Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168484.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_82, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111177
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.41
Warning! 1000 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:111 original size:56 final size:56
Alignment explanation
Indices: 1--206 Score: 310
Period size: 56 Copynumber: 3.6 Consensus size: 56
1 ATTGATACTTTCAACTTTTCCCTAAAAATATATTTTTTGAAATTTATTTTTAAGGAAA
1 ATTGATACTTTCAACTTTTCCCT-AAAA-ATATTTTTTGAAATTTATTTTTAAGGAAA
** *
59 ATTGATACTTTCAACTTTTTTC-AAAAATATTTTTTGGAAATTTATTTCTAAGGAAA
1 ATTGATACTTTCAACTTTTCCCTAAAAATATTTTTT-GAAATTTATTTTTAAGGAAA
*
115 ATTGATACTTTCAACTTTT-CCTCAAAAACT-CTTTTTGAAATTTATTTTTAAGGAAA
1 ATTGATACTTTCAACTTTTCCCT-AAAAA-TATTTTTTGAAATTTATTTTTAAGGAAA
171 ATTGATACTTTCAACTTTTCCCTAAAAATATTTTTT
1 ATTGATACTTTCAACTTTTCCCTAAAAATATTTTTT
207 TTGGAATTTT
Statistics
Matches: 135, Mismatches: 7, Indels: 14
0.87 0.04 0.09
Matches are distributed among these distances:
55 11 0.08
56 90 0.67
57 13 0.10
58 21 0.16
ACGTcount: A:0.34, C:0.12, G:0.07, T:0.47
Consensus pattern (56 bp):
ATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAATTTATTTTTAAGGAAA
Found at i:277 original size:6 final size:6
Alignment explanation
Indices: 268--312 Score: 56
Period size: 6 Copynumber: 7.5 Consensus size: 6
258 AAGTGAAAAT
* *
268 AAATAA AAATAA AAAAACA AAATAA AAAT-A AAATAA AGATAA AAA
1 AAATAA AAATAA AAATA-A AAATAA AAATAA AAATAA AAATAA AAA
313 GAATATTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
5 5 0.15
6 23 0.70
7 5 0.15
ACGTcount: A:0.82, C:0.02, G:0.02, T:0.13
Consensus pattern (6 bp):
AAATAA
Found at i:281 original size:29 final size:29
Alignment explanation
Indices: 232--312 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 29
222 TTTATTTAAA
** *
232 GAAAATAGAATAATAAA-AAAAAATGAAAGT
1 GAAAATA-AATAA-AAATAAAAAAACAAAAT
262 GAAAATAAATAAAAATAAAAAAACAAAAT
1 GAAAATAAATAAAAATAAAAAAACAAAAT
* *
291 AAAAATAAAATAAAGATAAAAA
1 GAAAAT-AAATAAAAATAAAAA
313 GAATATTAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
28 3 0.07
29 20 0.45
30 21 0.48
ACGTcount: A:0.77, C:0.01, G:0.07, T:0.15
Consensus pattern (29 bp):
GAAAATAAATAAAAATAAAAAAACAAAAT
Found at i:1334 original size:6 final size:6
Alignment explanation
Indices: 1325--1469 Score: 56
Period size: 6 Copynumber: 23.2 Consensus size: 6
1315 AGAGAAAAAA
1325 AATAAT AATAA- AATAAT AATAAT -ATAAT AATATAT ATATAACT ATATAA-
1 AATAAT AATAAT AATAAT AATAAT AATAAT AATA-AT A-ATAA-T A-ATAAT
* * *
1374 ATATAAT ACAT-AT AAATATT AACAGAA AATAAAT AAATAA- AGAT-AT
1 A-ATAAT A-ATAAT -AATAAT AATA-AT AAT-AAT -AATAAT A-ATAAT
*
1420 ACAT-AT ATTAAT ATATAAT AATAAT AATAAAT AATAA- AATACAT AA-AAT
1 A-ATAAT AATAAT A-ATAAT AATAAT AAT-AAT AATAAT AATA-AT AATAAT
1469 A
1 A
1470 CAAAAAAAGA
Statistics
Matches: 111, Mismatches: 10, Indels: 37
0.70 0.06 0.23
Matches are distributed among these distances:
5 20 0.18
6 50 0.45
7 27 0.24
8 14 0.13
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.32
Consensus pattern (6 bp):
AATAAT
Found at i:1342 original size:14 final size:14
Alignment explanation
Indices: 1320--1356 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
1310 GAAAAAGAGA
*
1320 AAAAAAATAATAAT
1 AAAATAATAATAAT
1334 AAAATAATAATAAT
1 AAAATAATAATAAT
*
1348 ATAATAATA
1 AAAATAATA
1357 TATATATAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (14 bp):
AAAATAATAATAAT
Found at i:1363 original size:14 final size:14
Alignment explanation
Indices: 1325--1392 Score: 56
Period size: 14 Copynumber: 5.0 Consensus size: 14
1315 AGAGAAAAAA
1325 AATAATA-ATA-A-
1 AATAATATATATAT
1336 AATAATA-ATAATAT
1 AATAATATAT-ATAT
1350 AATAATATATATAT
1 AATAATATATATAT
*
1364 AACT-ATATAAATAT
1 AA-TAATATATATAT
*
1378 AATACATATAAATAT
1 AATA-ATATATATAT
1393 TAACAGAAAA
Statistics
Matches: 49, Mismatches: 1, Indels: 10
0.82 0.02 0.17
Matches are distributed among these distances:
11 9 0.18
12 1 0.02
13 2 0.04
14 24 0.49
15 13 0.27
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (14 bp):
AATAATATATATAT
Found at i:1465 original size:16 final size:16
Alignment explanation
Indices: 1324--1466 Score: 69
Period size: 16 Copynumber: 9.2 Consensus size: 16
1314 AAGAGAAAAA
1324 AAATAATAATAA-AAT
1 AAATAATAATAATAAT
1339 -AATAATAAT-ATAAT
1 AAATAATAATAATAAT
1353 -AATATATATATAACTATAT
1 AAATA-ATA-ATAA-TA-AT
1372 AAAT-ATAATACAT-AT
1 AAATAATAATA-ATAAT
* * *
1387 AAATATTAACAGAAAAT
1 AAATAATAATA-ATAAT
1404 AAAT-A-AATAA-AGAT
1 AAATAATAATAATA-AT
*
1418 --ATACAT-ATATTAAT
1 AAATA-ATAATAATAAT
*
1432 ATATAATAATAATAAT
1 AAATAATAATAATAAT
1448 AAATAATAA-AATACAT
1 AAATAATAATAATA-AT
1464 AAA
1 AAA
1467 ATACAAAAAA
Statistics
Matches: 100, Mismatches: 9, Indels: 37
0.68 0.06 0.25
Matches are distributed among these distances:
12 2 0.02
13 2 0.02
14 25 0.25
15 19 0.19
16 30 0.30
17 11 0.11
18 6 0.06
19 2 0.02
20 3 0.03
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.31
Consensus pattern (16 bp):
AAATAATAATAATAAT
Found at i:3692 original size:35 final size:35
Alignment explanation
Indices: 3652--3723 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
3642 TAATATCATA
3652 ATAATGGTAGCAATGGAATTATTATTATTATTATT
1 ATAATGGTAGCAATGGAATTATTATTATTATTATT
3687 ATAATGGTAGCAATGGAATTATTATTATTATTATT
1 ATAATGGTAGCAATGGAATTATTATTATTATTATT
3722 AT
1 AT
3724 TATTATTATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.38, C:0.03, G:0.14, T:0.46
Consensus pattern (35 bp):
ATAATGGTAGCAATGGAATTATTATTATTATTATT
Found at i:3712 original size:3 final size:3
Alignment explanation
Indices: 3704--3745 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
3694 TAGCAATGGA
3704 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
3746 GATATTCTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:7108 original size:50 final size:51
Alignment explanation
Indices: 7018--7120 Score: 163
Period size: 50 Copynumber: 2.0 Consensus size: 51
7008 GGGGGTGGGA
* * *
7018 GGATTGGGTGTGGTGGGGCGTTGGGGGGGAAGGTGGGGAGGGATTGGGTGT
1 GGATTGGGTGTGGTAGGGCGTTGGGGAGGAAAGTGGGGAGGGATTGGGTGT
*
7069 GGATTGGGTGTGGTAGGGTGTT-GGGAGGAAAGTGGGGAGGGATTGGGTGT
1 GGATTGGGTGTGGTAGGGCGTTGGGGAGGAAAGTGGGGAGGGATTGGGTGT
7119 GG
1 GG
7121 TGGGATGTTG
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
50 28 0.58
51 20 0.42
ACGTcount: A:0.13, C:0.01, G:0.62, T:0.24
Consensus pattern (51 bp):
GGATTGGGTGTGGTAGGGCGTTGGGGAGGAAAGTGGGGAGGGATTGGGTGT
Found at i:7113 original size:39 final size:40
Alignment explanation
Indices: 7069--7153 Score: 129
Period size: 39 Copynumber: 2.1 Consensus size: 40
7059 GATTGGGTGT
*
7069 GGATTGGGTGTGGTAGGG-TGTTGGGA-GGAAAGTGGGGAG
1 GGATTGGGTGTGGT-GGGATGTTGGGAGGGAAAGTGGAGAG
*
7108 GGATTGGGTGTGGTGGGATGTTGGGAGGGAAGGTGGAGAG
1 GGATTGGGTGTGGTGGGATGTTGGGAGGGAAAGTGGAGAG
7148 GGATTG
1 GGATTG
7154 ATGGGGTGGG
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
38 3 0.07
39 22 0.52
40 17 0.40
ACGTcount: A:0.18, C:0.00, G:0.59, T:0.24
Consensus pattern (40 bp):
GGATTGGGTGTGGTGGGATGTTGGGAGGGAAAGTGGAGAG
Found at i:7162 original size:39 final size:39
Alignment explanation
Indices: 7069--7163 Score: 104
Period size: 39 Copynumber: 2.4 Consensus size: 39
7059 GATTGGGTGT
* * *
7069 GGATTGGGTGTGGTAGGG-TGTTGGGAGGAAAGTGGGGAG
1 GGATTGGATGGGGT-GGGATGTTGGGAGGAAAGTGGAGAG
* * *
7108 GGATTGGGTGTGGTGGGATGTTGGGAGGGAAGGTGGAGAG
1 GGATTGGATGGGGTGGGATGTTGGGA-GGAAAGTGGAGAG
7148 GGATT-GATGGGGTGGG
1 GGATTGGATGGGGTGGG
7164 GAGGGATTGA
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
38 3 0.06
39 31 0.62
40 16 0.32
ACGTcount: A:0.17, C:0.00, G:0.60, T:0.23
Consensus pattern (39 bp):
GGATTGGATGGGGTGGGATGTTGGGAGGAAAGTGGAGAG
Found at i:7424 original size:20 final size:20
Alignment explanation
Indices: 7387--7423 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7377 ATTGTGTTAT
*
7387 ATATTAATTTATAATTTTGC
1 ATATGAATTTATAATTTTGC
7407 ATATGAATTT-TAATTTT
1 ATATGAATTTATAATTTT
7424 TTTTGTTGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (20 bp):
ATATGAATTTATAATTTTGC
Found at i:7673 original size:25 final size:26
Alignment explanation
Indices: 7645--7693 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
7635 ACTAAAAATA
*
7645 AAAATATAGGTTTGAAAA-TTTTATT
1 AAAATATAAGTTTGAAAACTTTTATT
7670 AAAATATAAGTTTGAAAACTTTTA
1 AAAATATAAGTTTGAAAACTTTTA
7694 ATTTTTGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.47, C:0.02, G:0.10, T:0.41
Consensus pattern (26 bp):
AAAATATAAGTTTGAAAACTTTTATT
Found at i:11106 original size:6 final size:6
Alignment explanation
Indices: 11097--11133 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
11087 TTTAAGTCCA
* *
11097 GATGAT GATGGT GATGGA GATGGT GATGGT GATGGT G
1 GATGGT GATGGT GATGGT GATGGT GATGGT GATGGT G
11134 CGAATTTTGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.22, C:0.00, G:0.49, T:0.30
Consensus pattern (6 bp):
GATGGT
Found at i:11123 original size:18 final size:18
Alignment explanation
Indices: 11096--11131 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
11086 GTTTAAGTCC
11096 AGATGATGATGGTGATGG
1 AGATGATGATGGTGATGG
*
11114 AGATGGTGATGGTGATGG
1 AGATGATGATGGTGATGG
11132 TGCGAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.00, G:0.47, T:0.28
Consensus pattern (18 bp):
AGATGATGATGGTGATGG
Found at i:11500 original size:18 final size:18
Alignment explanation
Indices: 11477--11601 Score: 114
Period size: 18 Copynumber: 6.9 Consensus size: 18
11467 ATGGTTATTA
11477 TCCACCTCAAATGTATCC
1 TCCACCTCAAATGTATCC
*
11495 TCCACCTCCTCAAATATATCC
1 TCCA---CCTCAAATGTATCC
*
11516 TCCACCTCAAATGTATCAG
1 TCCACCTCAAATGTATC-C
* * *
11535 T-TACCACAAATGTACCC
1 TCCACCTCAAATGTATCC
* *
11552 TCCACCACAAATGTATCA
1 TCCACCTCAAATGTATCC
*
11570 T---CCTCAAATATATCC
1 TCCACCTCAAATGTATCC
11585 TCCACCTCAAATGTATC
1 TCCACCTCAAATGTATC
11602 AAGAACAAAG
Statistics
Matches: 85, Mismatches: 14, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
15 12 0.14
17 1 0.01
18 54 0.64
19 1 0.01
21 17 0.20
ACGTcount: A:0.32, C:0.36, G:0.05, T:0.27
Consensus pattern (18 bp):
TCCACCTCAAATGTATCC
Found at i:11507 original size:21 final size:21
Alignment explanation
Indices: 11481--11523 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
11471 TTATTATCCA
*
11481 CCTCAAATGTATCCTCCACCT
1 CCTCAAATATATCCTCCACCT
11502 CCTCAAATATATCCTCCACCT
1 CCTCAAATATATCCTCCACCT
11523 C
1 C
11524 AAATGTATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.26, C:0.44, G:0.02, T:0.28
Consensus pattern (21 bp):
CCTCAAATATATCCTCCACCT
Found at i:11924 original size:18 final size:18
Alignment explanation
Indices: 11901--12025 Score: 89
Period size: 18 Copynumber: 6.9 Consensus size: 18
11891 ATGGTTATTA
11901 TCCACCTCAAATGTATCT
1 TCCACCTCAAATGTATCT
* *
11919 TCCACCTCCTCAAATATATCA
1 TCCA---CCTCAAATGTATCT
*
11940 TCCACCTCAAATATATCAGT
