Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168483.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_81, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111682
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
File 1 of 2
Found at i:2055 original size:12 final size:11
Alignment explanation
Indices: 2040--2078 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
2030 AAAAGATGAT
2040 GAAAAAGAAAAA
1 GAAAAA-AAAAA
2052 GAAAAAACAAAA
1 GAAAAAA-AAAA
*
2064 GAAAAAAAGAA
1 GAAAAAAAAAA
2075 GAAA
1 GAAA
2079 GAAATGAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
11 8 0.32
12 17 0.68
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (11 bp):
GAAAAAAAAAA
Found at i:2070 original size:20 final size:20
Alignment explanation
Indices: 2047--2098 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
2037 GATGAAAAAG
2047 AAAAAGAAAAAACAAAAGAA
1 AAAAAGAAAAAACAAAAGAA
* * * *
2067 AAAAAGAAGAAAGAAATGAG
1 AAAAAGAAAAAACAAAAGAA
*
2087 AAAATGAAAAAA
1 AAAAAGAAAAAA
2099 AGAGATTCAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.79, C:0.02, G:0.15, T:0.04
Consensus pattern (20 bp):
AAAAAGAAAAAACAAAAGAA
Found at i:3377 original size:42 final size:42
Alignment explanation
Indices: 3303--3521 Score: 374
Period size: 42 Copynumber: 5.3 Consensus size: 42
3293 ATGATTGTCA
3303 AGGAGCAATTTAC-TTTCCAAAGTTTCGT--TGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCCAAAG--TCGTGGTGCCTCTGTTTAG
3344 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
3386 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTCTTTAG
1 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
3428 AGGAGCATTTTA-TTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
3469 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
3511 AGGAGCAATTT
1 AGGAGCAATTT
3522 GGTGCCTCTA
Statistics
Matches: 170, Mismatches: 4, Indels: 7
0.94 0.02 0.04
Matches are distributed among these distances:
40 4 0.02
41 52 0.31
42 114 0.67
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.37
Consensus pattern (42 bp):
AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:3452 original size:83 final size:84
Alignment explanation
Indices: 3303--3521 Score: 374
Period size: 83 Copynumber: 2.6 Consensus size: 84
3293 ATGATTGTCA
3303 AGGAGCAATTTAC-TTTCCAAAGTTTCGT--TGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAA
1 AGGAGCAATTTACTTTTCCAAAG--TCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAA
3365 AGTCGTGGTGCCTCTGTTTAG
64 AGTCGTGGTGCCTCTGTTTAG
* *
3386 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTCTTTAGAGGAGCATTTTA-TTTTCCAAAG
1 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAG
3450 TCGTGGTGCCTCTGTTTAG
66 TCGTGGTGCCTCTGTTTAG
3469 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTT
1 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTT
3522 GGTGCCTCTA
Statistics
Matches: 129, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
82 4 0.03
83 93 0.72
84 32 0.25
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.37
Consensus pattern (84 bp):
AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAG
TCGTGGTGCCTCTGTTTAG
Found at i:3524 original size:26 final size:26
Alignment explanation
Indices: 3495--3547 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3485 TCCAAAGTCG
*
3495 TGGTGCCTCTGTTTAGAGGAGCAATT
1 TGGTGCCTCTATTTAGAGGAGCAATT
3521 TGGTGCCTCTATTTAGAGGAGCAATT
1 TGGTGCCTCTATTTAGAGGAGCAATT
3547 T
1 T
3548 ACTTTCCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.21, C:0.15, G:0.28, T:0.36
Consensus pattern (26 bp):
TGGTGCCTCTATTTAGAGGAGCAATT
Found at i:3578 original size:41 final size:41
Alignment explanation
Indices: 3521--3662 Score: 203
Period size: 41 Copynumber: 3.5 Consensus size: 41
3511 AGGAGCAATT
* *
3521 TGGTGCCTCTATTTAGAGGAGCAATTTACTTTCCAAAGTTG
1 TGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCG
* *
3562 TGGTGGCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCG
1 TGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCG
* * *
3603 TGGTGCCTTTGTGTAGAGGAGCAATTTATTTTCCAAAGTCG
1 TGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCG
* *
3644 TTGAGCCTCTGTTTAGAGG
1 TGGTGCCTCTGTTTAGAGG
3663 GGCTTTGGTC
Statistics
Matches: 88, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 88 1.00
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (41 bp):
TGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCG
Found at i:3582 original size:67 final size:68
Alignment explanation
Indices: 3453--3588 Score: 238
Period size: 67 Copynumber: 2.0 Consensus size: 68
3443 TCCAAAGTCG
*
3453 TGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 TGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
3518 ATT
66 ATT
* *
3521 TGGTGCCTCTATTTAGAGGAGCAATTTAC-TTTCCAAAGTTGTGGTGGCTCTGTTTAGAGGAGCA
1 TGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
3585 ATT
66 ATT
3588 T
1 T
3589 ACTTTCAAAA
Statistics
Matches: 65, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
67 37 0.57
68 28 0.43
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.36
Consensus pattern (68 bp):
TGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
ATT
Found at i:3683 original size:1 final size:1
Alignment explanation
Indices: 3673--3728 Score: 58
Period size: 1 Copynumber: 56.0 Consensus size: 1
3663 GGCTTTGGTC
* * * * * *
3673 AAAAACAAAAAAAAAACAAAAAAACAAAAAAAACAAAAAAAAAATAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
3729 TGACAATGTT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.89, C:0.09, G:0.00, T:0.02
Consensus pattern (1 bp):
A
Found at i:3689 original size:11 final size:11
Alignment explanation
Indices: 3673--3728 Score: 71
Period size: 11 Copynumber: 5.1 Consensus size: 11
3663 GGCTTTGGTC
3673 AAAAACAAAAA
1 AAAAACAAAAA
3684 AAAAACAAAAA
1 AAAAACAAAAA
3695 AACAAA-AAAAA
1 AA-AAACAAAAA
3706 CAAAAA-AAAAA
1 -AAAAACAAAAA
*
3717 TAAAACAAAAA
1 AAAAACAAAAA
3728 A
1 A
3729 TGACAATGTT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
10 4 0.10
11 31 0.77
12 5 0.12
ACGTcount: A:0.89, C:0.09, G:0.00, T:0.02
Consensus pattern (11 bp):
AAAAACAAAAA
Found at i:3694 original size:17 final size:16
Alignment explanation
Indices: 3672--3728 Score: 87
Period size: 17 Copynumber: 3.4 Consensus size: 16
3662 GGGCTTTGGT
3672 CAAAAACAAAAAAAAAA
1 CAAAAA-AAAAAAAAAA
3689 CAAAAAAACAAAAAAAA
1 CAAAAAAA-AAAAAAAA
*
3706 CAAAAAAAAAATAAAA
1 CAAAAAAAAAAAAAAA
3722 CAAAAAA
1 CAAAAAA
3729 TGACAATGTT
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
16 16 0.42
17 22 0.58
ACGTcount: A:0.88, C:0.11, G:0.00, T:0.02
Consensus pattern (16 bp):
CAAAAAAAAAAAAAAA
Found at i:3710 original size:25 final size:24
Alignment explanation
Indices: 3672--3728 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 24
3662 GGGCTTTGGT
3672 CAAAAACAAAAAAAAAACAAA-AAAA
1 CAAAAA-AAAAAAAAAA-AAATAAAA
3697 CAAAAAAAACAAAAAAAAAATAAAA
1 CAAAAAAAA-AAAAAAAAAATAAAA
3722 CAAAAAA
1 CAAAAAA
3729 TGACAATGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
24 6 0.20
25 24 0.80
ACGTcount: A:0.88, C:0.11, G:0.00, T:0.02
Consensus pattern (24 bp):
CAAAAAAAAAAAAAAAAAATAAAA
Found at i:3954 original size:12 final size:12
Alignment explanation
Indices: 3934--3993 Score: 52
Period size: 12 Copynumber: 4.9 Consensus size: 12
3924 CTTTTGTATT
*
3934 TTATGTATTTTA
1 TTATTTATTTTA
3946 TTATTTATTATTA
1 TTATTTATT-TTA
3959 TTA-TTATTATTA
1 TTATTTATT-TTA
* *
3971 TTATGTATATCT-
1 TTATTTAT-TTTA
3983 TTATTTATTTT
1 TTATTTATTTT
3994 TTTCTGTTAA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
11 2 0.05
12 27 0.68
13 10 0.25
14 1 0.03
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.68
Consensus pattern (12 bp):
TTATTTATTTTA
Found at i:3956 original size:3 final size:3
Alignment explanation
Indices: 3930--3974 Score: 58
Period size: 3 Copynumber: 15.0 Consensus size: 3
3920 CCTTCTTTTG
3930 TAT T-T TAT GTAT T-T TAT TATT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT -TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
3975 GTATATCTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
2 4 0.11
3 28 0.74
4 6 0.16
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:4048 original size:20 final size:18
Alignment explanation
Indices: 4014--4057 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 18
4004 TATTTATATG
4014 TAATTTATTTATATAGTTA
1 TAATTTATTTATATA-TTA
4033 TATATTTA-TTATTATATTA
1 TA-ATTTATTTA-TATATTA
4052 TAATTT
1 TAATTT
4058 TTTTTTCTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 4 0.17
19 10 0.43
20 9 0.39
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (18 bp):
TAATTTATTTATATATTA
Found at i:4619 original size:11 final size:11
Alignment explanation
Indices: 4603--4643 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
4593 ATCCTAGAAA
*
4603 CCGGTGATCTT
1 CCGGTGAACTT
4614 CCGGTGAACTT
1 CCGGTGAACTT
* *
4625 CTGGCGAACTT
1 CCGGTGAACTT
4636 CCGGTGAA
1 CCGGTGAA
4644 AAAACCCAGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.17, C:0.27, G:0.29, T:0.27
Consensus pattern (11 bp):
CCGGTGAACTT
Found at i:4684 original size:20 final size:20
Alignment explanation
Indices: 4635--4685 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
4625 CTGGCGAACT
*
4635 TCCGGTGAAAAAACCCAGAT
1 TCCGGTGAAAAAACCCAGAA
*
4655 TCCGATGAAAAAACCCAGAA
1 TCCGGTGAAAAAACCCAGAA
*
4675 TCCGGCGAAAA
1 TCCGGTGAAAA
4686 TCTCACCGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.43, C:0.25, G:0.20, T:0.12
Consensus pattern (20 bp):
TCCGGTGAAAAAACCCAGAA
Found at i:5051 original size:11 final size:10
Alignment explanation
Indices: 5026--5050 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
5016 TTATTTTTAA
5026 TTTTTGAATT
1 TTTTTGAATT
5036 TTTTTGAATT
1 TTTTTGAATT
5046 TTTTT
1 TTTTT
5051 TATTTTCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (10 bp):
TTTTTGAATT
Found at i:5132 original size:17 final size:16
Alignment explanation
Indices: 5098--5137 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
5088 TTAGATTAGG
*
5098 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
5114 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
5131 TTTATTT
1 TTTATTT
5138 TTGTTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:5144 original size:17 final size:17
Alignment explanation
Indices: 5124--5171 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
5114 TTTATCTTAA
5124 TTTTATTTTTATTT-TT
1 TTTTATTTTTATTTATT
* *
5140 GTTTTACTTTTCTTTATT
1 -TTTTATTTTTATTTATT
5158 TTTCTATTTTTATT
1 TTT-TATTTTTATT
5172 ATTCTATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.12, C:0.06, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTTATTTTTATTTATT
Found at i:5171 original size:14 final size:14
Alignment explanation
Indices: 5124--5181 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
5114 TTTATCTTAA
5124 TTTTA-TTTT-TAT
1 TTTTATTTTTCTAT
* * *
5136 TTTTGTTTTACTTT
1 TTTTATTTTTCTAT
5150 TCTTTATTTTTCTAT
1 T-TTTATTTTTCTAT
*
5165 TTTTATTATTCTAT
1 TTTTATTTTTCTAT
5179 TTT
1 TTT
5182 CTTTAAATAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 4 0.11
13 3 0.08
14 18 0.50
15 11 0.31
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTTATTTTTCTAT
Found at i:5186 original size:17 final size:17
Alignment explanation
Indices: 5147--5186 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 17
5137 TTTGTTTTAC
*
5147 TTTTCTTTATTTTTCTA
1 TTTTCTTTATTATTCTA
5164 --TT-TTTATTATTCTA
1 TTTTCTTTATTATTCTA
5178 TTTTCTTTA
1 TTTTCTTTA
5187 AATAAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 6
0.73 0.04 0.23
Matches are distributed among these distances:
14 11 0.58
15 2 0.11
16 2 0.11
17 4 0.21
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTCTTTATTATTCTA
Found at i:5344 original size:117 final size:114
Alignment explanation
Indices: 5189--5539 Score: 528
Period size: 117 Copynumber: 3.0 Consensus size: 114
5179 TTTCTTTAAA
* * *
5189 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGAA
1 TAAAAAT--AAATTTTC-AAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT-AA
* *
5254 AATCAAAATTTCCAAAAAATATTTTTAGGGAAAAGTTGAAAGTAGCAATTTTCCC
62 AAT-AAAATTTCAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCC
5309 TAAAAATAAATTTTCAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
1 TAAAAATAAATTTTCAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAT
* *
5374 AAATTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
65 AAAATTTC-AAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCC
5426 TAAAAATAAATTTTC-AAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAA-TTTCCTTAAGAAT
1 TAAAAATAAATTTTCAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAA-AAT
5489 -AAATTTCAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCC
65 AAAATTTCAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCC
5538 TA
1 TA
5540 CACAAAGAAA
Statistics
Matches: 218, Mismatches: 11, Indels: 12
0.90 0.05 0.05
Matches are distributed among these distances:
112 29 0.13
113 14 0.06
114 8 0.04
115 10 0.05
116 42 0.19
117 101 0.46
118 7 0.03
120 7 0.03
ACGTcount: A:0.45, C:0.09, G:0.12, T:0.34
Consensus pattern (114 bp):
TAAAAATAAATTTTCAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATA
AAATTTCAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCC
Found at i:5361 original size:58 final size:58
Alignment explanation
Indices: 5189--5536 Score: 524
Period size: 59 Copynumber: 6.0 Consensus size: 58
5179 TTTCTTTAAA
* *
5189 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT--AAATTTTC-AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
* * * * * *
5250 TGAAAATCAAAATTTCCAAAAAATATTTTTAGGGAAAAGTTGAAAGTAGCAATTTTCCC
1 TAAAAAT-AAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
*
5309 TAAAAATAAATTTTCAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
5367 TAAAAATAAATTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTC-AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
*
5426 TAAAAATAAATTTTC-AAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAA-TTTCCT
1 TAAAAATAAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
*
5482 TAAGAATAAA-TTTCAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATAAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
5537 CTACACAAAG
Statistics
Matches: 266, Mismatches: 18, Indels: 11
0.90 0.06 0.04
Matches are distributed among these distances:
55 25 0.09
56 32 0.12
57 34 0.13
58 60 0.23
59 103 0.39
60 6 0.02
61 6 0.02
ACGTcount: A:0.45, C:0.09, G:0.12, T:0.34
Consensus pattern (58 bp):
TAAAAATAAATTTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:6885 original size:26 final size:26
Alignment explanation
Indices: 6856--6908 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
6846 CCGATCCGAT
6856 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6882 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6908 C
1 C
6909 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:9052 original size:26 final size:26
Alignment explanation
Indices: 9002--9054 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
8992 CTGGTCCGAT
**
9002 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
9028 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
9054 C
1 C
9055 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12394 original size:26 final size:26
Alignment explanation
Indices: 12365--12417 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12355 CCGGTCCAAT
12365 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12391 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12417 C
1 C
12418 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12884 original size:893 final size:893
Alignment explanation
Indices: 9886--15284 Score: 7220
Period size: 894 Copynumber: 6.1 Consensus size: 893
9876 TGCACTTCCA
* * * *
9886 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * *
9951 ACGAGCAGGCGGGCAGGCGGGCACTACGCCAGCCACAGAGACGGGATGCACAAGCCGTGGATCGA
66 AC--G-A-GCGGGCGGGCGGGCACTACTCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * ** *
10016 TAGGGTGGTAGTTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCGT
127 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTT
* * *
10081 GTAAATTCATACAATGGTGCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCT
192 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTT
* *** *
10146 ATTTTTCACGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTTAAATTTTTTTGGAAGGAG-TT
257 ATTTTTCATGATTTTTGAAACTTTTTATTGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTT
* * * *
10210 TGTCCCCAAACTTGGTAGACATGATCTTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAA
322 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
10275 AAACTCGAAGTGTACAACATGTTGTGACCATTTGATAAAAGTGTCCCCATTTCA-ATCACTTTAA
387 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA-CACTTTAA
* **
10339 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTT
451 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
* *
10404 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCGCACATCATGTGCGCA
516 TGATGAGGGATAGGGGGCCAATATAAGCGCCAAGTACCAGCACCCAT-CTCACATCATGTGCGCA
* * *
10469 CA-CCCCCC-G------G-TCGCTGGAA-CCCAATACCGTCGGTCAGG---T----T--T-CTCC
580 CACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCC
* *
10514 GGCGATGGTGCCCCGACGAAG-AAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGTTGCC
645 GGTGATGGTGCCCCG-CGAAGAAAAATGTGGCACCAGCACATGC-CGAGCCCAGCATGTGCTGCC
** *
10578 ACAACCCTCGGTCC-G---G-TC-----C---------A------AT-CTTAGATTGGGAATGAA
708 GTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* *
10617 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAAGAGGGGTGGG
773 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC-AGAGGGGCGGG
* * * **
10682 ATGCGCAAGCCGAGGATCAACCGGGTCCCCCTCTACGTGCTGCCGATCCTGTTGTCG
837 ATGCTCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGTCG
* * ** * *
10739 CAACTCTCAGTCTGATCCAATCTTAGAATGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
10804 ACAAGCGGACGGGCGGACGGGCACTACGCCGGCTAGAGAGAAGGGATGCGCAAGCCGTGGATCGA
66 AC--G-AG-CGGGCGGGCGGGCACTACTCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * **
10869 TAGAGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
127 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTT
10934 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTT
192 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTT
* * *
10999 ATTTTTCACGATTTTTGAAACTTTTTGTTGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
257 ATTTTTCATGATTTTTGAAACTTTTTATTGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTT
* *
11064 TGGCCCCAAACTTAGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
322 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* *
11129 AACCTCGAAGTGTACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
387 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
11194 GGTTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
452 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
* *
11259 GATGAGGGATAGGGGGCCAATATAAGCACCAAGTACCAGCACACATCGT-ACATCATGTGCGCAC
517 GATGAGGGATAGGGGGCCAATATAAGCGCCAAGTACCAGCACCCATC-TCACATCATGTGCGCAC
* * **
11323 A-CCCCCCGG-CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-CGACGATGCTCCG
581 ACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCG
* * *
11385 GTGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCCTGAGCCGAGCATGTGCTGCCA
646 GTGATGGTGCCCCG-CGAAGAAAAATGTGGCACCAGCACATGCC-GAGCCCAGCATGTGCTGCCG
* * * *
11450 CAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGATA
709 TAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA-A
* *
11515 -TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCTGCCGGCCAGAGGGGCGGGA
773 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * *
11579 TGCTCAAGCC-AGGGATCGACCGGGTCTCCCTCTGCGTGCTGCCGATCTTGCAGCCG
838 TGCTCAAGCCGA-GGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGTCG
* * * * * *
11635 TAACTCTCGGTCTGATCTGATCTTA-CTCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAA
1 CAACCCTCAGTCTGGTCTGATCTTAGAT-TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * *
11699 AACGAGCGGGCGGGTGGGCACTA-TACCGGCCAGAGAGACGGGATGCACAAGCCATGGATCGATA
65 AACGAGCGGGCGGGCGGGCACTACT-CCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
*
11763 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGT
129 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGT
*
11828 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTTTAT
194 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTAT
* * * * *
11893 TTTTCATGATTTTTGAAACTTTTTA-TGACTCGAGATTTTTTAAAAATATTTTGGAAGGCGTTTT
259 TTTTCATGATTTTTGAAACTTTTTATTG-TTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTT
*
11957 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAA
323 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
*
12022 AACTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
388 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
12087 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
453 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
* *
12152 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATTATGTGCGCACA-
518 ATGAGGGATAGGGGGCCAATATAAGCGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACAC
** * ** *
12216 CCCCCCGGCCCCCGCGATCATC-AAACCCCAATGCCGTTGGTCAAGTTCTCCGGTGATGCTCCGG
583 CCCCCCGGCCCCC-CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGG
* * * * *
12280 CGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCTCGACCCCAGCATTTTCTGCCGT
647 TGATGGTGCCCC-GCGAAGAAAAATGTGGCACCAGCACATGC-CGAGCCCAGCATGTGCTGCCGT
*
12345 AACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
710 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* *
12410 CCGTATGCCTAAGTCAACCCACGAATCGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATG
775 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * ** * *
12475 CTCAAGTCGGGGATCGACCGGGTCCCTTTTTGCGTGCTGCTGATCCTACTGTCG
840 CTCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGTCG
* *
12529 CAACCCTTAGTCTGGTCTGATCTTAGATTAGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AG
1 CAACCCTCAGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA-
** * * * * *
12593 AACGAGTAGACGGGCGGGCATTACTCCGGCCAGAGAGATGGGAT-CGCAAGTCGTGGATCGATAG
65 AACGAGCGGGCGGGCGGGCACTACTCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
*
12657 GGTGGTAGGTGGGTTTAGGCACATCTTCATGTTTCTGTGTGCCAATGCCATTTTTATGGCTTGTA
130 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTA
*
12722 AATTGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATT
195 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATT
* *
12787 TTTCATGATTTTTGAAACTTTTTGTTGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGG
260 TTTCATGATTTTTGAAACTTTTTATTGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGG
* * *
12852 CCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAC
325 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * * *
12917 CTCGAAGTGTACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAAATACTTTAATGGT
390 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * * *
12982 TACTGGCAGCAAACCTGTAAAATCTAAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGAT
455 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
* * *
13047 GAGGGATAGGGGGCCAATATAAGCACCAAGTACCAGCACCCATCGT-ACATCATGTGCGTACAGC
520 GAGGGATAGGGGGCCAATATAAGCGCCAAGTACCAGCACCCATC-TCACATCATGTGCGCACACC
* * * *
13111 CCCCCGGCCCCTCGATCGCCAGAACCTCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGTG
584 CCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGTG
* * *
13176 ATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAA
649 ATGGTGCCCCG-CGAAGAAAAATGTGGCACCAGCACATG-CCGAGCCCAGCATGTGCTGCCGTAA
* * *
13241 CCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCC
712 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * *
13306 GTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCTGCCAGCCAGACGGGCGGGATGCT
777 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCT
* * * * * * *
13371 CAAGCC-AGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCTTGCAGCCA
842 CAAGCCGA-GGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGTCG
* * * * * *
13423 TAACCTTCAGTCCGGTCCGATCTTA-CTCTGGGAATGAACTCCATATGCCTAAGCCAACCGACGA
1 CAACCCTCAGTCTGGTCTGATCTTAGAT-TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* *
13487 AACGAGCGGGCGGGTGGGCACTA-TGCCGGCTAGAGAGACGGGATGCGCAAGCCATGGATCGATA
65 AACGAGCGGGCGGGCGGGCACTACT-CCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* *
13551 GTGTGGTAGGTGGGTTTAGG-------T-ACA--TCTGTGTGCCAATGCCATTTTTATGGCTTGT
129 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGT
* **
13606 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCCAT
194 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTAT
* * * *
13671 TTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTTAAATTTTTTTGGAAGGAGTTTCG
259 TTTTCATGATTTTTGAAACTTTTTATTGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTG
* * *
13736 GCCCCAAACTTGGTTGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAATAATTCAGCTAAAA
324 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* * *
13801 ACTC-ATATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTGAATG
389 ACTCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* *
13865 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTG
453 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
* ** * *
13930 ATGAGGGATAGGAGGCCAATATAATAGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACAC
518 ATGAGGGATAGGGGGCCAATATAAGCGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACAC
* ** *
13995 CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCTGCCGGTCAGGTTCTCTAGTGATGCTCCGA
583 CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGG
* * * *
14060 CGATGGTGCCCCGGCGAAGAAAATTGTGGCACCAGTACATGCCCGAGCCCAGCATGTGCTGCTGT
647 TGATGGTGCCCC-GCGAAGAAAAATGTGGCACCAGCACATG-CCGAGCCCAGCATGTGCTGCCGT
*
14125 AACCCAT-GGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
710 AACCC-TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * * * *
14189 TCCATATGCCTAAATCAACCCATGAAATGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGTGGGAT
774 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * **
14254 GCGT-AAGCCGAGGATCGGCCGGGTCCCCCTCTGCATGCTGCCGAACCTACTACCG
839 GC-TCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGTCG
* * * *
14309 CAACCCTCAGTGTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCGTAAG-CAACCGACGAA
1 CAACCCTCAGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
14373 ACGAGCGGGTGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
66 ACGAGCGGGCGGGCGGGCACTACTCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * *
14438 TTGGTAGGTGGGTTTAGGCACATCTT-ATATTTCTGCGTGCCAATGCCATTTTTATTGCTTGTAA
131 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAA
* * *
14502 ATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTT
196 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTT
** ** ** * * * *
14567 TTCATGATTTTCAAAACTTTTTACAGTTCAAGATTTTTTAAAATTTTTTCGGCAGGAGTTTCGGT
261 TTCATGATTTTTGAAACTTTTTATTGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGC
* * *
14632 CCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAAT
326 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
14697 TCGAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
391 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
14762 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
456 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
* * *
14827 AGGGATAGGGGGCCAATATAAGGGCCTAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
521 AGGGATAGGGGGCCAATATAAGCGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCC
* * * *
14892 CCCGGCCCCTCCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCTGATGATGCTCCGATGA
586 CCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGTGA
* * * *
14957 TGGTGCCCCGGTGAAGAAAAATGCGGTACCAGCACATGACAGAGCCCA-CATGTGCTGCCGTAAC
650 TGGTGCCCC-GCGAAGAAAAATGTGGCACCAGCACATG-CCGAGCCCAGCATGTGCTGCCGTAAC
* * *
15021 CCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGTTTAGACTGAGG-ATGAACTCT
713 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG-GGAATGAACTCC
* * ** * *
15085 GTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGTAGTGGGATGCG
777 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCT
*** * * * * *
15150 CAAGCCGAGGATCGGTGGGGTCCCCTTCTGCGTCCTGTCGATCCTACTATCA
842 CAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGTCG
** *
15202 CAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
15267 ACGAGTGGGCGTGCGGGC
66 ACGAGCGGGCGGGCGGGC
15285 GGGCCAATAT
Statistics
Matches: 4031, Mismatches: 415, Indels: 159
0.88 0.09 0.03
Matches are distributed among these distances:
852 1 0.00
853 315 0.08
854 223 0.06
855 1 0.00
859 1 0.00
860 7 0.00
861 18 0.00
864 1 0.00
869 1 0.00
870 24 0.01
871 51 0.01
872 1 0.00
875 1 0.00
876 2 0.00
881 1 0.00
884 1 0.00
885 481 0.12
886 300 0.07
887 5 0.00
888 1 0.00
890 1 0.00
891 3 0.00
892 486 0.12
893 694 0.17
894 1185 0.29
895 44 0.01
896 117 0.03
897 64 0.02
898 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
CAACCCTCAGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACGAGCGGGCGGGCGGGCACTACTCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTT
TTCATGATTTTTGAAACTTTTTATTGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGC
CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
AGGGATAGGGGGCCAATATAAGCGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCC
CCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGTGAT
GGTGCCCCGCGAAGAAAAATGTGGCACCAGCACATGCCGAGCCCAGCATGTGCTGCCGTAACCCT
CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCTCAAG
CCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGTCG
Found at i:13295 original size:26 final size:26
Alignment explanation
Indices: 13259--13311 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13249 CTGGTCCGAT
13259 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13285 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13311 C
1 C
13312 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14174 original size:26 final size:26
Alignment explanation
Indices: 14145--14197 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14135 CCGGTCCGAT
*
14145 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
14171 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
14197 C
1 C
14198 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:15068 original size:26 final size:26
Alignment explanation
Indices: 15039--15089 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15029 CAGTCCGATC
15039 TTAGACTG-GGAATGAACTCCGTATGT
1 TTAGACTGAGG-ATGAACTCCGTATGT
*
15065 TTAGACTGAGGATGAACTCTGTATG
1 TTAGACTGAGGATGAACTCCGTATG
15090 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGAGGATGAACTCCGTATGT
Found at i:16421 original size:26 final size:27
Alignment explanation
Indices: 16392--16449 Score: 100
Period size: 26 Copynumber: 2.2 Consensus size: 27
16382 CCGGTCCGAT
*
16392 CTTAGACTGGGAATGAACTCGGTATG-
1 CTTAGACTGGGAATGAACTCCGTATGC
16418 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
16445 CTTAG
1 CTTAG
16450 TCAACCCACG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 25 0.83
27 5 0.17
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCGTATGC
Found at i:17311 original size:26 final size:26
Alignment explanation
Indices: 17282--17334 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17272 CTGATCCGAT
17282 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17308 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17334 C
1 C
17335 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18941 original size:26 final size:26
Alignment explanation
Indices: 18905--18955 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18895 TGGTCCGATC
18905 TTAGACTGGGAATGAACTCCATATGT
1 TTAGACTGGGAATGAACTCCATATGT
*
18931 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
18956 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGT
Found at i:19376 original size:26 final size:26
Alignment explanation
Indices: 19338--19393 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
19328 CCGGTCCGAT
19338 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* **
19364 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
19390 CTTA
1 CTTA
19394 AGCCAACCGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:20115 original size:26 final size:26
