Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168484.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_82, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111177
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.41
Warning! 1000 characters in sequence are not A, C, G, or T
File 2 of 2
Found at i:91133 original size:15 final size:15
Alignment explanation
Indices: 91102--91158 Score: 53
Period size: 15 Copynumber: 3.6 Consensus size: 15
91092 CTTCTTCTAA
91102 TTTTT-TATCTTTGAT
1 TTTTTATATCTTT-AT
91117 TTTTTATATCTTTAT
1 TTTTTATATCTTTAT
* *
91132 TTCTTATTATTTTTTAT
1 TTTTTA-TA-TCTTTAT
91149 ATTTTTATAT
1 -TTTTTATAT
91159 TTTTTGTTTG
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
15 12 0.34
16 10 0.29
17 8 0.23
18 5 0.14
ACGTcount: A:0.19, C:0.05, G:0.02, T:0.74
Consensus pattern (15 bp):
TTTTTATATCTTTAT
Found at i:91161 original size:15 final size:14
Alignment explanation
Indices: 91101--91176 Score: 55
Period size: 14 Copynumber: 5.1 Consensus size: 14
91091 TCTTCTTCTA
* *
91101 ATTTTTTATCTTTG
1 ATTTTTTATATTTT
91115 ATTTTTTATATCTTT
1 ATTTTTTATAT-TTT
*
91130 ATTTCTTATTATTTTTT
1 A-TT-TT-TTATATTTT
91147 ATATTTTTATATTTT
1 AT-TTTTTATATTTT
* *
91162 -TTGTTTGTATTTT
1 ATTTTTTATATTTT
91175 AT
1 AT
91177 AAACTAAATT
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
13 10 0.20
14 12 0.24
15 11 0.22
16 5 0.10
17 7 0.14
18 5 0.10
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.74
Consensus pattern (14 bp):
ATTTTTTATATTTT
Found at i:91207 original size:18 final size:18
Alignment explanation
Indices: 91187--91225 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
91177 AAACTAAATT
91187 TTTTTCT-A-TTTTGTCA
1 TTTTTCTCATTTTTGTCA
*
91203 TTTTTCTCATTTTTTTCA
1 TTTTTCTCATTTTTGTCA
91221 TTTTT
1 TTTTT
91226 ATTAGTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 7 0.35
17 1 0.05
18 12 0.60
ACGTcount: A:0.10, C:0.13, G:0.03, T:0.74
Consensus pattern (18 bp):
TTTTTCTCATTTTTGTCA
Found at i:91478 original size:19 final size:19
Alignment explanation
Indices: 91454--91496 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
91444 GGTTTGTCTC
*
91454 ATTTTTGTT-GTCATTTTTT
1 ATTTTTGTTGGT-ATTTTCT
*
91473 ATTTTTTTTGGTATTTTCT
1 ATTTTTGTTGGTATTTTCT
91492 ATTTT
1 ATTTT
91497 ATTTTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.12, C:0.05, G:0.09, T:0.74
Consensus pattern (19 bp):
ATTTTTGTTGGTATTTTCT
Found at i:91540 original size:14 final size:14
Alignment explanation
Indices: 91518--91551 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
91508 TCTTCAGTAA
*
91518 TTCTTTTTTT-TCT
1 TTCTTTTTTTCTTT
91531 TTCTTTTTTTCTTT
1 TTCTTTTTTTCTTT
91545 TTCTTTT
1 TTCTTTT
91552 AACTTATTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (14 bp):
TTCTTTTTTTCTTT
Found at i:91855 original size:15 final size:16
Alignment explanation
Indices: 91835--91875 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
91825 GTCTTTTTAT
91835 ATTTTTTATTATC-TA
1 ATTTTTTATTATCTTA
*
91850 ATTTTTTATTTTCTTA
1 ATTTTTTATTATCTTA
*
91866 GTTTTTTATT
1 ATTTTTTATT
91876 TTTTTAGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 12 0.52
16 11 0.48
ACGTcount: A:0.20, C:0.05, G:0.02, T:0.73
Consensus pattern (16 bp):
ATTTTTTATTATCTTA
Found at i:91870 original size:16 final size:16
Alignment explanation
Indices: 91836--91893 Score: 73
Period size: 16 Copynumber: 3.7 Consensus size: 16
91826 TCTTTTTATA
* *
91836 TTTTTTATTATC-TAA
1 TTTTTTATTTTCTTAG
91851 TTTTTTATTTTCTTAG
1 TTTTTTATTTTCTTAG
*
91867 TTTTTTATTTTTTTAG
1 TTTTTTATTTTCTTAG
*
91883 TATTTTATTTT
1 TTTTTTATTTT
91894 ATTTTATTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 11 0.29
16 27 0.71
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.76
Consensus pattern (16 bp):
TTTTTTATTTTCTTAG
Found at i:91904 original size:11 final size:11
Alignment explanation
Indices: 91868--91961 Score: 59
Period size: 11 Copynumber: 8.4 Consensus size: 11
91858 TTTTCTTAGT
91868 TTTTTATTTT-
1 TTTTTATTTTA
*
91878 TTTAGTATTTTA
1 TTT-TTATTTTA
91890 -TTTTATTTTA
1 TTTTTATTTTA
