Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25818110
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 67000 characters in sequence are not A, C, G, or T
File 94 of 127
Found at i:17667338 original size:17 final size:17
Alignment explanation
Indices: 17667273--17667338 Score: 63
Period size: 17 Copynumber: 4.2 Consensus size: 17
17667263 AATAAAAGTG
17667273 AAAAT-AAATAAAGAT-
1 AAAATAAAATAAAGATA
17667288 -AAA-AAAATAAAG--A
1 AAAATAAAATAAAGATA
* * *
17667301 AAAGTAAAACAAAAATA
1 AAAATAAAATAAAGATA
17667318 AAAATAAAATAAAGATA
1 AAAATAAAATAAAGATA
17667335 AAAA
1 AAAA
17667339 GAATATTAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
14 13 0.33
15 7 0.18
17 19 0.49
ACGTcount: A:0.79, C:0.02, G:0.06, T:0.14
Consensus pattern (17 bp):
AAAATAAAATAAAGATA
Found at i:17667385 original size:12 final size:11
Alignment explanation
Indices: 17667364--17667393 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
17667354 CTAATCTAAT
17667364 AAAAAAATAAA
1 AAAAAAATAAA
17667375 AAAACAAATAAA
1 AAAA-AAATAAA
17667387 AAAAAAA
1 AAAAAAA
17667394 ACCTGGAGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.90, C:0.03, G:0.00, T:0.07
Consensus pattern (11 bp):
AAAAAAATAAA
Found at i:17668587 original size:19 final size:19
Alignment explanation
Indices: 17668560--17668602 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
17668550 GAAGATTCAC
* *
17668560 CGGATTCTGGATTTTTCGT
1 CGGAATCTGGAATTTTCGT
17668579 CGGAATCTGGAATTTTCGT
1 CGGAATCTGGAATTTTCGT
17668598 CGGAA
1 CGGAA
17668603 GTTCGTCGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.19, C:0.16, G:0.28, T:0.37
Consensus pattern (19 bp):
CGGAATCTGGAATTTTCGT
Found at i:17668781 original size:26 final size:26
Alignment explanation
Indices: 17668750--17668799 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17668740 GGAAATTTTT
17668750 CAAAAATTTCCAAAAAATTTTTTCGC
1 CAAAAATTTCCAAAAAATTTTTTCGC
* *
17668776 CAAAAATTTCTAAAAATTTTTTTC
1 CAAAAATTTCCAAAAAATTTTTTC
17668800 TCACTCCCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.42, C:0.16, G:0.02, T:0.40
Consensus pattern (26 bp):
CAAAAATTTCCAAAAAATTTTTTCGC
Found at i:17669378 original size:20 final size:21
Alignment explanation
Indices: 17669353--17669392 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
17669343 GGGCTTACCC
17669353 ATTTGGGCCAGG-CCCAATTG
1 ATTTGGGCCAGGACCCAATTG
*
17669373 ATTTGGGCCTGGACCCAATT
1 ATTTGGGCCAGGACCCAATT
17669393 AGGTGTCTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.20, C:0.25, G:0.28, T:0.28
Consensus pattern (21 bp):
ATTTGGGCCAGGACCCAATTG
Found at i:17669507 original size:10 final size:10
Alignment explanation
Indices: 17669488--17669531 Score: 65
Period size: 10 Copynumber: 4.6 Consensus size: 10
17669478 AACATTGTCA
*
17669488 TTTTTGTTGT
1 TTTTTTTTGT
17669498 TTTTTTTTG-
1 TTTTTTTTGT
17669507 -TTTTTTTGT
1 TTTTTTTTGT
17669516 TTTTTTTTGT
1 TTTTTTTTGT
17669526 TTTTTT
1 TTTTTT
17669532 ACCAAAGCTC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
8 8 0.26
10 23 0.74
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (10 bp):
TTTTTTTTGT
Found at i:17669515 original size:18 final size:18
Alignment explanation
Indices: 17669488--17669531 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
17669478 AACATTGTCA
17669488 TTTTTGTTGTTTTTTTTTG
1 TTTTT-TTGTTTTTTTTTG
17669507 TTTTTTTGTTTTTTTTTG
1 TTTTTTTGTTTTTTTTTG
17669525 TTTTTTT
1 TTTTTTT
17669532 ACCAAAGCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 20 0.80
19 5 0.20
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (18 bp):
TTTTTTTGTTTTTTTTTG
Found at i:17669633 original size:42 final size:42
Alignment explanation
Indices: 17669538--17669830 Score: 453
Period size: 42 Copynumber: 7.0 Consensus size: 42
17669528 TTTTACCAAA
* * *
17669538 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAAAGTAAATT
*
17669581 GCTCCTCTAAACAGAGGCACCATGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
* * *
17669623 GCTCCTCTAAACAGAGGCACCACAACTTTTGAAAATTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
*
17669665 GCTCCTCTAAACAAAGGCACCACGACTTTGG-AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
*
17669706 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
17669748 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
* ** *
17669790 GCTCCTCTAAACAGAGGCAACGGGACTTTGGAAATGTAAAT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAAT
17669831 ACTCCTTGAC
Statistics
Matches: 230, Mismatches: 19, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
41 38 0.17
42 165 0.72
43 27 0.12
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
Found at i:17669734 original size:83 final size:83
Alignment explanation
Indices: 17669538--17669808 Score: 445
Period size: 83 Copynumber: 3.2 Consensus size: 83
17669528 TTTTACCAAA
* *
17669538 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACGTAAATTGCTCCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCACGACTTTGA-AAA-GTAAATTGCTCCTCTAAACAGAGGCACCA
*
17669603 TGACTTTGGAAAAGTAAATT
64 CGACTTTGGAAAAGTAAATT
* * *
17669623 GCTCCTCTAAACAGAGGCACCACAACTTTTGAAAATTAAATTGCTCCTCTAAACAAAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
17669688 GACTTTGG-AAAGTAAATT
65 GACTTTGGAAAAGTAAATT
17669706 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-AAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
17669771 GACTTTGGAAAAGTAAATT
65 GACTTTGGAAAAGTAAATT
17669790 GCTCCTCTAAACAGAGGCA
1 GCTCCTCTAAACAGAGGCA
17669809 ACGGGACTTT
Statistics
Matches: 174, Mismatches: 9, Indels: 7
0.92 0.05 0.04
Matches are distributed among these distances:
82 4 0.02
83 75 0.43
84 64 0.37
85 26 0.15
86 5 0.03
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (83 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
ACTTTGGAAAAGTAAATT
Found at i:17669762 original size:125 final size:126
Alignment explanation
Indices: 17669538--17669830 Score: 462
Period size: 125 Copynumber: 2.3 Consensus size: 126
17669528 TTTTACCAAA
* *
17669538 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACGTAAATTGCTCCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAACGTAAATTGCTCCTCTAAACAGAGGCACCA
* * * *
17669603 TGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAACTTTTGAAAATTAAATT
65 CGACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAACTTTGGAAAAGTAAATT
*
17669665 GCTCCTCTAAACAAAGGCACCACGACTTTGGAAA-GTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAACGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
17669729 GACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
66 GACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAACTTTGGAAAAGTAAATT
* ** *
17669790 GCTCCTCTAAACAGAGGCAACGGGACTTTGGAAATGTAAAT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAACGTAAAT
17669831 ACTCCTTGAC
Statistics
Matches: 153, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
125 116 0.76
126 10 0.07
127 27 0.18
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (126 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAACGTAAATTGCTCCTCTAAACAGAGGCACCAC
GACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAACTTTGGAAAAGTAAATT
Found at i:17671094 original size:10 final size:10
Alignment explanation
Indices: 17671084--17671163 Score: 72
Period size: 11 Copynumber: 7.6 Consensus size: 10
17671074 TCTTTTTTCA
17671084 TTTTTTCTCAT
1 TTTTTTCTC-T
* *
17671095 TTTTTCCTTCA
1 TTTTTTC-TCT
17671106 TTTTTTCAT-T
1 TTTTTTC-TCT
*
17671116 TTTTTTTTCTT
1 TTTTTTCTC-T
17671127 TTTTTTCTCT
1 TTTTTTCTCT
*
17671137 TTTTTTATCT
1 TTTTTTCTCT
17671147 TTTTTTCATCT
1 TTTTTTC-TCT
17671158 TTTTTT
1 TTTTTT
17671164 TTTCATTTTT
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
9 1 0.02
10 22 0.39
11 31 0.55
12 2 0.04
ACGTcount: A:0.06, C:0.15, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTTTTCTCT
Found at i:17671106 original size:12 final size:12
Alignment explanation
Indices: 17671080--17671112 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
17671070 AATCTCTTTT
17671080 TTCATTTTTT-C
1 TTCATTTTTTCC
17671091 -TCATTTTTTCC
1 TTCATTTTTTCC
17671102 TTCATTTTTTC
1 TTCATTTTTTC
17671113 ATTTTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 9 0.45
11 1 0.05
12 10 0.50
ACGTcount: A:0.09, C:0.21, G:0.00, T:0.70
Consensus pattern (12 bp):
TTCATTTTTTCC
Found at i:17671120 original size:11 final size:11
Alignment explanation
Indices: 17671076--17671173 Score: 66
Period size: 10 Copynumber: 9.2 Consensus size: 11
17671066 TTTGAATCTC
17671076 TTTTTTCA-TT
1 TTTTTTCATTT
*
17671086 TTTTCTCATTT
1 TTTTTTCATTT
*
17671097 TTTCCTTCA---
1 TTT-TTTCATTT
17671106 TTTTTTCATTTT
1 TTTTTTCA-TTT
17671118 TTTTTTC-TTT
1 TTTTTTCATTT
17671128 TTTTTCTC-TTT
1 TTTTT-TCATTT
*
17671139 TTTTATC-TTT
1 TTTTTTCATTT
* *
17671149 TTTTCATCTTTT
1 TTTT-TTCATTT
17671161 TTTTTTCATTT
1 TTTTTTCATTT
17671172 TT
1 TT
17671174 CATCCATTAT
Statistics
Matches: 72, Mismatches: 7, Indels: 17
0.75 0.07 0.18
Matches are distributed among these distances:
8 4 0.06
9 3 0.04
10 24 0.33
11 24 0.33
12 17 0.24
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTTTTCATTT
Found at i:17671129 original size:41 final size:41
Alignment explanation
Indices: 17671076--17671173 Score: 110
Period size: 43 Copynumber: 2.3 Consensus size: 41
17671066 TTTGAATCTC
*
17671076 TTTTTTCATTTTTTCTCATTTTTTCCT-TCATTTTTTCA-TTTT
1 TTTTTTCTTTTTTTCTC-TTTTTT--TATCATTTTTTCACTTTT
*
17671118 TTTTTTCTTTTTTTTCTCTTTTTTTATCTTTTTTTCATCTTTT
1 TTTTTTC-TTTTTTTCTCTTTTTTTATCATTTTTTCA-CTTTT
*
17671161 TTTTTTCATTTTT
1 TTTTTTCTTTTTT
17671174 CATCCATTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
40 1 0.02
41 10 0.20
42 18 0.37
43 20 0.41
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (41 bp):
TTTTTTCTTTTTTTCTCTTTTTTTATCATTTTTTCACTTTT
Found at i:17671172 original size:21 final size:21
Alignment explanation
Indices: 17671076--17671177 Score: 79
Period size: 21 Copynumber: 4.8 Consensus size: 21
17671066 TTTGAATCTC
17671076 TTTTTTCATTTTTTC-TCATTTT
1 TTTTTTCA-TTTTTCATC-TTTT
**
17671098 TTCCTTCATTTTTTCAT-TTTT
1 TTTTTTCA-TTTTTCATCTTTT
**
17671119 TTTTTCTTTTTTTTC-TCTTTT
1 TTTTT-TCATTTTTCATCTTTT
17671140 TTTATCTT--TTTTTCATCTTTT
1 TTT-T-TTCATTTTTCATCTTTT
17671161 TTTTTTCATTTTTCATC
1 TTTTTTCATTTTTCATC
17671178 CATTATTGAT
Statistics
Matches: 66, Mismatches: 6, Indels: 17
0.74 0.07 0.19
Matches are distributed among these distances:
19 2 0.03
20 8 0.12
21 38 0.58
22 16 0.24
23 2 0.03
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTTTTCATTTTTCATCTTTT
Found at i:17671173 original size:10 final size:10
Alignment explanation
Indices: 17671076--17671163 Score: 69
Period size: 10 Copynumber: 8.6 Consensus size: 10
17671066 TTTGAATCTC
17671076 TTTTTTCATT
1 TTTTTTCATT
*
17671086 TTTTCTCATT
1 TTTTTTCATT
17671096 TTTTCCTTCA--
1 TTTT--TTCATT
17671106 TTTTTTCATTTT
1 TTTTTTCA--TT
17671118 TTTTTTC-TT
1 TTTTTTCATT
17671127 TTTTTTC-TCT
1 TTTTTTCAT-T
17671137 TTTTTT-ATCT
1 TTTTTTCAT-T
17671147 TTTTTTCATCT
1 TTTTTTCAT-T
17671158 TTTTTT
1 TTTTTT
17671164 TTTCATTTTT