Alignment explanation
Indices: 20076--20128 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20066 CCGGTCCGAT
20076 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
20102 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
20128 C
1 C
20129 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:21025 original size:26 final size:26
Alignment explanation
Indices: 20975--21027 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20965 CTGGTCCGAT
* **
20975 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21001 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21027 C
1 C
21028 CTAAGTCACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21899 original size:26 final size:26
Alignment explanation
Indices: 21863--21915 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21853 CTGGTCTGAT
21863 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21889 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21915 C
1 C
21916 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:23656 original size:26 final size:26
Alignment explanation
Indices: 23620--23672 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23610 CTGATCTGAT
*
23620 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
23646 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
23672 C
1 C
23673 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25413 original size:26 final size:26
Alignment explanation
Indices: 25384--25436 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25374 CTGGTCCGAT
25384 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
25410 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25436 C
1 C
25437 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:26323 original size:26 final size:26
Alignment explanation
Indices: 26287--26339 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
26277 TCGGTTTGAT
26287 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26313 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26339 C
1 C
26340 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27210 original size:26 final size:26
Alignment explanation
Indices: 27180--27232 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27170 CCGGTCTGAT
27180 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27206 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27232 C
1 C
27233 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27364 original size:893 final size:893
Alignment explanation
Indices: 15516--28014 Score: 11667
Period size: 903 Copynumber: 13.9 Consensus size: 893
15506 CCATTCTGAT
* * * * *
15516 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAACATGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
15581 CGGCCAGAGGGGTGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTATGTGCTGCAGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATC-GGTCCCCCTCTACGTGCTGCCGATCC
* ** * * * ** *
15646 TGCTACCGCAACCCTTGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAA
130 TACTGTCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
15711 CCGACGAAATGAGCGGGCGGGCGGGCGGGCGGGAACTACGCTGACCAAAGAGACGGGATGCGCAA
195 CCGACG-AA--A-CGAGCGGGCGGGCGGGC----ACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
15776 GCCATAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
252 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
15841 TTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCTAGAC
317 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
15906 -ACTCGTTTTTTATTTTTCACGATTTTCTAAACTTTTTGCTGTTCGGGATTTTTTAAAATTTTTT
382 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
*
15970 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
447 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * * *
16035 AAATTCAGCAAAAAAGTTGAAGTGTATAAGATTTTGTCACCATTTGAAAAAAATGTCCCCATTTC
512 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
16100 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGGTCTTTAAGGGGGTGTGAG
577 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
16165 TTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
642 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
*
16230 CATGTGCG-A-ACTCCCCCTGGCCCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTC
707 CATGTGCGCACAC-CCCCCCGGCCCCCCCGATCGTCGGAA-CC-AATGCCGCCGGTCAGGTTCTC
* * * ** * * * *
16293 C-AGCGATGCTCTGACGATGGTGCCCTGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCT
769 CGA-CGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCC
* * * *
16357 AGCATGTGCTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCGGTATG
833 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
16418 CTTAGACTGGGAATGAACTCCGTATGCCTTAGTCAACCCACGAAACGAGTGTGCAGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * * * *
16483 AAGCTAAAGGTGCGGGATTCGCAAGTCGAGGATCGGTCAGGTCCCCCTCTACGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATC-GGTCCCCCTCTACGTGCTGCCGATCC
* * * * * * *
16548 TGCTGCCACAACCCGCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
130 TACTGTCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
16613 TCGACGAAACGA----GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG-GCAAGCCGTGGA
195 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * * *
16673 TCGATAGAGTGGTAGGTGGATTTGGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
260 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * *
16738 GCTTGTAAATTCATACAAGGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCATT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * *
16803 TTCTATTTTTCACGATTTTCCAAACTTTTTGCTGTTCGGGATTTTTTAAAATTTTTTCGAAAGGA
390 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
**
16868 GTTTTGGCCCCAAACTTTCTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
455 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * * * *
16933 CAAAAAAGTCAAAGTGTATAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTT
520 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
16998 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
585 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
17063 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
650 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * *
17128 CACA-CCCCCTGGCCCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGC
715 CACACCCCCCCGGCCCCCCCGATCGTCGGAA--CCAATGCCGCCGGTCAGGTTCTCCGACGATGC
* * ** * * *
17192 ACCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCAACCCCAGCATGTGCT
778 TCCGGCGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCT
* * * *
17257 ACCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
843 GCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* *
17308 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * **
17373 CGGCCAGAGGGGCGGGATGCACAAGCCGAGGATTGGCCGGGTCCCCCTATGCGTGCTGTTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATC-GGTCCCCCTCTACGTGCTGCCGATCC
* ** ** * * *
17438 TGCTACCACAACCCTCATTTTGGTTTGATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAA
130 TACTGTCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** ** * *
17503 CCGATGAAATGAACGGGCGACGGGCGGGCGGGCACTATACCAACCAAAGAAACGGGATGCGCAAG
195 CCGACG--A--AAC--GAG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
17568 CCGTTGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
253 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
17633 TCTTATGGCTTGTAAATTCATACTAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGAC
318 TTTTATGGCTTGTAAATTCATAC-AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** *
17698 GACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-AGGATTTTTTAAAAATATT
382 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGA-GATTTTTT-AAAATTTT
* * * *
17762 TGCAGAAGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAA
445 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
17827 AAAAATTCAGCCAAAAACTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
510 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
17892 TTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
575 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
17957 AGTTCTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCAC
640 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * *
18022 ATTATGTGCGCACA-CCCCCCGGCCCCCCCGATCATCGAAATCCCAATGCTGTCGATCAGGTTCT
705 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAA--CCAATGCCGCCGGTCAGGTTCT
* * * * * *
18086 CCGACGATGCTCCGGTGGTGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
768 CCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCC
* * * *
18151 AGCATGTGCTGCTGCAACCATCGGTCCGGTATGATCTTAGACTAGGAATGAACTCCGTATG
833 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * ** * *
18212 C-----CT---AA-G----CC--A-ACCGACG--AAACGAGCG-GGCG-GACGGGCGGGCACT-A
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAACGAG-CGTGCGGGCGCTCA
* * * * * * ****** ** *
18256 CGCCGGCCAGAGAGACCGGATACGCAAGCCGTGGATCGATAGGGT-GGTAGGTGGGT-TTAGGCA
64 -GCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGAT-CGGTCCCCCTCTACGTGCT--GC-
* * *** * * * * ***
18319 C-ATCTTCATATCTCTGCATGCCAATGCCATTTTTATGG-CTTGTAAATTCATACAATGGTCCCT
124 CGATC--C-TA-CTGT-CA---CAA--CCCTCGGTCTGGTC-TG---A-TCTTAGACTGG-GAAT
* * ** * * * ** * * ** ****** **
18382 TAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACT
173 GAA--C-TC-CGT-ATGCCT-AAGCCAA-CCGAC-GA--AACGA----GCGGGCGGGCGGGCAC-
** * * * ***** * * ** ** * ***
18447 TTTTG-CGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCA-AACTTGGTAGAC
223 -TACGCCGG--CCAGA-----GAGACGGGATGCGCAAGCCG---TGGATCGATAGGGTGGTAG--
* * * ** ** * ** *
18510 GT-GATCCTT--GTATAT-TT--T-TTT-TGCATGCACAA--AAAAATTCA--GC-TAAAAAATC
275 GTGGGT--TTAGGCACATCTTCATATTTCTGCATGC-CAATGCCATTTTTATGGCTTGTAAATTC
** ** * * * *** * **
18562 GAGGTGAACAA-AAT-TTTGTGACCCTTTGA-AAAAAGTGTCCCCATTTC-AGAC-ACT--TTAA
337 -A--T--ACAATGGTCCCT-TAAGCC-TTCACGTGAAGT-T--TCATGGCAAGACGACTCGTT--
* * ** * * * * * * * * ** **
18620 TGGCTA-CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT-GTGAGTTCTCGAGG
390 T-TCTATTTTTCA-C-GA--T-T----T-TCAAA-ACT-TTTTA-CGGTTCGAGATTTTTTAAAA
** * ** ** * * ** * * * * **
18683 TTTGAT--G-AGG-GATAGGGGGCCAATA-TAAGGGCCAAGTACCAGCACCCATCGCACATCATG
441 TTTTTTCGGAAGGAGTTTTGGCCCCAA-ACT--TGG--TAG-ACGTG-ATCC-TTGTA-TTTTTG
* * ******* * * *** * * * * * **
18743 TGCGGACAACCGC-CCCCGGCCTCCCCAATCATCGGAACCCCAATGCTGT-CGGTCAGGTTCTCC
497 T-TGG-C-A-TGCACAAAAAAAT--TC-AGC-TAAAAACTCGAA-G-TGTAC---AAGATTTTGT
* * *** ** *** *** * * *
18806 GACGATGCTCCGGCGACGGTG-CCCCGA-CGAAGA-AAAAT-CTGGC-AC---CAGC--ACATGC
549 GACCAT--T-TGAAAAAAGTGTCCCC-ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
** * * ** * *** * ** * * *
18861 CCAAGCCCAGCTTG-TGCTGTCGCAACCCTCGGTCTG-G-TC-CGATCTTAGACTG-GGAAT-GA
610 AAAATCTCA-AATGCT-CT-T--TAA--GGGGGTGTGAGTTCTCGAGGTTTGA-TGAGGGATAGG
*** * ** * * *
18920 ACTCCATATGTTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-AG-A-AACGAGCGT
667 GGGCCA-A--TATA-A--GGG--CCAA----GTA--CC--AG-C-ACCCATCGCACATC-A-TGT
**** * ** ***** ** ** * * *
18982 GCGGGTGCTCAGCCGGCCAGAAGGA-C--CGGATGTGCAAGTTGAGGATCGGTC-GAGTCCCCCT
712 GCGCACACCCCCCCGGCCCCCCCGATCGTCGGA--ACCAA--TGCCG-CCGGTCAG-GT-TCTC-
* * * *** *** ** * *
19043 CTAC-ATGCTTTCGATCCTGCTACTGCAACCCTCGGTCTGATCCAATCT-TAG-ACTC-GGA-AT
769 CGACGATG----C--TCCGGCGA-TGGTGCCC-CGG-C-GAAGAAAAATGCAGCAC-CAGCACAT
* * * *** ** ** ****** * *
19103 GAACTCCGTATGCCTA--A-G-CCTACCGACCAAACGAGCGAG-AGGGTGGGCGGGCGGGCGGGC
823 G--CT-CG-A-GCCCAGCATGTGCTGCCG--C-AACCCTCG-GTCCGGTCTGATCTTAGACTGG-
*** * ***
19163 GGGCGAGCACTACGCCGG
878 GAATGA--ACTCCGTATG
* * ** * * * * * **** ** * * *
19181 C-CAGA--GAGACGGGA-TGCGCAAGCCGT-GGATCGATA-GGGTGGCACTA-C--GCCGGCCCT
1 CTTAGACTGGGAATGAACTCCGTATGCC-TAAG-TC-A-ACCCACGAAACGAGCGTGCGGGCGC-
* * ** * * * *** * * * * **
19237 TTTATGGCTTCTCCGATGATGGTGCCCTGGGCAAGAAAAACGTGGCACCAGCA-CATTCTCAAGC
61 -TCA-GCCGGC-CAGA-G-GGGCGGGATGCGCAAG----CCGAGG-ATC-G-ATCGGTC-C---C
* * * * * ** * ** *
19301 CCAGC-ATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCAT-ATG
110 CC-TCTACGTGCTGCCG--ATCCT-A---CTGT-C-A-C-AACCCTCGGTCTG--GT-C-TGAT-
* * * **
19364 CTTAGACTGGGAATGAACTCTGTATGCTTAAGCCAACCGATGAAACGAGCGGGCAAGCGGGCACT
159 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
* * * *
19429 ACGCGGGCCAGAGAGATGGGATGCGCAAGCCATGGATCGATAGGGTGGTTGGTGGGTTTAGGCAC
224 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * * *
19494 ATCTTCGTTTTTCTGCATGCCAATACCATTTTTATGGCTTGTAAACTCATACAATGGTCCCTTAA
289 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* **
19559 GCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATAATTTTCAAAACTTTT
354 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTT
* * * *
19624 TGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA-TTTTCGGTCCCAAACTTGGTAGACGTGA
419 TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GGCCCCAAACTTGGTAGACGTGA
* * * * *
19688 TCCTTGTATTTTTTTTGGAATGCAGAAAAAAATTCAGCTAAAAACTTGAAGTATACAAGATTTTG
483 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
19753 TGACCATTTCAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAA
548 TGACCATTT-GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
19818 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATAT
612 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * * **
19883 AAGGGCCAAGTACTAGCACCCATTGCACATTATGTGCGCACACCCCCCCGACCCCCCCGATCACC
677 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTC
* * *
19948 GGAACCCCAATGCCGCCGGTCAGGTTCTCC-AGCGATGCTCCGACGATGGTTCCCCGGTGAAGAA
742 GGAA--CCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGGCGATGGTGCCCCGGCGAAGAA
** * * *
20012 AAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATC
804 AAATGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATC
* *
20077 TTAGACTGAGAATGAACTCCATATG
869 TTAGACTGGGAATGAACTCCGTATG
* * * *
20102 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAACGTGAGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
20167 CAGCCAGAGGGGCGGGAAGCGTAAGCCGGGGATCGATCGGGTCCCCCTTTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATC-GGTCCCCCTCTACGTGCTGCCGATCC
* * * * *
20232 TGCTGCCACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTTTGCCTAAGCCAA
130 TACTGTCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * *
20297 CCGATGAAAGGAGCGGGTGGGCGAGCGGGCACTATGCCGACCAAAGAGGCGGGATGCGCAAACCG
195 CCGACGAAACGAGC----GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * * *
20362 TGGATCGATAGGGTGGTCGGTGGGTTTAGGTACATCTTTATATTTCTACGTGCCAATGCCATTTT
256 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
20427 TATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGGCT
321 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * *
20492 CGTTTTGTATTTTTCACTATTTTTGAAAA-TTTTTACGGTTCGGGATTTTTTAAAA-TTTTTCGA
386 CGTTTTCTATTTTTCACGA-TTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
*
20555 AAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
450 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* ** *
20620 TTGAGCTAAAAACTCGAAGTGTGTAAGATTTTGTGACCATTTGAAAAACGTGTCCCCATTTCAGA
515 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
20685 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTC
580 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * * *
20750 TTGAGGTTTGATGAGGGATAGGGGGCGAAAATGAGGGCCAAGTACCAGCCCCCATCGCACATCAT
645 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * ** * *
20815 GTGCACACACCCCCCCGGCCCACCCGTTCGTCAGAACCCCAATGTCATCGATCAGGTTCTTCGAC
710 GTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAA--CCAATGCCGCCGGTCAGGTTCTCCGAC
* * * *
20880 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCACGAGCCCAGCAT
773 GATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCAT
* * * **
20945 GTGCTGCCGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTTTGTATG
838 GTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
21001 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCACCCCACGAAACGAGCGTACGGGTGCTC-GA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-
* * * * * * *
21065 CCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCAACCGGGTCCCCCTCTATGTGCTGTCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATC-GGTCCCCCTCTACGTGCTGCCGATC
* * ** * * *
21130 TTGCTACCACAACCCTTGGTCCGGTCCT-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCT
129 CTACTGTCACAACCCTCGGTCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
21194 AACCGACGAAATGA----GCGGGCGGGCACTACGCCGCCCAGAGAGACGGGATGCGCAAGCCGTG
193 AACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
21255 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
258 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
*
21320 TGGCTTGTAATTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
323 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* ** *
21385 TTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTCGAGATTTTTTAAACTTTTTTCGGAAG
388 TTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
* * * *
21450 GATTTTTGGCCCCAATCTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTC
453 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
21515 AGCCAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
518 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
21580 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCG
583 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * *
21645 AGGTTTGATGAGGGATAGGAGGCCAATTTAAGGGCCAA-TTCCAGCACCCATCACACATCATGTG
648 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
** * * *
21709 CGCACA--CCCCC-AACCCCCCGATCGTCAGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGAT
713 CGCACACCCCCCCGGCCCCCCCGATCGTCGGAA--CCAATGCCGCCGGTCAGGTTCTCCGACGAT
* * ** * * * * * * * *
21771 GCTTCGGCGATGGTTCCCCAACGAAAAAAAATACGGCACCAACACATGCCCAAGCCCAGCATCTA
776 GCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCATGTG
* * * *
21836 CTGCCGCAGCACTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATG
841 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* *
21889 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** * * *
21954 CGGCCAAACGGGCGGGATGCTCAAGCCGAGGATCGACCAGGTCCTGCTATATGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATC-GGTCCCCCTCTACGTGCTGCCGATCC
* * * * ** *
22019 TATTG-CTGCAACCCTCCGTCCGGTCCAATCTTGGACTGGGAATGAACTCCGTATGCCTAAGCC-
130 TACTGTC-ACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
22082 ACATGACGAAACGA--------GCGGGCACAACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
194 AC-CGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
22139 GATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
258 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* *
22204 TGGCTTGTAAATTCATACAATGTTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACCACTCG
323 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * ** * *
22269 TTTTTTATTTTTCATGATTTTTAAAACTTTTTGTGGTACGAGATTTTTTAAAATTTTTTTCGAAA
388 TTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTTCGGAA
* *
22334 GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAACAATT
452 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* *
22399 CAGCTAAAAACTCGAAGTGTACAAGATTTTGCGACCATTTCAAAAAAGTGTCCCCATTTCAGACA
517 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
22464 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
582 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
22529 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CAGCACCCATCGTACATCATGT
647 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * * * * *
22593 GTGCACA-CCCCCCGACCCGCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGA
712 GCGCACACCCCCCCGGCCCCCCCGATCGTCGGAA--CCAATGCCGCCGGTCAGGTTCTCCGACGA
* * * ** * * *
22657 TGCTCTGACGTTGGTGCCCCTACGAAGAAAAATGC-GACACCAGCACTTGCCCGAGTCCAGCATG
775 TGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCAG-CACCAGCACATGCTCGAGCCCAGCATG
** *
22721 TGCTGTTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATG-A------A--
839 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
22767 C-T---CT--G--T--A-T--G---G-CTAAGTCAACCCATGAAACGAGAGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ** *
22815 CGGCCAGAGGGGTGGGATACGCAAGTCGGGGATCGATCGGGTCCCTCTCTGTGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATC-GGTCCCCCTCTACGTGCTGCCGATCC
* * * * *
22880 TACTGTCACAACCTTCAGTCTGGTCCGATCTTAGACTGGCAATGAACTCCGTATGCCTAACCCAA
130 TACTGTCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
22945 CCGACGAAACGAGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGTA
195 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
*
23010 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTTGCATGCCAATGCCATTTTTAT
260 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTGCATGCCAATGCCATTTTTAT
* *
23075 GGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* ** * *
23140 TTTTTATTTTTCACGATTTTTGAAATTTTTTACGGTTCTG-GATTTTTGAAAATTTTTTC-GAAT
389 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTC-GAGATTTTTTAAAATTTTTTCGGAA-
* * *
23203 GGGGTTTTGGCCCCTAACTTGGTAGACGTGATCCTTGTAGTTTTT-TTGGTATGCACAAAAAAAT
452 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAAT
*
23267 TCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
516 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
23332 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
581 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
23397 CGAGGTTTGATGA-GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCCATCGCACATCATG
646 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
** * * * *
23461 TGCGCACACCGCCCCCGG-CCCCCCGATCACCGGAACCTCAATGTCACCGGCCAGGTTCTCTGAC
711 TGCGCACACC-CCCCCGGCCCCCCCGATCGTCGGAA-C-CAATGCCGCCGGTCAGGTTCTCCGAC
* * * * * *
23525 AATGCTCCGGTGATGGTGCCCCAGCGAAGAAAAATGTAGCACCACCACATGCTTGAGCCCAGCAT
773 GATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCAT
* * * * *
23590 GTGCTACCGCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCTTATG
838 GTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
*
23646 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * **
23711 CAGCCATAGGGGTGGGATGCGCAAGCCGAAGATCGGCCAGGTCCCCCTCT--GTG-T---G---C
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATC-GGTCCCCCTCTACGTGCTGCCGATCC
* * * * * *
23767 TACCGT---AACCCTCGATTTGATCTGATCTTAGACTGGGAATGAACTACATATGCCTAAGCCAA
130 TACTGTCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * ** *
23829 CCGACGAAACGAGCAGGCGGACGGGTAGGCTCTACACCGGCCAGAGAGACGTGATAAGCAAGTCG
195 CCGACGAAACGAGC--G-GG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
23894 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
256 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
23959 TATGGCTTGTAAATTCATACAACGATCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACT
321 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
** * *
24024 CGTTTTCTATTTTTCGTGATTTTTAAAACTTTTTACGGTTCG-GTATTTTTTTAAAATTTTTTTG
386 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAG-A-TTTTTTAAAATTTTTTCG
**
24088 GAAGGAGTTTTGGCCCCAAAAATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
449 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
24153 ATGCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAG
514 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
24218 ACACTTTAATGGCTACTAGCAGCAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
579 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
24283 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCCATCGCACATCA
644 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
24348 TGTGCGAACA-CCCCCC-GACCCCCCAATCG-CTGGAACCCCAATGCCGCTGGTCAGGTTCTCTG
709 TGTGCGCACACCCCCCCGGCCCCCCCGATCGTC-GGAA--CCAATGCCGCCGGTCAGGTTCTCCG
* * * *
24410 GCAATGCTCCGGCGATGGTG-CCC--TG--G-----TG-A--A--TG-A-A--CT-----CCA--
771 ACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGC
* * *
24449 ATGTGCTGCCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATG
836 ATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* ** * * *
24507 CTTAAACTGGGAATGAACTTTGTATGCCTAAGTTAACCCATGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** *
24572 CGGCCAGAGGGGCCGAATGCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTACGTGCTATCGAGCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATC-GGTCCCCCTCTACGTGCTGCCGATCC
* ** * * * * *
24637 TGCTACCACAACCATCAGT-TCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTCAGCCG
130 TACTGTCACAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * **
24701 ATCGACGAAACGAATAGGCGGGCAGACGGGCGGGCACTACACCTACCAGAGAGACGGGATGCGCA
194 ACCGACGAAACG---A-GC-GG--G-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
24766 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
251 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
24831 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACA
316 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
24896 CGACTTGTCTTT-TATTTTTCACGATTTTCAAAACTTTTTGA-GTTTCGAGATTTTTTACAATTT
381 CGACTCGT-TTTCTATTTTTCACGATTTTCAAAACTTTTT-ACGGTTCGAGATTTTTTAAAATTT
* * * * *
24959 TTTGGGAAGGAGTTTTGGCCCTAAATTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCATA
444 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
25024 AAAAAAATCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTAT
509 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
25089 TTCAGACACTTTAATGGATACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
574 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
25154 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
639 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* ** * * *
25219 CATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGTAACCCTAATGCTACCAGACAAGTTC
704 CATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAA-CC-AATGCCGCCGGTCAGGTTC
* * * *
25283 TCCGATGATGCTCCGGTGATGGTGCCCCTGG-GAAGAAAAATG-TGACACCAGCACATGC-CCAT
767 TCCGACGATGCTCCGGCGATGGTGCCCC-GGCGAAGAAAAATGCAG-CACCAGCACATGCTCGA-
* * * *
25345 GCCCAGCATGTGCTGCCGTC-ACCCTGGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTAT
829 GCCCAGCATGTGCTGCCG-CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
25409 G
893 G
* * * ** * *
25410 CTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACACATGAAACGAGCGTATGGGGGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * *
25475 CGGCCAGAGGGACGGGATGCACAAGCCGAGGATCGGCCGAGTCCCCCTCTGCATGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCG-GTCCCCCTCTACGTGCTGCCGATCC
* * * * * **
25540 TGCTGTCACAACCCTCAGTCCGGTCAGATCTCAGACTGGGAATGAACTCAATATGCCTAAGCCAA
130 TACTGTCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
25605 CCGACGAAACGAGTGGGCGGACGGGCGGGCGGACACTACGTCGGCCAAAGAGACGGGATGCGCAA
195 CCGACGAAACGA-------G-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
25670 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
252 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
25735 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACAC
317 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
25800 GACTTGTCTTT-TATTTTTCACGATTTTCAAAACTTTTTGA-GTTTCGAGATTTTTTACAATTTT
382 GACTCGT-TTTCTATTTTTCACGATTTTCAAAACTTTTT-ACGGTTCGAGATTTTTTAAAATTTT
* * * *
25863 TTCGGAAGGAGTTTTGGCCCTAAATTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCATAA
445 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
25928 AAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATT
510 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
25993 TCAGACACTTTAATGGATACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
575 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
26058 AGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCAC
640 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
26122 ACCATGTGCACACACACCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTTAGGTTCT
705 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAA--CCAATGCCGCCGGTCAGGTTCT
* * * *
26187 CCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCTCAAGCCC
768 CCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCC
** * *
26252 AGCATGTGCTGTAGCAACCCTCGGTTCGGTTTGATCTTAGACTGGGAATGAACTCCGTATG
833 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
*
26313 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
26378 CTGCCAGAAGGGCGGTATGCGTAAGCCGAGGATCGATCGGTTCCCCCTCTACGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGG-TCCCCCTCTACGTGCTGCCGATCC
* * * * **
26443 TACTGTCACAACCCTCGATCTAGTCTGATCTTGGACTAGGAATGAACTCCAAATGCCTAAGCCAA
130 TACTGTCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
26508 CTGACGAAATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
195 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
26573 TGGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGCCATTTTTATG
260 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * * * * * *
26638 GCTTGTAAATACATACAACGGTCCATTAAGCCTTCGCGTGAAGTTTCATGGCAAAACAACACGTT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
**
26703 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
390 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
* * *
26768 TTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAG
455 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
26832 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTT
520 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
26897 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
585 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
26962 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTAGCCATCACACATCATGTGCG
650 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * * *
27027 CAAACCCCCTCCGGCCCCCCCAATCGTCGGAA-CAACGCCGTCGGTTAGGTTCTCCGATGATGCT
715 CACACCCCC-CCGGCCCCCCCGATCGTCGGAACCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
** *
27091 CCGGTAATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTG
779 CCGGCGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTG
* * *
27156 CTGCAACCCTTGCTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
844 CCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
27206 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCTTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
27271 CTGCCAGAAGGGCGGTG-TGCGTAAGCCGAGGATCGATCGGTTCCCCCTCTACGTGCTGTCAATC
66 CGGCCAGAGGGGCGG-GATGCGCAAGCCGAGGATCGATCGG-TCCCCCTCTACGTGCTGCCGATC
** * *
27335 CTACTGTCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGAATGCCTAAACCA
129 CTACTGTCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
27400 ACTGACGAAATGAACGGGCGGGCGGGCACTACGCCGACCTGAAAGACGGGATGCGCAAGCCGTGG
194 ACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
27465 ATGGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAG-GTGCCAATGCCATTTTTA
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCATGCCAATGCCATTTTTA
* ** * * *
27529 TGGCTTGTAAATACATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGACAAAACAACAT-
323 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC-TC
* *
27593 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTATGGTTCGAGATTTTTTTAAATTTTTTCGGAA
387 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
* *
27658 GGATTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATT
452 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * * *
27722 TAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACGATTTG-AAAAAGTGTCCCCATTTCAAACA
517 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
27786 CTTTAATGGCTACTGGCAGCGAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
582 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
27851 GAGGTTTGATGAGGGATAGGGGGCCAATAAAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
647 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * ** * *
27916 GTGCACA-CCCCCCGGCCCCCCCAATCGTCAGAA-CAACACCGTCGGTCAGGTTCTCCGGCGATG
712 GCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCAATGCCGCCGGTCAGGTTCTCCGACGATG
* *
27979 CTCCGGAGATGGTGCCCCGGTGAAGAAAAATGCAGC
777 CTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCAGC
28015 TGCCCCTCTG
Statistics
Matches: 9574, Mismatches: 1546, Indels: 966
0.79 0.13 0.08
Matches are distributed among these distances:
861 298 0.03
862 4 0.00
863 6 0.00
864 1 0.00
865 1 0.00
867 2 0.00
868 34 0.00
869 304 0.03
870 262 0.03
871 10 0.00
872 2 0.00
873 55 0.01
874 3 0.00
875 1 0.00
876 278 0.03
877 252 0.03
878 11 0.00
879 1 0.00
880 3 0.00
882 2 0.00
883 1 0.00
884 276 0.03
885 267 0.03
886 69 0.01
887 324 0.03
888 598 0.06
889 194 0.02
890 754 0.08