*
91900 TTTTTCTTTTA
1 TTTTTATTTTA
*
91911 TATTAATATTTT-
1 T-TT-TTATTTTA
* * *
91923 CTTCTAATTTA
1 TTTTTATTTTA
*
91934 TTTTTCTTTTA
1 TTTTTATTTTA
91945 TTTTTTATTTATA
1 -TTTTTATTT-TA
91958 TTTT
1 TTTT
91962 AAAAAAAATT
Statistics
Matches: 63, Mismatches: 13, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
10 15 0.24
11 27 0.43
12 14 0.22
13 7 0.11
ACGTcount: A:0.19, C:0.04, G:0.01, T:0.76
Consensus pattern (11 bp):
TTTTTATTTTA
Found at i:91921 original size:34 final size:33
Alignment explanation
Indices: 91868--91963 Score: 104
Period size: 34 Copynumber: 2.9 Consensus size: 33
91858 TTTTCTTAGT
* * *
91868 TTTTTATTTT-TTTAGTATTTTATTTTATTTTA
1 TTTTTCTTTTATTTAATATTTTATTTTAATTTA
* *
91900 TTTTTCTTTTATATTAATATTTTCTTCTAATTTA
1 TTTTTCTTTTAT-TTAATATTTTATTTTAATTTA
**
91934 TTTTTCTTTTATTTTTTATTTATATTTTAA
1 TTTTTCTTTTATTTAATATTT-TATTTTAA
91964 AAAAAATTTC
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
32 9 0.17
33 8 0.15
34 35 0.67
ACGTcount: A:0.21, C:0.04, G:0.01, T:0.74
Consensus pattern (33 bp):
TTTTTCTTTTATTTAATATTTTATTTTAATTTA
Found at i:92512 original size:181 final size:181
Alignment explanation
Indices: 92010--92568 Score: 424
Period size: 173 Copynumber: 3.1 Consensus size: 181
92000 TTTTTTCAAC
* * * * * * ** ** *
92010 TTATTCGATAAACAAATT-TTTTTTTAATTCTCTTACTCATTAATTTTCAGAATGTTAATAAATT
1 TTATTCAATAAACAAATTAATTTTTTAAATCTTTTACTTATTAACTGGCTTAATATTAATAAATT
** * * * * * * * * *
92074 AGTATTATTTTACTTCAGATAAATTTGTATGAACT-GAAATAATTCTTTTATTACAAAAGAAAAT
66 AACATTATTTTAATCCAAATAAACTTGTATGAA-TAGAAACAATTATTTTATGACAAAACAAAAA
** * * * * * * * * * * *
92138 GTCATAATAATTTAAAATAGATAATTATTTAAATGGTCATCACTATTTGAAC
130 GTCATAGCAAGTTCAAATAAAAAATTACTCAAATAGTCATAACGATTTAAAA
* * * *
92190 TTATTTC-GTAAACATATTTA-TTTTTAAATCTTTTACTTATCAA-------AATATTAATAAAT
1 TTA-TTCAATAAACAAATTAATTTTTTAAATCTTTTACTTATTAACTGGCTTAATATTAATAAAT
* *
92246 TAATATTATTTTAATCCAAATAAACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAA
65 TAACATTATTTTAATCCAAATAAACTTGTATGAATAGAAACAATTATTTTATGACAAAACAAAAA
* *
92311 GTCATAGCAAGTTGAAATAAAAAATTACTCAAATAGTCATAACGATTTTAAAC
130 GTCATAGCAAGTTCAAATAAAAAATTACTCAAATAGTCATAACGA-TTTAAAA
* * *
92364 TTGTTCAGTAAACAAATTTATTTTTTAAATCTTTTACTTATTAACTGGCTTAATATTAATAAATT
1 TTATTCAATAAACAAATTAATTTTTTAAATCTTTTACTTATTAACTGGCTTAATATTAATAAATT
** * * * * * *
92429 TGCATTATTTT-ATTCGAATAAGCTTGTATGAATAGAAA-ATTTTATTTTTTGACAAAACAAAAG
66 AACATTATTTTAATCCAAATAAACTTGTATGAATAGAAACA-ATTATTTTATGACAAAACAAAAA
* ** * * ** **
92492 GTTATAGTGATTTCAAATAAATAATTGTTCAAATAGTCATAATTATTTAAAA
130 GTCATAGCAAGTTCAAATAAAAAATTACTCAAATAGTCATAACGATTTAAAA
92544 TTATTCAATAAACAAATTAATTTTT
1 TTATTCAATAAACAAATTAATTTTT
92569 AGATTATTAG
Statistics
Matches: 308, Mismatches: 57, Indels: 28
0.78 0.15 0.07
Matches are distributed among these distances:
172 1 0.00
173 102 0.33
174 20 0.06
175 22 0.07
180 60 0.19
181 81 0.26
182 22 0.07
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.42
Consensus pattern (181 bp):
TTATTCAATAAACAAATTAATTTTTTAAATCTTTTACTTATTAACTGGCTTAATATTAATAAATT
AACATTATTTTAATCCAAATAAACTTGTATGAATAGAAACAATTATTTTATGACAAAACAAAAAG
TCATAGCAAGTTCAAATAAAAAATTACTCAAATAGTCATAACGATTTAAAA
Found at i:95829 original size:22 final size:23
Alignment explanation
Indices: 95790--95832 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
95780 GTAAATAAAT
*
95790 TTAATTTTTAAATCTATTATTTA
1 TTAATTTTTAAATATATTATTTA
95813 TTAATTTTTAAA-ATATTATT
1 TTAATTTTTAAATATATTATT
95833 AAATTAGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.60
Consensus pattern (23 bp):
TTAATTTTTAAATATATTATTTA
Found at i:95838 original size:23 final size:24
Alignment explanation
Indices: 95785--95838 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
95775 ATTAGGTAAA
*
95785 TAAATTTAATTTTTAAATCTATTAT
1 TAAA-TTAATTTTTAAATATATTAT
*
95810 T-TATTAATTTTTAAA-ATATTAT
1 TAAATTAATTTTTAAATATATTAT
95832 TAAATTA
1 TAAATTA
95839 GTATTATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
22 7 0.28
23 16 0.64
24 1 0.04
25 1 0.04
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.56