Statistics
Matches: 67, Mismatches: 2, Indels: 17
0.78 0.02 0.20
Matches are distributed among these distances:
8 4 0.06
9 10 0.15
10 33 0.49
11 10 0.15
12 10 0.15
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.78
Consensus pattern (10 bp):
TTTTTTCATT
Found at i:17671174 original size:41 final size:41
Alignment explanation
Indices: 17671076--17671174 Score: 112
Period size: 41 Copynumber: 2.3 Consensus size: 41
17671066 TTTGAATCTC
17671076 TTTTTTCATTTTTTCTCATTTTTTCCTTCATTTTTTCATTTTT
1 TTTTTTCA-TTTTTCTCATTTTTT-CTTCATTTTTTCATTTTT
** *
17671119 TTTTTCTTTTTTTTCTC-TTTTTT-TATCTTTTTTTCATCTTTT
1 TTTTT-TCATTTTTCTCATTTTTTCT-TCATTTTTTCAT-TTTT
17671161 TTTTTTCATTTTTC
1 TTTTTTCATTTTTC
17671175 ATCCATTATT
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
40 1 0.02
41 18 0.38
42 15 0.31
43 13 0.27
44 1 0.02
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.78
Consensus pattern (41 bp):
TTTTTTCATTTTTCTCATTTTTTCTTCATTTTTTCATTTTT
Found at i:17675112 original size:59 final size:59
Alignment explanation
Indices: 17675047--17675512 Score: 523
Period size: 59 Copynumber: 7.7 Consensus size: 59
17675037 TTGTACAGGA
* * *
17675047 AAAATTGATACTTTCAACTTTTCCCTGAAAATATTTTTTTTGAAACTTTAATTTCGAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAACTTTATTTTCAAGG
*
17675106 AAAATTGATACTTTCAACTTTT-CCTCAAAAATTTATTTTTTTTGAAAATTTA--TT-AAGG
1 AAAATTGATACTTTCAACTTTTCCCT-AAAAA--TATTTTTTTTGAAACTTTATTTTCAAGG
*
17675164 AAAATTGATACTTTCAACTTTT-CCTCAAAAATCTTTTTTTTTTTTGAAAACTTTGATTTTCAAG
1 AAAATTGATACTTTCAACTTTTCCCT-AAAAA----TATTTTTTTTG-AAACTTT-ATTTTCAAG
17675228 G
59 G
* * *
17675229 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAACTTTAATTTCGAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAACTTTATTTTCAAGG
* * * *
17675288 AAAATTGATACTTTCAACTTTTCCTTAAAAATTTATTTTTTTGAAATTTTGATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATAT-TTTTTTTGAAACTTT-ATTTTCAAGG
* * * * * *
17675349 AAAATTGATACTTTCAACTTTTCCTCAAAAAGAAAAAATCCTTTTTTGAAATTTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCC-C---TA-AAAATAT-TTTTTTTGAAACTTTATTTTCAAGG
* *
17675414 AAAATTGATACTTTCAATTTTTCCC-AAAAA-ATATTTTTTGAAACTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAACTTT-ATTTTCAAGG
*
17675472 AAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTT
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTT
17675513 TATTTTTATT
Statistics
Matches: 356, Mismatches: 30, Indels: 41
0.83 0.07 0.10
Matches are distributed among these distances:
57 13 0.04
58 71 0.20
59 77 0.22
60 40 0.11
61 65 0.18
62 1 0.00
64 3 0.01
65 64 0.18
66 22 0.06
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (59 bp):
AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAACTTTATTTTCAAGG
Found at i:17675524 original size:58 final size:58
Alignment explanation
Indices: 17675047--17675532 Score: 471
Period size: 58 Copynumber: 8.1 Consensus size: 58
17675037 TTGTACAGGA
** * * *
17675047 AAAATTGATACTTTCAACTTTTCCCTGAAAATATTTTTTTTGAAACTTTAATTTCGAGG
1 AAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTT-AAATTTTATTTTCAAGG
* *
17675106 AAAATTGATACTTTCAACTTTTCCTCAAAAATTTATTTTTTTTGAAAATTTA--TT-AAGG
1 AAAATTGATACTTTCAACTTTTCC-CAAAAA-ATATTTTTTTT-AAATTTTATTTTCAAGG
* * *
17675164 AAAATTGATACTTTCAACTTTTCCTCAAAAATCTTTTTTTTTTTTGAAAACTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCC-CAAAAA---ATATTTTTTTT--AAA-TTTTATTTTCAAGG
* * * * *
17675229 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAACTTTAATTTCGAGG
1 AAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTT-AAATTTTATTTTCAAGG
* * * *
17675288 AAAATTGATACTTTCAACTTTTCCTTAAAAATTTATTTTTTTGAAATTTTGATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCC-CAAAAA-ATATTTTTTTTAAATTTT-ATTTTCAAGG
* * * *
17675349 AAAATTGATACTTTCAACTTTTCCTCAAAAAGAAAAAATCCTTTTTTGAAATTTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCC-C---AA-AAAATAT--TTTTTTTAAATTTTATTTTCAAGG
* * *
17675414 AAAATTGATACTTTCAATTTTTCCCAAAAAATA-TTTTTTGAAACTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTTAAA-TTTTATTTTCAAGG
* *
17675472 AAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTTTATTTTTATTTT-AA-G
1 AAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTTAAATTTTATTTTCAAGG
17675528 AAAAT
1 AAAAT
17675533 AGAACAAAAT
Statistics
Matches: 366, Mismatches: 41, Indels: 43
0.81 0.09 0.10
Matches are distributed among these distances:
56 6 0.02
57 12 0.03
58 85 0.23
59 67 0.18
60 31 0.08
61 73 0.20
62 3 0.01
64 12 0.03
65 63 0.17
66 14 0.04
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.46
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTTAAATTTTATTTTCAAGG
Found at i:17675555 original size:22 final size:22
Alignment explanation
Indices: 17675527--17675568 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
17675517 TTTATTTTAA
17675527 GAAAATAGAACAAA-ATAAAATT
1 GAAAATA-AACAAAGATAAAATT
*
17675549 GAAAATAAATAAAGATAAAA
1 GAAAATAAACAAAGATAAAA
17675569 AAAATAAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.71, C:0.02, G:0.10, T:0.17
Consensus pattern (22 bp):
GAAAATAAACAAAGATAAAATT
Found at i:17675598 original size:17 final size:17
Alignment explanation
Indices: 17675528--17675616 Score: 58
Period size: 16 Copynumber: 5.2 Consensus size: 17
17675518 TTATTTTAAG
*
17675528 AAAATAGAAC-AAAATA
1 AAAATAAAACAAAAATA
* * *
17675544 AAATTGAAA-ATAAATA
1 AAAATAAAACAAAAATA
* *
17675560 AAGATAAAA-AAAATAAA
1 AAAATAAAACAAAA-ATA
17675577 GAAAAGTAAAACAAAAATA
1 -AAAA-TAAAACAAAAATA
* *
17675596 AAAATAAAATAAAGATA
1 AAAATAAAACAAAAATA
17675613 AAAA
1 AAAA
17675617 GAATATTAAA
Statistics
Matches: 55, Mismatches: 13, Indels: 9
0.71 0.17 0.12
Matches are distributed among these distances:
16 20 0.36
17 17 0.31
18 7 0.13
19 7 0.13
20 4 0.07
ACGTcount: A:0.76, C:0.02, G:0.07, T:0.15
Consensus pattern (17 bp):
AAAATAAAACAAAAATA
Found at i:17675613 original size:11 final size:10
Alignment explanation
Indices: 17675528--17675615 Score: 56
Period size: 10 Copynumber: 8.4 Consensus size: 10
17675518 TTATTTTAAG
* *
17675528 AAAATAGAAC
1 AAAATAAAAT
17675538 AAAATAAAATT
1 AAAATAAAA-T
17675549 GAAAAT-AAAT
1 -AAAATAAAAT
17675559 AAAGATAAAA-
1 AAA-ATAAAAT
17675569 AAAATAAAGA-
1 AAAATAAA-AT
* *
17675579 AAAGTAAAACA
1 AAAATAAAA-T
17675590 AAAATAAAAAT
1 AAAAT-AAAAT
17675601 AAAATAAAGAT
1 AAAATAAA-AT
17675612 AAAA
1 AAAA
17675616 AGAATATTAA
Statistics
Matches: 64, Mismatches: 5, Indels: 17
0.74 0.06 0.20
Matches are distributed among these distances:
9 9 0.14
10 25 0.39
11 21 0.33
12 9 0.14
ACGTcount: A:0.76, C:0.02, G:0.07, T:0.15
Consensus pattern (10 bp):
AAAATAAAAT
Found at i:17675664 original size:22 final size:22
Alignment explanation
Indices: 17675639--17675681 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
17675629 AACCTAATCT
17675639 AATAAA-AAAATAAAAAAAAACA
1 AATAAATAAAA-AAAAAAAAACA
*
17675661 AATAAATTAAAAAAAAAAAAC
1 AATAAATAAAAAAAAAAAAAC
17675682 CTGGAGCGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.84, C:0.05, G:0.00, T:0.12
Consensus pattern (22 bp):
AATAAATAAAAAAAAAAAAACA
Found at i:17675672 original size:14 final size:13
Alignment explanation
Indices: 17675550--17675679 Score: 52
Period size: 14 Copynumber: 9.3 Consensus size: 13
17675540 AATAAAATTG
17675550 AAAATAAATAAAGAT
1 AAAATAAA-AAA-AT
*
17675565 AAAA-AAAATAAAG
1 AAAATAAAA-AAAT
17675578 AAAAGTAAAACAAA-
1 AAAA-TAAAA-AAAT
17675592 AATAA-AAATAAAAT
1 AA-AATAAA-AAAAT
17675606 AAAGATAAAAAGAAT
1 AAA-ATAAAAA-AAT
**
17675621 ATTAAATAAACCTAAT
1 A--AAATAAA-AAAAT
**
17675637 CTAATAAAAAAAT
1 AAAATAAAAAAAT
*
17675650 AAAAAAAAACAAAT
1 AAAATAAAA-AAAT
*
17675664 AAATTAAAAAAA-
1 AAAATAAAAAAAT
17675676 AAAA
1 AAAA
17675680 ACCTGGAGCG
Statistics
Matches: 88, Mismatches: 14, Indels: 29
0.67 0.11 0.22
Matches are distributed among these distances:
12 3 0.03
13 25 0.28
14 30 0.34
15 20 0.23
16 8 0.09
17 2 0.02
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAATAAAAAAAT
Found at i:17677086 original size:26 final size:26
Alignment explanation
Indices: 17677036--17677084 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17677026 TGAAAATTTT
17677036 CCAAAAATTTCCAGAAAATTTTTTCG
1 CCAAAAATTTCCAGAAAATTTTTTCG
*
17677062 CCAAAAATTTCTA-AAAATTTTTT
1 CCAAAAATTTCCAGAAAATTTTTT
17677085 TCTCACTTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.41, C:0.16, G:0.04, T:0.39
Consensus pattern (26 bp):
CCAAAAATTTCCAGAAAATTTTTTCG
Found at i:17678128 original size:31 final size:31
Alignment explanation
Indices: 17678088--17678188 Score: 116
Period size: 31 Copynumber: 3.3 Consensus size: 31
17678078 TTTTGAGGCA
17678088 TGATATCTTCCATGAATGCCACGTGATCTTT
1 TGATATCTTCCATGAATGCCACGTGATCTTT
* * * *
17678119 TAATATCTTCCATTAATGCCACTTGACCTTT
1 TGATATCTTCCATGAATGCCACGTGATCTTT
* * *
17678150 TGATACCCTT-CATGAATGCAACGTAATC-TT
1 TGATA-TCTTCCATGAATGCCACGTGATCTTT
17678180 TGATATCTT
1 TGATATCTT
17678189 TAGAATCAAA
Statistics
Matches: 57, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
29 3 0.05
30 7 0.12
31 44 0.77
32 3 0.05
ACGTcount: A:0.26, C:0.23, G:0.12, T:0.40
Consensus pattern (31 bp):
TGATATCTTCCATGAATGCCACGTGATCTTT
Found at i:17683033 original size:209 final size:209
Alignment explanation
Indices: 17682673--17683089 Score: 737
Period size: 209 Copynumber: 2.0 Consensus size: 209
17682663 AAAATGATTT
17682673 GGTTGTTGGTTTGCCAAAACTGAAATATGAAAATGACAAGTTTTGTGATGCTTATGCTCAAGAAA
1 GGTTGTTGGTTTGCCAAAACTGAAATATGAAAATGACAAGTTTTGTGATGCTTATGCTCAAGAAA
* *
17682738 AACGTAGAAAAATCTATTTCAAACCTAAGAATTGCATTTCAACTACTAGACCTCTTCAACTACTT
66 AACATAAAAAAATCTATTTCAAACCTAAGAATTGCATTTCAACTACTAGACCTCTTCAACTACTT
17682803 CATATTGATCTTTTTGGCCCTATTAAAATAATGAGTATGGTGAAAAACAATATGGGTTTGTTATT
131 CATATTGATCTTTTTGGCCCTATTAAAATAATGAGTATGGTGAAAAACAATATGGGTTTGTTATT
17682868 ATTGATGATTTTAG
196 ATTGATGATTTTAG
* * *
17682882 GGTTGTTGGTTTGCCAAAACTGAAATATGAAAATGACAAGTTTTTTTATGCTTGTGCTCAATG-A
1 GGTTGTTGGTTTGCCAAAACTGAAATATGAAAATGACAAGTTTTGTGATGCTTATGCTCAA-GAA
* * *
17682946 AAACATAAAAAAATCTCTTTCAAACCTAAGAATTGCATTTCAACTACTATACCTCTTTAACTACT
65 AAACATAAAAAAATCTATTTCAAACCTAAGAATTGCATTTCAACTACTAGACCTCTTCAACTACT
*
17683011 TCATATTGATCTTTTTGGCCCTATTAAAATAATGAGTCTGGTGAAAAACAATATGGGTTTGTTAT
130 TCATATTGATCTTTTTGGCCCTATTAAAATAATGAGTATGGTGAAAAACAATATGGGTTTGTTAT
17683076 TATTGATGATTTTA
195 TATTGATGATTTTA
17683090 CTAGATTCAC
Statistics
Matches: 198, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
209 197 0.99
210 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.37
Consensus pattern (209 bp):
GGTTGTTGGTTTGCCAAAACTGAAATATGAAAATGACAAGTTTTGTGATGCTTATGCTCAAGAAA
AACATAAAAAAATCTATTTCAAACCTAAGAATTGCATTTCAACTACTAGACCTCTTCAACTACTT
CATATTGATCTTTTTGGCCCTATTAAAATAATGAGTATGGTGAAAAACAATATGGGTTTGTTATT
ATTGATGATTTTAG
Found at i:17687629 original size:15 final size:15
Alignment explanation
Indices: 17687609--17687649 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
17687599 TTTTATTCTC
17687609 TTATGGCTTGTAACA
1 TTATGGCTTGTAACA
* *
17687624 TTATGGCTTTTGACA
1 TTATGGCTTGTAACA
*
17687639 TTGTGGCTTGT
