Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168485.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_83, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108394
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.24
File 1 of 2
Found at i:2055 original size:26 final size:26
Alignment explanation
Indices: 2012--2063 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
2002 TGGTCAGATA
*
2012 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATAAACTCCGTATGC
*
2038 TTAGACTGGGGATAAACTCCGTATGC
1 TTAGACTGGGAATAAACTCCGTATGC
2064 CCAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCGTATGC
Found at i:2155 original size:184 final size:184
Alignment explanation
Indices: 1801--2164 Score: 410
Period size: 184 Copynumber: 2.0 Consensus size: 184
1791 ATGGTTTGGC
* * *
1801 TACCACAACCCTCGATCCGATCCGATCTTAGATTGAGAATGAACTCCGTATGCTTAGACTGGGGA
1 TACCACAACCCTCGATCCGATCAGATATTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGGA
* * * ** * * *
1866 TGAACTTCATATGCCTAAGTCAACCCATGAAATAAGCGTACGGGCACTCAGCCGACTGAATAGGC
66 TAAACTCCATATGCCCAAGTCAACCCACAAAACAAGCGTACGGGCACTCAGCCGACAGAAGAGGC
* *** *
1931 AGAATGCGCAAGCTGGTGATTGGCCTGATCCCCCCTACGTGCTGCCGATCCTGT
131 AGAATGCGCAAGCTGGGGATCAACCCGATCCCCCCTACGTGCTGCCGATCCTGT
* * * *
1985 TACCATAACCCTCGATCTGGTCAGATATTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGA
1 TACCACAACCCTCGATCCGATCAGATATTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGGA
* * * * * *
2050 TAAACTCCGTATGCCCAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCTGGCCAG-AGAGG
66 TAAACTCCATATGCCCAAGTCAACCCACAAAACAAGCGTACGGGCACTCAGC-CGACAGAAGAGG
* * * *
2114 CATG-ATGCGTAAG-TCGGGGATCAACCCGGTCCCCTCTACGTGCTGTCGATC
130 CA-GAATGCGCAAGCT-GGGGATCAACCCGATCCCCCCTACGTGCTGCCGATC
2165 GCGCTGTGGC
Statistics
Matches: 147, Mismatches: 30, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
183 1 0.01
184 142 0.97
185 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.22
Consensus pattern (184 bp):
TACCACAACCCTCGATCCGATCAGATATTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGGA
TAAACTCCATATGCCCAAGTCAACCCACAAAACAAGCGTACGGGCACTCAGCCGACAGAAGAGGC
AGAATGCGCAAGCTGGGGATCAACCCGATCCCCCCTACGTGCTGCCGATCCTGT
Found at i:2987 original size:26 final size:26
Alignment explanation
Indices: 2943--2995 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2933 TCGATCTGAT
2943 CTTAGACTAGGAATAAACTCCATATG
1 CTTAGACTAGGAATAAACTCCATATG
* * * *
2969 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCATATG
2995 C
1 C
2996 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCATATG
Found at i:3333 original size:26 final size:26
Alignment explanation
Indices: 3297--3349 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3287 CTAGTCCGAT
* *
3297 CTTATACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3323 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3349 C
1 C
3350 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3421 original size:354 final size:354
Alignment explanation
Indices: 2581--3423 Score: 978
Period size: 355 Copynumber: 2.4 Consensus size: 354
2571 GCTACTATCG
* * * * * *
2581 GTCCGATCTTAGACTGGGAATAAACTCTGTAAGCTTAGACTGGGAACGAACCCCATATGCCTGAG
1 GTCCGATCTTAGACTGGGAATAAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
* * * *
2646 TCAACCCATGAAATGAGCGTGA-GGGCGCTTAGCCGGCCGGAGAGGCATAATGCGTAAGCTGAGG
66 TCAACCCATGAAACGAGCGT-ACAGGCGCTTAGCCGGCCGGAGAGGCATAATGCGTAAGCCGGGG
*** * * * ** * *
2710 ATCGGGTCGGTCCCCCTTTATGTACTACCGGTCCCACTACCACAACCGTTGGTCCGGCTGGGGCT
130 ATCGACCCGATCCCCCTCTATGTACTACCGGTCCCACTACCACAACCCTCAGTCCGACTAGGGCT
* ** * ** * * *
2775 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGTGTGCAGGTGCTCAGCCG
195 TAGACATGGAATGAACTCCATATGCCAAAGCCAACCCACAAAACGAGCATACAGGCGCTCAACCG
* *
2840 GCAGGAGAGGTAGAATACGCAAGTCGAGGATCGACCCAGTCCCCCTTACGTGCTACCGATCCTAC
260 GCAGGAGAGGCAGAATACGCAAGTCGAGGATCGACCCAGTCCCCCCTACGTGCTACCGATCCTAC
* *
2905 TGCTGGTCCTACTGCTGCAACCCTCAGTTC
325 TGCTAGTCCTACTGCTGCAACCCTCAGTTA
* * **
2935 GATCTGATCTTAGACTAGGAATAAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
1 G-TCCGATCTTAGACTGGGAATAAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
* * * * *
3000 GTCAACCTATGAAACGAGCGTGCAGGCGCTGAGCTGGCCGGAGAGGCATAATGCGTAAGTCGGGG
65 GTCAACCCATGAAACGAGCGTACAGGCGCTTAGCCGGCCGGAGAGGCATAATGCGTAAGCCGGGG
*
3065 ATCGACCCGATCCCCCTCTATGTGCTACCGGTCCCACTACCACAACCCTCAGTCCGACTAGGGCT
130 ATCGACCCGATCCCCCTCTATGTACTACCGGTCCCACTACCACAACCCTCAGTCCGACTAGGGCT
* * * * *
3130 TAGACATGGAATTAACTTCGTATGCCAAAGCTAACCCACAAAACGAGCATACAGGCGCTCAATCG
195 TAGACATGGAATGAACTCCATATGCCAAAGCCAACCCACAAAACGAGCATACAGGCGCTCAACCG
** * * * * * **
3195 GTC-GGAGAGGCAGAATGTGCTAG-CTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
260 G-CAGGAGAGGCAGAATACGCAAGTC-GAGGATCGACCCAGTCCCCCCTACGTGCTACCGATCCT
*
3258 ACTGCTAGTCCTAC-G-TCGCAACCCTCGGTCTA
323 ACTGCTAGTCCTACTGCT-GCAACCCTCAGT-TA
* *
3290 GTCCGATCTTATACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
1 GTCCGATCTTAGACTGGGAATAAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
* * * ** * *
3355 TCAACCCACGAAACGAACGTACAGGTGCTTAGCCGATCAGAGAGGCA-AGATGTGTAAGCCGGGG
66 TCAACCCATGAAACGAGCGTACAGGCGCTTAGCCGGCCGGAGAGGCATA-ATGCGTAAGCCGGGG
3419 ATCGA
130 ATCGA
3424 TCGAGTGGTA
Statistics
Matches: 406, Mismatches: 76, Indels: 14
0.82 0.15 0.03
Matches are distributed among these distances:
353 2 0.00
354 127 0.31
355 276 0.68
356 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (354 bp):
GTCCGATCTTAGACTGGGAATAAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
TCAACCCATGAAACGAGCGTACAGGCGCTTAGCCGGCCGGAGAGGCATAATGCGTAAGCCGGGGA
TCGACCCGATCCCCCTCTATGTACTACCGGTCCCACTACCACAACCCTCAGTCCGACTAGGGCTT
AGACATGGAATGAACTCCATATGCCAAAGCCAACCCACAAAACGAGCATACAGGCGCTCAACCGG
CAGGAGAGGCAGAATACGCAAGTCGAGGATCGACCCAGTCCCCCCTACGTGCTACCGATCCTACT
GCTAGTCCTACTGCTGCAACCCTCAGTTA
Found at i:3883 original size:45 final size:45
Alignment explanation
Indices: 3834--3984 Score: 149
Period size: 45 Copynumber: 3.4 Consensus size: 45
3824 GTATGGGCGC
* *
3834 TTGCCTCGACCACCATCGACACAAGCTGGGCCCTGGTGCAGGTGG
1 TTGCATCGACCACCATCGACACAAGCTGGGCCCTGGTGCGGGTGG
* * * * * * *
3879 TTGCCTCGACCACCATCGAGACAAGATGGCCCCTAGTGTGGGCGG
1 TTGCATCGACCACCATCGACACAAGCTGGGCCCTGGTGCGGGTGG
* * * * * * *
3924 TTGCATCGAACAGCATCGACACATGCTAGGCCGTGGTACGGGTAG
1 TTGCATCGACCACCATCGACACAAGCTGGGCCCTGGTGCGGGTGG
*
3969 TTGCATCAACCACCAT
1 TTGCATCGACCACCAT
3985 TGCCACATGT
Statistics
Matches: 82, Mismatches: 24, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
45 82 1.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (45 bp):
TTGCATCGACCACCATCGACACAAGCTGGGCCCTGGTGCGGGTGG
Found at i:4622 original size:12 final size:12
Alignment explanation
Indices: 4598--4641 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
4588 CCTCCCTGCG
*
4598 TGCTACCGATCC
1 TGCTACCGGTCC
* *
4610 TACTACTGGTCC
1 TGCTACCGGTCC
4622 TGCTACCGGTCC
1 TGCTACCGGTCC
4634 TGCTACCG
1 TGCTACCG
4642 CAAACCTTGG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.14, C:0.39, G:0.20, T:0.27
Consensus pattern (12 bp):
TGCTACCGGTCC
Found at i:4699 original size:26 final size:26
Alignment explanation
Indices: 4670--4741 Score: 135
Period size: 26 Copynumber: 2.8 Consensus size: 26
4660 AATCTTACAT
*
4670 TGGGAATGAACTCCGTATGCTTAGAC
1 TGGGGATGAACTCCGTATGCTTAGAC
4696 TGGGGATGAACTCCGTATGCTTAGAC
1 TGGGGATGAACTCCGTATGCTTAGAC
4722 TGGGGATGAACTCCGTATGC
1 TGGGGATGAACTCCGTATGC
4742 CTAAGTTAAC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (26 bp):
TGGGGATGAACTCCGTATGCTTAGAC
Found at i:10664 original size:26 final size:26
Alignment explanation
Indices: 10628--10680 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10618 CCAGTCTGAT
10628 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10654 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10680 C
1 C
10681 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13249 original size:26 final size:26
Alignment explanation
Indices: 13213--13262 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
13203 CTTCGATCTT
*
13213 AGACTTGGAATGAAC-TCTGTATGCTA
1 AGACTAGGAATGAACTTC-GTATGCTA
13239 AGACTAGGAATGAACTTCGTATGC
1 AGACTAGGAATGAACTTCGTATGC
13263 CTATGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (26 bp):
AGACTAGGAATGAACTTCGTATGCTA
Found at i:13595 original size:26 final size:26
Alignment explanation
Indices: 13566--13615 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
13556 CCGATCTGAT
13566 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
13592 CTTAGATTGGGGATGAACTTCGTA
1 CTTAGACTGGGAATGAACTCCGTA
13616 CGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14502 original size:13 final size:13
Alignment explanation
Indices: 14484--14508 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14474 CAATGGCACA
14484 TGATGGCACATGG
1 TGATGGCACATGG
14497 TGATGGCACATG
1 TGATGGCACATG
14509 CATGGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:14600 original size:45 final size:44
Alignment explanation
Indices: 14551--14708 Score: 174
Period size: 45 Copynumber: 3.5 Consensus size: 44
14541 GTATGGGCAC
* * *
14551 TTGCCTCGACCGCCATCGGCACAAGCTGGGCCCTGGTGCAGGTGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGC-GGCGG
* *
14596 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGAACGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCG-GCGG
* * * * *
14641 TTGCATCGAACC-CCATCGGCACATGTTGGGCCGTGGTGCGGGGGG
1 TTGCCTCG-ACCACCATCGGCACAAGATGGGCCCTGGTGC-GGCGG
*
14686 TTGGCTCGACCACCATCGGCACA
1 TTGCCTCGACCACCATCGGCACA
14709 TGTCGAGCCT
Statistics
Matches: 95, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
44 4 0.04
45 87 0.92
46 4 0.04
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (44 bp):
TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGCGG
Found at i:15509 original size:26 final size:26
Alignment explanation
Indices: 15480--15532 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15470 CCGATTCGAT
*
15480 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15506 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15532 C
1 C
15533 CTCAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15676 original size:45 final size:45
Alignment explanation
Indices: 15604--15692 Score: 108
Period size: 45 Copynumber: 2.0 Consensus size: 45
15594 AGCCGGGGAT
* *
15604 CACCATCGACACATGCCGGATCTTGGTGCGGGCGGTTGCATCGAA
1 CACCATCGACACATGCCGGATCGTGGTGCAGGCGGTTGCATCGAA
* * * *
