGAAATTTGACTTTTTTTAAAATTCTCTTGGTGGCAAAATCTGATTTTTCTTAAAA-TTCTCT
1 GGTGAAATTCGACTTTTCTTAAAATTCTCTTGATGGCAAAATCTCAACCTCCTTAAAACTT-TCT
16904094 CTG-T
65 C-GAT
*
16904098 GGTGAAATTCGACTTTTCTTAAAATTTTCTTGATGGCAAAAT-TCAACCTCCTTTAAAACTTTCT
1 GGTGAAATTCGACTTTTCTTAAAATTCTCTTGATGGCAAAATCTCAACCTCC-TTAAAACTTTCT
16904162 CGAT
65 CGAT
16904166 GGTGAAAT
1 GGTGAAAT
16904174 CTAAGTTTTT
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
67 5 0.08
68 57 0.89
69 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (68 bp):
GGTGAAATTCGACTTTTCTTAAAATTCTCTTGATGGCAAAATCTCAACCTCCTTAAAACTTTCTC
GAT
Found at i:16904230 original size:70 final size:70
Alignment explanation
Indices: 16904152--16904288 Score: 179
Period size: 70 Copynumber: 2.0 Consensus size: 70
16904142 AACCTCCTTT
** * * *
16904152 AAAACTTTCTCGATGGTGAA-ATCTAAGTTTTTCTCAAAA-TTTTTTCAGTGGTGATATCCAAGC
1 AAAACTTTCTCGATAAT-AATATCTAAGCTTTTCTCAAAACTTTCTTCA-TGGTGATATCCAAAC
16904215 TTTTTTC
64 TTTTTTC
* *
16904222 AAAACTTTCTCGATAATAATATCTGAGCTTTTCTCAAAACTTTCTTGATGGTGATATCCAAACTT
1 AAAACTTTCTCGATAATAATATCTAAGCTTTTCTCAAAACTTTCTTCATGGTGATATCCAAACTT
16904287 TT
66 TT
16904289 ACAAAATTTC
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
69 2 0.03
70 50 0.86
71 6 0.10
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (70 bp):
AAAACTTTCTCGATAATAATATCTAAGCTTTTCTCAAAACTTTCTTCATGGTGATATCCAAACTT
TTTTC
Found at i:16904244 original size:35 final size:35
Alignment explanation
Indices: 16904203--16904356 Score: 118
Period size: 35 Copynumber: 4.5 Consensus size: 35
16904193 TTTTCAGTGG
16904203 TGATATCCAAGCTTTTTTCAAAACTTTCTCGATAA
1 TGATATCCAAGCTTTTTTCAAAACTTTCTCGATAA
* ** * * **
16904238 TAATATCTGAGCTTTTCTCAAAACTTTCTTGATGG
1 TGATATCCAAGCTTTTTTCAAAACTTTCTCGATAA
* * * *
16904273 TGATATCCAAAC-TTTTACAAAA-TTTCT-AAGTCA
1 TGATATCCAAGCTTTTTTCAAAACTTTCTCGA-TAA
* * * *
16904306 TGATATTCAAGCTTTTTTGAAAAACTTTCTCAATGA
1 TGATATCCAAGCTTTTTT-CAAAACTTTCTCGATAA
*
16904342 TGATATCTAA-CTTTT
1 TGATATCCAAGCTTTT
16904357 ACAAAATCTC
Statistics
Matches: 91, Mismatches: 23, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
32 1 0.01
33 16 0.18
34 12 0.13
35 45 0.49
36 15 0.16
37 2 0.02
ACGTcount: A:0.32, C:0.17, G:0.10, T:0.42
Consensus pattern (35 bp):
TGATATCCAAGCTTTTTTCAAAACTTTCTCGATAA
Found at i:16904310 original size:33 final size:32
Alignment explanation
Indices: 16904273--16904369 Score: 81
Period size: 33 Copynumber: 2.9 Consensus size: 32
16904263 TTCTTGATGG
16904273 TGATATCCAAACTTTTACAAAATTTCT-AAGTCA
1 TGATAT-CAAACTTTTACAAAATTTCTCAA-TCA
* *
16904306 TGATATTCAAGCTTTTTTGA-AAAACTTTCTCAATGA
1 TGATA-TCAAAC--TTTT-ACAAAA-TTTCTCAATCA
* *
16904342 TGATATCTAACTTTTACAAAATCTCTCA
1 TGATATCAAACTTTTACAAAATTTCTCA
16904370 GTGGTAATAT
Statistics
Matches: 52, Mismatches: 5, Indels: 15
0.72 0.07 0.21
Matches are distributed among these distances:
32 7 0.13
33 17 0.33
34 1 0.02
35 12 0.23
36 13 0.25
37 2 0.04
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.39
Consensus pattern (32 bp):
TGATATCAAACTTTTACAAAATTTCTCAATCA
Found at i:16904359 original size:68 final size:69
Alignment explanation
Indices: 16904257--16904391 Score: 173
Period size: 68 Copynumber: 2.0 Consensus size: 69
16904247 AGCTTTTCTC
** * * *
16904257 AAAACTTTCTTGATGGTGATATCCAAACTTTTACAAAATTTCTAAGTCATGATATTCAAGCTTTT
1 AAAACTTTCTCAATGATGATATCCAAACTTTTACAAAATCTCTAAGTCATAATATTCAAGCTTTT
16904322 TTGA
66 TTGA
* * ** *
16904326 AAAACTTTCTCAATGATGATAT-CTAACTTTTACAAAATCTCTCAGTGGTAATATTCAAGTTTTT
1 AAAACTTTCTCAATGATGATATCCAAACTTTTACAAAATCTCTAAGTCATAATATTCAAGCTTTT
16904390 TT
66 TT
16904392 CGATAGTGAT
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
68 37 0.66
69 19 0.34
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.41
Consensus pattern (69 bp):
AAAACTTTCTCAATGATGATATCCAAACTTTTACAAAATCTCTAAGTCATAATATTCAAGCTTTT
TTGA
Found at i:16904595 original size:56 final size:57
Alignment explanation
Indices: 16904480--16904685 Score: 172
Period size: 57 Copynumber: 3.6 Consensus size: 57
16904470 TTTTGTCGTG
* * * *
16904480 ATATCCGAAATCCCTTT-TTTTCACTCAGTGGTT-ATATCTGAGTCCCCTTTGGTGATA
1 ATATCCAAAAT-CGTTTGTTTTCACTCAGT-GTTGATATCTAAGTCCCCTTTGATGATA
** * *
16904537 ATAT-TGAAGTCGTTTGTTTTCACTCAGTGTTGATATCTAAGTCCTCTTTGAT-AGTA
1 ATATCCAAAATCGTTTGTTTTCACTCAGTGTTGATATCTAAGTCCCCTTTGATGA-TA
* * * * * * *
16904593 ATATCCAAAATCTTTTGTTTTTACTCAGTGTTGATATCCAAGTTCCCTTCGATGGTG
1 ATATCCAAAATCGTTTGTTTTCACTCAGTGTTGATATCTAAGTCCCCTTTGATGATA
* * *
16904650 ATATCCAAAGA-CCTTTGTTTT-ACTCAATGGTGATAT
1 ATATCCAAA-ATCGTTTGTTTTCACTCAGTGTTGATAT
16904686 TCAAGTATTT
Statistics
Matches: 123, Mismatches: 20, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
55 8 0.07
56 52 0.42
57 62 0.50
58 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.16, T:0.42
Consensus pattern (57 bp):
ATATCCAAAATCGTTTGTTTTCACTCAGTGTTGATATCTAAGTCCCCTTTGATGATA