Consensus pattern (24 bp):
TAAATTAATTTTTAAATATATTAT
Found at i:96115 original size:18 final size:19
Alignment explanation
Indices: 96070--96119 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 19
96060 CAAATTATAC
96070 TATTTAT-TAATATTAATA
1 TATTTATATAATATTAATA
* *
96088 TAATTA-ATAATTTTAAT-
1 TATTTATATAATATTAATA
96105 TATTTATATAA-ATTA
1 TATTTATATAATATTA
96120 CAGTAACAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
17 8 0.31
18 18 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
TATTTATATAATATTAATA
Found at i:96468 original size:25 final size:25
Alignment explanation
Indices: 96435--96507 Score: 82
Period size: 25 Copynumber: 3.0 Consensus size: 25
96425 TATATTATAT
96435 TTAATATATAATTATTAAATATAAA
1 TTAATATATAATTATTAAATATAAA
96460 TTAATATATAATTA-TAAAT-T-AA
1 TTAATATATAATTATTAAATATAAA
*
96482 -TAATTATTATAATTAATTAATTATAA
1 TTAA-TA-TATAATT-ATTAAATATAA
96508 TAAATCAGTA
Statistics
Matches: 41, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
21 3 0.07
22 4 0.10
23 8 0.20
24 6 0.15
25 18 0.44
26 1 0.02
27 1 0.02
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (25 bp):
TTAATATATAATTATTAAATATAAA
Found at i:96475 original size:18 final size:17
Alignment explanation
Indices: 96454--96507 Score: 69
Period size: 18 Copynumber: 3.3 Consensus size: 17
96444 AATTATTAAA
96454 TATAAATTAATATATAAT
1 TATAAATTAATA-ATAAT
*
96472 TATAAATTAATAATTAT
1 TATAAATTAATAATAAT
96489 TAT-AATTAAT--TAAT
1 TATAAATTAATAATAAT
96503 TATAA
1 TATAA
96508 TAAATCAGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
14 6 0.18
15 1 0.03
16 7 0.21
17 7 0.21
18 12 0.36
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
TATAAATTAATAATAAT
Found at i:96486 original size:14 final size:14
Alignment explanation
Indices: 96467--96507 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 14
96457 AAATTAATAT
96467 ATAATTATAAATTA
1 ATAATTATAAATTA
96481 ATAATTATTATAATTA
1 ATAATTA-TA-AATTA
96497 ATTAATTATAA
1 A-TAATTATAA
96508 TAAATCAGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 7 0.29
15 3 0.12
16 8 0.33
17 6 0.25
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
ATAATTATAAATTA
Found at i:96492 original size:17 final size:17
Alignment explanation
Indices: 96454--96512 Score: 75
Period size: 17 Copynumber: 3.4 Consensus size: 17
96444 AATTATTAAA
*
96454 TATAAATTAATATATAAT
1 TATAAATTAATA-ATTAT
96472 TATAAATTAATAATTAT
1 TATAAATTAATAATTAT
96489 TAT-AATTAATTAATTAT
1 TATAAATTAA-TAATTAT
*
96506 AATAAAT
1 TATAAAT
96513 CAGTATTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
16 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
TATAAATTAATAATTAT
Found at i:96508 original size:14 final size:14
Alignment explanation
Indices: 96413--96508 Score: 56
Period size: 14 Copynumber: 6.6 Consensus size: 14
96403 ACTATATAAT
*
96413 ATTATAATTAAATA
1 ATTATAATTAATTA
*
96427 TATTATATTTAA-T-
1 -ATTATAATTAATTA
96440 A-TATAATT-ATTA
1 ATTATAATTAATTA
*
96452 AATATAAATTAATATATA
1 ATTAT-AATT-A-AT-TA
*
96470 ATTATAAATTAATAATT
1 ATTAT-AATTAAT--TA
96487 ATTATAATTAATTA
1 ATTATAATTAATTA
96501 ATTATAAT
1 ATTATAAT
96509 AAATCAGTAT
Statistics
Matches: 67, Mismatches: 5, Indels: 19
0.74 0.05 0.21
Matches are distributed among these distances:
10 1 0.01
11 7 0.10
12 2 0.03
13 3 0.04
14 14 0.21
15 10 0.15
16 9 0.13
17 10 0.15
18 11 0.16
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
ATTATAATTAATTA
Found at i:96599 original size:9 final size:10
Alignment explanation
Indices: 96567--96606 Score: 50
Period size: 9 Copynumber: 4.2 Consensus size: 10
96557 ATTTTATCAA
96567 ATAATATATT
1 ATAATATATT
96577 A-AATATATT
1 ATAATATATT
96586 AATAATA-ATT
1 -ATAATATATT
96596 ATAATA-ATT
1 ATAATATATT
96605 AT
1 AT
96607 TTATAAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
9 19 0.68
10 5 0.18
11 4 0.14
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (10 bp):
ATAATATATT
Found at i:96627 original size:56 final size:57
Alignment explanation
Indices: 96416--96628 Score: 137
Period size: 56 Copynumber: 3.7 Consensus size: 57