1 TCCACCTCAAATGTATC--T
* *
11960 T--ACCACAAATGTACCT
1 TCCACCTCAAATGTATCT
* *
11976 TCCACCCCAAATGTATCA
1 TCCACCTCAAATGTATCT
* *
11994 T---CCTCAAATATATCC
1 TCCACCTCAAATGTATCT
12009 TCCACCTCAAATGTATC
1 TCCACCTCAAATGTATC
12026 AAGAACAAAG
Statistics
Matches: 84, Mismatches: 13, Indels: 20
0.72 0.11 0.17
Matches are distributed among these distances:
15 12 0.14
16 2 0.02
18 53 0.63
20 1 0.01
21 16 0.19
ACGTcount: A:0.33, C:0.34, G:0.04, T:0.29
Consensus pattern (18 bp):
TCCACCTCAAATGTATCT
Found at i:11931 original size:21 final size:21
Alignment explanation
Indices: 11905--11947 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
11895 TTATTATCCA
* *
11905 CCTCAAATGTATCTTCCACCT
1 CCTCAAATATATCATCCACCT
11926 CCTCAAATATATCATCCACCT
1 CCTCAAATATATCATCCACCT
11947 C
1 C
11948 AAATATATCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.28, C:0.40, G:0.02, T:0.30
Consensus pattern (21 bp):
CCTCAAATATATCATCCACCT
Found at i:11989 original size:424 final size:424
Alignment explanation
Indices: 11201--12047 Score: 1622
Period size: 424 Copynumber: 2.0 Consensus size: 424
11191 TTGGGCTTGC
11201 TGCTACTGGTGGACTTTTTATTAATATGGCAGAATACGGAGGAAATCCATTTGCTGAATCTAGTG
1 TGCTACTGGTGGACTTTTTATTAATATGGCAGAATACGGAGGAAATCCATTTGCTGAATCTAGTG
11266 AGGGTCAAAGTGCACGTACAGCTCGATCAAAAAGAAAAGCAAAGAAGCACCACTATGAAATTTCT
66 AGGGTCAAAGTGCACGTACAGCTCGATCAAAAAGAAAAGCAAAGAAGCACCACTATGAAATTTCT
*
11331 AGAGGTTCTTCATCTTCAGGTGAGAGATCAAATTCTAGTAACTTTGAGTATAGTGAATCATCTGC
131 AGAGGTTCTTCATCTTCAGGTGAGAGACCAAATTCTAGTAACTTTGAGTATAGTGAATCATCTGC
*
11396 TAGTACTCAAAGACATTACTATCCACCAGAACAACATAATTTTCAACCTCCTCATGGTTATTCAC
196 TAGTACTCAAAGACATTACTATCCACCAGAACAACATAATTTTCAACCTCCTCATGGTTATCCAC
*
11461 CTCCATATGGTTATTATCCACCTCAAATGTATCCTCCACCTCCTCAAATATATCCTCCACCTCAA
261 CTCCATATGGTTATTATCCACCTCAAATGTATCCTCCACCTCCTCAAATATATCATCCACCTCAA
*
11526 ATGTATCAGTTACCACAAATGTACCCTCCACCACAAATGTATCATCCTCAAATATATCCTCCACC
326 ATATATCAGTTACCACAAATGTACCCTCCACCACAAATGTATCATCCTCAAATATATCCTCCACC
11591 TCAAATGTATCAAGAACAAAGGTCTCAGGGATGT
391 TCAAATGTATCAAGAACAAAGGTCTCAGGGATGT
11625 TGCTACTGGTGGACTTTTTATTAATATGGCAGAATACGGAGGAAATCCATTTGCTGAATCTAGTG
1 TGCTACTGGTGGACTTTTTATTAATATGGCAGAATACGGAGGAAATCCATTTGCTGAATCTAGTG
*
11690 AGGGTCAAAGTGCACGTACAGCTCGATCAAAAGGAAAAGCAAAGAAGCACCACTATGAAATTTCT
66 AGGGTCAAAGTGCACGTACAGCTCGATCAAAAAGAAAAGCAAAGAAGCACCACTATGAAATTTCT
11755 AGAGGTTCTTCATCTTCAGGTGAGAGACCAAATTCTAGTAACTTTGAGTATAGTGAATCATCTGC
131 AGAGGTTCTTCATCTTCAGGTGAGAGACCAAATTCTAGTAACTTTGAGTATAGTGAATCATCTGC
11820 TAGTACTCAAAGACATTACTATCCACCAGAACAACATAATTTTCAACCTCCTCATGGTTATCCAC
196 TAGTACTCAAAGACATTACTATCCACCAGAACAACATAATTTTCAACCTCCTCATGGTTATCCAC
*
11885 CTCCATATGGTTATTATCCACCTCAAATGTATCTTCCACCTCCTCAAATATATCATCCACCTCAA
261 CTCCATATGGTTATTATCCACCTCAAATGTATCCTCCACCTCCTCAAATATATCATCCACCTCAA
* *
11950 ATATATCAGTTACCACAAATGTACCTTCCACCCCAAATGTATCATCCTCAAATATATCCTCCACC
326 ATATATCAGTTACCACAAATGTACCCTCCACCACAAATGTATCATCCTCAAATATATCCTCCACC
12015 TCAAATGTATCAAGAACAAAGGTCTCAGGGATG
391 TCAAATGTATCAAGAACAAAGGTCTCAGGGATG
12048 GAGATGGAGT
Statistics
Matches: 415, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
424 415 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (424 bp):
TGCTACTGGTGGACTTTTTATTAATATGGCAGAATACGGAGGAAATCCATTTGCTGAATCTAGTG
AGGGTCAAAGTGCACGTACAGCTCGATCAAAAAGAAAAGCAAAGAAGCACCACTATGAAATTTCT
AGAGGTTCTTCATCTTCAGGTGAGAGACCAAATTCTAGTAACTTTGAGTATAGTGAATCATCTGC
TAGTACTCAAAGACATTACTATCCACCAGAACAACATAATTTTCAACCTCCTCATGGTTATCCAC
CTCCATATGGTTATTATCCACCTCAAATGTATCCTCCACCTCCTCAAATATATCATCCACCTCAA
ATATATCAGTTACCACAAATGTACCCTCCACCACAAATGTATCATCCTCAAATATATCCTCCACC
TCAAATGTATCAAGAACAAAGGTCTCAGGGATGT
Found at i:12020 original size:51 final size:56
Alignment explanation
Indices: 11901--12023 Score: 141
Period size: 51 Copynumber: 2.3 Consensus size: 56
11891 ATGGTTATTA
* *
11901 TCCACCTCAAATGTATCTTCCACCTCCTCAAATATATCATCCACCTCAAATATATCAG
1 TCCACCTCAAATGTACCTTCCACCTCCTCAAATATATCAT-C-CCTCAAATATATCAC
* * *
11959 T-TACCACAAATGTACCTTCCA-C-CC-CAAATGTATCAT-CCTCAAATATATC-C
1 TCCACCTCAAATGTACCTTCCACCTCCTCAAATATATCATCCCTCAAATATATCAC
12009 TCCACCTCAAATGTA
1 TCCACCTCAAATGTA
12024 TCAAGAACAA
Statistics
Matches: 57, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
50 1 0.02
51 24 0.42
54 11 0.19
55 2 0.04
56 1 0.02
57 17 0.30
58 1 0.02
ACGTcount: A:0.33, C:0.34, G:0.04, T:0.28
Consensus pattern (56 bp):
TCCACCTCAAATGTACCTTCCACCTCCTCAAATATATCATCCCTCAAATATATCAC
Found at i:15661 original size:16 final size:17
Alignment explanation
Indices: 15642--15679 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
15632 TTTTTTTACA
15642 AAAAATATAATAAA-AT
1 AAAAATATAATAAATAT
*
15658 AAAAATATCATAAATAT
1 AAAAATATAATAAATAT
15675 AAAAA
1 AAAAA
15680 GAATCTAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (17 bp):
AAAAATATAATAAATAT
Found at i:23064 original size:22 final size:23
Alignment explanation
Indices: 23025--23067 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
23015 GTAAATAAAT
*
23025 TTAATTTTTAAATCTATTATTTA
1 TTAATTTTTAAATATATTATTTA
23048 TTAATTTTTAAA-ATATTATT
1 TTAATTTTTAAATATATTATT
23068 AAATTAGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.60
Consensus pattern (23 bp):
TTAATTTTTAAATATATTATTTA
Found at i:23073 original size:23 final size:24
Alignment explanation
Indices: 23020--23073 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
23010 ATTAGGTAAA
*
23020 TAAATTTAATTTTTAAATCTATTAT
1 TAAA-TTAATTTTTAAATATATTAT
*
23045 T-TATTAATTTTTAAA-ATATTAT
1 TAAATTAATTTTTAAATATATTAT
23067 TAAATTA
1 TAAATTA
23074 GTATTATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
22 7 0.28
23 16 0.64
24 1 0.04
25 1 0.04
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.56
Consensus pattern (24 bp):
TAAATTAATTTTTAAATATATTAT
Found at i:23352 original size:18 final size:19
Alignment explanation
Indices: 23307--23357 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 19
23297 CAAATTATAC
*
23307 TATTTAT-TAATATTAATA
1 TATTTATATAATTTTAATA
*
23325 TAATTA-ATAATTTTAAT-
1 TATTTATATAATTTTAATA
*
23342 TATTTATATAAATTTA
1 TATTTATATAATTTTA
23358 GAGTAACAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
17 5 0.19
18 22 0.81
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TATTTATATAATTTTAATA
Found at i:23669 original size:15 final size:16
Alignment explanation
Indices: 23649--23687 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
23639 TAACTATATA
23649 ATATTATAATTAA-AT
1 ATATTATAATTAACAT
*
23664 ATATTATATTTAACAT
1 ATATTATAATTAACAT
23680 ATAATTAT
1 AT-ATTAT
23688 TAAATAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 12 0.57
16 4 0.19
17 5 0.24
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (16 bp):
ATATTATAATTAACAT
Found at i:23707 original size:25 final size:24
Alignment explanation
Indices: 23679--23739 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
23669 ATATTTAACA
23679 TATAATTATTAAA-TAAAAATTAATT
1 TATAATTATTAAATTAAAAATT-A-T
*
23704 TATAATTA-TAAATTAATAATTAT
1 TATAATTATTAAATTAAAAATTAT
23727 TATAATTAATTAA
1 TATAATT-ATTAA
23740 TTATAATAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
23 8 0.25
24 6 0.19
25 18 0.56
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (24 bp):
TATAATTATTAAATTAAAAATTAT
Found at i:23717 original size:14 final size:14
Alignment explanation
Indices: 23700--23745 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
23690 AATAAAAATT
*
23700 AATTTATAATTATA
1 AATTAATAATTATA
23714 AATTAATAATTATTA
1 AATTAATAATTA-TA
23729 TAATTAATTAATTATA
1 -AATTAA-TAATTATA
23745 A
1 A
23746 TAAATCAGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 11 0.39
15 3 0.11
16 8 0.29
17 6 0.21
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AATTAATAATTATA
Found at i:23730 original size:17 final size:18
Alignment explanation
Indices: 23695--23750 Score: 71
Period size: 17 Copynumber: 3.2 Consensus size: 18
23685 TATTAAATAA
* *
23695 AAATTAATTTATAATTAT
1 AAATTAATTAATTATTAT
23713 AAATTAA-TAATTATTAT
1 AAATTAATTAATTATTAT
*
23730 -AATTAATTAATTATAAT
1 AAATTAATTAATTATTAT
23747 AAAT
1 AAAT
23751 CAGTATTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 6 0.18
17 17 0.52
18 10 0.30
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
AAATTAATTAATTATTAT
Found at i:23843 original size:9 final size:10
Alignment explanation
Indices: 23811--23850 Score: 50
Period size: 9 Copynumber: 4.2 Consensus size: 10
23801 ATTTTATCAA
23811 ATAATATATT
1 ATAATATATT
23821 A-AATATATT
1 ATAATATATT
23830 AATAATA-ATT
1 -ATAATATATT
23840 ATAATA-ATT
1 ATAATATATT
23849 AT
1 AT
23851 TTATAAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
9 19 0.68
10 5 0.18
11 4 0.14
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (10 bp):
ATAATATATT
Found at i:23984 original size:22 final size:21
Alignment explanation
Indices: 23955--24010 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 21
23945 AATAATTGGA
*
23955 TAAAATTATTATTATTATTTT
1 TAAAATTATAATTATTATTTT
*
23976 TAAAGATTATAATTATTATTAAT
1 TAAA-ATTATAATTATTATT-TT
*
23999 TAATATTATAAT
1 TAAAATTATAAT
24011 ATTTTTATAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 4 0.13
22 22 0.73
23 4 0.13
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.54
Consensus pattern (21 bp):
TAAAATTATAATTATTATTTT
Found at i:24118 original size:30 final size:29
Alignment explanation
Indices: 24027--24141 Score: 87
Period size: 30 Copynumber: 3.9 Consensus size: 29
24017 ATACTTTTTA
*
24027 ATAATATAAATTAATTAATATA-TTATTATT
1 ATAATAT-AATT-ATTAATATATTTAATATT
* * *
24057 ATTCAGATAA-TATTAATTATATGATAA-ATT
1 A-TAATATAATTATTAA-TATAT-TTAATATT
*
24087 ATAATATATTTTATTAATATATTTAATATT
1 ATAATATA-ATTATTAATATATTTAATATT
*
24117 ATATTATAATTA-TAATATA-TTAATA
1 ATAATATAATTATTAATATATTTAATA
24142 ATTTTTAATT
Statistics
Matches: 68, Mismatches: 10, Indels: 17
0.72 0.11 0.18
Matches are distributed among these distances:
27 6 0.09
28 12 0.18
29 16 0.24
30 22 0.32
31 12 0.18
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.50
Consensus pattern (29 bp):
ATAATATAATTATTAATATATTTAATATT
Found at i:24142 original size:17 final size:17
Alignment explanation
Indices: 23987--24145 Score: 58
Period size: 18 Copynumber: 8.8 Consensus size: 17
23977 AAAGATTATA
*
23987 ATTATTATTAA-TTAAT
1 ATTATTAATAATTTAAT
* *
24003 ATTA-TAATATTTTTAT
1 ATTATTAATAATTTAAT
* *
24019 ACTTTTTAATAATATAA-
1 A-TTATTAATAATTTAAT
*
24036 ATTAATTAAT-ATATTATT
1 ATT-ATTAATAAT-TTAAT
24054 ATTATTCAGATAATATTAATT
1 ATTATT-A-ATAAT-TTAA-T
* * *
24075 ATATGATAAATTATAATATAT
1 AT-T-ATTAATAAT-TTA-AT
*
24096 TTTATTAATATATTTAAT
1 ATTATTAATA-ATTTAAT
*
24114 ATTATATTATAATTATAAT
1 ATTAT-TAATAATT-TAAT
24133 A-TATTAATAATTT
1 ATTATTAATAATTT
24146 TTAATTTGAA
Statistics
Matches: 106, Mismatches: 21, Indels: 32
0.67 0.13 0.20
Matches are distributed among these distances:
15 4 0.04