1 TTATGGCTTGT
17687650 GAAATTGATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.17, C:0.12, G:0.24, T:0.46
Consensus pattern (15 bp):
TTATGGCTTGTAACA
Found at i:17696584 original size:22 final size:22
Alignment explanation
Indices: 17696549--17696601 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 22
17696539 TTAAAAAATG
17696549 AAAATAATAACATAAAACA-AAAC
1 AAAATAA-AACATAAAA-ATAAAC
17696572 -AAATAAAACCATAAAAATAAAC
1 AAAATAAAA-CATAAAAATAAAC
17696594 AAAATAAA
1 AAAATAAA
17696602 CAAAATATCG
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
21 3 0.11
22 17 0.63
23 7 0.26
ACGTcount: A:0.75, C:0.11, G:0.00, T:0.13
Consensus pattern (22 bp):
AAAATAAAACATAAAAATAAAC
Found at i:17697505 original size:11 final size:11
Alignment explanation
Indices: 17697489--17697543 Score: 51
Period size: 11 Copynumber: 5.0 Consensus size: 11
17697479 TTTTTTTAAC
17697489 AAATAATAATA
1 AAATAATAATA
*
17697500 AAATAACAATA
1 AAATAATAATA
*
17697511 AGATAATAA-A
1 AAATAATAATA
*
17697521 TAATGAAATAATA
1 AAAT--AATAATA
17697534 AAA-AATAATA
1 AAATAATAATA
17697544 GTAAGATAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
10 10 0.29
11 17 0.49
12 5 0.14
13 3 0.09
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.24
Consensus pattern (11 bp):
AAATAATAATA
Found at i:17697508 original size:18 final size:18
Alignment explanation
Indices: 17697485--17697541 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
17697475 TCCTTTTTTT
17697485 TAACAAATAATAATAAAA
1 TAACAAATAATAATAAAA
17697503 TAAC-AATAAGATAAT-AAA
1 TAACAAAT-A-ATAATAAAA
*
17697521 TAATGAAATAATAA-AAAA
1 TAA-CAAATAATAATAAAA
17697539 TAA
1 TAA
17697542 TAGTAAGATA
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
17 3 0.09
18 21 0.64
19 6 0.18
20 3 0.09
ACGTcount: A:0.70, C:0.04, G:0.04, T:0.23
Consensus pattern (18 bp):
TAACAAATAATAATAAAA
Found at i:17697552 original size:18 final size:18
Alignment explanation
Indices: 17697494--17697555 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
17697484 TTAACAAATA
* *
17697494 ATAATAAAATAACAATAAG
1 ATAA-AAAATAATAGTAAG
* * *
17697513 ATAATAAATAAT-GAAATA
1 ATAAAAAATAATAGTAA-G
17697531 ATAAAAAATAATAGTAAG
1 ATAAAAAATAATAGTAAG
17697549 ATAAAAA
1 ATAAAAA
17697556 TACAAGGATA
Statistics
Matches: 33, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
17 2 0.06
18 24 0.73
19 7 0.21
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.23
Consensus pattern (18 bp):
ATAAAAAATAATAGTAAG
Found at i:17697983 original size:44 final size:44
Alignment explanation
Indices: 17697935--17698139 Score: 164
Period size: 44 Copynumber: 4.6 Consensus size: 44
17697925 AGGCTTAACA
* *
17697935 ACTTTCAAAAAATAAATATA-GCTCCTTTAAATAGAGGCTCAATG
1 ACTTTTAAAAAATAAATA-AGGCTCCTCTAAATAGAGGCTCAATG
* * * *
17697979 ACTTTTGAAAAACAAATAAGGCTCATCTAAACT-GAAGCTCAATG
1 ACTTTTAAAAAATAAATAAGGCTCCTCTAAA-TAGAGGCTCAATG
* * * * **
17698023 ATTTTTTAAAAATAAATAAGGCTCCACTAAACAGAGATTCAATG
1 ACTTTTAAAAAATAAATAAGGCTCCTCTAAATAGAGGCTCAATG
* * * *
17698067 A-TTTTAAAAATAATAATATTAAAGTTCCTCTAAATAGAGGCTAAACG
1 ACTTTT-AAAA-AATAA-A-TAAGGCTCCTCTAAATAGAGGCTCAATG
* * *
17698114 ACTTTTGAAAATTAAATAAGGTTCCT
1 ACTTTTAAAAAATAAATAAGGCTCCT
17698140 TAACAATCAT
Statistics
Matches: 126, Mismatches: 27, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
43 5 0.04
44 81 0.64
45 7 0.06
46 5 0.04
47 24 0.19
48 4 0.03
ACGTcount: A:0.44, C:0.14, G:0.12, T:0.30
Consensus pattern (44 bp):
ACTTTTAAAAAATAAATAAGGCTCCTCTAAATAGAGGCTCAATG
Found at i:17699241 original size:7 final size:7
Alignment explanation
Indices: 17699229--17699270 Score: 54
Period size: 7 Copynumber: 6.3 Consensus size: 7
17699219 GTTTCATTCA
17699229 TTCTTTT
1 TTCTTTT
17699236 TTC--TT
1 TTCTTTT
17699241 TTC-TTT
1 TTCTTTT
17699247 TTCTTTT
1 TTCTTTT
17699254 TCTCTTTT
1 T-TCTTTT
17699262 TTCTTTT
1 TTCTTTT
17699269 TT
1 TT
17699271 TTAAGCATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
5 5 0.16
6 5 0.16
7 15 0.47
8 7 0.22
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (7 bp):
TTCTTTT
Found at i:17715722 original size:2 final size:2
Alignment explanation
Indices: 17715707--17715751 Score: 54
Period size: 2 Copynumber: 21.5 Consensus size: 2
17715697 CAAGATGACA
* *
17715707 AT AT AT AGT GT AT AT AT AT AT AT AT ACT AT AT AT AT GT AT AT AT
1 AT AT AT A-T AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT
17715751 A
1 A
17715752 ATCCCTCAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
2 34 0.92
3 3 0.08
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47
Consensus pattern (2 bp):
AT
Found at i:17715731 original size:19 final size:19
Alignment explanation
Indices: 17715707--17715751 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
17715697 CAAGATGACA
* *
17715707 ATATATAGTGTATATATAT
1 ATATATACTATATATATAT
*
17715726 ATATATACTATATATATGT
1 ATATATACTATATATATAT
17715745 ATATATA
1 ATATATA
17715752 ATCCCTCAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47
Consensus pattern (19 bp):
ATATATACTATATATATAT
Found at i:17715737 original size:17 final size:17
Alignment explanation
Indices: 17715717--17715749 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
17715707 ATATATAGTG
17715717 TATATATATATATATAC
1 TATATATATATATATAC
*
17715734 TATATATATGTATATA
1 TATATATATATATATA
17715750 TAATCCCTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (17 bp):
TATATATATATATATAC
Found at i:17718357 original size:15 final size:15
Alignment explanation
Indices: 17718337--17718369 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
17718327 AAAAGTTATG
*
17718337 ATAATTTTAAACATA
1 ATAATTCTAAACATA
17718352 ATAATTCTAAACATA
1 ATAATTCTAAACATA
17718367 ATA
1 ATA
17718370 GAATATAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (15 bp):
ATAATTCTAAACATA
Found at i:17718968 original size:231 final size:223
Alignment explanation
Indices: 17718623--17719324 Score: 646
Period size: 231 Copynumber: 3.0 Consensus size: 223
17718613 TCTTGTAACA
*
17718623 TAAATAATTA-AGTT-GTCAACTTAAAATTTAACTAATTATTTTT-TAAACATATAAAAAAATAG
1 TAAATAATTATA-TTGGT-AACTTAAAATTT--C-AATTATTTTTCTAAATATATAAAAAAATAG
* ** *
17718685 CTAAAAATTAAAAATATATTGGTAACATAAACAAGTTAGAAGAAATATAAAATTAGTATCATTTA
61 CT-AAAATTAAAAATAAATTGGTAATGTAAATAAG-TA-AAGAAATATAAAATTAGTATCATTTA
* * *** * * *
17718750 GCATGAATTATATATGAATTGTCATAATATACTAAAAAGAGTTATGATAATTTTAAACATAATAG
123 GCATAAAATGGGTAAGAAATGTCATAATATACTAAAAAGAGTTATAATAATTTTAAACATAATAG
*
17718815 AAAGTAAGAACAATCATAATAATATATTATTATAATG
188 AAAGTAAAAACAATCATAA-AATATATTATTATAATG
*
17718852 TAAATAATTATATTGGTAACTTAAAATTTCAATTAGTGTTTTCTAAATATTTAAGAAAAATAGCT
1 TAAATAATTATATTGGTAACTTAAAATTTCAATTA-T-TTTTCTAAATATATAA-AAAAATAGCT
* * *
17718917 AGAAATTTAAAAATAAATTGGTAATGTAAATAAGTAAATAGAAACATAAAATTAATGTCATTTAG
63 A-AAA-TTAAAAATAAATTGGTAATGTAAATAAGT-AA-AGAAATATAAAATTAGTATCATTTAG
** * *
17718982 CATAAAATGGGTAA-AAAGTGTTGTAATATATTAAGAAAGAGTTATAATCATTTTAAA-AGTAAT
124 CATAAAATGGGTAAGAAA-TGTCATAATATACTAA-AAAGAGTTATAATAATTTTAAACA-TAAT
* * * * * *
17719045 GGAAAGTAAAAATAATTATAAAAGATATTATTGTAAAG
186 AGAAAGTAAAAACAATCATAAAATATATTATTATAATG
* * * ** *
17719083 CAAATACTTATGTTGACAA-TGTAAAATTTTAATTAATTATTATTCTTGTAAATATATAAAAAAA
1 TAAATAATTATATTGGTAACT-TAAAATTTCAATT-A-T-TT-TTC---TAAATATATAAAAAAA
* * * * * *
17719147 -AGCTAAAATTAAAAGATAAATTGATGATGTAAATAAGT-GAGAAATGTAAAATTAGTATTAATT
58 TAGCTAAAATTAAAA-ATAAATTGGTAATGTAAATAAGTAAAGAAATATAAAATTAGTATCATTT
* ** * * *
17719210 GGTGTAAAATGGGTAAGAAATGTCATAATACACTAAAAAAGAGCTATAACAATTTTAAACATAAT
122 AGCATAAAATGGGTAAGAAATGTCATAATATACT-AAAAAGAGTTATAATAATTTTAAACATAAT
* *
17719275 AGAAAGTAAAAACAATCATAAAAATATATTATTACAATA
186 AGAAAGTAAAAACAATCAT-AAAATATATTATTATAATG
17719314 TAAATAATTAT
1 TAAATAATTAT
17719325 GATGACAATA
Statistics
Matches: 383, Mismatches: 66, Indels: 46
0.77 0.13 0.09
Matches are distributed among these distances:
226 5 0.01
227 2 0.01
228 4 0.01
229 34 0.09
230 101 0.26
231 139 0.36
232 51 0.13
233 27 0.07
234 5 0.01
235 5 0.01
236 10 0.03
ACGTcount: A:0.50, C:0.05, G:0.11, T:0.34
Consensus pattern (223 bp):
TAAATAATTATATTGGTAACTTAAAATTTCAATTATTTTTCTAAATATATAAAAAAATAGCTAAA
ATTAAAAATAAATTGGTAATGTAAATAAGTAAAGAAATATAAAATTAGTATCATTTAGCATAAAA
TGGGTAAGAAATGTCATAATATACTAAAAAGAGTTATAATAATTTTAAACATAATAGAAAGTAAA
AACAATCATAAAATATATTATTATAATG
Found at i:17719317 original size:21 final size:20
Alignment explanation
Indices: 17719286--17719339 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 20
17719276 GAAAGTAAAA
* *
17719286 ACAATCATAAAAATATATTATT
1 ACAAT-ATAAAAAT-TATGATG
17719308 ACAATATAAATAATTATGATG
1 ACAATATAAA-AATTATGATG
17719329 ACAATATAAAA
1 ACAATATAAAA
17719340 TTTTAACTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 1 0.03
21 20 0.69
22 8 0.28
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.31
Consensus pattern (20 bp):
ACAATATAAAAATTATGATG
Found at i:17721024 original size:239 final size:235
Alignment explanation
Indices: 17720579--17721384 Score: 662
Period size: 239 Copynumber: 3.4 Consensus size: 235
17720569 AGAATAAATA
* * * * *
17720579 TAAGAAAATATTATTGTAACATAAAAAATTAAATAGATAATGTAAACTTTTAATTGATTATTGTT
1 TAAGAAAATATTATTGTAATATAAATAATTAAATAGGTAATGTAAAATTTTAATTAATTATTGTT
* * * ** * *
17720644 TTTATAAATATATATATATATAATAACTAAAATTTAAAAAACAAATGGGTAATGTAAATAAGTGA
66 TTTGTAAATATATA-AGA-AAAATAACTAAAATTTAAAAAACAAATAAGTAACGTAAAGAAGTGA
** * * * *
17720709 GAAAAATGTAAAATTTGTATCAGTTGCCGTAAAATAGGTAAGAAGTGTCGTATCACATTATAAAA
129 GAAAAATGTAAAATTCATATCAGTTGCCGTAAAATAGATAAAAAGTGTCGAAACACATTATAAAA
* *
17720774 AGAGCTATAACAATTCTTAATGTAATGAAAAGTAAGAATAAC
194 AGAGCTATAACAATTCTAAATGTAAAGAAAAGTAAGAATAAC
* * ** *
17720816 TGGAAGAAAATATTATTATAATGTAAATAATTAAATAGGTAACATAAAATTTTAATTAATAATTG
1 T--AAGAAAATATTATTGTAATATAAATAATTAAATAGGTAATGTAAAATTTTAATTAATTATTG
*
17720881 TTTTTGTAAATATATAA-ACAAAATAACTAAAATTTAAAAAATAAATAAGTAACGTAAAGAAGTG
64 TTTTTGTAAATATATAAGA-AAAATAACTAAAATTTAAAAAACAAATAAGTAACGTAAAGAAGTG
* * *
17720945 AGAAAATTCTTAAAATTCATATCATTTGGCC-TAAAAT-GAATAAAAAGTGTTAC-AACACACAT
128 AGAAAAAT-GTAAAATTCATATCAGTT-GCCGTAAAATAG-ATAAAAAGTG-T-CGAA-ACACAT
* * *
17721007 TA-AGAAAA-AGTTATAACAATTCTAAATGTAAAGAAAGGTAAAAATAATC
187 TATA-AAAAGAGCTATAACAATTCTAAATGTAAAGAAAAGTAAGAATAA-C
* * * *
17721056 ATAAGAAGATATTATTGTAATATAAATAATTAAGTAAGCAATGT-AAATTTTAATTAATTATTG-
1 -TAAGAAAATATTATTGTAATATAAATAATTAAATAGGTAATGTAAAATTTTAATTAATTATTGT
* * * * * * *
17721119 TTTTGTTAATATATAAGAAAATTAACTAAAATTAAAAAAAAAAAACAGATAGGTAACATAAACAA
65 TTTTGTAAATATATAAGAAAAATAACTAAAATT-----TAAAAAACAAATAAGTAACGTAAAGAA
* * * * ** * ** *
17721184 GTGAGAATAAGTGTAAAATGCGTATCATTTGATGTAAAATAGGTAAAAAGCATC-ACAACACACT
125 GTGAGAA-AAATGTAAAATTCATATCAGTTGCCGTAAAATAGATAAAAAGTGTCGA-AACACATT
* * * * ** * *
17721248 A-AAATAGAGTTCTAACAATTCTAAATTTATTGGAATGTAAGAATAACC
188 ATAAAAAGAGCTATAACAATTCTAAATGTAAAGAAAAGTAAGAATAA-C
* * ** * * * * * *
17721296 ATACA-AAAATATTATTATAACATTCATATTTAAGTTGGTAACGTAAAGTTTTAATTAATTATTA
1 -TA-AGAAAATATTATTGTAATATAAATAATTAAATAGGTAATGTAAAATTTTAATTAATTATTG
* *