96406 ATATAATATT
* *
96416 ATAATTA-AATATATTATATT-TAATATATAATTATTA-AATATAAATT-AATATA-TAATT
1 ATAATTATAATA-ATTAT-TTATAATAT-TAATTATCATAATAT--ATTAAATATATTAATA
* * * * *
96473 ATAAAT-TAATAATTA-TTATAATTAATTAATTATAATAAATCAGTATTAAAATTTTTTATTA
1 ATAATTATAATAATTATTTATAA-T-ATTAATTATCAT-AAT-A-TATT-AAATATATTAATA
96534 ATAA--AT-ATAATTA--TATAATATTAATTTTATCAAATAATATATTAAATATATTAATA
1 ATAATTATAATAATTATTTATAATATTAA--TTATC--ATAATATATTAAATATATTAATA
96590 ATAATTATAATAATTATTTATAA-ATTAATTATCATAATA
1 ATAATTATAATAATTATTTATAATATTAATTATCATAATA
96629 GTTATCATTA
Statistics
Matches: 125, Mismatches: 10, Indels: 43
0.70 0.06 0.24
Matches are distributed among these distances:
54 2 0.02
55 3 0.02
56 38 0.30
57 16 0.13
58 23 0.18
59 18 0.14
60 13 0.10
61 12 0.10
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (57 bp):
ATAATTATAATAATTATTTATAATATTAATTATCATAATATATTAAATATATTAATA
Found at i:96813 original size:14 final size:14
Alignment explanation
Indices: 96785--96832 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
96775 TACTTTTTAA
96785 TAATATAAAT-TAAT
1 TAAT-TAAATATAAT
*
96799 TAATTAACT-TAAAT
1 TAATTAAATAT-AAT
96813 TAATTAAATATAAT
1 TAATTAAATATAAT
96827 TAATTA
1 TAATTA
96833 TTATTCATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
13 5 0.17
14 24 0.80
15 1 0.03
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (14 bp):
TAATTAAATATAAT
Found at i:96879 original size:42 final size:42
Alignment explanation
Indices: 96817--96934 Score: 115
Period size: 42 Copynumber: 2.9 Consensus size: 42
96807 TTAAATTAAT
*
96817 TAAA-TATAAT-TAATTATTATTCATATAATATTAATTATATGA
1 TAAATTATAATATAA-T-TTATTAATATAATATTAATTATATGA
*
96859 TAAATTATAATATAATTTATTAATAT-AT-TTAATATTATATTA
1 TAAATTATAATATAATTTATTAATATAATATT-A-ATTATATGA
*
96901 T-AATTATAATAT-A-TTAATAATATAATTATTAATT
1 TAAATTATAATATAATTTATTAATATAA-TATTAATT
96935 TGAATAATTA
Statistics
Matches: 66, Mismatches: 3, Indels: 16
0.78 0.04 0.19
Matches are distributed among these distances:
39 9 0.14
40 7 0.11
41 16 0.24
42 24 0.36
43 7 0.11
44 3 0.05
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (42 bp):
TAAATTATAATATAATTTATTAATATAATATTAATTATATGA
Found at i:96886 original size:30 final size:29
Alignment explanation
Indices: 96839--96926 Score: 94
Period size: 30 Copynumber: 3.1 Consensus size: 29
96829 ATTATTATTC
96839 ATATAA-TATTAATTATATGATAA-ATTATA
1 ATATAATTATTAA-TATAT-ATAATATTATA
*
96868 ATATAATTTATTAATATATTTAATATTATA
1 ATATAA-TTATTAATATATATAATATTATA
* *
96898 TTATAATTA-TAATATAT-TAATAATATA
1 ATATAATTATTAATATATATAATATTATA
96925 AT
1 AT
96927 TATTAATTTG
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
27 10 0.19
28 8 0.15
29 12 0.23
30 16 0.31
31 6 0.12
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (29 bp):
ATATAATTATTAATATATATAATATTATA
Found at i:96908 original size:11 final size:11
Alignment explanation
Indices: 96821--96929 Score: 52
Period size: 11 Copynumber: 9.8 Consensus size: 11
96811 ATTAATTAAA
96821 TATAATTA-AT
1 TATAATTATAT
*
96831 TATTATTCATAT
1 TATAATT-ATAT
96843 AATATTAATTATAT
1 --TA-TAATTATAT
* *
96857 GATAAATTATAA
1 TAT-AATTATAT
96869 TATAATT-TA-
1 TATAATTATAT
96878 T-TAA-TATAT
1 TATAATTATAT
96887 T-TAATATTATAT
1 TAT-A-ATTATAT
*
96899 TATAATTATAA
1 TATAATTATAT
*
96910 TAT-ATTAATAA
1 TATAATT-ATAT
96921 TATAATTAT
1 TATAATTAT
96930 TAATTTGAAT
Statistics
Matches: 79, Mismatches: 6, Indels: 27
0.71 0.05 0.24
Matches are distributed among these distances:
7 1 0.01
8 5 0.06
9 3 0.04
10 12 0.15
11 25 0.32
12 22 0.28
13 1 0.01
14 6 0.08
15 4 0.05
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (11 bp):
TATAATTATAT
Found at i:97208 original size:24 final size:24
Alignment explanation
Indices: 97180--97228 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 24
97170 ATGAACTAAG
97180 ATAATTGTAATAAT-TATTA-TTATA
1 ATAATT-T-ATAATATATTATTTATA
97204 ATAATTTATAATATATTATTTATA
1 ATAATTTATAATATATTATTTATA
97228 A
1 A
97229 CACGTTCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 5 0.22
23 6 0.26
24 12 0.52