Found at i:16904942 original size:50 final size:49
Alignment explanation
Indices: 16904888--16905028 Score: 194
Period size: 50 Copynumber: 2.8 Consensus size: 49
16904878 ACAAGATTTT
*
16904888 TTTTTTTTAAAGTTTGATGCCTATTTTATTGGAGCCCTTTCCAAACGAAA
1 TTTTTTTAAAAGTTTGATGCCTATTTTATTGGAGCCCTTTCCAAAC-AAA
*
16904938 TTTTTTTAAAAGTTTGATGCCTATTTTATAGGAGCCCTTTTCCAAACAAA
1 TTTTTTTAAAAGTTTGATGCCTATTTTATTGGAGCCC-TTTCCAAACAAA
* * *
16904988 TTTTTTTAAAAAATTTAATGCCTATTTCATAT-GAGCCCTTT
1 TTTTTTT-AAAAGTTTGATGCCTATTTTAT-TGGAGCCCTTT
16905029 TCATATAGTG
Statistics
Matches: 82, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
50 48 0.59
51 34 0.41
ACGTcount: A:0.28, C:0.16, G:0.11, T:0.45
Consensus pattern (49 bp):
TTTTTTTAAAAGTTTGATGCCTATTTTATTGGAGCCCTTTCCAAACAAA
Found at i:16906291 original size:25 final size:26
Alignment explanation
Indices: 16906258--16906323 Score: 73
Period size: 25 Copynumber: 2.5 Consensus size: 26
16906248 ATGAAATAGA
16906258 GGAAGAAAATTAAGAAAAAAATCCTT
1 GGAAGAAAATTAAGAAAAAAATCCTT
* *
16906284 GGAA-AAAA-TAGAGAGAAAATTCCTT
1 GGAAGAAAATTA-AGAAAAAAATCCTT
16906309 GTGAAGAAAACTTAA
1 G-GAAGAAAA-TTAA
16906324 AGGTAGACTT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
24 2 0.06
25 17 0.52
26 7 0.21
27 4 0.12
28 1 0.03
29 2 0.06
ACGTcount: A:0.55, C:0.08, G:0.18, T:0.20
Consensus pattern (26 bp):
GGAAGAAAATTAAGAAAAAAATCCTT
Found at i:16907502 original size:22 final size:22
Alignment explanation
Indices: 16907470--16907513 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
16907460 TCTGGTTTTG
*
16907470 TGATTTTATTTTG-TTTTGGGTT
1 TGATTTGA-TTTGCTTTTGGGTT
16907492 TGATTTGATTTGCTTTTGGGTT
1 TGATTTGATTTGCTTTTGGGTT
16907514 CTTTGAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.09, C:0.02, G:0.25, T:0.64
Consensus pattern (22 bp):
TGATTTGATTTGCTTTTGGGTT
Found at i:16908829 original size:37 final size:38
Alignment explanation
Indices: 16908749--16908829 Score: 92
Period size: 38 Copynumber: 2.2 Consensus size: 38
16908739 TCTTTTTTAT
* ** *
16908749 AAAATCCTACCAACATGTTTGAGGATAATCTTTGATAA
1 AAAATCCTACCAACATATTTGAAAATAATCTTTGACAA
* *
16908787 AAAATCGTACCAACATATTTGAAAAT-ATTTTTGACAA
1 AAAATCCTACCAACATATTTGAAAATAATCTTTGACAA
*
16908824 TAAATC
1 AAAATC
16908830 ATGTTTATAG
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
37 14 0.39
38 22 0.61
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.32
Consensus pattern (38 bp):
AAAATCCTACCAACATATTTGAAAATAATCTTTGACAA
Found at i:16913325 original size:10 final size:10
Alignment explanation
Indices: 16913310--16913373 Score: 55
Period size: 10 Copynumber: 6.6 Consensus size: 10
16913300 TAGGAGATGT
16913310 GTAAAAAAAA
1 GTAAAAAAAA
16913320 GTAAAAAGCAAA
1 GTAAAAA--AAA
*
16913332 -TAAAAAGAA
1 GTAAAAAAAA
16913341 --AAAAAAAA
1 GTAAAAAAAA
*
16913349 GAAAAAAAAA
1 GTAAAAAAAA
16913359 G-AAAAAAAA
1 GTAAAAAAAA
*
16913368 GGAAAA
1 GTAAAA
16913374 CTTAAATTGA
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
8 7 0.15
9 11 0.23
10 20 0.43
11 6 0.13
12 3 0.06
ACGTcount: A:0.81, C:0.02, G:0.12, T:0.05
Consensus pattern (10 bp):
GTAAAAAAAA
Found at i:16913326 original size:11 final size:10
Alignment explanation
Indices: 16913322--16913373 Score: 68
Period size: 10 Copynumber: 5.0 Consensus size: 10
16913312 AAAAAAAAGT
*
16913322 AAAAAGCAAAT
1 AAAAAG-AAAA
16913333 AAAAAGAAAAA
1 AAAAAG-AAAA
16913344 AAAAAGAAAA
1 AAAAAGAAAA
16913354 AAAAAGAAAA
1 AAAAAGAAAA
*
16913364 AAAAGGAAAA
1 AAAAAGAAAA
16913374 CTTAAATTGA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
10 23 0.61
11 15 0.39
ACGTcount: A:0.85, C:0.02, G:0.12, T:0.02
Consensus pattern (10 bp):
AAAAAGAAAA
Found at i:16913359 original size:21 final size:22
Alignment explanation
Indices: 16913322--16913367 Score: 76
Period size: 21 Copynumber: 2.1 Consensus size: 22
16913312 AAAAAAAAGT
*
16913322 AAAAAGCAAATAAAAAGAAAAA
1 AAAAAGCAAAAAAAAAGAAAAA
16913344 AAAAAG-AAAAAAAAAGAAAAA
1 AAAAAGCAAAAAAAAAGAAAAA
16913365 AAA
1 AAA
16913368 GGAAAACTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 17 0.74
22 6 0.26
ACGTcount: A:0.87, C:0.02, G:0.09, T:0.02
Consensus pattern (22 bp):
AAAAAGCAAAAAAAAAGAAAAA
Found at i:16914510 original size:21 final size:22
Alignment explanation
Indices: 16914465--16914511 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
16914455 CCTTACATTT
*
16914465 TTTTGAATGTGAAGCTTTGAAG
1 TTTTGAATGTGAAGCCTTGAAG
* *
16914487 TTTTGGATGTGAATCCTT-AAG
1 TTTTGAATGTGAAGCCTTGAAG
16914508 TTTT
1 TTTT
16914512 TCAAATGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.23, C:0.06, G:0.23, T:0.47
Consensus pattern (22 bp):
TTTTGAATGTGAAGCCTTGAAG
Found at i:16914773 original size:16 final size:16
Alignment explanation
Indices: 16914747--16914792 Score: 65
Period size: 16 Copynumber: 2.8 Consensus size: 16
16914737 TCTTAAGAAT
16914747 CTGAGATTCTTGCAAAC