15649 CACCATCGGCACATGCTGGGA-CGTGGTGCAGGCTGTTGCCTCGA
1 CACCATCGACACATGC-CGGATCGTGGTGCAGGCGGTTGCATCGA
15693 CCATTATCGG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
45 34 0.92
46 3 0.08
ACGTcount: A:0.18, C:0.29, G:0.33, T:0.20
Consensus pattern (45 bp):
CACCATCGACACATGCCGGATCGTGGTGCAGGCGGTTGCATCGAA
Found at i:16186 original size:26 final size:26
Alignment explanation
Indices: 16149--16200 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16139 TCGGTCTGAT
*
16149 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCATATGC
* *
16175 TTAGACTGGGAATGACCTCCATATGC
1 TTAGACTAGGAATGAACTCCATATGC
16201 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGC
Found at i:16503 original size:26 final size:26
Alignment explanation
Indices: 16470--16548 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
16460 TCGATCCGAT
16470 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16496 CTTCGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
16522 CTTAGACTGGGAAT-AAGCTCCGTATG
1 CTTAGACTGGGAATGAA-CTCCGTATG
16548 C
1 C
16549 CTAAGCCAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 2 0.04
26 46 0.96
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17767 original size:26 final size:26
Alignment explanation
Indices: 17731--17781 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17721 CTGGTTGAAT
*
17731 CTTAGACTGGGAATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
17757 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATAAACTCCGTAT
17782 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:18674 original size:13 final size:13
Alignment explanation
Indices: 18656--18680 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18646 CAATGGTACA
18656 TGATGGCACATGG
1 TGATGGCACATGG
18669 TGATGGCACATG
1 TGATGGCACATG
18681 CATCGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:18810 original size:90 final size:89
Alignment explanation
Indices: 18679--18919 Score: 227
Period size: 90 Copynumber: 2.7 Consensus size: 89
18669 TGATGGCACA
* * * * * *
18679 TGCATCGACCATCATCGGCACAGGCT-GCCCTTTGGTATGGGCACTTGCCTCGACCACCATCAGC
1 TGCATCGAACACCATCGACACATGCTCGGCC-TTGGTGTGGGCA-TTGCCTCGACCACCATCAGC
* * *
18743 ACAAGCTG-TGCCTTAGTGTGGGCGGT
64 ACAAGATGAT-CCCTAGTGCGGGCGGT
* * * *
18769 TGCCTCGATCACCATCGACACATG-TCGGCTCTTGGTGTGGGCGATTGCCTTGACCACCATCGGC
1 TGCATCGAACACCATCGACACATGCTCGGC-CTTGGTGTGGGC-ATTGCCTCGACCACCATCAGC
*
18833 ACAAGATGATCCCTGGTGCGGGCGGT
64 ACAAGATGATCCCTAGTGCGGGCGGT
* * * * * *
18859 TGCATCGAACGCCATCGGCACATGCTGGGCCATGGTGCGGGCAGTTGCCTCAACCACCATC
1 TGCATCGAACACCATCGACACATGCTCGGCCTTGGTGTGGGCA-TTGCCTCGACCACCATC
18920 GACACATGCT
Statistics
Matches: 123, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
89 2 0.02
90 114 0.93
91 7 0.06
ACGTcount: A:0.18, C:0.32, G:0.29, T:0.22
Consensus pattern (89 bp):
TGCATCGAACACCATCGACACATGCTCGGCCTTGGTGTGGGCATTGCCTCGACCACCATCAGCAC
AAGATGATCCCTAGTGCGGGCGGT
Found at i:18850 original size:45 final size:43
Alignment explanation
Indices: 18683--18925 Score: 162
Period size: 45 Copynumber: 5.4 Consensus size: 43
18673 GGCACATGCA
* * * * **
18683 TCGACCATCATCGGCACAGGCTGCCCTTTGGTATGGGCACTTGCC
1 TCGACCACCATCGGCACAAG-TGTCC-TTGGTGTGGGCGGTTGCC
* *
18728 TCGACCACCATCAGCACAAGCTGTGCCTTAGTGTGGGCGGTTGCC
1 TCGACCACCATCGGCACAAG-TGT-CCTTGGTGTGGGCGGTTGCC
* * * * *
18773 TCGATCACCATCGACACATGTCGGCTCTTGGTGTGGGCGATTGCC
1 TCGACCACCATCGGCACAAGT-GTC-CTTGGTGTGGGCGGTTGCC
* * * *
18818 TTGACCACCATCGGCACAAGATGATCCCTGGTGCGGGCGGTTGCA
1 TCGACCACCATCGGCACAAG-TG-TCCTTGGTGTGGGCGGTTGCC
* * * * * * *
18863 TCGAACGCCATCGGCACATGCTGGGCCATGGTGCGGGCAGTTGCC
1 TCGACCACCATCGGCACAAG-T-GTCCTTGGTGTGGGCGGTTGCC
* *
18908 TCAACCACCATCGACACA
1 TCGACCACCATCGGCACA
18926 TGCTGAACCC
Statistics
Matches: 155, Mismatches: 37, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
44 2 0.01
45 148 0.95
46 5 0.03
ACGTcount: A:0.19, C:0.32, G:0.28, T:0.21
Consensus pattern (43 bp):
TCGACCACCATCGGCACAAGTGTCCTTGGTGTGGGCGGTTGCC
Found at i:18926 original size:45 final size:45
Alignment explanation
Indices: 18717--18930 Score: 173
Period size: 45 Copynumber: 4.8 Consensus size: 45
18707 CCTTTGGTAT
* * * * *
18717 GGGCACTTGCCTCGACCACCATC-AGCACAAGCTGTGCCTTAGTGT
1 GGGCAGTTGCCTCGACCACCATCGA-CACATGCTGGGCCTTGGTGC
* * * *
18762 GGGCGGTTGCCTCGATCACCATCGACACATG-TCGGCTCTTGGTGT
1 GGGCAGTTGCCTCGACCACCATCGACACATGCTGGGC-CTTGGTGC
* * * * ** *
18807 GGGC-GATTGCCTTGACCACCATCGGCACAAGATGATCCCTGGTGC
1 GGGCAG-TTGCCTCGACCACCATCGACACATGCTGGGCCTTGGTGC
* * * * * *
18852 GGGCGGTTGCATCGAACGCCATCGGCACATGCTGGGCCATGGTGC
1 GGGCAGTTGCCTCGACCACCATCGACACATGCTGGGCCTTGGTGC
*
18897 GGGCAGTTGCCTCAACCACCATCGACACATGCTG
1 GGGCAGTTGCCTCGACCACCATCGACACATGCTG
18931 AACCCCGATC
Statistics
Matches: 133, Mismatches: 31, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
44 4 0.03
45 125 0.94
46 4 0.03
ACGTcount: A:0.18, C:0.31, G:0.29, T:0.21
Consensus pattern (45 bp):
GGGCAGTTGCCTCGACCACCATCGACACATGCTGGGCCTTGGTGC
Found at i:19404 original size:26 final size:26
Alignment explanation
Indices: 19368--19420 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19358 CTAGCCCAAT
19368 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19394 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19420 C
1 C
19421 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20442 original size:45 final size:44
Alignment explanation
Indices: 20393--20561 Score: 149
Period size: 45 Copynumber: 3.8 Consensus size: 44
20383 TTGGGCCCTA
* * *
20393 GTGCGGGCGGTTGCCTCGATCACCATCAACACATGCCGGCCCTTG
1 GTGCGGGCGGTTGCCTCGACCACCATCAGCACATGCTGG-CCTTG
** * * * * * *
20438 GTGCGGGCAATTACCTCGACCACTATCGGCATAAGATGGCCTCTG
1 GTGCGGGCGGTTGCCTCGACCACCATCAGCACATGCTGGCCT-TG
* * * * *
20483 GTTCGGGCGGTTGCATCGAACACCATTAGCACATGCTGGGCCATG
1 GTGCGGGCGGTTGCCTCGACCACCATCAGCACATGCT-GGCCTTG
* *
20528 GTGTGGGCGGTTGCCTCGACCACCATCGGCACAT
1 GTGCGGGCGGTTGCCTCGACCACCATCAGCACAT
20562 TCTGAGCTTT
Statistics
Matches: 92, Mismatches: 30, Indels: 4
0.73 0.24 0.03
Matches are distributed among these distances:
44 3 0.03
45 85 0.92
46 4 0.04
ACGTcount: A:0.18, C:0.31, G:0.30, T:0.21
Consensus pattern (44 bp):
GTGCGGGCGGTTGCCTCGACCACCATCAGCACATGCTGGCCTTG
Found at i:21053 original size:26 final size:26
Alignment explanation
Indices: 21002--21054 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20992 TCGGTCTGAT
* *
21002 CTTAGACTGGGAATGAAGTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21028 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21054 C
1 C
21055 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27081 original size:333 final size:333
Alignment explanation
Indices: 26698--27324 Score: 851
Period size: 333 Copynumber: 1.9 Consensus size: 333
26688 ATCGGCTCAG
*
26698 TCCCCCTCTGCGTGCTACTGCCAATCTCGCTGCCGATCCGATCATAGACTGGGAATGAACTCCAT
1 TCCCCCTCTGCGTGCTACTGCCAATCCCGCTGCCGATCCGATCATAGACTGGGAATGAACTCCAT
* *
26763 ATGCTTAGATTGTGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTG
66 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTG
* * ** **
26828 AGCC-GACCGGAGAGGTATAACGCGCAAGCCGGGGATCAATCCGGTCCACCTCTATGTGCTGTCG
131 AGCCAG-CCGGAGAGGCATAACACGCAAGCCGAAGATCAATCCGGTCCACCTCTACATGCTGTCG
* * *
26892 GTCTCGCTGCCACAACCCTCGGTCCAGCTAGGGCTCAGACATGGAATCAACTCCGTATGCCTAAG
195 GTCCCGCTGCCACAACCCTCAGTCCAGCTAGGGCTCAGACATGGAATCAACTCCATATGCCTAAG
*
26957 CCAACCCACGAAATGAGTGTGCGGGCGCTCAGCCGATAGAAGAGGTAGAATGCGTAAGCCGGGGA
260 CCAACCCACGAAATGAGTGTACGGGCGCTCAGCCGATAGAAGAGGTAGAATGCGTAAGCCGGGGA
27022 TTGAACCGA
325 TTGAACCGA
* ** * * * * ***
27031 TCCCCTTCTGCGTGCTGTTGCCGATCCCGCTGTCGGTCCGATCTTAGACTGGGAATGAACTTTGT
1 TCCCCCTCTGCGTGCTACTGCCAATCCCGCTGCCGATCCGATCATAGACTGGGAATGAACTCCAT
* * * **
27096 ATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCTATGAAACGAGTGTACGGGCGTTG
66 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTG
* * * * * * *
27161 AGCCAGCCGGAGAGGCATAATACGTAAGTCGAAGATCGATCCGGTCCCCCTCTGCATGCTTTCGG
131 AGCCAGCCGGAGAGGCATAACACGCAAGCCGAAGATCAATCCGGTCCACCTCTACATGCTGTCGG
* * * * *
27226 TCCCGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTTCATATGCCTAAGC
196 TCCCGCTGCCACAACCCTCAGTCCAGCTAGGGCTCAGACATGGAATCAACTCCATATGCCTAAGC
* * *
27291 CAACCCATGAAATGAGTGTACGGGTGCTCGGCCG
261 CAACCCACGAAATGAGTGTACGGGCGCTCAGCCG
27325 GTCGGAGAGG
Statistics
Matches: 250, Mismatches: 43, Indels: 2
0.85 0.15 0.01
Matches are distributed among these distances:
333 249 1.00
334 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (333 bp):
TCCCCCTCTGCGTGCTACTGCCAATCCCGCTGCCGATCCGATCATAGACTGGGAATGAACTCCAT
ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTG
AGCCAGCCGGAGAGGCATAACACGCAAGCCGAAGATCAATCCGGTCCACCTCTACATGCTGTCGG
TCCCGCTGCCACAACCCTCAGTCCAGCTAGGGCTCAGACATGGAATCAACTCCATATGCCTAAGC
CAACCCACGAAATGAGTGTACGGGCGCTCAGCCGATAGAAGAGGTAGAATGCGTAAGCCGGGGAT
TGAACCGA
Found at i:27109 original size:26 final size:26
Alignment explanation
Indices: 27073--27125 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27063 TCGGTCCGAT
*
27073 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
27099 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
27125 C
1 C
27126 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:27393 original size:159 final size:159
Alignment explanation
Indices: 27098--27393 Score: 332
Period size: 159 Copynumber: 1.9 Consensus size: 159
27088 AACTTTGTAT
* * * *
27098 GCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCTATGAAACGAGTGTACGGGCGTTGAG
1 GCTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCCATGAAACGAGTGTACGGGCGTCGAG
* * * * * * *
27163 CCAGCCGGAGAGGCATAATACGTAAGTCGAAGATCGATCCGGTCCCCCTCTGCATGCTTTCGGTC
66 CCAGCCGGAGAGGCAAAATACGCAAGTCGAAGATCGACCCGATCCCCCTCTACATGCTGTCGATC
27228 CCGCTGCCACAACCCTCAGTCCGGCTGGG
131 CCGCTGCCACAACCCTCAGTCCGGCTGGG
* *
27257 GCTTAGACAT-GGAATGAACTTCATATGCCTAAGCCAACCCATGAAATGAGTGTACGGGTGCTCG
1 GCTTAGAC-TGGGAATGAACTTCATATGCCTAAGCCAACCCATGAAACGAGTGTACGGGCG-TCG
* * * ** *
27321 -GCCGGTCGGAGAGGCAAAATGCGCAAGTCGGGGATC-AGCCCGATCCCTTCC-C-ACGTGCTGT
64 AGCCAGCCGGAGAGGCAAAATACGCAAGTCGAAGATCGA-CCCGATCCC--CCTCTACATGCTGT
*
27382 CGATCCTGCTGC
126 CGATCCCGCTGC
27394 TGGTCCTGCT
Statistics
Matches: 112, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
158 1 0.01
159 105 0.94
160 4 0.04
161 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCCATGAAACGAGTGTACGGGCGTCGAG
CCAGCCGGAGAGGCAAAATACGCAAGTCGAAGATCGACCCGATCCCCCTCTACATGCTGTCGATC
CCGCTGCCACAACCCTCAGTCCGGCTGGG
Found at i:27458 original size:26 final size:26