16 14 0.13
17 20 0.19
18 24 0.23
19 18 0.17
20 9 0.08
21 12 0.11
22 3 0.03
23 2 0.02
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (17 bp):
ATTATTAATAATTTAAT
Found at i:24439 original size:22 final size:22
Alignment explanation
Indices: 24411--24453 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
24401 ATGAACTAAG
*
24411 ATAATTTAATAATTAT-TTTATA
1 ATAATTT-ATAATAATATTTATA
24433 ATAATTTATAATAATATTTAT
1 ATAATTTATAATAATATTTAT
24454 TTATAACACG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
ATAATTTATAATAATATTTATA
Found at i:24570 original size:26 final size:25
Alignment explanation
Indices: 24512--24570 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 25
24502 ATTTACTATT
24512 TTAATATTAAATTAATATAATATAA
1 TTAATATTAAATTAATATAATATAA
*
24537 CTATATATTAAATTATAATATAAT-TAA
1 TTA-ATATTAAA-T-TAATATAATATAA
24564 TTAATAT
1 TTAATAT
24571 AATGAATATT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
25 2 0.07
26 12 0.41
27 6 0.21
28 9 0.31
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (25 bp):
TTAATATTAAATTAATATAATATAA
Found at i:24714 original size:19 final size:17
Alignment explanation
Indices: 24687--24732 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 17
24677 TATTTATTTC
*
24687 AAATCATTAAAATAACAAT
1 AAATAATTAAAAT-A-AAT
24706 AAATAATTAAAATAAAT
1 AAATAATTAAAATAAAT
24723 ATAATAATTA
1 A-AATAATTA
24733 TAACTAACTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 4 0.16
18 9 0.36
19 12 0.48
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.30
Consensus pattern (17 bp):
AAATAATTAAAATAAAT
Found at i:24735 original size:24 final size:23
Alignment explanation
Indices: 24708--24753 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
24698 ATAACAATAA
*
24708 ATAATTAAAATAAATATAATAATT
1 ATAACTAAAATAAATAT-ATAATT
**
24732 ATAACTAACTTAAATATATAAT
1 ATAACTAAAATAAATATATAAT
24754 AGTTATTAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (23 bp):
ATAACTAAAATAAATATATAATT
Found at i:24790 original size:20 final size:21
Alignment explanation
Indices: 24767--24813 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
24757 TATTAATATT
24767 ATATAATTA-ATAAATAAATA
1 ATATAATTACATAAATAAATA
* *
24787 ATAT-ATTACATAATTATATA
1 ATATAATTACATAAATAAATA
*
24807 GTATAAT
1 ATATAAT
24814 ATATTAGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 4 0.18
20 16 0.73
21 2 0.09
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (21 bp):
ATATAATTACATAAATAAATA
Found at i:24792 original size:27 final size:27
Alignment explanation
Indices: 24762--24844 Score: 82
Period size: 27 Copynumber: 3.0 Consensus size: 27
24752 ATAGTTATTA
24762 ATATTATATAATTAATAAATA-AATAAT
1 ATATTATATAATT-ATAAATAGAATAAT
* *
24789 ATATTACATAATTAT--ATAGTATAAT
1 ATATTATATAATTATAAATAGAATAAT
24814 ATATTAGTATAATTTATAAATATGATATAAT
1 ATATTA-TATAA-TTATAAATA-GA-ATAAT
24845 TAGATTATTT
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
24 3 0.07
25 11 0.24
26 6 0.13
27 16 0.36
29 3 0.07
30 1 0.02
31 5 0.11
ACGTcount: A:0.52, C:0.01, G:0.04, T:0.43
Consensus pattern (27 bp):
ATATTATATAATTATAAATAGAATAAT
Found at i:24935 original size:23 final size:25
Alignment explanation
Indices: 24909--24980 Score: 69
Period size: 24 Copynumber: 2.9 Consensus size: 25
24899 GTATTTTAAC
*
24909 TATATTAATAT-TAATT-ATAGTAT
1 TATATTAATATATAATTAATAATAT
24932 TATATTTAAATTATATAATTAATAATAT
1 TATA-TT-AA-TATATAATTAATAATAT
* *
24960 TAT-TTAATATATTACTAATAA
1 TATATTAATATATAATTAATAA
24981 GAAATAATAT
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
23 4 0.10
24 14 0.34
25 4 0.10
26 5 0.12
27 5 0.12
28 9 0.22
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (25 bp):
TATATTAATATATAATTAATAATAT
Found at i:25588 original size:20 final size:20
Alignment explanation
Indices: 25536--25602 Score: 57
Period size: 20 Copynumber: 3.4 Consensus size: 20
25526 ATATTAATTA
*
25536 ATTATAAAA-TATTATAAAT
1 ATTATAAAATTATAATAAAT
* * * *
25555 CTTCTAATATTATAATTAAT
1 ATTATAAAATTATAATAAAT
*
25575 ATTATAAAATTATAAAACAAT
1 ATTATAAAATTATAATA-AAT
25596 -TTATAAA
1 ATTATAAA
25603 TTTAAAGTAA
Statistics
Matches: 36, Mismatches: 10, Indels: 3
0.73 0.20 0.06
Matches are distributed among these distances:
19 6 0.17
20 27 0.75
21 3 0.08
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (20 bp):
ATTATAAAATTATAATAAAT
Found at i:25910 original size:27 final size:27
Alignment explanation
Indices: 25880--25947 Score: 68
Period size: 27 Copynumber: 2.5 Consensus size: 27
25870 CCAATATTAG
25880 TAATAATTAATTGTATAT-TAATAAATA
1 TAATAATTAATT-TATATATAATAAATA
* * *
25907 TAATATATTAGTTTATATATTATAATTA
1 TAATA-ATTAATTTATATATAATAAATA
25935 -AATAATATAATTT
1 TAATAAT-TAATTT
25948 CAATTAGTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
26 2 0.06
27 19 0.56
28 13 0.38
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (27 bp):
TAATAATTAATTTATATATAATAAATA
Found at i:26273 original size:14 final size:15
Alignment explanation
Indices: 26254--26300 Score: 51
Period size: 17 Copynumber: 3.0 Consensus size: 15
26244 TTTATAATTA
26254 TATATAATTAATAAT
1 TATATAATTAATAAT
*
26269 T-TATAATCTTATAAT
1 TATATAAT-TAATAAT
26284 TATAATATATTAATAAT
1 TAT-ATA-ATTAATAAT
26301 AATGTGATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
14 6 0.23
15 8 0.31
16 1 0.04
17 9 0.35
18 2 0.08
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (15 bp):
TATATAATTAATAAT
Found at i:26281 original size:32 final size:33
Alignment explanation
Indices: 26207--26300 Score: 99
Period size: 32 Copynumber: 2.9 Consensus size: 33
26197 ATATTTTATA
* * * *
26207 ATTATAATT-TAA-TATAAAATAATATTAATTT
1 ATTATATTTATAATTATAATATATTAATAATTT
26238 ATTATATTTATAATTAT-ATATAATTAATAATTT
1 ATTATATTTATAATTATAATAT-ATTAATAATTT
26271 A-TA-ATCTTATAATTATAATATATTAATAAT
1 ATTATAT-TTATAATTATAATATATTAATAAT
26301 AATGTGATGT
Statistics
Matches: 54, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
31 10 0.19
32 27 0.50
33 17 0.31
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (33 bp):
ATTATATTTATAATTATAATATATTAATAATTT
Found at i:26798 original size:15 final size:15
Alignment explanation
Indices: 26762--26855 Score: 54
Period size: 14 Copynumber: 6.3 Consensus size: 15
26752 AATATTAAAA
* *
26762 TATATTATCTAATAA
1 TATATTATATAATAT
26777 TAT-TTATATAATAT
1 TATATTATATAATAT
*
26791 TATATTATTTAATTAAT
1 TATATTATATAA-T-AT
*
26808 GAATATT-TA-AATAT
1 -TATATTATATAATAT
*
26822 TAATATTA-ATTATATT
1 T-ATATTATATAATA-T
*
26838 TATATTAAAT-ATAT
1 TATATTATATAATAT
26852 TATA
1 TATA
26856 ATGAATTATA
Statistics
Matches: 63, Mismatches: 7, Indels: 19
0.71 0.08 0.21
Matches are distributed among these distances:
14 25 0.40
15 23 0.37
16 7 0.11
17 3 0.05
18 5 0.08
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (15 bp):
TATATTATATAATAT
Found at i:26799 original size:8 final size:8
Alignment explanation
Indices: 26783--26916 Score: 50
Period size: 8 Copynumber: 16.8 Consensus size: 8
26773 ATAATATTTA
26783 TATAATAT
1 TATAATAT
*
26791 TATATTAT
1 TATAATAT
26799 T-TAAT-T
1 TATAATAT
*
26805 AATGAATAT
1 TAT-AATAT
26814 T-TAA-A-
1 TATAATAT
26819 TATTAATAT
1 TA-TAATAT
*
26828 TAATTATAT
1 T-ATAATAT
26837 T-T-ATAT
1 TATAATAT
*
26843 TAAATATAT
1 TATA-ATAT
26852 TATAATGAAT
1 TATAAT--AT
26862 TATAATAT
1 TATAATAT
* *
26870 AATTATATT
1 TATAATA-T
* *
26879 TATTATAA
1 TATAATAT
* *
26887 TGTAATAA
1 TATAATAT
26895 TATAA-AT
1 TATAATAT
26902 TATAATAT
1 TATAATAT
26910 TAATAAT
1 T-ATAAT
26917 TTGATATATA
Statistics
Matches: 95, Mismatches: 15, Indels: 31
0.67 0.11 0.22
Matches are distributed among these distances:
5 1 0.01
6 7 0.07
7 16 0.17
8 35 0.37
9 27 0.28
10 9 0.09
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (8 bp):
TATAATAT
Found at i:26804 original size:57 final size:56
Alignment explanation
Indices: 26743--26854 Score: 140
Period size: 57 Copynumber: 2.0 Consensus size: 56
26733 AGATTATATA
*
26743 TAATTAA-GTAATATTAAAATA-TATTATCTAATAATATTTATA-TAATATTATATTATT
1 TAATTAATG-AATATTAAAATATTAATAT-TAATAATATTTATATTAA-A-TATATTATT
* *
26800 TAATTAATGAATATTTAAATATTAATATTAATTATATTTATATTAAATATATTAT
1 TAATTAATGAATATTAAAATATTAATATTAATAATATTTATATTAAATATATTAT
26855 AATGAATTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
56 8 0.16
57 32 0.65
58 9 0.18
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.50
Consensus pattern (56 bp):
TAATTAATGAATATTAAAATATTAATATTAATAATATTTATATTAAATATATTATT
Found at i:26864 original size:30 final size:32
Alignment explanation
Indices: 26828--26909 Score: 86
Period size: 30 Copynumber: 2.7 Consensus size: 32
26818 ATATTAATAT
*
26828 TAATTATATTTAT-ATTAAATATATTATAATG
1 TAATTATATATATAATTAAATATATTATAATG
* *
26859 -AATTATA-ATATAATTATATTTATTATAATG
1 TAATTATATATATAATTAAATATATTATAATG
26889 TAA-TA-ATATA-AATTATAATAT
1 TAATTATATATATAATTA-AATAT
26910 TAATAATTTG
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
29 9 0.21
30 31 0.74
31 2 0.05
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (32 bp):
TAATTATATATATAATTAAATATATTATAATG
Found at i:26865 original size:15 final size:15
Alignment explanation
Indices: 26829--26888 Score: 52
Period size: 15 Copynumber: 4.0 Consensus size: 15
26819 TATTAATATT
*
26829 AATTATATT-TATATT
1 AATTATATTATA-ATG
*
26844 AAATATATTATAATG
1 AATTATATTATAATG
* *
26859 AATTATAATATAATT
1 AATTATATTATAATG
26874 ATATT-TATTATAATG
1 A-ATTATATTATAATG
26889 TAATAATATA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
15 31 0.86
16 5 0.14
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (15 bp):
AATTATATTATAATG
Found at i:26883 original size:20 final size:20
Alignment explanation
Indices: 26822--26909 Score: 81
Period size: 20 Copynumber: 4.3 Consensus size: 20
26812 ATTTAAATAT
26822 TAATATTAATTATATTTATATTA
1 TAATA-TAATTATA-TTA-ATTA
*
26845 -AATAT-ATTATAATGAATTA
1 TAATATAATTAT-ATTAATTA
*
26864 TAATATAATTATATTTATTA
1 TAATATAATTATATTAATTA
* * *
26884 TAATGTAATAATATAAATTA
1 TAATATAATTATATTAATTA
26904 TAATAT
1 TAATAT
26910 TAATAATTTG
Statistics
Matches: 54, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
19 4 0.07
20 39 0.72
21 7 0.13
22 4 0.07
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (20 bp):
TAATATAATTATATTAATTA
Found at i:27537 original size:23 final size:22
Alignment explanation
Indices: 27502--27557 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
27492 ACTGAACAAT
27502 TATAT-ATTAATAAATAAAATAAC
1 TATATAATT-ATAAAT-AAATAAC
* *
27525 TATATAATTATAAATTAATAAT
1 TATATAATTATAAATAAATAAC
27547 TATTATAATTA
1 TA-TATAATTA
27558 AATTAATTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 7 0.24
23 19 0.66
24 3 0.10
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
TATATAATTATAAATAAATAAC
Found at i:27545 original size:14 final size:15
Alignment explanation
Indices: 27528--27569 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 15
27518 AAATAACTAT
27528 ATAATTATAAATT-A