17721360 TTTATATAAATATATAAGAAAAATA
64 TTTTTGTAAATATATAAGAAAAATA
17721385 TATAATAAAT
Statistics
Matches: 460, Mismatches: 84, Indels: 45
0.78 0.14 0.08
Matches are distributed among these distances:
237 78 0.17
238 48 0.10
239 144 0.31
240 88 0.19
241 22 0.05
242 76 0.17
243 4 0.01
ACGTcount: A:0.50, C:0.06, G:0.11, T:0.32
Consensus pattern (235 bp):
TAAGAAAATATTATTGTAATATAAATAATTAAATAGGTAATGTAAAATTTTAATTAATTATTGTT
TTTGTAAATATATAAGAAAAATAACTAAAATTTAAAAAACAAATAAGTAACGTAAAGAAGTGAGA
AAAATGTAAAATTCATATCAGTTGCCGTAAAATAGATAAAAAGTGTCGAAACACATTATAAAAAG
AGCTATAACAATTCTAAATGTAAAGAAAAGTAAGAATAAC
Found at i:17734944 original size:13 final size:13
Alignment explanation
Indices: 17734926--17734950 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
17734916 TACTATATAG
17734926 TTTCAATTGTAAT
1 TTTCAATTGTAAT
17734939 TTTCAATTGTAA
1 TTTCAATTGTAA
17734951 CCATGACGCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.52
Consensus pattern (13 bp):
TTTCAATTGTAAT
Found at i:17736371 original size:14 final size:15
Alignment explanation
Indices: 17736337--17736370 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
17736327 TAGATTTGAG
17736337 AAAAATATAGTAGAA
1 AAAAATATAGTAGAA
* *
17736352 AAAAATATCGTATAA
1 AAAAATATAGTAGAA
17736367 AAAA
1 AAAA
17736371 TTTTAAGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.68, C:0.03, G:0.09, T:0.21
Consensus pattern (15 bp):
AAAAATATAGTAGAA
Found at i:17740455 original size:18 final size:18
Alignment explanation
Indices: 17740432--17740469 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
17740422 AAACTAAAAG
17740432 TTAAAACCAATTTAATCA
1 TTAAAACCAATTTAATCA
17740450 TTAAAACCAATTTAATCA
1 TTAAAACCAATTTAATCA
17740468 TT
1 TT
17740470 CTTATACATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (18 bp):
TTAAAACCAATTTAATCA
Found at i:17741113 original size:24 final size:24
Alignment explanation
Indices: 17741068--17741113 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
17741058 AATTCTTGAT
* *
17741068 TTTTTTTATTTTTAAATTAATTAA
1 TTTTTTTATCTTTAAATAAATTAA
17741092 TTTTTTTACTCTTTAAA-AAATT
1 TTTTTTTA-TCTTTAAATAAATT
17741114 TTGTAATCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (24 bp):
TTTTTTTATCTTTAAATAAATTAA
Found at i:17743466 original size:35 final size:34
Alignment explanation
Indices: 17743397--17743525 Score: 109
Period size: 35 Copynumber: 3.7 Consensus size: 34
17743387 CCCTAAATTG
* *
17743397 AAGAATAAAAATGATC-GAGACTAAATCTCA-AGTCA
1 AAGAATAAAAATGATCAG-GACT-GAGC-CACAGTCA
* * *
17743432 AAAAATAAAAATGACCAGGACTGAGCTACGAGTCA
1 AAGAATAAAAATGATCAGGACTGAGCCAC-AGTCA
* ** *
17743467 GAGAATAAAAATGATTGGGATTGAGCCACAGTCA
1 AAGAATAAAAATGATCAGGACTGAGCCACAGTCA
* *
17743501 AAGAATAAAGATGATCATGACTGAG
1 AAGAATAAAAATGATCAGGACTGAG
17743526 TTGTGAGTTA
Statistics
Matches: 73, Mismatches: 18, Indels: 7
0.74 0.18 0.07
Matches are distributed among these distances:
33 1 0.01
34 26 0.36
35 45 0.62
36 1 0.01
ACGTcount: A:0.47, C:0.13, G:0.21, T:0.19
Consensus pattern (34 bp):
AAGAATAAAAATGATCAGGACTGAGCCACAGTCA
Found at i:17743506 original size:34 final size:35
Alignment explanation
Indices: 17743427--17743525 Score: 110
Period size: 35 Copynumber: 2.9 Consensus size: 35
17743417 CTAAATCTCA
* * *
17743427 AGTCAAAAAATAAAAATGACCAGGACTGAGCTACG
1 AGTCAAAGAATAAAAATGATCAGGACTGAGCCACG
* ** *
17743462 AGTCAGAGAATAAAAATGATTGGGATTGAGCCAC-
1 AGTCAAAGAATAAAAATGATCAGGACTGAGCCACG
* *
17743496 AGTCAAAGAATAAAGATGATCATGACTGAG
1 AGTCAAAGAATAAAAATGATCAGGACTGAG
17743526 TTGTGAGTTA
Statistics
Matches: 51, Mismatches: 13, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
34 24 0.47
35 27 0.53
ACGTcount: A:0.45, C:0.13, G:0.23, T:0.18
Consensus pattern (35 bp):
AGTCAAAGAATAAAAATGATCAGGACTGAGCCACG
Found at i:17743585 original size:35 final size:35
Alignment explanation
Indices: 17743546--17743620 Score: 87
Period size: 35 Copynumber: 2.1 Consensus size: 35
17743536 GGTAATGAAG
**
17743546 ATGACCGAGACTAAGTTGTGAGTCAAAAAATAAAA
1 ATGACCGAGACTAAGTCATGAGTCAAAAAATAAAA
* * * * *
17743581 ATGACTGAGATTGAGTCATGAGTTAAGAAATAAAA
1 ATGACCGAGACTAAGTCATGAGTCAAAAAATAAAA
17743616 ATGAC
1 ATGAC
17743621 TGGAGATTGA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.47, C:0.09, G:0.21, T:0.23
Consensus pattern (35 bp):
ATGACCGAGACTAAGTCATGAGTCAAAAAATAAAA
Found at i:17743641 original size:36 final size:33
Alignment explanation
Indices: 17743573--17743667 Score: 93
Period size: 36 Copynumber: 2.7 Consensus size: 33
17743563 GTGAGTCAAA
*
17743573 AAATAAAAATGACTGAGATTGAGTCATGAGTTAAG
1 AAATAAAAATGACTGAGATTGAGGCA-GAGTT-AG
17743608 AAATAAAAATGACTGGAGATTGAATGGCA-AGTTAG
1 AAATAAAAATGACT-GAGATTG-A-GGCAGAGTTAG
* *
17743643 AGAATAAAGATGAACTGAGACTGAG
1 A-AATAAAAATG-ACTGAGATTGAG
17743668 CCACAAGTTA
Statistics
Matches: 52, Mismatches: 3, Indels: 11
0.79 0.05 0.17
Matches are distributed among these distances:
34 1 0.02
35 18 0.35
36 26 0.50
37 4 0.08
38 3 0.06
ACGTcount: A:0.46, C:0.06, G:0.25, T:0.22
Consensus pattern (33 bp):
AAATAAAAATGACTGAGATTGAGGCAGAGTTAG
Found at i:17744903 original size:17 final size:16
Alignment explanation
Indices: 17744859--17744903 Score: 54
Period size: 17 Copynumber: 2.8 Consensus size: 16
17744849 TTTTGTTTTG
17744859 TTTTTTATTTTTTATC
1 TTTTTTATTTTTTATC
* * *
17744875 TTTTCCTCTTTTATATC
1 TTTT-TTATTTTTTATC
17744892 TTTTTTATTTTT
1 TTTTTTATTTTT
17744904 GCTTTTTATT
Statistics
Matches: 22, Mismatches: 6, Indels: 2
0.73 0.20 0.07
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTTTATTTTTTATC
Found at i:17755531 original size:12 final size:10
Alignment explanation
Indices: 17755506--17755561 Score: 51
Period size: 10 Copynumber: 5.5 Consensus size: 10
17755496 TAAACAATAC
17755506 AAAAATTCTA
1 AAAAATTCTA
*
17755516 AAAAATTCTTT
1 AAAAATTC-TA
**
17755527 AAAAA-TAAA
1 AAAAATTCTA
*
17755536 AAAAATTTTA
1 AAAAATTCTA
17755546 GAAAAATTCTA
1 -AAAAATTCTA
17755557 AAAAA
1 AAAAA
17755562 AATTCAAAAC
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
9 5 0.14
10 16 0.44
11 15 0.42
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.29
Consensus pattern (10 bp):
AAAAATTCTA
Found at i:17755561 original size:30 final size:28
Alignment explanation
Indices: 17755488--17755561 Score: 78
Period size: 30 Copynumber: 2.6 Consensus size: 28
17755478 AAAATTAAAA
* *
17755488 AAAAAATT-TAAACAATACAAAAATTCT
1 AAAAAATTCTAAAAAATAAAAAAATTCT
* *
17755515 AAAAAATTCTTTAAAAATAAAAAAAATTTT
1 AAAAAATTC-TAAAAAAT-AAAAAAATTCT
17755545 AGAAAAATTCTAAAAAA
1 A-AAAAATTCTAAAAAA
17755562 AATTCAAAAC
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
27 8 0.21
29 6 0.16
30 16 0.42
31 8 0.21
ACGTcount: A:0.65, C:0.07, G:0.01, T:0.27
Consensus pattern (28 bp):
AAAAAATTCTAAAAAATAAAAAAATTCT
Found at i:17756763 original size:11 final size:10
Alignment explanation
Indices: 17756748--17756789 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
17756738 AATTTTTATT
17756748 ATTTTTAAAA
1 ATTTTTAAAA
*
17756758 AGTTTTAAAA
1 ATTTTTAAAA
17756768 ATTTTTTAAAA
1 A-TTTTTAAAA
*
17756779 ATTTTCAAAA
1 ATTTTTAAAA
17756789 A
1 A
17756790 AAAGGACCGG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 19 0.68
11 9 0.32
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (10 bp):
ATTTTTAAAA
Found at i:17756763 original size:19 final size:19
Alignment explanation
Indices: 17756726--17756764 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
17756716 TAATTTTTAG
** *
17756726 ATTATTTTTTGAAATTTTT
1 ATTATTTTTAAAAAGTTTT
17756745 ATTATTTTTAAAAAGTTTT
1 ATTATTTTTAAAAAGTTTT
17756764 A
1 A
17756765 AAAATTTTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (19 bp):
ATTATTTTTAAAAAGTTTT
Found at i:17756906 original size:10 final size:10
Alignment explanation
Indices: 17756893--17757031 Score: 65
Period size: 10 Copynumber: 14.1 Consensus size: 10
17756883 TTTTGAATCA
17756893 TTTTAGAATTT
1 TTTTAGAA-TT
17756904 TTTTA-AATTT
1 TTTTAGAA-TT
* *
17756914 TTTTAAAAAT
1 TTTTAGAATT
**
17756924 TTTTAGAAAAA
1 TTTTAG-AATT
*
17756935 TTTTA-AAAT
1 TTTTAGAATT
*
17756944 ATTTAGAATT
1 TTTTAGAATT
*
17756954 TTTT-TAATT
1 TTTTAGAATT
* * **
17756963 TTTAAAAAAA
1 TTTTAGAATT
17756973 TTTT-GAATT
1 TTTTAGAATT
* *
17756982 TTTAAGAAAT
1 TTTTAGAATT
*
17756992 TTTCA-AATT
1 TTTTAGAATT
17757001 TTTTAGAATT
1 TTTTAGAATT
*
17757011 TCTTTA-TATT
1 T-TTTAGAATT
17757021 TTTTAGAATT
1 TTTTAGAATT
17757031 T
1 T
17757032 ATCTTTTAAT
Statistics
Matches: 97, Mismatches: 23, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
9 30 0.31
10 48 0.49
11 19 0.20
ACGTcount: A:0.37, C:0.01, G:0.05, T:0.56
Consensus pattern (10 bp):
TTTTAGAATT
Found at i:17756916 original size:20 final size:20
Alignment explanation
Indices: 17756902--17757031 Score: 79
Period size: 20 Copynumber: 6.7 Consensus size: 20
17756892 ATTTTAGAAT
17756902 TTTTTTA-AATTTTTTTAAAA
1 TTTTTTAGAATTTTTTT-AAA
* ***
17756922 ATTTTTAGAAAAATTTTAAA
1 TTTTTTAGAATTTTTTTAAA
* *
17756942 ATATTTAGAATTTTTTT-AA
1 TTTTTTAGAATTTTTTTAAA
* *** *
17756961 -TTTTTAAAAAAATTTTGAA
1 TTTTTTAGAATTTTTTTAAA
* * *
17756980 TTTTTAAGAA-ATTTTCAAA
1 TTTTTTAGAATTTTTTTAAA
* *
17756999 TTTTTTAGAATTTCTTTATA
1 TTTTTTAGAATTTTTTTAAA
17757019 TTTTTTAGAATTT
1 TTTTTTAGAATTT
17757032 ATCTTTTAAT
Statistics
Matches: 83, Mismatches: 23, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
18 11 0.13
19 19 0.23
20 47 0.57
21 6 0.07
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTTTTAGAATTTTTTTAAA
Found at i:17757001 original size:38 final size:38
Alignment explanation
Indices: 17756920--17757003 Score: 98
Period size: 38 Copynumber: 2.2 Consensus size: 38
17756910 ATTTTTTTAA
* * *
17756920 AAATTTTTAGAAAAATTTTAAAATATTTAGAATTTTTT
1 AAATTTTTAAAAAAATTTTAAAATATTTAGAAATTTTC
* * *
17756958 TAATTTTTAAAAAAATTTT-GAATTTTTAAGAAATTTTC
1 AAATTTTTAAAAAAATTTTAAAATATTT-AGAAATTTTC
17756996 AAATTTTT
1 AAATTTTT
17757004 TAGAATTTCT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
37 6 0.16
38 32 0.84
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.51
Consensus pattern (38 bp):
AAATTTTTAAAAAAATTTTAAAATATTTAGAAATTTTC
Found at i:17761461 original size:22 final size:20
Alignment explanation
Indices: 17761434--17761481 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 20
17761424 ATAAAAATAA
*
17761434 ATATATAATGTTTTTTTAATTT
1 ATATATAA-ATTTTTTT-ATTT
17761456 ATATATAAATTTTTTTATTT
1 ATATATAAATTTTTTTATTT
*
17761476 TTATAT
1 ATATAT
17761482 CGTACCATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 9 0.38
21 7 0.29
22 8 0.33
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (20 bp):
ATATATAAATTTTTTTATTT
Found at i:17765408 original size:20 final size:20
Alignment explanation
Indices: 17765385--17765426 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
17765375 AGAAAATATG
17765385 TTTG-ATACATAAAATGAAAA
1 TTTGTATACA-AAAATGAAAA
* *
17765405 TTTGTTTTCAAAAATGAAAA
1 TTTGTATACAAAAATGAAAA
17765425 TT
1 TT
17765427 GTGAAAATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 16 0.84
21 3 0.16
ACGTcount: A:0.48, C:0.05, G:0.10, T:0.38