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (24 bp):
ATAATTTATAATATATTATTTATA
Found at i:97335 original size:15 final size:15
Alignment explanation
Indices: 97300--97350 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 15
97290 AAATTAATAT
97300 AATATAACTATATATTA
1 AATATAA-TATA-ATTA
97317 AATTATAATATAATT-
1 AA-TATAATATAATTA
*
97332 AAT-TAATATAATTG
1 AATATAATATAATTA
97346 AATAT
1 AATAT
97351 TAAGCTATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
13 10 0.32
14 4 0.13
15 3 0.10
16 3 0.10
17 6 0.19
18 5 0.16
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (15 bp):
AATATAATATAATTA
Found at i:97340 original size:26 final size:25
Alignment explanation
Indices: 97282--97340 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 25
97272 ATTTACTATT
97282 TTAATATTAAATTAATATAATATAA
1 TTAATATTAAATTAATATAATATAA
*
97307 CTATATATTAAATTATAATATAAT-TAA
1 TTA-ATATTAAA-T-TAATATAATATAA
97334 TTAATAT
1 TTAATAT
97341 AATTGAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
25 2 0.07
26 12 0.41
27 6 0.21
28 9 0.31
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (25 bp):
TTAATATTAAATTAATATAATATAA
Found at i:97472 original size:9 final size:9
Alignment explanation
Indices: 97458--97516 Score: 64
Period size: 9 Copynumber: 6.2 Consensus size: 9
97448 TATTTATTTT
97458 AAATAATTA
1 AAATAATTA
*
97467 AAATAATAA
1 AAATAATTA
97476 TAAATAATTA
1 -AAATAATTA
*
97486 AAATAAATA
1 AAATAATTA
*
97495 TAATAATTA
1 AAATAATTA
97504 TAAATAACTTA
1 -AAATAA-TTA
97515 AA
1 AA
97517 TATATATTAG
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
9 23 0.56
10 15 0.37
11 3 0.07
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (9 bp):
AAATAATTA
Found at i:97481 original size:19 final size:18
Alignment explanation
Indices: 97457--97510 Score: 74
Period size: 19 Copynumber: 2.9 Consensus size: 18
97447 TTATTTATTT
97457 TAAATAATTAAAATAATAA
1 TAAATAATTAAAATAA-AA
97476 TAAATAATTAAAAT-AAA
1 TAAATAATTAAAATAAAA
97493 TATAATAATTATAAATAA
1 TA-AATAATTA-AAATAA
97511 CTTAAATATA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.12
18 9 0.28
19 18 0.56
20 1 0.03
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAATAATTAAAATAAAA
Found at i:97490 original size:28 final size:29
Alignment explanation
Indices: 97458--97525 Score: 84
Period size: 28 Copynumber: 2.3 Consensus size: 29
97448 TATTTATTTT
97458 AAATAATTAAAATAATAATAAATAA-TTA
1 AAATAATTAAAATAATAATAAATAACTTA
* * *
97486 AAATAAATATAATAATTATAAATAACTTA
1 AAATAATTAAAATAATAATAAATAACTTA
97515 AATATATATTA
1 AA-ATA-ATTA
97526 GTTATTAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 22 0.67
29 5 0.15
30 3 0.09
31 3 0.09
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.35
Consensus pattern (29 bp):
AAATAATTAAAATAATAATAAATAACTTA
Found at i:97518 original size:19 final size:17
Alignment explanation
Indices: 97456--97518 Score: 72
Period size: 19 Copynumber: 3.4 Consensus size: 17
97446 ATTATTTATT
97456 TTAAATAATTAAAATAA
1 TTAAATAATTAAAATAA
97473 TAATAAATAATTAAAATAA
1 T--TAAATAATTAAAATAA
*
97492 ATATAATAATTATAAATAA
1 TTA-AATAATTA-AAATAA
97511 CTTAAATA
1 -TTAAATA
97519 TATATTAGTT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
17 3 0.08
18 8 0.21
19 26 0.67
20 2 0.05
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (17 bp):
TTAAATAATTAAAATAA
Found at i:97705 original size:23 final size:25
Alignment explanation
Indices: 97679--97741 Score: 69
Period size: 28 Copynumber: 2.5 Consensus size: 25
97669 GTATTTTAAC
*
97679 TATATTAATAT-TAATT-ATAGTAT
1 TATATTAATATATAATTAATAATAT
97702 TATATTTAAATTATATAATTAATAATAT
1 TATA-TT-AA-TATATAATTAATAATAT
97730 TAT-TTAATATAT
1 TATATTAATATAT
97742 TACTAATATA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
23 4 0.12
24 7 0.21
25 4 0.12
26 5 0.15
27 5 0.15
28 9 0.26
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (25 bp):
TATATTAATATATAATTAATAATAT
Found at i:98420 original size:27 final size:27
Alignment explanation
Indices: 98390--98457 Score: 68
Period size: 27 Copynumber: 2.5 Consensus size: 27
98380 CCAATATTAG