891 239 0.02
892 378 0.04
893 651 0.07
894 216 0.02
895 282 0.03
896 111 0.01
897 47 0.00
898 6 0.00
899 486 0.05
900 110 0.01
901 244 0.03
902 324 0.03
903 1056 0.11
904 424 0.04
905 4 0.00
906 7 0.00
907 10 0.00
908 8 0.00
909 5 0.00
910 8 0.00
911 18 0.00
912 3 0.00
913 14 0.00
914 22 0.00
915 18 0.00
916 19 0.00
918 10 0.00
919 10 0.00
920 10 0.00
921 18 0.00
922 11 0.00
923 21 0.00
924 26 0.00
925 24 0.00
926 22 0.00
927 18 0.00
928 10 0.00
929 9 0.00
930 2 0.00
931 2 0.00
932 3 0.00
933 3 0.00
934 13 0.00
935 16 0.00
936 38 0.00
937 22 0.00
938 9 0.00
939 14 0.00
940 20 0.00
941 5 0.00
942 11 0.00
943 6 0.00
944 2 0.00
945 2 0.00
946 6 0.00
947 10 0.00
948 14 0.00
949 10 0.00
950 10 0.00
951 15 0.00
952 21 0.00
953 23 0.00
954 26 0.00
955 17 0.00
956 5 0.00
958 2 0.00
959 4 0.00
960 3 0.00
961 7 0.00
962 14 0.00
963 27 0.00
964 6 0.00
965 17 0.00
966 20 0.00
967 15 0.00
969 9 0.00
970 3 0.00
971 12 0.00
972 8 0.00
973 6 0.00
974 16 0.00
975 22 0.00
976 16 0.00
977 8 0.00
978 1 0.00
979 7 0.00
980 9 0.00
981 5 0.00
982 11 0.00
984 3 0.00
985 7 0.00
986 6 0.00
987 1 0.00
988 8 0.00
989 3 0.00
990 6 0.00
991 4 0.00
992 7 0.00
993 5 0.00
994 2 0.00
995 1 0.00
996 6 0.00
997 16 0.00
998 3 0.00
999 8 0.00
1000 1 0.00
1001 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGTCCCCCTCTACGTGCTGCCGATCCT
ACTGTCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCCGGCCCCCCCGATCGTCGGAACCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
GGCGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCC
GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:28804 original size:26 final size:26
Alignment explanation
Indices: 28775--28827 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
28765 CCAGGCTGAT
28775 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28801 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
28827 C
1 C
28828 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29722 original size:26 final size:26
Alignment explanation
Indices: 29671--29723 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29661 CTTGTCCGAT
*
29671 CTTAGACTGGGAACGAACTTCATATG
1 CTTAGACTGGGAACGAACTCCATATG
* *
29697 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCATATG
29723 C
1 C
29724 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:30211 original size:897 final size:896
Alignment explanation
Indices: 28017--32195 Score: 4655
Period size: 898 Copynumber: 4.7 Consensus size: 896
28007 AATGCAGCTG
* * ** * * *
28017 CCCCTCTGTGTTCTGCCGATCCTGCTGTCGCAACCCTC-AGTCCGATCT-ACTCTTAGGCTGGGA
1 CCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGA-TCCGGTCTGA-TCTTAGACTGGGA
* * * * * ** *
28080 ATGAACTCCGTATGCCGAAGCCAACTGACGAAATGA---G-CGGGCGGGCGGGCACTGCGCCGGC
64 ATGAAATCAGTATGCCTAAGCCAACCGACAAAATGAGCGGACGGGCGGGCGGGCACTAAGCCGAC
* * * *
28141 CTGAGAGATGGGATGCGCAAGCCATAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC-T--T
129 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
*
28203 ATTTCTGCGTGCCAATGCCATTTTTATGGCTTCT-AAATTCATACAATGGTCCCTTAAGCCTTCA
194 ATTTCTACGTGCCAATGCCATTTTTATGGCTT-TAAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * * *
28267 CGTGAAGTTTCATGGCAAAACAAC-ACGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
258 CGTGAAGTTTCATGGCAAGACGACTA-GTTTTCTATTTGTCACGA-TTTTCAAAATTTTTACGGT
* * * * *
28331 TTGAGATTTTTTAAAATTTTTTTGGAAGGA-TTTTTGTCCCCAAACTTGGTAGACATGATCCTTG
321 TTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGT-CCCAAACTTGGTAGACGTGATCCTTA
28395 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
385 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* *
28460 TTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCA
450 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
28525 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGG-CCAATATAAGGGC
515 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGGGACCAATATAAGGGC
* *
28589 CAAGTACCAGCACCCATCACAC-CCAATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACC
579 CAAGTACCAGCACCCATCACACATC-ATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACC
* ** * * *
28653 CCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACAATGGTGCCCCGACGAAGAAAAATGCA
642 CCAATGCCGTC-GTCAGGTTCTCCGGCGATGCTCTGATGATGGAGCCTCAACGAAGAAAAATGC-
* ** * * * * * ** * *
28718 G-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAGCCTTGCTCCAGGCTGATCTTAGAC
705 GTCACCAGCACATGCCCGAGCCAAAAATCTACTGCCGCAACCCTCGGTCTTGTCCGATCTTAGAC
* * * * *
28782 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTAGGAAAC
770 TGGGAACGAACTTCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * *
28847 TAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAGGCCGGGGATCGGTCGGGTC
835 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGACGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * * * * *
28909 CCTCTCTACGTGCTGCCGATCCTACTACCACAACCCTCGCTTCGGTCTAATCTTAGACTGGGAAT
1 CCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAAT
* ** * * * ** *
28974 GAACTCCTTATGCCTAAGCCAATCGACGAAACGAGCGGGGGGGCGGGCGGGCACTACA-CCGGCC
66 GAAATCAGTATGCCTAAGCCAACCGACAAAATGAGCGGACGGGCGGGCGGGCACTA-AGCCGACC
*
29038 -GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATTTTCATA
130 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * * *
29102 ATTCTGCATGCCAATGCCATTTTTATGGCTTGT-AAATTCATACAATGGTCCCTTAAGCCTTCAT
195 TTTCTACGTGCCAATGCCATTTTTATGGCTT-TAAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * * *
29166 GTGAAGTTTCATGGCAAGAAGAC-ACGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTT
259 GTGAAGTTTCATGGCAAGACGACTA-GTTTTCTATTTGTCACGA-TTTTCAAAATTTTTACGGTT
* * * ** * *
29230 CGGGATTTTTTAAAATTTTTTCGAAAGAAGTTTTGCCCCCAAACTTGGTAGATGTGATCCTTGTA
322 TGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTATA
*
29295 TTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
387 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
29360 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
452 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* *
29425 TGCTCTTTAAGGGGGTGTGAGTTC-CCAAGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAA
517 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAA
* * *
29489 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCTATCGTCGGAACCCTAAT
582 GTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAAT
* * *
29554 GCCGCCAGTCAGGTTCTCCGGTGATGCTCTGGTGATGGAGCCTCAACGAAGAAAAATGCGTCACC
647 GCCGTC-GTCAGGTTCTCCGGCGATGCTCTGATGATGGAGCCTCAACGAAGAAAAATGCGTCACC
29619 AGCACATGCCCGAGCCAAAAATCTACTGCCGCAACCCTCGGTCTTGTCCGATCTTAGACTGGGAA
711 AGCACATGCCCGAGCCAAAAATCTACTGCCGCAACCCTCGGTCTTGTCCGATCTTAGACTGGGAA
29684 CGAACTTCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
776 CGAACTTCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
29749 GCGGGCGCTCAGCCGGCCAGAGGGACGGGATGCGCAAGCCGGGGATCGGTCGGGTC
841 GCGGGCGCTCAGCCGGCCAGAGGGACGGGATGCGCAAGCCGGGGATCGGTCGGGTC
29805 CCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAAT
1 CCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAAT
*
29870 GAAATCAGTATGCCTATGCCAACCGACAAAATGAGCGGACGGGCGGGCGGGCACTAAGCCGACCA
66 GAAATCAGTATGCCTAAGCCAACCGACAAAATGAGCGGACGGGCGGGCGGGCACTAAGCCGACCA
* *
29935 GAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATAT
131 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
30000 TTCTACGTGCCAATGCCATTTTTATGGCTTTAAAATTCATACAATGGTCCCTTAAGCCTTCACGT
196 TTCTACGTGCCAATGCCATTTTTATGGCTTTAAAATTCATACAATGGTCCCTTAAGCCTTCACGT
*
30065 GAAGTTTCATGGCAAGACGACTAGTTTTCTATTTGTCATGATTTTCAAAATTTGTTACGGTTTGG
261 GAAGTTTCATGGCAAGACGACTAGTTTTCTATTTGTCACGATTTTCAAAATTT-TTACGGTTTGG
* * *
30130 GATTTTTTAAAATTTTTTCGGAATGAGTTTTGGTGCCAAACTTGGTAAACGTGATCCTTATATTT
325 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTATATTT
* *
30195 TTGTTGGCAGGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGA
390 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * * * *
30260 AAAAACTATCCCCATTTCAGACACTTTAATTGCTACTGGAAGCAAACCTGTAAAATCTCAAAGGC
455 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
30325 TCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
520 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTA
* * * * *
30390 CCAGCACCCATCACACATCATGTGCGCACACCCCCTGACCCTCCGATCATCGGAACCCTAATGCC
585 CCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCC
* * * * *
30455 GTCGATCAGGTTCT-C--CGA----C-GATGGT-G-GCC-CGACGAAGAGAAATGTGGCACCAGC
650 GTCG-TCAGGTTCTCCGGCGATGCTCTGATGATGGAGCCTCAACGAAGAAAAATGCGTCACCAGC
* ** * *
30509 ACATGCCCGAGCCTAGCATGTACTGCGGCAACCCTCGGTC---T--GA---T---C------CG-
714 ACATGCCCGAGCCAAAAATCTACTGCCGCAACCCTCGGTCTTGTCCGATCTTAGACTGGGAACGA
*
30556 -------AT-CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
779 ACTTCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* ** *
30613 GGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGG-CCGGTC
844 GGCGCTCAGCCGGCCAGAGGGACGGGATGCGCAAGCCGGGGATCGGTCGGGTC
*** ** * * * ** * ** * *
30665 CAATTC-G-GT-CT-TAGAT--TAG-GA--ATGAA--CTCCAT-ATGCCT-A-AGT-GAAT-CG-
1 CCCCTCTGCGTGCTGCCGATCCT-GCTACCA-CAACCCTCGATCCGGTCTGATCTTAGACTGGGA
* ** *** * * ** * * * * ** *
30713 ATGAAA-CGAGCGA-G-C-GGGCGGGCGGGCACTACG-CCGGCCAGAAAGACGGG-ATGCGC-AA
64 ATGAAATC-AG-TATGCCTAAGCCAACCGACAAAATGAGCGGAC-G---GGCGGGCGGGCACTAA
* ** ** ** * * * * ** ** *** * *
30771 GTCG--TGGATCGATAGGATG-G-TAG--GTGGGT--TTAGGCACATCTTCATATTTCTGTATGC
123 GCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG---GTGGT-AGGTGGGTTTAGGC
* * * * ** * ** * * * ** **** *
30828 -CAATGC--CATTTTTATGGCTTGTAAAT-TCATACAATAAT-CCCTTAAGCCTTCACGTGATGT
184 AC-AT-CTTCATATTTCT-ACGTGCCAATGCCAT--TTTTATGGCTTTAA-AATTCATACAATGG
* * * * ** * ***** * * ** ** *
30888 TTCATGGCAAGACGACTCGT----TTTCTAT-TTTTCATGA-T-TTTTTAAACTTT-TTGCG--G
243 TCCCT--TAAGCCTTCACGTGAAGTTTC-ATGGCAAGACGACTAGTTTTCTA-TTTGTCACGATT
* * *** * *** ** * *
30943 TTCGAGATTTTTTAAAATTT---TTTTGGAAGGAGTTTTTC--------------CCCCAAACTT
304 TTC-AAAATTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAACTT
30991 GGTAGACGTGATCCTTGTATATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
368 GGTAGACGTGATCC-T-TATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
31055 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
431 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
31120 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-AGGTTTGATGAGAGATA
496 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
31184 GGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCGCACACCCCCCGAGCC
561 GGGGACCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCG-GCC
* * * * *
31249 CCCCCATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTGGTGATGGAGCCT
625 CCCCGATCGTCGGAACCCCAATGCCGTC-GTCAGGTTCTCCGGCGATGCTCTGATGATGGAGCCT
31314 CAACGAAGAAAAATGCGTCACCAGCACATGCCCGAGCCAAAAATCTACTGCCGCAACCCTCGGTC
689 CAACGAAGAAAAATGCGTCACCAGCACATGCCCGAGCCAAAAATCTACTGCCGCAACCCTCGGTC
31379 TTGTCCGATCTTAGACTGGGAACGAACTTCATATGCTTAGACTGGGAATGAACTCCGTATGCCTA
754 TTGTCCGATCTTAGACTGGGAACGAACTTCATATGCTTAGACTGGGAATGAACTCCGTATGCCTA
*
31444 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGACGGGATGCGCAAGCCGAG
819 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGACGGGATGCGCAAGCCGGG
31509 GATCGGTCGGGTC
884 GATCGGTCGGGTC
31522 CCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAAT
1 CCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAAT
*
31587 GAAATCAGTATGCCTATGCCAACCGACAAAATGAGCGGACGGGCGGGCGGGCACTAAGCCGACCA
66 GAAATCAGTATGCCTAAGCCAACCGACAAAATGAGCGGACGGGCGGGCGGGCACTAAGCCGACCA
31652 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
131 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
31717 TTCTACGTGCCAATGCCATTTTTATGGCTTTAAAATTCATACAATGGTCCCTTAAGCCTTCACGT
196 TTCTACGTGCCAATGCCATTTTTATGGCTTTAAAATTCATACAATGGTCCCTTAAGCCTTCACGT
*
31782 GAAGTTTCATGGCAAGACGACTAGTTTTCTATTTGTCACGATTTTCAAAACTTGTTACGGTTTGG
261 GAAGTTTCATGGCAAGACGACTAGTTTTCTATTTGTCACGATTTTCAAAA-TTTTTACGGTTTGG
* * *
31847 GATTTTTTAAAATTTTTTCGGAATGAGTTTTGGTGCCAAACTTGGTAAACGTGATCCTTATATTT
325 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTATATTT
* *
31912 TTGTTGGCAGGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGA
390 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * * *
31977 AAAAACTATCCCCATTTCAAACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGC
455 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
32042 TCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
520 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTA
* * *
32107 CCAGCACCCATCACACATCATGTGCGCACACCCCCTGACCCCCCCGATCATCGGAACCCCAATGC
585 CCAGCACCCATCACACATCATGTGCGCACACCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGC
*
32172 CGTCGATCAGGTTCTCCGACGATG
649 CGTCG-TCAGGTTCTCCGGCGATG
32196 GTGCCCCGGC
Statistics
Matches: 2708, Mismatches: 425, Indels: 301
0.79 0.12 0.09
Matches are distributed among these distances:
818 93 0.03
819 177 0.07
820 11 0.00
822 3 0.00
826 1 0.00
827 4 0.00
828 1 0.00
829 3 0.00
830 56 0.02
832 11 0.00
833 1 0.00
835 11 0.00
836 9 0.00
837 7 0.00
838 10 0.00
839 20 0.01
840 23 0.01
841 16 0.01
842 13 0.00
843 17 0.01
844 7 0.00
845 12 0.00
846 7 0.00
847 5 0.00
848 1 0.00
849 1 0.00
850 3 0.00
851 5 0.00
852 1 0.00
853 2 0.00
854 2 0.00
855 3 0.00
856 99 0.04
857 10 0.00
858 3 0.00
859 3 0.00
860 10 0.00
861 100 0.04
862 3 0.00
863 2 0.00
864 2 0.00
865 1 0.00
866 5 0.00
867 3 0.00
868 1 0.00
869 1 0.00
870 5 0.00
871 7 0.00
872 12 0.00
873 7 0.00
874 17 0.01
875 13 0.00
876 16 0.01
877 24 0.01
878 20 0.01
879 10 0.00
880 8 0.00
881 6 0.00
882 13 0.00
884 1 0.00
885 11 0.00
887 56 0.02
888 3 0.00
889 1 0.00
890 4 0.00
891 1 0.00
892 79 0.03
893 1 0.00
895 59 0.02
896 388 0.14
897 445 0.16
898 580 0.21
899 142 0.05
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (896 bp):
CCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAAT
GAAATCAGTATGCCTAAGCCAACCGACAAAATGAGCGGACGGGCGGGCGGGCACTAAGCCGACCA
GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TTCTACGTGCCAATGCCATTTTTATGGCTTTAAAATTCATACAATGGTCCCTTAAGCCTTCACGT
GAAGTTTCATGGCAAGACGACTAGTTTTCTATTTGTCACGATTTTCAAAATTTTTACGGTTTGGG
ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTATATTTT
TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTAC
CAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCG
TCGTCAGGTTCTCCGGCGATGCTCTGATGATGGAGCCTCAACGAAGAAAAATGCGTCACCAGCAC
ATGCCCGAGCCAAAAATCTACTGCCGCAACCCTCGGTCTTGTCCGATCTTAGACTGGGAACGAAC
TTCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
CGCTCAGCCGGCCAGAGGGACGGGATGCGCAAGCCGGGGATCGGTCGGGTC
Found at i:31439 original size:26 final size:26
Alignment explanation
Indices: 31388--31440 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31378 CTTGTCCGAT
*
31388 CTTAGACTGGGAACGAACTTCATATG
1 CTTAGACTGGGAACGAACTCCATATG
* *
31414 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCATATG
31440 C
1 C
31441 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:33137 original size:26 final size:26
Alignment explanation
Indices: 33108--33160 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
33098 CCAGGCTGAT
33108 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33134 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33160 C
1 C
33161 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34071 original size:26 final size:26
Alignment explanation
Indices: 33993--34063 Score: 133
Period size: 26 Copynumber: 2.7 Consensus size: 26
33983 CTTGTCCGAT
33993 CTTAGACTGGGAACGAACTTCATATG
1 CTTAGACTGGGAACGAACTTCATATG
34019 CTTAGACTGGGAACGAACTTCATATG
1 CTTAGACTGGGAACGAACTTCATATG
*
34045 CTTAGACTGGGAATGAACT
1 CTTAGACTGGGAACGAACT
34064 CCGTATGCCT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTTCATATG
Found at i:34491 original size:912 final size:906
Alignment explanation
Indices: 32391--34932 Score: 3682
Period size: 912 Copynumber: 2.8 Consensus size: 906
32381 TCCATTTCGG
* * ** ** *
32391 TCTTAGACTAGGAATGAACTCCA-TATGCCTAAGTGAACCGATGAAACGAGCGAGCAGGCGGGCG
1 TCTTAGACTGGGAATGAAAT-CAGTATGCCTAAGCCAACCGACAAAACGAGCG-GCGGGCGGGCG
* * * * * *
32455 GGCACTATGTCGGCCAGAAAGACGGGATACGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTT
64 GGCACTAAGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
** **
32520 AGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGT-AAATTCATACAATAAT
129 AGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT-TAAAATTCATACAATGGT
* * * *
32584 CCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTTA
193 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTGTCATGA-TTTTCA
* * * * * * ****
32649 AACTTT-TTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTTCCCCCAAACTTGGTA
257 AAATTTGTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAATGAGTTTTGGTGCCAAACTTGGTA
* * *
32713 GACGTGATCCTTGTATATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
322 AACGTGATCC-T-TATATTTTTGTTGGCAGGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTAC
* *
32777 AAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAAACACTTTAATGGCTACTGGCAA-CA
385 AAGATTTTGTGACCATTTGAAAAAACTATCCCCATTTCAGACACTTTAATGGCTACTGG-AAGCA
* *
32841 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGG
449 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGATAGGG
* * *
32906 GGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC-CCAATGTGCGCACACCCCCCCGGCCCC
514 GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC-ATGTGCGCACA--CCCCCTGACCC
** *
32970 CCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACAATGGTGCCCC
576 CCCGATCATCGGAACCCCAATGCCGTCGATCAGGTTCT-C--CGA-----CG---ATGGTGCCCC
* *
33035 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAGCCTCG-C-T
630 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGCCGCAACCCTCGTCGT
* * *
33098 C---C----A----G--G--C-T-GAT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
695 CGATCTTAGACTGGGAAGAACTTCTATGCTTAGACTGGGAACGAACTCCATATGCTTAGACTGGG
* * * * *
33145 AATGAACTCCGTATGCCTAAGTCAACCTAGGAAACTAGCGTGCAGGCGCTCAGTCGGCCAGAGGG
760 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCAGAGGG
* * * * *
33210 GCGGGATGCGCAGGCCGGGGATCGGTCGGGTCCCTCTCTACGTGCTGCCGATCCTACTACCGCAA
825 ACGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCAATCCTACTACCACAA
*
33275 CCCTCACTTCGATCTAA
890 CCCTCACTCCGATCTAA
* ** * * *
33292 TCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAATCGACGAAACGAGCGGGGGGCGGGCGGG
1 TCTTAGACTGGGAATGAAATCAGTATGCCTAAGCCAACCGACAAAACGAGCGGCGGGCGGGCGGG
33357 CACTACA-CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
66 CACTA-AGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * *
33421 GGCACATTTTCATAATTCTGCGTGCCAATGCCATTTTTATGGTTTTAAAATTCATACAATGGTCC
130 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTTAAAATTCATACAATGGTCC
*
33486 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTGTCACGATTTTCAAAA
195 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTGTCATGATTTTCAAAA
*
33551 CTTGTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAATGAGTTTTGGTGCCAAACTTGGTAAAC
260 TTTGTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAATGAGTTTTGGTGCCAAACTTGGTAAAC
33616 GTGATCCTTATATTTTTGTTGGCAGGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGAT
325 GTGATCCTTATATTTTTGTTGGCAGGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGAT
33681 TTTGTGACCATTTGAAAAAACTATCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTG
390 TTTGTGACCATTTGAAAAAACTATCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTG
33746 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGATAGGGGGCCAA
33811 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTGACCCCCCGATCAT
520 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTGACCCCCCGATCAT
* *
33876 CGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGTCAC
585 CGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCAC
* ** * * *
33941 CAGCACATGCTCGAGCCAAAAATCTACTGCCACAACCCTCGTCTTGTCCGATCTTAGACTGGGAA
650 CAGCACATGCCCGAGCCAAGCATGTGCTGCCGCAACCCTCGTC--GT-CGATCTTAGACTGGGAA
*
34006 CGAACTTCATATGCTTAGACTGGGAACGAACTTCATATGCTTAGACTGGGAATGAACTCCGTATG
712 -GAACTTC-TATGCTTAGACTGGGAACGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATG
* *
34071 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGACCAGAGGGACGGGATGCGCAAGC
775 CCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCAGAGGGACGGGATGCGCAAGC
* * *
34136 CGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCACAACCCTCGA-TCCGGTC
840 CGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCAATCCTACTACCACAACCCTC-ACTCCGATC
*
34200 TGA
904 TAA
* *
34203 TCTTAGACTGGGAATGAAATCAGTATGCCTATGCCAACCGACAAAATGAGCGGACGGGCGGGCGG
1 TCTTAGACTGGGAATGAAATCAGTATGCCTAAGCCAACCGACAAAACGAGCGG-CGGGCGGGCGG
*
34268 GCACTAAGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
65 GCACTAAGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
34333 GGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTTAAAATTCATACAATGGTCC
130 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTTAAAATTCATACAATGGTCC
34398 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTGTCATGATTTTCAAAA
195 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTGTCATGATTTTCAAAA
34463 TTTGTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAATGAGTTTTGGTGCCAAACTTGGTAAAC
260 TTTGTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAATGAGTTTTGGTGCCAAACTTGGTAAAC
34528 GTGATCCTTATATTTTTGTTGGCAGGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGAT
325 GTGATCCTTATATTTTTGTTGGCAGGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGAT
*
34593 TTTGTGACCATTTGAAAAAACTATCCCCATTTCAGACACTTTAATTGCTACTGGAAGCAAACCTG
390 TTTGTGACCATTTGAAAAAACTATCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTG
*
34658 TAAAATCTCAAAGGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGATAGGGGGCCAA
*
34723 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTGACCCTCCGATCAT
520 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTGACCCCCCGATCAT
* * * *
34788 CGGAACCCTAATGCCGTCGATCAGGTTCTCCGGCGATGGTGGCCCGACGAAGAGAAATGCGGCAC
585 CGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCAC
* *
34853 CAGCACATGCCCGAGCCTAGCATGTGCTGCGGCAACCCTCGGTCCGATTCGATCTTAGACTGGGA
650 CAGCACATGCCCGAGCCAAGCATGTGCTGCCGCAACCCTC-GT-CG--TCGATCTTAGACTGGGA
34918 ATGAACTTCGTATGC
711 A-GAACTTC-TATGC
34933 CTAAGTCAAC
Statistics
Matches: 1487, Mismatches: 115, Indels: 66
0.89 0.07 0.04
Matches are distributed among these distances:
886 61 0.04
887 1 0.00
889 2 0.00
890 1 0.00
891 1 0.00
894 4 0.00
896 1 0.00
897 44 0.03
898 12 0.01
899 221 0.15
900 236 0.16
901 44 0.03
902 1 0.00
905 1 0.00
907 1 0.00
908 1 0.00
910 2 0.00
911 209 0.14
912 611 0.41
913 31 0.02
914 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (906 bp):
TCTTAGACTGGGAATGAAATCAGTATGCCTAAGCCAACCGACAAAACGAGCGGCGGGCGGGCGGG
CACTAAGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTTAAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTGTCATGATTTTCAAAAT
TTGTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAATGAGTTTTGGTGCCAAACTTGGTAAACG
TGATCCTTATATTTTTGTTGGCAGGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAACTATCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTGACCCCCCGATCATC
GGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC
AGCACATGCCCGAGCCAAGCATGTGCTGCCGCAACCCTCGTCGTCGATCTTAGACTGGGAAGAAC
TTCTATGCTTAGACTGGGAACGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
TCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCAGAGGGACGGGATGCGCAAGCCGGGGA
TCGGTCGGGTCCCCCTCTACGTGCTGCCAATCCTACTACCACAACCCTCACTCCGATCTAA
Found at i:35771 original size:26 final size:26
Alignment explanation
Indices: 35735--35787 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35725 CTAGTCTGAT
35735 CTTAGACTGGGAACGAACTTCGTATG
1 CTTAGACTGGGAACGAACTTCGTATG
* *
35761 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAACGAACTTCGTATG
35787 C
1 C
35788 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTTCGTATG
Found at i:37491 original size:26 final size:26
Alignment explanation
Indices: 37455--37507 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
37445 CTAGTCTGAT
37455 CTTAGACTGGGAACGAACTTCGTATG
1 CTTAGACTGGGAACGAACTTCGTATG
* *
37481 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAACGAACTTCGTATG
37507 C
1 C
37508 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTTCGTATG
Found at i:42256 original size:11 final size:11
Alignment explanation
Indices: 42237--42269 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
42227 CGGTCAGGTT
*
42237 CTCCGGCGATG
1 CTCCAGCGATG
42248 CTCCAGCGATG
1 CTCCAGCGATG
42259 CTCCAGCGATG
1 CTCCAGCGATG
42270 GTGCCCCGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.15, C:0.36, G:0.30, T:0.18
Consensus pattern (11 bp):
CTCCAGCGATG
Found at i:42688 original size:728 final size:712
Alignment explanation
Indices: 40894--43092 Score: 3076
Period size: 710 Copynumber: 3.1 Consensus size: 712
40884 CTGCTGATCT
* * * * *
40894 TGCTGCCGCAACCATCAGTTTGGTTTAATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAA
1 TGCTGACGCAACC-TCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * **
40959 CTGGCGAAAC--A-A-GCGGGCGGGTACTACG-CAGGCCAGAGAGACGGGATGCCCAAGCCGTGG
65 CCGATGAAACGAACAGGCGGGCGGGCACTACGCCA-GCCAGAGAGACGGGATGTGCAAGCCGTGG
*
41019 ATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
129 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * * * * *
41084 GGCTTGTAAATTCATGCAATGGTCCCTCAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGT
194 GGCTTGTAAATTCATACAATTGTCCTTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * *
41149 CTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAATTTTTTTTGGAAGG
259 TTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTTGAAAGG
*
41214 ATTTTTGGCCCGAAACTTGGTAGACCTGATCCTTGTATTTTT-TTTGGCATGCACAAAAAAATTC
324 ATTTTTGGCCCCAAACTTGGTAGACC-GATCCTTGTATTTTTGTTT-GCATGCACAAAAAAATTC
* *
41278 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCAATTTCAGACAC
387 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
41343 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTG
452 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTCG
*
41408 AGGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
517 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* *
41473 TGCACACCCCTCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGAT
582 CGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGAT
* * * **
41538 GCT-C--TG-ACGATGGTGCACCGGCAAAGAAAATTGCGGCACCAGCACATGCTTGAGCCCAA-C
646 GCTCCGATGTACGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAG-CCAAGC
41598 ATG
710 ATG
* * * *
41601 TGCT-ACGTAGCCCTC-GTTTCGGTCTTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGACGCA-ACCTCAGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
41664 ACCGATGAAACGAACAGGCAGGCGGGCACTATGCC-GACCAGAGAGACGGGATGTGCAAGCCATG
64 ACCGATGAAACGAACAGGCGGGCGGGCACTACGCCAG-CCAGAGAGACGGGATGTGCAAGCCGTG
* * ** *
41728 GATCGATATGGTCGTAGGTGGGTTTAGGTGCATCTTCATATTTCTGCATGCCAATGCCATTTTTG
128 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* * * *
41793 TGGCTTGTAAATTCATACAATTGTCTTTTAA-AACTTCATGTGAAGTTTCATGGCAAGGCGACTC
193 TGGCTTGTAAATTCATACAATTGTCCTTTAAGCA-TTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * *
41857 ATTTTCTATTTTTCGCGATGTTTGAAACTTTTTCTGGTTCGAGATTTTTTAAAATTTTTTTGAAA
257 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTTGAAA
* *
41922 GGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTTGCATGCATAAAAAAATT
322 GGATTTTTGGCCCCAAACTTGGTAGAC-CGATCCTTGTATTTTTGTTTGCATGCACAAAAAAATT
41987 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
386 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
42052 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTC
451 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTC
* * * *
42117 GAGGTTTGATGAAGGATAGGTGGCCAAGATAAGGGCCAAGTACCAGCACCCATTGCACATCATGT
516 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* *
42182 GCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGAT
581 GCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGAT
*
42247 GCTCCAGCGATGCTCCAGCGATGGTGCCCCGACAAAGAAAAATACGGCACCAGCACATGCCCGAG
646 GCT-C--CGATG-T--A-CGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAG
42312 CCAAGCATG
704 CCAAGCATG
* **
42321 TGCTGCCGCAACCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAAC
1 TGCTGACGCAACCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
42386 CGATTAGACGAGCGGGCGGACGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGTGCAAG
66 CGA-T-GA--A----ACGAACAGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGTGCAAG
* *
42451 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCGAATGCCAT
123 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
42516 TTTTATGGCTTGTAAATTCATACAATTGTCCTTTAAGCATTCACGAGAAGTTTCATGGCAAGACG
188 TTTTATGGCTTGTAAATTCATACAATTGTCCTTTAAGCATTCACGTGAAGTTTCATGGCAAGACG
* * * *
42581 ACTTGTTTTCTACTTTTCAC-ATTTTTTTAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTT
253 ACTCGTTTTCTATTTTTCACGA-TTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTT
** *
42645 CAAAAGGATTTTTTGCCCCAAACTTGGTAGACGCGATCCTTGTATTTTTG-TTGCATGCACAAAA
317 TGAAAGGATTTTTGGCCCCAAACTTGGTAGAC-CGATCCTTGTATTTTTGTTTGCATGCACAAAA
* * *
42709 AAATTCAGCTGAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCCATTTC
381 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
42774 AGACACTTTAATGGCTACTGGGAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAG
446 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAG
* * * *
42839 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCTAAGTAGCAGCACCCATCGCACAT
511 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
42904 CATGTGCGCACACCACCCCCAGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCTGGTTCTCC
576 CATGTGCGCACACC-CCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* *
42969 GGTGATGCTCCGA--T--GATGGTGCCCCGA-GAAGAAAAATGTGGCACCAGCACATGCCCGAGC
640 GGTGATGCTCCGATGTACGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGC
*
43029 CCAGCATG
705 CAAGCATG
* * *
43037 TGCTGTCGCAACCCTCGATTC-AGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 TGCTGACGCAA-CCTC-AGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
43093 TTGACAGGGA
Statistics
Matches: 1326, Mismatches: 127, Indels: 68
0.87 0.08 0.04
Matches are distributed among these distances:
705 4 0.00
706 53 0.04
707 6 0.00
708 1 0.00
709 52 0.04
710 461 0.35
711 4 0.00
713 1 0.00
715 2 0.00
716 47 0.04
717 49 0.04
718 3 0.00
719 5 0.00
720 98 0.07
721 7 0.01
722 3 0.00
724 1 0.00
725 3 0.00
727 212 0.16
728 312 0.24
729 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.28
Consensus pattern (712 bp):
TGCTGACGCAACCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGATGAAACGAACAGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGTGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATTGTCCTTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAT
TTTTGGCCCCAAACTTGGTAGACCGATCCTTGTATTTTTGTTTGCATGCACAAAAAAATTCAGCT
AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCC
GATGTACGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCAAGCATG
Found at i:44486 original size:877 final size:881
Alignment explanation
Indices: 42321--44735 Score: 3233
Period size: 898 Copynumber: 2.7 Consensus size: 881
42311 GCCAAGCATG
* * **
42321 TGCTGCCGCAACCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAAC
1 TGCTGCCGCAACCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* ** * * * * * *
42386 CGATTAGACGAGCGGGCGGACGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGTGCAAG
66 TGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* * *
42451 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCGAATGCCAT
131 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * * * *
42516 TTTTATGGCTTGTAAATTCATACAATTGTCCTTTAAGCATTCACGAGAAGTTTCATGGCAAGACG
196 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATG
* * *
42581 ACTTGTTTTCTACTTTTCAC-ATTTTTTTAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTT
261 ACTTGTTTTCTATTTTTCACGA-TTTTTAAAACTTTTTGCGGTTCGGGATTTTTT-AAATTTTTT
*** * * *
42645 CAAAAGGATTTTTTGCCCCAAACTTGGTAGACGCGATCCTTGTATTTTTGTTGCATGCACAAAAA
324 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGCATGCACAAAAA
* * *
42710 AATTCAGCTGAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCCATTTCA
389 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
42775 GACACTTTAATGGCTACTGGGAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGT
454 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT-AAGGGGGTGTGAGT
* * * *
42840 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCTAAGTAGCAGCACCCATCGCACATC
518 TTTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
42905 ATGTGCGCACACCACCCCCAGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCTGGTTCTCCG
583 ATGTGCGCACACC-CCCCGA-CCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCG
* * * * *
42970 GTGATGCTCCGATGATGGTGCCCCGAGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
646 GCGATGCTCAGATGATGGTGACCAGAGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCA
* * *
43035 TGTGCTGTCGCAACCCTCGATTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTGACAG
711 TGTGCTGCCGCAACCCACGATCCAGTCTGATCTTAGACT--GAATGAACTCCG-A----T-AC--
* * * *
43100 GGAATGAACTCTGTTTGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCTGGCCAGAG
766 ---AT--ACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGATCAGCCGGCCAGAG
* * * *
43165 GGGCGGGATGCGCAAGCCGGGGATCGGACTGGTCCCCCTCTATGTGGCACTGATCC
826 GGGCGGAATGCGCAAGCCAGGGATCGGACTGGTCCCACTCTACGTGGCACTGATCC
* * *
43221 TGCTGCTGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGTACTCCTTATGCCTAAGCCAA
1 TGCTGCCGCAA-CCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
43286 -TCGACGAAACGAGCGGGC-GG-A--CGGGCAGCCACTACGTCGGCCAGAGAGACGGGAAGCGCA
65 CT-GACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * * *
43346 AGTCATGGATCGATAGGGTGGTATGTGGGTTATAGGCACATCTTCATATATCTGCATGTCAATGC
129 AGCCATGGATCGATAGGGTGGTAGGTGGGTT-TAGGCACATCTTCATATTTCTGCATGCCAATGC
*
43411 GATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
193 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
43476 ATGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATCCTTTAAAATTTT
258 ATGACTTGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGAT-TTTTTAAATTTT
* * * *
43541 CTTGGCAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCCCAA
322 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT-GCATGCACAA
43606 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
386 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
43671 TCAGACACTTTAATGGCTACT-GCAGCAAACCTGTAACATCTCAAATGCTCATTAAGGGGGTGTG
451 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTAAGGGGGTGTG
** *
43735 AGTTTTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCAC
515 AGTTTTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
43800 ATCATGTGCGCACACCCCCTCGACCCACCCGATCGTCGAAACCCCAATGCCGCCGATCAGGTTCT
580 ATCATGTGCGCACACCCCC-CGACCC-CCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCT
43865 CCGGCGATGCTCTAG-TGATGGTGACCAGATGAAGAAAAATATGGCACCAGCACATGCCCGAGCC
643 CCGGCGATGCTC-AGATGATGGTGACCAGA-GAAGAAAAATATGGCACCAGCACATGCCCGAGCC
*
43929 CAGCATGTGCTGCCGTAACCCACTG-TCCTA-TCTGATCTTAGACT-AA-GAA-T-C-A-AC-T-
706 CAGCATGTGCTGCCGCAACCCAC-GATCC-AGTCTGATCTTAGACTGAATGAACTCCGATACATA
** * *
43984 C-C-GTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGATCAGCCGGCTAGAGGGGTGGAA
769 CTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGATCAGCCGGCCAGAGGGGCGGAA
* * * * *
44047 TGCGTAAGTCAGGGATCGGTC-GAGTCCCACTCTGCGTGCTGC-C-GATCT
834 TGCGCAAGCCAGGGATCGGACTG-GTCCCACTCTACGTG--GCACTGATCC
*
44095 TGCTACCGCAACCATCAGT-TCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCGCAACC-TCAGTCT-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
44159 ACTGACGAAACAAGCGGGCGGGCAGGCGGGCGGGTACTACGTCGGCCAGAGAGACGGGATGC-CG
64 ACTGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC-
44223 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
128 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
44288 CATTTTTATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
193 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
44353 ATGACTCGTCTTCCATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAATTTTT
258 ATGACTTGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAATTTTT
* * *
44418 TTGGGAAGGAGCTTTGGCCCAAAACTTGGTAGACGTGATCCTTGAATTTTTGTTCGCATGCACAA
323 TT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT-GCATGCACAA
* *
44483 AAAAATTCAGCTACAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATT
386 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
44548 TCAGACAGTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTG
451 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTAAGGGGGTGTG
* * * * * *
44613 AGTTTTCCAGGTTTGATGAGGGATAAGGGGCGAATATAAGGGCCAAGTACTAGCACCTATCACAC
515 AGTTTTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
44678 ATCATGTGCACACACACCCCCTGACCCCCCCGATCGTCGGAACCCCAATGCCGTCCGA
580 ATCATGTGCGCACAC-CCCCC-GA-CCCCCCGATCGTCGGAACCCCAATGCCG-CCGA
44736 CAATGGTGCC
Statistics
Matches: 1348, Mismatches: 137, Indels: 80
0.86 0.09 0.05
Matches are distributed among these distances:
873 4 0.00
874 156 0.12
875 5 0.00
876 16 0.01
877 279 0.21
878 174 0.13
879 31 0.02
880 7 0.01
885 2 0.00
891 1 0.00
893 1 0.00
894 1 0.00
895 3 0.00
896 2 0.00
897 67 0.05
898 358 0.27
899 168 0.12
900 13 0.01
901 60 0.04
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (881 bp):
TGCTGCCGCAACCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
TGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATG
ACTTGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAATTTTTTTG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTAAGGGGGTGTGAGTTTT
CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCGAT
GCTCAGATGATGGTGACCAGAGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCACGATCCAGTCTGATCTTAGACTGAATGAACTCCGATACATACTCTGTATGCCT
AAGTCAACCCACGAAACAAGCGTGCAGGCGATCAGCCGGCCAGAGGGGCGGAATGCGCAAGCCAG
GGATCGGACTGGTCCCACTCTACGTGGCACTGATCC
Found at i:45705 original size:683 final size:683
Alignment explanation
Indices: 44201--46089 Score: 2958
Period size: 683 Copynumber: 2.8 Consensus size: 683
44191 GGTACTACGT
* *
44201 CGGCCAGAGAGACGGGATGC-CGAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
1 CGGCCAGAGGGTCGGGATGCGC-AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
44265 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTGAATTCATACAATGGTCCCTTAAGCC
65 TTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * *
44330 TTCACGTGAAGTTTCATGGCAAGATGACTCGTCTTCCATTTTTCACGATTTTCAAAACTTTTTGC
130 TTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTAC
* *
44395 GGTTCGGGATTTTTT-AAATTTTTTTGGGAAGGAGCTTTGGCCCAAAACTTGGTAGACGTGATCC
195 GGTTCGGGATTTTTTAAAATTTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * *
44459 TTGAATTTTTGTTCGCATGCACAAAAAAATTCAGCTACAAACTCGAAGTGTACAAGATTTTGTGA
259 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
44524 CCATTTGAAAAAAATGTCCCCATTTCAGACAGTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
324 CCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * * *
44589 TCAAATGCTCTTTAAGAGGGTGTGAGTTTTCCAGGTTTGATGAGGGATAAGGGGCGAATATAAGG
389 TCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * * * *
44654 GCCAAGTACTAGCACCTATCACACATCATGTGCACACACACCCCCTGACCCCCCCGATCGTCGGA
454 GCCAAGTACCAGCACCCATCACACATCATGTGCGCACAC-CCCCC-GGCCCCCCCGATCGCCGAA
* * * *
44719 ACCCCAATGCCGTCCGACAATGGTGCCCCGACGAAGAAAAATGCGGCACCATCACATGCTCAAGC
517 ACCCCAATACCGTCCGACAATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGC
* * *
44784 CCAGCATGTGCTGTCGCAACCCTCAATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCC
582 CCAGCATGTGCTGCCACAACCCTCAATCCGATATGATCTTAGACTGGGAATGAACTCCGTATGCC
*
44849 TAATTCAAGCCACGAAACGAGCGTGCGGGCGCTCAGC
647 TAATTCAAGCCACGAAACGACCGTGCGGGCGCTCAGC
* * *
44886 CGGCCAGAGGGTCGGGATGCGCAAGTCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
1 CGGCCAGAGGGTCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
44951 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT-AGTACAATGGTCCTTTAAGCC
66 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA-TACAATGGTCCCTTAAGCC
* * **
45015 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTAC
130 TTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTAC
* * *
45080 GGTTCGGGATTTTTTAAAATTTTTTTGGAAGGCGTTTTAGCCCCAAACTTGGTAGACATGATCCT
195 GGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
*
45145 TGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
260 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * *
45210 CATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAGTCT
325 CATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * * *
45275 CAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGGGCCAGTATAAGGG
390 CAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
** *
45340 CCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCTCGGCCCCCCCGATCGCCGAAACC
455 CCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACC
* * * ** *
45405 CCAATACCGTTCGACGATGGTGCCTCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
520 CCAATACCGTCCGACAATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCA
** *
45470 GCATGTGCTGCCACAACCCTCGGTCTGATATGATCTTAGA-TAGGGAATGAACTCCGTATGCCTA
585 GCATGTGCTGCCACAACCCTCAATCCGATATGATCTTAGACT-GGGAATGAACTCCGTATGCCTA
*
45534 ATTCATGCCACGAAACGACCGTGCGGGCGCTCAGC
649 ATTCAAGCCACGAAACGACCGTGCGGGCGCTCAGC
45569 CGGCCAGAGGGTCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
1 CGGCCAGAGGGTCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
45634 TCATATTTCTACGTGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
66 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
*
45699 TCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCAAAAGTTTTTACG
131 TCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACG
* * * * *
45764 GTTCAGGATTTTTTAATATTTTTTTGGACGGATTTTTGGCCCCAAACTTGGTAGCCGTGATCCTT
196 GTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
45829 GTATTTTTGTTGGCATGCACAAAATAATTCAGCTTAAAACTCGAAGTGTACAAGATTTTGTGACC
261 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
*
45894 ATTTCAAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
326 ATTT-GAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
45959 CAAATGCTCTTTAAGCGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
390 CAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * *
46024 CCAAGTACCAGTACCCATCACACATCATGTGCGCACACCCCCCCGGCCCTCCCGATCACCGAAAC
455 CCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGAAAC
46089 C
519 C
46090 GTAATGCCGC
Statistics
Matches: 1097, Mismatches: 100, Indels: 14
0.91 0.08 0.01
Matches are distributed among these distances:
682 1 0.00
683 469 0.43
684 156 0.14
685 460 0.42
686 11 0.01
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (683 bp):
CGGCCAGAGGGTCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACG
GTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCC
CAATACCGTCCGACAATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAG
CATGTGCTGCCACAACCCTCAATCCGATATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAT
TCAAGCCACGAAACGACCGTGCGGGCGCTCAGC
Found at i:50426 original size:26 final size:26
Alignment explanation
Indices: 50389--50441 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
50379 TCCGATCGAT
*
50389 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACAGGGAATGAACTACGTATG
* *
50415 CTTAGACAGGGAATGAAGTTCGTATG
1 CTTAGACAGGGAATGAACTACGTATG
50441 C
1 C
50442 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTACGTATG
Found at i:51104 original size:905 final size:897
Alignment explanation
Indices: 47970--51321 Score: 4630
Period size: 905 Copynumber: 3.7 Consensus size: 897
47960 GCTAGAGGGT
* * *
47970 CAGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
1 CAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
*
48035 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTT
66 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* *
48100 TCATGGCAAGACGACT-AGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAAGATTT
131 TCATGGCAAGACGACTCA-TTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAAGATTT
* *
48164 TTTAAAATTGTTTTGGAAGGCGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
195 TTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* * *
48229 GGCATGCATAAAAAAATTCAGCTAAGAAC-GCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
260 GGCATGCACAAAAAAAATCAGCTAAAAACTG-GAAGTGTACAAGATTTTGTGACCATTTGAAAAA
*
48293 TGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
324 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
48358 TAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
389 TAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * *
48423 CACCCATCACACATAATGTGTGCACA-------CCCCCCGATCGTCGGAACCCCAATGCCGCCGG
454 CACCCATCACACATCATGTGCGCACACCCCCGCCCCCCCGATCGTCGAAACCCTAATGCCGCCGG
* * **
48481 TCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGAC-AATGAAAAATGTGACACCAGCACAT
519 TCAAGTTCTCGA-CGATGCTCCGACGATGGTGCCCCGACGAA-GAAAAATACGACACCAGCACAT
* * *
48545 GGCCAAGCCCAGCTTGTGCTG-TAGCAACCCTCGGTCCAGTCCGATCATT-GACTGGGAATGAAC
582 -GCCCAGCCCAGCATGTGCTGCCA-CAACCCTCGGTCCAGTCCGATC-TTAGACTGGGAATGAAC
* * * * * *
48608 TCCATATGCTTAAACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACAAAACAAGCGTATGGG
644 TCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGTGGG
* * * *
48673 CGCTCAATCGGACAGAGGGGCGAGATACGCAAGCCGAGGATCAGTCGGGTCCCCCTCTGCATGCT
709 CGCTCAATCGGGCAGAGGGGCGGGATGCGCAAGCTGAGGATCAGTCGGGTCCCCCTCTGCATGCT
* * *
48738 GTCGATCTTGCTGCCGTAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCC
774 GCCGATCCTGCTGCCGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAAC-TCGTATGCC
* * * * *
48803 TAAGCCAACCGACTAAACGAGCGGGC---AGGA-GGGCGGGCACTACGTCGGCCAAAGA-A
838 TAAGCCAA-CGACGAAACGAGCGGGCGGGCGGACGGGTGGGCACTACGCCGGCCAGAGAGA
* *
48859 CGGGATGCGCAAGCCATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
1 CAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
* *
48924 GTGCCAATGCCATTTTTATGGCTTGTAAATTCTTACAATGGTCCCTTTAGCCTTCACGTGAAGTT
66 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * *
48989 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAGGATTTT
131 TCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAAGATTTT
* ** * *
49054 TTTAAATTTTTTCAGAAGGAGTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
196 TTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* * *
49119 GCTTGCACAAAACAAATCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
261 GCATGCACAAAAAAAATCAGCTAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
49184 AGTCACCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA-GCTCTTTA
326 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
49248 AGGGAGTGTGAGTTCTCGAGGTTTGATGAAGGATATGGGGCCAATATAAGGGCCAAGTACCAGCA
391 AGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * * ** *
49313 CCCATCGCACATCATGTGCGCACACCCCCTGACCCCCCGATCGTTGGAACCCTAAAGCTACCGAT
456 CCCATCACACATCATGTGCGCACACCCCC-GCCCCCCCGATCGTCGAAACCCTAATGCCGCCGGT
* * * *
49378 CAAGTTCTCTGGCGATGCTCGGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGC
520 CAAGTTCTC-GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGC
* ** * * *
49443 CCGAGCCCATCATGTGCTGCCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGACTAAACTCCG
584 CC-AGCCCAGCATGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCG
* * ** * *
49508 TATGCATAGACAGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAACGTGCGGGCGCT
648 TATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGTGGGCGCT
* * * * * *
49573 CAA-CCGGCTAGAGGGGCAGGATGCGTAAG-TCGAGGATCGGTCAGGTCCCCCTATGCATGCTGC
713 CAATCGGGC-AGAGGGGCGGGATGCGCAAGCT-GAGGATCAGTCGGGTCCCCCTCTGCATGCTGC
* * * * *
49636 CGATCCTGCTGTCGCAACCCTTGGCCTTGTCCCATCTTAGACTAGGAATGAACTCCGTATGCCTA
776 CGATCCTGCTGCCGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACT-CGTATGCCTA
* *
49701 AGCCAACTGACGAAACGAGCGGGCGGGCGGACGGGTGGGTAGTACGCCGGCCAGAGAGA
840 AGCCAAC-GACGAAACGAGCGGGCGGGCGGACGGGTGGGCACTACGCCGGCCAGAGAGA
* * *
49760 CGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGC
1 CAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
* *
49825 ATGCCAATGCCATTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
66 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * * * *
49890 TCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTTCGGTTCGAGATTTT
131 TCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAAGA-TTT
* * *
49955 TTTAAAATTTTTTTGAAAGGA-TTCTTGGCCCCAAACTTGGTAGATGTTATCCTTGTATTTTTGT
195 TTTAAAATTTTTTTGGAAGGAGTT-TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * * *
50019 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTAGTGACCATTTGAAAAA
259 TGGCATGCACAAAAAAAATCAGCTAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * *
50084 AGTGTCCCCATTTCAGACACTTCAAAGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTT
324 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
50149 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAG
389 TAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* *
50214 CACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCCGATCGTCGAAACCCTAATGCCGCC
454 CACCCATCACACATCATGTGCGCACA-CCCCC-GCCCCCCCGATCGTCGAAACCCTAATGCCGCC
* * * * *
50279 GGTCAGGTTCTGCGACGATGCTCTGACGATGGTGCCCTGATGAAGAAAAATATGACACCAGCACA
517 GGTCAAGTTCT-CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACA
*
50344 TGCTCCAGCCCAGCATGTGCTACCACAACCCTCGGTCC-GAT-CGATCTTAGACTGGGAATGAAC
581 TGC-CCAGCCCAGCATGTGCTGCCACAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAAC
* * * * *
50407 TACGTATGCTTAGACAGGGAATGAAGTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTGTGGC
644 TCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGTGGG
* * *
50472 CGCTCAATCGGGCAGAGGGGCGGGATGCGCAAGCTGGGGATCAG-CTGGGTCCCCCTCTACGTGC
709 CGCTCAATCGGGCAGAGGGGCGGGATGCGCAAGCTGAGGATCAGTC-GGGTCCCCCTCTGCATGC
* ** * **
50536 TGCCGATCCTGCTGCCACAACCCTTGGTCTGGTTTGATCTTAGACCGGGAACAAACTCGTATGCC
773 TGCCGATCCTGCTGCCGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCGTATGCC
*
50601 TAAGCCAATCGACGAAACGAGCGGGCGGGCGGGCGGACGGGTGGGCATTACGCCGGCCAGAGAGA
838 TAAGCCAA-CGACGAAACGA----GCGGGCGGGCGGACGGGTGGGCACTACGCCGGCCAGAGAGA
* * * *
50666 CAGGATGCGCAAGCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGAACATCTTCATATTTATAC
1 CAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
*
50731 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTGAAGCCTTCACGTGAAGTT
66 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* *
50796 TCATGGCAAGATGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAAGATTTT
131 TCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAAGATTTT
**
50861 GCAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
196 TTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
*
50926 GCATGCACAAAAAAAATCAGCTAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAG
261 GCATGCACAAAAAAAATCAGCTAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
*
50991 TGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
326 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
51056 AGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
391 AGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * ***
51121 CCCATCACACATCATGTGCACACACCCCCCAGCCCCCTCGATCGCCGAAAGTGTAATGCCGCCGG
456 CCCATCACACATCATGTGCGCACA-CCCCC-GCCCCCCCGATCGTCGAAACCCTAATGCCGCCGG
* * ** * * ***
51186 TCAAATTCTCCGTCGATGCTCCGGTGATGGTGCCCTGACGAAGAAAAGTACGGTGCCAGCACATG
519 TCAAGTTCT-CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATG
** * * * *
51251 CTAGAGCCCAGCATGTGCTGTCGCAACCCTCGGT-CTGATCCGATCTTAGACTGGGAATGAACTT
583 C-CCAGCCCAGCATGTGCTGCCACAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTC
51315 CGTATGC
646 CGTATGC
51322 CTAAGTGAAC
Statistics
Matches: 2173, Mismatches: 248, Indels: 67
0.87 0.10 0.03
Matches are distributed among these distances:
888 90 0.04
889 350 0.16
895 10 0.00
896 305 0.14
897 2 0.00
899 3 0.00
900 20 0.01
901 181 0.08
902 195 0.09
903 259 0.12
904 123 0.06
905 388 0.18
906 247 0.11
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (897 bp):
CAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
TCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAAGATTTT
TTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
GCATGCACAAAAAAAATCAGCTAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
AGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
CCCATCACACATCATGTGCGCACACCCCCGCCCCCCCGATCGTCGAAACCCTAATGCCGCCGGTC
AAGTTCTCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCC
AGCCCAGCATGTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
GCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGTGGGCGCTCAA
TCGGGCAGAGGGGCGGGATGCGCAAGCTGAGGATCAGTCGGGTCCCCCTCTGCATGCTGCCGATC
CTGCTGCCGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCGTATGCCTAAGCCAA
CGACGAAACGAGCGGGCGGGCGGACGGGTGGGCACTACGCCGGCCAGAGAGA
Found at i:53763 original size:715 final size:714
Alignment explanation
Indices: 51606--54477 Score: 3909
Period size: 715 Copynumber: 4.0 Consensus size: 714
51596 CCCTCAGGCC
* * * * *
51606 GGTCCGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGG-TGG
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCAGG
* * * * *
51670 ACGGGCGGGCGGGCACTATGCCAGTCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGT
66 -CGGGCGGGCGGGCACTATGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* *
51735 TAGGTGGGTTTTGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTGTAAATTC
130 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
51800 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAGGACTCGGTTTT-TGTTTTTC
195 ATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAGGACTCGGTTTTCTATTTTTC
51864 ATGATTTTCAAAACTTTTTACGGTTCGAGATCTTTTAAAATTTTTTC-G-TGAGTTTTCGTCCCA
260 ATGATTTTCAAAACTTTTTACGGTTCGAGATCTTTTAAAATTTTTTCAGATGAGTTTTCGTCCCA
* *
51927 AACATGGTGGACGTGGTCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCACCTAAAAACTCGA
325 AACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCACCTAAAAACTCGA
51992 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
390 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * *
52057 GCAGCAAACCTATAAAATCTCAAATGCTTTTAATGGAGTGTGAGTTCTCCAGGTTTGATGAGAGA
455 GCAGCAAACCTGTAAAATCTCAAATGCTCTTAATGGGGTGTGAGTTCTCCAGGTTTGATGAGGGA
* * * *
52122 TAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATTGCACATCATGTGCGCAGAGCCCCCGGC
520 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* *
52187 CCCCCCGATCATCGGAACCCCAATGTCACCGGTCAGGTTCT----C----C--GACGATGGTGCC
585 CCCCCCGATCATCGGAACCCCAATGCCACCGATCAGGTTCTCCGACGATGCTTGACGATGGTGCC
** * * *
52242 CTAACGAAGAAAAATGCGGCACCAGCACATG-CC-TG-C-A-T-GTGCTGCCACAACCCTCGGTC
650 CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCAACTAGTGCTGCCGCAA-CCTCGGTC
*
52301 C
714 T
* *
52302 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGAAGAAACGAACGGGCAGG
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCAGG
* * * * *
52367 TGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
66 CGGGCGGGCGGGCACTATGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * *
52432 AGGTGCGTTTAGGCATATCTT-AGTATTTCTGCATGCCAATGCCATTTTAATGG-TTGTAAATTC
131 AGGTGGGTTTAGGCACATCTTCA-TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* * * * *
52495 GTACAATGGTCCCTTAAGCCTTCACATAAAGTTTAATGGCAAGACGACTC-ATTTTCTATTTTTC
195 ATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAGGACTCGGTTTTCTATTTTTC
* * * * * * *
52559 ATGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTATAATTTTTTCAGAAAGAGTTTT-GGCCC
260 ATGATTTTCAAAACTTTTTACGGTTCGAGATCTTTTAAAATTTTTTCAG-ATGAGTTTTCGTCCC
* * *
52623 TAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
324 -AAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCACCTAAAAACTC
*
52688 GAAGTGTACAAGATTTTGTGACCATTTGAACAAAGTGTCCCCATTTCAGACACTTTAATGGCTA-
388 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * * *
52752 TTG--G-----CTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAC
453 TGGCAGCAAACCTGTAAAATCTCAAATGC-TCTTAATGGGGTGTGAGTTCTCCAGGTTTGATGAG
* * * *
52810 GGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCACATATCATGTGTGCACACCCACC
517 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CC
* * * *
52875 CCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCAATCAGGTTCTCCGACGATGCTTCGACGAT
580 CCGGCCCCCCCGATCATCGGAACCCCAATGCCACCGATCAGGTTCTCCGACGATGCTT-GACGAT
* * *
52940 GGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGC-ATGTGCTGCCGTAAC
644 GGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAG-CCAACTA-GTGCTGCCGCAAC
*
53004 TCTAGGTCT
707 -CTCGGTCT
* *
53013 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGG
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCAGG
* * *
53078 CGGGCGGGCGGGCACTATGCCGGCCAAAGAGACGGGTTGCGCAAGCTGTGGTTCGATAGGGTGGT
66 CGGGCGGGCGGGCACTATGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * *
53143 AGGTTGGTTTAGGCACATCTTCATATTTCTGCATGCCAGTGCCATTTTTATGGCTTCTAAATTCA
131 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
53208 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAGGACTCGGTTTT-TATTTTTCA
196 TACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAGGACTCGGTTTTCTATTTTTCA
53272 TGATTTTCAAAACTTTTTACGGTTCGAGATCTTTTAAAATTTTTTC-G-TGAGTTTTCGTCCCAA
261 TGATTTTCAAAACTTTTTACGGTTCGAGATCTTTTAAAATTTTTTCAGATGAGTTTTCGTCCCAA
* * *
53335 ACATGGTGGACGTGGTCCTTGTATTTTTTTTTGGCATGCACAAAAAAATTCACCTAAAAACTCGA
326 ACATGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCACCTAAAAACTCGA
*
53400 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTA
390 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
53465 GCAGCAAACCTGTAAAATCTCAAATGCTCTTAATGGGGTGTGAGTTCTCCAGGTTTGATCAGGGA
455 GCAGCAAACCTGTAAAATCTCAAATGCTCTTAATGGGGTGTGAGTTCTCCAGGTTTGATGAGGGA
* *
53530 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCAGACCCCCCGGC
520 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * *
53595 CCCCCCGATCGTCAGAACCCCAATGCCACCGATCAGGTTCTCCTACGATGCTCTGACGATGGTAC
585 CCCCCCGATCATCGGAACCCCAATGCCACCGATCAGGTTCTCCGACGATGCT-TGACGATGGTGC
* *
53660 CTCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCTAACTAGTGCTGCCGCAACCATCGG
649 CCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCC-AACTAGTGCTGCCGCAACC-TCGG
53725 TCT
712 TCT
* *
53728 GGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAACGGGCAGG
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCAGG
* * *
53793 CGGGCGGGAGGGCAGTATGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGGTCGATAGGGTGGT
66 CGGGCGGGCGGGCACTATGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
53858 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCATTTTTATGGCTTGTAAATTCA
131 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * *
53923 TACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGAAAGATGACT-TGTTTTCTTTTTTTCA
196 TACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAGGACTCGGTTTTCTATTTTTCA
* ** * * * * *
53987 -CATTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
261 TGATTTTCAAAACTTTTTACGGTTCGAGATCTTTTAAAATTTTTTCAG-ATGAGTTTTCGTCCCA
* * * * ** * *
54051 AACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCA-TAAAAAATTAAGATAAGAACCCGA
325 AACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCACCTAAAAACTCGA
*
54115 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTG
390 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
54180 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTTGTGAGTTCTCGAGGTTTGATGAGG
455 GCAGCAAACCTGTAAAATCTCAAATGCTC-TTAATGGGG-TGTGAGTTCTCCAGGTTTGATGAGG
*
54244 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCCG
518 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * ** * * ** * **
54309 GTCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGTGATGCTCCGGTGATGGT
583 GCCCCCCCGATCATCGGAACCCCAATGCCACCGATCAGGTTCTCCGACGATGCT-TGACGATGGT
* * * * *
54374 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGTCTGAGCCCAGC-ATGTGCTACCGCAACCCT
647 GCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAG-CCAACTA-GTGCTGCCGCAA-CCT
** *
54438 CAATCC
709 CGGTCT
* * * *
54444 AGTCTGATCTTAGACTGGGGATGAACTCCATATG
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATG
54478 ATTAGACTGG
Statistics
Matches: 1916, Mismatches: 204, Indels: 92
0.87 0.09 0.04
Matches are distributed among these distances:
690 17 0.01
691 82 0.04
692 1 0.00
693 44 0.02
694 4 0.00
695 106 0.06
696 159 0.08
697 9 0.00
698 129 0.07
701 1 0.00
704 40 0.02
705 1 0.00
706 1 0.00
708 1 0.00
709 29 0.02
710 106 0.06
711 183 0.10
712 105 0.05
713 5 0.00
714 48 0.03
715 470 0.25
716 238 0.12
717 119 0.06
718 18 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (714 bp):
GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCAGG
CGGGCGGGCGGGCACTATGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAGGACTCGGTTTTCTATTTTTCA
TGATTTTCAAAACTTTTTACGGTTCGAGATCTTTTAAAATTTTTTCAGATGAGTTTTCGTCCCAA
ACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCACCTAAAAACTCGAA
GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
CAGCAAACCTGTAAAATCTCAAATGCTCTTAATGGGGTGTGAGTTCTCCAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
CCCCCGATCATCGGAACCCCAATGCCACCGATCAGGTTCTCCGACGATGCTTGACGATGGTGCCC
CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCAACTAGTGCTGCCGCAACCTCGGTCT
Found at i:56017 original size:904 final size:892
Alignment explanation
Indices: 53734--59745 Score: 7434
Period size: 904 Copynumber: 6.8 Consensus size: 892
53724 GTCTGGTCCA
*
53734 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAACGGGCAGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A--AAC--G-AGGCGGGC-
* * * *
53799 GGAGGGCAGTATGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGGTCGATAGGGTGGTAGGTGG
58 ---GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
** *
53864 GTTTAGGCACATCTTCATATTTCTGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAAT
120 GTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * * *
53929 GGTCCCTTAAGCCTTCACATGAAGTTTCATGGAAAGATGACTTGTTTTCTTTTTTTCAC-ATTTT
185 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * *
53993 TGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
250 TGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * * * * *
54058 TAGATGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAATTAAGATAAGAACCCGAAGTGTACA
315 TAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
54123 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
380 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAA
*
54188 CCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
445 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
54253 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCCGGTCCCCCC
510 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
* *
54317 GATC-ACCGGAACCCCAATGCCGTCGGTCAGGTTCTTCG-GT-GATGCTCCGGTGATGGTGCCCC
575 GATCGA-CGGAACCCCAATGCCGTCGATCAGGTTCTCCGAGTCGATGCTCCGGTGATGGTGCCCC
* * * * * *
54379 GACGAAGAAAAATGCGGCACCAGCACATGTCTGAGCCCAGCATGTGCTACCGCAACCCTCAATCC
639 GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGATCC
* * * * *
54444 AGTCTGATCTTAGACTGGGGATGAACTCCATATGATTAGACTGGGAATGAACTCTGTATGCCTAA
704 GGTC-GATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * ** *
54509 GTCAAACCATGAAATGAGCATGCGGGCGCTCAGCCGGCCAGAGGCACGGGATACGCAAGCCGGGG
767 GTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * * * ** * * * **
54574 ATCGACTGGGTCCCCCTTTGCATGCTGTCGATCCTGCTACTGCAACTC-TCAGTCCGGTCCA
832 ATCGACCGGGTCCCCCTCTACGTGCTGCCAATCCTGCTGCCACAACCCTTGA-TCCAGTCTG
* * *
54635 ATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGACACGAGTGGGCGGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---GGCGGGCGGGCA
*
54700 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGC
63 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* **
54765 ACATCTTCATTTTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
128 ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * * *
54830 AGGCCTTTACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACAAATTTTGAAACTT
193 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * * *
54895 TTTGCTGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTCTGGCCCCAAACTTGGTAGACCTG
258 TTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
54960 ATCCTTGTATTTTTTTTGGCATGCACAAAAATATTCAGCTAAGAACTCGAAGTGTACAAGATTTT
323 ATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
55025 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT-AGCAGCAAACCTGTA
387 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGA-CAGCAAACCTGTA
* * *
55089 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGTGGTTTGATGACGGATAGGGGGCCAATA
451 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