Consensus pattern (20 bp):
TTTGTATACAAAAATGAAAA
Found at i:17784018 original size:34 final size:34
Alignment explanation
Indices: 17783970--17784075 Score: 110
Period size: 33 Copynumber: 3.1 Consensus size: 34
17783960 AAATAAAAAA
17783970 TATTTTTATTATAATAAGATAAAACTTATTTGCTT
1 TATTTTT-TTATAATAAGATAAAACTTATTTGCTT
*
17784005 TATTTTTTTATAATGAA-A-AAAACTCATTTGCTT
1 TATTTTTTTATAAT-AAGATAAAACTTATTTGCTT
** * *
17784038 TA-TTACTTATAATATGATAAAATTTATTTTGTCTT
1 TATTTTTTTATAATAAGATAAAACTTA-TTTG-CTT
17784073 TAT
1 TAT
17784076 ACAAAATAAT
Statistics
Matches: 59, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
31 1 0.02
32 10 0.17
33 22 0.37
34 12 0.20
35 14 0.24
ACGTcount: A:0.36, C:0.07, G:0.06, T:0.52
Consensus pattern (34 bp):
TATTTTTTTATAATAAGATAAAACTTATTTGCTT
Found at i:17785214 original size:59 final size:56
Alignment explanation
Indices: 17785125--17785590 Score: 585
Period size: 59 Copynumber: 7.8 Consensus size: 56
17785115 TTTTTTAGGA
17785125 AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTGGAAATTTCGATTT-TCAAGG
1 AAAATTGATACTTTCAAC-TTTTCCCAAAAATATTTTTTGGAAATTT--ATTTCT-AAGG
*
17785184 AAAATTGATACTTTCAACTTTTCCTCAAAAACCCT-TTTTTTGAAAATTTATTTCTAAGG
1 AAAATTGATACTTTCAACTTTTCC-CAAAAA---TATTTTTTGGAAATTTATTTCTAAGG
*
17785243 AAAATTGATATTTTCAACTTTTCCCCAAAAATATTTTTTTTTTGGAAATTTATTTTTCTTTTAAG
1 AAAATTGATACTTTCAACTTTT-CCCAAAAATA----TTTTTTGGAAATTTA--TTTC---TAAG
17785308 G
56 G
17785309 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGG
1 AAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTGGAAATTTATTTCTAAGG
* * *
17785366 AAAATTGATACTTTCAACTTTTCCCTAAAAATTTTTTTTTTTTGAAATTTATTTCTGAGG
1 AAAATTGATACTTTCAACTTTTCCC-AAAAA---TATTTTTTGGAAATTTATTTCTAAGG
17785426 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGG
1 AAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTGGAAATTTATTTCTAAGG
* *
17785483 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAAATTTATTTCTGAGG
1 AAAATTGATACTTTCAACTTTTCCC-AAAAATA--TTTTTTGGAAATTTATTTCTAAGG
17785542 AAAATTGATACTTTCAACTTTTCCCTAAAAATATATTTTTTGGAAATTT
1 AAAATTGATACTTTCAACTTTTCCC--AAAA-ATATTTTTTGGAAATTT
17785591 TTTATTTTTA
Statistics
Matches: 367, Mismatches: 14, Indels: 52
0.85 0.03 0.12
Matches are distributed among these distances:
56 7 0.02
57 84 0.23
58 6 0.02
59 119 0.32
60 61 0.17
61 33 0.09
62 16 0.04
63 4 0.01
66 37 0.10
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.45
Consensus pattern (56 bp):
AAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTGGAAATTTATTTCTAAGG
Found at i:17785473 original size:117 final size:116
Alignment explanation
Indices: 17785125--17785590 Score: 647
Period size: 117 Copynumber: 3.9 Consensus size: 116
17785115 TTTTTTAGGA
*
17785125 AAAATTGATACTTTCAACTTTTTCCC-AAAAA--TATTTTTTGGAAATTTCGATTT-TCAAGGAA
1 AAAATTGATACTTTCAAC-TTTTCCCTAAAAATTTTTTTTTTGGAAATTT--ATTTCT-AAGGAA
* *
17785186 AATTGATACTTTCAACTTTTCCTCAAAAACCCT-TTTTTTGAAAATTTATTTCTAAGG
62 AATTGATACTTTCAACTTTTCCCCAAAAA---TATTTTTTGGAAATTTATTTCTAAGG
* *
17785243 AAAATTGATATTTTCAACTTTTCCCCAAAAATATTTTTTTTTTGGAAATTTATTTTTCTTTTAAG
1 AAAATTGATACTTTCAACTTTT-CCCTAAAA-ATTTTTTTTTTGGAAATTTA--TTTC---TAAG
17785308 GAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGG
59 GAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGG
* *
17785366 AAAATTGATACTTTCAACTTTTCCCTAAAAATTTTTTTTTTTTGAAATTTATTTCTGAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCCCTAAAAA-TTTTTTTTTTGGAAATTTATTTCTAAGGAAAAT
17785431 TGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGG
65 TGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGG
*
17785483 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTT-GAAATTTATTTCTGAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCCCTAAAAAT-TTTTTTTTTGGAAATTTATTTCTAAGGAAAAT
*
17785547 TGATACTTTCAACTTTTCCCTAAAAATATATTTTTTGGAAATTT
65 TGATACTTTCAACTTTTCCC-CAAAA-ATATTTTTTGGAAATTT
17785591 TTTATTTTTA
Statistics
Matches: 323, Mismatches: 9, Indels: 32
0.89 0.02 0.09
Matches are distributed among these distances:
116 43 0.13
117 109 0.34
118 37 0.11
119 4 0.01
120 6 0.02
121 1 0.00
122 44 0.14
123 44 0.14
125 34 0.11
126 1 0.00
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.45
Consensus pattern (116 bp):
AAAATTGATACTTTCAACTTTTCCCTAAAAATTTTTTTTTTGGAAATTTATTTCTAAGGAAAATT
GATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGG
Found at i:17785514 original size:27 final size:27
Alignment explanation
Indices: 17785483--17785573 Score: 65
Period size: 27 Copynumber: 3.2 Consensus size: 27
17785473 ATTTCTAAGG
17785483 AAAATTGATACTTTCAACTTTTCCCTA
1 AAAATTGATACTTTCAACTTTTCCCTA
** ** * * **
17785510 AAAATATTTTTTTTTGAAATTTATTTCTGA
1 AAAAT-TGATACTTTCAACTTT-TCCCT-A
17785540 GGAAAATTGATACTTTCAACTTTTCCCTA
1 --AAAATTGATACTTTCAACTTTTCCCTA
17785569 AAAAT
1 AAAAT
17785574 ATATTTTTTG
Statistics
Matches: 43, Mismatches: 16, Indels: 10
0.62 0.23 0.14
Matches are distributed among these distances:
27 10 0.23
28 10 0.23
29 4 0.09
30 4 0.09
31 10 0.23
32 5 0.12
ACGTcount: A:0.35, C:0.14, G:0.07, T:0.44
Consensus pattern (27 bp):
AAAATTGATACTTTCAACTTTTCCCTA
Found at i:17785652 original size:10 final size:10
Alignment explanation
Indices: 17785604--17785646 Score: 54
Period size: 10 Copynumber: 4.3 Consensus size: 10
17785594 ATTTTTATTT
17785604 AAATAAA-ATA
1 AAATAAATA-A
17785614 AAAT-AATAA
1 AAATAAATAA
17785623 ATAATAAATAA
1 A-AATAAATAA
17785634 AAATAAATAA
1 AAATAAATAA
17785644 AAA
1 AAA
17785647 AGAATATTAC
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
9 4 0.13
10 20 0.67
11 6 0.20
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (10 bp):
AAATAAATAA
Found at i:17785796 original size:13 final size:13
Alignment explanation
Indices: 17785789--17785813 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
17785779 CGGCTTGGCG
17785789 GCTTGGCTCGGCA
1 GCTTGGCTCGGCA
17785802 GCTTGGCTCGGC
1 GCTTGGCTCGGC
17785814 TCGGAGGGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.32, G:0.40, T:0.24
Consensus pattern (13 bp):
GCTTGGCTCGGCA
Found at i:17786005 original size:18 final size:18
Alignment explanation
Indices: 17785970--17786013 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
17785960 CGGCAGAACC
17785970 CTTCTCCTTTCTCTCTCT
1 CTTCTCCTTTCTCTCTCT
* *
17785988 CTTCTTCCTTTTTCCTCTCC
1 CTTC-TCCTTTCT-CTCTCT
17786008 CTTCTC
1 CTTCTC
17786014 TCTAAAGACT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 4 0.18
19 9 0.41
20 9 0.41
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (18 bp):
CTTCTCCTTTCTCTCTCT
Found at i:17786011 original size:20 final size:19
Alignment explanation
Indices: 17785968--17786012 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
17785958 TTCGGCAGAA
17785968 CCCTTC-TCCTTTCTCTCT
1 CCCTTCTTCCTTTCTCTCT
* *
17785986 CTCTTCTTCCTTTTTCCTCT
1 CCCTTCTTCCTTTCT-CTCT
17786006 CCCTTCT
1 CCCTTCT
17786013 CTCTAAAGAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 5 0.23
19 7 0.32
20 10 0.45
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (19 bp):
CCCTTCTTCCTTTCTCTCT
Found at i:17786632 original size:14 final size:17
Alignment explanation
Indices: 17786600--17786636 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 17
17786590 TAGATAAGTA
17786600 AAAATACAAAAATGAAT
1 AAAATACAAAAATGAAT
17786617 AAAATA-AAAAA-G-AT
1 AAAATACAAAAATGAAT
17786631 AAAATA
1 AAAATA
17786637 TATATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 8 0.40
15 1 0.05
16 5 0.25
17 6 0.30
ACGTcount: A:0.76, C:0.03, G:0.05, T:0.16
Consensus pattern (17 bp):
AAAATACAAAAATGAAT
Found at i:17786746 original size:16 final size:16
Alignment explanation
Indices: 17786661--17786747 Score: 51
Period size: 16 Copynumber: 5.6 Consensus size: 16
17786651 TATTAGTAAT
*
17786661 AATACATAAATATTAAC
1 AATACATAAATAAT-AC
* *
17786678 AAAAAATAAATAA-AC
1 AATACATAAATAATAC
* * *
17786693 AAATATATACAT-ATATT
1 -AATACATAAATAATA-C
17786710 AATACAT-AATAAT--
1 AATACATAAATAATAC
17786723 AATA-ATAAATAATAC
1 AATACATAAATAATAC
17786738 AATACATAAA
1 AATACATAAA
17786748 ATACAAAAGA
Statistics
Matches: 53, Mismatches: 9, Indels: 17
0.67 0.11 0.22
Matches are distributed among these distances:
12 2 0.04
13 10 0.19
15 9 0.17
16 22 0.42
17 10 0.19
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (16 bp):
AATACATAAATAATAC
Found at i:17786834 original size:20 final size:21
Alignment explanation
Indices: 17786809--17786847 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
17786799 CTTACCCATT
17786809 TGGGCCAGG-CCCAATTGATC
1 TGGGCCAGGACCCAATTGATC
17786829 TGGGCCAGGACCCAATTGA
1 TGGGCCAGGACCCAATTGA
17786848 GTGTCTACAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.23, C:0.28, G:0.31, T:0.18
Consensus pattern (21 bp):
TGGGCCAGGACCCAATTGATC
Found at i:17786953 original size:1 final size:1
Alignment explanation
Indices: 17786949--17787004 Score: 76
Period size: 1 Copynumber: 56.0 Consensus size: 1
17786939 CATTTTTTGG
* * * *
17786949 TTTTTTTGTTTTTTTTTTGTTTTTTGTTTTTTTGTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
17787005 ACCAAAGCTC
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
1 47 1.00
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (1 bp):
T
Found at i:17786954 original size:8 final size:7
Alignment explanation
Indices: 17786941--17787004 Score: 66
Period size: 6 Copynumber: 9.6 Consensus size: 7
17786931 AACATTGTCA
17786941 TTTTTTGG
1 TTTTTT-G
17786949 TTTTTT-
1 TTTTTTG
*
17786955 TGTTTT-
1 TTTTTTG
17786961 TTTTTTG
1 TTTTTTG
17786968 TTTTTTG
1 TTTTTTG
17786975 TTTTTTTG
1 -TTTTTTG
17786983 TTTTTT-
1 TTTTTTG
17786989 TTTTTT-
1 TTTTTTG
17786995 TTTTTT-
1 TTTTTTG
17787001 TTTT
1 TTTT
17787005 ACCAAAGCTC
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
6 26 0.50
7 13 0.25
8 13 0.25
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (7 bp):
TTTTTTG
Found at i:17786978 original size:26 final size:25
Alignment explanation
Indices: 17786941--17787004 Score: 103
Period size: 26 Copynumber: 2.6 Consensus size: 25
17786931 AACATTGTCA
*
17786941 TTTTTTGGTTTTTTTGTTTTTTTTT
1 TTTTTTTGTTTTTTTGTTTTTTTTT
17786966 TGTTTTTTGTTTTTTTGTTTTTTTTT
1 T-TTTTTTGTTTTTTTGTTTTTTTTT
17786992 TTTTTTT-TTTTTT
1 TTTTTTTGTTTTTT
17787005 ACCAAAGCTC
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
24 6 0.16
25 7 0.19
26 24 0.65
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (25 bp):
TTTTTTTGTTTTTTTGTTTTTTTTT
Found at i:17787107 original size:42 final size:41
Alignment explanation
Indices: 17787011--17787501 Score: 689
Period size: 42 Copynumber: 12.0 Consensus size: 41
17787001 TTTTACCAAA
* * *
17787011 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAA-GTAAATT
*
17787054 GCTCCTTTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATT
17787096 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
*
17787137 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATT
*
17787179 GCTCCTCTAAACAGAGGTACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
17787220 GCTCCTCTAAACAGAGGCA--ACGAAC-TTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAGTAAATT
*
17787259 GCTCCTCTAAACAGAGGCA--ACGAACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAGTAAATT
*
17787299 GCTCCTCTAAACAGAGGTACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATT
*
17787341 GCTCCTCTAAACAGAGGCA--ACGAACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAGTAAATT
*
17787381 GCTCCTCTAAACAGAGGTACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATT
*
17787423 GCTCCTCTAAACAGAGGCA--ACGAACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAGTAAATT
* *
17787463 GCTCCTCTAAACAGAGGTA--ACGAACTTTGAAAAGTAAAT
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAGTAAAT
17787502 ACTCCTAGAC
Statistics
Matches: 417, Mismatches: 19, Indels: 27
0.90 0.04 0.06
Matches are distributed among these distances:
39 42 0.10
40 115 0.28
41 97 0.23
42 132 0.32
43 27 0.06
44 4 0.01
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.23
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
Found at i:17787158 original size:83 final size:82
Alignment explanation
Indices: 17787011--17787501 Score: 725
Period size: 82 Copynumber: 6.0 Consensus size: 82
17787001 TTTTACCAAA
* *
17787011 GCTCCTCTAAACAGAGGCTCAACG-ACTTTGAGAAACATAAATTGCTCCTTTAAACAGAGGCACC
1 GCTCCTCTAAACAGAGG--CAACGAACTTTGA-AAA-GTAAATTGCTCCTCTAAACAGAGGCACC
17787075 ACGACTTTTGG-AAAGTAAATT
62 ACGAC-TTTGGAAAAGTAAATT
*
17787096 GCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCA--ACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
17787160 GACTTTGGAAAAATAAATT
64 GACTTTGGAAAAGTAAATT
* *
17787179 GCTCCTCTAAACAGAGGTACCACG-ACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCA--AC
1 GCTCCTCTAAACAGAGG--CAACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
17787241 GAAC-TTGG-AAAGTAAATT
64 G-ACTTTGGAAAAGTAAATT
*
17787259 GCTCCTCTAAACAGAGGCAACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGTACCACGA
1 GCTCCTCTAAACAGAGGCAACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGA
17787324 CTTTGGAAAAGTAAATT
66 CTTTGGAAAAGTAAATT
*
17787341 GCTCCTCTAAACAGAGGCAACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGTACCACGA
1 GCTCCTCTAAACAGAGGCAACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGA
17787406 CTTTGGAAAAGTAAATT
66 CTTTGGAAAAGTAAATT
*
17787423 GCTCCTCTAAACAGAGGCAACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGTA--ACGA
1 GCTCCTCTAAACAGAGGCAACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG-
17787486 ACTTT-GAAAAGTAAAT
65 ACTTTGGAAAAGTAAAT
17787502 ACTCCTAGAC
Statistics
Matches: 385, Mismatches: 9, Indels: 29
0.91 0.02 0.07
Matches are distributed among these distances:
78 4 0.01
79 34 0.09
80 42 0.11
81 19 0.05
82 158 0.41
83 98 0.25
84 3 0.01
85 27 0.07
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.23
Consensus pattern (82 bp):
GCTCCTCTAAACAGAGGCAACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGA
CTTTGGAAAAGTAAATT
Found at i:17788778 original size:13 final size:12
Alignment explanation
Indices: 17788760--17788817 Score: 53
Period size: 12 Copynumber: 4.7 Consensus size: 12
17788750 TTTTCCTTCA
17788760 TTCTTTCTTTTTT
1 TTCTTT-TTTTTT
*
17788773 TTCTTTTTTTTG
1 TTCTTTTTTTTT
* ** *
17788785 TCCTTTTTCATC
1 TTCTTTTTTTTT
17788797 TTCTTTTTTTTT
1 TTCTTTTTTTTT
17788809 TTCATTTTT
1 TTC-TTTTT
17788818 CATCCATTAT
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
12 24 0.69
13 11 0.31
ACGTcount: A:0.03, C:0.16, G:0.02, T:0.79
Consensus pattern (12 bp):
TTCTTTTTTTTT
Found at i:17790259 original size:60 final size:58
Alignment explanation
Indices: 17790015--17790350 Score: 464
Period size: 59 Copynumber: 5.7 Consensus size: 58
17790005 TTTTGTAGGA
* *
17790015 AAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTGGAAATTTCGATTT-TCAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAATTT--ATTTCT-AAGG
* ***
17790074 AAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTGAAAATTTATTTCTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTG-AAATTTATTTCTAAGG
* *
17790133 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTCGAAATTTATTTCTGAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT-GAAATTTATTTCTAAGG
* *
17790192 AAAATTGATAGTTTCAACTTTTCCCCAAAAATATTTTTTTTTTGAAATTTATTTCTGAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTTTGAAATTTATTTCTAAGG
17790252 AAAATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTGAAAATTTATTTCTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTG-AAATTTATTTCTAAGG
*
17790309 AAAATTGATACTTTCAACTTTTCCCTAAAAATATATTTTTTT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATAT-TTTTTTT
17790351 TGGAATTTTT
Statistics
Matches: 251, Mismatches: 16, Indels: 19
0.88 0.06 0.07
Matches are distributed among these distances:
56 7 0.03
57 47 0.19
59 119 0.47
60 64 0.25
61 14 0.06
ACGTcount: A:0.34, C:0.14, G:0.08, T:0.44
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAATTTATTTCTAAGG
Found at i:17790479 original size:27 final size:26
Alignment explanation
Indices: 17790427--17790500 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 26
17790417 AACCTAATCT
17790427 AATAAATAAAAATTAAAATAAA-CAAAGA
1 AATAAAT-AAAA-TAAAA-AAATCAAAGA
17790455 AATAAATAAAATAAAAAAATTCAAAGA
1 AATAAATAAAATAAAAAAA-TCAAAGA
*
17790482 AAGAAA-AAAA-AAAAAAATC
1 AATAAATAAAATAAAAAAATC
17790501 TGGAGCGGCT
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
24 2 0.05
25 10 0.23
26 9 0.21
27 15 0.35
28 7 0.16
ACGTcount: A:0.77, C:0.04, G:0.04, T:0.15
Consensus pattern (26 bp):
AATAAATAAAATAAAAAAATCAAAGA
Found at i:17790528 original size:5 final size:5
Alignment explanation
Indices: 17790518--17790543 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
17790508 GCTCGGATCG
17790518 CGGCT CGGCT CGGCT CGGCT CGGCT C
1 CGGCT CGGCT CGGCT CGGCT CGGCT C
17790544 AAGGCAGGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.42, G:0.38, T:0.19
Consensus pattern (5 bp):
CGGCT
Found at i:17790847 original size:20 final size:20
Alignment explanation
Indices: 17790822--17790859 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
17790812 GAACACCGGT
*
17790822 GCCGGATTCTGAAAATTTTC
1 GCCGGAATCTGAAAATTTTC
*
17790842 GCCGGAATCTGGAAATTT
1 GCCGGAATCTGAAAATTT
17790860 CACCGGAAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (20 bp):
GCCGGAATCTGAAAATTTTC
Found at i:17790865 original size:19 final size:20
Alignment explanation
Indices: 17790823--17790867 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
17790813 AACACCGGTG
* *
17790823 CCGGATTCTGAAAATTTTCG
1 CCGGAATCTGAAAATTTTCA
*
17790843 CCGGAATCTGGAAA-TTTCA
1 CCGGAATCTGAAAATTTTCA
17790862 CCGGAA
1 CCGGAA
17790868 GTTGGCCGGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (20 bp):
CCGGAATCTGAAAATTTTCA
Found at i:17790978 original size:19 final size:19
Alignment explanation
Indices: 17790954--17791000 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
17790944 GGAATTTTCA
17790954 TCGAAAAATTCAAACTTCG
1 TCGAAAAATTCAAACTTCG
17790973 TCGAAAAATTCAAACTTCG
1 TCGAAAAATTCAAACTTCG
*
17790992 -CCAAAAATT
1 TCGAAAAATT
17791001 TCTAAAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
18 8 0.30
19 19 0.70
ACGTcount: A:0.45, C:0.21, G:0.09, T:0.26
Consensus pattern (19 bp):
TCGAAAAATTCAAACTTCG
Found at i:17791468 original size:12 final size:13
Alignment explanation
Indices: 17791419--17791482 Score: 50
Period size: 12 Copynumber: 5.4 Consensus size: 13
17791409 AAATCTAATC
17791419 TAATA-AAATAAA
1 TAATATAAATAAA
17791431 TAA-ATAAATAAA
1 TAATATAAATAAA
*
17791443 T-ATATACAT-AA
1 TAATATAAATAAA
*
17791454 TAATA-AAATACA
1 TAATATAAATAAA
* *
17791466 TAAAATACA-AAA
1 TAATATAAATAAA
17791478 TAATA
1 TAATA
17791483 CAGGACAAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
11 8 0.20
12 30 0.75
13 2 0.05
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.27
Consensus pattern (13 bp):
TAATATAAATAAA
Found at i:17794750 original size:59 final size:56
Alignment explanation
Indices: 17794672--17795129 Score: 582
Period size: 59 Copynumber: 7.9 Consensus size: 56
17794662 TTTTTTTTAG
17794672 GGAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTGAAAATTTTGATTT-TCAA
1 GGAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTG-AAA-TTT-ATTTCT-AA
17794731 GGAAAATTGATACTTTCAAC-TTTTCCTCAAAAACCCT-TTTTTTGAAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTTCC-CAAAAA---TATTTTTTG-AAATTTATTTCTAA
* *
17794790 GAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTT-GAAATTTATTTCTAA
* * *
17794847 GGAAAATTGATACTTTCAACTTTTTCCTAAAAATATTTTTTTTTTAAATTTATTTCTGA
1 GGAAAATTGATACTTTCAACTTTTTCCCAAAAATA---TTTTTTGAAATTTATTTCTAA
* *
17794906 GAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTT-GAAATTTATTTCTAA
*
17794963 GGAAAATTGATACTTTCAAC-TTTTCCCTAAAAATATTTTTTTTTGAAATTTATTTCTGA
1 GGAAAATTGATACTTTCAACTTTTTCCC-AAAAATA---TTTTTTGAAATTTATTTCTAA
* * *
17795022 GGAAAATTGATACTTTCAACTTTTCCCCAATAATATTTTTTGGAATTTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTT-GAAATTTATTTCTAA
*
17795079 GGAAAATTGATACTTTCAACTTTTTCCTAAAAATATATTTTTTTGAAATTT
1 GGAAAATTGATACTTTCAACTTTTTCC-CAAAA-ATA-TTTTTTGAAATTT
17795130 TTTATTTTTA
Statistics
Matches: 355, Mismatches: 23, Indels: 42
0.85 0.05 0.10
Matches are distributed among these distances:
56 19 0.05
57 130 0.37
58 10 0.03
59 151 0.43
60 33 0.09
61 11 0.03
62 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (56 bp):
GGAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTGAAATTTATTTCTAA
Found at i:17794909 original size:116 final size:116
Alignment explanation
Indices: 17794674--17795129 Score: 738
Period size: 116 Copynumber: 3.9 Consensus size: 116
17794664 TTTTTTAGGG
* *
17794674 AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTGAAAATTTTGATTT-TCAAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAA-TTT-ATTTCT-AAGGAAAAT
*** *
17794738 TGATACTTTCAAC-TTTTCCTCAAAAA-CCCTTTTTTTGAAAATTTATTTCTAAGA
63 TGATACTTTCAACTTTTTCCT-AAAAATATTTTTTTTTG-AAATTTATTTCTGAGA
17794792 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAAAATTGA
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAAAATTGA
*
17794857 TACTTTCAACTTTTTCCTAAAAATATTTTTTTTTTAAATTTATTTCTGAGA
66 TACTTTCAACTTTTTCCTAAAAATATTTTTTTTTGAAATTTATTTCTGAGA
17794908 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAAAATTGA
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAAAATTGA
* *
17794973 TACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAAATTTATTTCTGAGG
66 TACTTTCAACTTTTTCCTAAAAATATTTTTTTTTGAAATTTATTTCTGAGA
* *
17795024 AAAATTGATACTTTCAACTTTTCCCCAATAATATTTTTTGGAATTTTATTTCTAAGGAAAATTGA
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAAAATTGA
*
17795089 TACTTTCAACTTTTTCCTAAAAATATATTTTTTTGAAATTT
66 TACTTTCAACTTTTTCCTAAAAATATTTTTTTTTGAAATTT
17795130 TTTATTTTTA
Statistics
Matches: 321, Mismatches: 14, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
116 261 0.81
117 18 0.06
118 42 0.13
ACGTcount: A:0.34, C:0.13, G:0.07, T:0.45
Consensus pattern (116 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAAAATTGA
TACTTTCAACTTTTTCCTAAAAATATTTTTTTTTGAAATTTATTTCTGAGA