98390 TAATAATTAATTGTATAT-TAATAAATA
1 TAATAATTAATT-TATATATAATAAATA
* * *
98417 TAATATATTAGTTTATATATTATAATTA
1 TAATA-ATTAATTTATATATAATAAATA
98445 -AATAATATAATTT
1 TAATAAT-TAATTT
98458 CAATTAGTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
26 2 0.06
27 19 0.56
28 13 0.38
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (27 bp):
TAATAATTAATTTATATATAATAAATA
Found at i:98581 original size:17 final size:17
Alignment explanation
Indices: 98471--98581 Score: 71
Period size: 17 Copynumber: 6.6 Consensus size: 17
98461 TTAGTTACAC
98471 TATTAATAA-TA-ATAA
1 TATTAATAATTATATAA
98486 TTATTAAATAATTATA-AA
1 -TATT-AATAATTATATAA
*
98504 TATT-ATATATTATACTTA
1 TATTAATA-ATTATA-TAA
98522 TATT--TAGA--ATATAA
1 TATTAATA-ATTATATAA
98536 -ATTAATAAATTATATAA
1 TATTAAT-AATTATATAA
98553 TTAGTT-ATAATTATATAA
1 -TA-TTAATAATTATATAA
98571 TATTAATAATT
1 TATTAATAATT
98582 GATTTATTGT
Statistics
Matches: 77, Mismatches: 3, Indels: 29
0.71 0.03 0.27
Matches are distributed among these distances:
13 3 0.04
14 2 0.03
15 8 0.10
16 13 0.17
17 26 0.34
18 19 0.25
19 4 0.05
20 2 0.03
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.47
Consensus pattern (17 bp):
TATTAATAATTATATAA
Found at i:98733 original size:21 final size:21
Alignment explanation
Indices: 98709--98813 Score: 50
Period size: 21 Copynumber: 4.6 Consensus size: 21
98699 TTATTTTTTT
98709 ATATTTTATAATTATAATTTA
1 ATATTTTATAATTATAATTTA
***
98730 ATATAAAATAA-TATTAATTTA
1 ATATTTTATAATTA-TAATTTA
*
98751 TTATATTTATAAATTATATATAATTA
1 ATAT-TTTAT-AATTATA-AT--TTA
* *
98777 TTAATTTATAATCTTATAATTATA
1 ATATTTTATAA--TTATAATT-TA
*
98801 ATATATTAATAAT
1 ATAT-TTTATAAT
98814 AATGTGATGT
Statistics
Matches: 62, Mismatches: 11, Indels: 20
0.67 0.12 0.22
Matches are distributed among these distances:
20 2 0.03
21 18 0.29
22 2 0.03
23 6 0.10
24 10 0.16
25 13 0.21
26 11 0.18
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (21 bp):
ATATTTTATAATTATAATTTA
Found at i:98761 original size:27 final size:26
Alignment explanation
Indices: 98731--98787 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
98721 TATAATTTAA
98731 TATAAAATAATAT-TAATTTATTATATT
1 TATAAAATAATATATAA-TTATTA-ATT
*
98758 TAT-AAATTATATATAATTATTAATT
1 TATAAAATAATATATAATTATTAATT
98783 TATAA
1 TATAA
98788 TCTTATAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
25 6 0.22
26 15 0.56
27 6 0.22
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (26 bp):
TATAAAATAATATATAATTATTAATT
Found at i:99316 original size:15 final size:15
Alignment explanation
Indices: 99280--99373 Score: 54
Period size: 14 Copynumber: 6.3 Consensus size: 15
99270 AATATTAAAA
* *
99280 TATATTATCTAATAA
1 TATATTATATAATAT
99295 TAT-TTATATAATAT
1 TATATTATATAATAT
*
99309 TATATTATTTAATTAAT
1 TATATTATATAA-T-AT
*
99326 GAATATT-TA-AATAT
1 -TATATTATATAATAT
*
99340 TACTATTA-ATTATATT
1 TA-TATTATATAATA-T
*
99356 TATATTAAAT-ATAT
1 TATATTATATAATAT
99370 TATA
1 TATA
99374 ATGAATTACA
Statistics
Matches: 63, Mismatches: 7, Indels: 19
0.71 0.08 0.21
Matches are distributed among these distances:
13 1 0.02
14 24 0.38
15 22 0.35
16 8 0.13
17 3 0.05
18 5 0.08
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.52
Consensus pattern (15 bp):
TATATTATATAATAT
Found at i:99331 original size:57 final size:56
Alignment explanation
Indices: 99261--99372 Score: 140
Period size: 57 Copynumber: 2.0 Consensus size: 56
99251 AGATTATATA
*
99261 TAATTAAGTAATATTAAAATA-TATTATCTAATAATATTTATA-TAATATTATATTATT
1 TAATTAAGTAATATTAAAATATTACTAT-TAATAATATTTATATTAA-A-TATATTATT
* *
99318 TAATTAA-TGAATATTTAAATATTACTATTAATTATATTTATATTAAATATATTAT
1 TAATTAAGT-AATATTAAAATATTACTATTAATAATATTTATATTAAATATATTAT
99373 AATGAATTAC
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
56 9 0.18
57 32 0.65
58 8 0.16
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (56 bp):
TAATTAAGTAATATTAAAATATTACTATTAATAATATTTATATTAAATATATTATT
Found at i:99401 original size:20 final size:20
Alignment explanation
Indices: 99337--99415 Score: 56
Period size: 20 Copynumber: 4.0 Consensus size: 20
99327 AATATTTAAA
