Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168487.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_85, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 107766
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Found at i:3595 original size:64 final size:64
Alignment explanation
Indices: 3467--3595 Score: 154
Period size: 64 Copynumber: 2.0 Consensus size: 64
3457 TCCATTAAAC
* * * * * * **
3467 TTTTAACAATGATTAGAATAATAGATGAATTTAAAATATTTTAAAAGGTTGTGTTCTATTAAAT
1 TTTTAACAATGATTAGAATAATAGATGAACTTAAAACATTTTAAAAAGTCGTGTACAAAAAAAT
3531 TTTTAACAATGATT-GAAATAATAGATGAACTTAAAACATTTTAAAAAGTCGT-TCACAAAAAAA
1 TTTTAACAATGATTAG-AATAATAGATGAACTTAAAACATTTTAAAAAGTCGTGT-ACAAAAAAA
3594 T
64 T
3595 T
1 T
3596 GACTTTTATA
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
63 2 0.04
64 53 0.96
ACGTcount: A:0.46, C:0.06, G:0.11, T:0.37
Consensus pattern (64 bp):
TTTTAACAATGATTAGAATAATAGATGAACTTAAAACATTTTAAAAAGTCGTGTACAAAAAAAT
Found at i:11346 original size:18 final size:18
Alignment explanation
Indices: 11323--11370 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
11313 TTTTTATTAT
11323 TTATTAATTTAATTAAAA
1 TTATTAATTTAATTAAAA
* * *
11341 TTATT-ATTTTATTTATA
1 TTATTAATTTAATTAAAA
11358 TATATTAATTTAA
1 T-TATTAATTTAA
11371 ACTTGAATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
17 10 0.42
18 9 0.38
19 5 0.21
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
TTATTAATTTAATTAAAA
Found at i:13154 original size:16 final size:16
Alignment explanation
Indices: 13130--13163 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
13120 TTGTAAACAT
*
13130 TTATGTATTATATATC
1 TTATATATTATATATC
*
13146 TTATATATTATTTATC
1 TTATATATTATATATC
13162 TT
1 TT
13164 TTTAATATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.62
Consensus pattern (16 bp):
TTATATATTATATATC
Found at i:13803 original size:11 final size:12
Alignment explanation
Indices: 13787--13823 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
13777 AAACTTAAAG
13787 ATTAAAATTT-A
1 ATTAAAATTTGA
13798 ATT-AAATTTGA
1 ATTAAAATTTGA
*
13809 ATTAAATTTTGA
1 ATTAAAATTTGA
13821 ATT
1 ATT
13824 GAACTCAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
10 6 0.26
11 7 0.30
12 10 0.43
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (12 bp):
ATTAAAATTTGA
Found at i:14447 original size:21 final size:21
Alignment explanation
Indices: 14418--14475 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
14408 ATTCAAAATT
14418 ATAATATATGTACATTTAGTTG
1 ATAA-ATATGTACATTTAGTTG
* * * *
14440 ATAAATATGTATAATTATTTT
1 ATAAATATGTACATTTAGTTG
14461 ATAAAATATGTACAT
1 AT-AAATATGTACAT
14476 CCAAAGAATA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
21 15 0.52
22 14 0.48
ACGTcount: A:0.43, C:0.03, G:0.09, T:0.45
Consensus pattern (21 bp):
ATAAATATGTACATTTAGTTG
Found at i:14676 original size:22 final size:19
Alignment explanation
Indices: 14642--14690 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 19
14632 ATTATATCTT
* *
14642 TTTTTTACATTTAAATTTAAA
1 TTTTTTATATTTAAAATT--A
14663 TTTTTTATATTTTAAAATTA
1 TTTTTTATA-TTTAAAATTA
14683 TTTTTTAT
1 TTTTTTAT
14691 TGTTTATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 9 0.36
21 8 0.32
22 8 0.32
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTTTTATATTTAAAATTA
Found at i:14687 original size:21 final size:21
Alignment explanation
Indices: 14641--14688 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
14631 AATTATATCT
*
14641 TTTTTTTACATTTAAATTTAA
1 TTTTTTTACATTTAAAATTAA
* *
14662 ATTTTTTATATTTTAAAATT-A
1 TTTTTTTACA-TTTAAAATTAA
14683 TTTTTT
1 TTTTTT
14689 ATTGTTTATT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTTTTACATTTAAAATTAA
Found at i:17343 original size:18 final size:19
Alignment explanation
Indices: 17302--17344 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
17292 AAATGACTTT
*
17302 TTTTTTATTACTAGAATCA