Alignment explanation
Indices: 27429--27480 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27419 CTGGTCCGAT
27429 CTTAGACTAAGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
** *
27455 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
27481 GCTAACTAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCGTATG
Found at i:28374 original size:23 final size:23
Alignment explanation
Indices: 28344--28399 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
28334 TCGACCATCA
*
28344 ATGGCACATGATGGCACTTGGGG
1 ATGGCACATGAAGGCACTTGGGG
*
28367 ATGGCACATGAAGGCACTTGGTG
1 ATGGCACATGAAGGCACTTGGGG
28390 ATGGCACATG
1 ATGGCACATG
28400 CATCGACCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.25, C:0.18, G:0.36, T:0.21
Consensus pattern (23 bp):
ATGGCACATGAAGGCACTTGGGG
Found at i:29083 original size:26 final size:26
Alignment explanation
Indices: 29047--29099 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29037 CCGGTCCGAT
29047 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
29073 CTTAGCCTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
29099 C
1 C
29100 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:29182 original size:174 final size:173
Alignment explanation
Indices: 28898--29347 Score: 478
Period size: 174 Copynumber: 2.6 Consensus size: 173
28888 CTGGTTGGAG
* *
28898 GCTTAGA-TCGGGAATGAACTCTGTATGCCTAAGTCAACCCATC-AAACGAGCGTGTGGGCACTC
1 GCTTAGACT-GGGAATGAACTCTGTATGCCTAAGTCAACCCA-CGAAACGAGCGTGCGGGCGCTC
* * * * * * * * * *
28961 AACCGGCCGGGGAGGTAGGATATGC--AAGCCGAGGATCGACCCGGTCCCCCTCTGCGTATTACT
64 AGCCGGTC-GAGAGGCA--AAATGCGTAAGTCAAGAATCGAACCGGTCCCCCTCTGCGTACTACT
* * * * * *
29024 GTTGATCCCGCTACCGGTCCGATCTTAGACTGGGAATGAACTCTGTAT
126 GTCGATCCCGCTACCAGTCCAAACTTAGACTGGGAAAGAACTCCGTAT
*
29072 GCTTAGCCTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
29137 CCAGTCAGAGAGGCAAAATGCGTAAGTCAAGAAT-GAGATCGGTCCCCCTCTGTGTGCTACTGTC
66 CCGGTC-GAGAGGCAAAATGCGTAAGTCAAGAATCGA-ACCGGTCCCCCTCTGCGTACTACTGTC
*
29201 GATCCCGCTATCAGTCCAAACTTAGACTGGGAAAGAACTCCGTAT
129 GATCCCGCTACCAGTCCAAACTTAGACTGGGAAAGAACTCCGTAT
* * * * * * * *
29246 GCTTAGAGTGGGAATGAACTCTATATGCATAAGTTAACCCATGAAATGAGCGTGCGGGTGCTAAG
1 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
29311 CCGGTCGAAGAGGCATAATGCGTAAGTCGAGGATCGA
66 CCGGTCG-AGAGGCAAAATGCGTAAGTCAAGAATCGA
29348 CTCGATCCCA
Statistics
Matches: 231, Mismatches: 38, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
172 5 0.02
173 4 0.02
174 219 0.95
175 3 0.01
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (173 bp):
GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGAGAGGCAAAATGCGTAAGTCAAGAATCGAACCGGTCCCCCTCTGCGTACTACTGTCGA
TCCCGCTACCAGTCCAAACTTAGACTGGGAAAGAACTCCGTAT
Found at i:29272 original size:26 final size:26
Alignment explanation
Indices: 29221--29273 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29211 TCAGTCCAAA
*
29221 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
* * *
29247 CTTAGAGTGGGAATGAACTCTATATG
1 CTTAGACTGGGAAAGAACTCCATATG
29273 C
1 C
29274 ATAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:29615 original size:26 final size:26
Alignment explanation
Indices: 29576--29654 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
29566 CCGGCCTGAT
**
29576 CTTAGACTACGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
29602 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* * *
29628 CCTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
29654 C
1 C
29655 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:29655 original size:26 final size:26
Alignment explanation
Indices: 29586--29657 Score: 108
Period size: 26 Copynumber: 2.8 Consensus size: 26
29576 CTTAGACTAC
*
29586 GAATGAACTCTGTATGCTTAGACTGG
1 GAATGAACTCTGTATGCCTAGACTGG
*
29612 GAATGAACTTTGTATGCCTAGACTGG
1 GAATGAACTCTGTATGCCTAGACTGG
* *
29638 GGATGAACTCCGTATGCCTA
1 GAATGAACTCTGTATGCCTA
29658 AGTCAACCCA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (26 bp):
GAATGAACTCTGTATGCCTAGACTGG
Found at i:30217 original size:45 final size:45
Alignment explanation
Indices: 29974--30219 Score: 153
Period size: 45 Copynumber: 5.5 Consensus size: 45
29964 GGCACATGCA
* * ** *
29974 TCGACCATCATCAGCACAGGTT--GCCCTTTGGTATGGGCACTTGCC
1 TCGACCACCATCAGCACATGTTGGGCCC--TGGTGCGGGCAGTTGCC
** * * *
30019 TCGACTGCCATCGGCACAAGTTGGGCCCTGGTGCGGACAGTTGCC
1 TCGACCACCATCAGCACATGTTGGGCCCTGGTGCGGGCAGTTGCC
* *** *
30064 TCGATCACCATC-GACACAT-ACCGGCCCTTGGTACGGGC-GATTGCC
1 TCGACCACCATCAG-CACATGTTGGGCCC-TGGTGCGGGCAG-TTGCC
* * * * * *
30109 TCAACCACCATCAGTACAAT-ATAGGCCCTGGTGCGGGCAGTTACA
1 TCGACCACCATCAGCAC-ATGTTGGGCCCTGGTGCGGGCAGTTGCC
* * * * * *
30154 TCAAACACCAGCGGCACATGTTGGGCCATGGTGTGGGCAGTTGCC
1 TCGACCACCATCAGCACATGTTGGGCCCTGGTGCGGGCAGTTGCC
30199 TCGACCACCATCAGCACATGT
1 TCGACCACCATCAGCACATGT
30220 CGAGCCTCGA
Statistics
Matches: 152, Mismatches: 40, Indels: 18
0.72 0.19 0.09
Matches are distributed among these distances:
44 9 0.06
45 129 0.85
46 10 0.07
47 4 0.03
ACGTcount: A:0.21, C:0.31, G:0.26, T:0.21
Consensus pattern (45 bp):
TCGACCACCATCAGCACATGTTGGGCCCTGGTGCGGGCAGTTGCC
Found at i:30761 original size:159 final size:158
Alignment explanation
Indices: 30506--30810 Score: 420
Period size: 159 Copynumber: 1.9 Consensus size: 158
30496 CGCTACGGGT
* *
30506 CCCTCGGTCCGATTGGGGCTTAGACCAAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
1 CCCTCGGTCCGATTGGGGCTTAGACCAAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
* * * *
30571 AGCGTGCGGGTGCTCAATCGATCGAAAAGGCA-AGATGTGCAAGCCGGGGATCAACCC-AGTCCC
66 AGCGTGCGAGTGCTCAACCGACCGAAAAGGCAGA-ATGTGCAAGCCGAGGATCAACCCGA-TCCC
*
30634 CCTCTACGTGCTGTCAGTCTCGCTACCACAA
129 CCTCTACATGCTG-CAGTCTCGCTACCACAA
*
30665 CCCTCGGTCCTG-TTGGGGCTTAGA-CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
1 CCCTCGGTCC-GATTGGGGCTTAGACCA-AGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* * * *
30728 TGAGCGTGCGAGTGCTCAGCCGACCGGAGAGGCAGAATGTGCAAGCCGAGGATCAACCCGATCCC
64 CGAGCGTGCGAGTGCTCAACCGACCGAAAAGGCAGAATGTGCAAGCCGAGGATCAACCCGATCCC
*
30793 CCTCTGCATGCTGCAGTC
129 CCTCTACATGCTGCAGTC
30811 GATCCCACTG
Statistics
Matches: 129, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
158 7 0.05
159 119 0.92
160 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
CCCTCGGTCCGATTGGGGCTTAGACCAAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
AGCGTGCGAGTGCTCAACCGACCGAAAAGGCAGAATGTGCAAGCCGAGGATCAACCCGATCCCCC
TCTACATGCTGCAGTCTCGCTACCACAA
Found at i:32198 original size:45 final size:44
Alignment explanation
Indices: 32149--32273 Score: 106
Period size: 45 Copynumber: 2.8 Consensus size: 44
32139 CTACCCTTTG
* **
32149 GTGTGGGCACTTGCCTCGACCACCATCGGCACAAGCTGGGCCTTA
1 GTGTGGGC-CTTGCCTCGACCACCATCGGCACAAGCCGACCCTTA
* * * * * * *
32194 GTGTGGACGGTTGCCTTGATCACCATCGACACATGCCGACCCTTG
1 GTGTGGGC-CTTGCCTCGACCACCATCGGCACAAGCCGACCCTTA
* * *
32239 GTGCGAGCCATTGCCTCGACTACCATCGGCACAAG
1 GTGTGGGCC-TTGCCTCGACCACCATCGGCACAAG
32274 ATGGCCACTG
Statistics
Matches: 59, Mismatches: 20, Indels: 2
0.73 0.25 0.02
Matches are distributed among these distances:
45 59 1.00
ACGTcount: A:0.19, C:0.33, G:0.27, T:0.21
Consensus pattern (44 bp):
GTGTGGGCCTTGCCTCGACCACCATCGGCACAAGCCGACCCTTA
Found at i:32840 original size:26 final size:26
Alignment explanation
Indices: 32804--32856 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32794 TCAGTCCGAT
32804 CTTAGACTGGGAATGAACTTCGCATG
1 CTTAGACTGGGAATGAACTTCGCATG
*
32830 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGCATG
32856 C
1 C
32857 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGCATG
Found at i:33193 original size:26 final size:26
Alignment explanation
Indices: 33157--33209 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33147 CTGGTCTGAT
33157 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
33183 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
33209 C
1 C
33210 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33379 original size:196 final size:194
Alignment explanation
Indices: 32988--33364 Score: 436
Period size: 194 Copynumber: 1.9 Consensus size: 194
32978 TCCGGTTGGA
* **
32988 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCATGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCATACGGGCACTCAG
* * * * * * * *
33053 CTGGTCGGAGAGGCAGAATGCGTAAGCCAAGGATCGGCCTGATCCCCTGCGTGCTACCGATCCTA
66 CCGGCCAGAGAGGCAGAATGCGCAAGCCAAGGATCGCCCAGATCCCCTACGTGCTACCGATCCCA
* * * * *
33118 CTGCTGGTCTTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATAT
131 CTACAGGTCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTACATAT
* * *
33182 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCAC-AAAACGAGCGTACGGGCACTC
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAA-GAGCATACGGGCACTC
* * * * **
33245 AGCCGGCCAGAGAGGTAGGATGCGCAAGCCAGGGATTGACCCAG-TCCCCTCTACGTGCTGTCGA
64 AGCCGGCCAGAGAGGCAGAATGCGCAAGCCAAGGATCG-CCCAGAT-CCC-CTACGTGCTACCGA
* * *
33309 TCCCGCTACAGGTCCTGCTACCGTAACCCTTGGTCTGGTCCGATCTTAGACTGGGA
126 TCCCACTACAGGTCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGA
33365 GCACACTACA
Statistics
Matches: 151, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
193 5 0.03
194 81 0.54
195 6 0.04
196 59 0.39
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (194 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCATACGGGCACTCAG
CCGGCCAGAGAGGCAGAATGCGCAAGCCAAGGATCGCCCAGATCCCCTACGTGCTACCGATCCCA
CTACAGGTCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTACATAT
Found at i:33485 original size:26 final size:26
Alignment explanation
Indices: 33456--33508 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33446 TTGGTCCGAT
33456 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
33482 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
33508 C
1 C
33509 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:33843 original size:26 final size:26
Alignment explanation
Indices: 33814--33866 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33804 CCGATCTGAT
* *
33814 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
**
33840 CTTAGAATGGGGTTGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
33866 C
1 C
33867 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:34150 original size:45 final size:44
Alignment explanation
Indices: 34015--34138 Score: 131
Period size: 45 Copynumber: 2.8 Consensus size: 44
34005 ATCAGCATAA
* * * *
34015 GCTGGGCCCTGGTGCAGGCGGTTACCTCAACCACCATCGGTACAA