1 CTGA-ATTCTTGCAAAC
16914764 CTGAATTCTTGCAAAC
1 CTGAATTCTTGCAAAC
*
16914780 TTGAAATTCTTGC
1 CTG-AATTCTTGC
16914793 GAATTTGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 14 0.52
17 13 0.48
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (16 bp):
CTGAATTCTTGCAAAC
Found at i:16914806 original size:18 final size:17
Alignment explanation
Indices: 16914752--16914813 Score: 72
Period size: 16 Copynumber: 3.6 Consensus size: 17
16914742 AGAATCTGAG
*
16914752 ATTCTTGCAAACCTG-A
1 ATTCTTGCAAACTTGAA
16914768 ATTCTTGCAAACTTGAA
1 ATTCTTGCAAACTTGAA
* *
16914785 ATTCTTGCGAATTTGAAA
1 ATTCTTGCAAACTTG-AA
*
16914803 ATTCTTCCAAA
1 ATTCTTGCAAA
16914814 TCTAAAATTC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
16 14 0.36
17 14 0.36
18 11 0.28
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.35
Consensus pattern (17 bp):
ATTCTTGCAAACTTGAA
Found at i:16914899 original size:17 final size:17
Alignment explanation
Indices: 16914733--16914915 Score: 81
Period size: 17 Copynumber: 10.8 Consensus size: 17
16914723 GATGAAACTA
**
16914733 AAATTCTTAAGAATCTG
1 AAATTCTTGCGAATCTG
* * *
16914750 AGATTCTTGCAAACCTG
1 AAATTCTTGCGAATCTG
*
16914767 -AATTCTTGC-AAACTTG
1 AAATTCTTGCGAATC-TG
*
16914783 AAATTCTTGCGAATTTG
1 AAATTCTTGCGAATCTG
* * *
16914800 AAAATTCTTCCAAATCTA
1 -AAATTCTTGCGAATCTG
**
16914818 AAATTCTTTTGAAAT-T-
1 AAATTCTTGCG-AATCTG
* *
16914834 AAATTTTTTGTGAATCTG
1 AAA-TTCTTGCGAATCTG
* *
16914852 -AATTCTTACAAATCTTTG
1 AAATTCTTGCGAATC--TG
**
16914870 -AATTCTTATGAATCTG
1 AAATTCTTGCGAATCTG
*
16914886 AAATTCTTGCGAATCTA
1 AAATTCTTGCGAATCTG
**
16914903 AAAAACTTGCGAA
1 AAATTCTTGCGAA
16914916 CCTTTCATTC
Statistics
Matches: 126, Mismatches: 29, Indels: 22
0.71 0.16 0.12
Matches are distributed among these distances:
15 3 0.02
16 26 0.21
17 65 0.52
18 32 0.25
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (17 bp):
AAATTCTTGCGAATCTG
Found at i:16914975 original size:50 final size:51
Alignment explanation
Indices: 16914871--16915000 Score: 127
Period size: 50 Copynumber: 2.6 Consensus size: 51
16914861 AAATCTTTGA
* * * * *
16914871 ATTCTTATGAATCTGAAATTCTTGCGAATCTAAAAAACTTGCGAACCTTTC
1 ATTCTTATGAATCTGAAATTCTTACAAATATAAAAAACTTGCAAACCTTCC
* * * *
16914922 ATTCTTATGAATCT-AAGTTCTTACAAATATGAAAACCTTGCAAATCTTCC
1 ATTCTTATGAATCTGAAATTCTTACAAATATAAAAAACTTGCAAACCTTCC
** * * *
16914972 ATTCTTGCGAATTTAAAAGTCTTACAAAT
1 ATTCTTATGAATCTGAAATTCTTACAAAT
16915001 TTTTGTGTCT
Statistics
Matches: 64, Mismatches: 14, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
50 38 0.59
51 26 0.41
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.36
Consensus pattern (51 bp):
ATTCTTATGAATCTGAAATTCTTACAAATATAAAAAACTTGCAAACCTTCC
Found at i:16915026 original size:17 final size:17
Alignment explanation
Indices: 16915006--16915038 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
16914996 CAAATTTTTG
*
16915006 TGTCTTTTGAATCTTTA
1 TGTCTTGTGAATCTTTA
16915023 TGTCTTGTGAATCTTT
1 TGTCTTGTGAATCTTT
16915039 GAATCTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.12, G:0.15, T:0.58
Consensus pattern (17 bp):
TGTCTTGTGAATCTTTA
Found at i:16915080 original size:18 final size:17
Alignment explanation
Indices: 16915057--16915093 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
16915047 TAATGGAACC
*
16915057 TTGTGAATCTTTGAAGTT
1 TTGTGAACCTTTGAA-TT
16915075 TTGTGAACCTTTGAATT
1 TTGTGAACCTTTGAATT
16915092 TT
1 TT
16915094 CAAATTGTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.22, C:0.08, G:0.19, T:0.51
Consensus pattern (17 bp):
TTGTGAACCTTTGAATT
Found at i:16915690 original size:23 final size:24
Alignment explanation
Indices: 16915660--16915708 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 24
16915650 GGTTTAATTT
16915660 GGTCAAAAG-TAAAAAAAAAAAAA
1 GGTCAAAAGCTAAAAAAAAAAAAA
*
16915683 GGTCAAAAGTCTAAAAAGAAAAAAA
1 GGTCAAAAG-CTAAAAAAAAAAAAA
16915708 G
1 G
16915709 TAACAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 9 0.39
25 14 0.61
ACGTcount: A:0.67, C:0.06, G:0.16, T:0.10
Consensus pattern (24 bp):
GGTCAAAAGCTAAAAAAAAAAAAA
Found at i:16918316 original size:20 final size:19
Alignment explanation
Indices: 16918252--16918316 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 19
16918242 ACCCCAAACA
16918252 CTAACCCT-AAACCTAAACC
1 CTAACCCTAAAACCT-AACC
* ** *
16918271 ATAACTTTAAAACCTAATC
1 CTAACCCTAAAACCTAACC
16918290 CTAAACCCTAAAACCCTAACC
1 CT-AACCCTAAAA-CCTAACC
16918311 CTAACC
1 CTAACC
16918317 TACGCACCAA
Statistics
Matches: 35, Mismatches: 8, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
19 9 0.26
20 18 0.51
21 8 0.23
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.20
Consensus pattern (19 bp):
CTAACCCTAAAACCTAACC
Found at i:16918462 original size:25 final size:24
Alignment explanation
Indices: 16918409--16918468 Score: 61