1 ATAATTATAAATTAA
27542 ATAATTATTATAATTAA
1 ATAATTA-TA-AATTAA
27559 ATTAATTATAA
1 A-TAATTATAA
27570 TAATTTAGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
14 7 0.29
15 2 0.08
16 5 0.21
17 4 0.17
18 6 0.25
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATAATTATAAATTAA
Found at i:27566 original size:18 final size:16
Alignment explanation
Indices: 27500--27574 Score: 55
Period size: 18 Copynumber: 4.6 Consensus size: 16
27490 TTACTGAACA
*
27500 ATTATATATTAATAAAT
1 ATTATA-ATTAATAATT
** *
27517 AAAATAACTATATAATT
1 ATTATAATTA-ATAATT
27534 A-TA-AATTAATAATT
1 ATTATAATTAATAATT
27548 ATTATAATTAAATTAATT
1 ATTATAATT-AA-TAATT
*
27566 ATAATAATT
1 ATTATAATT
27575 TAGCATCAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
14 7 0.15
15 6 0.13
16 8 0.17
17 12 0.26
18 13 0.28
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (16 bp):
ATTATAATTAATAATT
Found at i:27665 original size:9 final size:10
Alignment explanation
Indices: 27633--27672 Score: 50
Period size: 9 Copynumber: 4.2 Consensus size: 10
27623 GTATTTATCA
27633 ATAATATATT
1 ATAATATATT
27643 A-AATATATT
1 ATAATATATT
27652 AATAATA-ATT
1 -ATAATATATT
27662 ATAATA-ATT
1 ATAATATATT
27671 AT
1 AT
27673 TTATAAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
9 19 0.68
10 5 0.18
11 4 0.14
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (10 bp):
ATAATATATT
Found at i:27684 original size:24 final size:22
Alignment explanation
Indices: 27610--27701 Score: 82
Period size: 23 Copynumber: 4.0 Consensus size: 22
27600 TAAAAAATAT
*
27610 AATAA-TATAATAAGTATTTATC
1 AATAATTATAATAA-TATTTATA
*
27632 AATAA-TATATTAAATATATTA-A
1 AATAATTATAAT-AATAT-TTATA
27654 TAATAATTATAATAATTATTTATA
1 -AATAATTATAATAA-TATTTATA
*
27678 AATTAATTATAATAATAGTTATA
1 AA-TAATTATAATAATATTTATA
27701 A
1 A
27702 TCATCACCAT
Statistics
Matches: 59, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
22 13 0.22
23 25 0.42
24 21 0.36
ACGTcount: A:0.53, C:0.01, G:0.02, T:0.43
Consensus pattern (22 bp):
AATAATTATAATAATATTTATA
Found at i:27845 original size:22 final size:21
Alignment explanation
Indices: 27789--27845 Score: 57
Period size: 19 Copynumber: 2.8 Consensus size: 21
27779 AAACTATTAC
*
27789 TATTATTATT-ATATTATTAT
1 TATTATTATTAATATTATAAT
* *
27809 TATT-TT-TAAAGATTATAAT
1 TATTATTATTAATATTATAAT
27828 TATTATTAATTAATATTA
1 TATTATT-ATTAATATTA
27846 CAACGTTTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
18 1 0.04
19 14 0.50
20 6 0.21
22 7 0.25
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (21 bp):
TATTATTATTAATATTATAAT
Found at i:28588 original size:12 final size:11
Alignment explanation
Indices: 28557--28586 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
28547 GAAAAAAAAT
28557 AATAAAAATGC
1 AATAAAAATGC
28568 AATAAAAATGC
1 AATAAAAATGC
28579 AATAAAAA
1 AATAAAAA
28587 ATAGCCAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.70, C:0.07, G:0.07, T:0.17
Consensus pattern (11 bp):
AATAAAAATGC
Found at i:28880 original size:6 final size:7
Alignment explanation
Indices: 28826--28886 Score: 50
Period size: 7 Copynumber: 8.3 Consensus size: 7
28816 AAAATATAAT
28826 AAAAATAA
1 AAAAAT-A
*
28834 AAAAAGTG
1 AAAAA-TA
28842 AAAAATGA
1 AAAAAT-A
28850 AAAAATA
1 AAAAATA
** * *
28857 ACGACTC
1 AAAAATA
28864 AAAAATA
1 AAAAATA
28871 AAAAATA
1 AAAAATA
28878 AAAAATA
1 AAAAATA
28885 AA
1 AA
28887 TAACAATTTC
Statistics
Matches: 41, Mismatches: 10, Indels: 5
0.73 0.18 0.09
Matches are distributed among these distances:
7 24 0.59
8 16 0.39
9 1 0.02
ACGTcount: A:0.75, C:0.05, G:0.07, T:0.13
Consensus pattern (7 bp):
AAAAATA
Found at i:29249 original size:8 final size:8
Alignment explanation
Indices: 29207--29250 Score: 54
Period size: 8 Copynumber: 5.5 Consensus size: 8
29197 AGAAATGAGT
29207 AAATAAAA
1 AAATAAAA
29215 AACATAAAA
1 AA-ATAAAA
**
29224 AAACCAAA
1 AAATAAAA
29232 AAAT-AAA
1 AAATAAAA
29239 AAATAAAA
1 AAATAAAA
29247 AAAT
1 AAAT
29251 TCAAAACTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
7 7 0.23
8 16 0.52
9 8 0.26
ACGTcount: A:0.82, C:0.07, G:0.00, T:0.11
Consensus pattern (8 bp):
AAATAAAA
Found at i:29518 original size:12 final size:12
Alignment explanation
Indices: 29470--29519 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 12
29460 TTTAGTTTAG
* *
29470 AAAATACAAAGA
1 AAAATATAAAAA
29482 AAAATA-AAAAA
1 AAAATATAAAAA
* *
29493 AATATATAGAAA
1 AAAATATAAAAA
29505 AAAATATAAAAA
1 AAAATATAAAAA
29517 AAA
1 AAA
29520 CTAAAGAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
11 9 0.28
12 23 0.72
ACGTcount: A:0.80, C:0.02, G:0.04, T:0.14
Consensus pattern (12 bp):
AAAATATAAAAA
Found at i:29527 original size:24 final size:23
Alignment explanation
Indices: 29481--29529 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
29471 AAATACAAAG
*
29481 AAAAATAAAAAAAATATATAGAA
1 AAAAATAAAAAAAATATAAAGAA
29504 AAAAATATAAAAAAA-ACTAAAGAA
1 AAAAATA-AAAAAAATA-TAAAGAA
29528 AA
1 AA
29530 GTTAATATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 8 0.35
24 15 0.65
ACGTcount: A:0.80, C:0.02, G:0.04, T:0.14
Consensus pattern (23 bp):
AAAAATAAAAAAAATATAAAGAA
Found at i:30678 original size:13 final size:13
Alignment explanation
Indices: 30662--30695 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
30652 TTTTAAAATC
30662 AATTTTAAATTTA
1 AATTTTAAATTTA
*
30675 AATTTAAAATTTA
1 AATTTTAAATTTA
*
30688 AAATTTAA
1 AATTTTAA
30696 CTTAATAAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
AATTTTAAATTTA
Found at i:30684 original size:7 final size:7
Alignment explanation
Indices: 30662--30695 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
30652 TTTTAAAATC
*
30662 AATTTTA
1 AATTTAA
30669 AATTT-A
1 AATTTAA
30675 AATTTAA
1 AATTTAA
30682 AATTTAA
1 AATTTAA
30689 AATTTAA
1 AATTTAA
30696 CTTAATAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.23
7 20 0.77
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (7 bp):
AATTTAA
Found at i:31343 original size:12 final size:11
Alignment explanation
Indices: 31328--31378 Score: 57
Period size: 12 Copynumber: 4.3 Consensus size: 11
31318 TTTGATTTTA
31328 TAATAAAATAAT
1 TAATAAAA-AAT
31340 TAATAAAAATAT
1 TAATAAAAA-AT
*
31352 TTATAAGTAAAAT
1 TAATAA--AAAAT
31365 TAATAAAAAAT
1 TAATAAAAAAT
31376 TAA
1 TAA
31379 AATTACATCT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
11 9 0.26
12 15 0.44
13 7 0.21
14 3 0.09
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (11 bp):
TAATAAAAAAT
Found at i:35042 original size:163 final size:163
Alignment explanation
Indices: 34767--35075 Score: 485
Period size: 163 Copynumber: 1.9 Consensus size: 163
34757 AATAAAACAT
* * *
34767 AAGTAATATAATCAGAAGCAACCAGTCTGATTTGATCTTTTCGTTCTCATTATACCATAACAAGC
1 AAGTAATATAATCAGAAGAAACCAGTCTGATTTGATCCTTTCATTCTCATTATACCATAACAAGC
* * * *
34832 AACCACCTTGAATTGATAGTTTCTGGTCTATCGCCACAGATCCTTTTTAACTCTCATTGTACTAG
66 AACCACCTTGAATTGATACTTTCTGGTCTACCGCCACAGAACCTTTTTAACTCTCATTCTACTAG
34897 TTCCTTAATGGTTGAAAGTGTTTATAGAATGAC
131 TTCCTTAATGGTTGAAAGTGTTTATAGAATGAC
* * * *
34930 AAGTAATATAATCAGAAGAAACCAGTCTGATTTGATCCTTTCATTCTCGTTAT-CCTGTAAGAAT
1 AAGTAATATAATCAGAAGAAACCAGTCTGATTTGATCCTTTCATTCTCATTATACC-ATAACAAG
**
34994 CAACCACCTTGAATTGATACTTTCTGGTCTACCGCCACAGAACCTTTTTCTCTCTCATTCTACTA
65 CAACCACCTTGAATTGATACTTTCTGGTCTACCGCCACAGAACCTTTTTAACTCTCATTCTACTA
35059 GTTCCTTAATGGTTGAA
130 GTTCCTTAATGGTTGAA
35076 GGTTTTAACA
Statistics
Matches: 132, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
162 2 0.02
163 130 0.98
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (163 bp):
AAGTAATATAATCAGAAGAAACCAGTCTGATTTGATCCTTTCATTCTCATTATACCATAACAAGC
AACCACCTTGAATTGATACTTTCTGGTCTACCGCCACAGAACCTTTTTAACTCTCATTCTACTAG
TTCCTTAATGGTTGAAAGTGTTTATAGAATGAC
Found at i:38972 original size:2 final size:2
Alignment explanation
Indices: 38965--38991 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
38955 TTGGATTTCT
38965 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
38992 TATTTATGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:42926 original size:3 final size:3
Alignment explanation
Indices: 42920--42946 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
42910 TAGCAATGGA
42920 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
42947 GATATTCTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:50138 original size:171 final size:170
Alignment explanation
Indices: 49833--50158 Score: 418
Period size: 170 Copynumber: 1.9 Consensus size: 170
49823 GCAAAATAAA
* *
49833 ACAAAGCAATATTAATCAGAAGGCAACCAGTCTGATTGATCCTTTCGTTCTTCATTATACCCGTA
1 ACAAAGCAATATTAATCAGAAGGCAACCAGTCTGATTGATCCTTTCATTCCTCATTATACCCGTA
*
49898 ACAAGCAACCACCTTGAATTGATCGTTTCCTGGTCCTCTCGCCACAGATCCTTTTTATCTCTCAT
66 ACAAGCAACCACCTTGAATTGATCGTTTCCTGGTCCTCTCGCCACAGAACCTTTTTATCTCTCAT
49963 TCTACTAG-CTCCTTAATGGTCTGAAAGTGGTTTAAGAATG
131 TCTACTAGTCTCCTTAATGGT-TGAAAGTGGTTTAAGAATG
* *
50003 ACAAAGTAATA-TAATCAGAA-GC-ACCAGTCCTGATTTGATCCTTTTCATTCCTCGTTAT-CCC
1 ACAAAGCAATATTAATCAGAAGGCAACCAGT-CTGA-TTGATCC-TTTCATTCCTCATTATACCC
* *
50064 TGTAAGAATCAACCACCTTGAATTGATAC-TTT-CTGGT-CTAAC-CGCCACTAGAAACCTTTTT
63 -GTAACAAGCAACCACCTTGAATTGAT-CGTTTCCTGGTCCT--CTCGCCAC-AG-AACCTTTTT
* *
50125 CTCTCTCATTCTACTAGTTTCCTTAATGGTTGAA
122 ATCTCTCATTCTACTAGTCTCCTTAATGGTTGAA
50159 GGTTTTAACA
Statistics
Matches: 137, Mismatches: 9, Indels: 19
0.83 0.05 0.12
Matches are distributed among these distances:
167 6 0.04
168 8 0.06
169 30 0.22
170 53 0.39
171 29 0.21
172 11 0.08
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (170 bp):
ACAAAGCAATATTAATCAGAAGGCAACCAGTCTGATTGATCCTTTCATTCCTCATTATACCCGTA
ACAAGCAACCACCTTGAATTGATCGTTTCCTGGTCCTCTCGCCACAGAACCTTTTTATCTCTCAT
TCTACTAGTCTCCTTAATGGTTGAAAGTGGTTTAAGAATG
Found at i:54052 original size:2 final size:2
Alignment explanation
Indices: 54045--54073 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
54035 TTGGATTTCT
54045 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
54074 TATTTATGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:58010 original size:3 final size:3
Alignment explanation
Indices: 58004--58030 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
57994 TAGCAATGGA
58004 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
58031 GATATTCTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:58932 original size:26 final size:26
Alignment explanation
Indices: 58898--58949 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
58888 ATTTTTTATT
58898 AATAAATAA-TT-TATTAATTTTTAAA
1 AATAAATAACTTCTATT-ATTTTTAAA
*
58923 AATAAGATAACTTCTCTTATTTTTAAA
1 AATAA-ATAACTTCTATTATTTTTAAA
58950 TTTTTTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 5 0.22
26 4 0.17
27 11 0.48
28 3 0.13
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (26 bp):
AATAAATAACTTCTATTATTTTTAAA
Found at i:77091 original size:877 final size:878
Alignment explanation