*
99337 TATTACTAT-TAATTATATTT
1 TATTACAATATAATTATA-TT
*
99357 ATATTA-AATAT-ATTATAATG
1 -TATTACAATATAATTAT-ATT
*
99377 AATTACAATATAATTATATT
1 TATTACAATATAATTATATT
* * *
99397 TATTATAATGTAATAATAT
1 TATTACAATATAATTATAT
99416 AAATTATAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 9
0.73 0.13 0.14
Matches are distributed among these distances:
19 4 0.09
20 30 0.65
21 12 0.26
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (20 bp):
TATTACAATATAATTATATT
Found at i:99686 original size:21 final size:21
Alignment explanation
Indices: 99616--99687 Score: 58
Period size: 21 Copynumber: 3.4 Consensus size: 21
99606 ATAGTTATAA
*
99616 TAATAA-ATATTATTAGTATTAT
1 TAATAATA-ATTATTA-AATTAT
* * * *
99638 T-AGAATAATTATCAAATAAC
1 TAATAATAATTATTAAATTAT
*
99658 TAAAAATAATTATTAAATTAT
1 TAATAATAATTATTAAATTAT
99679 TAATAATAA
1 TAATAATAA
99688 CAAATAACTT
Statistics
Matches: 38, Mismatches: 10, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
20 4 0.11
21 32 0.84
22 2 0.05
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (21 bp):
TAATAATAATTATTAAATTAT
Found at i:99692 original size:38 final size:39
Alignment explanation
Indices: 99641--99719 Score: 97
Period size: 38 Copynumber: 2.1 Consensus size: 39
99631 GTATTATTAG
* * *
99641 AATAATTATCAAATAACTAAAAATAATTATTAAATTATT
1 AATAATTAACAAATAACTAAAAACAATTATTAAATAATT
* * *
99680 AATAA-TAACAAATAACTTATAACAATTATTACATAATT
1 AATAATTAACAAATAACTAAAAACAATTATTAAATAATT
99718 AA
1 AA
99720 ATTATATAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
38 29 0.85
39 5 0.15
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (39 bp):
AATAATTAACAAATAACTAAAAACAATTATTAAATAATT
Found at i:100057 original size:25 final size:22
Alignment explanation
Indices: 100012--100072 Score: 61
Period size: 25 Copynumber: 2.6 Consensus size: 22
100002 ACTAAACAAT
100012 TATAT-ATTAATAAATAAAATAAC
1 TATATAATT-ATAAATAAAAT-AC
*
100035 TATATAATTATAAATTAATAATAT
1 TATATAATTATAAA-TAA-AATAC
100059 TATAATAATTATAA
1 TAT-ATAATTATAA
100073 TCATTTAGCA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
23 10 0.30
24 10 0.30
25 13 0.39
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (22 bp):
TATATAATTATAAATAAAATAC
Found at i:100147 original size:24 final size:24
Alignment explanation
Indices: 100111--100178 Score: 72
Period size: 22 Copynumber: 3.0 Consensus size: 24
100101 ATTAAAAAAT
100111 ATAA-TAATAAATTATATTTATAAA
1 ATAATTAAT-AATTATATTTATAAA
100135 ATAATTAATAA-T-TATTTATAAA
1 ATAATTAATAATTATATTTATAAA
* * *
100157 TTAATT-ATAATAATAGTTATAA
1 ATAATTAATAATTATATTTATAA
100179 TCAGTACCAT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
21 4 0.11
22 15 0.39
23 9 0.24
24 6 0.16
25 4 0.11
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.44
Consensus pattern (24 bp):
ATAATTAATAATTATATTTATAAA
Found at i:100164 original size:11 final size:11
Alignment explanation
Indices: 100107--100166 Score: 50
Period size: 11 Copynumber: 5.2 Consensus size: 11
100097 TAATATTAAA
*
100107 AAATATAATAAT
1 AAAT-TAATTAT
100119 AAATTATATTTAT
1 AAATTA-A-TTAT
*
100132 AAAATAATTA-
1 AAATTAATTAT
*
100142 ATAATTATTTAT
1 A-AATTAATTAT
100154 AAATTAATTAT
1 AAATTAATTAT
100165 AA
1 AA
100167 TAATAGTTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
10 1 0.03
11 23 0.59
12 7 0.18
13 8 0.21
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (11 bp):
AAATTAATTAT
Found at i:100274 original size:3 final size:3
Alignment explanation
Indices: 100261--100325 Score: 51
Period size: 3 Copynumber: 21.3 Consensus size: 3
100251 GGATAAAACC
* * ** *
100261 ATT ACT ATT ATT ATT ATT A-T ATT ATT ATT ATT TTT CAAG ATT ATA
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT
*
100306 ATT ATT ATT AATT AAT ATT A
1 ATT ATT ATT -ATT ATT ATT A
100326 CAATGTTTAT
Statistics
Matches: 47, Mismatches: 12, Indels: 6
0.72 0.18 0.09
Matches are distributed among these distances:
2 2 0.04
3 42 0.89
4 3 0.06
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (3 bp):
ATT
Found at i:100285 original size:14 final size:15
Alignment explanation