Period size: 25 Copynumber: 2.5 Consensus size: 24
16918399 TGATCATGCA
16918409 TTCATAC-TTTATTCATATTATAT
1 TTCATACATTTATTCATATTATAT
*
16918432 TGTCATACATTTA-TCATGTTATTAT
1 T-TCATACATTTATTCATATTA-TAT
*
16918457 GTTCATGCATTT
1 -TTCATACATTT
16918469 TTTTTTAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
23 1 0.03
24 13 0.42
25 16 0.52
26 1 0.03
ACGTcount: A:0.27, C:0.13, G:0.07, T:0.53
Consensus pattern (24 bp):
TTCATACATTTATTCATATTATAT
Found at i:16921918 original size:46 final size:46
Alignment explanation
Indices: 16921837--16921961 Score: 121
Period size: 46 Copynumber: 2.8 Consensus size: 46
16921827 ATCTTTAAAA
* * * * *
16921837 TTTTTGAATG-AGATTTTTGAAATCATT-GATATGAATCCCTAAAGT
1 TTTTTGAATGAAAATCTTTGAAAT-TTTGGATGTGAATACCTAAAGT
*
16921882 TTTTTGAATGAAAATCTTTGAAATTTTGGATGTGAATATCTAAAGT
1 TTTTTGAATGAAAATCTTTGAAATTTTGGATGTGAATACCTAAAGT
* ** * *
16921928 TTGTCAAATAAAAATCTTT-AAATTCTGGATGTGA
1 TTTTTGAATGAAAATCTTTGAAATTTTGGATGTGA
16921962 GCAAATCTTT
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
45 26 0.39
46 41 0.61
ACGTcount: A:0.35, C:0.07, G:0.16, T:0.42
Consensus pattern (46 bp):
TTTTTGAATGAAAATCTTTGAAATTTTGGATGTGAATACCTAAAGT
Found at i:16922147 original size:16 final size:17
Alignment explanation
Indices: 16922128--16922367 Score: 107
Period size: 16 Copynumber: 14.4 Consensus size: 17
16922118 CTTTAAAATG
16922128 GTGAA-CTGAAATTCTT
1 GTGAATCTGAAATTCTT
* *
16922144 GTGAATCTAAAATTTTT
1 GTGAATCTGAAATTCTT
* *
16922161 ATGAATATGAAA-TCTT
1 GTGAATCTGAAATTCTT
* *
16922177 GTGAATTTAAAAATTCTT
1 GTGAATCT-GAAATTCTT
** *
16922195 GCAAATCT-AAGTTCTT
1 GTGAATCTGAAATTCTT
* * *
16922211 ATGAATTTGAAAATTTTT
1 GTGAATCTG-AAATTCTT
* *
16922229 ATGAATCTAAAATTCTT
1 GTGAATCTGAAATTCTT
** * *
16922246 GAAAATTTG-AGTTCTT
1 GTGAATCTGAAATTCTT
* *
16922262 ATGAATATGAAATTCTT
1 GTGAATCTGAAATTCTT
** * *
16922279 GCAAATATG-AGTTCTT
1 GTGAATCTGAAATTCTT
* * *
16922295 CTGAATCTG-AGTTTTT
1 GTGAATCTGAAATTCTT
*
16922311 GTGAATATGAAATTCTT
1 GTGAATCTGAAATTCTT
* *
16922328 GTGAATATG-AGTTCTT
1 GTGAATCTGAAATTCTT
** *
16922344 GCAAATATGAAATTCTT
1 GTGAATCTGAAATTCTT
*
16922361 GTAAATC
1 GTGAATC
16922368 AAAACAAGTG
Statistics
Matches: 164, Mismatches: 52, Indels: 15
0.71 0.23 0.06
Matches are distributed among these distances:
16 73 0.45
17 69 0.42
18 22 0.13
ACGTcount: A:0.35, C:0.09, G:0.15, T:0.42
Consensus pattern (17 bp):
GTGAATCTGAAATTCTT
Found at i:16922202 original size:51 final size:50
Alignment explanation
Indices: 16922128--16922333 Score: 157
Period size: 51 Copynumber: 4.1 Consensus size: 50
16922118 CTTTAAAATG
* ** * *
16922128 GTGAA-CTGAAATTCTTGTGAATCTAAAATTTTTATGAATATGAAA-TCTT
1 GTGAATCTAAAATTCTTGAAAATCT-AAGTTCTTATGAATATGAAATTCTT
* * * *
16922177 GTGAATTTAAAAATTCTTGCAAATCTAAGTTCTTATGAATTTGAAAATTTTT
1 GTGAATCT-AAAATTCTTGAAAATCTAAGTTCTTATGAATATG-AAATTCTT
* * *
16922229 ATGAATCTAAAATTCTTGAAAATTTGAGTTCTTATGAATATGAAATTCTT
1 GTGAATCTAAAATTCTTGAAAATCTAAGTTCTTATGAATATGAAATTCTT
** * * * *** * * *
16922279 GCAAATAT-GAGTTCTTCTGAATCTGAGTTTTTGTGAATATGAAATTCTT
1 GTGAATCTAAAATTCTTGAAAATCTAAGTTCTTATGAATATGAAATTCTT
16922328 GTGAAT
1 GTGAAT
16922334 ATGAGTTCTT
Statistics
Matches: 124, Mismatches: 29, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
49 42 0.34
50 26 0.21
51 47 0.38
52 9 0.07
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42
Consensus pattern (50 bp):
GTGAATCTAAAATTCTTGAAAATCTAAGTTCTTATGAATATGAAATTCTT
Found at i:16922236 original size:34 final size:32
Alignment explanation
Indices: 16922137--16922238 Score: 98
Period size: 33 Copynumber: 3.1 Consensus size: 32
16922127 GGTGAACTGA
* *
16922137 AATTCTTGTGAATCTAAAATTTTTATGAATAT
1 AATTCTTGTGAATTTAAAATTTTTATGAATCT
* * *
16922169 GAAATCTTGTGAATTTAAAAATTCT-TGCAAATCT
1 -AATTCTTGTGAATTTAAAATTTTTATG--AATCT
*
16922203 AAGTTCTTATGAATTTGAAAATTTTTATGAATCT
1 AA-TTCTTGTGAATTT-AAAATTTTTATGAATCT
16922237 AA
1 AA
16922239 AATTCTTGAA
Statistics
Matches: 55, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
32 2 0.04
33 22 0.40
34 22 0.40
35 7 0.13
36 2 0.04
ACGTcount: A:0.38, C:0.08, G:0.11, T:0.43
Consensus pattern (32 bp):
AATTCTTGTGAATTTAAAATTTTTATGAATCT
Found at i:16922275 original size:33 final size:33
Alignment explanation
Indices: 16922227--16922300 Score: 103
Period size: 33 Copynumber: 2.2 Consensus size: 33
16922217 TTGAAAATTT
* *
16922227 TTATGAATCTAAAATTCTTGAAAATTTGAGTTC
1 TTATGAATATAAAATTCTTGAAAATATGAGTTC
* *
16922260 TTATGAATATGAAATTCTTGCAAATATGAGTTC
1 TTATGAATATAAAATTCTTGAAAATATGAGTTC
*
16922293 TTCTGAAT
1 TTATGAAT
16922301 CTGAGTTTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (33 bp):
TTATGAATATAAAATTCTTGAAAATATGAGTTC
Found at i:16922361 original size:33 final size:33
Alignment explanation
Indices: 16922257--16922362 Score: 124
Period size: 33 Copynumber: 3.2 Consensus size: 33
16922247 AAAATTTGAG
* * *