Indices: 73705--79855 Score: 10490
Period size: 879 Copynumber: 7.0 Consensus size: 878
73695 TGAAACTTGT
** *
73705 TTTAAGGATTAAAAATTTGTGTGGTTATGTATGGGAGTTTCC---TTGTTTTTCTCTTTGTGTGC
1 TTTAAGGATTAAAAA-TT-TGTGCCTGTGTATGGGAGTTTCCTTGTTGTTTTTCTCTTTGTGTGC
* * *
73767 TCTAAGCTAATGGTTTGCATGATTAGCTGATTTCAATTTCTGTGCCTGATGTGTGTGTAGGTGTA
64 TCTAAGCTAATGGCTTGCATGATTAGCTGAATTCAATTTATGTGCCTGATGTGTGTGTAGGTGTA
* * *
73832 TTTTGGGAGTTTTTTGTTTTGTTGATTTCACTCTGTTTGTTATAAAACAGGTTGGC---TTGGGT
129 TTTTGGGAGTTTTTTGTTTTGTTGATTTCACTCTGTTTGTTACAGAACAGGTTTGCTTGTTGGGT
* *
73894 TCAATTTTTGAAACTTAATTTTGACATGCATTGTGGTAAAATGTTTAAAAGGTAGATTATTTCCT
194 TCAATTTTTGAAACTTAATTTTGACATGCATTGTGGTAAAATGTTTAAAAGGAAGATTATTTTCT
* * *
73959 TTTGCTGGATTCTTTGAAATTCTAAATATGTGTATGGGAGTTTCCTTGTTGTTTTGTAGTGTAAG
259 TTTGCTGGATTTTTTGAAACTCTAAATATGTGTATGAGAGTTTCC-TGTTGTTTTGTAGTGT-AG
74024 GGGAATTAAGGATTCTAAATTTTTATGGTTGTGTAGCATTTAAGGATTAATAATTTGTGTCTGTG
322 GGGAATTAAGGATTCTAAATTTTTATGGTTGTGTAGCATTTAAGGATTAATAATTTGTGTCTGTG
* *
74089 TGTATGCGAGTTTCCCGGTTGTTTTTCTCCTTGTGTGCTTCGAACAGCGAATTCAATTTTTGTGC
387 TGTATGCGAGTTTCCCGGTTGTTTTTCTCCTTGTGTGCTTCAAACAGCGAATTCAATTTCTGTGC
* *
74154 CTCTTGTTTGTGTAAGTATGTGTTTAGGGAGATTTTTATTTTGTTGGTTTCACTCTATTTGTTAC
452 CTCTTGTTTGTGTAAGTATGTGTTTAGGGAGGTATTTATTTTGTTGGTTTCACTCTATTTGTTAC
* * *
74219 AGGGCAGATTGGTTTGCTAGGTTCAATTTTTGTAATTTAATTTTGGCATGTATTGTGGTTGAATG
517 AGGGCAGATTGGTTTGCTAGGTTCAATTTCTGTAATTTAATTTTGACATGCATTGTGGTTGAATG
* *
74284 CTTAAAAGAAAGATTATTTTCTTTTGCTGGATTCTTTGAAACTCTAAATATATGTTGTCATAAGC
582 CTTAAAAGGAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATATGTTGTCATAAGC
*
74349 TCTCAGTTGGTGTCTTTCTCATTGAAATTGTGTCTTGATTATTCTTGTTTCATTTTTAAATTTTT
647 TCTCAGTTGGTGTCTTTCTCATTGAAATTGTGTCTTGATTCTTCTTGTTTCATTTTTAAATTTTT
*
74414 ACATAAATTAGGGCTTTGTAACTTTACTTTGAAAAATTCCCTTGGGTTGTTCTT-TCTTTAGTGT
712 ACATAAATTAGGGCTTTGTAACTTTACTTTGAAAAATTTCCTTGGGTTGTTCTTCT-TTTAGTGT
* *
74478 GATTTGTGATTCGTTGGTCTCTATGAAACTTGTGCGCTATGTGCTTCAAGAACGACTTGCAGTGT
776 GATTTGTGATTCGTTGGTCTCTATGAAACTTATGCGCTATGTGCTCCAAGAACGACTTGCAGTGT
74543 AGGGGAGTTAAGGATTCTAAAGTTGTATGTGTGTAGGA
841 AGGGGAGTTAAGGATTCTAAAGTTGTATGTGTGTAGGA
*
74581 TTTAAGGATTAAAAATTTGTGTGACTGTGTATGGGAGTTTCCTTGTTGTTTTTCTCTTTGTGTGC
1 TTTAAGGATTAAAAA-TT-TGTGCCTGTGTATGGGAGTTTCCTTGTTGTTTTTCTCTTTGTGTGC
74646 TCTAAGCTAATGGCTTGCATGATTAGCTGAATTCAATTTATGTGCCTGATGTGTGTGTAGGTGTA
64 TCTAAGCTAATGGCTTGCATGATTAGCTGAATTCAATTTATGTGCCTGATGTGTGTGTAGGTGTA
*
74711 TTTTGGGAGTTTTTTGTTTTGTTGATTTCACTCTGTTTGTTACAGAACATGTTTGCTTGTTGGGT
129 TTTTGGGAGTTTTTTGTTTTGTTGATTTCACTCTGTTTGTTACAGAACAGGTTTGCTTGTTGGGT
*
74776 TCAATTTCTGAAACTTAATTTTGACATGCATTGTGGTAAAATGTTTAAAAGGAAGATTATTTTCT
194 TCAATTTTTGAAACTTAATTTTGACATGCATTGTGGTAAAATGTTTAAAAGGAAGATTATTTTCT
74841 TTTGCTGGATTTTTTGAAACTCTAAATATGTGTATGAGAGTTTCCTGTTGTTTTGTAGTGTAGGG
259 TTTGCTGGATTTTTTGAAACTCTAAATATGTGTATGAGAGTTTCCTGTTGTTTTGTAGTGTA-GG
74906 GGAATTAAGGATTCTAAATTTTTATGGTTGTGTAGCATTTAAGGATTAATAATTTGTGTCTGTGT
323 GGAATTAAGGATTCTAAATTTTTATGGTTGTGTAGCATTTAAGGATTAATAATTTGTGTCTGTGT
*
74971 GTAGGCGAGTTTCCCGGTTGTTTTTCTCCTTGTGTGCTTCAAACAGCGAATTCAATTTCTGTGCC
388 GTATGCGAGTTTCCCGGTTGTTTTTCTCCTTGTGTGCTTCAAACAGCGAATTCAATTTCTGTGCC
75036 TCTTGTTTGTGTAAGTATGTGTTTAGGGAGGTATTTATTTTGTTGGTTTCACTCTATTTGTTACA
453 TCTTGTTTGTGTAAGTATGTGTTTAGGGAGGTATTTATTTTGTTGGTTTCACTCTATTTGTTACA
* * *
75101 GGGTAGATTGGTTTGCTAAGTTCAATTTCTGTAATTTAATTTTGGCATGCATTGTGGTTGAATGC
518 GGGCAGATTGGTTTGCTAGGTTCAATTTCTGTAATTTAATTTTGACATGCATTGTGGTTGAATGC
* * * *
75166 TTAAAAGGAAGATTATTTTCTTTTACTGAATTTTTTGAAACTCTAAATATATGTTGTCATAAGCT
583 TTAAAAGGAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATATGTTGTCATAAGCT
75231 CTCAGTTGGTGTCTTTCTCATTGAAATTGTGTCTTGATTCTTCTTGTTTCATTTTTAAATTTTTA
648 CTCAGTTGGTGTCTTTCTCATTGAAATTGTGTCTTGATTCTTCTTGTTTCATTTTTAAATTTTTA
*
75296 CATAAATTAGGGCTTTGTAATTTTACTTTGAAAAATTTCCTTGGGTTGTTCTTCTTTTAGTGTGA
713 CATAAATTAGGGCTTTGTAACTTTACTTTGAAAAATTTCCTTGGGTTGTTCTTCTTTTAGTGTGA
75361 TTTGTGATTCGTTGGTCTCTATGAAACTTATGCGCTATGTGCTCCAAGAACGACTTGCAGTGTAG
778 TTTGTGATTCGTTGGTCTCTATGAAACTTATGCGCTATGTGCTCCAAGAACGACTTGCAGTGTAG
75426 GGGAGTTAAGGATTCTAAAGTTGTATGTGTGTAGGA
843 GGGAGTTAAGGATTCTAAAGTTGTATGTGTGTAGGA
*
75462 TTTAAGGATTAAAAATTTGTGCCTGTGTATGGGAGTTTTCTTGTTGTTTTTCTCTTTGTGTGCTC
1 TTTAAGGATTAAAAATTTGTGCCTGTGTATGGGAGTTTCCTTGTTGTTTTTCTCTTTGTGTGCTC
*
75527 TAAGCTAATGGCTTGCATGATTAGTTGAATTCAATTTATGTGCCTGA--TGTGTGTAGGTGTATT
66 TAAGCTAATGGCTTGCATGATTAGCTGAATTCAATTTATGTGCCTGATGTGTGTGTAGGTGTATT
*
75590 TTGGGAGTTTTTTGTTTTGTTGATTTTAACTCTGTTTGTTACAGAACAGGTTTGCTTGTTGGGTT
131 TTGGGAGTTTTTTGTTTTGTTGA-TTTCACTCTGTTTGTTACAGAACAGGTTTGCTTGTTGGGTT
75655 CAATTTTTGAAACTTAATTTTGACATGCATTGTGGTAAAATGTTTAAAAGGAAGATTATTTTCTT
195 CAATTTTTGAAACTTAATTTTGACATGCATTGTGGTAAAATGTTTAAAAGGAAGATTATTTTCTT
*
75720 TTGCTGGATTTTTTGAAACTCTAAATATGTGTATGGGAGTTTCCTGTTGTTTTGTAGTGTAAGGG
260 TTGCTGGATTTTTTGAAACTCTAAATATGTGTATGAGAGTTTCCTGTTGTTTTGTAGTGT-AGGG
75785 GAATTAAGGATTCTAAATTTTTATGGTTGTGTAGCATTTAAGGATTAATAATTTGTGTCTGTGTG
324 GAATTAAGGATTCTAAATTTTTATGGTTGTGTAGCATTTAAGGATTAATAATTTGTGTCTGTGTG
75850 TATGCGAGTTTCCCGGTTGTTTTTCTCCTTGTGTGCTTCAAACAGCGAATTCAATTTCTGTGCCT
389 TATGCGAGTTTCCCGGTTGTTTTTCTCCTTGTGTGCTTCAAACAGCGAATTCAATTTCTGTGCCT
75915 CTTGTTTGTGTAAGTATGTGTTTAGGGAGGTATTTATTTTGTTGGTTTCACTCTATTTGTTACAG
454 CTTGTTTGTGTAAGTATGTGTTTAGGGAGGTATTTATTTTGTTGGTTTCACTCTATTTGTTACAG
* * *
75980 GACAGATTGGTTTGTTAGGTTCAATTTCTGTAATTTAATTTTGACATGCATTGTGGTTGAATGTT
519 GGCAGATTGGTTTGCTAGGTTCAATTTCTGTAATTTAATTTTGACATGCATTGTGGTTGAATGCT
* *
76045 TAAAAGGAAGATTATTTCCTTTTGCTGGATTTTTTGAAACTCCAAATATATGTTGTCATAAGCTC
584 TAAAAGGAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATATGTTGTCATAAGCTC
76110 TCAGTTGGTGTCTTTCTCATTGAAATTGTGTCTTGATTCTTCTTGTTTCATTTTTAAATTTTTAC
649 TCAGTTGGTGTCTTTCTCATTGAAATTGTGTCTTGATTCTTCTTGTTTCATTTTTAAATTTTTAC
* *
76175 ATAAATTAGGGCTTTGTAATTTTACTTTGAAAAATTTCCTCGGGTTGTTCTTCTTTTAGTGTGAT
714 ATAAATTAGGGCTTTGTAACTTTACTTTGAAAAATTTCCTTGGGTTGTTCTTCTTTTAGTGTGAT
76240 TTGTGATTCGTTGGTCTCTATGAAACTTATGCGCTATGTGCTCCAAGAACGACTTGCAGTGTAGG
779 TTGTGATTCGTTGGTCTCTATGAAACTTATGCGCTATGTGCTCCAAGAACGACTTGCAGTGTAGG
76305 GGAGTTAAGGATTCTAAAGTTGTATGTGTGTAGGA
844 GGAGTTAAGGATTCTAAAGTTGTATGTGTGTAGGA
76340 TTTAAGGATTAAAAATTTGTGCCTGTGTATGGGAGTTTCCTTGTTGTTTTTCTCTTTGTGTGCTC
1 TTTAAGGATTAAAAATTTGTGCCTGTGTATGGGAGTTTCCTTGTTGTTTTTCTCTTTGTGTGCTC
*
76405 TAAGCTAATGGCTTGCATGATTAGCTGAATTCAATTTATGTGCCTGATTTGTGTGTAGGTGTATT
66 TAAGCTAATGGCTTGCATGATTAGCTGAATTCAATTTATGTGCCTGATGTGTGTGTAGGTGTATT
*
76470 TTGGGAGTTTTTTGTTTTGTTGATTTTAACTCTGTTTGTTACAGAACAGGTTTGCTTGTTGGGTT
131 TTGGGAGTTTTTTGTTTTGTTGA-TTTCACTCTGTTTGTTACAGAACAGGTTTGCTTGTTGGGTT
76535 CAATTTTTGAAACTTAATTTTGACATGCATTGTGGTAAAATGTTTAAAAGGAAGATTATTTTCTT
195 CAATTTTTGAAACTTAATTTTGACATGCATTGTGGTAAAATGTTTAAAAGGAAGATTATTTTCTT
* *
76600 TTGCTGAATTTTTTGAAACTCTAAATATGTGTATGAGAGTTTTCTGTTGTTTTGTAGTGTAGGGG
260 TTGCTGGATTTTTTGAAACTCTAAATATGTGTATGAGAGTTTCCTGTTGTTTTGTAGTGTAGGGG
*
76665 AATTAAGGATTTTAAATTTTTATGGTTGTGTAGCATTTAAGGATTAATAA-TT-TGTCTGTGTGT
325 AATTAAGGATTCTAAATTTTTATGGTTGTGTAGCATTTAAGGATTAATAATTTGTGTCTGTGTGT
*
76728 ATGCGAGTTTCCCGGTTGTTTTTCTCCTTGTGTGCTTCAAACAGCGAATTCAATTTTTGTGCCTC
390 ATGCGAGTTTCCCGGTTGTTTTTCTCCTTGTGTGCTTCAAACAGCGAATTCAATTTCTGTGCCTC
76793 TTGTTTGTGTAAGTATGTGTTTAGGGAGGTATTTATTTTGTTGGTTTCACTCTATTTGTTACAGG
455 TTGTTTGTGTAAGTATGTGTTTAGGGAGGTATTTATTTTGTTGGTTTCACTCTATTTGTTACAGG
76858 GCAGATTGGTTTGCTAGGTTCAATTTCTGTAATTTAATTTTGACATGCATTGTGGTTGAATGCTT
520 GCAGATTGGTTTGCTAGGTTCAATTTCTGTAATTTAATTTTGACATGCATTGTGGTTGAATGCTT
* *
76923 AAAAGGAAGATTATTTCCTTTTGCTGGATTTTTTGAAACTCCAAATATATGTTGTCATAAGCTCT
585 AAAAGGAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATATGTTGTCATAAGCTCT
* *
76988 CAGTTGGTGTCTTTCTCATTGAAATTGTGTCTTGATTTTTCTTGTTTCATTTTTAAAATTTTACA
650 CAGTTGGTGTCTTTCTCATTGAAATTGTGTCTTGATTCTTCTTGTTTCATTTTTAAATTTTTACA
* *
77053 TAAATTAGGGCTTTGTAATTTTACTTTGAAAAATTTCCTTGGTTTGTTCTTCTTTTAGTGTGATT
715 TAAATTAGGGCTTTGTAACTTTACTTTGAAAAATTTCCTTGGGTTGTTCTTCTTTTAGTGTGATT
77118 TGTGATTCGTTGGTCTCTATGAAACTTATGCGCTATGTGCTCCAAGAACGACTTGCAGTGTAGGG
780 TGTGATTCGTTGGTCTCTATGAAACTTATGCGCTATGTGCTCCAAGAACGACTTGCAGTGTAGGG
77183 GAGTTAAGGATTCTAAAGTTGTATGTGTGTAGGA
845 GAGTTAAGGATTCTAAAGTTGTATGTGTGTAGGA
*
77217 TTTAAAGATTAAAAATTTGTGCCTGTGTATGGGAGTTTCCTTGTTGTTTTTCTCTTTGTGTGCTC
1 TTTAAGGATTAAAAATTTGTGCCTGTGTATGGGAGTTTCCTTGTTGTTTTTCTCTTTGTGTGCTC
77282 TAAGCTAATGGCTTGCATGATTAGCTGAATTCAATTTATGTGCCTGATGTGTGTGTAGGTGTATT
66 TAAGCTAATGGCTTGCATGATTAGCTGAATTCAATTTATGTGCCTGATGTGTGTGTAGGTGTATT
*
77347 TT-GGAGTTTTTTGTTTTGTTGATTTTAACTCTGTTTGTTACAGAACAGGTTTGCTTGTTGGGTT
131 TTGGGAGTTTTTTGTTTTGTTGA-TTTCACTCTGTTTGTTACAGAACAGGTTTGCTTGTTGGGTT
77411 CAATTTTTGAAACTTAATTTTGACATGCATTGTGGTAAAATGTTTAAAAGGAAGATTATTTTCTT
195 CAATTTTTGAAACTTAATTTTGACATGCATTGTGGTAAAATGTTTAAAAGGAAGATTATTTTCTT
77476 TTGCTGGATTTTTTGAAACTCTAAATATGTGTATGAGAGTTTCCTGTTGTTTTGTAGTGTAGGGG
260 TTGCTGGATTTTTTGAAACTCTAAATATGTGTATGAGAGTTTCCTGTTGTTTTGTAGTGTA-GGG
77541 GAATTAAGGATTCTAAATTTTTATGGTTGTGTAGCATTTAAGGATTAATAATTTGTGTCTGTGTG
324 GAATTAAGGATTCTAAATTTTTATGGTTGTGTAGCATTTAAGGATTAATAATTTGTGTCTGTGTG
** *
77606 TATGCGAGTTTTTCGGTTGTTTTTCTTCTTGTGTGCTTCAAACAGCGAATTCAATTTCTGTGCCT
389 TATGCGAGTTTCCCGGTTGTTTTTCTCCTTGTGTGCTTCAAACAGCGAATTCAATTTCTGTGCCT
77671 CTTGTTTGTGTAAGTATGTGTTTAGGGAGGTATTTATTTTGTTGGTTTCACTCTATTTGTTACAG
454 CTTGTTTGTGTAAGTATGTGTTTAGGGAGGTATTTATTTTGTTGGTTTCACTCTATTTGTTACAG
* *
77736 GGTAGATTGATTTGCTAGGTTCAATTTCTGTAATTTAATTTTGACATGCATTGTGGTTGAATGCT
519 GGCAGATTGGTTTGCTAGGTTCAATTTCTGTAATTTAATTTTGACATGCATTGTGGTTGAATGCT
*
77801 TAAAAGGAAGATTATTTCATTTTGCTGGATTCTTTGAAACTCTAAATATATGTTGTCATAAGCTC
584 TAAAAGGAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATATGTTGTCATAAGCTC
*
77866 TCAGTTGGTGTCTTTCTCATTGAAATTGTGTCTTGATTTTTCTTGTTTCATTTTTAAATTTTTAC
649 TCAGTTGGTGTCTTTCTCATTGAAATTGTGTCTTGATTCTTCTTGTTTCATTTTTAAATTTTTAC
* *
77931 ATAAATTAGGGCTTTGTAACTTTACTTTGAAAAATTCCCTTGGGTTGTTCTTCCTTTAGTGTGAT
714 ATAAATTAGGGCTTTGTAACTTTACTTTGAAAAATTTCCTTGGGTTGTTCTTCTTTTAGTGTGAT
77996 TTGTGATTCGTTGGTCTCTATGAAACTTATGCGCTATGTGCTCCAAGAACGACTTGCAGTGTAGG
779 TTGTGATTCGTTGGTCTCTATGAAACTTATGCGCTATGTGCTCCAAGAACGACTTGCAGTGTAGG
78061 GGAGTTAAGGATTCTAAAGTTGTATGTGTGTAGGA
844 GGAGTTAAGGATTCTAAAGTTGTATGTGTGTAGGA
78096 TTTAAGGATTAAAAATTTGTGCCTGTGTATGGGAGTTTCCTTGTTGTTTTTCTCTTTGTGTGCTC
1 TTTAAGGATTAAAAATTTGTGCCTGTGTATGGGAGTTTCCTTGTTGTTTTTCTCTTTGTGTGCTC
* *
78161 TAAGCTAATGGCTTGCATGATTAGTTGAATTCAATTTATGTGCTTGATGTGTGTGTAGGTGTATT
66 TAAGCTAATGGCTTGCATGATTAGCTGAATTCAATTTATGTGCCTGATGTGTGTGTAGGTGTATT
* * *
78226 TTGGGAGTTTTTTATTTTATTTATTTCACTCTGTTTGTTACAGAACAGGTTTGCTTGTTGGGTTC
131 TTGGGAGTTTTTTGTTTTGTTGATTTCACTCTGTTTGTTACAGAACAGGTTTGCTTGTTGGGTTC
* * *
78291 AATTTCTGAAACTTAATTTTGACATGCATTATGGTAAAATGTTTAAAAGGAAGATTATTTTTTTT
196 AATTTTTGAAACTTAATTTTGACATGCATTGTGGTAAAATGTTTAAAAGGAAGATTATTTTCTTT