Found at i:17795190 original size:23 final size:24
Alignment explanation
Indices: 17795142--17795190 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
17795132 TATTTTTATT
* *
17795142 TAAAGAAAATAAAATAATAAATAA
1 TAAAGAAAATAAAATAAAAAAGAA
*
17795166 TAAATAAAAT-AAATAAAAAAGAA
1 TAAAGAAAATAAAATAAAAAAGAA
17795189 TA
1 TA
17795191 TTACATAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 13 0.59
24 9 0.41
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (24 bp):
TAAAGAAAATAAAATAAAAAAGAA
Found at i:17795229 original size:16 final size:16
Alignment explanation
Indices: 17795157--17795251 Score: 59
Period size: 16 Copynumber: 5.8 Consensus size: 16
17795147 AAAATAAAAT
*
17795157 AATAAATAATAAATAA
1 AATAAATAAAAAATAA
*
17795173 AATAAATAAAAAAGAA
1 AATAAATAAAAAATAA
* * * **
17795189 TATTACATAAACCTAATCT
1 -AATAAATAAA--AAATAA
17795208 AATAAATAAAAAATAA
1 AATAAATAAAAAATAA
* *
17795224 AATAAACAAATAAACAA
1 AATAAATAAA-AAATAA
17795241 AA-AAA-AAAAAA
1 AATAAATAAAAAA
17795252 ACCTGGAGCG
Statistics
Matches: 60, Mismatches: 15, Indels: 10
0.71 0.18 0.12
Matches are distributed among these distances:
14 3 0.05
15 3 0.05
16 29 0.48
17 15 0.25
18 8 0.13
19 2 0.03
ACGTcount: A:0.74, C:0.06, G:0.01, T:0.19
Consensus pattern (16 bp):
AATAAATAAAAAATAA
Found at i:17795242 original size:24 final size:23
Alignment explanation
Indices: 17795208--17795253 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
17795198 AACCTAATCT
* *
17795208 AATAAATAAAAAATAAAATAAACA
1 AATAAACAAAAAA-AAAAAAAACA
17795232 AATAAACAAAAAAAAAAAAAAC
1 AATAAACAAAAAAAAAAAAAAC
17795254 CTGGAGCGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.83, C:0.07, G:0.00, T:0.11
Consensus pattern (23 bp):
AATAAACAAAAAAAAAAAAAACA
Found at i:17796057 original size:6 final size:6
Alignment explanation
Indices: 17796046--17796073 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
17796036 CTAGCCCTCC
17796046 AAAATA AAAATA AAAATA AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAA
17796074 CTAGATAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:17796198 original size:14 final size:17
Alignment explanation
Indices: 17796166--17796202 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 17
17796156 TAGATAAGTA
17796166 AAAATACAAAAATGAAT
1 AAAATACAAAAATGAAT
17796183 AAAATA-AAAAA-G-AT
1 AAAATACAAAAATGAAT
17796197 AAAATA
1 AAAATA
17796203 TATATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 8 0.40
15 1 0.05
16 5 0.25
17 6 0.30
ACGTcount: A:0.76, C:0.03, G:0.05, T:0.16
Consensus pattern (17 bp):
AAAATACAAAAATGAAT
Found at i:17796309 original size:16 final size:14
Alignment explanation
Indices: 17796221--17796310 Score: 56
Period size: 13 Copynumber: 7.0 Consensus size: 14
17796211 TACATATTAG
17796221 TAATAATACATAAA
1 TAATAATACATAAA
*
17796235 T-ATTA-ACA-AAA
1 TAATAATACATAAA
* *
17796246 -AAAAATAAATAAA
1 TAATAATACATAAA
17796259 T-AT-ATACAT--A
1 TAATAATACATAAA
*
17796269 TATTAATACAT-AA
1 TAATAATACATAAA
17796282 TAATAATA-ATAAA
1 TAATAATACATAAA
17796295 TAATACAATACATAAA
1 TAAT--AATACATAAA
17796311 ATACAAAAGA
Statistics
Matches: 57, Mismatches: 8, Indels: 20
0.67 0.09 0.24
Matches are distributed among these distances:
10 2 0.04
11 6 0.11
12 18 0.32
13 21 0.37
14 1 0.02
15 4 0.07
16 5 0.09
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (14 bp):
TAATAATACATAAA
Found at i:17796516 original size:1 final size:1
Alignment explanation
Indices: 17796512--17796607 Score: 102
Period size: 1 Copynumber: 96.0 Consensus size: 1
17796502 CATTTTTTGG
* * * * ** * *
17796512 TTTTTTTGTTTTTTTTGTTTTTTTTGTTTTTTGTTTTTTTTTTTTTTCATTTTTTATTTTTTTGT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
17796577 TTTTTGTTTTTGTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
17796608 ACCAAAGCTC
Statistics
Matches: 76, Mismatches: 19, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 76 1.00
ACGTcount: A:0.02, C:0.01, G:0.07, T:0.90
Consensus pattern (1 bp):
T
Found at i:17798141 original size:12 final size:12
Alignment explanation
Indices: 17798122--17798154 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
17798112 TCCTTCATTC
17798122 TTTC-TTTTTTT
1 TTTCTTTTTTTT
17798133 TTTCTTTTTTTT
1 TTTCTTTTTTTT
*
17798145 TGTCTTTTTT
1 TTTCTTTTTT
17798155 CATCATCTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.88
Consensus pattern (12 bp):
TTTCTTTTTTTT
Found at i:17798142 original size:10 final size:11
Alignment explanation
Indices: 17798122--17798178 Score: 60
Period size: 11 Copynumber: 4.8 Consensus size: 11
17798112 TCCTTCATTC
17798122 TTTCTTTTTTT
1 TTTCTTTTTTT
17798133 TTTCTTTTTTT
1 TTTCTTTTTTT
17798144 TTGTCTTTTTTCAT
1 TT-TCTTTTTT--T
**
17798158 CATCTTTTTTT
1 TTTCTTTTTTT
17798169 TTTCATTTTT
1 TTTC-TTTTT
17798179 CATCCATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
11 16 0.42
12 13 0.34
13 8 0.21
14 1 0.03
ACGTcount: A:0.05, C:0.12, G:0.02, T:0.81
Consensus pattern (11 bp):
TTTCTTTTTTT
Found at i:17798163 original size:25 final size:24
Alignment explanation
Indices: 17798135--17798182 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
17798125 CTTTTTTTTT
*
17798135 TCTTTTTTTTTGTCTTTTTTCATCA
1 TCTTTTTTTTT-TCATTTTTCATCA
17798160 TCTTTTTTTTTTCATTTTTCATC
1 TCTTTTTTTTTTCATTTTTCATC
17798183 CATTATTGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.08, C:0.17, G:0.02, T:0.73
Consensus pattern (24 bp):
TCTTTTTTTTTTCATTTTTCATCA
Found at i:17802098 original size:59 final size:57
Alignment explanation
Indices: 17802000--17802463 Score: 485
Period size: 59 Copynumber: 7.8 Consensus size: 57
17801990 TTTTTTGTAT
17802000 GGAAAATTGATACTTTCAACTTTTTCC-CAAAAATATTTTTTGAAAATTTCGATTT-TCAA
1 GGAAAATTGATACTTTCAAC-TTTTCCTCAAAAATATTTTTTGAAAATTT--ATTTCT-AA
*
17802059 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTGAAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA--TATTTTTTGAAAATTTATTTCTAA
* * *
17802118 GGAGAATTGATACTTTCAACTTTTCCCCAAAAAATTTTTTTTTTTG-AAATTTATTTTTCTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAA---TATTTTTTGAAAATTTA--TTTC---TA
17802182 A
57 A
*
17802183 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTTTTG-AAATTTATTTCTGA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATA----TTTTTTGAAAATTTATTTCTAA
* * * *
17802243 GAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTGTTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAATTTATTTCTAA
17802300 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTTTG-AAATTTATTTCTGAA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATA---TTTTTTGAAAATTTATTTCT-AA
* * * * *
17802360 -GAAAATTGATACTTTTAACTTTTTCACAATAATATTTTTTGGAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAATTTATTTCTAA
*
17802416 GGAAAATTGATACTTTCAACTTTTTCCTAAAAATATATTTTTTTGAAA
1 GGAAAATTGATACTTTCAAC-TTTTCCTCAAAA-ATA-TTTTTTGAAA
17802464 TTTTTTATTT
Statistics
Matches: 354, Mismatches: 23, Indels: 55
0.82 0.05 0.13
Matches are distributed among these distances:
56 17 0.05
57 74 0.21
58 14 0.04
59 101 0.29
60 66 0.19
61 26 0.07
62 4 0.01
63 4 0.01
64 6 0.02
65 42 0.12
ACGTcount: A:0.34, C:0.12, G:0.08, T:0.46
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAATTTATTTCTAA
Found at i:17802407 original size:116 final size:116
Alignment explanation
Indices: 17802001--17802466 Score: 618
Period size: 116 Copynumber: 3.9 Consensus size: 116
17801991 TTTTTGTATG
* *
17802001 GAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTGAAAATTTCGATTT-TCAAGGAAAA
1 GAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTT-G-TTTCT-AAGGAAAA
**
17802065 TTGATACTTTCAACTTTT-CCTCAAAAA-CCTTTTTTTTGAAAATTTATTTCT-AA
63 TTGATACTTTCAACTTTTCCCT-AAAAATATTTTTTTTTG-AAATTTATTTCTGAA
* * * *
17802118 GGAGAATTGATACTTTCAACTTTTCCCCAAAAAATTTTTTTTTTTGAAATTTATTTTTCTTTTAA
1 -GAAAATTGATACTTTCAACTTTTCCCC-AAAAA--TATTTTTTGGAAA-TT-TGTTTC---TAA
17802183 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTTGAAATTTATTTCTG-A
57 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTTTGAAATTTATTTCTGAA
17802243 GAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTGTTTCTAAGGAAAATT
1 G-AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTGTTTCTAAGGAAAATT
17802308 GATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAAATTTATTTCTGAA
65 GATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAAATTTATTTCTGAA
* * * * *
17802360 GAAAATTGATACTTTTAACTTTTTCACAATAATATTTTTTGGAAATTTATTTCTAAGGAAAATTG
1 GAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTGTTTCTAAGGAAAATTG
* *
17802425 ATACTTTCAACTTTTTCCTAAAAATATATTTTTTTGAAATTT
66 ATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAAATTT
17802467 TTTATTTTTA
Statistics
Matches: 314, Mismatches: 19, Indels: 32
0.86 0.05 0.09
Matches are distributed among these distances:
116 122 0.39
117 40 0.13
118 25 0.08
119 5 0.02
120 5 0.02
121 15 0.05
122 13 0.04
123 1 0.00
124 37 0.12
125 42 0.13
126 9 0.03
ACGTcount: A:0.34, C:0.12, G:0.08, T:0.46
Consensus pattern (116 bp):
GAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTGTTTCTAAGGAAAATTG
ATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAAATTTATTTCTGAA
Found at i:17802557 original size:13 final size:13
Alignment explanation
Indices: 17802539--17802566 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
17802529 CTAATTTAAT
17802539 AAATAAACAAATA
1 AAATAAACAAATA
17802552 AAATAAACAAATA
1 AAATAAACAAATA
17802565 AA
1 AA
17802567 CAAAGAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.79, C:0.07, G:0.00, T:0.14
Consensus pattern (13 bp):
AAATAAACAAATA
Found at i:17802588 original size:21 final size:21
Alignment explanation
Indices: 17802543--17802588 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
17802533 TTTAATAAAT
* * * *
17802543 AAACAAATAAAATAAACAAAT
1 AAACAAAGAAAAAAAAAAAAA
17802564 AAACAAAGAAAAAAAAAAAAA
1 AAACAAAGAAAAAAAAAAAAA
17802585 AAAC
1 AAAC
17802589 CTGGAGCGGC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.83, C:0.09, G:0.02, T:0.07
Consensus pattern (21 bp):
AAACAAAGAAAAAAAAAAAAA
Found at i:17803516 original size:14 final size:16
Alignment explanation
Indices: 17803486--17803518 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
17803476 TAGATAAGTA
17803486 AAAATACAAAAATGAT
1 AAAATACAAAAATGAT
17803502 AAAATA-AAAAA-GAT
1 AAAATACAAAAATGAT
17803516 AAA
1 AAA
17803519 TATATATAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
15 5 0.29
16 6 0.35
ACGTcount: A:0.76, C:0.03, G:0.06, T:0.15
Consensus pattern (16 bp):
AAAATACAAAAATGAT
Found at i:17803540 original size:47 final size:49
Alignment explanation
Indices: 17803488--17803589 Score: 124
Period size: 47 Copynumber: 2.1 Consensus size: 49
17803478 GATAAGTAAA
*
17803488 AATACAAAAATGA-TAA-AATAAAA-AAGATAAATATATATA-ACATATA-T
1 AATACAAAAAT-ATTAACAA-AAAACAA-ATAAATAAATATATACATATATT
*
17803535 AATACATAAATATTAACAAAAAACAAATAAATAAATATATACATATATT
1 AATACAAAAATATTAACAAAAAACAAATAAATAAATATATACATATATT
17803584 AATACA
1 AATACA
17803590 TAATAATAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
46 1 0.02
47 29 0.60
48 11 0.23