16922257 TTCTTATGAATATGAAATTCTTGCAAATATG-AG
1 TTCTTGTGAATATG-AGTTCTTGCAAATATGAAA
* * * **
16922290 TTCTTCTGAATCTGAGTTTTTGTGAATATGAAA
1 TTCTTGTGAATATGAGTTCTTGCAAATATGAAA
16922323 TTCTTGTGAATATGAGTTCTTGCAAATATGAAA
1 TTCTTGTGAATATGAGTTCTTGCAAATATGAAA
16922356 TTCTTGT
1 TTCTTGT
16922363 AAATCAAAAC
Statistics
Matches: 60, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
32 12 0.20
33 48 0.80
ACGTcount: A:0.30, C:0.09, G:0.17, T:0.43
Consensus pattern (33 bp):
TTCTTGTGAATATGAGTTCTTGCAAATATGAAA
Found at i:16923740 original size:21 final size:21
Alignment explanation
Indices: 16923705--16923757 Score: 88
Period size: 21 Copynumber: 2.4 Consensus size: 21
16923695 CCAAGGCATG
16923705 GAAAAGAAGATCAAGATCAAGAT
1 GAAAAG-A-ATCAAGATCAAGAT
16923728 GAAAAGAATCAAGATCAAGAT
1 GAAAAGAATCAAGATCAAGAT
16923749 GAAAAGAAT
1 GAAAAGAAT
16923758 TAAAGCAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 23 0.77
22 1 0.03
23 6 0.20
ACGTcount: A:0.58, C:0.08, G:0.21, T:0.13
Consensus pattern (21 bp):
GAAAAGAATCAAGATCAAGAT
Found at i:16924700 original size:21 final size:21
Alignment explanation
Indices: 16924675--16924716 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
16924665 GTTTCATATA
16924675 TTGGTTTAGTTTGATTCTATT
1 TTGGTTTAGTTTGATTCTATT
* *
16924696 TTGGTTTATTTTGGTTCTATT
1 TTGGTTTAGTTTGATTCTATT
16924717 GCATGTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.12, C:0.05, G:0.19, T:0.64
Consensus pattern (21 bp):
TTGGTTTAGTTTGATTCTATT
Found at i:16924707 original size:10 final size:11
Alignment explanation
Indices: 16924675--16924716 Score: 52
Period size: 10 Copynumber: 4.0 Consensus size: 11
16924665 GTTTCATATA
*
16924675 TTGGTT-TAGT
1 TTGGTTCTATT
*
16924685 TTGATTCTATT
1 TTGGTTCTATT
16924696 TTGGTT-TATT
1 TTGGTTCTATT
16924706 TTGGTTCTATT
1 TTGGTTCTATT
16924717 GCATGTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
10 15 0.56
11 12 0.44
ACGTcount: A:0.12, C:0.05, G:0.19, T:0.64
Consensus pattern (11 bp):
TTGGTTCTATT
Found at i:16926028 original size:10 final size:11
Alignment explanation
Indices: 16926015--16926060 Score: 51
Period size: 10 Copynumber: 4.3 Consensus size: 11
16926005 TTTTTCTTAT
16926015 TTTTC-CTTTC
1 TTTTCTCTTTC
16926025 TTTTCTCTTTC
1 TTTTCTCTTTC
*
16926036 -TTTCTCTCTC
1 TTTTCTCTTTC
*
16926046 TCTCTCTCTTTC
1 T-TTTCTCTTTC
16926058 TTT
1 TTT
16926061 CCAAAGCTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
10 14 0.48
11 6 0.21
12 9 0.31
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (11 bp):
TTTTCTCTTTC
Found at i:16929352 original size:25 final size:25
Alignment explanation
Indices: 16929323--16929370 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
16929313 AAAATGTATC
16929323 ACAAATAAAAAAATAAATAAAATTT
1 ACAAATAAAAAAATAAATAAAATTT
*
16929348 ACAAATAAATAAATAAATAAAAT
1 ACAAATAAAAAAATAAATAAAAT
16929371 ATCAAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.23
Consensus pattern (25 bp):
ACAAATAAAAAAATAAATAAAATTT
Found at i:16933602 original size:39 final size:38
Alignment explanation
Indices: 16933506--16933604 Score: 99
Period size: 39 Copynumber: 2.5 Consensus size: 38
16933496 GAATAGACAG
*
16933506 ATAATCAACAAGTAAAATAAATAAATAAACAAAAATAAA
1 ATAA-CAAAAAGTAAAATAAATAAATAAACAAAAATAAA
* * * * * *
16933545 ATAACAAGAAGGATAAATAAATATATAGATACAAATAAA
1 ATAACAAAAAGTA-AAATAAATAAATAAACAAAAATAAA
*
16933584 TATAACAAAAATTAAAATAAA
1 -ATAACAAAAAGTAAAATAAA
16933605 AAGGAGAAAA
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
38 7 0.14
39 32 0.65
40 10 0.20
ACGTcount: A:0.69, C:0.06, G:0.05, T:0.20
Consensus pattern (38 bp):
ATAACAAAAAGTAAAATAAATAAATAAACAAAAATAAA
Found at i:16933617 original size:54 final size:54
Alignment explanation
Indices: 16933524--16933627 Score: 140
Period size: 54 Copynumber: 1.9 Consensus size: 54
16933514 CAAGTAAAAT
* *
16933524 AAATAAATAAACAAAAATAAAATAACAAGAAGGATAAATA-AATATATAGATAC
1 AAATAAATAAACAAAAATAAAATAAAAAGAAGGAAAAATATAATATATAGATAC
*
16933577 AAATAAATATAACAAAAATTAAAATAAAAAGGA-GAAAAATATTAATATATA
1 AAATAAATA-AACAAAAA-TAAAATAAAAAGAAGGAAAAATA-TAATATATA
16933628 TAACCCAAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
53 9 0.20
54 15 0.34
55 12 0.27
56 8 0.18
ACGTcount: A:0.68, C:0.04, G:0.07, T:0.21
Consensus pattern (54 bp):
AAATAAATAAACAAAAATAAAATAAAAAGAAGGAAAAATATAATATATAGATAC
Found at i:16934066 original size:24 final size:27
Alignment explanation
Indices: 16934038--16934086 Score: 77
Period size: 24 Copynumber: 1.9 Consensus size: 27
16934028 TTTGATTCTC
16934038 AAGAATTCAAA-TTTT-CAA-ATTTGT
1 AAGAATTCAAAGTTTTGCAAGATTTGT
16934062 AAGAATTCAAAGTTTTGCAAGATTT
1 AAGAATTCAAAGTTTTGCAAGATTT
16934087 TCAAATTCGC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 11 0.50
25 4 0.18
26 3 0.14
27 4 0.18
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (27 bp):
AAGAATTCAAAGTTTTGCAAGATTTGT