1 GCTGGG-CTTGGTGCAGGCGGTTGCCTCGACCACCATCGGTACAT
* * * * * *
34060 GATGGCCCTTGGTGCGGGTGGTTGCATCGAACACCATCGGTACAT
1 GCTGG-GCTTGGTGCAGGCGGTTGCCTCGACCACCATCGGTACAT
34105 GCTGGGCTGTGGTGCAGGCGGTTGCCTCGACCAC
1 GCTGGGCT-TGGTGCAGGCGGTTGCCTCGACCAC
34139 TATTGGCACA
Statistics
Matches: 61, Mismatches: 16, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
44 2 0.03
45 59 0.97
ACGTcount: A:0.16, C:0.29, G:0.34, T:0.21
Consensus pattern (44 bp):
GCTGGGCTTGGTGCAGGCGGTTGCCTCGACCACCATCGGTACAT
Found at i:34667 original size:26 final size:26
Alignment explanation
Indices: 34628--34681 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
34618 GGTCCAATCT
*
34628 TAGACTGGGAATGAACTTCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
34654 TAGACTAGGG-ATGAACTCCGTATGCC
1 TAGACT-GGGAATGAACTCCGTATGCC
34680 TA
1 TA
34682 ATTCAACCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:35768 original size:45 final size:45
Alignment explanation
Indices: 35611--35765 Score: 184
Period size: 45 Copynumber: 3.4 Consensus size: 45
35601 GGGGTACCTA
* *
35611 CCTCAACCGCCATCGGCACAAGCTGGGCCCTGGTGTGGGCAGTTG
1 CCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGTGGGCAGTTG
* * * * **
35656 CCTCGACCACCATCTGTACAAGATGGCCCCTGGTGTGGGTGGTTG
1 CCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGTGGGCAGTTG
* * * * * *
35701 CATCGAACACCATTGGCACATGCTGGGCCATGGTATGGGCAGTTG
1 CCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGTGGGCAGTTG
35746 CCTCGACCACCATCGGCACA
1 CCTCGACCACCATCGGCACA
35766 TGCCAAGCCC
Statistics
Matches: 87, Mismatches: 23, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
45 87 1.00
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.20
Consensus pattern (45 bp):
CCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGTGGGCAGTTG
Found at i:36256 original size:26 final size:26
Alignment explanation
Indices: 36205--36257 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36195 CCGGTCTGAT
* *
36205 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
36231 CTTAGACTGGGAATGAGCTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
36257 C
1 C
36258 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:36576 original size:26 final size:26
Alignment explanation
Indices: 36526--36578 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36516 CCGGTCCGAT
**
36526 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36552 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36578 C
1 C
36579 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36599 original size:162 final size:160
Alignment explanation
Indices: 36068--36604 Score: 461
Period size: 162 Copynumber: 3.3 Consensus size: 160
36058 AGTCTGGGGG
* * * *
36068 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTACAGGCGCTAAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTAA-
* * * * * * *
36133 TCGATCGGAGAGGCAGGATGCGTAAGTC-GAGGATCGGCCTGATTCCCCTTTGTGTGCTGCTTCC
65 CCGATCGGAGAGGCAGGATGCGCAAGTCAG-GGATCGACC-CAGTCCCCTTTGCGTGCTGCTACC
* *
36197 GGTCTGATCTTAGACTGGGAATGAACTTCGTAT
128 GGTCCGATCTTAGACTGGGAATGAACTTTGTAT
* * * * *
36230 GCTTAGACTGGGAATGAGCTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCT-AA
* ** ** * *
36295 CC-AGCGGGAGAGGCATAATATGCAAGTCGGGGATCGACCC-GATCCCCTTTTGCATGCTGTCGA
65 CCGATC-GGAGAGGCAGGATGCGCAAGTCAGGGATCGACCCAG-TCCCC-TTTGCGTGCTG-C--
* * * ** * * * **
36358 TCCCGTTGCC-A-C-AACCCT-CG-AT--CCGGTTG-GG
124 TACCGGT-CCGATCTTAGACTGGGAATGAAC-TTTGTAT
* * * *
36389 GCTTAGA-TCGGGAATGAACTCTGTATGCCGAAGTCAACCCATGAAATGAGCATGCGGGTGCTCA
1 GCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCT-A
* *
36453 ACCGATCGAAGAGGCAGGATGCGCAA-TCTAGGGATCGACCCAGTCCCCTTCTACGTGCTGCTAC
64 ACCGATCGGAGAGGCAGGATGCGCAAGTC-AGGGATCGACCCAGTCCCCTT-TGCGTGCTGCTAC
36517 CGGTCCGATCTTAGACTGGGAATGAACTTTGTAT
127 CGGTCCGATCTTAGACTGGGAATGAACTTTGTAT
*
36551 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACGCACGAAATGAGCGTG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTG
36605 TGGGCGTTGA
Statistics
Matches: 284, Mismatches: 67, Indels: 48
0.71 0.17 0.12
Matches are distributed among these distances:
155 2 0.01
156 6 0.02
157 1 0.00
158 9 0.03
159 94 0.33
160 7 0.02
161 12 0.04
162 138 0.49
163 7 0.02
164 1 0.00
165 6 0.02
166 1 0.00
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (160 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTAAC
CGATCGGAGAGGCAGGATGCGCAAGTCAGGGATCGACCCAGTCCCCTTTGCGTGCTGCTACCGGT
CCGATCTTAGACTGGGAATGAACTTTGTAT
Found at i:36651 original size:321 final size:321
Alignment explanation
Indices: 36065--36755 Score: 820
Period size: 321 Copynumber: 2.2 Consensus size: 321
36055 CTCAGTCTGG
* * *
36065 GGGGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTACAGGCGCT
1 GGGGCTTAGACAGGGAATGAACTCTGTATGCCGAAGTCAACCCACGAAATGAGCATACAGGCGCT
* * * * * * ** *
36130 AAGTCGATCGGAGAGGCAGGATGCGTAAGTCGAGGATCGGCCTGATTCCCCTTTGTGTGCTGCTT
66 AAGCCGATCGAAGAGGCAGGATGCGCAAGTCGAGGATCGACCTCAGTCCCCTTTACGTGCTGCTA
* *
36195 CCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAGCTCCATATGCCT
131 CCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCATATGCCT
* * * * * *
36260 AAGTCAACCCACAAAACGAGCGTGCGGGTGCTGAGCCAGCGGGAGAGGCATAATATGCAAGTCGG
196 AAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGCCAGCCGAAGAGGCATAATACGCAAATCAG
* ** * * **
36325 GGATCGACCCGATCC-CCT-TTTGCATGCTGTCGATCCCGTTGCCACAACCCTCGATCCGGTT
261 GGATCGACCCGATCCTCCTCTGTG--TGCTACCGATACCGCTGCCACAACCCTCGATCCGACT
* * * *
36386 GGGGCTTAGATC-GGGAATGAACTCTGTATGCCGAAGTCAACCCATGAAATGAGCATGCGGGTGC
1 GGGGCTTAGA-CAGGGAATGAACTCTGTATGCCGAAGTCAACCCACGAAATGAGCATACAGGCGC
*
36450 TCAA-CCGATCGAAGAGGCAGGATGCGCAA-TCTAGGGATCGACC-CAGTCCCCTTCTACGTGCT
65 T-AAGCCGATCGAAGAGGCAGGATGCGCAAGTCGA-GGATCGACCTCAGTCCCCTT-TACGTGCT
* *
36512 GCTACCGGTCCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTAT
127 GCTACCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCATAT
* * * * * * *
36577 GCCTAAGTCAACGCACGAAATGAGCGTGTGGGCGTTGAG-CAGGCCGAAGAGGCATAATGCGTAA
192 GCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGCCA-GCCGAAGAGGCATAATACGCAA
* * *
36641 ATTAGGGATCGGCCCGATCCTCCTCTGTGTGCTACCGATACCGCTGCCACAACCCTCGGTCCGAC
256 ATCAGGGATCGACCCGATCCTCCTCTGTGTGCTACCGATACCGCTGCCACAACCCTCGATCCGAC
36706 T
321 T
* * * * * *
36707 GAGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAA
1 GGGGCTTAGACAGGGAATGAACTCTGTATGCCGAAGTCAACCCACGAAA
36756 CGAGTGTGTG
Statistics
Matches: 312, Mismatches: 50, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
320 14 0.04
321 289 0.93
322 6 0.02
323 3 0.01
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (321 bp):
GGGGCTTAGACAGGGAATGAACTCTGTATGCCGAAGTCAACCCACGAAATGAGCATACAGGCGCT
AAGCCGATCGAAGAGGCAGGATGCGCAAGTCGAGGATCGACCTCAGTCCCCTTTACGTGCTGCTA
CCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCATATGCCT
AAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGCCAGCCGAAGAGGCATAATACGCAAATCAG
GGATCGACCCGATCCTCCTCTGTGTGCTACCGATACCGCTGCCACAACCCTCGATCCGACT
Found at i:36918 original size:26 final size:26
Alignment explanation
Indices: 36882--36934 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36872 TTGACCCGAT
*
36882 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
36908 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
36934 C
1 C
36935 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:38512 original size:26 final size:26
Alignment explanation
Indices: 38476--38528 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
38466 TCGGTCCAAT
*
38476 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
38502 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
38528 C
1 C
38529 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:38823 original size:26 final size:26
Alignment explanation
Indices: 38794--38847 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
38784 CCGGTCTGAT
*
38794 CTTAGACTGAGAATGAGCTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
38820 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
38846 CT
1 CT
38848 CAGCCAACCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:39008 original size:26 final size:26
Alignment explanation
Indices: 38957--39009 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
38947 CCAGTTCGAT
*
38957 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
38983 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
39009 C
1 C
39010 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:40108 original size:45 final size:45
Alignment explanation
Indices: 39960--40105 Score: 193
Period size: 45 Copynumber: 3.2 Consensus size: 45
39950 GCCTCGACTG
* *
39960 CCATCGGCACAAGCTGGGCCCTAGTGCGAGCGGTTGCATCGACCA
1 CCATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTGCATCGACCA
* * * * *
40005 CCATTGGCACAAGATGGCCCCTGGTGTGGGCGGTTGCATCGAACA
1 CCATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTGCATCGACCA
* * * *
40050 CCATTGGCACATGCTGGGCCATGGTGCGGGCGGTTGCCTCGACCA
1 CCATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTGCATCGACCA
40095 CCATCGGCACA
1 CCATCGGCACA
40106 TGCCGAGCCT
Statistics
Matches: 86, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 86 1.00
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.18
Consensus pattern (45 bp):
CCATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTGCATCGACCA
Found at i:41951 original size:45 final size:45
Alignment explanation
Indices: 41902--42072 Score: 157
Period size: 45 Copynumber: 3.8 Consensus size: 45
41892 GGCTGGGGCC
* * * *
41902 TGGTGCGGGTGATTGTCTTGATCACCATCGGCACATACCGACCCA
1 TGGTGCGGGCGATTGCCTCGACCACCATCGGCACATACCGACCCA
* * * *
41947 TGGTGCAGGTGATTGCCTCGACCACCATC-GCAACA-AGACGACCCT
1 TGGTGCGGGCGATTGCCTCGACCACCATCGGC-ACATA-CCGACCCA
* * * * * ** *
41992 TGGTGCGGGCGGTTGCATCGAACACCATCGGCACATGCTGGGCTA
1 TGGTGCGGGCGATTGCCTCGACCACCATCGGCACATACCGACCCA
*
42037 TGGTGCGGGCGGTTGCCTCGACCACCATCGGCACAT
1 TGGTGCGGGCGATTGCCTCGACCACCATCGGCACAT
42073 TCTGAGCCTC
Statistics
Matches: 102, Mismatches: 20, Indels: 8
0.78 0.15 0.06
Matches are distributed among these distances:
44 3 0.03
45 97 0.95
46 2 0.02
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.20
Consensus pattern (45 bp):
TGGTGCGGGCGATTGCCTCGACCACCATCGGCACATACCGACCCA
Found at i:41996 original size:90 final size:90
Alignment explanation
Indices: 41902--42066 Score: 206
Period size: 90 Copynumber: 1.8 Consensus size: 90
41892 GGCTGGGGCC
* * * *
41902 TGGTGCGGGTGATTGTC-TTGATCACCATCGGCACATACCGACCCATGGTGCAGGTGATTGCCTC