49 7 0.15
ACGTcount: A:0.65, C:0.07, G:0.02, T:0.26
Consensus pattern (49 bp):
AATACAAAAATATTAACAAAAAACAAATAAATAAATATATACATATATT
Found at i:17810633 original size:99 final size:97
Alignment explanation
Indices: 17810376--17810639 Score: 258
Period size: 99 Copynumber: 2.7 Consensus size: 97
17810366 TTCCTCAAGG
* * * * * ** *
17810376 CATTTAAATTCCTTATAGCTCCGAAATAATGGAATCTAACATTAATCATCATAACATCATACCTA
1 CATTTAAATTCCTCAAAGCTCC-AAATAATGGAACCTAACATAAATCACCATAATGT-ATATCTA
* * * *
17810441 AGGCATGTGATAATCATGATAAATATTACTCATA
64 AGGCAAGAGATAATCATGATAAATATTACTAAAA
* * * * * *
17810475 CATTCAAATTCTTCAAAGTTCCAACACAATGGAACCAAATATAAATCACCATAATTGTATATCTA
1 CATTTAAATTCCTCAAAGCTCCAA-ATAATGGAACCTAACATAAATCACCATAA-TGTATATCTA
* * * * *
17810540 AGGCAAGAGATCATCATGATTATTGTTATTAAAA
64 AGGCAAGAGATAATCATGATAAATATTACTAAAA
*
17810574 CATTTAAATTCCTCAAAGCTCCAATATAATGGAACCTGACATAAATCACCATATATGTATATCTA
1 CATTTAAATTCCTCAAAGCTCCAA-ATAATGGAACCTAACATAAATCACCATA-ATGTATATCTA
17810639 A
64 A
17810640 AGCACATAAT
Statistics
Matches: 131, Mismatches: 31, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
98 2 0.02
99 127 0.97
100 2 0.02
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (97 bp):
CATTTAAATTCCTCAAAGCTCCAAATAATGGAACCTAACATAAATCACCATAATGTATATCTAAG
GCAAGAGATAATCATGATAAATATTACTAAAA
Found at i:17810676 original size:99 final size:99
Alignment explanation
Indices: 17810453--17810681 Score: 232
Period size: 99 Copynumber: 2.3 Consensus size: 99
17810443 GCATGTGATA
* * * * * * * *
17810453 ATCATGATAAATATTACTCATACATTCAAATTCTTCAAAGTTCCAACACAATGGAACCAAATATA
1 ATCATGATTAATGTTATTAATACATTTAAATTCCTCAAAGCTCCAACACAATGGAACCAAACATA
*
17810518 AATCACCATAATTGTATATCTAAGGCAAGAGATC
66 AATCACCATAATTGTATATCTAAAGCAAGAGATC
* * * * **
17810552 ATCATGATTATTGTTATTAAAACATTTAAATTCCTCAAAGCTCCAATATAATGGAACCTGACATA
1 ATCATGATTAATGTTATTAATACATTTAAATTCCTCAAAGCTCCAACACAATGGAACCAAACATA
*
17810617 AATCACCAT-ATATGTATATCTAAAGCACATA-ATC
66 AATCACCATAAT-TGTATATCTAAAGCA-AGAGATC
* *
17810651 GT-ATTGATTACAT-TTATTTATACATTTAAAT
1 ATCA-TGATTA-ATGTTATTAATACATTTAAAT
17810682 ATTTCATACC
Statistics
Matches: 106, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
98 3 0.03
99 100 0.94
100 3 0.03
ACGTcount: A:0.41, C:0.17, G:0.08, T:0.33
Consensus pattern (99 bp):
ATCATGATTAATGTTATTAATACATTTAAATTCCTCAAAGCTCCAACACAATGGAACCAAACATA
AATCACCATAATTGTATATCTAAAGCAAGAGATC
Found at i:17821989 original size:21 final size:18
Alignment explanation
Indices: 17821965--17822013 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 18
17821955 TGTTTTAATC
17821965 ATAATCAAATATTATATCCAT
1 ATAATCAAATATTATAT---T
17821986 ATAAT-AAACTATTATATT
1 ATAATCAAA-TATTATATT
17822004 ATAATCAAAT
1 ATAATCAAAT
17822014 TATAATCATT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
18 7 0.27
19 3 0.12
20 3 0.12
21 13 0.50
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.39
Consensus pattern (18 bp):
ATAATCAAATATTATATT
Found at i:17822426 original size:2 final size:2
Alignment explanation
Indices: 17822419--17822451 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
17822409 TGAAAACTAA
17822419 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
17822452 ACTAATAGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:17822626 original size:19 final size:20
Alignment explanation
Indices: 17822602--17822639 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
17822592 ATTCTTTTTA
*
17822602 CTTGGAATTAA-TCCATAAT
1 CTTGGAATCAATTCCATAAT
17822621 CTTGGAATCAATTCCATAA
1 CTTGGAATCAATTCCATAA
17822640 AAATGAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (20 bp):
CTTGGAATCAATTCCATAAT
Found at i:17830080 original size:22 final size:23
Alignment explanation
Indices: 17830055--17830100 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
17830045 CTTAAAATTT
* *
17830055 TAAAACCCTAAATT-TCGAAACC
1 TAAAACCATAAATTCTCAAAACC
17830077 TAAAACCATAAATTCTCAAAACC
1 TAAAACCATAAATTCTCAAAACC
17830100 T
1 T
17830101 TGAAATCCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 13 0.62
23 8 0.38
ACGTcount: A:0.48, C:0.26, G:0.02, T:0.24
Consensus pattern (23 bp):
TAAAACCATAAATTCTCAAAACC
Found at i:17830195 original size:14 final size:15
Alignment explanation
Indices: 17830176--17830217 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
17830166 CTTGAAATCT
17830176 CAAAATTCC-AAAAC-
1 CAAAA-TCCTAAAACA
17830190 CAAAATCCTAAAACA
1 CAAAATCCTAAAACA
*
17830205 CAAAACCCTAAAA
1 CAAAATCCTAAAA
17830218 TCTTGAAACT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 3 0.12
14 10 0.40
15 12 0.48
ACGTcount: A:0.60, C:0.29, G:0.00, T:0.12
Consensus pattern (15 bp):
CAAAATCCTAAAACA
Found at i:17831953 original size:35 final size:35
Alignment explanation
Indices: 17831909--17832008 Score: 137
Period size: 35 Copynumber: 2.9 Consensus size: 35
17831899 TTAATCTCAA
* *
17831909 TTATTTTTATTTTCTGACTTACGGTTCGATCCCAG
1 TTATTTTTATTTTCTGACTTACAGTTCAATCCCAG
* * * *
17831944 TTATCTTTATTCTCTGACTTGCAGTTCAATCCTAG
1 TTATTTTTATTTTCTGACTTACAGTTCAATCCCAG
*
17831979 TTATTTTTATTTTTTGACTTACAGTTCAAT
1 TTATTTTTATTTTCTGACTTACAGTTCAAT
17832009 TGAGATCATT
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 55 1.00
ACGTcount: A:0.20, C:0.18, G:0.11, T:0.51
Consensus pattern (35 bp):
TTATTTTTATTTTCTGACTTACAGTTCAATCCCAG
Found at i:17834649 original size:15 final size:15
Alignment explanation
Indices: 17834629--17834676 Score: 71
Period size: 15 Copynumber: 3.2 Consensus size: 15
17834619 TGAATCTTTA
17834629 AAATTTTAAAACCCT
1 AAATTTTAAAACCCT
*
17834644 AAATTTGT-AAACCTT
1 AAATTT-TAAAACCCT
17834659 AAATTTTAAAACCCT
1 AAATTTTAAAACCCT
17834674 AAA
1 AAA
17834677 ATCATAAACC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
14 1 0.03
15 27 0.93
16 1 0.03
ACGTcount: A:0.48, C:0.17, G:0.02, T:0.33
Consensus pattern (15 bp):
AAATTTTAAAACCCT
Found at i:17834685 original size:30 final size:30
Alignment explanation
Indices: 17834629--17834686 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
17834619 TGAATCTTTA
* **
17834629 AAATTTTAAAACCCTAAATTTGTAAACCTT
1 AAATTTTAAAACCCTAAAATCATAAACCTT
17834659 AAATTTTAAAACCCTAAAATCATAAACC
1 AAATTTTAAAACCCTAAAATCATAAACC
17834687 CTCGAAACCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.48, C:0.19, G:0.02, T:0.31
Consensus pattern (30 bp):
AAATTTTAAAACCCTAAAATCATAAACCTT
Found at i:17834756 original size:8 final size:7
Alignment explanation
Indices: 17834737--17834814 Score: 50
Period size: 8 Copynumber: 10.4 Consensus size: 7
17834727 TAAGCCTTCC
*
17834737 AAACCCA
1 AAACCTA
17834744 AAACCTTA
1 AAACC-TA
*
17834752 AAACCAA
1 AAACCTA
17834759 AAACCTTA
1 AAACC-TA
*
17834767 AAATCTCA
1 AAACCT-A
*
17834775 AAATCCCA
1 AAA-CCTA
17834783 AAACC-A
1 AAACCTA
17834789 AAATCCTA
1 AAA-CCTA
*
17834797 AAACCCA
1 AAACCTA
17834804 AAACCTTA
1 AAACC-TA
17834812 AAA
1 AAA
17834815 TCTCGAAACT
Statistics
Matches: 56, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
6 4 0.07
7 24 0.43
8 27 0.48
9 1 0.02
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.14
Consensus pattern (7 bp):
AAACCTA
Found at i:17834761 original size:15 final size:15
Alignment explanation
Indices: 17834737--17834814 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
17834727 TAAGCCTTCC
*
17834737 AAACCCAAAACCTTA
1 AAACCAAAAACCTTA
17834752 AAACCAAAAACCTTA
1 AAACCAAAAACCTTA
* *
17834767 AAATCTCAAAATCC-CA
1 AAA-C-CAAAAACCTTA
*
17834783 AAACCAAAATCC-TA
1 AAACCAAAAACCTTA
*
17834797 AAACCCAAAACCTTA
1 AAACCAAAAACCTTA
17834812 AAA
1 AAA
17834815 TCTCGAAACT
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
14 19 0.35
15 23 0.43
16 5 0.09
17 7 0.13
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.14
Consensus pattern (15 bp):
AAACCAAAAACCTTA
Found at i:17835075 original size:17 final size:18
Alignment explanation
Indices: 17835050--17835083 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
17835040 ATTTACAGAA
17835050 TTTTATTTCAT-TAAGTT
1 TTTTATTTCATATAAGTT
*
17835067 TTTTTTTTCATATAAGT
1 TTTTATTTCATATAAGT
17835084 CCTTAAACCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.24, C:0.06, G:0.06, T:0.65
Consensus pattern (18 bp):
TTTTATTTCATATAAGTT
Found at i:17837182 original size:16 final size:18
Alignment explanation
Indices: 17837163--17837199 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
17837153 ATTATCTTTC
17837163 TTTAAAGT-TT-ATATAA
1 TTTAAAGTATTAATATAA
*
17837179 TTTAAATTATTAATATAA
1 TTTAAAGTATTAATATAA
17837197 TTT
1 TTT
17837200 TTAAAAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 7 0.39
17 2 0.11
18 9 0.50
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (18 bp):
TTTAAAGTATTAATATAA
Found at i:17839879 original size:14 final size:13
Alignment explanation
Indices: 17839856--17839897 Score: 59
Period size: 14 Copynumber: 3.2 Consensus size: 13
17839846 ATCAATAGAA
17839856 TTTTCCTTTTTCT
1 TTTTCCTTTTTCT
17839869 TTTTCCCTTTTTCT
1 TTTT-CCTTTTTCT
*
17839883 TTTTTC-TTTTCT
1 TTTTCCTTTTTCT
17839895 TTT
1 TTT
17839898 GGTGGTGACT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 9 0.33
13 5 0.19
14 13 0.48
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTTCCTTTTTCT
Found at i:17842786 original size:15 final size:15
Alignment explanation
Indices: 17842766--17842824 Score: 82
Period size: 15 Copynumber: 3.9 Consensus size: 15
17842756 CTCAATCTAA
17842766 ATTTATATATATATT
1 ATTTATATATATATT
*
17842781 ATTTATATATATATG
1 ATTTATATATATATT
* *
17842796 AATTATATATAAATT
1 ATTTATATATATATT
17842811 AATTTATATATATA
1 -ATTTATATATATA
17842825 CAAAAATAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
15 26 0.70
16 11 0.30
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (15 bp):
ATTTATATATATATT
Found at i:17842863 original size:17 final size:18
Alignment explanation
Indices: 17842830--17842863 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
17842820 ATATACAAAA
*
17842830 ATAAAAGATAAATATTAT
1 ATAAAAGATAAAAATTAT
17842848 ATAAAA-ATAAAAATTA
1 ATAAAAGATAAAAATTA
17842864 AGTTTAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (18 bp):
ATAAAAGATAAAAATTAT
Found at i:17843712 original size:31 final size:32
Alignment explanation
Indices: 17843650--17843713 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
17843640 AACTTTGAAT
*
17843650 TTTATATATTTTTAATTTATGTTTAGGCTTTA
1 TTTATATATTTTTAATTTATGTTTAGACTTTA
* * *
17843682 TTTATTTATTTTTCATTT-TGTTTTGACTTTA
1 TTTATATATTTTTAATTTATGTTTAGACTTTA
17843713 T
1 T
17843714 AAATTCTAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
31 12 0.43
32 16 0.57
ACGTcount: A:0.20, C:0.05, G:0.08, T:0.67
Consensus pattern (32 bp):
TTTATATATTTTTAATTTATGTTTAGACTTTA
Found at i:17849068 original size:18 final size:18
Alignment explanation
Indices: 17849045--17849079 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
17849035 CTCAAACTCT
17849045 GTCCTCAGTTAACCAGGA
1 GTCCTCAGTTAACCAGGA
17849063 GTCCTCAGTTAACCAGG
1 GTCCTCAGTTAACCAGG
17849080 CTCTATATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (18 bp):
GTCCTCAGTTAACCAGGA
Done.