Found at i:16934114 original size:15 final size:15
Alignment explanation
Indices: 16934090--16934132 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 15
16934080 AAGATTTTCA
16934090 AATTCGCAAGAATTT
1 AATTCGCAAGAATTT
*
16934105 AATTCTCAAGAATTTT
1 AATTCGCAAGAA-TTT
16934121 ATATTCGCAAGA
1 A-ATTCGCAAGA
16934133 TTTTCATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 11 0.46
16 4 0.17
17 9 0.38
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.35
Consensus pattern (15 bp):
AATTCGCAAGAATTT
Found at i:16934149 original size:17 final size:16
Alignment explanation
Indices: 16934078--16934142 Score: 69
Period size: 17 Copynumber: 3.9 Consensus size: 16
16934068 TCAAAGTTTT
*
16934078 GCAAGATTTTCAAATTC
1 GCAAGATTTT-ATATTC
*
16934095 GCAAGAATTTA-ATTC
1 GCAAGATTTTATATTC
*
16934110 TCAAGAATTTTATATTC
1 GCAAG-ATTTTATATTC
16934127 GCAAGATTTTCATATT
1 GCAAGATTTT-ATATT
16934143 TGTAAGACAC
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
15 8 0.20
16 11 0.27
17 22 0.54
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.40
Consensus pattern (16 bp):
GCAAGATTTTATATTC
Found at i:16934194 original size:17 final size:17
Alignment explanation
Indices: 16934169--16934203 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
16934159 TCGTAAAAAC
16934169 TCAGATTCGCAAGAATT
1 TCAGATTCGCAAGAATT
* *
16934186 TCAGGTTCGTAAGAATT
1 TCAGATTCGCAAGAATT
16934203 T
1 T
16934204 GATTTTCAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.34
Consensus pattern (17 bp):
TCAGATTCGCAAGAATT
Found at i:16934368 original size:23 final size:21
Alignment explanation
Indices: 16934298--16934351 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
16934288 AATTTAGTGG
*
16934298 TTCACA-TCAAAATTTCAAAA
1 TTCACATTCAAAATTTAAAAA
*
16934318 CTCACATTCAAAATTTAAAAA
1 TTCACATTCAAAATTTAAAAA
16934339 TTCACATTCAAAA
1 TTCACATTCAAAA
16934352 ATTTTAGAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 5 0.17
21 25 0.83
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (21 bp):
TTCACATTCAAAATTTAAAAA
Found at i:16934461 original size:22 final size:23
Alignment explanation
Indices: 16934436--16934533 Score: 62
Period size: 22 Copynumber: 4.3 Consensus size: 23
16934426 CCAAATTTTC
16934436 AAAGATTCTCATTA-AAAAATTT
1 AAAGATTCTCATTACAAAAATTT
* **
16934458 AAAGATTCACATT-TGAAAATTT
1 AAAGATTCTCATTACAAAAATTT
* *
16934480 -TAGATAT-TCA-TACCCAAAATTT
1 AAAGAT-TCTCATTA-CAAAAATTT
* * *
16934502 CAAATATTCTCATTAGAAAATTTT
1 -AAAGATTCTCATTACAAAAATTT
16934526 AAAGATTC
1 AAAGATTC
16934534 ATAACTAAAA
Statistics
Matches: 56, Mismatches: 12, Indels: 15
0.67 0.14 0.18
Matches are distributed among these distances:
20 1 0.02
21 6 0.11
22 27 0.48
23 8 0.14
24 12 0.21
25 2 0.04
ACGTcount: A:0.45, C:0.12, G:0.06, T:0.37
Consensus pattern (23 bp):
AAAGATTCTCATTACAAAAATTT
Found at i:16934481 original size:23 final size:22
Alignment explanation
Indices: 16934428--16934534 Score: 79
Period size: 23 Copynumber: 4.7 Consensus size: 22
16934418 ATCCATACCC
* *
16934428 AAATTTTCAAAGATTCTCATTAA
1 AAATTTT-AAAGATTCACATTGA
*
16934451 AAAATTTAAAGATTCACATTTGA
1 AAATTTTAAAGATTCACA-TTGA
* * * ***
16934474 AAATTTTAGATATTCATACCCA
1 AAATTTTAAAGATTCACATTGA
* * *
16934496 AAATTTCAAATATTCTCATTAGA
1 AAATTTTAAAGATTCACATT-GA
16934519 AAATTTTAAAGATTCA
1 AAATTTTAAAGATTCA
16934535 TAACTAAAAT
Statistics
Matches: 62, Mismatches: 20, Indels: 4
0.72 0.23 0.05
Matches are distributed among these distances:
22 25 0.40
23 37 0.60
ACGTcount: A:0.45, C:0.12, G:0.06, T:0.37
Consensus pattern (22 bp):
AAATTTTAAAGATTCACATTGA
Found at i:16934523 original size:45 final size:45
Alignment explanation
Indices: 16934450--16934606 Score: 154
Period size: 45 Copynumber: 3.5 Consensus size: 45
16934440 ATTCTCATTA
* * * *
16934450 AAAAATTT-AAAGATTCACATTTGAAAATTTTAGATATTCATACC
1 AAAAATTTCAAAGATTCTCATTAGAAAATTTTAAAAATTCATACC
* * * *
16934494 CAAAATTTCAAATATTCTCATTAGAAAATTTTAAAGATTCATAAC
1 AAAAATTTCAAAGATTCTCATTAGAAAATTTTAAAAATTCATACC
* * * ** *
16934539 TAAAATTTCAAATATTCTTATTCTAAAATTTTATAAATTCATATCC
1 AAAAATTTCAAAGATTCTCATTAGAAAATTTTAAAAATTCATA-CC
* *
16934585 AAAAATTTTAAAGATTTTCATT
1 AAAAATTTCAAAGATTCTCATT
16934607 GTGAGCTCAA
Statistics
Matches: 92, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
44 7 0.08
45 67 0.73
46 18 0.20
ACGTcount: A:0.45, C:0.11, G:0.04, T:0.40
Consensus pattern (45 bp):
AAAAATTTCAAAGATTCTCATTAGAAAATTTTAAAAATTCATACC
Found at i:16934544 original size:67 final size:67
Alignment explanation
Indices: 16934421--16934555 Score: 182
Period size: 67 Copynumber: 2.0 Consensus size: 67
16934411 TTAAGAGATC
* ** * *
16934421 CATACCCAAATTTTCAAAGATTCTCATTAAAAAATTTAAAGATTCACATTTGAAAATTTTAGATA
1 CATACCCAAAATTTCAAAGATTCTCATTAAAAAATTTAAAGATTCACAACTGAAAATTTCAAATA
16934486 TT
66 TT
* * *
16934488 CATACCCAAAATTTCAAATATTCTCATTAGAAAATTTTAAAGATTCATAACT-AAAATTTCAAAT