1 TTTTTTATAACTAGAATCA
* *
17321 TTTTTTATAAGTAGAATGA
1 TTTTTTATAACTAGAATCA
17340 TTTTT
1 TTTTT
17345 CATATCAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.30, C:0.05, G:0.09, T:0.56
Consensus pattern (19 bp):
TTTTTTATAACTAGAATCA
Found at i:18241 original size:22 final size:23
Alignment explanation
Indices: 18206--18252 Score: 78
Period size: 22 Copynumber: 2.1 Consensus size: 23
18196 CAATGTTACA
*
18206 TTCATTCATAAAAATTTATGTTG
1 TTCATTCACAAAAATTTATGTTG
18229 TTCA-TCACAAAAATTTATGTTG
1 TTCATTCACAAAAATTTATGTTG
18251 TT
1 TT
18253 AATGTTGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.34, C:0.11, G:0.09, T:0.47
Consensus pattern (23 bp):
TTCATTCACAAAAATTTATGTTG
Found at i:20679 original size:22 final size:22
Alignment explanation
Indices: 20651--20711 Score: 86
Period size: 22 Copynumber: 2.8 Consensus size: 22
20641 TGTACTTAAT
* *
20651 ATAACTTAGTAGTAAATTAGTG
1 ATAACTTAGTAGTAAATGAATG
*
20673 ATAACTTAATAGTAAATGAATG
1 ATAACTTAGTAGTAAATGAATG
*
20695 ATAATTTAGTAGTAAAT
1 ATAACTTAGTAGTAAAT
20712 AATTAATAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.46, C:0.03, G:0.15, T:0.36
Consensus pattern (22 bp):
ATAACTTAGTAGTAAATGAATG
Found at i:20720 original size:22 final size:21
Alignment explanation
Indices: 20647--20723 Score: 84
Period size: 22 Copynumber: 3.6 Consensus size: 21
20637 TAAATGTACT
20647 TAAT-ATAACTTAGTAGTAAA
1 TAATGATAACTTAGTAGTAAA
* *
20667 TTAGTGATAACTTAATAGTAAA
1 -TAATGATAACTTAGTAGTAAA
*
20689 TGAATGATAATTTAGTAGTAAA
1 T-AATGATAACTTAGTAGTAAA
*
20711 TAATTAATAACTT
1 TAA-TGATAACTT
20724 TTTGATAAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
21 6 0.13
22 40 0.87
ACGTcount: A:0.47, C:0.04, G:0.12, T:0.38
Consensus pattern (21 bp):
TAATGATAACTTAGTAGTAAA
Found at i:20804 original size:22 final size:22
Alignment explanation
Indices: 20779--21194 Score: 135
Period size: 22 Copynumber: 19.2 Consensus size: 22
20769 ATGGTAAATC
* *
20779 AATTATTGATAATTTAATAATA
1 AATTAATGATAATTTAATAGTA
*
20801 AATTAATGATAATTTAACAGTA
1 AATTAATGATAATTTAATAGTA
* * *
20823 AATTAGTAATGATTTAATAGTA
1 AATTAATGATAATTTAATAGTA
* * *
20845 AATTAGT-TTCAATTTAATAG-C
1 AATTAATGAT-AATTTAATAGTA
*
20866 AATTAATTGAT-A-GT-A-A-TA
1 AATTAA-TGATAATTTAATAGTA
* *
20884 AATCATAA--ATAACTTAATAATA
1 AAT--TAATGATAATTTAATAGTA
** *
20906 AATTAATGATAAAGTAGTAGTA
1 AATTAATGATAATTTAATAGTA
* *
20928 AA-TAATTGATAATTTAGTAGTT
1 AATTAA-TGATAATTTAATAGTA
* * * * *
20950 AATCATTTAAAACTTAA-AGTTA
1 AATTAATGATAATTTAATAG-TA
* * *
20972 AATTAGT-ACAACTTAATAGTA
1 AATTAATGATAATTTAATAGTA
* ** *
20993 AA-TCATCGATAACATAATAGTT
1 AATTAAT-GATAATTTAATAGTA
* * *
21015 AATCAATGATAACTTAATAATA
1 AATTAATGATAATTTAATAGTA
* * * *
21037 AA-TAATTAAAAATTAAGTAGCA
1 AATTAATGATAATTTAA-TAGTA
* ** *
21059 AACTAATGATAAAATAATAGCA
1 AATTAATGATAATTTAATAGTA
* * * *
21081 AA-TATATAAAAATATAACAGTA
1 AATTA-ATGATAATTTAATAGTA
* * *
21103 AATCATTGATAATTTAGTAGTA
1 AATTAATGATAATTTAATAGTA
* * *
21125 AATTATTAATAATGTAATAGTA
1 AATTAATGATAATTTAATAGTA
* * * * *
21147 AAATACTAATAATTTAGTTGTA
1 AATTAATGATAATTTAATAGTA
*
21169 AATCAATGATAATTTAATA-TA
1 AATTAATGATAATTTAATAGTA
21190 AATTA
1 AATTA
21195 GTTAATCATT
Statistics
Matches: 291, Mismatches: 79, Indels: 49
0.69 0.19 0.12
Matches are distributed among these distances:
17 2 0.01
18 5 0.02
19 2 0.01
20 10 0.03
21 43 0.15
22 213 0.73
23 16 0.05
ACGTcount: A:0.50, C:0.05, G:0.09, T:0.36
Consensus pattern (22 bp):
AATTAATGATAATTTAATAGTA
Found at i:21039 original size:65 final size:66
Alignment explanation
Indices: 20892--21078 Score: 148
Period size: 65 Copynumber: 2.8 Consensus size: 66
20882 TAAATCATAA
* * * ** * *
20892 ATAACTTAATAATAAATTAATGATAAAGTAGTAGTAAATAATTGATAATTTAGTAGTTAATCATT
1 ATAACTTAATAATAAATTAATGACAAAGTAATAGTAAATAATCGATAACATAATAGTTAATCAAT
*
20957 T
66 G
* * * ** *
20958 AAAACTTAA-AGTTAAATTAGT-ACAACTTAATAGTAAATCATCGATAACATAATAGTTAATCAA