*
55154 TAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCTCCCCGGCCCCCCCGATCG
516 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCCGGCCCCCCCGATCG
*
55219 ACGGAACCCCATTGCCGTCGATCAGGTTCTCCGGCGATGCTCCAGCGATGCTCCGGTGATGGTGC
580 ACGGAACCCCAATGCCGTCGATCAGGTTCT-C--CGA-G-T----CGATGCTCCGGTGATGGTGC
* **
55284 CCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATATGCTGCCGTAACCCTCGA
636 CCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGA
* * * * *
55349 TCCGGTCCAATCTTAAACTATGAATGAACTTCGTATGCTTAGAATGGGAATGAACTCCGTATGCC
701 TCCGGT-CGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * *
55414 TAAGTTAACCCATAAAACAAGCGTGCGGGCTCTCAGCCGTCTAGAGGGGCGGGATGCGCAAGCCG
764 TAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * ** **
55479 GGGATCGACCAGGTCCCCCTCTGCATGCTGCCAATCCTGCTGCCACAACCCTTGATCTTGTCCA
829 GGGATCGACCGGGTCCCCCTCTACGTGCTGCCAATCCTGCTGCCACAACCCTTGATCCAGTCTG
* * *
55543 ACCTTAGACTGGAAATTG-ACTCCGTATGCCTAAGCCAACCGACGAAACGA-TCGGGCGGGCACT
1 ATCTTAGACTGGGAA-TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGGCGGGCACT
* * * *
55606 ACGTCGGCCAGAGAGACGAGATGTGCAAGCCGTGGATCGATAGGG-GGTAGGTGGGTTTAGGGAC
65 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
** *
55670 ATCTTTTTATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTTAATTCATACAATGGTCCCTTAA
130 ATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * ** *
55735 GCCTTCACGTGAAGTTTCGTGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAAATTTT
195 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * *
55800 TCCGGTTCGGGATTTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCAAAACTTGGTAGACGTGA
260 TGCGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * * * *
55865 TTCTTGTATATTTGCTGGCATGCCAAAAAAAATTCAGCCAAAAACTCAAAGTGTTCAAGATTTTG
324 TCCTTGTATTTTTGTTGGCATG-CAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * * *
55930 TGACCATTTGAACAAAGTGTGCCCATTTTAGACACTTTAATGGCTACTGACAGCAAACCTATAAA
388 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAA
* **
55995 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAATTTTGATGAGGGATAGGGGGCCAATATA
453 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * *** *
56060 AGGGCCAAGTACCAGCA-CCATCACACATCATGTACGCACA-CCCCCCGAAACCCCCAATC-ATC
518 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGA-C
* *
56122 GGAACCCCAATGCCGTCGATCAGGTTCTCTGA-T-GATGCTCCGGTGATGGTGCCCC-AGCAAAG
582 GGAACCCCAATGCCGTCGATCAGGTTCTCCGAGTCGATGCTCCGGTGATGGTGCCCCGA-CGAAG
** ** *
56184 AAAAATGA-GGCACCAGCACATGCCCGAGCCCAATATGTGCTGCTGCAACCCTCGGTCCGGTCCG
646 AAAAAT-ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCGGT-CG
56248 ATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
709 ATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * *
56313 CAAGAAACGAGCGTGCGGGCGCTAAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATC
774 CATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACC
* * * * * *
56378 GGGTCCCCCACTATGTGCTGTCAATCCTACTGTCACAACCC-TCAGTCCAGTCTG
839 GGGTCCCCCTCTACGTGCTGCCAATCCTGCTGCCACAACCCTTGA-TCCAGTCTG
* *
56432 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---GGCGGGC--G--
* *
56497 GGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
59 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* **
56562 AGGCACATCTTCATATTTCTATGTGCCAACACCATTTTTATGGCTTGTAAATTCATACAATGGTC
124 AGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * **
56627 CCTTAAGCCTTCACGTGAAGCTTCATGGCAACACGACTCGTTTTCTATTTTTAAAAATTTTTGAA
189 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * **
56692 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAGGGAGTTTTGGCCCCCAACTTCTTAGA
254 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
56757 CGTGATTCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
319 CGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
56822 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCT
383 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCT
*
56887 GTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
448 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
56952 ATATAATGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-TCCCCCGGCCCCCCCGAT
513 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGAT
* * * * * *** * *
57016 CGTCGGAACCCCAATGCCGCCGATCAGGTTCTCC-TG-CGATACTCTGACAATGGTACCTCGACG
578 CGACGGAACCCCAATGCCGTCGATCAGGTTCTCCGAGTCGATGCTCCGGTGATGGTGCCCCGACG
* * *
57079 AAGAAAAAGACAGCACCAGCACATGCCCGAACCCAGCATGTGCTGCCACAA--C-C-AT-C-G--
643 AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCGGTC
*
57136 G-TC-----C--G-AT---CT--G-AT-CTTAGACTGGGAATGAACTCTGTAT-CCGTAAGTCAA
708 GATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC-TAAGTCAA
* * ** * *
57184 ACCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAAAGGCGGGATGCGCAAGCCCGGGATCGG
772 CCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
** * * * * * * **
57249 TAGGGGCCCCCTCTATGTGCTGTCAATCCTACTGTCGCAACCCTCAATCCAGTCTG
837 CCGGGTCCCCCTCTACGTGCTGCCAATCCTGCTGCCACAACCCTTGATCCAGTCTG
* *
57305 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCAGGCGGGTG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-C--G-AGGCGGGCG
* * *
57370 GGCACTATGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTG
59 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*** * *
57435 AGGCACATCTTCATATTTCTACATGCCAAAGCCATTTTTATGGCTTGTAAATTCATGCAATGGTC
124 AGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
57500 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCGAA
189 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * * *
57565 ACTTTATGCTGTTCGAGATTTTTTAAAATTTTTTCGGAAGGGGTTTTGGCCCCAAGCTTGGTAGA
254 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
57630 CATGATGCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGA
319 CGTGATCCTTGTATTTTTGTTGGCATGC-AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
57695 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAAACACTTTAATGGCTACT-AGCAGCAAACC
383 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGA-CAGCAAACC
* * * * *
57759 TATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTACCCAAGGTTTGATGAGGGATAGGGGGCT
447 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
57824 AACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCTGA
512 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
* * ** *
57889 TCGACGGAACCCCAATGCCGTCGGTCAGGTTCTCC-AGT-GATACTCCGACGATGGTGCCCCGGC
577 TCGACGGAACCCCAATGCCGTCGATCAGGTTCTCCGAGTCGATGCTCCGGTGATGGTGCCCCGAC
* *
57952 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGCGCTGCCACAA--C-C-AT-C-G-
642 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCGGT
*
58010 -G----T---C-----TG-A-TCC-AAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
707 CGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *** * *
58058 CCTACGAAATGAGCGTGCAGGCGCTCAGCCGATGAGAGGGGCGGGATGCGCAAGTCGGGGATCAA
772 CCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * * * ** * *
58123 CCGGGTCCTCCTCTGCGTGCTACCGATCCTGCTGCCGTAACCCTTGGTCTAGTCTG
837 CCGGGTCCCCCTCTACGTGCTGCCAATCCTGCTGCCACAACCCTTGATCCAGTCTG
* *
58179 ATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-AGGCGGGCGGGCA
* * *
58244 CTACGCCGGCTAGAGAGATGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
63 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
58309 ACATCTTCATATTTCTGTGTGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCTT
128 ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* *
58374 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCTTTTTCTATTTTTCACGATTTTGGAAACTT
193 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
** * * * ** *
58439 TTTGCGGTTCAAGTTTTTTTTAATTTTTTTCGGAAGGAGTTTTCACCCCAAACTTGGTAGACGTA
258 TTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* *
58504 ATTCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTT
323 ATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * *
58569 ATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGCAA
387 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAA
* * *
58634 AATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTC-ATTGTTTGATGAGGGGTAGGGGGCCAATA
452 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCCAATA
* * **
58698 TAGGGGGCCAAGTTCCAGCACCCATCGCACATCATGTGCGCACA-CTGCCCGGCCCCCCCGATCG
516 TA-AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCG
* * * * * * ** **
58762 CCGGAACCCCATTACCGCCGGTTAGGTTCTCCGA--CGATGCTCCGACGATGGTGCCCCGGTGAA
580 ACGGAACCCCAATGCCGTCGATCAGGTTCTCCGAGTCGATGCTCCGGTGATGGTGCCCCGACGAA
* * * * *
58825 GAAAAATGCGGCACCAGCTCATGCCCAAGCCCAGTATGTGCTGCCACAACCCTCGGTCCGGTCTG
645 GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCGGTC-G
*
58890 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGGACTCCGTATGCCTAAGTCAAC
709 ATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * **
58955 CCACGAAACGAGCATGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGT
773 CCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAC
** * * * * * **
59020 TTGGTTCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCATCGGTCTGGTCTG
838 CGGGTCCCCCTCTACGTGCTGCCAATCCTGCTGCCACAACCCTTGATCCAGTCTG
* *
59075 ATCTTAGACTGGGAATTAACTCCGTATGCCTAAGCCAACCGACGAAACTAGCGGACAGACGGGTG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A--A----AC-GA--GGCG
* * * * * *
59140 GGCGGGCACTACGTCGACTAGAGAGACGAGATGCGCAAGTCGTGGATTGATAGGGTGGTAGGTGG
55 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* **
59205 GTTTAGGGATGTCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
120 GTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
59270 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTT
185 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
*
59335 TAAAACTTTTT-CTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
250 TGAAACTTTTTGC-GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * *
59399 GTAGACGTGATCCTTGTATTTTTCTTGGCATGCAAAAAAAAATTCAACTAAAAAGTCGAAGTGTA
314 GTAGACGTGATCCTTGTATTTTTGTTGGCATGC-AAAAAAAATTCAGCTAAAAACTCGAAGTGTA
59464 CAAGATTTTGT-ATCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGC
378 CAAGATTTTGTGA-CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGC
* * *
59528 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCACGAGGTCTGATGAGGGATAGG
442 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * * * **
59593 GGGCAAATATAAAGGCCAAGTACCAGCACCCTTCACACATCATACGCGCACA---------CCCC
507 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
* * * ** *
59649 CCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCG-G-CGATGCTCCGACGTTGGTGCC
572 CCCGATCGACGGAACCCCAATGCCGTCGATCAGGTTCTCCGAGTCGATGCTCCGGTGATGGTGCC
**
59712 CCGGTGAAGAAAAATACGGCACCAGCACATGCCC
637 CCGACGAAGAAAAATACGGCACCAGCACATGCCC
59746 CAGTGAAGAA
Statistics
Matches: 4483, Mismatches: 514, Indels: 234
0.86 0.10 0.04
Matches are distributed among these distances:
869 2 0.00
870 535 0.12
871 42 0.01
872 4 0.00
873 637 0.14
874 295 0.07
875 5 0.00
876 2 0.00
877 9 0.00
879 2 0.00
880 3 0.00
881 1 0.00
883 2 0.00
886 1 0.00
888 6 0.00
889 190 0.04
890 90 0.02
891 1 0.00
892 3 0.00
893 178 0.04
894 98 0.02
895 294 0.07
896 182 0.04
897 339 0.08
898 269 0.06
899 2 0.00
900 5 0.00
901 84 0.02
902 3 0.00
903 201 0.04
904 715 0.16
905 5 0.00
908 273 0.06
909 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGGCGGGCACTA
CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
TCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
GCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
CTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATC
TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGACGGAA
CCCCAATGCCGTCGATCAGGTTCTCCGAGTCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAA
TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCGGTCGATCTTAG
ACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCC
CCTCTACGTGCTGCCAATCCTGCTGCCACAACCCTTGATCCAGTCTG
Found at i:56278 original size:25 final size:26
Alignment explanation
Indices: 56250--56301 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
56240 CCGGTCCGAT
56250 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
56275 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
56301 C
1 C
56302 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:58921 original size:26 final size:26
Alignment explanation
Indices: 58892--58944 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
58882 CCGGTCTGAT
58892 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
58918 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
58944 C
1 C
58945 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:60455 original size:26 final size:26
Alignment explanation
Indices: 60426--60478 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
60416 CCGGTCTGAT
*
60426 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
60452 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
60478 C
1 C
60479 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:62635 original size:906 final size:902
Alignment explanation
Indices: 60509--63004 Score: 3426
Period size: 906 Copynumber: 2.8 Consensus size: 902
60499 AGCATGCATC
* * *
60509 CCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTTGATCCTGCTACCACAACCCTC-AGTCT-AG
1 CCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATCCTGCTACCACAACCCTCGA-TCTGA-
* *
60572 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACG-A-GTG-GGCGG
64 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACG-GCGGGGG
*
60634 GCGGGCGGGCACTACGCCGGCCAAAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
128 GCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
60699 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTCTTATGGCCTGTAAATTCATAC
193 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
60764 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGAT
258 AATGGT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * * *
60829 TTTCAACACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCACCAAACA
322 TTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
60894 TGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCAAGAAAAAAAATTCAACTAAAAAGTCAAAG
387 TGGTAGACGTGATCCTTGTATTTTTCTTGGCATGC-A-AAAAAAAATTCAGCTAAAAACTCGAAG
* *
60959 TGTACAAGATTTTATAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
450 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * *
61024 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGTTCACGAGGTCTGATGAGGGAT
515 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * * * *
61089 AGGGGGCAAATATAAAGGCCAAGTACCAGCACCCTTCACACATCA--TGCGCGCACACCCCCCGG
580 AGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACACACCCCCCGG
* * * * * * * * **
61152 TCCCCCCGATCGTCGGAACCCCAATGCGGTCGGTCATGTTCTCCGGCGATGCTCTGACGTTGGTA
645 CCCCCCCGATCGTCGGAACCCCAAAGCCGCCGATCAGGTTCTCCGGCGATGCACCGACAATGGTA
** *
61217 CCCCGGTGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATTTACTGCCGCAACCATCG
710 CCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTACTGCCGCAACCATCG
* * * *** *
61282 GTCCGCTCTGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGATAGGGAATGAACTCTGTATGC
775 GTCCGCTCCGATCATAAACCAAGAATGAACTCCGTAAGCTTAGATAGGGAATGAACTCCGTATGC
* * * *
61347 CTAAGTCAACCCACGAAACGAGTGTGCGGGCGATCAGCCGGCCAAAGGGGTGGGATGCACAAG
840 CTAAGTCAACCCACGAAACGAGCGTGCCGGCGATCAGCAGGCCAAAGGGGTGGGAGGCACAAG
** * * * * * * *
61410 CCGGGGATCGGTCGGGTCCCTCTCTACCTGCTGCCGATCCTGCTGCCACAACCCTTGGTCCGATC
1 CCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATCCTGCTACCACAACCCTCGATCTGATC
* * * *
61475 TAATTTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGGAACG-A--GC---GGGCG
66 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGCGGGGGGCG
* * * *
61534 GGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGCAGGTGG
131 GGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * ***
61599 GTTTAGGTACATCATCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
196 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
61664 GGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTATCATGATTTT
261 GG-TCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * * *
61729 CAAAACTTTTTACGGCTCGAGATTTTTTAAAATTCTTTT-GGAAGCATTTTTGGCCCCAAACTTG
325 CAAAACTTTTTACGGTTCGGGATTTTTTAAAATT-TTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * *
61793 GTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTA
389 GTAGACGTGATCCTTGTATTTTTCTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTA
61858 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
454 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
61923 AACCTGTGAAATGTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTTGATGAGGGATAGGG
519 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * *
61988 GGCCAATATAAGGGCCAAGTACTAGTACCAATCGCACATGATGTGCGCACACACCCCCTCGACCC
584 GGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACACACCCCC-CGGCCC
* * *
62053 CCCCGATCG-CTGGAACCCCAAAGCCGCCGATCAGGTTCTCTGGCGATGCACCGGCAATGGTGCC
648 CCCCGATCGTC-GGAACCCCAAAGCCGCCGATCAGGTTCTCCGGCGATGCACCGACAATGGTACC
* * * * *
62117 CCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGTATGTGCTGCTGCAACCCTCGGT
712 CCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTACTGCCGCAACCATCGGT
* * * *
62182 CTGGTCCGATCATAAACCAAGAATGAACTCCGTATGCTTAGACT-GGGAATGAAGTCCGTATGCC
777 CCGCTCCGATCATAAACCAAGAATGAACTCCGTAAGCTTAGA-TAGGGAATGAACTCCGTATGCC
* * * * * ** *
62246 TAAGTCAAGCCATGAAATGAGCGTGCCGGTGCTCAGCAGGCCTGAGGGGTGGGAGGCGCAAG
841 TAAGTCAACCCACGAAACGAGCGTGCCGGCGATCAGCAGGCCAAAGGGGTGGGAGGCACAAG
* **
62308 TCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATCCTGCTACCGTAACCCTCGATCTGATC
1 CCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATCCTGCTACCACAACCCTCGATCTGATC
* * * * *
62373 CGATCTTAAACTAGGAACGAACTCCATATGCCTAAGCCAACCGACGAAACGAACGGGCGGGTGGG
66 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAC-GGCGGG-GGG
* **
62438 CGGGCGGGCACTATGCCGGCCAAAGAGACGGGATGCGCAAGTTGTGGATCGATAGGGTGGTAGGT
129 CGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
62503 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
194 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
62568 ATCGTCCTTTAAGCCTTCACGTGATGTTTCATGGCAAGACGGCTCGTTTTCTATTTTTCATGATT
259 ATGGTCC-TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * *
62633 TTCAAAACTTTTTGA-TGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAGCT
323 TTCAAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * * *
62697 AGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTG
387 TGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * *
62762 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCGATTTCAAACACTTTAATTGCTACTGGCAG
452 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
62827 CAAACCTGTAAAATCTCAAATGCTCTTGAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
517 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
*
62892 GGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGTGCACAC-CCCCCCGGCC
582 GGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACACACCCCCCGGCC
* *** * * *
62956 CCCCCGATCATCGGAACCCCAATTTCGTCGGTCAGGTTCTCCGGTGATG
647 CCCCCGATCGTCGGAACCCCAAAGCCGCCGATCAGGTTCTCCGGCGATG
63005 GTGCCCCGAC
Statistics
Matches: 1394, Mismatches: 179, Indels: 41
0.86 0.11 0.03
Matches are distributed among these distances:
895 182 0.13
896 1 0.00
897 279 0.20
898 312 0.22
899 3 0.00
901 98 0.07
902 3 0.00
904 43 0.03
905 13 0.01
906 459 0.33
907 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
CCGGGGATCGACCGGGTCCCCCTCTACATGCTGTCGATCCTGCTACCACAACCCTCGATCTGATC
TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGCGGGGGGCG
GGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC
AAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTCTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACACACCCCCCGGCCCCCC
CGATCGTCGGAACCCCAAAGCCGCCGATCAGGTTCTCCGGCGATGCACCGACAATGGTACCCCGA
CGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTACTGCCGCAACCATCGGTCCGC
TCCGATCATAAACCAAGAATGAACTCCGTAAGCTTAGATAGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACGAGCGTGCCGGCGATCAGCAGGCCAAAGGGGTGGGAGGCACAAG
Found at i:63712 original size:26 final size:26
Alignment explanation
Indices: 63683--63733 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
63673 AGGTCCGATC
*
63683 TTAGACTGGGACTGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
* *
63709 TTAGACTTGGAATGAACTTCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
63734 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:64900 original size:901 final size:902
Alignment explanation
Indices: 63010--72988 Score: 6450
Period size: 901 Copynumber: 10.9 Consensus size: 902
63000 TGATGGTGCC
* ** * * * * * * *
63010 CCGACGAAATGAGCGGGTGGGCGGGCGGGTGGGTACTACACCGGCTAGAGAGACAGGATGCTCGA
1 CCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAA
63075 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
66 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
*
63140 TTTTTATGGCTTGTAAATTCATACAATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
131 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
63205 GACCCGTTTTCTATTTTTCATAATTTTTGAAACTTTTT-ACGGTCTGGATTTTTTAAAATTTTTT
196 GACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTAAAGGTCAGGATTTTTTAAAATTTTTT
* * *
63269 TGGAAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGCCATACA-TAAA
261 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC-TACACAAAA
* * *
63333 AAAATTCATCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTC
325 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
63398 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
390 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
63463 GTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
455 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
63528 TCATGTGTGCACATCCCCCCCGACCCCCCTGATCGCCGGAACCGCAATGCCGTCGGTCAGGTTCT
520 TCATGTGCGCACA-CCCCCCCGGCCCCCCCGATCGACGAAACCCCAATGCCGTCGGTCAGGTTCT
* *
63593 -C--CA-------ACGATGGTGCACCGACGAAGAAAAATGGGGCACCAGCACATGC-CTGAGCCC
584 CCAGCATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTC-GAGCCC
* * * *
63647 AGCATGTGCTGCCGCAACCCTCGGTCAGGTCCGATCTTAGACTGGGACTGAACTCCGTATGGTTA
648 AGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * *
63712 GACTTGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGAGTGTGGGCACTCAGCCGGC
713 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCTCAGCCGGC
* * * **** *
63777 CAGAGGGGCGGGATACACAAGCCGGGGATCG-GCTGGGTCTGTTTCTGCGTGCTGTCGATCCTGC
778 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCT-ACGATCCTGC
* * * ** * *
63841 TGCCGTAACCCTCGGTCCGGGCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
841 TACCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
63903 TCGACGAAACGAACGGGC-GGATGGGCGGGCGGGTACTACGCTGGCCAGAGAGACGGGATGCAAA
1 CCGACGAAACGAGCGGGCAGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACA
*
63967 AGCCGTGGATCGATAGGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
65 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* * * * *
64032 ATTTCTATGGCTTGTAAATTCGTACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCGTGGCAAGT
130 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
64097 CGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTAAAGTTCAGGATTTTTTAAAATTTTT
195 CGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTAAAGGTCAGGATTTTTTAAAATTTTT
* * * * **
64162 TTGGAAGGAGTTTTGGTCCTAAACTTGGTAGACGTGATCCTTTTATTTTTTTTGGC-ACGTAAAA
260 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTACACAAAA
64226 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
325 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
64291 CAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGA
390 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
64355 GTTCTCGATGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
455 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
64420 TCATGTGCGCGCACCCCCTCGGCCCCCCCGATCGGCGGAACCCCAATGCCGCCGGTCAGGTTCTC
520 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGACGAAACCCCAATGCCGTCGGTCAGGTTCTC
* * * * * *
64485 CAGCATGCTTCGACGATCGTGCCCCGACAAAGAAAAATGCAGCACCAGCACATGCTCAAGCCTAG
585 CAGCATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAG
* * * *
64550 CATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGTGAATGAACTCCGCAAGTTTAGA
650 CATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * *
64615 CTGGGAATGAACTCCATATGCCTAAGTTAACCCACGAAACAAGCGTGAGGGCGCTCAGCAGGCCA
715 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCTCAGCCGGCCA
* * * * *
64680 GAGGGGCGGGATGCGCAAACCGGGGATAGGTCGGGTCCCCCTCTGCATGTGGT-CGAT-CTTCTT
780 GAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGC--GTGCTACGATCCTGC-T
* *
64743 ACCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
842 ACCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
64804 CCGATGAAACGAGCGAGCAGGCGGGAGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAA
1 CCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAA
* * * *
64869 GCCGTGGAACGATAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTCTGCGTGCCAATGCCA
66 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
*
64934 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGAC
131 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
64999 GACTCATTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCGAGATTTTTGAAACCATTTG
196 GACTCGTTTTCTATTTTTCATAATTTTTG-AA------A-----C----TTTTT--AA--A----
* * *
65064 CGGTTCGGGATTTTTTTAAAACTTTTTTGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATC
237 -GG-TCAGGA-TTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * * *
65129 CTTGTATTTTTGTTGGCTTGCACAAAAAAAAATCAGCTACAAACTCGAAGTGTACAAGATTTTGT
299 CTTGTATTTTTGTTGGC-TACACAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
* *
65194 GACCATTTGAAAAAAGTGTCCCCATTTTAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
363 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
65259 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAGAA
428 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* **
65324 GGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCCCCGGCCCTTCCGATC-ACTG
493 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGAC-G
* **
65388 AAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAA
557 AAACCCCAATGCCGTCGGTCAGGTTCTCCAGC-ATGCTCCGACGATGGTGCCCCGACGAAGAAAA
* * * * *
65453 ATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGGTCTGATCTT
621 ATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTT
* * * * *
65518 AGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGCAAGCCTAAGTCAACCAACA
686 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
*
65583 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGA-GGG-GGGATGCGCAAGCCGGGGATCGATCGGGT
751 AAACGAGCGTGAGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGT
* * * * * *
65646 CCCCCTCTGCGTGCTACCGATCCTACTACCGCAACCATCGATCCGGTCCAATCTTAGATTGGGAA
816 CCCCCTCTGCGTGCTA-CGATCCTGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAA
65711 TGAACTCCGTATGCCTAAGCCAA
880 TGAACTCCGTATGCCTAAGCCAA
* * ** * **
65734 TCGACGAAACGAGC-GG-A--CGGGCGGGTGGGCTTTACCCCGGCCAGAGAGACGGGATGTGCAA
1 CCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAA
* *
65795 GCCGTGGATCGATAGGGTGGTAGGTGGGTTGAGGCACATCTTCATATTTCTGCATGCCAATGCCA
66 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
*
65860 TTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
131 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
65925 GACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-ACGGTCCGAGATTTTTTAAAATTTTT
196 GACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTAAAGGTCAG-GATTTTTTAAAATTTTT
* * *
65989 TCGGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
260 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC-TACACAAA
* * ** * * *
66054 AACAA-TCAACTAAAAACTCAAAGCATACAATATTTTGTGATCATTTGAAAAAAGTGTCCTCATT
324 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
66118 TCAGACACTTTAATGACTACTGGCAGTAAACTTGTAAAATCTCATATGCTCTTTAAGGGGGTGTG
389 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
66183 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATGTAAGGGCCAAGTACCAGCACCCATCGCAC
454 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** *
66248 ATCATGTGCGCACA--CCCCTGGCCCCCCCGATCGTTGAAACCCCAATGCAGTCGGTCAGGTTCT
519 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGACGAAACCCCAATGCCGTCGGTCAGGTTCT
* * *
66311 CCGATG-ATGCTCCGATGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGAC
584 CC-A-GCATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCC
* * * * *
66375 AAGCATGTGCTGCCACAACCCTCGGTC-CAGTTCGATCTTAGACTGGAAATGAACTCCGTATGCT
647 CAGCATGTGCTGCCGCAACCCTCGGTCTGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * *
66439 TAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGT-ACGGGCGCACAGCT
711 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGA-GGGCGCTCAGCC
* * * *
66503 GGCCATAGGGGCGGGATGCCCAAGCAGGGGATCGATTGGGTCCCCCTCTGCGTGCTACCGATCCT
775 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTA-CGATCCT
** * * * * *
66568 GCTGTCGTAACCCTCGAT-CTAGTCTGATCTTAAACTAGGAATTAACTCCGTATGCCTAAGCCAA
839 GCTACCGCAACCCTCGATCCGA-TCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * *
66632 CCGACGAAACGAGCGGGCGGGTAGGCGGGCAGGCACTACGTCGACCAGAGAGACGGGATGCACAA
1 CCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAA
* *
66697 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTCTACGTGCCAATGCCA
66 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
*
66762 TTTTTATGGCTTGTAAATTCATACAATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
131 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** * * ** ******* * **
66827 AACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ACGATTTTGG-TTGGGCGGGCACTAA
196 GACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTAAAG-GTCAGGATT-TTTTAAAATTTT
*** *** ** * * * *
66890 GCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTGGGT--TTAGGCTC
259 TTTGG--A-AG-GA-GTTTTG-GC---CC--CAAAC--T-TGGTAG-ACGT-GATCCTT--G-T-
* * ** *** ** ** * * *
66953 ATCTTCATAT-TTCTGCATGC-CAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTT
304 AT-TT--T-TGTT-GGC-TACACAA--AAAAAATT-CAGC-TAAAAACTCA-A-AGT-GT-AC--
* * * *** * * **** *
67016 ATGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTTTTTTTCATGA-ATTTTGAAACT
353 AAG-ATT-TTGTGACCATT--T-G-AA-A-AA--AG-TGTCCCCATTTCA-GACACTTT--AA-T
*** ** ** * * * *** * **
67080 TTTTAC-GG-TTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGAC-CCCAAACTTTGTAGT
403 GGCTACTGGCAGCAA-A-CCTGTAAAA----TCT-CAA--A----TG-CTCTTTAA---GGGGGT
* * * * *** **** * * **
67142 CGTGA-TCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAG
451 -GTGAGTTCTCG-A----GGTTTG-ATG---AGGGATAGGGGGC-CAATA-T--AAG-GGCCAAG
*** * * * ** * * ****** ** ** * *
67206 -ATTTTGTGA-CCATTTG-AAAAAATGTCCCCATTATAGACACTTTAATGG-CTACTAGCAGCAA
501 TA-CCAG-CACCCA-TCGCACATCATGTGCGC-------ACACCCCCCCGGCCCCCCCG-ATC-G
* * * * ** * ** * ** *
67267 ACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGTG-GGATAGG-
554 A-C-G--AAA-CCCCAATGC-C-GT----CGGTCAG-GTTCTCCA-GCATGCTCCGACGAT-GGT
* * * * ** * * * * * * *
67330 G----GGCCAATATAAGGGCCAAGTACCAGCAC--CCATC-A-CACATCATGTGC-G-CACACCC
605 GCCCCGACGAAGAAAAATG-C-GGCACCAGCACATGC-TCGAGCCCAGCATGTGCTGCCGCA-AC
*** * * *** * * * ** *
67385 CCTCGG-C-CCCCCGATCGTCGAAAC-CCCAATG-CCGTCGGTCA-GGTT-CTCTGGCG-ACG--
666 CCTCGGTCTGATCCGATC-T-TAGACTGGGAATGAAC-TCCGT-ATGCTTAGACTGG-GAATGAA
* *** * *
67441 CTCCGGTGATG-GT--G-C--CCCGACG-AA-GAAAAATG-CGGCAC-CAGCACAAGGCC-GA-G
726 CTCC-GT-ATGCCTAAGTCAACCC-ACGAAACG-AGCGTGAGGGCGCTCAGC-C--GGCCAGAGG
** * * * * * * ** * ** * *
67494 CCCAGCATGTGC-TGCC--GTAACCCTC-GGACCAGC-CTG-AT-CTTA-GAT--TG-----GGA
784 GGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGC-TACGATCCTGCTACCGCA
* * * *
67544 A---T-GA---GCTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
848 ACCCTCGATCCGATCCG-AT-CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * ***
67594 CCCACGAAACAAGCGTGCTAGCCAGAG-GGGCGGG-A-TGCGCAATCCA-AGGATCGATCGGGTC
1 CCGACGAAACGAGCGGGC-AGGC-GGGCGGGCGGGCACTACGCCGGCCAGA-GA--GA-CGGG--
* * ** **** * * *
67655 TCCCTCTATGTGCTACCGATCC-TACCATCGCA-ACCCCCGGTCTGGTCTGATCTTAGACGCGGA
58 -------A--TGC-A-CAAGCCGT-GGATCG-ATA-GGGTGGT-AGGT-GGGT-TTAG--GC--A
** * ** * * * *** * *** ***
67718 -ATGAAC-TCTATATGCCTA-A-GCCAACTGACGA-AATAAGCGGGC-AG-GCGTACGGGCGGGG