*
78356 TGCTGGATTTTTTGAAACTCTAAATATGTGTATGGGAGTTTCCTGTTGTTTTGTAGTGTAAGGGG
261 TGCTGGATTTTTTGAAACTCTAAATATGTGTATGAGAGTTTCCTGTTGTTTTGTAGTGT-AGGGG
*
78421 AATTAAGGATTCTAAATTTTTATAGTTGTGTAGCATTTAAGGATTAATAA-TT-TGTCTGTGTGT
325 AATTAAGGATTCTAAATTTTTATGGTTGTGTAGCATTTAAGGATTAATAATTTGTGTCTGTGTGT
78484 ATGCGAGTTTCCCGGTTGTTTTTCTCCTTGTGTGCTTCAAACAGCGAATTCAATTTCTGTGCCTC
390 ATGCGAGTTTCCCGGTTGTTTTTCTCCTTGTGTGCTTCAAACAGCGAATTCAATTTCTGTGCCTC
*
78549 TTGTTTGTGTAAGTATGTGTTTAGGGAGGTATTTATTTTGTTGGTTTCACTCTATTTGTTACATG
455 TTGTTTGTGTAAGTATGTGTTTAGGGAGGTATTTATTTTGTTGGTTTCACTCTATTTGTTACAGG
* *
78614 GTAGATTAGTTTGCTAGGTTCAATTTCTGTAATTTAATTTTGACATGCATTGTGGTTGAATGCTT
520 GCAGATTGGTTTGCTAGGTTCAATTTCTGTAATTTAATTTTGACATGCATTGTGGTTGAATGCTT
* *
78679 AAAAGAAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATATGTTGTCATAGGCTCT
585 AAAAGGAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATATGTTGTCATAAGCTCT
78744 CAGTTGGTGTCTTTCTCATTGAAATTGTGTCTTGATTCTTCTTGTTTCATTTTTAAATTTTTACA
650 CAGTTGGTGTCTTTCTCATTGAAATTGTGTCTTGATTCTTCTTGTTTCATTTTTAAATTTTTACA
* *
78809 TAAATTAGGGCTTTGTAACTTTACTTTGAAAAATTCCCTT-GG--GTTCTTCTTTTAGTGTGGTT
715 TAAATTAGGGCTTTGTAACTTTACTTTGAAAAATTTCCTTGGGTTGTTCTTCTTTTAGTGTGATT
* *
78871 TGTGATTCGTTGGTCTCTATGAAACTTATACGCTATGTGCTCCAAGAATGACTTGCAGTGTAGGA
780 TGTGATTCGTTGGTCTCTATGAAACTTATGCGCTATGTGCTCCAAGAACGACTTGCAGTGTAGG-
** * * *
78936 AAAATTAAGGATTCTAAAATTGTATGTGTGTAAGA
844 GGAGTTAAGGATTCTAAAGTTGTATGTGTGTAGGA
* *
78971 TTTAAGGATTAAAAATTTGTGTGGCTGTGTATGGGAG-TT--TTCTTGTTTTTCTCTTTGTGTGC
1 TTTAAGGATTAAAAA-TT-TGTGCCTGTGTATGGGAGTTTCCTTGTTGTTTTTCTCTTTGTGTGC
* *
79033 TCTAAGCTAATGGCTTGCATGATTAGCTGAATTTAATTTATGTGCTTGATGTGTGTGTAGGTGTA
64 TCTAAGCTAATGGCTTGCATGATTAGCTGAATTCAATTTATGTGCCTGATGTGTGTGTAGGTGTA
* *
79098 TTTTGAGAGTTTTTTGTTTTGTTGATTTCACTC----TGTTACAGAATAGGTTTGCTTGTTGGGT
129 TTTTGGGAGTTTTTTGTTTTGTTGATTTCACTCTGTTTGTTACAGAACAGGTTTGCTTGTTGGGT
* *
79159 TCAATTTTTGAAACTTAATTTTGACATGCGTTGTGGTAAAATGTTTGAAAGGAAGATTATTTTCT
194 TCAATTTTTGAAACTTAATTTTGACATGCATTGTGGTAAAATGTTTAAAAGGAAGATTATTTTCT
* *
79224 TTTGCTGGATTCTTTGAAACTCTAAATATATGTATGAGAGTTTCC--TTGTTTTGTAGTGTATGG
259 TTTGCTGGATTTTTTGAAACTCTAAATATGTGTATGAGAGTTTCCTGTTGTTTTGTAGTGTA-GG
* * * *
79287 GGAATTAAAGATTCTAAATTTTTATGTTTGTGTAGCATTTAAGGATTAATAATTTGTGGCCGTGT
323 GGAATTAAGGATTCTAAATTTTTATGGTTGTGTAGCATTTAAGGATTAATAATTTGTGTCTGTGT
* *** * **
79352 GTATGGGAGTTTCTTTGTTGTTTTTCTCCTTGTGTGCTTCAAGCAATGAATTCAATTTCTGTGCC
388 GTATGCGAGTTTCCCGGTTGTTTTTCTCCTTGTGTGCTTCAAACAGCGAATTCAATTTCTGTGCC
* * * * * *
79417 TCTTGTGTGTGTAGGTATATGTTTAGGGAGATTTTTATTTTGTTAGTTTCACTCTATTTGTTACA
453 TCTTGTTTGTGTAAGTATGTGTTTAGGGAGGTATTTATTTTGTTGGTTTCACTCTATTTGTTACA
* * * * *
79482 -GGCAGATTGGTTTGCTAAGTTTAATTTTTGTAATTTAATTTTGACATGAATTGTGATTGAATGC
518 GGGCAGATTGGTTTGCTAGGTTCAATTTCTGTAATTTAATTTTGACATGCATTGTGGTTGAATGC
* *
79546 TTAAAAGGAAGATTATTTTCTTTTGCTGGATTCTTTGAAACTCTAAATATATGTTGTCAT-AGGT
583 TTAAAAGGAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATATGTTGTCATAAGCT
* * * * * *
79610 CTCAGTTGGTGTCTTTCTAATTGAGATTGTCTCTGGATTTTTCTTGTGTCATTTTTAAATTTTTA
648 CTCAGTTGGTGTCTTTCTCATTGAAATTGTGTCTTGATTCTTCTTGTTTCATTTTTAAATTTTTA
*
79675 CATAAATTAGGGCTTTGTAACTTTACTTTGAAAAATTT-CTTTGG--GTTCTTCTTTTAGTGTG-
713 CATAAATTAGGGCTTTGTAACTTTACTTTGAAAAATTTCCTTGGGTTGTTCTTCTTTTAGTGTGA
* * * * * * *
79736 GTTGTGATTTGATGGTCTGTATGAAATTTAATGCGC--TGTGGTCCAAGAATGACTTGC-----A
778 TTTGTGATTCGTTGGTCTCTATGAAACTT-ATGCGCTATGTGCTCCAAGAACGACTTGCAGTGTA
* * *
79794 GGGGAATTATGGATTCTAAATTTGTATGGGTGTGTGTAGGA
842 GGGGAGTTAAGGATTCTAAAGTTGTA----TGTGTGTAGGA
79835 TTTAAGGATTAAAAATTTGTG
1 TTTAAGGATTAAAAATTTGTG
79856 TGGCTCTGTG
Statistics
Matches: 5064, Mismatches: 182, Indels: 72
0.95 0.03 0.01
Matches are distributed among these distances:
860 20 0.00
861 3 0.00
862 4 0.00
863 2 0.00
864 25 0.00
866 20 0.00
867 28 0.01
868 187 0.04
869 117 0.02
870 253 0.05
874 194 0.04
875 45 0.01
876 231 0.05
877 1097 0.22
878 824 0.16
879 1110 0.22
880 224 0.04
881 569 0.11
882 111 0.02
ACGTcount: A:0.22, C:0.10, G:0.22, T:0.45
Consensus pattern (878 bp):
TTTAAGGATTAAAAATTTGTGCCTGTGTATGGGAGTTTCCTTGTTGTTTTTCTCTTTGTGTGCTC
TAAGCTAATGGCTTGCATGATTAGCTGAATTCAATTTATGTGCCTGATGTGTGTGTAGGTGTATT
TTGGGAGTTTTTTGTTTTGTTGATTTCACTCTGTTTGTTACAGAACAGGTTTGCTTGTTGGGTTC
AATTTTTGAAACTTAATTTTGACATGCATTGTGGTAAAATGTTTAAAAGGAAGATTATTTTCTTT
TGCTGGATTTTTTGAAACTCTAAATATGTGTATGAGAGTTTCCTGTTGTTTTGTAGTGTAGGGGA
ATTAAGGATTCTAAATTTTTATGGTTGTGTAGCATTTAAGGATTAATAATTTGTGTCTGTGTGTA
TGCGAGTTTCCCGGTTGTTTTTCTCCTTGTGTGCTTCAAACAGCGAATTCAATTTCTGTGCCTCT
TGTTTGTGTAAGTATGTGTTTAGGGAGGTATTTATTTTGTTGGTTTCACTCTATTTGTTACAGGG
CAGATTGGTTTGCTAGGTTCAATTTCTGTAATTTAATTTTGACATGCATTGTGGTTGAATGCTTA
AAAGGAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATATGTTGTCATAAGCTCTC
AGTTGGTGTCTTTCTCATTGAAATTGTGTCTTGATTCTTCTTGTTTCATTTTTAAATTTTTACAT
AAATTAGGGCTTTGTAACTTTACTTTGAAAAATTTCCTTGGGTTGTTCTTCTTTTAGTGTGATTT
GTGATTCGTTGGTCTCTATGAAACTTATGCGCTATGTGCTCCAAGAACGACTTGCAGTGTAGGGG
AGTTAAGGATTCTAAAGTTGTATGTGTGTAGGA
Found at i:81826 original size:20 final size:20
Alignment explanation
Indices: 81803--81841 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
81793 TTTTCTTTTC
*
81803 TTTTTTTTTTTAGTTTTTAG
1 TTTTTTTTTTTACTTTTTAG
81823 TTTTTTTTTTTACTTTTTA
1 TTTTTTTTTTTACTTTTTA
81842 TGCATTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.10, C:0.03, G:0.05, T:0.82
Consensus pattern (20 bp):
TTTTTTTTTTTACTTTTTAG
Found at i:81890 original size:23 final size:23
Alignment explanation
Indices: 81864--81908 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
81854 ATTTTTGATT
81864 TATTATTT-TTTTGTTATTTATTA
1 TATT-TTTCTTTTGTTATTTATTA
* *
81887 TATTTTTCTTTTTTTTTTTATT
1 TATTTTTCTTTTGTTATTTATT
81909 TTCATTCCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (23 bp):
TATTTTTCTTTTGTTATTTATTA
Found at i:81904 original size:6 final size:6
Alignment explanation
Indices: 81798--81910 Score: 50
Period size: 6 Copynumber: 17.5 Consensus size: 6
81788 CTTTTTTTTC
* * * *
81798 TTTTCT TTTTTT TTTTAGT TTTTAGT TTTTTT TTTTACT TTTTAT GCATTT-T
1 TTTTAT TTTTAT TTTTA-T TTTTA-T TTTTAT TTTTA-T TTTTAT --TTTTAT
* * * *
81850 TTTAAT TTTTGAT TTATTAT TTTT-T TGTTATT TATTATAT TTTTCT TTTTTT
1 TTTTAT TTTT-AT TT-TTAT TTTTAT TTTTA-T T-TT-TAT TTTTAT TTTTAT
81902 TTTTAT TTT
1 TTTTAT TTT
81911 CATTCCTTTT
Statistics
Matches: 83, Mismatches: 13, Indels: 22
0.70 0.11 0.19
Matches are distributed among these distances:
5 6 0.07
6 36 0.43
7 31 0.37
8 8 0.10
9 2 0.02
ACGTcount: A:0.13, C:0.04, G:0.04, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:81908 original size:18 final size:18
Alignment explanation
Indices: 81789--81910 Score: 61
Period size: 20 Copynumber: 6.7 Consensus size: 18
81779 CTTTATTTAC
*
81789 TTTTTTTT-CTTTTCTTT
1 TTTTTTTTATTTTTCTTT
*
81806 TTTTTTTTAGTTTTTAGTTT
1 TTTTTTTTA-TTTTT-CTTT
* **
81826 TTTTTTTTACTTTTTATGCA
1 TTTTTTTTA-TTTTTCT-TT
* **
81846 TTTTTTTAATTTTT-GAT
1 TTTTTTTTATTTTTCTTT
* * * *
81863 TTATTATT-TTTTTGTTA
1 TTTTTTTTATTTTTCTTT
* *
81880 TTTATTATATTTTTCTTT
1 TTTTTTTTATTTTTCTTT
81898 TTTTTTTTATTTT
1 TTTTTTTTATTTT
81911 CATTCCTTTT
Statistics
Matches: 75, Mismatches: 24, Indels: 11
0.68 0.22 0.10
Matches are distributed among these distances:
16 5 0.07
17 17 0.23
18 18 0.24
19 10 0.13
20 25 0.33
ACGTcount: A:0.12, C:0.04, G:0.04, T:0.80
Consensus pattern (18 bp):
TTTTTTTTATTTTTCTTT
Found at i:82369 original size:19 final size:19
Alignment explanation
Indices: 82332--82368 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
82322 GGTTTGTCTC
82332 ATTTTTGTTGTAATTTTTT
1 ATTTTTGTTGTAATTTTTT
82351 ATTTTT-TTGGT-ATTTTTT
1 ATTTTTGTT-GTAATTTTTT
82369 TTCTATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.14, C:0.00, G:0.11, T:0.76
Consensus pattern (19 bp):
ATTTTTGTTGTAATTTTTT
Found at i:82444 original size:8 final size:8
Alignment explanation
Indices: 82433--82492 Score: 50
Period size: 8 Copynumber: 7.5 Consensus size: 8
82423 GTTCATTTGC
82433 TTTTATTT
1 TTTTATTT
*
82441 TTTTGTTT
1 TTTTATTT
**
82449 TAAT-TTT
1 TTTTATTT
*
82456 TTTTATATA
1 TTTTAT-TT
* *
82465 TTTTGTAT
1 TTTTATTT
82473 TTTTATTT
1 TTTTATTT
82481 TTTTATTT
1 TTTTATTT
82489 TTTT
1 TTTT
82493 TTTACAATTT
Statistics
Matches: 39, Mismatches: 11, Indels: 4
0.72 0.20 0.07
Matches are distributed among these distances:
7 5 0.13
8 28 0.72
9 6 0.15
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (8 bp):
TTTTATTT
Found at i:83335 original size:34 final size:32
Alignment explanation
Indices: 83277--83364 Score: 90
Period size: 33 Copynumber: 2.7 Consensus size: 32
83267 TTGATTAATT
* *
83277 ATTTTTTATTTTTTTAATTTTTATT-GTATTTTG
1 ATTTTTTTTTTTTTTTATTTTTATTGGTA--TTG
* *
83310 GTTTTTTTTTTTTTTTCTTTCTTATTGGTATTG
1 ATTTTTTTTTTTTTTTATTT-TTATTGGTATTG
*
83343 ATTTTTTTTTCTTTTT-TTTTTA
1 ATTTTTTTTTTTTTTTATTTTTA
83365 CTTTGTTTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
31 3 0.06
32 3 0.06
33 33 0.70
34 5 0.11
35 3 0.06
ACGTcount: A:0.11, C:0.03, G:0.07, T:0.78
Consensus pattern (32 bp):
ATTTTTTTTTTTTTTTATTTTTATTGGTATTG
Found at i:83400 original size:23 final size:20
Alignment explanation
Indices: 83346--83429 Score: 71
Period size: 23 Copynumber: 3.9 Consensus size: 20
83336 GGTATTGATT
*
83346 TTTTTTTCTTTTTTTTTTAC
1 TTTTATTCTTTTTTTTTTAC
*
83366 TTTGTTTATCTTTTTTGTTTTAC
1 TTT-TAT-TCTTTTTT-TTTTAC
83389 TTTAATATTCTTTTCTTATTTTA-
1 TTT--TATTCTTTT-TT-TTTTAC
83412 TTTTATTCTTTTTATTTT
1 TTTTATTCTTTTT-TTTT
83430 GGATTATTTT
Statistics
Matches: 55, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
20 7 0.13
21 13 0.24
22 8 0.15
23 18 0.33
24 9 0.16
ACGTcount: A:0.12, C:0.08, G:0.02, T:0.77
Consensus pattern (20 bp):
TTTTATTCTTTTTTTTTTAC
Found at i:83691 original size:23 final size:23
Alignment explanation
Indices: 83644--83698 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
83634 ATTAACTCTT
*
83644 TTTTTTA-ATTTTTTGTCTTTGA
1 TTTTTTATATTATTTGTCTTTGA
*
83666 TTTTTTATATTATTT-TCTTATTA
1 TTTTTTATATTATTTGTCTT-TGA
*
83689 TTTCTTATAT
1 TTTTTTATAT
83699 GTTCTTTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 11 0.39
23 17 0.61
ACGTcount: A:0.18, C:0.05, G:0.04, T:0.73
Consensus pattern (23 bp):
TTTTTTATATTATTTGTCTTTGA
Found at i:83785 original size:9 final size:8
Alignment explanation
Indices: 83773--84017 Score: 91
Period size: 9 Copynumber: 28.1 Consensus size: 8
83763 ATTTTATTCA
83773 TTTTTATCT
1 TTTTTAT-T
83782 TTTTTA-T
1 TTTTTATT
83789 TTTTTATT
1 TTTTTATT
*
83797 TTCTTACTT
1 TTTTTA-TT
*
83806 TTTATATT
1 TTTTTATT
83814 TTTTGTATT
1 TTTT-TATT
*
83823 TTTGT-TT
1 TTTTTATT
* *
83830 ATTTTATA
1 TTTTTATT
*
83838 TTTATATTT
1 TTTTTA-TT
83847 TTTTGTATT
1 TTTT-TATT
83856 TTATTTATCT
1 TT-TTTAT-T
*
83866 TTTTTGTT
1 TTTTTATT
83874 TTGCTTTAATT
1 TT--TTT-ATT
*
83885 TTTTTCTT
1 TTTTTATT
*
83893 ATTTTATT
1 TTTTTATT