Indices: 100261--100292 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
100251 GGATAAAACC
100261 ATTACTATTATTATT
1 ATTACTATTATTATT
100276 ATTA-TATTATTATT
1 ATTACTATTATTATT
100290 ATT
1 ATT
100293 TTTCAAGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (15 bp):
ATTACTATTATTATT
Found at i:100325 original size:22 final size:21
Alignment explanation
Indices: 100267--100338 Score: 62
Period size: 22 Copynumber: 3.5 Consensus size: 21
100257 AACCATTACT
*
100267 ATTATTATTATT-ATATTATT
1 ATTATTATTATTAATATTATA
* *
100287 ATTATT-TT-TCAAGATTATA
1 ATTATTATTATTAATATTATA
*
100306 ATTATTATTAATTAATATTACA
1 ATTATTATT-ATTAATATTATA
100328 ATGT-TTATTAT
1 AT-TATTATTAT
100339 ACTTTATAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
18 1 0.02
19 14 0.34
20 8 0.20
21 2 0.05
22 15 0.37
23 1 0.02
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (21 bp):
ATTATTATTATTAATATTATA
Found at i:101209 original size:27 final size:28
Alignment explanation
Indices: 101165--101223 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 28
101155 AGAAAGTAAA
* ** *
101165 AAAATGAAAATACTAAA-TATATAAAAT
1 AAAATCAAAATAAAAAATTATAAAAAAT
*
101192 AAAATCAAAATAAAAAATTTTAAAAAAT
1 AAAATCAAAATAAAAAATTATAAAAAAT
101220 AAAA
1 AAAA
101224 AGGGATGATA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
27 14 0.54
28 12 0.46
ACGTcount: A:0.71, C:0.03, G:0.02, T:0.24
Consensus pattern (28 bp):
AAAATCAAAATAAAAAATTATAAAAAAT
Found at i:101608 original size:90 final size:90
Alignment explanation
Indices: 101455--101634 Score: 351
Period size: 90 Copynumber: 2.0 Consensus size: 90
101445 ATTTCTTCTT
101455 AACTTCTTTTTTCCTTCTGGTTATTTTATTGCCAAAATCTCATCTACTTTCATGTACATGTTATA
1 AACTTCTTTTTTCCTTCTGGTTATTTTATTGCCAAAATCTCATCTACTTTCATGTACATGTTATA
101520 CTCATTTCTCTACTTGTGAAGTATG
66 CTCATTTCTCTACTTGTGAAGTATG
*
101545 AACTTCTTTTTTCCTTCTGGTTATTTTTTTGCCAAAATCTCATCTACTTTCATGTACATGTTATA
1 AACTTCTTTTTTCCTTCTGGTTATTTTATTGCCAAAATCTCATCTACTTTCATGTACATGTTATA
101610 CTCATTTCTCTACTTGTGAAGTATG
66 CTCATTTCTCTACTTGTGAAGTATG
101635 GCTTTTCATG
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
90 89 1.00
ACGTcount: A:0.22, C:0.20, G:0.10, T:0.48
Consensus pattern (90 bp):
AACTTCTTTTTTCCTTCTGGTTATTTTATTGCCAAAATCTCATCTACTTTCATGTACATGTTATA
CTCATTTCTCTACTTGTGAAGTATG
Found at i:102350 original size:7 final size:7
Alignment explanation
Indices: 102328--102368 Score: 66
Period size: 7 Copynumber: 6.0 Consensus size: 7
102318 TTTTAAAATC
*
102328 AATTTTA
1 AATTTAA
102335 AATTT-A
1 AATTTAA
102341 AATTTAA
1 AATTTAA
102348 AATTTAA
1 AATTTAA
102355 AATTTAA
1 AATTTAA
102362 AATTTAA
1 AATTTAA
102369 CTTAATAAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 6 0.18
7 27 0.82
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (7 bp):
AATTTAA
Found at i:106733 original size:163 final size:163
Alignment explanation
Indices: 106450--106758 Score: 501
Period size: 163 Copynumber: 1.9 Consensus size: 163
106440 AATAAAACAT
*
106450 AAGTAATATAATCAGAAGCAACCAGTCTGATTTGATCCTTTCATTCTCATTATACTGTAACAAGC
1 AAGTAATATAATCAGAAGAAACCAGTCTGATTTGATCCTTTCATTCTCATTATACTGTAACAAGC
* * * * *
106515 AACCACCTTGAATTGATAGTTTCTGGTCTATCACCGCAGATCCTTTTTATCTCTCATTCTACTAG
66 AACCACCTTGAATTGATACTTTCTGGTCTACCACCACAGAACATTTTTATCTCTCATTCTACTAG
106580 TTCCTTAATGGTTGAAAGTGTTTATAGAATGAC
131 TTCCTTAATGGTTGAAAGTGTTTATAGAATGAC
* * * *
106613 AAGTAATATAATCAGAAGAAACCAGTCTGATTTGATCCTTTCATTCTCGTTATCCTGTAAGAATC
1 AAGTAATATAATCAGAAGAAACCAGTCTGATTTGATCCTTTCATTCTCATTATACTGTAACAAGC
* * *
106678 AACCACCTTGAATTGATACTTTCTGGTTTACCGCCACAGAACATTTTTCTCTCTCATTCTACTAG
66 AACCACCTTGAATTGATACTTTCTGGTCTACCACCACAGAACATTTTTATCTCTCATTCTACTAG
106743 TTCCTTAATGGTTGAA
131 TTCCTTAATGGTTGAA
106759 GGTTTTAACA
Statistics
Matches: 133, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
163 133 1.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (163 bp):
AAGTAATATAATCAGAAGAAACCAGTCTGATTTGATCCTTTCATTCTCATTATACTGTAACAAGC
AACCACCTTGAATTGATACTTTCTGGTCTACCACCACAGAACATTTTTATCTCTCATTCTACTAG
TTCCTTAATGGTTGAAAGTGTTTATAGAATGAC
Done.