1 ATAACTTAATA-ATAAATTAATGACAAAGTAATAGTAAATAATCGATAACATAATAGTTAATCAA
21021 TG
65 TG
* * * * *
21023 ATAACTTAATAATAAA-TAATTAAAAATTAAGTAGCAAACTAAT-GATAAAATAATAG
1 ATAACTTAATAATAAATTAATGACAAAGTAA-TAGTAAA-TAATCGATAACATAATAG
21079 CAAATATATA
Statistics
Matches: 94, Mismatches: 22, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
64 3 0.03
65 53 0.56
66 35 0.37
67 3 0.03
ACGTcount: A:0.51, C:0.06, G:0.09, T:0.33
Consensus pattern (66 bp):
ATAACTTAATAATAAATTAATGACAAAGTAATAGTAAATAATCGATAACATAATAGTTAATCAAT
G
Found at i:21143 original size:66 final size:65
Alignment explanation
Indices: 21073--21208 Score: 150
Period size: 66 Copynumber: 2.1 Consensus size: 65
21063 AATGATAAAA
* *
21073 TAATAGCAAATATA-TAAAAATATAACAGTAAATCATTGATAATTTAGTAGTAAATTA-TTAATA
1 TAATAGCAAA-ATACTAAAAATATAACAGTAAATCAATGATAATTTAATA-TAAATTAGTTAATA
21136 AT
64 AT
* * * *** *
21138 GTAATAGTAAAATACTAATAATTTAGTTGTAAATCAATGATAATTTAATATAAATTAGTTAATCA
1 -TAATAGCAAAATACTAAAAATATAACAGTAAATCAATGATAATTTAATATAAATTAGTTAATAA
21203 T
65 T
21204 TAATA
1 TAATA
21209 ACTTTATAGT
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
65 15 0.25
66 44 0.75
ACGTcount: A:0.50, C:0.04, G:0.08, T:0.38
Consensus pattern (65 bp):
TAATAGCAAAATACTAAAAATATAACAGTAAATCAATGATAATTTAATATAAATTAGTTAATAAT
Found at i:21718 original size:11 final size:11
Alignment explanation
Indices: 21702--21740 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
21692 AGTTAATTAT
21702 TAATAACTTAA
1 TAATAACTTAA
*
21713 TAATAAATTAA
1 TAATAACTTAA
*
21724 TGATAACTTAA
1 TAATAACTTAA
21735 TAATAA
1 TAATAA
21741 TTAGTTTCAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (11 bp):
TAATAACTTAA
Found at i:21721 original size:22 final size:22
Alignment explanation
Indices: 21647--21829 Score: 115
Period size: 22 Copynumber: 8.4 Consensus size: 22
21637 AATATTATAT
* * **
21647 TAATAAATCAATGATAGGTTAA
1 TAATAAATTATTGATAACTTAA
* * * *
21669 TAAAAAATAAATGATAACTTAG
1 TAATAAATTATTGATAACTTAA
* * *
21691 TAGTTAATTATTAATAACTTAA
1 TAATAAATTATTGATAACTTAA
*
21713 TAATAAATTAATGATAACTTAA
1 TAATAAATTATTGATAACTTAA
* *
21735 TAAT-AATTAGTT--TCAGTT--
1 TAATAAATTA-TTGATAACTTAA
*
21753 TAGTAGCAATATATTGATAACTTAA
1 TAATA--AAT-TATTGATAACTTAA
* * *
21778 TAATAAATTAATAATAATTTAA
1 TAATAAATTATTGATAACTTAA
* *
21800 TAGTAAATTAGTGATAACTTAA
1 TAATAAATTATTGATAACTTAA
21822 TAATAAAT
1 TAATAAAT
21830 CAGTTTCAGT
Statistics
Matches: 121, Mismatches: 31, Indels: 18
0.71 0.18 0.11
Matches are distributed among these distances:
18 3 0.02
20 4 0.03
21 10 0.08
22 93 0.77
23 7 0.06
25 4 0.03
ACGTcount: A:0.50, C:0.04, G:0.08, T:0.38
Consensus pattern (22 bp):
TAATAAATTATTGATAACTTAA
Found at i:21726 original size:44 final size:44
Alignment explanation
Indices: 21665--21988 Score: 137
Period size: 44 Copynumber: 7.3 Consensus size: 44
21655 CAATGATAGG
* * *
21665 TTAATAAAAAATAAATGATAACTTAGTAGTTAATTATTAATAAC
1 TTAATAATAAATTAATGATAACTTAGTAGTTAATCATTAATAAC
* * * * *
21709 TTAATAATAAATTAATGATAACTTAATA-ATAATTAGTT--TCAG
1 TTAATAATAAATTAATGATAACTTAGTAGTTAATCA-TTAATAAC
* * * * * * * *
21751 TT--TAGTAGCAATATATTGATAACTTAATAATAAATTAATAATAAT
1 TTAATAATA--AAT-TAATGATAACTTAGTAGTTAATCATTAATAAC
* * * * * **
21796 TTAATAGTAAATTAGTGATAACTTAATAATAAATCAGTT--TCAGT
1 TTAATAATAAATTAATGATAACTTAGTAGTTAATCA-TTAAT-AAC
* * * * * * *
21840 TTAGTAATAATTTATTGACAAATTTAGTAGTAAATCATAAATAAC
1 TTAATAATAAATTAATGA-TAACTTAGTAGTTAATCATTAATAAC
* * * * *
21885 TTAGTAATAAATCAATGATAATTTAGTAGTTAATAATTGGA-AAC
1 TTAATAATAAATTAATGATAACTTAGTAGTTAATCATT-AATAAC
*
21929 TTAA-AAGTAAATCAAT-ATAACTTAGTAGTAGTTAATCATTAATAAC
1 TTAATAA-TAAATTAATGATAAC-T--TAGTAGTTAATCATTAATAAC
*
21975 TTAATAGTAAATTA
1 TTAATAATAAATTA
21989 TGGATAGTTT
Statistics
Matches: 217, Mismatches: 42, Indels: 40
0.73 0.14 0.13
Matches are distributed among these distances:
40 4 0.02
42 7 0.03
43 29 0.13
44 103 0.47
45 40 0.18
46 28 0.13
47 6 0.03