1 TGGTGCGGGCGATTG-CATCGAACACCATCGGCACATACCGACCCATGGTGCAGGCGATTGCCTC
41966 GACCACCATCGCAACAAGACGACCCT
65 GACCACCATCGCAACAAGACGACCCT
* * * ** * * *
41992 TGGTGCGGGCGGTTGCATCGAACACCATCGGCACATGCTGGGCTATGGTGCGGGCGGTTGCCTCG
1 TGGTGCGGGCGATTGCATCGAACACCATCGGCACATACCGACCCATGGTGCAGGCGATTGCCTCG
42057 ACCACCATCG
66 ACCACCATCG
42067 GCACATTCTG
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
89 1 0.02
90 61 0.98
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (90 bp):
TGGTGCGGGCGATTGCATCGAACACCATCGGCACATACCGACCCATGGTGCAGGCGATTGCCTCG
ACCACCATCGCAACAAGACGACCCT
Found at i:42550 original size:26 final size:26
Alignment explanation
Indices: 42512--42564 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
42502 CCGGTCCAAT
*
42512 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
42538 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
42564 C
1 C
42565 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:42832 original size:159 final size:159
Alignment explanation
Indices: 42537--42825 Score: 364
Period size: 159 Copynumber: 1.8 Consensus size: 159
42527 AACTCTGTAT
*
42537 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCACTCAG
** * * * * **
42602 TTACCTTGAGAGGCATAATGCACAAGCCAGGGATTGGCCCGGTCCCCCTTTACGTGCTACCGATC
66 CGACCTGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCTTTACGTGCTACAAATC
42667 CCGCTGCCACAACCCTCGGTCCGGCTGGG
131 CCGCTGCCACAACCCTCGGTCCGGCTGGG
* * ** *
42696 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCACTCAG
* ** * * * * *
42761 CCGGCC-GGAGAGGCAGAATGTGCAAGTCGGGGATCGACTCGGTCCCCTTTTATGTGCTACAAAT
66 -CGACCTGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCTTTACGTGCTACAAAT
42825 C
130 C
42826 TTGCTGCTGG
Statistics
Matches: 107, Mismatches: 22, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
159 105 0.98
160 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCACTCAG
CGACCTGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCTTTACGTGCTACAAATC
CCGCTGCCACAACCCTCGGTCCGGCTGGG
Found at i:42904 original size:26 final size:26
Alignment explanation
Indices: 42868--42920 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
42858 CCGGGCTGAT
* *
42868 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
42894 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
42920 C
1 C
42921 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:43993 original size:44 final size:44
Alignment explanation
Indices: 43833--44014 Score: 150
Period size: 45 Copynumber: 4.1 Consensus size: 44
43823 CATCAACCAT
* * * ** *
43833 CATCGGCACACGCT-GCCCTTTGGTACGGGCACTTGCCTCGACTGC
1 CATCGGCACAAGCTGGCCC-CTGGTGCGGGCGGTTGCCTCGAC-AC
* * * *
43878 CATTGGCACAAGCTGGGCCCTGGTGCAGGCGGTTCCCTCGATCAC
1 CATCGGCACAAGCTGGCCCCTGGTGCGGGCGGTTGCCTCGA-CAC
* * ** * *
43923 CATCAGCACATGCCAGCCCTTGGTGCGGGCGATTGCCTCGACAC
1 CATCGGCACAAGCTGGCCCCTGGTGCGGGCGGTTGCCTCGACAC
* * *
43967 CATCGGCACAAGATGGCCCCTAGTGCGGGCGGTTGCATCGAACAC
1 CATCGGCACAAGCTGGCCCCTGGTGCGGGCGGTTGCCTCG-ACAC
44012 CAT
1 CAT
44015 TGGCCCATGT
Statistics
Matches: 105, Mismatches: 29, Indels: 6
0.75 0.21 0.04
Matches are distributed among these distances:
44 34 0.32
45 67 0.64
46 4 0.04
ACGTcount: A:0.18, C:0.35, G:0.29, T:0.19
Consensus pattern (44 bp):
CATCGGCACAAGCTGGCCCCTGGTGCGGGCGGTTGCCTCGACAC
Found at i:50725 original size:26 final size:26
Alignment explanation
Indices: 50685--50736 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
50675 CAGTCCAATT
* *
50685 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACCCCATATGC
* *
50711 TTAGACTGGGGATGAACCCCATATGC
1 TTAGACTAGGAATGAACCCCATATGC
50737 CTAAGACAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
TTAGACTAGGAATGAACCCCATATGC
Found at i:51000 original size:90 final size:90
Alignment explanation
Indices: 50906--51108 Score: 239
Period size: 90 Copynumber: 2.3 Consensus size: 90
50896 GTATGGGCAC
* * * * * * *
50906 TTACCTTGACCACCATTAGCACAAGCTGGGC-CTGGGTGCAGGTGGTTGCCTCGATCACTATCGG
1 TTACCTCGACCACCATCAGCACAAGATGGCCACT-GGTGCAGGTGGTTGCATCGAACACCATCGG
* *
50970 CACATG-TCGGCCCTTGGTGCGGGCGA
65 CACATGCT-GGCCCGTGGTGAGGGCGA
* *
50996 TTACCTCGACCACCATCGGCACAAGATGGCCACTGGTGCGGGTGGTTGCATCGAACACCATCGGC
1 TTACCTCGACCACCATCAGCACAAGATGGCCACTGGTGCAGGTGGTTGCATCGAACACCATCGGC
* *
51061 ACATGCTGGGCCGTGGTGAGGGCGG
66 ACATGCTGGCCCGTGGTGAGGGCGA
* *
51086 TTGCCTCGACCACCATCGGCACA
1 TTACCTCGACCACCATCAGCACA
51109 TGTCGAGCCC
Statistics
Matches: 97, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
90 94 0.97
91 3 0.03
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (90 bp):
TTACCTCGACCACCATCAGCACAAGATGGCCACTGGTGCAGGTGGTTGCATCGAACACCATCGGC
ACATGCTGGCCCGTGGTGAGGGCGA
Found at i:51003 original size:45 final size:44
Alignment explanation
Indices: 50940--51118 Score: 189
Period size: 45 Copynumber: 4.0 Consensus size: 44
50930 GCTGGGCCTG
* * * *
50940 GGTGCAGGTGGTTGCCTCGATCACTATCGGCACATGTCGGCCCTT
1 GGTGCGGGCGGTTGCCTCGACCACCATCGGCACATGTCGGCCC-T
* * *
50985 GGTGCGGGCGATTACCTCGACCACCATCGGCACAAGAT-GGCCACT
1 GGTGCGGGCGGTTGCCTCGACCACCATCGGCACATG-TCGGCC-CT
* * * * *
51030 GGTGCGGGTGGTTGCATCGAACACCATCGGCACATGCTGGGCCGT
1 GGTGCGGGCGGTTGCCTCGACCACCATCGGCACATG-TCGGCCCT
*
51075 GGTGAGGGCGGTTGCCTCGACCACCATCGGCACATGTCGAGCCC
1 GGTGCGGGCGGTTGCCTCGACCACCATCGGCACATGTCG-GCCC
51119 CAGTTGGCCC
Statistics
Matches: 109, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
44 2 0.02
45 101 0.93
46 6 0.06
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.20
Consensus pattern (44 bp):
GGTGCGGGCGGTTGCCTCGACCACCATCGGCACATGTCGGCCCT
Found at i:51599 original size:26 final size:26
Alignment explanation
Indices: 51563--51640 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
51553 CCAGTTCGAT
*
51563 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
51589 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
51615 CTTAGACT-AGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
51640 C
1 C
51641 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
25 16 0.33
26 33 0.67
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:53073 original size:90 final size:90
Alignment explanation
Indices: 52970--53137 Score: 210
Period size: 90 Copynumber: 1.9 Consensus size: 90
52960 ACAAGCTGGG
* * * * * * *
52970 CCCTAGTGTGGGCGGTTGCCTAGATCACCATCAGCACATGCCGGCCCTTGGTGCGGGTGATTGCC
1 CCCTAGTGCGGGCGGTTGCATAGAACACCATCAGCACATGCCGGCCCGTGGTACGGGCGATCGCC
53035 TCGACCACCATCGATATAAGATGGC
66 TCGACCACCATCGATATAAGATGGC
* * * ** **
53060 CCCTGGTGCGGGCGGTTGCATCGAACACCATCGGCACATGTTGGGTCGTGGTACGGGCGATCGCC
1 CCCTAGTGCGGGCGGTTGCATAGAACACCATCAGCACATGCCGGCCCGTGGTACGGGCGATCGCC
53125 TCGACCACCATCG
66 TCGACCACCATCG
53138 GCACATGCCG
Statistics
Matches: 64, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
90 64 1.00
ACGTcount: A:0.17, C:0.31, G:0.31, T:0.21
Consensus pattern (90 bp):
CCCTAGTGCGGGCGGTTGCATAGAACACCATCAGCACATGCCGGCCCGTGGTACGGGCGATCGCC
TCGACCACCATCGATATAAGATGGC
Found at i:53621 original size:26 final size:26
Alignment explanation
Indices: 53585--53637 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
53575 TCGATCCAAT
*
53585 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
53611 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
53637 C
1 C
53638 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:54107 original size:12 final size:12
Alignment explanation
Indices: 54092--54122 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
54082 GTGCTGCCAA
54092 TCTTGCTGCGGG
1 TCTTGCTGCGGG
*
54104 TCTTGCTGTGGG
1 TCTTGCTGCGGG
54116 TCTTGCT
1 TCTTGCT
54123 ATCGTAACAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.23, G:0.35, T:0.42
Consensus pattern (12 bp):
TCTTGCTGCGGG
Found at i:60855 original size:45 final size:44
Alignment explanation
Indices: 60791--61009 Score: 206
Period size: 45 Copynumber: 4.9 Consensus size: 44
60781 GTATGGGCAC
** * * *
60791 TTGCCTCGACTGCCATCGGCACAAGCTGGGCCCTGGTCTGGGTGG
1 TTGCCTCGACCACCATCGGCACATGCTGGGCCCTGGTC-GGGCGA
* * *
60836 TTGCCTCGATCACCATCGGCACATGC-CGGCCCTTGGTACGGGTGA
1 TTGCCTCGACCACCATCGGCACATGCTGGGCCC-TGGT-CGGGCGA
* * * * *
60881 TTGCCTCGACCACCATTGACACAAGATGGCCCCTGGTACGGGCGA
1 TTGCCTCGACCACCATCGGCACATGCTGGGCCCTGGT-CGGGCGA
* * * * *
60926 TTGCATCGAACACCATCGGCACATGCTGGGCCGTGGTGGGAGCGG
1 TTGCCTCGACCACCATCGGCACATGCTGGGCCCTGGTCGG-GCGA
* *
60971 TTGCCTCGACCACCATCGGCACATGCTGAGCCCCGGTCG
1 TTGCCTCGACCACCATCGGCACATGCTGGGCCCTGGTCG
61010 ACCCTCAAAA
Statistics
Matches: 140, Mismatches: 30, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
44 7 0.05
45 128 0.91
46 5 0.04
ACGTcount: A:0.16, C:0.33, G:0.31, T:0.20
Consensus pattern (44 bp):
TTGCCTCGACCACCATCGGCACATGCTGGGCCCTGGTCGGGCGA
Found at i:61613 original size:26 final size:26
Alignment explanation
Indices: 61584--61636 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
61574 CCGATCTGAT
* *
61584 CTTAGACT-GGGAGTGAACTCCGTATG
1 CTTAAACTGGGGA-TGAACTCCATATG
61610 CTTAAACTGGGGATGAACTCCATATG
1 CTTAAACTGGGGATGAACTCCATATG
61636 C
1 C
61637 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGGATGAACTCCATATG
Found at i:62920 original size:26 final size:26
Alignment explanation
Indices: 62891--62943 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
62881 CCTATCCGAT
*
62891 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
62917 CTTAGAATGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
62943 C
1 C
62944 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:63118 original size:26 final size:26
Alignment explanation
Indices: 63089--63138 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
63079 GGTCTGATCA
*
63089 TAGACTAGGAATGAACTCTGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCT
*
63115 TAGACTAGGGATGAACTCCGTATG
1 TAGACTAGGAATGAACTCCGTATG
63139 GCTAAGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCT
Found at i:65108 original size:45 final size:45
Alignment explanation
Indices: 65008--65109 Score: 116
Period size: 45 Copynumber: 2.3 Consensus size: 45
64998 CGCGAGCCGT
* * *
65008 CATCGGCACAAGCTGGGCCCTGGTGTGGGCGGTTGCATTGAACAC
1 CATCGGCACATGCTGGGCCATGGTGTGGGCGGTTGCATCGAACAC
** * **
65053 CATCAACACATGCTGGGCCATGGTGCT-GGCGGTTGCCTCGGCCAC
1 CATCGGCACATGCTGGGCCATGGTG-TGGGCGGTTGCATCGAACAC
65098 CATCGGCACATG
1 CATCGGCACATG
65110 TCGAGCCTTG
Statistics
Matches: 46, Mismatches: 10, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
45 45 0.98
46 1 0.02
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (45 bp):