1 CATACCCAAAATTTCAAAGATTCTCATTA-AAAAATTTAAAGATTCACAACTGAAAATTTCAAAT
16934552 ATT
65 ATT
16934555 C
1 C
16934556 TTATTCTAAA
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
67 41 0.69
68 18 0.31
ACGTcount: A:0.44, C:0.15, G:0.04, T:0.36
Consensus pattern (67 bp):
CATACCCAAAATTTCAAAGATTCTCATTAAAAAATTTAAAGATTCACAACTGAAAATTTCAAATA
TT
Found at i:16934578 original size:23 final size:23
Alignment explanation
Indices: 16934473--16934596 Score: 94
Period size: 23 Copynumber: 5.5 Consensus size: 23
16934463 TTCACATTTG
* *
16934473 AAAATTTTAGATATTCATA-CCC
1 AAAATTTTAAATATTCATATCCT
* ***
16934495 AAAATTTCAAATATTC-TCATTAG
1 AAAATTTTAAATATTCAT-ATCCT
* *
16934518 AAAATTTTAAAGATTCATA-ACT
1 AAAATTTTAAATATTCATATCCT
* * *
16934540 AAAATTTCAAATATTCTTATTCT
1 AAAATTTTAAATATTCATATCCT
*
16934563 AAAATTTTATAA-ATTCATATCCA
1 AAAATTTTA-AATATTCATATCCT
16934586 AAAATTTTAAA
1 AAAATTTTAAA
16934597 GATTTTCATT
Statistics
Matches: 79, Mismatches: 18, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
21 1 0.01
22 33 0.42
23 42 0.53
24 3 0.04
ACGTcount: A:0.46, C:0.12, G:0.02, T:0.40
Consensus pattern (23 bp):
AAAATTTTAAATATTCATATCCT
Found at i:16939096 original size:20 final size:20
Alignment explanation
Indices: 16939071--16939118 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
16939061 GAAAACATAT
16939071 CAAAATTTTTCACCATTTGG
1 CAAAATTTTTCACCATTTGG
16939091 CAAAATTTTTCACCATTTGG
1 CAAAATTTTTCACCATTTGG
*
16939111 CCAAATTT
1 CAAAATTT
16939119 GGAAATATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.40
Consensus pattern (20 bp):
CAAAATTTTTCACCATTTGG
Found at i:16943078 original size:21 final size:21
Alignment explanation
Indices: 16943054--16943103 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
16943044 TAACATGTAT
* * *
16943054 AAATATTAATAATAAAATTTA
1 AAATAATAAAAATAAAATTAA
*
16943075 AAATAATAAAAATAATATTAA
1 AAATAATAAAAATAAAATTAA
16943096 AAA-AATAA
1 AAATAATAA
16943104 TTCACAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 5 0.20
21 20 0.80
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (21 bp):
AAATAATAAAAATAAAATTAA
Found at i:16944575 original size:50 final size:50
Alignment explanation
Indices: 16944481--16944654 Score: 201
Period size: 50 Copynumber: 3.5 Consensus size: 50
16944471 CTCCAAGTAG
* * * *
16944481 AGGCTCAACAAC-TTAAAAAAAAATTTCTTAAAAAAGTTCCTCTAAGCAA
1 AGGCTCAACAACTTTAAAAAAAATTTTCTTGAAAAAGATCATCTAAGCAA
*
16944530 AGGCTCAACAACTTTAAAAAAAATTTTCTTGAAAAAGATCATCTAAGTAA
1 AGGCTCAACAACTTTAAAAAAAATTTTCTTGAAAAAGATCATCTAAGCAA
* * * *
16944580 AGGCTCAACAACTTT--AAAAAATTCTTCTTAGAAAAGGCTCTTCTAAGCAG
1 AGGCTCAACAACTTTAAAAAAAATT-TTCTT-GAAAAAGATCATCTAAGCAA
* * *
16944630 ATGATCAACAACTTTAAAGAAAATT
1 AGGCTCAACAACTTTAAAAAAAATT
16944655 CTCATTTTGG
Statistics
Matches: 107, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
48 8 0.07
49 17 0.16
50 75 0.70
52 7 0.07
ACGTcount: A:0.46, C:0.17, G:0.10, T:0.27
Consensus pattern (50 bp):
AGGCTCAACAACTTTAAAAAAAATTTTCTTGAAAAAGATCATCTAAGCAA
Found at i:16944591 original size:99 final size:100
Alignment explanation
Indices: 16944475--16944654 Score: 247
Period size: 100 Copynumber: 1.8 Consensus size: 100
16944465 AAACTCCTCC
* * *
16944475 AAGTAGAGGCTCAACAACTTAAAAAAAAAT-TTCTTA-AAAAAGTTCCTCTAAGCAAAGGCTCAA
1 AAGTAAAGGCTCAACAACTT-AAAAAAAATCTTCTTAGAAAAAGCTCCTCTAAGCAAAGGATCAA
16944538 CAACTTTAAAAAAAATTTTCTTGAAAAAGATCATCT
65 CAACTTTAAAAAAAATTTTCTTGAAAAAGATCATCT
* * * * * *
16944574 AAGTAAAGGCTCAACAACTTTAAAAAATTCTTCTTAGAAAAGGCTCTTCTAAGCAGATGATCAAC
1 AAGTAAAGGCTCAACAACTTAAAAAAAATCTTCTTAGAAAAAGCTCCTCTAAGCAAAGGATCAAC
*
16944639 AACTTTAAAGAAAATT
66 AACTTTAAAAAAAATT
16944655 CTCATTTTGG
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
98 7 0.10
99 25 0.36
100 37 0.54
ACGTcount: A:0.46, C:0.16, G:0.11, T:0.27
Consensus pattern (100 bp):
AAGTAAAGGCTCAACAACTTAAAAAAAATCTTCTTAGAAAAAGCTCCTCTAAGCAAAGGATCAAC
AACTTTAAAAAAAATTTTCTTGAAAAAGATCATCT
Found at i:16945600 original size:17 final size:17
Alignment explanation
Indices: 16945578--16945614 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
16945568 AGATATGTCA
16945578 TTTTTTTAACTTTTTCT
1 TTTTTTTAACTTTTTCT
**
16945595 TTTTTTTTTCTTTTTCT
1 TTTTTTTAACTTTTTCT
16945612 TTT
1 TTT
16945615 CAAGTAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTTTTTAACTTTTTCT
Found at i:16953021 original size:15 final size:15
Alignment explanation
Indices: 16953003--16953037 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
16952993 AAAATTTAAG
16953003 AAAATAAAAAGAAAA
1 AAAATAAAAAGAAAA
*
16953018 AAAATAAAAATAAAA
1 AAAATAAAAAGAAAA
16953033 AAAAT
1 AAAAT
16953038 GATTCAGCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.86, C:0.00, G:0.03, T:0.11
Consensus pattern (15 bp):
AAAATAAAAAGAAAA
Found at i:16953227 original size:9 final size:8
Alignment explanation
Indices: 16953214--16953281 Score: 50