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.38
Consensus pattern (44 bp):
TTAATAATAAATTAATGATAACTTAGTAGTTAATCATTAATAAC
Found at i:21788 original size:11 final size:11
Alignment explanation
Indices: 21769--21829 Score: 68
Period size: 11 Copynumber: 5.5 Consensus size: 11
21759 CAATATATTG
*
21769 ATAACTTAATA
1 ATAAATTAATA
21780 ATAAATTAATA
1 ATAAATTAATA
*
21791 ATAATTTAATA
1 ATAAATTAATA
* * *
21802 GTAAATTAGTG
1 ATAAATTAATA
*
21813 ATAACTTAATA
1 ATAAATTAATA
21824 ATAAAT
1 ATAAAT
21830 CAGTTTCAGT
Statistics
Matches: 39, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
11 39 1.00
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (11 bp):
ATAAATTAATA
Found at i:22117 original size:22 final size:21
Alignment explanation
Indices: 22065--22117 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 21
22055 TGATGATTTT
22065 ATAGTAAATAATCAAAAATTA
1 ATAGTAAATAATCAAAAATTA
* *
22086 AGTAGCAAATCAAT-GAAAATATA
1 A-TAGTAAAT-AATCAAAAAT-TA
22109 ATAGTAAAT
1 ATAGTAAAT
22118 GCATAAGAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
21 1 0.04
22 19 0.73
23 6 0.23
ACGTcount: A:0.58, C:0.06, G:0.09, T:0.26
Consensus pattern (21 bp):
ATAGTAAATAATCAAAAATTA
Found at i:22173 original size:22 final size:22
Alignment explanation
Indices: 22133--22220 Score: 70
Period size: 22 Copynumber: 4.0 Consensus size: 22
22123 AGAATATATC
22133 ATTGATAATTTAGATGTAAATT
1 ATTGATAATTTAGATGTAAATT
* **
22155 ATTGATTATTTAG-TAGTAAACC
1 ATTGATAATTTAGAT-GTAAATT
* * * *
22177 ACTAATAACTTAGTTGTAAATT
1 ATTGATAATTTAGATGTAAATT
* * *
22199 AATGATAATTTAGGTGCAAATT
1 ATTGATAATTTAGATGTAAATT
22221 TGTTAGTTAT
Statistics
Matches: 50, Mismatches: 14, Indels: 4
0.74 0.21 0.06
Matches are distributed among these distances:
21 1 0.02
22 48 0.96
23 1 0.02
ACGTcount: A:0.40, C:0.06, G:0.14, T:0.41
Consensus pattern (22 bp):
ATTGATAATTTAGATGTAAATT
Found at i:22325 original size:22 final size:22
Alignment explanation
Indices: 22227--22326 Score: 73
Period size: 22 Copynumber: 4.5 Consensus size: 22
22217 AATTTGTTAG
*
22227 TTATTGATAACTTT-GTAGTAAA
1 TTATTCATAA-TTTAGTAGTAAA
*
22249 TTA-TCGATAAATTAAG-AGTAAA
1 TTATTC-AT-AATTTAGTAGTAAA
* * *
22271 TCAGTT-ATAACTTAGTAGCAAA
1 TTA-TTCATAATTTAGTAGTAAA
* *
22293 TCATTAATAATTTAGTAGTAAA
1 TTATTCATAATTTAGTAGTAAA
22315 TTATTCATAATT
1 TTATTCATAATT
22327 CATAACTTAG
Statistics
Matches: 61, Mismatches: 10, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
21 8 0.13
22 49 0.80
23 3 0.05
24 1 0.02
ACGTcount: A:0.42, C:0.07, G:0.11, T:0.40
Consensus pattern (22 bp):
TTATTCATAATTTAGTAGTAAA
Found at i:22894 original size:21 final size:22
Alignment explanation
Indices: 22763--22894 Score: 66
Period size: 21 Copynumber: 6.2 Consensus size: 22
22753 ATTAGTAACT
*
22763 AAAATTACATC-AAGAGGTTATC
1 AAAATTATATCGAAGA-GTTATC
* * * *
22785 AAAATTTTATC-AATAATTACC
1 AAAATTATATCGAAGAGTTATC
* * *
22806 AATATTATAT-TATA-AGTTACC
1 AAAATTATATCGA-AGAGTTATC
* * *
22827 AAACTAATATTGAAG-GTTATC
1 AAAATTATATCGAAGAGTTATC
22848 AAAATTATATCGAAGA-TTA-C
1 AAAATTATATCGAAGAGTTATC
22868 AAAAATGT-TATC-AAGAGTTATC
1 -AAAAT-TATATCGAAGAGTTATC
22890 AAAAT
1 AAAAT
22895 CAAAATTATA
Statistics
Matches: 85, Mismatches: 16, Indels: 19
0.71 0.13 0.16
Matches are distributed among these distances:
20 5 0.06
21 64 0.75
22 16 0.19
ACGTcount: A:0.47, C:0.11, G:0.09, T:0.33
Consensus pattern (22 bp):
AAAATTATATCGAAGAGTTATC
Found at i:34193 original size:13 final size:13
Alignment explanation
Indices: 34175--34199 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34165 CAGGTGAAAT
34175 TTTTTATTTTTTG
1 TTTTTATTTTTTG
34188 TTTTTATTTTTT
1 TTTTTATTTTTT
34200 AATTTTTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTATTTTTTG
Found at i:34842 original size:79 final size:79
Alignment explanation
Indices: 34711--34869 Score: 300
Period size: 79 Copynumber: 2.0 Consensus size: 79
34701 CATATTTAAA