102 CAT---CTTC-ATATTTCTACATGCCAA-TG-CCATTTTTA--TGGCTTGTAAATTCATACAATG
* * * * ** * ** * * *
67776 GGCAC-TACGTCGGC-CAGAGAGACG--AGATGCGCAAGCCGTGGA-TCGATAGGGTTGTAGGTG
159 GTCCCTTAAGCCTTCAC-GTGA-A-GTTTCATG-GCAAGAC---GACTCG-T---TTTCTA--T-
* * * * * * * * * * ***
67836 GGTTTAGGCA-CA-TCTTCATA-TTTCTACATGCTAATGCCA-TTTTTATGGTTTGTAAATTCAT
210 --TTT--TCATAATTTTTGAAACTTTTTA-AAGGTCA-G-GATTTTTTAAAATTT-T---TT--T
** * ** * * *** * * * *
67897 ACAATG-GTCCCTTAAGCCTTCACGTGAAGTTTCAATGCAAGACGACTCGTTTTCTATTTTTCAC
262 GGAAGGAGT---TTTGGCC--C-C--AAACTTGGTA-G-ACG-TGA-TC--CTTGTATTTTT---
** * **** *** ** ***** * * * * *
67961 GATT-TTTGAAACTTTTTACGGTTC-GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG-GCCC
310 G-TTGGCT-ACAC-AAAAAAAATTCAGCTAAAAACTCAAA-GTGTAC--AA-GA-TTTTGTG-AC
*** * * * **
68023 CAAACTTT-ATGGACGTGAT-CCC---T--G-TATTTTTGTAGGC-A-T-GCA-CAAA-----AA
366 C--A-TTTGAAAAAAGTG-TCCCCATTTCAGACACTTTAAT-GGCTACTGGCAGCAAACCTGTAA
* ** * * *** * * ** ** **
68071 AATTCATCTAAAAG-AATTGAA--GTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCTAT
426 AA-TC-TC-AAATGCTCTTTAAGGGGGTGTGAG-TTCT-CGA-GGTTTG--ATGAG-G--GATA-
**** * * * * * * ** ** * * ** * ** *******
68133 TTCAGACACTTTAATGG-CTACTGGCAGCAAAC-TTGCAAAATCTCAAATGCTCTTTAAGGGGGT
479 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC-ACA--TCATGTGCGC-ACACCCCCCC
* ** * * ** * * ***
68196 GTGACTTCTCGAGGTTTGCTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG-CACCCATC
540 G-GCCCCCCCGA----T-C-GA-CGA-A---ACCCCA-AT----GCC--GT--CGGTCA-GGTTC
* * * ** * * *
68260 GTACATCATG-TGCGCAC-ACCCCCCTTCGGCCCCCCGATCGACGAAACCCCAATGCCGTCGATC
583 -TCCAGCATGCTCCG-ACGA-------T-GGTGCCCCGA-CGAAGAAA----AATG-CGGC-ACC
** * * * * * *** * *
68323 AGGTTC-TCCAGCGATGCTCCGGGGATGGTGC-CCCGACGAAGAAAAATGCGGCACCAGCACATG
631 A-GCACATGC-TCGA-GC-CC-AGCAT-GTGCTGCCG-C----AACCCT-CGG--TCTG---AT-
* ** ** *
68386 CCCGAGCCCAG-CATGTGCTTATGTAACCCTCGGTCCGGTCCGAT-CTTACA-TAGGGAATGAAC
678 -CCGATCTTAGAC-TG-G-GAATG-AA----C--TCC-GT---ATGCTTAGACT-GGGAATGAAC
* * * *
68448 TCCGTATGCCTGAGTCAAACCACGAAATGAGCGT-ACGGGCGCTCAGTCGGCCAGAGGGGCGGGA
727 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGA-GGGCGCTCAGCCGGCCAGAGGGGCGGGA
** ** *** * *
68512 TGCGCAAGATGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTTAATCTTGCTGCCGCAACCCTC-
791 TGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCT-ACGATCCTGCTACCGCAACCCTCG
** * ** * *
68576 AGTTTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAT
855 A-TCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
68625 CCGGCGACACGAGCGGGCGAGCGAGCAGGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
1 CCGACGAAACGAGCGGGC-A--G-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* *
68690 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
62 ACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
*
68755 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCA
127 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * **
68820 AGACAACTCGTTTTCTATTTTTCA-AGATTTTCGAAACTTTTT-GTGGTTC-GAGATTTTTTAAA
192 AGACGACTCGTTTTCTATTTTTCATA-ATTTTTGAAACTTTTTAAAGG-TCAG-GATTTTTTAAA
*** * * * * *
68882 ATTTTTTCCTATGGAGTTTTGGGCCCAAACCTGGTAGACGTGAACCTTGTATTTTTGCTT-CCAT
254 ATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG-TTGGC-T
** * * *
68946 TTAC-AAAAAAATTCAGCTAAAAAATCGAAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGT
317 ACACAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * *
69010 CCCCATTTTAGATACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATTG-TCTTTAAG
382 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA-TGCTCTTTAAG
* * * ** *
69074 GGGGTGTCAGTTCTTGAGGTTTGATGAGGGATAGGTGGCCAATATAACTGCCAAGTCCCAGCACC
446 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * **
69139 CACCGCACATCATGTACGCACACCCCCCCGGCACACCCGATC-ATC-AGAACCCCAATGCCACCG
511 CATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGA-CGA-AACCCCAATGCCGTCG
* * * * *
69202 GACAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCCACGAAGAAAAGTGCAGCACCAGCACAT
574 GTCAGGTTCTCCAGC-ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
* *
69267 GC-CTGAGCCCAACATGTGCTGCTGCAACCCTC-G---G-T-C---C----A----G--T----T
638 GCTC-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACT
* *
69308 -CG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGTAACGAGCGTGCGGGC
702 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGC
* * * ** * ** * *
69370 TCTCAGCCGGCCAAAGGGGCAGGATGCATAAGTCAAGGATC-AGCCGGTCCCCCTCTGCGTGCTG
767 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCT-
* * * * * * * *
69434 TCGATCCTGCTATCGTAACCCTC-AGTCTGATCTGATCTTAGATTGGGAATGAACTCGGTATGCC
831 ACGATCCTGCTACCGCAACCCTCGA-TCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCC
69498 TAAGCCAA
895 TAAGCCAA
* * * ** * *
69506 CTGACGAAACGAGCGGGCACGCGGGCGGGCGGGCACTACGTCGATCAGAGAAACGGGATGCGCAA
1 CCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAA
*
69571 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTACATGCCAATGCCA
66 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* *
69636 TTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGTC
131 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
69701 AACTCGTTTTCTATTTTTCATGATTTTTGAAAGTTTTT-ATGGTTCAAGATTTTTT-AAATTTTT
196 GACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTAAAGG-TCAGGATTTTTTAAAATTTTT
* * * * *
69764 TCGGAAGGAGTTTTCGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC-AA
260 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC-TACACAAA
* *
69828 AAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
324 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
69893 TCAAACACTTAAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
389 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
69958 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
454 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
70023 ATCATGTGCGCACACCCCCTCGG-CCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
519 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGACGAAACCCCAATGCCGTCGGTCAGGTTCT
** * * *
70087 CCAGCGATGCTCCGACGATGGCACCCCGACGAAGAAAAATGCGGTACCAGCATATGCCCGAGCCC
584 CCAGC-ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCC
* ** ** * *
70152 AGCATGTGCTGTCGCAACCCTTAGTCCAATCCGATCTTAGACTGGGAACGAACTCTGTATGCTTA
648 AGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
** * * *
70217 GACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCAG-TCAGTCGG
713 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGC-GCTCAGCCGG
* * * *
70281 CCAGACGGGCAGGATGCGCAAGTCAGGGATCGATCGGGTCCCCCTCTGC---C-A--A--C--C-
777 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACGATCCTGCT
* * * * *
70335 A---TAACCCTC-AGTCTGATCCCATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAA
842 ACCGCAACCCTCGA-TCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
70393 CCAACGAAACAAGC--G--GGCGGGCGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAA
1 CCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAA
* * *
70454 GCCATGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
66 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* * *
70519 TTTTTAGGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGAC
131 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** * * **
70584 GACTCGTTTTCTATTTTTTACGATTTTTAAAACTTTTT-ACGGTTTGGGATTTTTTAAAATTTTT
196 GACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTAAAGG-TCAGGATTTTTTAAAATTTTT
* * * * * *
70648 TCGGAAGGACTTTTTGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGCCAAGCAC-AA
260 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTA-CACAAA
* *
70712 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATT
324 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
70777 TTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA-CTCAAATGCTCTTTAAGGGGGTGTG
389 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
70841 AATTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACCAGCACCCACCGCAC
454 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * *
70906 ATCATGTGTGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTAAGATTTC
519 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGACGAAACCCCAATGCCGTCGGTCAG-GTTC
* * * * *
70970 ACCGATG-ATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGC
583 TCC-A-GCATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGC
* * * ** * *
71034 CCAGCATTTGCTGCCACAATCCTCGGTCCAATCCAATCTTAGACTAGGAATGAACTCCGTATGCT
646 CCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * **
71099 TAGACTGGGAATGAACTCCGTTTTCCTAAGTCAAACCACGAAACGAATGTGCA-GGCGCTCAGCC
711 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-AGGGCGCTCAGCC
* ** *
71163 GGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTATGTGCTATCGATGCT
775 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTA-CGATCCT
* * * * * *
71228 GTTGCTGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
839 GCTACCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
71292 CCGACGAAACGAACGGGCGGGCGGGCAGGCAGGTGAGCACTATGTCGGCTAGAGAGACGGGATGC
1 CCGACGAAACGAGCGGGCAGGCGGGCGGGC--G-G-GCACTACGCCGGCCAGAGAGACGGGATGC
* * *
71357 GCAAGCCGT-GATCGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
62 ACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
*
71421 GCCATTTTTATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
127 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * ** * **
71486 AGACGACCCGTTTTCTATTTTCCACGATTTTTGAAACTTTTT-ACGGTTTGGGAATTTTTTAAAA
192 AGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTAAAGG-TCAGG-ATTTTTTAAAA
* * * *
71550 -TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGAAGATGTGATCCTTGTATCTTTGTTGGCATGC
255 TTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC-TAC
* *
71614 AC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCC
319 ACAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
71678 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGG
384 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
*
71743 GTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
449 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * *
71808 CGCACATCATGTGCGCGCA-CCCCCCGGCCCCCCCAATC-ATCGGAACCCCAATCCCGTCGGTCA
514 CGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGA-CGAAACCCCAATGCCGTCGGTCA
* * * * * * * ** *
71871 GGTTATTCGGTGATGCTTCGATGATGGTGCCCCGACGAAGAGAAATATGGCACCAGCACATGCCC
578 GGTTCTCCAG-CATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTC
* * ** * *
71936 GGGCCCAGCATGTGCTGTCATAA-CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
642 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTA
* * *
72000 TGCTTAGACTAGGAATGAACTCTGTATGCCTAAATCAACCCACGAAACGAGCGTGA--G-GCT--
707 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCTCA
* * * ** * *
72060 ---GGCCAGAGGGGCGGGATGCGCTAGCCAGAGATCGGCCGAGTCCCCCTCTGCGTGCTGCTGAT
772 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTAC-GAT
* * * *** *
72122 CCTGCTGCCGCAACCCTTGGTCC-AGTTTAATCTTAGA-TTGAGAATGAACTCCGTATGCCTAAG
836 CCTGCTACCGCAACCCTCGATCCGA-TCCGATCTTAGACTAG-GAATGAACTCCGTATGCCTAAG
72185 CCAA
899 CCAA
* ** * * **
72189 CCGACGAAACG-GAC--G--GGTGGGCGGGCGGGCACTACGCCGGTTAGAGAGGCGGGATACGTA
1 CCGACGAAACGAG-CGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACA
* * *
72249 AGCCGTGGATTGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
65 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
*
72314 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTATGCCTTCACGTGAAGTTTCATGGCAAGA
130 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * **
72379 CGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTT-ACGGTTTGGGATTTTTTAAAA-TTT
195 CGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTAAAGG-TCAGGATTTTTTAAAATTTT
* * *
72442 TTTGGAAGGAGTTTTGGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGCATGCA-TA
259 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC-TACACAA
* * *
72506 AAAAAATTCAGCTAAAAACTCAAAGCGTACAATATTTTCTGACCATTTGAAAAAAGTGTCCCCAT
323 AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * *
72571 TTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATATCGAATGCTCTTTAAGGAGGTGT
388 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
72636 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
453 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
72701 CATCATGTGCGCACA--CCCCCGGCCCCCCCGATCGCCGGAGCCCCAATGCCGTCGGTCAGGTTC
518 CATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGACGAAACCCCAATGCCGTCGGTCAGGTTC
* * *
72764 TCCGGCGATGCCCCGACGATTGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC-CTGAGC
583 TCCAGC-ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTC-GAGC
* * ** * * * *
72828 CAAGCATGTGCTGCTGCAACAATCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCGGTATGCT
646 CCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * ** *
72893 TAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGATGCTCAGCCA
711 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCTCAGCCG
*
72958 GCCAGAGGGGCGGGATGCGCAAGCCGTGGAT
776 GCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
72989 TGACAGGGTG
Statistics
Matches: 7134, Mismatches: 1362, Indels: 1176
0.74 0.14 0.12
Matches are distributed among these distances:
875 108 0.02
876 257 0.04
877 213 0.03
880 2 0.00
881 96 0.01
882 82 0.01
883 351 0.05
884 368 0.05
885 2 0.00
886 2 0.00
887 66 0.01
888 110 0.02
889 394 0.06
890 166 0.02
891 48 0.01
892 91 0.01
893 338 0.05
894 76 0.01
895 2 0.00
896 215 0.03
897 150 0.02
898 299 0.04
899 148 0.02
900 9 0.00
901 537 0.08
902 225 0.03
903 17 0.00
904 3 0.00
905 85 0.01
906 398 0.06
907 178 0.02
908 3 0.00
910 5 0.00
911 3 0.00
913 3 0.00
914 2 0.00
916 7 0.00
917 9 0.00
918 3 0.00
919 4 0.00
920 2 0.00
921 4 0.00
923 6 0.00
924 7 0.00
925 3 0.00
926 190 0.03
927 7 0.00
928 80 0.01
929 2 0.00
930 230 0.03
931 136 0.02
932 172 0.02
933 4 0.00
934 3 0.00
935 5 0.00
936 11 0.00
937 5 0.00
938 3 0.00
939 4 0.00
940 2 0.00
941 1 0.00
942 2 0.00
943 7 0.00
944 11 0.00
945 16 0.00
946 12 0.00
947 7 0.00
948 19 0.00
949 2 0.00
950 15 0.00
951 14 0.00
952 18 0.00
953 10 0.00
954 8 0.00
955 10 0.00
956 2 0.00
959 12 0.00
960 9 0.00
961 10 0.00
962 55 0.01
963 18 0.00
964 9 0.00
965 6 0.00
966 4 0.00
967 8 0.00
968 11 0.00
969 16 0.00
970 2 0.00
971 22 0.00
972 10 0.00
973 10 0.00
974 17 0.00
975 40 0.01
976 34 0.00
977 28 0.00
978 18 0.00
979 14 0.00
980 18 0.00
981 20 0.00
982 20 0.00
983 28 0.00
984 14 0.00
985 25 0.00
986 29 0.00
987 16 0.00
988 12 0.00
989 18 0.00
990 24 0.00
991 24 0.00
992 21 0.00
993 21 0.00
994 8 0.00
995 18 0.00
996 6 0.00
997 22 0.00
998 33 0.00
999 21 0.00
1000 19 0.00
1001 7 0.00
1002 1 0.00
1003 8 0.00
1004 8 0.00
1005 7 0.00
1006 4 0.00
1007 1 0.00
1008 3 0.00
1009 13 0.00
1010 18 0.00
1011 35 0.00
1012 21 0.00
1013 3 0.00
1014 6 0.00
1015 5 0.00
1016 7 0.00
1017 4 0.00
1018 4 0.00
1019 6 0.00
1020 9 0.00
1021 3 0.00
1022 3 0.00
1024 1 0.00
1026 3 0.00
1029 2 0.00
1031 47 0.01
1032 2 0.00
1033 9 0.00
1034 9 0.00
1035 1 0.00
1036 8 0.00
1037 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
CCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTAAAGGTCAGGATTTTTTAAAATTTTTT
TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTACACAAAAA
AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCCCGGCCCCCCCGATCGACGAAACCCCAATGCCGTCGGTCAGGTTCTCC
AGCATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGC
ATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCTCAGCCGGCCAG
AGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACGATCCTGCTACCG
CAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
Found at i:65051 original size:25 final size:26
Alignment explanation
Indices: 65021--65078 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
65011 ATTTTTCATA
**
65021 ATTTTTGAAACTTTTTACGGTTCGAG
1 ATTTTTGAAACCATTTACGGTTCGAG
* *
65047 ATTTTTGAAACCATTTGCGGTTCGGG
1 ATTTTTGAAACCATTTACGGTTCGAG
65073 ATTTTT
1 ATTTTT
65079 TTAAAACTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.21, C:0.12, G:0.21, T:0.47
Consensus pattern (26 bp):
ATTTTTGAAACCATTTACGGTTCGAG
Found at i:66451 original size:26 final size:26
Alignment explanation
Indices: 66411--66463 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
66401 CCAGTTCGAT
66411 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
66437 CTTAGACTAGG-AATGAACTCCGTATG
1 CTTAGACT-GGAAATGAACTCCGTATG
66463 C
1 C
66464 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:67042 original size:219 final size:219
Alignment explanation
Indices: 66658--67086 Score: 696
Period size: 219 Copynumber: 2.0 Consensus size: 219
66648 GCGGGTAGGC
* * *
66658 GGGCAGGCACTACGTCGACCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTG
1 GGGCAGGCACTAAGCCGACCAGAGAGACGAGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
66723 GGTTTAGGCACGTCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
66 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
66788 TGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTT
131 TGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGAATT
66853 TTGAAACTTTTTACGATTTTGGTT
196 TTGAAACTTTTTACGATTTTGGTT
* * * *
66877 GGGCGGGCACTAAGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTG
1 GGGCAGGCACTAAGCCGACCAGAGAGACGAGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
66942 GGTTTAGGCTCATCTTCATATTTCTGCATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAA
66 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * * *
67007 TGGTCCCTTATGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTTTTTTTCATGAATT
131 TGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGAATT
67072 TTGAAACTTTTTACG
196 TTGAAACTTTTTACG
67087 GTTCAAGATT
Statistics
Matches: 192, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
219 192 1.00
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (219 bp):
GGGCAGGCACTAAGCCGACCAGAGAGACGAGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGAATT
TTGAAACTTTTTACGATTTTGGTT
Found at i:67568 original size:26 final size:26
Alignment explanation
Indices: 67532--67584 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
67522 CCAGCCTGAT
* *
67532 CTTAGATTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
67558 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
67584 C
1 C
67585 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:68804 original size:884 final size:876
Alignment explanation
Indices: 66878--72891 Score: 7227
Period size: 883 Copynumber: 6.8 Consensus size: 876
66868 ATTTTGGTTG
* * * *
66878 GGCGGGCACTAAGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTGG
1 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
66943 GTTTAGGCTCATCTTCATATTTCTGCATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAAT
66 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * * * *
67008 GGTCCCTTATGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTTTTTTTCATGAATTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
** * * *
67073 TGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGACCCCAAACTTTG
196 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* *
67138 TAGTCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTAC
261 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
67203 AAGATTTTGTGACCATTTGAAAAAA-TGTCCCCATTAT-AGACACTTTAATGGCTACTAGCAGCA
326 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT-TCAGACACTTTAATGGCTACTGGCAGCA
* *
67266 AACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGTGGGATAGGG
390 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
67331 GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTCGGCCCCC
455 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCC
* * * * **
67396 CGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGACGCTCCGGTGATGGTGCCCCGA
519 CGATCGACGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA
* * * * * *
67461 CGAAGAAAAATGCGGCACCAGCACAAGGCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGACCAG
584 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTTCTGTAACCCTCGGTCCGG
* * * ** * * *
67526 -CCTGATCTTAGATTGGGAATGAGCTCCGTATGCTTAGACTGGGAATGAACTCTG-TATGCCTAA
649 TCC-GATCTTAGACTGGGAATGAACTCCGTATGCCTA-A--GTCAA--ACCAC-GAAATG----A
* *** ** * * * *
67589 GTC-AACCCACGAAACAAGCGTGCTAGCCAGAGGGGCGGGATGCGCAATCCAAGGATCGATCGGG
703 G-CGTACGGGCG-CTC-A--GT-C-GGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGG
* ** ** * *** * * *
67653 TCTCCCTCTATGTGCTACCGATCCTACCATCGCAACCCCCGGTCTGGTCTGATCTTAGAC-GCGG
761 TCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCTGATCTGATCTTAGACTG-GG
** * ** *
67717 AATGAACTCTATATGCCTAAGCCAACTGACGAAATAAGCGGGCAGGCGTACGGGC
825 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCA-GCG-GC-GGC
* * *
67772 GGGGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTTGTAGGTGG
1 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
67837 GTTTAGGCACATCTTCATATTTCTACATGCTAATGCCATTTTTATGGTTTGTAAATTCATACAAT
66 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
67902 GGTCCCTTAAGCCTTCACGTGAAGTTTCAAT-GCAAGACGACTCGTTTTCTATTTTTCACGATTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTC-ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
*
67966 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTT
195 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * * * * * *
68031 ATGGACGTGATCCCTGTATTTTTGTAGGCATGCACAAAAAAATTCATCTAAAAGAATTGAAGTGT
260 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA-ACTCGAAGTGT
* *
68096 ACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGC
324 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * * *
68161 AAACTTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGCTGAGGGATAGG
389 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
68226 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCTTCGGCC
454 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC--CGGCC
* * * **
68291 CCCCGATCGACGAAACCCCAATGCCGTCGATCAGGTTCTCCAGCGATGCTCCGGGGATGGTGCCC
516 CCCCGATCGACGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCC
*
68356 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTTATGTAACCCTCGGTC
581 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTTCTGTAACCCTCGGTC
* *
68421 CGGTCCGATCTTACA-TAGGGAATGAACTCCGTATGCCTGAGTCAAACCACGAAATGAGCGTACG
646 CGGTCCGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAATGAGCGTACG
*** *
68485 GGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGATGGGGATCGGCCGGGTCCCCCTCTGCGTG
710 GGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTG
** * * * *
68550 CTGTTAATCTTGCTGCCGCAACCCTCAGTTTGGTTTGATCTTAGACTGGGAATGAACTCCGTATG
775 CTGTCGATCCTGCTGCCGCAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
68615 CCTAAGCCATCCGGCGACACGAGCGGGCGAGCGAGCAGGC
840 CCTAAGCCAACCGACGAAACGAGCGGGC-AGCG-GC-GGC
68655 GAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
1 G-GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
68720 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
65 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
68785 TGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACAACTCGTTTTCTATTTTTCAAGATTT
130 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* ** * ** * * *
68850 TCGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCCTATGGAGTTTTGGGCCCAAACCTG
195 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * ** *
68915 GTAGACGTGAACCTTGTATTTTTGCTT-CCATTTACAAAAAAATTCAGCTAAAAAATCGAAGTGT
260 GTAGACGTGATCCTTGTATTTTTG-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
68979 ACAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGATACTTTAATGGCTACTGGCAGC
324 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *
69044 AAACCTATAAAATCTCAAATTG-TCTTTAAGGGGGTGTCAGTTCTTGAGGTTTGATGAGGGATAG
389 AAACCTGTAAAATCTCAAA-TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* ** * * *
69108 GTGGCCAATATAACTGCCAAGTCCCAGCACCCACCGCACATCATGTACGCACACCCCCCCGGCAC
453 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGC-C
* * ** *
69173 ACCCGATC-ATCAGAACCCCAATGCCACCGGACAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
516 CCCCGATCGA-CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
* * * * * * *
69237 CCCACGAAGAAAAGTGCAGCACCAGCACATGCCTGAGCCCAACATGTGCTGCTGCAACCCTCGGT
580 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTTCTGTAACCCTCGGT
* * * * * *
69302 CCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGTAACGAGCGTGCG
645 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAATGAGCGTACG
* * * * ** * *
69367 GGCTCTCAGCCGGCCAAAGGGGCAGGATGCATAAGTCAAGGATC-AGCC-GGTCCCCCTCTGCGT
710 GGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGA-CCGGGTCCCCCTCTGCGT
** * * *
69430 GCTGTCGATCCTGCTATCGTAACCCTCAGTCTGATCTGATCTTAGATTGGGAATGAACTCGGTAT
774 GCTGTCGATCCTGCTGCCGCAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTAT
*
69495 GCCTAAGCCAACTGACGAAACGAGCGGGCA-C-GCGGGC
839 GCCTAAGCCAACCGACGAAACGAGCGGGCAGCGGC-GGC
** *
69532 GGGCGGGCACTACGTCGATCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
1 -GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
69597 GGTTTAGGCACATCTTTATATTTCTACATGCCAATGCCATTTTTATAGCTTGTAAATTCATACAA
65 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
69662 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGTCAACTCGTTTTCTATTTTTCATGATTT
130 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * ** * *
69727 TTGAAAGTTTTTATGGTTCAAGATTTTTT-AAATTTTTTCGGAAGGAGTTTTCGCCCAAAACTTG
195 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* *
69791 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTA
260 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
69856 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTAAATGGCTACTGGTAGCA
325 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
69921 AACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
390 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
69986 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCC
455 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCC
* * * **
70051 CAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGCACCCCGA
519 CGATCGACGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA
* *
70116 CGAAGAAAAATGCGGTACCAGCATATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTAGTCCAA
584 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-T-------C-T-GT--AA
** * * **
70181 TCCGATCTTAGACTGGGAACGAACTCTGTATGCTTAGACTGGGAATGAACTCTATATGCCTAAGT
637 -CC---C-T---C--GGTCCG--GTCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
70246 CAACCCACGAAATGAGCGTGCGGGCAG-TCAGTCGGCCAGACGGGCAGGATGCGCAAGTCAGGGA
688 CAAACCACGAAATGAGCGTACGGGC-GCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGA
* * * **
70310 TCGATCGGGT-CCCC-CT-C-TGC---C-AACC--AT-----AACCCTCAGTCTGATCCCATCTT
752 TCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCTGATCTGATCTT
* * *
70360 AGACTGGGAATGAACTCCGTATACCTAAGCCAACCAACGAAACAAGCGGGC-G-GGC-G-
817 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGCGGCGGC
* * *
70416 GGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGGTAGGGTGGTAGGTGG
1 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * *
70481 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAGGGCTTGTAAACTCATACAAT
66 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
70546 GGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * * *
70611 TAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGACTTTTTGACCCAAACTTGG
196 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* *
70676 TAGACGTGATCCTTGTATTTTTGTTGCCAAGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
261 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
70741 AAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
326 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
70806 ACCTGTAAAA-CTCAAATGCTCTTTAAGGGGGTGTGAATTCTCGAGGTTTGATGAGGGATAGGGG
391 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
70870 GCCAATATAAGGGCCAAGAACCAGCACCCACCGCACATCATGTGTGCACACCCCCCCGGCCCCCC
456 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCC
* * * * * ** * *
70935 GATCGTCGGAACCCCAATGCCGCCGGTAAGATTTCACCGATGATGCTCCGGCGATGGTGCCCCGG
520 GATCGACGGAACCCCAATGCCGTCGGTCAG-GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA
* *
71000 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATTTGCTGCCACAATCCTCGGTCCAA
584 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA--TG-TG---C--T--TCTGT--AA
**** * *
71065 TCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTTTTCCTAAGT
637 -CC---C-T---C--GG--TCCGGTCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* ** * * *
71130 CAAACCACGAAACGAATGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGAT
688 CAAACCACGAAATGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGAT
* ** * * * * * *
71195 CGATCGGGTCCCCCTCTATGTGCTATCGATGCTGTTGCTGCAACCCTCGGTCCGATCTGATCTTA
753 CGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCTGATCTGATCTTA
* *
71260 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCAGGC
818 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-AGC-GGC-GGC
* * * * *
71322 AGGTGAGCACTATGTCGGCTAGAGAGACGGGATGCGCAAGCCGT-GATCGACAGGGTGGTAGGTG
1 -GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
71386 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGACTTGTAAATTCATACAA
65 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
71451 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTCCACGATTT
130 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
*
71516 TTGAAACTTTTTACGGTTTGGGAATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTT
195 TTGAAACTTTTTACGGTTCGGG-ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * *
71580 GGAAGATGTGATCCTTGTATCTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
259 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
71645 ACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
324 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
71710 AAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGG
389 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
71775 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCGCACCCCCCGGCCCCC
454 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCC
* * * * * * *
71840 CCAATC-ATCGGAACCCCAATCCCGTCGGTCAGGTTATTCGGTGATGCTTCGATGATGGTGCCCC
518 CCGATCGA-CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC
* ** * *
71904 GACGAAGAGAAATATGGCACCAGCACATGCCCGGGCCCAGCATGTGCTGTC-ATAA-CCTCGGTC
582 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-TCTGTAACCCTCGGTC
* * * ** *
71967 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTA
646 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT--A--AGTCA--AAC-C---A---CGA
* * * * * * * * *
72032 AATCAACCCACGAAACGAGCG-TGAGGCTGGCCAGAGGGGCGGGATGCGCTAGCCAGAGATCGGC
698 AAT-GA---GCG-TACGGGCGCTCAGTC-GGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGAC
* ** * * *
72096 CGAGTCCCCCTCTGCGTGCTG-CTGATCCTGCTGCCGCAACCCTTGGTC-CAGTTTAATCTTAGA
757 CGGGTCCCCCTCTGCGTGCTGTC-GATCCTGCTGCCGCAACCCTCAGTCTGA-TCTGATCTTAGA
* * *
72159 TTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-GACGGG-TG-GGC-G-
820 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-CGGGCAGCGGCGGC
* ** * * * * *
72212 GGCGGGCACTACGCCGGTTAGAGAGGCGGGATACGTAAGCCGTGGATTGACAGGGTGGTAGGTGG
1 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
72277 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
66 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
72342 GGTCCCTTATGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
** *
72407 CAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGG
196 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * * *
72471 AAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGCGTAC
261 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
72536 AATATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAA
326 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
72601 ACCTGTAAAATATCGAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
391 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
72666 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCGGCCCCCCC
456 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCC
* * * *
72730 GATCGCCGGAGCCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCCCCGACGATTGTGCCCCGAC
520 GATCGACGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGAC
* * * * **
72795 GAAGAAAAATGCGGCACCAGCACATGCCTGAGCCAAGCATGTGCTGCTGCAACAATCGGTCCGGT
585 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTTCTGTAACCCTCGGTCCGGT
* *
72860 TCGATCTTAGACTGGGAATGAACTCGGTATGC
650 CCGATCTTAGACTGGGAATGAACTCCGTATGC
72892 TTAGACTAGG
Statistics
Matches: 4468, Mismatches: 528, Indels: 253
0.85 0.10 0.05
Matches are distributed among these distances:
875 106 0.02
876 251 0.06
877 214 0.05
878 1 0.00
879 27 0.01
880 3 0.00
881 104 0.02
882 201 0.04
883 644 0.14
884 634 0.14
885 13 0.00
886 6 0.00
887 74 0.02
888 116 0.03
889 356 0.08
890 165 0.04
891 3 0.00
892 11 0.00
893 11 0.00
894 288 0.06
895 44 0.01
896 151 0.03
897 139 0.03
898 157 0.04
899 71 0.02
900 5 0.00
901 93 0.02
902 4 0.00
903 5 0.00
904 2 0.00
905 1 0.00
906 385 0.09
907 183 0.04
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (876 bp):
GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCG
ATCGACGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACG
AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTTCTGTAACCCTCGGTCCGGTC
CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAATGAGCGTACGGGCGCT
CAGTCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCG
ATCCTGCTGCCGCAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
CCAACCGACGAAACGAGCGGGCAGCGGCGGC
Found at i:70223 original size:26 final size:26
Alignment explanation
Indices: 70187--70239 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
70177 CCAATCCGAT
*
70187 CTTAGACTGGGAACGAACTCTGTATG
1 CTTAGACTGGGAACGAACTCTATATG
*
70213 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAACGAACTCTATATG
70239 C
1 C
70240 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCTATATG
Found at i:72014 original size:26 final size:26
Alignment explanation
Indices: 71976--72028 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
71966 CTGGTCTGAT
*
71976 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
72002 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
72028 C
1 C
72029 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:72575 original size:889 final size:892
Alignment explanation
Indices: 68438--72982 Score: 5656
Period size: 906 Copynumber: 5.1 Consensus size: 892
68428 ATCTTACATA
* * * * *
68438 GGGAATGAACTCCGTATGCCTGAGTCAAACCACGAAATGAGCGTACGGGCGCTCAGTCGGCCAGA
1 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-AG-G--C--TCGGCCAGA
* *** * * * ** *
68503 GGGGCGGGATGCGCAAGATGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTTAATCTTGCTGCCG
60 GGGGCAGGATGCGCAAGCCAGAGATCGACCGGGTCCCCCTCTGCGTGCTCTCGATCCTGCTGCCG
* * * * * *
68568 CAACCCTCAGTTTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCATCCGGCGAC
125 CAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
*
68633 ACGAGCGGGCGAGCGAGCAGGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
190 ACAAGCGGGC--G-G-GC--G-G-GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
68698 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
247 TGGATCGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
* *
68763 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACAACT
312 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** ** * * **
68828 CGTTTTCTATTTTTCAAGATTTTCGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCCTA
377 CGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGA
* * * * * * **
68893 TGGAGTTTTGGGCCCAAACCTGGTAGACGTGAACCTTGTATTTTTGCTT-CCATTTACAAAAAAA
442 AGGAGTTTTGGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTG-TTGGCATGCACAAAAAAA
* * *
68957 TTCAGCTAAAAAATCGAAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
506 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
69022 TACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATTG-TCTTTAAGGGGGTGTCAGTT
571 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA-TGCTCTTTAAGGGGGTGTGAGTT
* * ** * *
69086 CTTGAGGTTTGATGAGGGATAGGTGGCCAATATAACTGCCAAGTCCCAGCACCCACCGCACATCA
635 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * ** *
69151 TGTACGCACACCCCCCCGGCACACCCGATCATCAGAACCCCAATGCCACCGGACAGGTTCTCCGG
700 TGTGCGCACA-CCCCCCGGC-CCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
* * * * * *
69216 CGATGCTCCGACGATGGTGCCCCCACGAAGAAAAGTGCAGCACCAGCACATGCCTGAGCCCAACA
763 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
* * * *
69281 TGTGCTG-CTGCAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTA-A-
828 TGTGCTGTC-ACAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
69343 -
892 T
* * ** * * *
69343 --G--TCAAC-CC--A---C---GT-AA-CGAGCG-TGCGGGC-TCTCA-GC-CGGCCAAAGGGG
1 GGGAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAACGAGCGT-GCAGGCTCGGCCAGAGGGG
** * * ** *
69389 CAGGATGCATAAGTCA-AGGATC-AGCC-GGTCCCCCTCTGCGTGCTGTCGATCCTGCTATCGTA
64 CAGGATGCGCAAGCCAGA-GATCGA-CCGGGTCCCCCTCTGCGTGCTCTCGATCCTGCTGCCGCA
* * *
69451 ACCCTCAGTCTGATCTGATCTTAGATTGGGAATGAACTCGGTATGCCTAAGCCAACTGACGAAAC
127 ACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* ** *
69516 GAGCGGGCACGCGGGCGGGCGGGCACTACGTCGATCAGAGAAACGGGATGCGCAAGCCGTGGATC
192 AAGC-GG---GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * *
69581 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTACATGCCAATGCCATTTTTATAGC
253 GACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
* *
69646 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGTCAACTCGTTTT
318 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * * ***
69711 CTATTTTTCATGATTTTTGAAAGTTTTTATGGTTCAAGATTTTTT-AAATTTTTTCGGAAGGAGT
383 CTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* * * * *
69775 TTTCGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAACT
448 TTTGGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* *
69840 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTAA
513 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
69905 ATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
578 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
69970 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
643 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
*
70035 CACCCCCTCGGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGCGATGCTCC
708 CACCCCC-CGGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCC
** * * *
70100 GACGATGGCACCCCGACGAAGAAAAATGCGGTACCAGCATATGCCCGAGCCCAGCATGTGCTGTC
772 GACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC
* ** * *
70165 GCAACCCTTAGTCCAATCCGATCTTAGACTGGGAACGAACTCTGTATGCTTAGACT
837 ACAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
** * *
70221 GGGAATGAACTCTATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCAGTCAGTCGGCCAGA
1 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT----GCAGGC--TCGGCCAGA
* * * * * *
70286 CGGGCAGGATGCGCAAGTCAGGGATCGATCGGGT-CCCC-CT-C-TG--C-C-AACC--AT----
60 GGGGCAGGATGCGCAAGCCAGAGATCGACCGGGTCCCCCTCTGCGTGCTCTCGATCCTGCTGCCG
** * *
70337 -AACCCTCAGTCTGATCCCATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCAACGAA
125 CAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
70401 ACAAGCGGGCGGGCGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGG
190 ACAAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * *
70466 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAGGGCTT
255 CAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTT
* *
70531 GTAAACTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
320 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* *
70596 ATTTTTTACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGACTTT
385 ATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * * * *
70661 TTGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGCCAAGCACAAAAAAATTCAGCTAA
450 TGGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* *
70726 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTTAGACACTTTAAT
515 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
70791 GGCTACTGGCAGCAAACCTGTAAAA-CTCAAATGCTCTTTAAGGGGGTGTGAATTCTCGAGGTTT
580 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * *
70855 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACCAGCACCCACCGCACATCATGTGTGCACA
645 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * * **
70920 CCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTAAGATTTCACCGATGATGCTCCG
710 -CCCCCCGGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAG-GTTCTCCGGCGATGCTCCG
* * * *
70985 GCGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATTTGCTGCCA
773 ACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCA
* * *
71050 CAATCCTCGGTCCAATCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
838 CAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * **
71105 GGGAATGAACTCCGTTTTCCTAAGTCAAACCACGAAACGAATGTGCAGGCGCTCAGCCGGCCAGA
1 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCA-G-GCT----CGGCCAGA
* * * ** * * * *
71170 GGGGCGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTATGTGCTATCGATGCTGTTGCTG
60 GGGGCAGGATGCGCAAGCCAGAGATCGACCGGGTCCCCCTCTGCGTGCTCTCGATCCTGCTGCCG
* *
71235 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
125 CAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
71300 ACGAACGGGCGGGCGGGCAGGCAGGTGAGCACTATGTCGGCTAGAGAGACGGGATGCGCAAGCCG
190 AC-AA---GCGGGCGGGCGGGC--G-G-GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
*
71365 T-GATCGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
247 TGGATCGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
* *
71429 TATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACC
312 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
71494 CGTTTTCTATTTTCCACGATTTTTGAAACTTTTTACGGTTTGGGAATTTTTTAAAATTTTTT-GG
377 CGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGG-ATTTTTTAAAATTTTTTCGG
* *
71558 AAGGAGTTTTGGCCCCAAACTTGGAAGATGTGATCCTTGTATCTTTGTTGGCATGCACAAAAAAA
441 AAGGAGTTTTGGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
71623 TTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
506 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
71688 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTC
571 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
71753 TCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
636 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * *
71818 GTGCGCGCACCCCCCGGCCCCCCCAATCATCGGAACCCCAATCCCGTCGGTCAGGTTATTCGGTG
701 GTGCGCACACCCCCCGG-CCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCG
* * * * *
71883 ATGCTTCGATGATGGTGCCCCGACGAAGAGAAATATGGCACCAGCACATGCCCGGGCCCAGCATG
765 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* *** *
71948 TGCTGTCATAA-CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
830 TGCTGTCACAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * *
72010 AGGAATGAACTCTGTATGCCTAAATCAACCCACGAAACGAGCGTG-AGGCT-GGCCAGAGGGGCG
1 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCTCGGCCAGAGGGGCA
* * *
72073 GGATGCGCTAGCCAGAGATCGGCCGAGTCCCCCTCTGCGTGCTGCT-GATCCTGCTGCCGCAACC
66 GGATGCGCAAGCCAGAGATCGACCGGGTCCCCCTCTGCGTGCT-CTCGATCCTGCTGCCGCAACC
** * * * * * *
72137 CTTGGTC-CAGTTTAATCTTAGATTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-G
130 CTCAGTCTGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAA
* * ** * * * *
72200 GACGGGTGGGCGGGCGGGCACTACGCCGGTTAGAGAGGCGGGATACGTAAGCCGTGGATTGACAG
194 G-CGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGACAG
*
72265 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
258 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTA
*
72330 AATTCATACAATGGTCCCTTATGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
323 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* *
72395 TTTCATGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGG
388 TTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
*
72459 CCCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAA
453 CCCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * * *
72524 CTCAAAGCGTACAATATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
518 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * * *
72589 TACTGGAAGCAAACCTGTAAAATATCGAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGAT
583 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
72654 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC
648 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * *
72718 CCCGGCCCCCCCGATCGCCGGAGCCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCCCCGACGA
713 CCCGG-CCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGA
* * * * *
72783 TTGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCAAGCATGTGCTG-CTGCAA
777 TGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC-ACAA
** ** * *
72847 CAATCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCGGTATGCTTAGACT
841 CCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * *
72899 AGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGATGCTCAGCCAGCCAGA
1 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC--AGGCTC-G---GCCAGA
*
72964 GGGGCGGGATGCGCAAGCC
60 GGGGCAGGATGCGCAAGCC
72983 GTGGATTGAC
Statistics
Matches: 3192, Mismatches: 357, Indels: 190
0.85 0.10 0.05
Matches are distributed among these distances:
875 153 0.05
876 253 0.08
877 209 0.07
878 1 0.00
879 1 0.00
880 5 0.00
881 93 0.03
882 35 0.01
883 346 0.11
884 359 0.11
885 8 0.00
886 4 0.00
887 64 0.02
888 112 0.04
889 395 0.12
890 171 0.05
891 8 0.00
892 14 0.00
893 16 0.01
894 6 0.00
895 2 0.00
896 1 0.00
897 144 0.05
898 5 0.00
899 61 0.02
900 6 0.00
901 37 0.01
902 7 0.00
903 15 0.00
904 1 0.00
905 83 0.03
906 396 0.12
907 181 0.06
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (892 bp):
GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCTCGGCCAGAGGGGCA
GGATGCGCAAGCCAGAGATCGACCGGGTCCCCCTCTGCGTGCTCTCGATCCTGCTGCCGCAACCC
TCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGC
GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGACAGGGT
GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAT
TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
CACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
CAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
GGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGT
GCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTC
GGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
Found at i:72894 original size:26 final size:26
Alignment explanation
Indices: 72865--72917 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
72855 CCGGTTCGAT
* *
72865 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
72891 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
72917 C
1 C
72918 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:73632 original size:26 final size:26
Alignment explanation
Indices: 73594--73646 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
73584 CCGGTTCGAT
*
73594 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTAGGAATGAACTCAGTATG
*
73620 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCAGTATG
73646 C
1 C
73647 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCAGTATG
Found at i:74518 original size:26 final size:26
Alignment explanation
Indices: 74489--74541 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
74479 CCAGTCCGAT
74489 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
74515 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
74541 C
1 C
74542 CTAAGTGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:75196 original size:907 final size:892
Alignment explanation
Indices: 72894--75421 Score: 3743
Period size: 907 Copynumber: 2.8 Consensus size: 892
72884 CGGTATGCTT
* * * * **
72894 AGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC-GTGC-GG-ATG--CT-C
1 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAG-GCGGGCGGGCACTAC
* * * *
72953 AGCC-AGCCAGAGGGGCGGGATGCGCAAGCCGTGGATTGACAGGGTGGTAGGTGGGTTTAGGCAC
65 A-CCGA-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*** *
73017 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAT
128 ATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
73082 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTT
193 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTT
* * *
73147 TACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGACTTTTCGACCCAAACTTGGTAGACGTGAT
258 TACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTCGCCCCAAACTTGGTAGACATGAT
* *
73212 CCTTGTATTTTTTTTGGCAAGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
323 CCTTGTATTTTTTTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
73277 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
388 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
73342 -CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
453 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * *
73406 GGGCCAAGTACCAGCACCAATCGCACATCATGTGCGCACA-CCCCCGGCCCCCCGATCG-CCGGA
518 GGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGGA
* ** * * *
73469 GCCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCCCCGACGATTGTGCCCCGACGAAGAAAAAT
583 -CCCCAATGCCG-CGGTCAGGTTCTCCGGCGATGCTTCGGCGATGGTGCCCCGGCGAAGAAAAAT
* * * * *
73534 GCGGCACCAGCACATGCCTGAGCCAAGCATGTGCTGCTGCAACACTCGGTCCGGTTCGATCTTAG
646 ACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAAC-CTCGGTCCGGTCCGATCTTAG
* **
73599 ACTGGGAATGAACTCAGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
710 ACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAA
* ** *
73664 ACGAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGATCC
775 ACGAGCGTACGGGCACTCAGCCAGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCAGATCC
* *
73729 CCCTCTATGTGCTACCGATCCTACTATCACAACCCTCAGTCCAGTCTGATCTC
840 CCCTATACGTGCTACCGATCCTACTATCACAACCCTCAGTCCAGTCTGATCTC
**
73782 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCACTATG
1 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCACTACA
** * *
73847 TTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATC
66 CCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
73912 TTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
131 TTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * *
73977 TTCACGTGAAGTTTAATGGCAAGACGACCCATTTTCTATTTTTCACGATTTTCAAAACTTTTTAT
196 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAC
* * *
74042 GATTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA-AGTGATCC
261 GGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTCGCCCCAAACTTGGTAGACA-TGATCC
** * * *
74106 TTGTACCTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTAA
325 TTGTATTTTTTTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
74171 CCATTTGAAAAAAGTGTCCCCTTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
390 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
74236 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTCTGATGAGGGATAGGGGGCCAATATAAAG
455 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
74301 GCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCTCCGGCCCCCCGATCGTCGGGAC
520 GCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCC-CCGGCCCCCCGATCGTCGGGAC
* * * *
74366 CCCAATGCCGTCGATCAGGTTCTCCGACGATGCTTCGGCGATGGTGCCCTGGTGAAGAAAAATAC
584 CCCAATGCCG-CGGTCAGGTTCTCCGGCGATGCTTCGGCGATGGTGCCCCGGCGAAGAAAAATAC
* * *
74431 GACACCAGCACATGCCCGAGCCCAGGATGTGCTGCTGCAATCCTCAGTCCAGTCCGATCTTAGAC
648 GACACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAA-CCTCGGTCCGGTCCGATCTTAGAC
* *
74496 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACAAAAC
712 TGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAAC
* * **
74561 GAGCTTACGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGATCAGATCCCC
777 GAGCGTACGGGCACTCAGCCAGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCAGATCCCC
* * *
74626 CTATGCGTGCTACCGATCCTGCTATCACAACCCTCAGTCC-GATCTGATCTT
842 CTATACGTGCTACCGATCCTACTATCACAACCCTCAGTCCAG-TCTGATCTC
*
74677 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACAAGCAGACGAGCGGGCGGGCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-AG-C-A-------GGCGG
*
74742 GCGGGCACTACACCGACCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
54 GCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
74807 TTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
119 TTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
74872 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAATCGTTTTCTATTTTTCACGATTTTC
184 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
* * *
74937 AAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGATGGAGTTTTTCGCCCCAAACTTGG
249 AAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAG-TTTTCGCCCCAAACTTGG
*
75002 TAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTTCACCTAAAAA-TCGAAGTGTAC
313 TAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTAC
**
75066 AAGATTTTGTGACCATTTGAAAATGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
378 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
75131 ACCTGTAAAATCTCAAATCCTCTTCAAGGGGCTGTGAGTTCTCGAGGTTTGATGAGGGTTAGGGG
443 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
75196 GCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCCCTGGCCCCCCC
508 GCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGG-CCCCCC
* * * * *
75261 GATCGTCGGAACCCCAATACCGCAGGTTAGGTTCTCCGGCGATGCTTTGGCGATGTTGCCCCGGC
572 GATCGTCGGGACCCCAATGCCGC-GGTCAGGTTCTCCGGCGATGCTTCGGCGATGGTGCCCCGGC
* * ** * *
75326 GAAGAAAAA-AGTGACACCAGCACATGCCCGAGCCCAGTATGTGCTGCCACAACCCTTGGTCTGG
636 GAAGAAAAATA-CGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAA-CCTCGGTCCGG
75390 TCCGATCTTAGACTGGGAATGAACTCCGTATG
699 TCCGATCTTAGACTGGGAATGAACTCCGTATG
75422 GCTAAGCCAA
Statistics
Matches: 1472, Mismatches: 137, Indels: 43
0.89 0.08 0.03
Matches are distributed among these distances:
888 45 0.03
889 3 0.00
890 1 0.00
892 356 0.24
893 99 0.07
894 4 0.00
895 328 0.22
896 5 0.00
897 1 0.00
898 2 0.00
899 1 0.00
900 1 0.00
906 5 0.00
907 556 0.38
908 64 0.04
909 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCACTACA
CCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAC
GGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTCGCCCCAAACTTGGTAGACATGATCCT
TGTATTTTTTTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGGACCC
CAATGCCGCGGTCAGGTTCTCCGGCGATGCTTCGGCGATGGTGCCCCGGCGAAGAAAAATACGAC
ACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCTCGGTCCGGTCCGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGC
GTACGGGCACTCAGCCAGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCAGATCCCCCTAT
ACGTGCTACCGATCCTACTATCACAACCCTCAGTCCAGTCTGATCTC
Found at i:77033 original size:26 final size:26
Alignment explanation
Indices: 76995--77047 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
76985 CTGGTTCGAT
* *
76995 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
77021 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
77047 C
1 C
77048 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:77918 original size:26 final size:26
Alignment explanation
Indices: 77889--77941 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
77879 CCGGTCTGAT
*
77889 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
77915 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
77941 C
1 C
77942 CTAGGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:78501 original size:903 final size:894
Alignment explanation
Indices: 75388--78808 Score: 4836
Period size: 894 Copynumber: 3.8 Consensus size: 894
75378 CCCTTGGTCT
* *
75388 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGGCTAAGCCAACCAACGAAACGAGCGGGCGGA
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGA
*
75453 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
75518 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
75583 TCCCTTAAGCCATCCCGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * * * *
75648 AAACTTTTTACGTTTCAGGATTTTTTTAAATTTTTTCGGAAGGATTTTTAGCCCCAAACTTGGTA
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
75713 GACATGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAA
326 GACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
75778 GATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCGACTGGCAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
75842 TTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
** * * *
75907 CGTATAAGGGCCAAGTACCAACACCCATCCCACATCATGTGCACACACCCTCCCGACCCCCCCGA
521 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGACCCCCCCGA
* * *
75972 TCA-TCGGAACCCCAATG-CTGCCAGTCAGGTTCTCTGGCGATGCTTCGACGATGGTGCCCTGGT
585 TCAGCCGGAACCCCAATGTC-GCCAGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCC-CGT
* * *
76035 GAAGAAAAATGCAGCACTAGCATATGCCCGAGCCTAGCATGTGCTG-CTGCAACCCT-CGATCCG
648 GAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCTGCAACCCTCCG-TCCG
* * * *
76098 GTCCGATCTTTGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTTTGCCTAAG
712 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
76163 TCAGCCCACGAAATGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGTAACCCGGGGA
777 TCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAA-CCGGGGA
* * * * * * * *
76228 TTGGCTGGGTCCCCCTCTGCGTGTTGCCGATCTTGTTGTCGCAACCCTCTGTCT
841 TCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGTCGCAACCCTCAGTCC
* * * *
76282 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACAAGCGGG-TGA
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGA
* *
76346 ---GCACTTCGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
76408 TTAGGCACATCTTCATATTTCTGCATGTCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
76473 TCCTTTAAGCCTTCACGTGAA-TTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * * *
76537 AAACTTTTTGCGGTTTGGGATTTTTTTAAATTTTTT-AGGAAGGCA-TTTTGGCCTCAAACTTAG
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCA-GAAGG-AGTTTTGGCCCCAAACTTGG
* * * **
76600 TAGGCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTAAAGTGTAC
324 TAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
76665 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
389 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
76730 ACCTGTAAAATATCGAATGCTCTTTAAGGCGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
454 ACCTGTAAAATCTCAAATGCTCTTTAAGG-GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
76795 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
518 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCC
* * * * * * * * *
76860 GAT-TGCCGGAGCCCCAATGCCGCCGGTCAAGTTCTCCGGTGATGCCCCGACGATTGTGCCCCGA
583 GATCAGCCGGAACCCCAATGTCGCCAGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCG-
* * * * * * * *
76924 CGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCAAGCATGTGCT-ACTGCAACACTCGGTCTG
647 TGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCTGCAACCCTCCGTCCG
* *
76988 GT-TCGATCTTAGACTGGGAATGAACTCGGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAA
712 GTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * **
77052 GTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCACAACCGGGGA
776 GTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAACCGGGGA
** * * * * * * *
77117 TCGATCGGATCCCCCTCTATGTGCTACCGATCCTACTATCACAACCCTTAGTCC
841 TCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGTCGCAACCCTCAGTCC
* * * * *
77171 AGTCTGATCTCAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGG
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGA
* * ** * * *
77236 CGGGTACTATGTTGGCCAGAGAGACGAGATGCGCAAGCCGTAGATCGATAGGGTGGTAAGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
77301 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
77366 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * *
77431 AAAATTTTTGCGGTTCGGGGTTTTTGAAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAACTTGGT
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGT
* *
77495 AGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACA
325 AGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
** *
77560 AGATTTTGTCTCCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
77625 CCTGTAAAATCTGAAATGCTCTTTAAAGGGGTGTTAGTTCTCGAGGTTTGATGAGGGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
77690 CCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCAG
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCG
*
77755 ATCAG-CGGAACCCCAATGTCGCCAGTCAGGTTCTCTGGCGATGCTCCGATGATGGTGCCCCGTC
584 ATCAGCCGGAACCCCAATGTCGCCAGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGT-
* * * *
77819 GAAGAAAAATGCGGCCCCAGCACATGCCCGAGCCCAGTATGTGCTGTC-GTAACCCTCCGTCCGG
648 GAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCTGCAACCCTCCGTCCGG
* *
77883 TCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAGGT
713 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* ** * * *
77948 CAACCCATGAAACGAGCGTGCGGGCGCCCAATCGGCCAGAGAGGCGGGATGCGTAAGTCGAGGAT
778 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAA-CCGGGGAT
* * *
78013 CGGCCGGGCCCCCCTCTACATGCTGTCGATCCTGCTGTCGCAACCCTCAGTCC
842 CGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGTCGCAACCCTCAGTCC
* *
78066 GGTCTGATCTTAGACTGGGAGTGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGG
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC------G
* * * * *
78131 TAGGCGGACGGGCACTACGCCGTCTAGAGAGACGGCATGCGCAAGCCGTGGATCCATAGGGTCGT
60 --GGCGGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * * *
78196 ACGTGGGTTTAGGCACATCTACATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
123 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
78261 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
188 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* *
78326 GATTTTTCAAACTTTCTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
253 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
* *
78391 ACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGGTAAAAATTCGAA
318 ACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
78456 GTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
383 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
78521 CAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGACGAGGGA
448 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
78586 TAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
512 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGAC
* *
78651 CCCCACCGATC-GCCGGAA-CCCAA-GT-GCC-G-CCGG---TC-GG-GCT-CTCC-AGCGATGG
577 CCCC-CCGATCAGCCGGAACCCCAATGTCGCCAGTCAGGTTCTCTGGCGATGCTCCGA-CGATGG
* * *
78703 TGCCCCGGTGAAGAAAAATACAGAACTAGCACATGCCCGAGCCCAGCATGTGCTGTC-GCAACCC
640 TGCCCC-GTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCTGCAACCC
* * * *
78767 TCAGCCCAGTCTGATCTTAGACTGGGAATGAACTCCGCATGC
704 TCCGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
78809 CTAAGACAAC
Statistics
Matches: 2247, Mismatches: 242, Indels: 77
0.88 0.09 0.03
Matches are distributed among these distances:
889 271 0.12
890 428 0.19
891 84 0.04
892 1 0.00
893 239 0.11
894 604 0.27
895 111 0.05
896 2 0.00
899 3 0.00
900 1 0.00
901 3 0.00
902 4 0.00
903 485 0.22
904 11 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (894 bp):
GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGA
CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
GACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGAT
CAGCCGGAACCCCAATGTCGCCAGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGTGAA
GAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCTGCAACCCTCCGTCCGGTCT
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAACCGGGGATCGGC
CGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGTCGCAACCCTCAGTCC
Found at i:81082 original size:16 final size:17
Alignment explanation
Indices: 81061--81093 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
81051 TATTGATTTC
81061 AAATAG-ATAATTATTG
1 AAATAGCATAATTATTG
81077 AAATAGCCATAATTATT
1 AAATAG-CATAATTATT
81094 TCAACTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.36
Consensus pattern (17 bp):
AAATAGCATAATTATTG
Found at i:81289 original size:176 final size:180
Alignment explanation
Indices: 81019--81440 Score: 496
Period size: 180 Copynumber: 2.4 Consensus size: 180
81009 ATGATAAAAA
* * ** * * * *
81019 AAACAATTATTATATGACCGAACAAAAGGTAATATTGATTTCAAATAGATAATTATTGAAATAGC
1 AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAATAGC
* * * * * * *
81084 CATAATTATTTCAACTAATTCAGTAAACAAAATCA-TTTTTTAAA-TC-ACTTATTAATTTTTTA
66 CATAACTATTTAAACTAATTAAATAAACAAAATAATTTTTTTAAACTCTACTCATTAATTTTTGA
* *