Period size: 9 Copynumber: 8.0 Consensus size: 8
16953204 TAAATAATTC
16953214 TAATATAA
1 TAATATAA
16953222 TCAATA-AA
1 T-AATATAA
16953230 TAATAATAA
1 TAAT-ATAA
16953239 TAATAATAA
1 TAAT-ATAA
*
16953248 CAATAATAA
1 TAAT-ATAA
*
16953257 TAATAAAA
1 TAATATAA
16953265 TAA-ATATA
1 TAATATA-A
16953273 TAAATATAA
1 T-AATATAA
16953282 AAAAAAAACC
Statistics
Matches: 50, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
7 5 0.10
8 13 0.26
9 29 0.58
10 3 0.06
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (8 bp):
TAATATAA
Found at i:16953233 original size:16 final size:16
Alignment explanation
Indices: 16953214--16953278 Score: 66
Period size: 15 Copynumber: 4.1 Consensus size: 16
16953204 TAAATAATTC
16953214 TAAT-ATAATCAATAAA
1 TAATAATAAT-AATAAA
16953230 TAATAATAATAAT-AA
1 TAATAATAATAATAAA
*
16953245 TAACAATAATAAT-AA
1 TAATAATAATAATAAA
16953260 TAA-AATAAATATATAAA
1 TAATAAT-AATA-ATAAA
16953277 TA
1 TA
16953279 TAAAAAAAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
14 3 0.07
15 23 0.52
16 9 0.20
17 9 0.20
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (16 bp):
TAATAATAATAATAAA
Found at i:16953236 original size:3 final size:3
Alignment explanation
Indices: 16953214--16953267 Score: 67
Period size: 3 Copynumber: 18.0 Consensus size: 3
16953204 TAAATAATTC
*
16953214 TAA T-A TAA TCAA TAAA TAA TAA TAA TAA TAA TAA CAA TAA TAA TAA
1 TAA TAA TAA T-AA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
16953260 TAA -AA TAA
1 TAA TAA TAA
16953268 ATATATAAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
2 4 0.09
3 35 0.78
4 6 0.13
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:16953270 original size:12 final size:13
Alignment explanation
Indices: 16953218--16953275 Score: 57
Period size: 12 Copynumber: 4.3 Consensus size: 13
16953208 TAATTCTAAT
16953218 ATAATCAATAAATA
1 ATAA-CAATAAATA
*
16953232 ATAATAAT-AATA
1 ATAACAATAAATA
16953244 ATAACAATAATAATA
1 ATAACAAT-A-AATA
16953259 ATAA-AATAAATA
1 ATAACAATAAATA
16953271 TATAA
1 -ATAA
16953276 ATATAAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
12 15 0.39
13 8 0.21
14 7 0.18
15 8 0.21
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.29
Consensus pattern (13 bp):
ATAACAATAAATA
Found at i:16953281 original size:14 final size:12
Alignment explanation
Indices: 16953224--16953282 Score: 57
Period size: 12 Copynumber: 4.5 Consensus size: 12
16953214 TAATATAATC
16953224 AATAAATAATAA
1 AATAAATAATAA
16953236 TAAT-AATAATAA
1 -AATAAATAATAA
16953248 CAATAATAATAATAA
1 -AAT-A-AATAATAA
16953263 AATAAATATATAA
1 AATAAATA-ATAA
16953276 ATATAAA
1 A-ATAAA
16953283 AAAAAAACCT
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
12 15 0.38
13 9 0.22
14 8 0.20
15 8 0.20
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (12 bp):
AATAAATAATAA
Found at i:16953584 original size:17 final size:16
Alignment explanation
Indices: 16953564--16953596 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
16953554 TCTTTCCCTC
16953564 TCTCTCTTCTCCTCTTT
1 TCTCTCTTCT-CTCTTT
16953581 TCTCTCTTCTCTCTTT
1 TCTCTCTTCTCTCTTT
16953597 AAACAATCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (16 bp):
TCTCTCTTCTCTCTTT
Found at i:16954069 original size:22 final size:23
Alignment explanation
Indices: 16954044--16954098 Score: 80
Period size: 22 Copynumber: 2.5 Consensus size: 23
16954034 AAAAGATAAA
*
16954044 ATAAATTAA-AATATATTAATAG
1 ATAAATTAATAATATATGAATAG
16954066 ATAAA-TAATAATATATGAATAG
1 ATAAATTAATAATATATGAATAG
16954088 ATAAA-TAATAA
1 ATAAATTAATAA
16954099 AAAATATATA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 3 0.10
22 28 0.90
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (23 bp):
ATAAATTAATAATATATGAATAG
Found at i:16954168 original size:10 final size:10
Alignment explanation
Indices: 16954144--16954197 Score: 54
Period size: 12 Copynumber: 4.8 Consensus size: 10
16954134 ATGTTAATTG
16954144 ATAAATAATA
1 ATAAATAATA
16954154 ATAATATATATTA
1 ATAA-ATA-A-TA
16954167 ATAAATAATA
1 ATAAATAATA
16954177 ATAGCAATAATAA
1 ATA--AATAAT-A
16954190 ATAAATAA
1 ATAAATAA
16954198 ATAAAAATTG
Statistics
Matches: 38, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
10 9 0.24
11 9 0.24
12 10 0.26
13 10 0.26
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (10 bp):
ATAAATAATA
Found at i:16954192 original size:23 final size:23
Alignment explanation
Indices: 16954144--16954197 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
16954134 ATGTTAATTG
*
16954144 ATAAATAATAATAATATATATTA
1 ATAAATAATAATAATATATATAA
16954167 ATAAATAATAATAGCA-ATA-ATAA
1 ATAAATAATAATA--ATATATATAA
16954190 ATAAATAA
1 ATAAATAA
16954198 ATAAAAATTG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
23 24 0.86
24 3 0.11
25 1 0.04
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (23 bp):
ATAAATAATAATAATATATATAA
Done.