34711 TTTACTATGTTCTTATTGACGTTTGTTTGTAATAAATGAGTTGAGAATCTTTTGTTCTGTTTCTA
1 TTTACTATGTTCTTATTGACGTTTGTTTGTAATAAATGAGTTGAGAATCTTTTGTTCTGTTTCTA
34776 ATTAAGGTCACGGC
66 ATTAAGGTCACGGC
*
34790 TTTACTATGTTCTTATTGAGGTTTGTTTGTAATAAATGAGTTGAGAATCTTTTGTTCTGTTTCTA
1 TTTACTATGTTCTTATTGACGTTTGTTTGTAATAAATGAGTTGAGAATCTTTTGTTCTGTTTCTA
*
34855 ATTAAGGTCATGGC
66 ATTAAGGTCACGGC
34869 T
1 T
34870 ATTTGAATTA
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.23, C:0.10, G:0.19, T:0.48
Consensus pattern (79 bp):
TTTACTATGTTCTTATTGACGTTTGTTTGTAATAAATGAGTTGAGAATCTTTTGTTCTGTTTCTA
ATTAAGGTCACGGC
Found at i:51280 original size:17 final size:17
Alignment explanation
Indices: 51246--51285 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 17
51236 TACAAAATAT
51246 AAAATAAAATAAAAAAA
1 AAAATAAAATAAAAAAA
51263 AAAATAAAA-AACAGAAAA
1 AAAATAAAATAA-A-AAAA
51281 AAAAT
1 AAAAT
51286 CGAGGATGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.10
17 10 0.48
18 9 0.43
ACGTcount: A:0.85, C:0.03, G:0.03, T:0.10
Consensus pattern (17 bp):
AAAATAAAATAAAAAAA
Found at i:55226 original size:19 final size:20
Alignment explanation
Indices: 55182--55238 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
55172 AAGAAAAAAA
* *
55182 TATTTTTTTTATTTTTTTAG
1 TATTTTTTTTATGTTTTGAG
*
55202 TGTTTTTTTTATGTTTTGAG
1 TATTTTTTTTATGTTTTGAG
55222 -ATTTTTTGTT-TGTTTTG
1 TATTTTTT-TTATGTTTTG
55239 TTTTGTTTCG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
19 13 0.41
20 19 0.59
ACGTcount: A:0.11, C:0.00, G:0.14, T:0.75
Consensus pattern (20 bp):
TATTTTTTTTATGTTTTGAG
Found at i:58279 original size:13 final size:13
Alignment explanation
Indices: 58261--58285 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
58251 ACGTAATAAT
58261 TAATATAATATTA
1 TAATATAATATTA
58274 TAATATAATATT
1 TAATATAATATT
58286 TATGATAGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TAATATAATATTA
Found at i:59757 original size:2 final size:2
Alignment explanation
Indices: 59752--59782 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
59742 TAAAAAAATA
59752 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
59783 AAGATAGAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:60550 original size:67 final size:67
Alignment explanation
Indices: 60450--60637 Score: 195
Period size: 67 Copynumber: 2.8 Consensus size: 67
60440 TTTTTTTCAG
* * ** *
60450 CTTTCTTTACCTTTTTGTTTTCTTCAA-TTTAAAAGTAATATTTATCTATTAATTGTGT-TTTCT
1 CTTTCTTGATCTTTTTCATTTCTTCAATTTTAAAAGTAATATTTATCTATTAATTGTGTATCT-T
60513 TAA
65 TAA
* ** *
60516 CTTTCTTGA-CTTTTTCATTTTTTTGGATTTTAAAAGTAATATGTAT-TAATTAATTGTGTATCT
1 CTTTCTTGATCTTTTTCA-TTTCTTCAATTTTAAAAGTAATATTTATCT-ATTAATTGTGTATCT
**
60579 TTGG
64 TTAA
* * *
60583 CTTTCTTTATCTTTTTGATTTCTTCAATTTTAAAAATAATATTTATCTATTAATT
1 CTTTCTTGATCTTTTTCATTTCTTCAATTTTAAAAGTAATATTTATCTATTAATT
60638 ATGATGATTG
Statistics
Matches: 99, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
65 6 0.06
66 15 0.15
67 68 0.69
68 10 0.10
ACGTcount: A:0.26, C:0.10, G:0.07, T:0.57
Consensus pattern (67 bp):
CTTTCTTGATCTTTTTCATTTCTTCAATTTTAAAAGTAATATTTATCTATTAATTGTGTATCTTT
AA
Found at i:63447 original size:12 final size:13
Alignment explanation
Indices: 63432--63525 Score: 50
Period size: 16 Copynumber: 6.6 Consensus size: 13
63422 TTTATGTATT
63432 TTATTATTAT-TA
1 TTATTATTATATA
63444 TTATTATGTATATA
1 TTATTAT-TATATA
* *
63458 TTTATTTATTTTTTA
1 -TTA-TTATTATATA
63473 TTAGATTAGATT-TATA
1 TT--ATT--ATTATATA
63489 TGTATATAGTTATATA
1 T-TAT-TA-TTATATA
63505 TTTATTATTAT-TA
1 -TTATTATTATATA
63518 TTATTATT
1 TTATTATT
63526 TTTTTTTTTT
Statistics
Matches: 66, Mismatches: 3, Indels: 26
0.69 0.03 0.27
Matches are distributed among these distances:
12 15 0.23
13 5 0.08
14 9 0.14
15 15 0.23
16 17 0.26
17 5 0.08
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (13 bp):
TTATTATTATATA
Found at i:69658 original size:1 final size:1
Alignment explanation