83901 TATATTTATAT
1 T-T-TTTAT-T
*
83912 TTTTCATT
1 TTTTTATT
*
83920 TGGTTTA-T
1 T-TTTTATT
83928 TTTTTATT
1 TTTTTATT
* *
83936 TCTTTCTT
1 TTTTTATT
83944 TATTTATATT
1 T-TTT-TATT
**
83954 TTCATAAATT
1 TT--TTTATT
*
83964 TTTATAATGT
1 TTT-TTAT-T
**
83974 TTTGGATT
1 TTTTTATT
83982 TTTTTATT
1 TTTTTATT
83990 TTTTTATCT
1 TTTTTAT-T
*
83999 TTATTTCTTT
1 TT-TTT-ATT
84009 TTTTTATT
1 TTTTTATT
84017 T
1 T
84018 ATGGTTGTTA
Statistics
Matches: 176, Mismatches: 35, Indels: 51
0.67 0.13 0.19
Matches are distributed among these distances:
7 16 0.09
8 58 0.33
9 59 0.34
10 35 0.20
11 8 0.05
ACGTcount: A:0.17, C:0.05, G:0.04, T:0.74
Consensus pattern (8 bp):
TTTTTATT
Found at i:83792 original size:15 final size:14
Alignment explanation
Indices: 83772--83861 Score: 63
Period size: 16 Copynumber: 5.7 Consensus size: 14
83762 AATTTTATTC
83772 ATTTTTATCTTTTTT
1 ATTTTTAT-TTTTTT
*
83787 ATTTTTTATTTTCTT
1 A-TTTTTATTTTTTT
83802 ACTTTTTATATTTTTTGT
1 A--TTTT-TATTTTTT-T
*
83820 ATTTTTGTTTATTTT
1 ATTTTTATTT-TTTT
83835 ATATTTATATTTTTTT
1 AT-TTT-TATTTTTTT
*
83851 GTATTTTATTT
1 AT-TTTTATTT
83862 ATCTTTTTTG
Statistics
Matches: 63, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
15 19 0.30
16 31 0.49
17 11 0.17
18 2 0.03
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.77
Consensus pattern (14 bp):
ATTTTTATTTTTTT
Found at i:83823 original size:33 final size:32
Alignment explanation
Indices: 83772--83857 Score: 95
Period size: 33 Copynumber: 2.7 Consensus size: 32
83762 AATTTTATTC
* * * *
83772 ATTTTTATCTTTTTTAT-TTTTTATTT-TCTT
1 ATTTTTATATTTTTTGTATTTTTGTTTATTTT
83802 ACTTTTTATATTTTTTGTATTTTTGTTTATTTT
1 A-TTTTTATATTTTTTGTATTTTTGTTTATTTT
*
83835 ATATTTATATTTTTTTGTATTTT
1 ATTTTTATA-TTTTTTGTATTTT
83858 ATTTATCTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
30 1 0.02
31 14 0.30
32 15 0.32
33 17 0.36
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.77
Consensus pattern (32 bp):
ATTTTTATATTTTTTGTATTTTTGTTTATTTT
Found at i:83824 original size:8 final size:7
Alignment explanation
Indices: 83781--83849 Score: 50
Period size: 8 Copynumber: 8.9 Consensus size: 7
83771 CATTTTTATC
83781 TTTTTTA
1 TTTTTTA
83788 TTTTTTA
1 TTTTTTA
83795 TTTTCTTA
1 TTTT-TTA
83803 CTTTTTATA
1 -TTTTT-TA
83812 TTTTTTGTA
1 -TTTTT-TA
83821 TTTTTGT-
1 TTTTT-TA
83828 TTATTTTA
1 TT-TTTTA
*
83836 TATTTATA
1 T-TTTTTA
83844 TTTTTT
1 TTTTTT
83850 TGTATTTTAT
Statistics
Matches: 52, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
7 18 0.35
8 20 0.38
9 14 0.27
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.78
Consensus pattern (7 bp):
TTTTTTA
Found at i:83825 original size:32 final size:32
Alignment explanation
Indices: 83772--83870 Score: 107
Period size: 32 Copynumber: 3.2 Consensus size: 32
83762 AATTTTATTC
* *
83772 ATTTTTATCTTTTTTAT-TTTTTATTT-TCTT
1 ATTTTTATATTTTTTGTATTTTTATTTATCTT
* *
83802 ACTTTTTATATTTTTTGTATTTTTGTTTATTTT
1 A-TTTTTATATTTTTTGTATTTTTATTTATCTT
*
83835 ATATTTATATTTTTTTGTA-TTTTATTTATCTT
1 ATTTTTATA-TTTTTTGTATTTTTATTTATCTT
83867 -TTTT
1 ATTTT
83871 GTTTTGCTTT
Statistics
Matches: 57, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
30 1 0.02
31 17 0.30
32 26 0.46
33 13 0.23
ACGTcount: A:0.16, C:0.04, G:0.03, T:0.77
Consensus pattern (32 bp):
ATTTTTATATTTTTTGTATTTTTATTTATCTT
Found at i:83862 original size:21 final size:21
Alignment explanation
Indices: 83819--83907 Score: 78
Period size: 21 Copynumber: 4.2 Consensus size: 21
83809 ATATTTTTTG
83819 TATTTTTGTT-TATTTTATATTTA
1 TATTTTT-TTGTA-TTT-TATTTA
83842 TATTTTTTTGTATTTTATTTA
1 TATTTTTTTGTATTTTATTTA
* **
83863 T-CTTTTTTGT-TTTGCTTTA
1 TATTTTTTTGTATTTTATTTA
*
83882 -ATTTTTTTCTTATTTTATTTA
1 TATTTTTTT-GTATTTTATTTA
83903 TATTT
1 TATTT
83908 ATATTTTTCA
Statistics
Matches: 54, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
19 13 0.24
20 9 0.17
21 14 0.26
22 9 0.17
23 9 0.17
ACGTcount: A:0.17, C:0.03, G:0.04, T:0.75
Consensus pattern (21 bp):
TATTTTTTTGTATTTTATTTA
Found at i:83887 original size:19 final size:20
Alignment explanation
Indices: 83837--83889 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 20
83827 TTTATTTTAT
*
83837 ATTTATATTTTTTTGTATTTT
1 ATTTA-ATTTTTTTGTATTTG
83858 ATTT-ATCTTTTTTGT-TTTG
1 ATTTAAT-TTTTTTGTATTTG
*
83877 CTTTAATTTTTTT
1 ATTTAATTTTTTT
83890 CTTATTTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
19 14 0.50
20 10 0.36
21 4 0.14
ACGTcount: A:0.15, C:0.04, G:0.06, T:0.75
Consensus pattern (20 bp):
ATTTAATTTTTTTGTATTTG
Found at i:84482 original size:25 final size:24
Alignment explanation
Indices: 84432--84483 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
84422 TTTAATTTTT
* * *
84432 TATCTTTCATTTTTTATATCTTTA
1 TATCTTTCATTTGTTATATATATA
*
84456 TATCTTATTATTTGTTATATATATA
1 TATCTT-TCATTTGTTATATATATA
84481 TAT
1 TAT
84484 ATATATATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.27, C:0.08, G:0.02, T:0.63
Consensus pattern (24 bp):
TATCTTTCATTTGTTATATATATA
Found at i:84659 original size:19 final size:20
Alignment explanation
Indices: 84607--84659 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 20
84597 TTATTTTTTA
* *
84607 TTATTTTTTCTTTTTGTACT
1 TTATTTTTTCATTTTATACT
* *
84627 TT-TTTTTACCTTTTAT-CT
1 TTATTTTTTCATTTTATACT
84645 TTATTTTTTCATTTT
1 TTATTTTTTCATTTT
84660 TTATTTTTTC
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
18 4 0.15
19 21 0.78
20 2 0.07
ACGTcount: A:0.11, C:0.11, G:0.02, T:0.75
Consensus pattern (20 bp):
TTATTTTTTCATTTTATACT
Found at i:84985 original size:7 final size:7
Alignment explanation
Indices: 84973--85107 Score: 76
Period size: 7 Copynumber: 17.6 Consensus size: 7
84963 CAATTTGCCT
84973 TTTTTTA
1 TTTTTTA
84980 TTTTTTA
1 TTTTTTA
*
84987 TTTTTGA
1 TTTTTTA
*
84994 -TTATTA
1 TTTTTTA
85000 TTTTTTA
1 TTTTTTA
85007 TTTTCTTA
1 TTTT-TTA
85015 CTTTTTATA
1 -TTTTT-TA
*
85024 TTTTATA
1 TTTTTTA
85031 TTTTCTTA
1 TTTT-TTA
*
85039 TTGGTATTGA
1 TT--T-TTTA
*
85049 TTTTTTCTT
1 -TTTTT-TA
85058 TTTTTGTA
1 TTTTT-TA
85066 CTTTATTTA
1 -TTT-TTTA
*
85075 TCTTTTTC
1 T-TTTTTA
85083 TTATTTTA
1 TT-TTTTA
85091 -TTTTTA
1 TTTTTTA
85097 TTTTTTA
1 TTTTTTA
85104 TTTT
1 TTTT
85108 GGTTTATTTT
Statistics
Matches: 100, Mismatches: 13, Indels: 30
0.70 0.09 0.21
Matches are distributed among these distances:
6 9 0.09
7 40 0.40
8 29 0.29
9 14 0.14
10 5 0.05
11 3 0.03
ACGTcount: A:0.16, C:0.05, G:0.04, T:0.76
Consensus pattern (7 bp):
TTTTTTA
Found at i:85100 original size:20 final size:20
Alignment explanation
Indices: 84975--85101 Score: 60
Period size: 20 Copynumber: 5.8 Consensus size: 20
84965 ATTTGCCTTT
*
84975 TTTTATTTTTTATTTTTGATTA
1 TTTTA-TTTTTATTTTT-CTTA
*
84997 TTAT-TTTTTA-TTTTCTTA
1 TTTTATTTTTATTTTTCTTA
85015 CTTTTTATATTTTATATTTTCTTA
1 --TTTTAT-TTTTAT-TTTTCTTA
* *
85039 TTGGTATTGATTTTTTCTTTTTTTGTA
1 -T--T-TT-A-TTTTTATTTTTCT-TA
* * *
85066 CTTTATTTATCTTTTTCTTA
1 TTTTATTTTTATTTTTCTTA
85086 TTTTATTTTTATTTTT
1 TTTTATTTTTATTTTT
85102 TATTTTGGTT
Statistics
Matches: 82, Mismatches: 11, Indels: 26
0.69 0.09 0.22
Matches are distributed among these distances:
18 3 0.04
19 4 0.05
20 24 0.29
21 12 0.15
22 9 0.11
23 4 0.05
24 9 0.11
25 1 0.01
26 7 0.09
27 8 0.10
28 1 0.01
ACGTcount: A:0.16, C:0.06, G:0.04, T:0.75
Consensus pattern (20 bp):
TTTTATTTTTATTTTTCTTA
Found at i:85138 original size:17 final size:16
Alignment explanation
Indices: 85092--85140 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 16
85082 CTTATTTTAT
85092 TTTTATTTTTTATTTTG
1 TTTTA-TTTTTATTTTG
*
85109 GTTTATTTTTATTTCTG
1 TTTTATTTTTATTT-TG
*
85126 TTTTATTTATATTTT
1 TTTTATTTTTATTTT
85141 CATAAATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 10 0.36
17 18 0.64
ACGTcount: A:0.14, C:0.02, G:0.06, T:0.78
Consensus pattern (16 bp):
TTTTATTTTTATTTTG
Found at i:85465 original size:16 final size:15
Alignment explanation
Indices: 85444--85497 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
85434 TGTATTAAAA
85444 TTTTTTCTTTGTTAAT
1 TTTTTTCTTT-TTAAT
* *
85460 TTTTTTATTTTTTAT
1 TTTTTTCTTTTTAAT
* *
85475 TTTTTTCTTATTATT
1 TTTTTTCTTTTTAAT
85490 TTTTTTCT
1 TTTTTTCT
85498 ACTTTGTCAT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
15 23 0.72
16 9 0.28
ACGTcount: A:0.11, C:0.06, G:0.02, T:0.81
Consensus pattern (15 bp):
TTTTTTCTTTTTAAT
Found at i:85845 original size:9 final size:9
Alignment explanation
Indices: 85804--85845 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
85794 TTTTTTAAAA
85804 TTTTATTTT
1 TTTTATTTT
*
85813 CTTTT-TATT
1 -TTTTATTTT
85822 TTTTATTTT
1 TTTTATTTT
*
85831 TGTTATTTT
1 TTTTATTTT
85840 TTTTAT
1 TTTTAT
85846 AAAAATTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
8 4 0.15
9 19 0.70
10 4 0.15
ACGTcount: A:0.12, C:0.02, G:0.02, T:0.83
Consensus pattern (9 bp):
TTTTATTTT
Found at i:86242 original size:146 final size:143
Alignment explanation
Indices: 86040--86302 Score: 365
Period size: 146 Copynumber: 1.8 Consensus size: 143
86030 TACAATTTCA
86040 ATTATTTTATTTACTATTTTGGATTGTATAATATTTACTTTTATTTAATATAATTTGTTAAGAGA
1 ATTATTTTATTTACTATTTTGGATTGTATAATATTTACTTTTATTTAATATAATTTGTTAAGAGA
*
86105 TAATAATTATCT-TTATTATATTTCTTTTGAAAGTT-TTATTGGTTTTATATATAATTTTGAAAT
66 TAATAATTAT-TGTTATTAT-TTTCTTTTG-AA-TTGTTATTGG-CTTATATATAATTTTGAAAT
86168 TATTTTATTTATTACCTT
126 TATTTTATTTATTACCTT
* *
86186 ATTA-TTTATTTATTATTTTGAGATTGTATAATATTTATCTTTT-TTTTAT-TCAATTTGTTAAG
1 ATTATTTTATTTACTATTTTG-GATTGTATAATATTTA-CTTTTATTTAATAT-AATTTGTTAAG
* * *
86248 TGATAATAATTATTGTTGTTATTTTCTTTTGGATTGTTATTGGCTTATATATAAT
63 AGATAATAATTATTGTTATTATTTTCTTTTGAATTGTTATTGGCTTATATATAAT
86303 AACACTAGTT
Statistics
Matches: 106, Mismatches: 6, Indels: 13
0.85 0.05 0.10
Matches are distributed among these distances:
143 13 0.12
144 8 0.08
145 26 0.25
146 54 0.51
147 5 0.05
ACGTcount: A:0.29, C:0.04, G:0.09, T:0.58
Consensus pattern (143 bp):
ATTATTTTATTTACTATTTTGGATTGTATAATATTTACTTTTATTTAATATAATTTGTTAAGAGA
TAATAATTATTGTTATTATTTTCTTTTGAATTGTTATTGGCTTATATATAATTTTGAAATTATTT
TATTTATTACCTT
Found at i:86766 original size:15 final size:14
Alignment explanation
Indices: 86745--86802 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 14
86735 CTTCTATTAG
86745 TTTTTTTCATTTTT
1 TTTTTTTCATTTTT
*
86759 TATTTTTTC-TTAAGGTT
1 T-TTTTTTCATT---TTT
86776 TTTTTTTCATTTTT
1 TTTTTTTCATTTTT
86790 TTTTTTTGCATTT
1 TTTTTTT-CATTT
86803 CTTTCTACTT
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
14 12 0.33
15 12 0.33
16 7 0.19
17 5 0.14
ACGTcount: A:0.10, C:0.07, G:0.05, T:0.78
Consensus pattern (14 bp):
TTTTTTTCATTTTT
Found at i:86914 original size:17 final size:17
Alignment explanation
Indices: 86886--86936 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
86876 TTTAATTTCT
86886 TATCTT-TTATTTTTTA
1 TATCTTATTATTTTTTA
*
86902 TATCTTATTATTTGTTA
1 TATCTTATTATTTTTTA
*
86919 TATATATATATATTTTTT
1 TATCT-TAT-TATTTTTT