CATCGGCACATGCTGGGCCATGGTGTGGGCGGTTGCATCGAACAC
Found at i:65576 original size:26 final size:26
Alignment explanation
Indices: 65540--65589 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
65530 CGATCTGATT
*
65540 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATAAACTCCGTATGC
65566 TTAGACTGGGAATAAACTCCGTAT
1 TTAGACTGGGAATAAACTCCGTAT
65590 CCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCGTATGC
Found at i:65913 original size:26 final size:26
Alignment explanation
Indices: 65883--65935 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
65873 CCGATCCGAT
*
65883 CTTAGACTGGGAATGAACTCCGAATG
1 CTTAGACCGGGAATGAACTCCGAATG
* *
65909 CTTAGACCGGGGATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGAATG
65935 C
1 C
65936 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGAATG
Found at i:66688 original size:90 final size:90
Alignment explanation
Indices: 66593--66766 Score: 228
Period size: 90 Copynumber: 1.9 Consensus size: 90
66583 AGGCTGGCCT
* * * *
66593 TTGGTACGGGC-ACTTACCTC-GACCACCATTGGCACAAGC-TGGGCCCTGGTGTGGACGGTTGC
1 TTGGTACGGGCGA-TTACCTCAG-CCACCATCGACACAA-CATGGCCCCTGGTGCGGACGGTTGC
* *
66655 CTCGATCACCATCGACACATGCCAGCCC
63 ATCGAACACCATCGACACATGCCAGCCC
* *
66683 TTGGTACGGGCGATTGCCTCAGCCACCATCGACACAACATGGCCCCTGGTGCGGGCGGTTGCATC
1 TTGGTACGGGCGATTACCTCAGCCACCATCGACACAACATGGCCCCTGGTGCGGACGGTTGCATC
66748 GAACACCATCGACACATGC
66 GAACACCATCGACACATGC
66767 TGGTGTCATG
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
89 1 0.01
90 70 0.96
91 2 0.03
ACGTcount: A:0.20, C:0.34, G:0.27, T:0.19
Consensus pattern (90 bp):
TTGGTACGGGCGATTACCTCAGCCACCATCGACACAACATGGCCCCTGGTGCGGACGGTTGCATC
GAACACCATCGACACATGCCAGCCC
Found at i:66700 original size:45 final size:46
Alignment explanation
Indices: 66651--66766 Score: 123
Period size: 45 Copynumber: 2.6 Consensus size: 46
66641 GTGTGGACGG
* *
66651 TTGCCTCGATCACCATCGACACATGCCA-GCCCTTGGTACGGGCGA
1 TTGCCTCGAACACCATCGACACATGCCAGGCCCCTGGTACGGGCGA
* * * *
66696 TTGCCTC-AGCCACCATCGACACA--ACATGGCCCCTGGTGCGGGCGG
1 TTGCCTCGA-ACACCATCGACACATGCCA-GGCCCCTGGTACGGGCGA
*
66741 TTGCATCGAACACCATCGACACATGC
1 TTGCCTCGAACACCATCGACACATGC
66767 TGGTGTCATG
Statistics
Matches: 57, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
43 2 0.04
44 1 0.02
45 53 0.93
46 1 0.02
ACGTcount: A:0.22, C:0.36, G:0.24, T:0.18
Consensus pattern (46 bp):
TTGCCTCGAACACCATCGACACATGCCAGGCCCCTGGTACGGGCGA
Found at i:71692 original size:90 final size:90
Alignment explanation
Indices: 71598--71762 Score: 215
Period size: 90 Copynumber: 1.8 Consensus size: 90
71588 GGCCTTGGTA
* * * * *
71598 CGGGCAGTTGCCTCGATCACCATCGATACATGCTGGCCCTTGGTGCGGGCGA-TTGCCTCAACCA
1 CGGGCAGTTGCATCCAACACCATCGACACATGCTGGCCCGTGGTGCGGG-GAGTTGCCTCAACCA
71662 CCATCGACACAAGATGGACCCTAGTG
65 CCATCGACACAAGATGGACCCTAGTG
* * * * * *
71688 CGGGCGGTTGCATCCAACACCATCGGCACATGCTGGGCCGTGGTGTGGGTAGTTGCCTCGACCAC
1 CGGGCAGTTGCATCCAACACCATCGACACATGCTGGCCCGTGGTGCGGGGAGTTGCCTCAACCAC
71753 CATCGACACA
66 CATCGACACA
71763 TACCGAGCAC
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
89 1 0.02
90 62 0.98
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.19
Consensus pattern (90 bp):
CGGGCAGTTGCATCCAACACCATCGACACATGCTGGCCCGTGGTGCGGGGAGTTGCCTCAACCAC
CATCGACACAAGATGGACCCTAGTG
Found at i:71763 original size:45 final size:45
Alignment explanation
Indices: 71547--71763 Score: 193
Period size: 45 Copynumber: 4.8 Consensus size: 45
71537 AGGCTGCCCT
* * * * * * *
71547 TTGGTACGGGCACTTGCCTCGATCGCCATCGGCACAAGCTAGGCC
1 TTGGTGCGGGCAGTTGCCTCGACCACCATCGACACATGCTGGGCC
* * * *
71592 TTGGTACGGGCAGTTGCCTCGATCACCATCGATACATGCTGGCCC
1 TTGGTGCGGGCAGTTGCCTCGACCACCATCGACACATGCTGGGCC
* * * *
71637 TTGGTGCGGGC-GATTGCCTCAACCACCATCGACACAAGATGGACC
1 TTGGTGCGGGCAG-TTGCCTCGACCACCATCGACACATGCTGGGCC
* * * * * * *
71682 CTAGTGCGGGCGGTTGCATCCAACACCATCGGCACATGCTGGGCC
1 TTGGTGCGGGCAGTTGCCTCGACCACCATCGACACATGCTGGGCC
* * *
71727 GTGGTGTGGGTAGTTGCCTCGACCACCATCGACACAT
1 TTGGTGCGGGCAGTTGCCTCGACCACCATCGACACAT
71764 ACCGAGCACC
Statistics
Matches: 138, Mismatches: 32, Indels: 4
0.79 0.18 0.02
Matches are distributed among these distances:
44 1 0.01
45 136 0.99
46 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.21
Consensus pattern (45 bp):
TTGGTGCGGGCAGTTGCCTCGACCACCATCGACACATGCTGGGCC
Found at i:74679 original size:45 final size:45
Alignment explanation
Indices: 74625--74825 Score: 197
Period size: 45 Copynumber: 4.5 Consensus size: 45
74615 CACTTACCTT
* * *
74625 GACCGCCATCGGCACAAGCTGGGCCTTGGTGCAGGCGATTGCCTT
1 GACCACCATCGGCACATGCTGGGCCTTGGTGCAGGCGATTGCCTC
* ** * * * *
74670 GATCACCATCAACACATGCCGGCCCTTGGTGCGGGCGATTACCTC
1 GACCACCATCGGCACATGCTGGGCCTTGGTGCAGGCGATTGCCTC
* * * * * *
74715 GACCACCATCGGCACAAGAT-GGCCTTTAGTGCAGGGGGTTGCATC
1 GACCACCATCGGCACATGCTGGGCC-TTGGTGCAGGCGATTGCCTC
* * * *
74760 AAACACCATCGGCACATGCTGGGCCATGGTGCAGGCGGTTGCCTC
1 GACCACCATCGGCACATGCTGGGCCTTGGTGCAGGCGATTGCCTC
*
74805 AACCACCATCGGCACATGCTG
1 GACCACCATCGGCACATGCTG
74826 AGCCCCAATC
Statistics
Matches: 122, Mismatches: 32, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
44 3 0.02
45 115 0.94
46 4 0.03
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.19
Consensus pattern (45 bp):
GACCACCATCGGCACATGCTGGGCCTTGGTGCAGGCGATTGCCTC
Found at i:74767 original size:90 final size:90
Alignment explanation
Indices: 74605--74820 Score: 220
Period size: 90 Copynumber: 2.4 Consensus size: 90
74595 AGGCTGTCCT
* * * * * *
74605 TTGGTACGGGC-ACTTACCTTGACCGCCATCGGCACAAGCTGGGCCTTGGTGCAGGCGATTGCCT
1 TTGGTGCGGGCGA-TTACCTCGACCACCATCGGCACAAGATGGGCCTTAGTGCAGGCGATTGCAT
** *
74669 TGATCACCATCAACACATGCCGGCCC
65 CAAACACCATCAACACATGCCGGCCC
* *
74695 TTGGTGCGGGCGATTACCTCGACCACCATCGGCACAAGAT-GGCCTTTAGTGCAGGGGGTTGCAT
1 TTGGTGCGGGCGATTACCTCGACCACCATCGGCACAAGATGGGCC-TTAGTGCAGGCGATTGCAT
** * *
74759 CAAACACCATCGGCACATGCTGGGCC
65 CAAACACCATCAACACATGCCGGCCC
* * * * *
74785 ATGGTGCAGGCGGTTGCCTCAACCACCATCGGCACA
1 TTGGTGCGGGCGATTACCTCGACCACCATCGGCACA
74821 TGCTGAGCCC
Statistics
Matches: 104, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
89 4 0.04
90 99 0.95
91 1 0.01
ACGTcount: A:0.20, C:0.31, G:0.28, T:0.20
Consensus pattern (90 bp):
TTGGTGCGGGCGATTACCTCGACCACCATCGGCACAAGATGGGCCTTAGTGCAGGCGATTGCATC
AAACACCATCAACACATGCCGGCCC
Found at i:75295 original size:26 final size:26
Alignment explanation
Indices: 75251--75303 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
75241 TCAATCCAAT
*
75251 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGAAATAAACTCCGTATG
*
75277 CTTAGACTGGAAATTAACTCCGTATG
1 CTTAGACTGGAAATAAACTCCGTATG
75303 C
1 C
75304 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATAAACTCCGTATG
Found at i:75646 original size:26 final size:26
Alignment explanation
Indices: 75606--75658 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
75596 CCAATCTGAT
75606 CTTAGACTAGAAATGAACTTCGTATG
1 CTTAGACTAGAAATGAACTTCGTATG
* *
75632 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGAAATGAACTTCGTATG
75658 C
1 C
75659 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTTCGTATG
Found at i:75784 original size:196 final size:196
Alignment explanation
Indices: 75435--75788 Score: 434
Period size: 196 Copynumber: 1.8 Consensus size: 196
75425 TCTGACTAGG
* * *
75435 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCATACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGAGCTCAG
* * * * *
75500 CCGACCGAAGAGGCAGAATGCGCAATCTGGGGATCAGCCCGGTCCCCCTTTTATGCTATTGATCC
66 CCGACCGAAGAGGAAGAATGCGCAATCTGGGGATCAACCCGATCCCCCTTGTATGCTATCGATCC
75565 TACTACTGGTACTACTACCACAACCCTCGGTCCAATCTGATCTTAGACTAGAAATGAACTTCGTA
131 TACTACTGGTACTACTACCACAACCCTCGGTCCAATCTGATCTTAGACTAGAAATGAACTTCGTA
75630 T
196 T
* * *
75631 GCTTAGAC-TGGGAATGAACT-TCGTATGCCTAAGTCAACCCATAAAACGAGCGTACGGGAGCTC
1 GCTTAGACAT-GGAATGAACTCT-GTATGCCTAAGCCAACCCACAAAACGAGCATACGGGAGCTC
* * *
75694 AGCCGGCC-AGAGAGGTAAGATATGC-CAATC-GGGGATCAACCCGAT-CCCCTCTGTGTGCTGT
64 AGCCGACCGA-AGAGG-AAGA-ATGCGCAATCTGGGGATCAACCCGATCCCCCT-TGTATGCTAT
* * * *
75755 CGATCCTGCT-GTGGGTCCTACTGCCACAACCCTC
125 CGATCCTACTACT-GGTACTACTACCACAACCCTC
75789 AGTCTGGTCC
Statistics
Matches: 133, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
195 9 0.07
196 112 0.84
197 8 0.06
198 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGAGCTCAG
CCGACCGAAGAGGAAGAATGCGCAATCTGGGGATCAACCCGATCCCCCTTGTATGCTATCGATCC
TACTACTGGTACTACTACCACAACCCTCGGTCCAATCTGATCTTAGACTAGAAATGAACTTCGTA
T
Found at i:76783 original size:10 final size:10
Alignment explanation
Indices: 76764--76806 Score: 50
Period size: 10 Copynumber: 4.0 Consensus size: 10
76754 TCGACCATCA
76764 ATGGCACATG
1 ATGGCACATG
*
76774 ATGGCGCATGGTG
1 ATGGCACA---TG
76787 ATGGCACATG
1 ATGGCACATG
76797 ATGGCACATG
1 ATGGCACATG
76807 GTGATGGCAC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
10 19 0.68
13 9 0.32
ACGTcount: A:0.26, C:0.19, G:0.35, T:0.21
Consensus pattern (10 bp):
ATGGCACATG
Found at i:76790 original size:13 final size:13
Alignment explanation
Indices: 76772--76819 Score: 66
Period size: 13 Copynumber: 3.9 Consensus size: 13
76762 CAATGGCACA
*
76772 TGATGGCGCATGG
1 TGATGGCACATGG
76785 TGATGGCACA---
1 TGATGGCACATGG
76795 TGATGGCACATGG
1 TGATGGCACATGG
76808 TGATGGCACATG
1 TGATGGCACATG
76820 CATCAACCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
10 10 0.32
13 21 0.68
ACGTcount: A:0.23, C:0.17, G:0.38, T:0.23
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:76794 original size:23 final size:23
Alignment explanation
Indices: 76764--76819 Score: 103
Period size: 23 Copynumber: 2.4 Consensus size: 23
76754 TCGACCATCA
*
76764 ATGGCACATGATGGCGCATGGTG
1 ATGGCACATGATGGCACATGGTG
76787 ATGGCACATGATGGCACATGGTG
1 ATGGCACATGATGGCACATGGTG
76810 ATGGCACATG
1 ATGGCACATG
76820 CATCAACCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.25, C:0.18, G:0.36, T:0.21
Consensus pattern (23 bp):
ATGGCACATGATGGCACATGGTG
Found at i:76954 original size:45 final size:45
Alignment explanation
Indices: 76862--76969 Score: 128
Period size: 45 Copynumber: 2.4 Consensus size: 45
76852 GTACGGGCAC
* * *
76862 TTGCCTCGACCACCATCGGCACAAGGTGGGCCTTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCTCGGTGCGAGCGG
* *
76907 TTGCCTCGACCACCATCGGCACAAGAT-GGCCATCGGTGTGAGTGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCC-TCGGTGCGAGCGG
* * *
76952 TTGCATCGAACACAATCG
1 TTGCCTCGACCACCATCG
76970 ACATATGTCG