Indices: 69654--69697 Score: 70
Period size: 1 Copynumber: 44.0 Consensus size: 1
69644 TTAATTTTTG
* *
69654 AAAAAAAAAAAAAAAAAAAAAAGAGAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
69698 CACCACAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.95, C:0.00, G:0.05, T:0.00
Consensus pattern (1 bp):
A
Found at i:69707 original size:25 final size:25
Alignment explanation
Indices: 69654--69707 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
69644 TTAATTTTTG
* *
69654 AAAAAAAAAAAAAAAAAAAAAAGAG
1 AAAAAAAAAAAAAAAAAAAAAACAC
* *
69679 AAAAAAAAAAAAAAAAAAACACCAC
1 AAAAAAAAAAAAAAAAAAAAAACAC
69704 AAAA
1 AAAA
69708 GGTCTCAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.89, C:0.07, G:0.04, T:0.00
Consensus pattern (25 bp):
AAAAAAAAAAAAAAAAAAAAAACAC
Found at i:70077 original size:15 final size:15
Alignment explanation
Indices: 70055--70094 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
70045 ATCAACAATG
70055 GATG-AAAAAAAAAT
1 GATGAAAAAAAAAAT
70069 GATGAAAAAAAAAAT
1 GATGAAAAAAAAAAT
70084 GA--AAAAAAAAA
1 GATGAAAAAAAAA
70095 TGAAAAAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 9 0.36
14 4 0.16
15 12 0.48
ACGTcount: A:0.78, C:0.00, G:0.12, T:0.10
Consensus pattern (15 bp):
GATGAAAAAAAAAAT
Found at i:70078 original size:12 final size:12
Alignment explanation
Indices: 70056--70132 Score: 85
Period size: 12 Copynumber: 6.8 Consensus size: 12
70046 TCAACAATGG
70056 ATGAAAAAAAAA
1 ATGAAAAAAAAA
70068 TGATGAAAAAAAAA
1 --ATGAAAAAAAAA
70082 ATGAAAAAAAAA
1 ATGAAAAAAAAA
70094 ATG----AAAAA
1 ATGAAAAAAAAA
70102 ATG-AAAAAAAA
1 ATGAAAAAAAAA
*
70113 A-GAAAGAAAAA
1 ATGAAAAAAAAA
70124 ATGAAAAAA
1 ATGAAAAAA
70133 TGAAAAAGAG
Statistics
Matches: 56, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
8 8 0.14
10 1 0.02
11 14 0.25
12 21 0.38
14 12 0.21
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09
Consensus pattern (12 bp):
ATGAAAAAAAAA
Found at i:70090 original size:8 final size:8
Alignment explanation
Indices: 70089--70139 Score: 72
Period size: 8 Copynumber: 6.6 Consensus size: 8
70079 AAAATGAAAA
70089 AAAAAATG
1 AAAAAATG
70097 AAAAAATG
1 AAAAAATG
70105 AAAAAA--
1 AAAAAATG
70111 AAAGAAA-G
1 AAA-AAATG
70119 AAAAAATG
1 AAAAAATG
70127 AAAAAATG
1 AAAAAATG
70135 AAAAA
1 AAAAA
70140 GAGATCCAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
6 3 0.08
7 6 0.15
8 31 0.77
ACGTcount: A:0.80, C:0.00, G:0.12, T:0.08
Consensus pattern (8 bp):
AAAAAATG
Found at i:70109 original size:30 final size:30
Alignment explanation
Indices: 70074--70139 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
70064 AAAATGATGA
70074 AAAAAAAAATGAAAAAAAAAATGAAAAAATG
1 AAAAAAAAA-GAAAAAAAAAATGAAAAAATG
*
70105 AAAAAAAAAGAAAGAAAAAATGAAAAAATG
1 AAAAAAAAAGAAAAAAAAAATGAAAAAATG
70135 AAAAA
1 AAAAA
70140 GAGATCCAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 25 0.74
31 9 0.26
ACGTcount: A:0.82, C:0.00, G:0.11, T:0.08
Consensus pattern (30 bp):
AAAAAAAAAGAAAAAAAAAATGAAAAAATG
Found at i:70140 original size:22 final size:21
Alignment explanation
Indices: 70073--70141 Score: 88
Period size: 22 Copynumber: 3.3 Consensus size: 21
70063 AAAAATGATG
70073 AAAA-AAAAAATGAAAAAA-A
1 AAAAGAAAAAATGAAAAAAGA
* *
70092 AAATGAAAAAATGAAAAAAAA
1 AAAAGAAAAAATGAAAAAAGA
70113 AGAAAGAAAAAATGAAAAAATGA
1 A-AAAGAAAAAATGAAAAAA-GA
70136 AAAAGA
1 AAAAGA
70142 GATCCAAATT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
19 3 0.07
20 14 0.33
21 2 0.05
22 22 0.51
23 2 0.05
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.07
Consensus pattern (21 bp):
AAAAGAAAAAATGAAAAAAGA
Found at i:70187 original size:1 final size:1
Alignment explanation
Indices: 70181--70207 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
70171 TTTGGTACCC
70181 AAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
70208 GATCCAGGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:71451 original size:42 final size:42