81146 AATATTAATAAATTAC-TATTATTTTAT-TTCGAATAAGCTTGTATGAATTG
131 AATATTAAGAAATT-CGTATTATTTTATCTT-GAATAAGCTTGTATGAACTG
*
81196 AAACAATTGTTTTATGACAAAACAAAAGATCATAATGATTTTAAATAGATAA-TATTCAAATAGC
1 AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAATAGC
* ** * *
81260 CATAACTATTTAAATTTGTTAAATAAACAAATTAATTTTTTTAAACTCTTGCTCATTAATTTTTG
66 CATAACTATTTAAACTAATTAAATAAACAAAATAATTTTTTTAAACTC-TACTCATTAATTTTTG
* *
81325 AAATATTAAGAAATTCGTATTATTTTATCTTGAATTAGCTTTTATGAACTG
130 AAATATTAAGAAATTCGTATTATTTTATCTTGAATAAGCTTGTATGAACTG
* * * * *
81376 AAGCAATTGTTTTTTTGTCAAAACAAAAGGTCATAATGATTTTAAATAAATAATTGTTCAAATAG
1 AAACAATTG-TTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAATAG
81441 TCACGACTAT
Statistics
Matches: 206, Mismatches: 31, Indels: 11
0.83 0.12 0.04
Matches are distributed among these distances:
176 37 0.18
177 53 0.26
178 2 0.01
179 1 0.00
180 62 0.30
181 41 0.20
182 10 0.05
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (180 bp):
AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAATAGC
CATAACTATTTAAACTAATTAAATAAACAAAATAATTTTTTTAAACTCTACTCATTAATTTTTGA
AATATTAAGAAATTCGTATTATTTTATCTTGAATAAGCTTGTATGAACTG
Found at i:81541 original size:22 final size:22
Alignment explanation
Indices: 81503--81544 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
81493 GAATGTTAAT
*
81503 AATTAAAAGTTTTAAATATTTA
1 AATTAAAAGTTTAAAATATTTA
81525 AATTAAAA-TATTAAAATATT
1 AATTAAAAGT-TTAAAATATT
81545 ATTAGTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 1 0.06
22 17 0.94
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
AATTAAAAGTTTAAAATATTTA
Found at i:82254 original size:173 final size:176
Alignment explanation
Indices: 81822--82256 Score: 452
Period size: 173 Copynumber: 2.5 Consensus size: 176
81812 CTATTTGACC
* * **
81822 AATTGTCTATTTAAAATTGTTATGACCTTTCG-TTTGTCATAAAACAATTGTTTT-AATTCATAC
1 AATTATCTATTTCAAATCATTATGACCTTTCGTTTTGTCATAAAACAATTGTTTTCAA--CATAC
*
81885 AAGCTTATTCAAAATAAAATAAAACTAATTTATTAATATTCCAAAAATTAATAACTAAGTGATTT
64 AAGCTTATT--AAATAAAATAAAACTAATTTATTAATATTCCAAAAATT-ATAACTAAGAGATTT
* * **** * * * * *
81950 AAAAAGTTAATTTTTTTATCGAATCAGTTCAAATAGTTATGTCCATTTGAAT
126 AAAAAATAAATCAGCTTACCAAATCAGATCAAATAATTATGGCCA-TTGAAT
* * * * * ** *
82002 AGTTATCTATTTCAAATCGTTATGACCTTTTGTTTTTTCATAAAATAATTG-TTTCAGTATAAAA
1 AATTATCTATTTCAAATCATTATGACCTTTCGTTTTGTCATAAAACAATTGTTTTCAACATACAA
* * * *
82066 GCTTATGCAAAATAAAATAATACTATTTTATTAATATTTCAAAAA-T-TAA-TAAGAGATTTAAA
66 GCTTAT--TAAATAAAATAAAACTAATTTATTAATATTCCAAAAATTATAACTAAGAGATTTAAA
* *
82128 AAATAAATCAGCTTGCCAAATTAGATCAAATAATTATGGCC-TTGAAT
129 AAATAAATCAGCTTACCAAATCAGATCAAATAATTATGGCCATTGAAT
* *
82175 AATTATCTATTTCCAATCATTATTACCTTTCGTTTTGTCATAAAACAATTGTTTTCCAACATACA
1 AATTATCTATTTCAAATCATTATGACCTTTCGTTTTGTCATAAAACAATTGTTTT-CAACATACA
82240 AGCTTATTAAATAAAAT
65 AGCTTATTAAATAAAAT
82257 TGTTATTACC
Statistics
Matches: 210, Mismatches: 39, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
173 59 0.28
174 3 0.01
175 53 0.25
176 3 0.01
178 1 0.00
179 44 0.21
180 30 0.14
181 17 0.08
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (176 bp):
AATTATCTATTTCAAATCATTATGACCTTTCGTTTTGTCATAAAACAATTGTTTTCAACATACAA
GCTTATTAAATAAAATAAAACTAATTTATTAATATTCCAAAAATTATAACTAAGAGATTTAAAAA
ATAAATCAGCTTACCAAATCAGATCAAATAATTATGGCCATTGAAT
Found at i:82892 original size:16 final size:18
Alignment explanation
Indices: 82861--82901 Score: 59
Period size: 16 Copynumber: 2.4 Consensus size: 18
82851 CACAGTTATT
82861 AATTATTAATTAAAAATA
1 AATTATTAATTAAAAATA
82879 AATTA-TAA-TAAAAATA
1 AATTATTAATTAAAAATA
*
82895 AACTATT
1 AATTATT
82902 TGTTATGTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 12 0.57
17 4 0.19
18 5 0.24
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (18 bp):
AATTATTAATTAAAAATA
Found at i:83826 original size:17 final size:18
Alignment explanation
Indices: 83795--83836 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
83785 CACAATTATT
*
83795 AATTATTAATTAAAAATA
1 AATTATTAATAAAAAATA
83813 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
*
83830 AACTATT
1 AATTATT
83837 TGTTATTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:83933 original size:20 final size:19
Alignment explanation
Indices: 83908--83947 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
83898 TTCGTAATTA
83908 ATAAATAATTAAAAATTAAT
1 ATAAATAA-TAAAAATTAAT
*
83928 ATAAATCATAAAAATTAAT
1 ATAAATAATAAAAATTAAT
83947 A
1 A
83948 ATTATATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (19 bp):
ATAAATAATAAAAATTAAT
Found at i:85608 original size:20 final size:19
Alignment explanation
Indices: 85583--85622 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
85573 TTCCTAATTA
85583 ATAAATAATTAAAAAGTAAT
1 ATAAATAA-TAAAAAGTAAT
* *
85603 ATAAATCATAAAAATTAAT
1 ATAAATAATAAAAAGTAAT
85622 A
1 A
85623 ATTATATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (19 bp):
ATAAATAATAAAAAGTAAT
Found at i:85811 original size:17 final size:16
Alignment explanation
Indices: 85771--85820 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 16
85761 ATCTATACAG
85771 TTATAATTAA-TTTAA
1 TTATAATTAATTTTAA
85786 TTA-AA-TAATTTTAA
1 TTATAATTAATTTTAA
85800 TTATCAATTAATTTATAA
1 TTAT-AATTAATTT-TAA
85818 TTA
1 TTA
85821 ATAAAAACTA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 3 0.10
14 10 0.33
15 3 0.10
16 2 0.07
17 6 0.20
18 6 0.20
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
TTATAATTAATTTTAA
Found at i:86841 original size:17 final size:18
Alignment explanation
Indices: 86810--86851 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
86800 CACAGTTATT
*
86810 AATTATTAATTAAAAATA
1 AATTATTAATAAAAAATA
86828 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
*
86845 AACTATT
1 AATTATT
86852 TGTTATGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:87765 original size:17 final size:18
Alignment explanation
Indices: 87739--87780 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
87729 CAATTAACAT
*
87739 AATTATTAATTAAAAATA
1 AATTATTAATAAAAAATA
87757 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
*
87774 AACTATT
1 AATTATT
87781 TGTTATGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:87877 original size:20 final size:19
Alignment explanation
Indices: 87852--87891 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
87842 TTCATAATTA
87852 ATAAATAATTAAAAATTAAT
1 ATAAATAA-TAAAAATTAAT
*
87872 ATAAATGATAAAAATTAAT
1 ATAAATAATAAAAATTAAT
87891 A
1 A
87892 ATTATATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (19 bp):
ATAAATAATAAAAATTAAT
Found at i:88996 original size:16 final size:17
Alignment explanation
Indices: 88975--89007 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
88965 TATTGATTTC
88975 AAATAG-ATAATTATTG
1 AAATAGCATAATTATTG
88991 AAATAGCCATAATTATT
1 AAATAG-CATAATTATT
89008 TGAACTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.36
Consensus pattern (17 bp):
AAATAGCATAATTATTG
Found at i:89320 original size:180 final size:182
Alignment explanation
Indices: 89069--89673 Score: 523
Period size: 180 Copynumber: 3.4 Consensus size: 182
89059 AAATTTTAAT
* * * *
89069 AAATAATTATGACCTTTTGTTTTGACAAAAAAACAATTGTTTCAGTTCATAAAAGCTTATCCAAG
1 AAATCATTATGACCTTTTGTTTTG-TAATAAAACAATTGTTTCA-TTCATAAAAGCTTATTCAA-
* *
89134 ATAAAATAATACTAATTTCTTAATATTTCAAAAATTAATTAGC-AAGAG-TTTAAAAAAATAAAT
63 ATAAAATAATACTAATTTATTAATATTTCAAAAATTAATTAACTAAGAGATTTAAAAAAATAAAT
** * * * *
89197 TTGTTTATTTAA-CAAATTTAAATAGTTATGGCTATTTGAATA-TAATCTATTT-A
128 TTGTTTATCGAATC-AATTCAAACAGTCATGGCCATTTGAATAGTAATCTATTTCA
* * *
89250 AAATCATTATGATCTTTTGTTTTGTAATAAAACAATTATTTCATTTCATACAAGCTTATTCGAAA
1 AAATCATTATGACCTTTTGTTTTGTAATAAAACAATTGTTTCA-TTCATAAAAGCTTATTC-AAA
* * * * *
89315 TAAAATAATAGTAATTTATTAATATTCCAAAAATTAA-TAACTAAGTGATTTAAAAAAGTTAATT
64 TAAAATAATACTAATTTATTAATATTTCAAAAATTAATTAACTAAGAGATTTAAAAAAATAAATT
* * * *
89379 TTTTTATCGAATCAGTTCAAACAGTCATGTCCATTTGAATAGTTATCTATTTCA
129 TGTTTATCGAATCAATTCAAACAGTCATGGCCATTTGAATAGTAATCTATTTCA
* * * * * * *
89433 AAATCGTTATGACCTTTTTGTTTTTTTCATAAAATAAATGTTTCAGT-ATAAAAGCTTATGCAAA
1 AAATCATTATGACC-TTTTG-TTTTGTAATAAAACAATTGTTTCATTCATAAAAGCTTATTCAAA
*
89497 TAAAATAATACTACTTTATTAATATTTC--AAA--AATTAA-TAAGAGATTT--AAAAATAAATT
64 TAAAATAATACTAATTTATTAATATTTCAAAAATTAATTAACTAAGAGATTTAAAAAAATAAATT
* * ** * * * * * * *
89555 AGCTTGCCAAAT-TATATCAAATAATTATGGCC--TTGAATAATTATCTATTTC-
129 TGTTTATCGAATCAAT-TCAAACAGTCATGGCCATTTGAATAGTAATCTATTTCA
* * * * * *
89606 CAATCATTATTACC-TTCGTTTTGTCATAAAACAATTGTTTTCCA-ACATACAAGCTTATT-AAA
1 AAATCATTATGACCTTTTGTTTTGTAATAAAACAATTG-TTT-CATTCATAAAAGCTTATTCAAA
89668 TAAAAT
64 TAAAAT
89674 TGTTATTACC
Statistics
Matches: 347, Mismatches: 64, Indels: 36
0.78 0.14 0.08
Matches are distributed among these distances:
170 16 0.05
171 15 0.04
172 13 0.04
173 11 0.03
174 18 0.05
175 1 0.00
176 27 0.08
178 11 0.03
179 6 0.02
180 73 0.21
181 68 0.20
182 38 0.11
183 25 0.07
184 6 0.02
185 19 0.05
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40
Consensus pattern (182 bp):
AAATCATTATGACCTTTTGTTTTGTAATAAAACAATTGTTTCATTCATAAAAGCTTATTCAAATA
AAATAATACTAATTTATTAATATTTCAAAAATTAATTAACTAAGAGATTTAAAAAAATAAATTTG
TTTATCGAATCAATTCAAACAGTCATGGCCATTTGAATAGTAATCTATTTCA
Found at i:89504 original size:182 final size:177
Alignment explanation
Indices: 89069--89548 Score: 509
Period size: 181 Copynumber: 2.7 Consensus size: 177
89059 AAATTTTAAT
* * * *
89069 AAATAATTATGACCTTTTGTTTTGACAAAAAAACAATTGTTTCAGTTCATAAAAGCTTATCCAAG
1 AAATCATTATGACCTTTTGTTTTG-TAATAAAACAAATGTTTCAG-TCATAAAAGCTTATCCAA-
* *
89134 ATAAAATAATACTAATTTCTTAATATTTCAAAAATTAATTAGCAAGAGTTTAAAAAAATAAATTT
63 ATAAAATAATACTAATTTATTAATATTTCAAAAATTAA-TAACAAGAGTTTAAAAAAATAAATTT
** * * * *
89199 GTTTATTTAACAAATTTAAATAGTTATGGCTATTTGAATATAATCTATTTA
127 GTTTATCGAACAAATTCAAACAGTCATGGCCATTTGAATATAATCTATTTA
* * * * * *
89250 AAATCATTATGATCTTTTGTTTTGTAATAAAACAATTATTTCATTTCATACAAGCTTATTCGAAA
1 AAATCATTATGACCTTTTGTTTTGTAATAAAACAAATGTTTCA-GTCATAAAAGCTTA-TCCAAA
* * * * *
89315 TAAAATAATAGTAATTTATTAATATTCCAAAAATTAATAACTAAGTGATTTAAAAAAGTTAATTT
64 TAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAC-AAGAG-TTTAAAAAAATAAATTT
* * * *
89380 TTTTATCGAATC-AGTTCAAACAGTCATGTCCATTTGAATAGTTATCTATTTCA
127 GTTTATCGAA-CAAATTCAAACAGTCATGGCCATTTGAATA-TAATCTATTT-A
* * * * *
89433 AAATCGTTATGACCTTTTTGTTTTTTTCATAAAATAAATGTTTCAGT-ATAAAAGCTTATGCAAA
1 AAATCATTATGACC-TTTTG-TTTTGTAATAAAACAAATGTTTCAGTCATAAAAGCTTATCCAAA
* *
89497 TAAAATAATACTACTTTATTAATATTTCAAAAATTAATAA-GAGA-TTTAAAAA
64 TAAAATAATACTAATTTATTAATATTTCAAAAATTAATAACAAGAGTTTAAAAA
89549 TAAATTAGCT
Statistics
Matches: 249, Mismatches: 41, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
178 8 0.03
179 3 0.01
180 69 0.28
181 70 0.28
182 51 0.20
183 23 0.09
184 6 0.02
185 19 0.08
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (177 bp):
AAATCATTATGACCTTTTGTTTTGTAATAAAACAAATGTTTCAGTCATAAAAGCTTATCCAAATA
AAATAATACTAATTTATTAATATTTCAAAAATTAATAACAAGAGTTTAAAAAAATAAATTTGTTT
ATCGAACAAATTCAAACAGTCATGGCCATTTGAATATAATCTATTTA
Found at i:90299 original size:17 final size:18
Alignment explanation
Indices: 90268--90309 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
90258 CACAGTTATT
*
90268 AATTATTAATTAAAAATA
1 AATTATTAATAAAAAATA
90286 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
*
90303 AACTATT
1 AATTATT
90310 TGTTATGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:90755 original size:19 final size:19
Alignment explanation
Indices: 90731--90768 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
90721 TGATTTACCA
90731 AACCGGTTTAAATAATTAT
1 AACCGGTTTAAATAATTAT
*
90750 AACCGGTTTAAATAGTTAT
1 AACCGGTTTAAATAATTAT
90769 TACTATTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (19 bp):
AACCGGTTTAAATAATTAT
Found at i:90937 original size:938 final size:903
Alignment explanation
Indices: 89696--91538 Score: 2913
Period size: 938 Copynumber: 2.0 Consensus size: 903
89686 TCTTTTGTCA
89696 TAAAACAATTGATTTTCAACTTATAAACTTATTTGAAACAAATAATACTAATTTTTAATACTTCA
1 TAAAACAATTGATTTTCAACTTATAAACTTATTTGAAACAAATAATACTAATTTTTAATACTTCA
* * *
89761 GAATTAGTAAGAGATTTAAAAAATAAATTTATTTACCAACCGGTTAAAATAATTATGACACTTCA
66 GAATTAGTAAAAGATTTAAAAAATAAATTGATTTACCAACCGGTTAAAATAATTATAACACTTCA
* *
89826 AATAATTATTACTATTGAACAATTATCTATTTCAAATTATTATAAAATAAAAAGGCATATAAATA
131 AATAATTATTACTATTGAACAATTATCTATTTCAAATTATTATAAAAAAAAAAGCCATATAAATA
* * * *
89891 ATAATTATGATTTAAAACGTCAGATTTTGTTTCTTAACAATTTCGGCTTAAAAATCATTCGCACA
196 ATAATTATGATTTAAAACATCAGACTTTGTTTCTGAACAATTTCGGCTTAAAAACCATTCGCACA
*
89956 ATTATTGCACGATTTTAATTTTTCATTGTATTTCATACTTATTTGCTTTTAGATACATTTTTAGA
261 ATTATTGCACGATTTTAATTTTTCATTGTATTTCATACTTATTTGCTATTAGATACATTTTTAGA
90021 TGCTCTAAGAATGTTGAGAATAAATAATAATTATCCAATGATGGAATTTTTAGAAATTTCAAATA
326 TGCTCTAAGAATGTTGAGAATAAATAATAATTATCCAATGATGGAATTTTTAGAAATTTCAAATA
90086 TTAGTATCTTATTATTTAAAATTAAACAAAGAGAAACTTAAATTAGAATAATAATAAAATAGTTA
391 TTAGTATCTTATTATTTAAAATTAAACAAAGAGAAACTTAAATTAGAATAATAATAAAATAGTTA
*
90151 TGAATATTTGAATGTATTAACATAAAC-ATATTTATTGTTATAAATAATTTTTAATTAGCTACTT
456 TGAATATTT-AATGAATTAACAT-AACTATATTTATTGTTATAAATAATTTTTAATTAGCTACTT
*
90215 AATAAATCAAAT-A-ATATATATTTAACAAAATAGCTACAATTAACACAGTTATTAATTATTAAT
519 AATAAATCAAATAATATATATATTTAACAAAATAGCTACAATTAACACAATTATTAATTATTAAT
*
90278 TAAAAATAAATTATAATAAAAAATAAACTATTTGTTATGTGATATAATTATATTACATATTTATA
584 TAAAAATAAATTATAATAAAAAATAAACTATTTGTTATGTGATATAATTATATTACATAATTATA
* *
90343 TAAATTTATACGCTATCAAATAAATTTATTCATAATTAAAAATTAATATAAATCTTAAAAATTAA
649 TAAATTTATACGCAATCAAATAAATTTATTCATAACT---AA-TAA-AT-AA--TTAAAAATTAA
** * *
90408 TATTTAAAT-ATGTTTACCAATTAATAATTATATTTTGAATAAAAGCTTTAATTTTGTCCTGAGA
706 TA--TAAATCA----TAAAAATTAATAATTATATTATGAATAAAAGCTTTAAATTTGTCCTGAGA
90472 TCTTATATCTACTATTATCTAATTTATCATAAATAAATTTAATTCAAATTGAATTATCTAATAAA
765 TCTTATATCTACTATTATCTAATTTATCATAAAT--A---AA-T----TT-AATTATCTAAT-AA
*
90537 ATATATATATAACAATAATTAAATAAGAATATTAAATTCTTAGTTATAATCTATTCAGTTATAAT
818 A-ATATATATAACAATAATTAAATAAGAATATTAAATTCTTAGTTATAATCTATACAGTTATAAT
90602 TAATTTAATTAAATAATTTTAAT
882 TAA-TTAATTAAATAATTTTAAT
*
90625 TAAAACAATTGATTTTCAACTTATAAGCTTATTTGAAACAAAATAATACTAATTTTTTAATACTT
1 TAAAACAATTGATTTTCAACTTATAAACTTATTTGAAAC-AAATAATACTAA-TTTTTAATACTT
*
90690 CAAGAATTAGTAAAAGATTTAAAAAATAAATTGATTTACCAAACCGGTTTAAATAATTATAAC-C
64 C-AGAATTAGTAAAAGATTTAAAAAATAAATTGATTTACC-AACCGGTTAAAATAATTATAACAC
* *
90754 GGTTTAAATAGTTATTACTATTTGAACAATTATCTATTTCAAATTATTATAAATAAAAAAAAGCC
127 --TTCAAATAATTATTACTA-TTGAACAATTATCTATTTCAAATTATTAT-AA-AAAAAAAAGCC
* * *
90819 ATATAGATAATAATTGTGATTTAAAACATCAGACTTTGTTTCTGAACAATTCTGGGCTTAAAAAC
187 ATATAAATAATAATTATGATTTAAAACATCAGACTTTGTTTCTGAACAATT-TCGGCTTAAAAAC
* *
90884 CATTCGCACAATTATTGCACGATTTTAATTTTTCATTGTGTTTCATTCTTATTTGCTATTAGATA
251 CATTCGCACAATTATTGCACGATTTTAATTTTTCATTGTATTTCATACTTATTTGCTATTAGATA
* * *
90949 CATTTTTAGGTGCTCTAAGGATGTTGAGAATAAATAATAATTATCCAATGATGGAATTTTTTGAA
316 CATTTTTAGATGCTCTAAGAATGTTGAGAATAAATAATAATTATCCAATGATGGAATTTTTAGAA
* * ** *
91014 ATTTCAAATGTTAGTATCTTGTTATTTAAAATTAAACAAATTGAAACTTAAATTAGAATAATATT
381 ATTTCAAATATTAGTATCTTATTATTTAAAATTAAACAAAGAGAAACTTAAATTAGAATAATAAT
* *
91079 CAAATAGTTATGAATATTTAATGAATTGACATAACTATATTTATTGTTATAAATAATTTTTAATT
446 AAAATAGTTATGAATATTTAATGAATTAACATAACTATATTTATTGTTATAAATAATTTTTAATT
91144 AGCTACTTAATAAATCAAATAATATATATATTTAACAAAATAGCTACAATTAACACAATTATTAA
511 AGCTACTTAATAAATCAAATAATATATATATTTAACAAAATAGCTACAATTAACACAATTATTAA
91209 TTATTAATTAAAAATAAATTATAATAAAAAATAAACTATTTGTTATGTGATATAATTATATTACA
576 TTATTAATTAAAAATAAATTATAATAAAAAATAAACTATTTGTTATGTGATATAATTATATTACA
* *
91274 TAATTATATAAATTTATATGCAATCCAATAAATTTATTCATAACTAATAAATAATTAAAAATTAA
641 TAATTATATAAATTTATACGCAATCAAATAAATTTATTCATAACTAATAAATAATTAAAAATTAA
91339 TATAAATCATAAAAATTAATAATTATATTATGAATAAAAGCTTTAAATTTGTCCTGAGATCTTAT
706 TATAAATCATAAAAATTAATAATTATATTATGAATAAAAGCTTTAAATTTGTCCTGAGATCTTAT
*
91404 ATCTACTATTATCTAATTTATCATAAATAAATTTAATTATCTAATAAAATATATATAATAATAAT
771 ATCTACTATTATCTAATTTATCATAAATAAATTTAATTATCTAATAAAATATATATAACAATAAT
91469 TAAATAAGAATATTAAATTCTTAGTTATAATCTATACAGTTATAATTAATTAATTAAATAATTTT
836 TAAATAAGAATATTAAATTCTTAGTTATAATCTATACAGTTATAATTAATTAATTAAATAATTTT
91534 AAT
901 AAT
91537 TA
1 TA
91539 TCAATTAATT
Statistics
Matches: 858, Mismatches: 42, Indels: 45
0.91 0.04 0.05
Matches are distributed among these distances:
912 21 0.02
913 64 0.07
914 3 0.00
915 11 0.01
916 2 0.00
920 1 0.00
921 2 0.00
924 1 0.00
926 80 0.09
929 43 0.05
930 13 0.02
931 26 0.03
932 37 0.04
933 22 0.03
934 18 0.02
935 32 0.04
936 7 0.01
937 115 0.13
938 214 0.25
939 146 0.17
ACGTcount: A:0.44, C:0.08, G:0.07, T:0.40
Consensus pattern (903 bp):
TAAAACAATTGATTTTCAACTTATAAACTTATTTGAAACAAATAATACTAATTTTTAATACTTCA
GAATTAGTAAAAGATTTAAAAAATAAATTGATTTACCAACCGGTTAAAATAATTATAACACTTCA
AATAATTATTACTATTGAACAATTATCTATTTCAAATTATTATAAAAAAAAAAGCCATATAAATA
ATAATTATGATTTAAAACATCAGACTTTGTTTCTGAACAATTTCGGCTTAAAAACCATTCGCACA
ATTATTGCACGATTTTAATTTTTCATTGTATTTCATACTTATTTGCTATTAGATACATTTTTAGA
TGCTCTAAGAATGTTGAGAATAAATAATAATTATCCAATGATGGAATTTTTAGAAATTTCAAATA
TTAGTATCTTATTATTTAAAATTAAACAAAGAGAAACTTAAATTAGAATAATAATAAAATAGTTA
TGAATATTTAATGAATTAACATAACTATATTTATTGTTATAAATAATTTTTAATTAGCTACTTAA
TAAATCAAATAATATATATATTTAACAAAATAGCTACAATTAACACAATTATTAATTATTAATTA
AAAATAAATTATAATAAAAAATAAACTATTTGTTATGTGATATAATTATATTACATAATTATATA
AATTTATACGCAATCAAATAAATTTATTCATAACTAATAAATAATTAAAAATTAATATAAATCAT
AAAAATTAATAATTATATTATGAATAAAAGCTTTAAATTTGTCCTGAGATCTTATATCTACTATT
ATCTAATTTATCATAAATAAATTTAATTATCTAATAAAATATATATAACAATAATTAAATAAGAA
TATTAAATTCTTAGTTATAATCTATACAGTTATAATTAATTAATTAAATAATTTTAAT
Found at i:91238 original size:17 final size:18
Alignment explanation
Indices: 91207--91248 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
91197 CACAATTATT
*
91207 AATTATTAATTAAAAATA
1 AATTATTAATAAAAAATA
91225 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
*
91242 AACTATT
1 AATTATT
91249 TGTTATGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:91345 original size:20 final size:19
Alignment explanation
Indices: 91320--91359 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
91310 TTCATAACTA
91320 ATAAATAATTAAAAATTAAT
1 ATAAATAA-TAAAAATTAAT
*
91340 ATAAATCATAAAAATTAAT
1 ATAAATAATAAAAATTAAT
91359 A
1 A
91360 ATTATATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (19 bp):
ATAAATAATAAAAATTAAT
Found at i:91537 original size:18 final size:18
Alignment explanation
Indices: 91514--91558 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
91504 ACAGTTATAA
*
91514 TTAATTAATTAAATAATT
1 TTAATTAATCAAATAATT
*
91532 TTAATT-ATCAATTAATT
1 TTAATTAATCAAATAATT
91549 TATAATTAAT
1 T-TAATTAAT
91559 AAAAACTAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 10 0.43
18 11 0.48
19 2 0.09
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TTAATTAATCAAATAATT
Found at i:93027 original size:20 final size:19
Alignment explanation
Indices: 93002--93041 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
92992 TTCCTAATTA
93002 ATAAATAATTAAAAAGTAAT
1 ATAAATAA-TAAAAAGTAAT
* *
93022 ATAAATCATAAAAATTAAT
1 ATAAATAATAAAAAGTAAT
93041 A
1 A
93042 ATTATATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (19 bp):
ATAAATAATAAAAAGTAAT
Found at i:93229 original size:17 final size:16
Alignment explanation
Indices: 93189--93238 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 16
93179 ATCTATACAG
93189 TTATAATTAA-TTTAA
1 TTATAATTAATTTTAA
93204 TTA-AA-TAATTTTAA
1 TTATAATTAATTTTAA
93218 TTATCAATTAATTTATAA
1 TTAT-AATTAATTT-TAA
93236 TTA
1 TTA
93239 ATAAAAACTA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 3 0.10
14 10 0.33
15 3 0.10
16 2 0.07
17 6 0.20
18 6 0.20
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
TTATAATTAATTTTAA
Found at i:94618 original size:22 final size:22
Alignment explanation
Indices: 94580--94621 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
94570 GATTGGTAAT
*
94580 AATTAAAAGTTTTAAATATTTA
1 AATTAAAAGTTTAAAATATTTA
94602 AATTAAAA-TATTAAAATATT
1 AATTAAAAGT-TTAAAATATT
94622 ATTAGTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 1 0.06
22 17 0.94
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
AATTAAAAGTTTAAAATATTTA
Found at i:95951 original size:17 final size:18
Alignment explanation
Indices: 95920--95961 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
95910 CACAGTTATT
*
95920 AATTATTAATTAAAAATA
1 AATTATTAATAAAAAATA
95938 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
*
95955 AACTATT
1 AATTATT
95962 TGTTATGTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:96886 original size:17 final size:18
Alignment explanation
Indices: 96855--96896 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
96845 CACAATTATT
*
96855 AATTATTAATTAAAAATA
1 AATTATTAATAAAAAATA
96873 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
*
96890 AACTATT
1 AATTATT
96897 TGTTATGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:97177 original size:17 final size:16
Alignment explanation
Indices: 97137--97186 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 16
97127 ATCTATAAAG
97137 TTATAATTAA-TTTAA
1 TTATAATTAATTTTAA
97152 TTA-AA-TAATTTTAA
1 TTATAATTAATTTTAA
97166 TTATCAATTAATTTATAA
1 TTAT-AATTAATTT-TAA
97184 TTA
1 TTA
97187 ATAAAAACTA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 3 0.10
14 10 0.33
15 3 0.10
16 2 0.07
17 6 0.20
18 6 0.20
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
TTATAATTAATTTTAA
Found at i:98095 original size:16 final size:17
Alignment explanation
Indices: 98074--98106 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
98064 TATTGATTTC
98074 AAATAG-ATAATTATTG
1 AAATAGCATAATTATTG
98090 AAATAGCCATAATTATT
1 AAATAG-CATAATTATT
98107 TGAACTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.36
Consensus pattern (17 bp):
AAATAGCATAATTATTG
Found at i:98361 original size:180 final size:178
Alignment explanation
Indices: 98067--98470 Score: 490
Period size: 180 Copynumber: 2.3 Consensus size: 178
98057 ATGGTAATAT
* * * * * * *
98067 TGATTTCAAATAGATAATTATTGAAATAGCCATAATTATTTGAACTAATTCAGTAAACAAAATCA
1 TGATTTTAAATAGATAATTATTCAAATAGCCATAACTATTTAAACTAATTAAATAAACAAAATAA
* *
98132 TTTTTTAAATCACTTATTAATTTTTGAAATATTAATAAATTACTATTATTTTAT-TTCGAATAAG
66 TTTTTTAAATCACTCATTAATTTTTGAAATATTAAGAAATTACTATTATTTTATCTT-GAATAAG
98196 CTTGTATGAACTGAAACAATTG-TTTTACGACAAAACAAAAGATCATAA
130 CTTGTATGAACTGAAACAATTGTTTTTACGACAAAACAAAAGATCATAA
* ** *
98244 TGATTTTAAATAGATAA-TATTCAAATAGCCATAACTATTTAAATTTGTTAAATAAACAAATTAA
1 TGATTTTAAATAGATAATTATTCAAATAGCCATAACTATTTAAACTAATTAAATAAACAAAATAA
* ** *
98308 TTTTTTTAAACTCTTGCTCATTAATTTTTGAAATATTAAGAAATTTGTATTATTTTATCTTGGAT
66 -TTTTTTAAA-TC--ACTCATTAATTTTTGAAATATTAAGAAATTACTATTATTTTATCTTGAAT
* ** * * *
98373 AAGCTTTTATGAACTGAAACAATTGTTTTTTTGTCAAAACAGAAGGTCATAA
127 AAGCTTGTATGAACTGAAACAATTGTTTTTACGACAAAACAAAAGATCATAA
* * * * *
98425 TGATTTTAAATAAATAATTGTTCAAATAGTCACAACTATTTGAACT
1 TGATTTTAAATAGATAATTATTCAAATAGCCATAACTATTTAAACT
98471 TGATTGGTAA
Statistics
Matches: 191, Mismatches: 29, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
176 37 0.19
177 25 0.13
178 2 0.01
180 65 0.34
181 39 0.20
182 23 0.12
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (178 bp):
TGATTTTAAATAGATAATTATTCAAATAGCCATAACTATTTAAACTAATTAAATAAACAAAATAA
TTTTTTAAATCACTCATTAATTTTTGAAATATTAAGAAATTACTATTATTTTATCTTGAATAAGC
TTGTATGAACTGAAACAATTGTTTTTACGACAAAACAAAAGATCATAA
Found at i:98569 original size:22 final size:22
Alignment explanation
Indices: 98531--98572 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
98521 GAATGTTAAT
*
98531 AATTAAAAGTTTTAAATATTTA
1 AATTAAAAGTTTAAAATATTTA
98553 AATTAAAA-TATTAAAATATT
1 AATTAAAAGT-TTAAAATATT
98573 ATTTGTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 1 0.06
22 17 0.94
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
AATTAAAAGTTTAAAATATTTA
Found at i:99794 original size:17 final size:18
Alignment explanation
Indices: 99763--99804 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
99753 CGCAATTATT
*
99763 AATTATTAATTAAAAATA
1 AATTATTAATAAAAAATA
99781 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
*
99798 AACTATT
1 AATTATT
99805 TGTTATGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:99901 original size:20 final size:19
Alignment explanation
Indices: 99876--99915 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
99866 TTCATAAGTA
99876 ATAAATAATTAAAAATTAAT
1 ATAAATAA-TAAAAATTAAT
*
99896 ATAAATCATAAAAATTAAT
1 ATAAATAATAAAAATTAAT
99915 A
1 A
99916 ACTATATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (19 bp):
ATAAATAATAAAAATTAAT
Found at i:100103 original size:17 final size:16
Alignment explanation
Indices: 100063--100112 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 16
100053 ATCTATACAG
100063 TTATAATTAA-TTTAA
1 TTATAATTAATTTTAA
100078 TTA-AA-TAATTTTAA
1 TTATAATTAATTTTAA
100092 TTATCAATTAATTTATAA
1 TTAT-AATTAATTT-TAA
100110 TTA
1 TTA
100113 ATAAAAACTA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 3 0.10
14 10 0.33
15 3 0.10
16 2 0.07
17 6 0.20
18 6 0.20
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
TTATAATTAATTTTAA
Found at i:101021 original size:16 final size:17
Alignment explanation
Indices: 101000--101032 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
100990 TATTGATTTC
101000 AAATAG-ATAATTATTG
1 AAATAGAATAATTATTG
101016 AAATAGACATAATTATT
1 AAATAGA-ATAATTATT
101033 TGAACTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.52, C:0.03, G:0.09, T:0.36
Consensus pattern (17 bp):
AAATAGAATAATTATTG
Found at i:101303 original size:180 final size:177
Alignment explanation
Indices: 100422--101395 Score: 539
Period size: 180 Copynumber: 5.4 Consensus size: 177
100412 TTGTTTTACA
* * * * * * *
100422 ACAAAAAAAAAGGTCATAATTATTTGAAATAAATAATTATTCAAATA-ATTATAATTATTTGAAC
1 ACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAATAGA-CATAACTATTTAAAC
** ** * * * ** * *
100486 TGGTTAGGTAAGCAAAATTATTTGTTAAATTTCTTATTAATTTTTGAAATATTAATAAATT-CAT
65 TAATTAAATAAACAAAATAATTTTTTAAATCACTCATTAATTTTTGAAATATTAAGAAATTAC-T
* * * * * * * *
100550 TTTATTTTATTTTGAATAAGCTAGCATGAATTGAAAAAATCATTTTACG
129 ATTATTTTATTTCGAATAAGCTTGTATGAACTGAAACAATTATTTTATG
* * * * * * * *
100599 ATAAAACAAAAGATCATAACGATTTAAAATAGATAATTGTTCATATAGTCTTAACTATTTAAACT
1 ACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAATAGACATAACTATTTAAACT
** * ** ** * * * * * * ** * *
100664 GGTTCAGCAAACATATTTTATTTTTTAAATCTCTTAGTTATTAATTTTCAGAGTATTATTAGACT
66 AATTAAATAAACA-AAATAATTTTTTAAATCACTCA-TTA--ATTTTTGA-AATATTAAGAAATT
* * * *
100729 AGTATTATTTTATTTCGAATAAGCTTGTATGAACATG-CATAATTGTTTTATG
126 ACTATTATTTTATTTCGAATAAGCTTGTATGAAC-TGAAACAATTATTTTATG
* * *
100781 ACAGAACAAAAAAAGTTTACTTTTTAAATAACTGA-TTTAAACT--ATACATTCATTCAAATAGT
1 AC--AA-AACAAAAG-GT-C-------ATAA-TGATTTTAAA-TAGATA-ATT-ATTCAAATAGA
*** ** * * * * * *
100843 CATAACTATTTAAACGGGTTCGATAAATAAATTTATTTTTTAAATTTCTTACTTACTAACTTTTG
50 CATAACTATTTAAACTAATTAAATAAACAAAATAATTTTTTAAA--TC--ACTCATTAATTTTTG
** * * * * *** *
100908 AAAGGTTAATAAATTAGTGTTATTTTA-TTC--AGAAGCTTGTATGGTAAAAAAAACAATTATTA
111 AAATATTAAGAAATTACTATTATTTTATTTCGAATAAGCTTGTAT-G-AACTGAAACAATTATTT
100970 TATG
174 TATG
** * * * * * *
100974 ACCGAACAAAAGGTAATATTGATTTCAAATAGATAATTATTGAAATAGACATAATTATTTGAACT
1 ACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAATAGACATAACTATTTAAACT
* * * * * *
101039 AATTCAGTAAACAAAATCATTTTTTAAATCACTTATTAATTTTTGAAATATTAATAAATTTCTAT
66 AATTAAATAAACAAAATAATTTTTTAAATCACTCATTAATTTTTGAAATATTAAGAAATTACTAT
*
101104 TATTTTATTTCGAATAAGCTTGTATGAACTGAAACAATTGTTTTATG
131 TATTTTATTTCGAATAAGCTTGTATGAACTGAAACAATTATTTTATG
* * *
101151 ACAAAACAAAAGATCATAATGATTTTAAATAGATAA-TATTCAAATAGCCATAACTATTTAAATT
1 ACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAATAGACATAACTATTTAAACT
** * *
101215 TCTTAAATAAACAAATTAATTTTTTTAAACTCTTGCTCATTAATTTTTGAAATATTAAGAAATTA
66 AATTAAATAAACAAAATAA-TTTTTTAAA-TC--ACTCATTAATTTTTGAAATATTAAGAAATTA
* * * * *
101280 GTATTATTTTATCTT-GGATAAGCTTTTATGAACTGAAACAATTTTTTTTTG
127 CTATTATTTTAT-TTCGAATAAGCTTGTATGAACTGAAACAATTATTTTATG
* * * * * * *
101331 TCAAAACAAAAGGTCATAATGATTTTAAATAAATAATTGTTCAAATTGTCACAACTATTTGAACT
1 ACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAATAGACATAACTATTTAAACT
101396 TGATTGGTAA
Statistics
Matches: 615, Mismatches: 139, Indels: 82
0.74 0.17 0.10
Matches are distributed among these distances:
176 71 0.12
177 117 0.19
178 23 0.04
179 14 0.02
180 150 0.24
181 41 0.07
182 51 0.08
183 2 0.00
184 2 0.00
185 7 0.01
186 1 0.00
187 1 0.00
189 1 0.00
190 7 0.01
191 11 0.02
192 1 0.00
193 21 0.03
194 45 0.07
195 41 0.07
196 2 0.00
197 2 0.00
198 4 0.01
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.40
Consensus pattern (177 bp):
ACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAATAGACATAACTATTTAAACT
AATTAAATAAACAAAATAATTTTTTAAATCACTCATTAATTTTTGAAATATTAAGAAATTACTAT
TATTTTATTTCGAATAAGCTTGTATGAACTGAAACAATTATTTTATG
Found at i:103737 original size:17 final size:18
Alignment explanation
Indices: 103706--103747 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
103696 CACAATTATT
*
103706 AATTATTAATTAAAAATA
1 AATTATTAATAAAAAATA
103724 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
*
103741 AACTATT
1 AATTATT
103748 TGTTATGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:103844 original size:20 final size:18
Alignment explanation
Indices: 103819--103857 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
103809 TTCGTAAATA
103819 ATAAATAATTAAAAATTAAT
1 ATAAATAA-T-AAAATTAAT
*
103839 ATAAATCATAAAATTAAT
1 ATAAATAATAAAATTAAT
103857 A
1 A
103858 ATTATATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 10 0.56
19 1 0.06
20 7 0.39
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (18 bp):
ATAAATAATAAAATTAAT
Found at i:104046 original size:17 final size:16
Alignment explanation
Indices: 104006--104055 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 16
103996 ATCTATACAG
104006 TTATAATTAA-TTTAA
1 TTATAATTAATTTTAA
104021 TTA-AA-TAATTTTAA
1 TTATAATTAATTTTAA
104035 TTATCAATTAATTTATAA
1 TTAT-AATTAATTT-TAA
104053 TTA
1 TTA
104056 ATAAAAACTA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 3 0.10
14 10 0.33
15 3 0.10
16 2 0.07
17 6 0.20
18 6 0.20
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
TTATAATTAATTTTAA
Found at i:104962 original size:16 final size:17
Alignment explanation
Indices: 104941--104973 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
104931 TATTGATTTC
104941 AAATAG-ATAATTATTG
1 AAATAGCATAATTATTG
104957 AAATAGCCATAATTATT
1 AAATAG-CATAATTATT
104974 TGAACTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.36
Consensus pattern (17 bp):
AAATAGCATAATTATTG
Found at i:105229 original size:180 final size:178
Alignment explanation
Indices: 104919--105337 Score: 502
Period size: 180 Copynumber: 2.3 Consensus size: 178
104909 TATATGACCG
* * * * * *
104919 AACAAAAGGTAATATTGATTTCAAATAGATAATTATTGAAATAGCCATAATTATTTGAACTAATT
1 AACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAATAGCCATAACTATTTAAACTAATT
* * * * *
104984 CAGTAAACAAAATCATTTTTTAAATCACTTATTAATTTTTGAAATATTAATAAATTACTATTATT
66 AAATAAACAAAATAATTTTTTAAATCACTCATTAATTTTTGAAATATTAAGAAATTACTATTATT
*
105049 TTAT-TTCGAATAAGCTTGTATGAACTGAAACAGTTG-TTTTATGACAA
131 TTATCTT-GAATAAGCTTGTATGAACTGAAACAATTGTTTTTATGACAA
* * * **
105096 AACAAAAGATCATAATGATTTTAAATAGATAA-TATTCAAATAGCCCTAACTATTTAAATTTCTT
1 AACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAATAGCCATAACTATTTAAACTAATT
* * *
105160 AAATAAACAAATTAATTTTTTTAAACTCTTGCTCATTAATTTTTGAAATATTAAGAAATTAGTAT
66 AAATAAACAAAATAA-TTTTTTAAA-TC--ACTCATTAATTTTTGAAATATTAAGAAATTACTAT
* * * *
105225 TATTTTATCTTGGATAAGCTTTTATGAACTGAAACAATTGTTTTTTTGTCAA
127 TATTTTATCTTGAATAAGCTTGTATGAACTGAAACAATTGTTTTTATGACAA
* * * * * *
105277 AACAAAAGGTCATAATGATTTTAAATAAATAATTGTTCAAATTGTCACAACTATTTGAACT
1 AACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAATAGCCATAACTATTTAAACT
105338 TGATTGGTAA
Statistics
Matches: 202, Mismatches: 33, Indels: 9
0.83 0.14 0.04
Matches are distributed among these distances:
176 36 0.18
177 37 0.18
178 2 0.01
180 65 0.32
181 41 0.20
182 21 0.10
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (178 bp):
AACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAATAGCCATAACTATTTAAACTAATT
AAATAAACAAAATAATTTTTTAAATCACTCATTAATTTTTGAAATATTAAGAAATTACTATTATT
TTATCTTGAATAAGCTTGTATGAACTGAAACAATTGTTTTTATGACAA
Done.