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
44 4 0.07
45 50 0.93
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.19
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGATGGGCCTCGGTGCGAGCGG
Found at i:77995 original size:169 final size:168
Alignment explanation
Indices: 77735--78039 Score: 425
Period size: 169 Copynumber: 1.8 Consensus size: 168
77725 CAGGATGCGT
* *
77735 AAGCCAGGGATTGACCCGATCCCCTCTGCATGCTTTTGATCCTGCTGCAGCTCCTGCGGTAGCAA
1 AAGCCAGGGATCGACCCGATCCCCTCTGCATGCTGTTGATCCTGCTGCAGCTCCTGC-GTAGCAA
* * * *
77800 CCCTTAGTCTGGTTCAATCATAGACTGGGAGCGCACTACGTATGCCTAAGTCAACCCATGAAACG
65 CCCTCAGTCCGGTTCAATCATAGACTGGGACCGCACTACGTATCCCTAAGTCAACCCATGAAACG
77865 AGCGTGTAGTGCCTCACCAGCCAAAGAGGCAAGATGTAC
130 AGCGTGTAGTGCCTCACCAGCCAAAGAGGCAAGATGTAC
* * * * * *
77904 AAGCCAGGGATCGACCCGATCCCTTCTGCGTGCTGTTGAT-CTCGTTGCGGGTCCTGC-TATCAT
1 AAGCCAGGGATCGACCCGATCCCCTCTGCATGCTGTTGATCCT-GCTGCAGCTCCTGCGTAGC--
* * *
77967 AACCCTCAGTCCGGTTCGATCTTAGACTGGGACCGCACTATGTATCCCTAAGTCAACCCATGAAA
63 AACCCTCAGTCCGGTTCAATCATAGACTGGGACCGCACTACGTATCCCTAAGTCAACCCATGAAA
78032 CGAGCGTG
128 CGAGCGTG
78040 CGGACACTTA
Statistics
Matches: 118, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
167 3 0.03
168 2 0.02
169 113 0.96
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.23
Consensus pattern (168 bp):
AAGCCAGGGATCGACCCGATCCCCTCTGCATGCTGTTGATCCTGCTGCAGCTCCTGCGTAGCAAC
CCTCAGTCCGGTTCAATCATAGACTGGGACCGCACTACGTATCCCTAAGTCAACCCATGAAACGA
GCGTGTAGTGCCTCACCAGCCAAAGAGGCAAGATGTAC
Found at i:78584 original size:18 final size:16
Alignment explanation
Indices: 78547--78580 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
78537 CGCACACCCC
*
78547 TCGGACCCCCCAATCG
1 TCGGAACCCCCAATCG
78563 TCGGAACCCCCAAT-G
1 TCGGAACCCCCAATCG
78578 TCG
1 TCG
78581 TCGGTTAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.21, C:0.44, G:0.21, T:0.15
Consensus pattern (16 bp):
TCGGAACCCCCAATCG
Found at i:79541 original size:170 final size:170
Alignment explanation
Indices: 79249--79646 Score: 446
Period size: 170 Copynumber: 2.3 Consensus size: 170
79239 TCGATTGGGG
*
79249 CTTAGA-TCGGGAATGAACTCAATATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCGA
1 CTTAGACT-GGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCGA
* ** * * * * *
79313 CCGGCTGGAGAGGCAGAATGCGCAAGCCTGGGATTAGCCCAGTCCCCACTACGTGCTGTCGATCC
65 CCAGCCAGAGAGGCAGAATGCACAAGCCGGGGATCAACCCAGTCCCCACTACGTGCTGTCAATCC
* *
79378 TACTGCT-GGTCCTGCTACCGCAACCCTTAGTTCGGTCCGAT
130 CACTG-TGGGTCCTACTACCGCAACCCTTAGTTCGGTCCGAT
* ** * *
79419 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAGCCACGAAATTAGCGTGCTGGCGCTC-AG
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCGA-
* * * * **
79483 CCAGCCAGCGAGGTAGGATGCACAAGCCGGGGATCAACCCAGTCCCCTCTGTGTGCTGTCAATCC
65 CCAGCCAGAGAGGCAGAATGCACAAGCCGGGGATCAACCCAGTCCCCACTACGTGCTGTCAATCC
* * *
79548 CACTGTGGGTCCTACTACTGCAACCCTTGGTTCGGTCTGAT
130 CACTGTGGGTCCTACTACCGCAACCCTTAGTTCGGTCCGAT
* * * * *
79589 CTTAGACTGAG-A-GCACACTACATATGCCTAAGTCAACCAAGGAAACGAGCGTGCGGGC
1 CTTAGACTGGGAATG-A-ACTCCATATGCCTAAGTCAACCCACGAAACGAGCATGCGGGC
79647 ACTTAGCTAG
Statistics
Matches: 190, Mismatches: 33, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
168 1 0.01
169 4 0.02
170 184 0.97
171 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (170 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCGAC
CAGCCAGAGAGGCAGAATGCACAAGCCGGGGATCAACCCAGTCCCCACTACGTGCTGTCAATCCC
ACTGTGGGTCCTACTACCGCAACCCTTAGTTCGGTCCGAT
Found at i:80558 original size:90 final size:90
Alignment explanation
Indices: 80389--80582 Score: 237
Period size: 90 Copynumber: 2.2 Consensus size: 90
80379 CGGGCACTTG
* * * * *
80389 CCTCAACCACCATCGGCACAAGCTGGGCCCTAGTACGGGCGGTTGCCTCGATCACCATCGGCACA
1 CCTCAACCACCATCAGCACAAGATGGGCCCTAGTACGGGCGGTTACATCGAACACCATCGGCACA
*
80454 TGCCGGCCCTTGGTGCGGGCGATTA
66 TGCCGGCCCGTGGTGCGGGCGATTA
*
80479 CCTCAACCACCATCAGCACAAGAT-GGCCTCTAGTGCGGGCGGTTACATCGAACACCATCGGCAC
1 CCTCAACCACCATCAGCACAAGATGGGCC-CTAGTACGGGCGGTTACATCGAACACCATCGGCAC
* ** * * * *
80543 ATGCTGGGTCGTGGTGTGGGTGGTTG
65 ATGCCGGCCCGTGGTGCGGGCGATTA
*
80569 CCTCGACCACCATC
1 CCTCAACCACCATC
80583 GACACATGCT
Statistics
Matches: 88, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
89 4 0.05
90 84 0.95
ACGTcount: A:0.19, C:0.34, G:0.28, T:0.19
Consensus pattern (90 bp):
CCTCAACCACCATCAGCACAAGATGGGCCCTAGTACGGGCGGTTACATCGAACACCATCGGCACA
TGCCGGCCCGTGGTGCGGGCGATTA
Found at i:80580 original size:45 final size:44
Alignment explanation
Indices: 80386--80593 Score: 191
Period size: 45 Copynumber: 4.6 Consensus size: 44
80376 GTACGGGCAC
* * *
80386 TTGCCTCAACCACCATCGGCACAAGCTGGGCCCTAGTACGGGCGG
1 TTGCCTCGACCACCATCGGCACATGCT-GGCCCTAGTGCGGGCGG
* * * *
80431 TTGCCTCGATCACCATCGGCACATGCCGGCCCTTGGTGCGGGCGA
1 TTGCCTCGACCACCATCGGCACATGCTGGCCC-TAGTGCGGGCGG
* * * * *
80476 TTACCTCAACCACCATCAGCACAAGATGGCCTCTAGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACATGCTGGCC-CTAGTGCGGGCGG
* * * * * * * *
80521 TTACATCGAACACCATCGGCACATGCTGGGTCGTGGTGTGGGTGG
1 TTGCCTCGACCACCATCGGCACATGCT-GGCCCTAGTGCGGGCGG
*
80566 TTGCCTCGACCACCATCGACACATGCTG
1 TTGCCTCGACCACCATCGGCACATGCTG
80594 AGCCTCGATC
Statistics
Matches: 129, Mismatches: 31, Indels: 7
0.77 0.19 0.04
Matches are distributed among these distances:
44 6 0.05
45 119 0.92
46 4 0.03
ACGTcount: A:0.19, C:0.33, G:0.28, T:0.20
Consensus pattern (44 bp):
TTGCCTCGACCACCATCGGCACATGCTGGCCCTAGTGCGGGCGG
Found at i:82017 original size:45 final size:45
Alignment explanation
Indices: 81960--82076 Score: 119
Period size: 45 Copynumber: 2.6 Consensus size: 45
81950 GGCACATGCA
* *
81960 TCGACCATCATCGGCACAGGCT-GCCCTTTGGTATAGGCACTTCCC
1 TCGACCACCATCGGCACAAGCTGGCCC-TTGGTATAGGCACTTCCC
* * * * * ** *
82005 TCGATCGCCATCGACACAAGCTGGGCCTTGGTGTAGGCGGTTGCC
1 TCGACCACCATCGGCACAAGCTGGCCCTTGGTATAGGCACTTCCC
*
82050 TCGACCACCATCGGCACAAGATGGCCC
1 TCGACCACCATCGGCACAAGCTGGCCC
82077 CTGATGCGAG
Statistics
Matches: 56, Mismatches: 15, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
45 53 0.95
46 3 0.05
ACGTcount: A:0.19, C:0.34, G:0.26, T:0.21
Consensus pattern (45 bp):
TCGACCACCATCGGCACAAGCTGGCCCTTGGTATAGGCACTTCCC
Found at i:82090 original size:45 final size:46
Alignment explanation
Indices: 82041--82152 Score: 102
Period size: 46 Copynumber: 2.5 Consensus size: 46
82031 CTTGGTGTAG
82041 GCGGTTGCCTCGACCACCATC-GGCACAAGAT-GGCCCCTGATGCGA
1 GCGGTTGCCTCGACCACCATCGGGCACAAGATGGGCCCCTG-TGCGA
* * * * * * * ** * *
82086 GCGGTGGCATCAAACACCATCGGGTACATGCTGGGCCGTTGTGTGG
1 GCGGTTGCCTCGACCACCATCGGGCACAAGATGGGCCCCTGTGCGA
82132 GCGGTTGCCTCGACCACCATC
1 GCGGTTGCCTCGACCACCATC
82153 ACTACATGCC
Statistics
Matches: 50, Mismatches: 15, Indels: 3
0.74 0.22 0.04
Matches are distributed among these distances:
45 17 0.34
46 27 0.54
47 6 0.12
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.19
Consensus pattern (46 bp):
GCGGTTGCCTCGACCACCATCGGGCACAAGATGGGCCCCTGTGCGA
Found at i:82150 original size:46 final size:44
Alignment explanation
Indices: 82003--82152 Score: 129
Period size: 45 Copynumber: 3.3 Consensus size: 44
81993 TAGGCACTTC
* * * *
82003 CCTCGATCGCCATCGACACAAGCTGGGCCTTGGTGTAGGCGGTTG
1 CCTCGACCACCATCGGCACAAGCTGGGCCTT-GTGTGGGCGGTTG
* * * * * *
82048 CCTCGACCACCATCGGCACAAGATGGCCCCTGATGCGAGCGGTGG
1 CCTCGACCACCATCGGCACAAGCTGGGCCTTG-TGTGGGCGGTTG
* * * * *
82093 CATCAAACACCATCGGGTACATGCTGGGCCGTTGTGTGGGCGGTTG
1 CCTCGACCACCATC-GGCACAAGCTGGGCC-TTGTGTGGGCGGTTG
82139 CCTCGACCACCATC
1 CCTCGACCACCATC
82153 ACTACATGCC
Statistics
Matches: 78, Mismatches: 24, Indels: 5
0.73 0.22 0.05
Matches are distributed among these distances:
44 1 0.01
45 44 0.56
46 31 0.40
47 2 0.03
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.19
Consensus pattern (44 bp):
CCTCGACCACCATCGGCACAAGCTGGGCCTTGTGTGGGCGGTTG
Found at i:82682 original size:26 final size:25
Alignment explanation
Indices: 82612--82689 Score: 111
Period size: 26 Copynumber: 3.0 Consensus size: 25
82602 CCATTTCGAT
*
82612 CTTAGATTGGGAATGAACTTTGTATG
1 CTTAGA-TGGGAATGAACTCTGTATG
* *
82638 CTTAGATTGGAATGAACTCCGTATG
1 CTTAGATGGGAATGAACTCTGTATG
82663 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGA-TGGGAATGAACTCTGTATG
82689 C
1 C
82690 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 22 0.48
26 24 0.52
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (25 bp):
CTTAGATGGGAATGAACTCTGTATG
Found at i:82955 original size:158 final size:158
Alignment explanation
Indices: 82662--82948 Score: 364
Period size: 158 Copynumber: 1.8 Consensus size: 158
82652 AACTCCGTAT
* * * *
82662 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAG
1 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGACCGTACGGGCACTCAG
** * * * * * *
82727 CCGGTCGGAGAGGCATAATGCACAAATCGGGTATCGACCTGATCCCCTCTGCATGCTGTCGATCT
66 CCGACCAGAGAGGCAGAATGCACAAATCGGGGATCGACCTGATCCCCCCTACATACTGTCGATCT
82792 CGCTGCCACAACCTTCTGTCTGGCTGGG
131 CGCTGCCACAACCTTCTGTCTGGCTGGG
* *
82820 GCTTAGACAT-GGATTGAACTCTGTATGCCTAAGCCAACCCATGAAACGACCGTACGGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGACCGTACGGGCACTCA
* * * *
82884 GTCGACCAGAGAGGTAGAATGCACAAA-CTGGGGATCGA-CTCGGTCCCCCCTACGTACTGTCGA
65 GCCGACCAGAGAGGCAGAATGCACAAATC-GGGGATCGACCT-GATCCCCCCTACATACTGTCGA
82947 TC
128 TC
82949 CTGCTGCTGG
Statistics
Matches: 108, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
157 3 0.03
158 104 0.96
159 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGACCGTACGGGCACTCAG
CCGACCAGAGAGGCAGAATGCACAAATCGGGGATCGACCTGATCCCCCCTACATACTGTCGATCT
CGCTGCCACAACCTTCTGTCTGGCTGGG
Found at i:83020 original size:26 final size:26
Alignment explanation
Indices: 82991--83043 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
82981 CCGGTCTGAT
82991 CTTAGACTAGGAATGAACT-CTGTATG
1 CTTAGACTAGGAATGAACTGC-GTATG
* *
83017 CTTAGACTGGGGATGAACTGCGTATG
1 CTTAGACTAGGAATGAACTGCGTATG
83043 C
1 C
83044 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTGCGTATG
Found at i:83159 original size:196 final size:196
Alignment explanation
Indices: 82834--83197 Score: 457
Period size: 196 Copynumber: 1.9 Consensus size: 196
82824 AGACATGGAT
* * *
82834 TGAACTCTGTATGCCTAAGCCAACCCATGAAACGACCGTACGGGCACTCAGTCGACCAGAGAGGT
1 TGAACTCTGTATGCCAAAGCCAACCCACGAAACGACCGTACGGGCACTCAGCCGACCAGAGAGGT
* * * *
82899 AGAATGCACAAACTGGGGATCGACTCGGTCCCCCCTACGTACTGTCGATCCTGCTGCTGGTCCTG
66 AGAATGCACAAACCGGGGATCGACTCGATCCCCCCTACGTACTGTCGATCCCGCTGATGGTCCTG
* * * * *
82964 CTATCGTAATCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGG
131 CTACCGCAACCCTCGGTCAGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGG
83029 A
196 A
* * * **
83030 TGAACTGC-GTATGCCAAAGTCAACCCACGAAATGAGCGTACGGGTGCTCAGCCGACCAGAGAGG
1 TGAACT-CTGTATGCCAAAGCCAACCCACGAAACGACCGTACGGGCACTCAGCCGACCAGAGAGG
* ** * * *
83094 TAGGATGTGCAAGCCGGGGATCGAC-CTGATCCCCTCTACGTGCTGTTC-ATCCCGCT-ATGGGT
65 TAGAATGCACAAACCGGGGATCGACTC-GATCCCCCCTACGTACTG-TCGATCCCGCTGAT-GGT
83156 CCTGCTACCGCAACCCTCGGTCAGGTCCGATCTTAGACTAGG
127 CCTGCTACCGCAACCCTCGGTCAGGTCCGATCTTAGACTAGG
83198 GGCGCACTAT
Statistics
Matches: 141, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
195 2 0.01
196 136 0.96
197 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (196 bp):
TGAACTCTGTATGCCAAAGCCAACCCACGAAACGACCGTACGGGCACTCAGCCGACCAGAGAGGT
AGAATGCACAAACCGGGGATCGACTCGATCCCCCCTACGTACTGTCGATCCCGCTGATGGTCCTG
CTACCGCAACCCTCGGTCAGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGG
A
Found at i:84657 original size:26 final size:26
Alignment explanation
Indices: 84628--84681 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
84618 GGTCCGATTT
84628 TAGACTGGAAATGAACTCCGTATGCC
1 TAGACTGGAAATGAACTCCGTATGCC
* *
84654 TAGACTGGGAATGAACTTCGTATGCC
1 TAGACTGGAAATGAACTCCGTATGCC
84680 TA
1 TA
84682 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
TAGACTGGAAATGAACTCCGTATGCC
Found at i:85956 original size:45 final size:45
Alignment explanation
Indices: 85907--86026 Score: 132
Period size: 45 Copynumber: 2.7 Consensus size: 45
85897 AGTTGGGTCT
* * * *
85907 TGGTGTGGGAGGTTGCCTTGACCACCATCGGCATAAGATGGCCCC
1 TGGTGCGGGCGGTTGCCTCGACCACCATCGGCACAAGATGGCCCC
* * * * * * *
85952 TGGTGCGGGCGGTTGCATCGAACACCATTGGCACATGCTGGGCCG
1 TGGTGCGGGCGGTTGCCTCGACCACCATCGGCACAAGATGGCCCC
*
85997 TGGTACGGGCGGTTGCCTCGACCACCATCG
1 TGGTGCGGGCGGTTGCCTCGACCACCATCG
86027 ATCCGGTCTG
Statistics
Matches: 60, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 60 1.00
ACGTcount: A:0.16, C:0.28, G:0.35, T:0.21
Consensus pattern (45 bp):
TGGTGCGGGCGGTTGCCTCGACCACCATCGGCACAAGATGGCCCC
Found at i:86517 original size:25 final size:26
Alignment explanation
Indices: 86473--86524 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
86463 CCAGTCCGAT
*
86473 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
86499 CTTAGACTAGG-ATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
86524 C
1 C
86525 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:88053 original size:26 final size:26
Alignment explanation
Indices: 88017--88069 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
88007 CCGGTCCTAT
88017 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
88043 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
88069 C
1 C
88070 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:88410 original size:26 final size:26
Alignment explanation
Indices: 88371--88424 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
88361 GGTCCGATCT
*
88371 TAGACTGGGAATGAACTTCGCATGCC
1 TAGACTGGGAATGAACTCCGCATGCC
* *
88397 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGCATGCC
88423 TA
1 TA
88425 AGTAAACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGCATGCC
Found at i:89450 original size:26 final size:26
Alignment explanation
Indices: 89420--89471 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
89410 TGGTCTGATA
89420 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
* *
89446 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
89472 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:90582 original size:26 final size:26
Alignment explanation
Indices: 90553--90602 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
90543 CCGATCCGAT
90553 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
90579 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
90603 CGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:91498 original size:13 final size:13
Alignment explanation
Indices: 91480--91504 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91470 AAATGGCACA
91480 TGATGGCACATGG
1 TGATGGCACATGG
91493 TGATGGCACATG
1 TGATGGCACATG
91505 CATCGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:91635 original size:45 final size:44
Alignment explanation
Indices: 91550--91658 Score: 114
Period size: 45 Copynumber: 2.4 Consensus size: 44
91540 CGGGTACTTA
* * * *
91550 CCTCAACCGCCATAGCACAAGTTGGGCCCTGGTACAGGCGGTTG
1 CCTCAACCACCATGGCACAAGATGGCCCCTGGTACAGGCGGTTG
*
91594 CCTCAACCACCATCGGCACAAGATGGCCCCTGGTGA-GGGCGGTTG
1 CCTCAACCACCAT-GGCACAAGATGGCCCCTGGT-ACAGGCGGTTG
*
91639 CATCGAA-CACCATTGGCACA
1 CCTC-AACCACCA-TGGCACA
91659 TGCCGAGCCC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
44 12 0.22
45 39 0.71
46 4 0.07
ACGTcount: A:0.23, C:0.33, G:0.28, T:0.17
Consensus pattern (44 bp):
CCTCAACCACCATGGCACAAGATGGCCCCTGGTACAGGCGGTTG
Found at i:92465 original size:26 final size:26
Alignment explanation
Indices: 92429--92481 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
92419 CCATTCCGAT
*
92429 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
*
92455 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
92481 C
1 C
92482 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:93518 original size:45 final size:44
Alignment explanation
Indices: 93452--93557 Score: 113
Period size: 45 Copynumber: 2.4 Consensus size: 44
93442 GTGCAAGCTG
* * * * * *
93452 GGCCCTGGTGCAGACGGTTGCCTCAATCACCATCGACACATGCC
1 GGCCCTGGTGCGGGCGATTGCCTCAACCACCATCGACACAAGAC
* * *
93496 GGCCCTTGGTGCGGGCGATTGCCTCGACCACCATCGGCACAAGAT
1 GGCCC-TGGTGCGGGCGATTGCCTCAACCACCATCGACACAAGAC
93541 GGCCCCTGGTGCGGGCG
1 GG-CCCTGGTGCGGGCG
93558 GTAGCATCGA
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
44 5 0.10
45 43 0.84
46 3 0.06
ACGTcount: A:0.16, C:0.35, G:0.32, T:0.17
Consensus pattern (44 bp):
GGCCCTGGTGCGGGCGATTGCCTCAACCACCATCGACACAAGAC
Found at i:99969 original size:26 final size:26
Alignment explanation
Indices: 99917--99969 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
99907 TCGGTCTGAT
* *
99917 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
*
99943 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
99969 C
1 C
99970 CGAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:100314 original size:26 final size:26
Alignment explanation
Indices: 100273--100325 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
100263 CCAGTTTGAT
100273 CTTAGACTGAGAATGAACTCCGGATG
1 CTTAGACTGAGAATGAACTCCGGATG
* * *
100299 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGGATG
100325 C
1 C
100326 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGGATG
Found at i:101848 original size:136 final size:136
Alignment explanation
Indices: 101604--101855 Score: 339
Period size: 136 Copynumber: 1.9 Consensus size: 136
101594 CTGATTGGGG
* * * *
101604 CTTAGATCGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGTGCTTAGT
1 CTTAGATCGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATGCAGGCGCTTAGC
** **
101669 CGACCAGAGAGGCATGGTGTGCAAGCCAAGGATCAGCCCGGTCCCCCTCTGCGTGTTGCTGCCGG
66 CGACCAGAGAGGCATAATACGCAAGCCAAGGATCAGCCCGGTCCCCCTCTGCGTGTTGCTGCCGG
101734 TTCGAT
131 TTCGAT
* * * *
101740 CTTAGA-CTGGGAATGAACTCCGTATGCCTAAGTGAACCCATGAAACGAGCGTGCAGGCG-TTGA
1 CTTAGATC-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATGCAGGCGCTT-A
*
101803 GCC-AGCCAGAGAGGCATAATACGCAAGTCAAGGATCAGCCCGGTCCCCCTCTG
64 GCCGA-CCAGAGAGGCATAATACGCAAGCCAAGGATCAGCCCGGTCCCCCTCTG
101856 TGCGCTGTAG
Statistics
Matches: 100, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
135 4 0.04
136 96 0.96
ACGTcount: A:0.25, C:0.27, G:0.28, T:0.19
Consensus pattern (136 bp):
CTTAGATCGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATGCAGGCGCTTAGC
CGACCAGAGAGGCATAATACGCAAGCCAAGGATCAGCCCGGTCCCCCTCTGCGTGTTGCTGCCGG
TTCGAT
Found at i:102105 original size:26 final size:26
Alignment explanation
Indices: 102069--102121 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
102059 CCAATCTGAT
*
102069 CTTAGACT-GGGACTGAACTCCGTATG
1 CTTAGACTGGGGA-TGAACTCCGCATG
102095 CTTAGACTGGGGATGAACTCCGCATG
1 CTTAGACTGGGGATGAACTCCGCATG
102121 C
1 C
102122 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGCATG
Found at i:103003 original size:13 final size:13
Alignment explanation
Indices: 102985--103009 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
102975 CAATGGCACA
102985 TGATGGCACATGG
1 TGATGGCACATGG
102998 TGATGGCACATG
1 TGATGGCACATG
103010 CATCGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:103201 original size:45 final size:44
Alignment explanation
Indices: 103052--103202 Score: 151
Period size: 45 Copynumber: 3.4 Consensus size: 44
103042 GTACGGGCAC
* *
103052 TTGCCTCGACCACCA-CGGGCACAAGTTGGGCCCTGGTGTGGGTGG
1 TTGCCTCGACCACCATC-GGCACAAG-TGGCCCCTGGTGCGGGTGG
* * * * * * *
103097 TTGCCTCGATCACCATTGGTACATGTCGCCCTTGGTGCGGGTGA
1 TTGCCTCGACCACCATCGGCACAAGTGGCCCCTGGTGCGGGTGG
* *
103141 TTACCTCGACCACCATCGGCACAAGATGGCCCCTGGTACGGGTGG
1 TTGCCTCGACCACCATCGGCACAAG-TGGCCCCTGGTGCGGGTGG
* *
103186 TTGCATCGAACACCATC
1 TTGCCTCGACCACCATC
103203 AGCTCGAGGC
Statistics
Matches: 83, Mismatches: 21, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
44 34 0.41
45 49 0.59
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.23
Consensus pattern (44 bp):
TTGCCTCGACCACCATCGGCACAAGTGGCCCCTGGTGCGGGTGG
Found at i:103316 original size:26 final size:26
Alignment explanation
Indices: 103277--103327 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
103267 GGTCTAATCG
103277 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
103303 TAGACTAGGG-ATGAACTCTGTATGC
1 TAGACT-GGGAATGAACTCCGTATGC
103328 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:103806 original size:26 final size:26
Alignment explanation
Indices: 103767--103819 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
103757 TCGGTCCGAT
*
103767 CTTAGACTGAGAATGAAC-TCTATATG
1 CTTAGAATGAGAATGAACTTC-ATATG
*
103793 CTTAGAATGGGAATGAACTTCATATG
1 CTTAGAATGAGAATGAACTTCATATG
103819 C
1 C
103820 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGAATGAGAATGAACTTCATATG
Found at i:104895 original size:13 final size:13
Alignment explanation
Indices: 104877--104901 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
104867 CAATGGCACA
104877 TGATGGCGCATGG
1 TGATGGCGCATGG
104890 TGATGGCGCATG
1 TGATGGCGCATG
104902 CATCGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.44, T:0.24
Consensus pattern (13 bp):
TGATGGCGCATGG
Done.