86937 TATTTTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
16 6 0.21
17 13 0.45
18 3 0.10
19 7 0.24
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.69
Consensus pattern (17 bp):
TATCTTATTATTTTTTA
Found at i:87167 original size:19 final size:19
Alignment explanation
Indices: 87145--87181 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
87135 TTTTTTCTTT
*
87145 AATTTTGTTATTTTTTAAA
1 AATTTTGTTATATTTTAAA
*
87164 AATTTTTTTATATTTTAA
1 AATTTTGTTATATTTTAA
87182 TCTTTTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (19 bp):
AATTTTGTTATATTTTAAA
Found at i:87664 original size:13 final size:13
Alignment explanation
Indices: 87638--87671 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
87628 CTTTCTATTT
*
87638 TTTTTCTTTTTTTA
1 TTTTT-TTTGTTTA
87652 TTTTTTTTGTTTA
1 TTTTTTTTGTTTA
87665 TTTTTTT
1 TTTTTTT
87672 CATTTTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.06, C:0.03, G:0.03, T:0.88
Consensus pattern (13 bp):
TTTTTTTTGTTTA
Found at i:87668 original size:20 final size:20
Alignment explanation
Indices: 87633--87720 Score: 65
Period size: 22 Copynumber: 4.2 Consensus size: 20
87623 GCTAACTTTC
87633 TATTTTTTTTC--T-TTTTT
1 TATTTTTTTTCTTTATTTTT
*
87650 TATTTTTTTTGTTTATTTTTT
1 TATTTTTTTTCTTTA-TTTTT
* * *
87671 TCATTTTTTTACTATTCTATTT
1 T-ATTTTTTTTCT-TTATTTTT
87693 TATTTTTTCTTACTTTATTTTT
1 TATTTTTT-TT-CTTTATTTTT
87715 TCATTT
1 T-ATTT
87721 ATATCTTTGT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
17 10 0.19
19 1 0.02
21 13 0.24
22 22 0.41
23 8 0.15
ACGTcount: A:0.12, C:0.08, G:0.01, T:0.78
Consensus pattern (20 bp):
TATTTTTTTTCTTTATTTTT
Found at i:87668 original size:21 final size:21
Alignment explanation
Indices: 87635--87680 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
87625 TAACTTTCTA
*
87635 TTTTTTTTCTTTTTTT-ATTT
1 TTTTTTTTATTTTTTTCATTT
87655 TTTTTGTTTATTTTTTTCATTT
1 TTTTT-TTTATTTTTTTCATTT
87677 TTTT
1 TTTT
87681 ACTATTCTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.22
21 10 0.43
22 8 0.35
ACGTcount: A:0.07, C:0.04, G:0.02, T:0.87
Consensus pattern (21 bp):
TTTTTTTTATTTTTTTCATTT
Found at i:87695 original size:30 final size:29
Alignment explanation
Indices: 87636--87700 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 29
87626 AACTTTCTAT
* * *
87636 TTTTTTTCTTTTTTTATTTTTTTTGTTTA
1 TTTTTTTCTTTTTTTATATTCTATGTTTA
87665 TTTTTTTCATTTTTTTACTATTCTAT-TTTA
1 TTTTTTTC-TTTTTTTA-TATTCTATGTTTA
87695 TTTTTT
1 TTTTTT
87701 CTTACTTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 8 0.26
30 18 0.58
31 5 0.16
ACGTcount: A:0.11, C:0.06, G:0.02, T:0.82
Consensus pattern (29 bp):
TTTTTTTCTTTTTTTATATTCTATGTTTA
Found at i:87998 original size:25 final size:22
Alignment explanation
Indices: 87956--88023 Score: 64
Period size: 25 Copynumber: 2.7 Consensus size: 22
87946 TTTTGCAGAA
87956 TTTTTTTTATTTCATTATTTACTTCT
1 TTTTTTTTATTT--TTATTTA-TT-T
87982 TTTTTTTTACTTTTTATTTTATTT
1 TTTTTTTTA-TTTTTA-TTTATTT
88006 TATTTTTTTAATTTTTAT
1 T-TTTTTTT-ATTTTTAT
88024 GCATTTTCTT
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
24 3 0.08
25 18 0.47
26 14 0.37
27 3 0.08
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (22 bp):
TTTTTTTTATTTTTATTTATTT
Found at i:88397 original size:14 final size:14
Alignment explanation
Indices: 88365--88397 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
88355 TTGTATTAAC
88365 TTTTTTTTCTTTTA
1 TTTTTTTTCTTTTA
*
88379 ATTTTTTTC-TTTA
1 TTTTTTTTCTTTTA
88392 TTTTTT
1 TTTTTT
88398 ATTATTTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.09, C:0.06, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTTTTTCTTTTA
Found at i:88417 original size:39 final size:40
Alignment explanation
Indices: 88340--88417 Score: 90
Period size: 39 Copynumber: 2.0 Consensus size: 40
88330 CCTTCTTTTG
* *
88340 TTTTTATTTTTTATTTTGTATTAACTTTTTTTTCTTTTAA
1 TTTTTATTCTTTATTTTGTATTAACTTTTTTTTATTTTAA
*
88380 TTTTT-TTCTTTATTTTTTATT-A-TTTGTTATTTATTTTA
1 TTTTTATTCTTTATTTTGTATTAACTTT-TT-TTTATTTTA
88418 TAAACTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
37 3 0.09
38 3 0.09
39 22 0.67
40 5 0.15
ACGTcount: A:0.17, C:0.04, G:0.03, T:0.77
Consensus pattern (40 bp):
TTTTTATTCTTTATTTTGTATTAACTTTTTTTTATTTTAA
Found at i:88557 original size:13 final size:13
Alignment explanation
Indices: 88539--88563 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
88529 TTTTTTATAT
88539 ATTTTGTATTTTC
1 ATTTTGTATTTTC
88552 ATTTTGTATTTT
1 ATTTTGTATTTT
88564 TTTCTTGCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.08, T:0.72
Consensus pattern (13 bp):
ATTTTGTATTTTC
Found at i:89028 original size:14 final size:14
Alignment explanation
Indices: 88994--89030 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 14
88984 TCTTTTTGAA
88994 TCTTTTTTATTTTC
1 TCTTTTTTATTTTC
*
89008 TCATTTTTTATTTTG
1 TC-TTTTTTATTTTC
89023 TCTTTTTT
1 TCTTTTTT
89031 TGCTATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.08, C:0.11, G:0.03, T:0.78
Consensus pattern (14 bp):
TCTTTTTTATTTTC
Found at i:89473 original size:12 final size:11
Alignment explanation
Indices: 89458--89544 Score: 59
Period size: 12 Copynumber: 7.4 Consensus size: 11
89448 TTTATTCAAA
89458 TTTTATCTTTTT
1 TTTTAT-TTTTT
*
89470 TTTTATTTTTG
1 TTTTATTTTTT
* *
89481 ATTCATTTTTT
1 TTTTATTTTTT
89492 TATTT-TCTTATTT
1 T-TTTAT-TT-TTT
89505 TTTTATATTTTT
1 TTTTAT-TTTTT
*
89517 TATTATATTTTT
1 TTTTAT-TTTTT
*
89529 GTTTATTTTTT
1 TTTTATTTTTT
89540 ATTTT
1 -TTTT
89545 TCTTTTCTTA
Statistics
Matches: 59, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
11 18 0.31
12 34 0.58
13 7 0.12
ACGTcount: A:0.15, C:0.03, G:0.02, T:0.79
Consensus pattern (11 bp):
TTTTATTTTTT
Found at i:89478 original size:10 final size:10
Alignment explanation
Indices: 89458--89539 Score: 53
Period size: 10 Copynumber: 8.1 Consensus size: 10
89448 TTTATTCAAA
*
89458 TTTTATCTTT
1 TTTTATTTTT
*
89468 TTTT-TTATT
1 TTTTATTTTT
*
89477 TTTGATTCATTT
1 TTTTATT--TTT
89489 TTTTA--TTT
1 TTTTATTTTT
*
89497 TCTTATTTTT
1 TTTTATTTTT
*
89507 TTATATTTTT
1 TTTTATTTTT
89517 TATTATATTTTT
1 T-TT-TATTTTT
*
89529 GTTTATTTTT
1 TTTTATTTTT
89539 T
1 T
89540 ATTTTTCTTT
Statistics
Matches: 54, Mismatches: 11, Indels: 14
0.68 0.14 0.18
Matches are distributed among these distances:
8 7 0.13
9 6 0.11
10 25 0.46
11 3 0.06
12 13 0.24
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.79
Consensus pattern (10 bp):
TTTTATTTTT
Found at i:89515 original size:37 final size:39
Alignment explanation
Indices: 89465--89545 Score: 105
Period size: 37 Copynumber: 2.1 Consensus size: 39
89455 AAATTTTATC
*
89465 TTTTTTTTTATTTTTGATT-CA-TTTT-TTTATTTTCTTA
1 TTTTTTTATATTTTTGATTACATTTTTGTTTATTTT-TTA
* *
89502 TTTTTTTATATTTTTTATTATATTTTTGTTTATTTTTTA
1 TTTTTTTATATTTTTGATTACATTTTTGTTTATTTTTTA
89541 TTTTT
1 TTTTT
89546 CTTTTCTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
37 17 0.45
38 1 0.03
39 12 0.32
40 8 0.21
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.80
Consensus pattern (39 bp):
TTTTTTTATATTTTTGATTACATTTTTGTTTATTTTTTA
Found at i:89528 original size:22 final size:22
Alignment explanation
Indices: 89500--89542 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
89490 TTTATTTTCT
89500 TATTTTT-TTATATTTTTTATTA
1 TATTTTTGTT-TATTTTTTATTA
89522 TATTTTTGTTTATTTTTTATT
1 TATTTTTGTTTATTTTTTATT
89543 TTTCTTTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 18 0.90
23 2 0.10
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (22 bp):
TATTTTTGTTTATTTTTTATTA
Found at i:89620 original size:14 final size:15
Alignment explanation
Indices: 89603--89631 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
89593 TCGTCTTGCT
89603 TTTTTCTTTT-TTTC
1 TTTTTCTTTTATTTC
89617 TTTTTCTTTTATTTC
1 TTTTTCTTTTATTTC
89632 ATATTTTTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTCTTTTATTTC
Found at i:89664 original size:26 final size:23
Alignment explanation
Indices: 89605--89666 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 23
89595 GTCTTGCTTT
*
89605 TTTCTTTTTTTCTTTTTCTTTTA
1 TTTCTTTTTTTCCTTTTCTTTTA
*
89628 TTTCATATTTTTGCCTTTTCATTTTA
1 TTTC-T-TTTTTTCCTTTTC-TTTTA
89654 TTTCTTGTTTTTC
1 TTTCTT-TTTTTC
89667 TAATTTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
23 4 0.12
24 2 0.06
25 17 0.53
26 9 0.28
ACGTcount: A:0.08, C:0.15, G:0.03, T:0.74
Consensus pattern (23 bp):
TTTCTTTTTTTCCTTTTCTTTTA
Found at i:89865 original size:18 final size:18
Alignment explanation
Indices: 89838--89872 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
89828 CCTGTCATCC
*
89838 CTTTTCATTTTTTATCTT
1 CTTTTAATTTTTTATCTT
89856 CTTTTAATTTTTTATCT
1 CTTTTAATTTTTTATCT
89873 GTGATTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (18 bp):
CTTTTAATTTTTTATCTT
Found at i:89920 original size:16 final size:16
Alignment explanation
Indices: 89862--89918 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
89852 TCTTCTTTTA
*
89862 ATTTTTTATCTGTGAT
1 ATTTTTTATCTGTTAT
89878 -TTTTTATATCT-TTAT
1 ATTTTT-TATCTGTTAT
* *
89893 ATCTTATTATTTGTTAT
1 AT-TTTTTATCTGTTAT
89910 ATTTTTTAT
1 ATTTTTTAT
89919 TTTTTTTGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
15 8 0.24
16 16 0.48
17 9 0.27
ACGTcount: A:0.21, C:0.05, G:0.05, T:0.68
Consensus pattern (16 bp):
ATTTTTTATCTGTTAT
Found at i:90125 original size:23 final size:23
Alignment explanation
Indices: 90050--90125 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
90040 TTTACTTTTT
90050 TTTTTCTCTTTTTTAGTGC--TTAT
1 TTTTTCTCTTTTTT--TGCTTTTAT
* * *
90073 TTTATCTTTTTCCTTTTGCTTTAAT
1 TTTTTCTCTTT--TTTTGCTTTTAT
* *
90098 ATTTTCTCTTTTTTTCCTTTTAT
1 TTTTTCTCTTTTTTTGCTTTTAT
90121 TTTTT
1 TTTTT
90126 TTTTGTTTTT
Statistics
Matches: 40, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
23 26 0.65
25 14 0.35
ACGTcount: A:0.09, C:0.14, G:0.04, T:0.72
Consensus pattern (23 bp):
TTTTTCTCTTTTTTTGCTTTTAT
Found at i:90397 original size:22 final size:21
Alignment explanation
Indices: 90346--90389 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 21
90336 ATTTAATCCA
90346 ATTTGGATTATTTTATTTATT
1 ATTTGGATTATTTTATTTATT
*
90367 A-CT-GATTATTTTATTTATT
1 ATTTGGATTATTTTATTTATT
90386 ATTT
1 ATTT
90390 TGGCTTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
19 17 0.85
20 2 0.10
21 1 0.05
ACGTcount: A:0.25, C:0.02, G:0.07, T:0.66
Consensus pattern (21 bp):
ATTTGGATTATTTTATTTATT
Found at i:90803 original size:24 final size:23
Alignment explanation
Indices: 90768--90820 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
90758 TCACTTATTA
90768 TTTTTTTGTTATTTACTATATTTT
1 TTTTTTTGTTATTT-CTATATTTT
*
90792 TCTTTTTT-TTATTTCTATCTTTT
1 T-TTTTTTGTTATTTCTATATTTT
90815 TTTTTT
1 TTTTTT
90821 ACAAAATACT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
22 5 0.19
23 9 0.33
24 7 0.26
25 6 0.22
ACGTcount: A:0.11, C:0.08, G:0.02, T:0.79
Consensus pattern (23 bp):
TTTTTTTGTTATTTCTATATTTT
Done.