Alignment explanation
Indices: 71302--72372 Score: 1685
Period size: 42 Copynumber: 26.0 Consensus size: 42
71292 GTCTAGGAGT
*
71302 ATTTACTTTT-CAAAGTTCGT--TGCCTCTATTTAGAGGAGCA
1 ATTTACTTTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
71342 ATTTACTTTT-CAAAGTTCGT--TGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
*
71382 ATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
*
71423 ATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
*
71465 ATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
*
71507 ATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
71549 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
71591 ATTTACTTTT-CAAAGTTCGT--TGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
71631 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
*
71673 ATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
71715 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
*
71757 ATTTACTTTT-CAAAGTTCGT--TGCCTTTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
*
71797 ATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
71839 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
*
71881 ATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
71923 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
*
71965 ATTTACTTTT-CAAAGTTCGT--TGCCTTTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
*
72005 ATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
72047 ATTTACTTTT-CAAAGTTCGT--TGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
72087 ATTTACTTTT-CAAAGTTCGT--TGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
*
72127 ATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
* *
72168 ATTTATTTTTCCAAAGTCGAGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
*
72210 ATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
* *
72251 ATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
72293 ATTTAC-TTTCCAAAGTCCGT--TGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCCAAAGT-CGTGGTGCCTCTGTTTAGAGGAGCA
* * * *
72333 ATTTAC-TTTCAAAAGTCGTTGAGTCTCTGTTTAGAGGAGC
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
72373 TTCGGCCAAA
Statistics
Matches: 976, Mismatches: 32, Indels: 45
0.93 0.03 0.04
Matches are distributed among these distances:
39 11 0.01
40 263 0.27
41 153 0.16
42 549 0.56
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (42 bp):
ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
Found at i:71649 original size:166 final size:166
Alignment explanation
Indices: 71302--72372 Score: 1700
Period size: 166 Copynumber: 6.5 Consensus size: 166
71292 GTCTAGGAGT
*
71302 ATTTACTTTT-CAAAGTTCGT--TGCCTCTATTTAGAGGAGCAATTTACTTTTC-AAAGTTCGT-
1 ATTTACTTTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAG-TCGTG
*
71362 -TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATT
64 GTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATT
*
71426 TATTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
129 TACTTTTCCAAAGTCGT-GTGCCTCTGTTTAGAGGAGCA
*
71465 ATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGGT
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGGT
71530 GCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTT
66 GCCTCTGTTTAGAGGAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTT
71595 ACTTTT-CAAAGTTCGT-TGCCTCTGTTTAGAGGAGCA
130 ACTTTTCCAAAG-TCGTGTGCCTCTGTTTAGAGGAGCA
71631 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGGT
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGGT
71696 GCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTT
66 GCCTCTGTTTAGAGGAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTT
*
71761 ACTTTT-CAAAGTTCGT-TGCCTTTGTTTAGAGGAGCA
130 ACTTTTCCAAAG-TCGTGTGCCTCTGTTTAGAGGAGCA
* *
71797 ATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGT
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGGT
71862 GCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTT
66 GCCTCTGTTTAGAGGAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTT
71927 ACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
130 ACTTTTCCAAAGTCGT-GTGCCTCTGTTTAGAGGAGCA
*
71965 ATTTACTTTT-CAAAGTTCGT--TGCCTTTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGG
1 ATTTACTTTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGG
72027 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGT--TGCCTCTGTTTAGAGGAGCAATT
65 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCAATT
72090 TACTTTT-CAAAGTTCGT-TGCCTCTGTTTAGAGGAGCA
129 TACTTTTCCAAAG-TCGTGTGCCTCTGTTTAGAGGAGCA
* * * *
72127 ATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTTATTTTTCCAAAGTCGAGGT
1 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGGT
*
72191 GCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTTA
66 GCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA
* *
72256 TTTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
131 CTTTTCCAAAGTCGT-GTGCCTCTGTTTAGAGGAGCA
*
72293 ATTTAC-TTTCCAAAGTCCGT--TGCCTCTGTTTAGAGGAGCAATTTAC-TTTCAAAAGTCGTTG
1 ATTTACTTTTCCAAAGT-CGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGG
* *
72354 AGTCTCTGTTTAGAGGAGC
65 TGCCTCTGTTTAGAGGAGC
72373 TTCGGCCAAA
Statistics
Matches: 857, Mismatches: 27, Indels: 47
0.92 0.03 0.05
Matches are distributed among these distances:
161 4 0.00
162 39 0.05
163 91 0.11
164 99 0.12
165 71 0.08
166 430 0.50
167 47 0.05
168 76 0.09
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (166 bp):
ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGGT
GCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA
CTTTTCCAAAGTCGTGTGCCTCTGTTTAGAGGAGCA
Found at i:71679 original size:208 final size:205
Alignment explanation
Indices: 71302--72372 Score: 1713
Period size: 208 Copynumber: 5.2 Consensus size: 205
71292 GTCTAGGAGT
*
71302 ATTTACTTTTCAAAGTTCGT--TGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGC
1 ATTTACTTTTCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGC
* *
71365 CTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTTATT
65 CTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGT-GTGCCTCTGTTTAGAGGAGCAATTTACT
71430 TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTG
129 TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTG
71495 TTTAGAGGAGCA
194 TTTAGAGGAGCA
71507 ATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAG-TCGTGG
1 ATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTT-CAAAGTTCGT--
71571 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGT-TGCCTCTGTTTAGAGGAGCAATTT
62 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAG-TCGTGTGCCTCTGTTTAGAGGAGCAATTT
71635 ACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCT
126 ACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCT
71700 CTGTTTAGAGGAGCA
191 CTGTTTAGAGGAGCA
71715 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGC
1 ATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGC
*
71780 CTTTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAC
65 CTCTGTTTAGAGGAGCAATTTACTTTTC-AAAGTCGT-GTGCCTCTGTTTAGAGGAGCAATTTAC
71845 TTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCT
128 TTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCT
71910 GTTTAGAGGAGCA
193 GTTTAGAGGAGCA
71923 ATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGC
1 ATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGC
*
71988 CTTTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAC
65 CTCTGTTTAGAGGAGCAATTTACTTTTC-AAAGTCGT-GTGCCTCTGTTTAGAGGAGCAATTTAC
72053 TTTT-CAAAGTTCGT--TGCCTCTGTTTAGAGGAGCAATTTACTTTTC-AAAGTTCGT--TGCCT
128 TTTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAG-TCGTGGTGCCT
72112 CTGTTTAGAGGAGCA
191 CTGTTTAGAGGAGCA
* * *
72127 ATTTACTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTTATTTTTCCAAAG-TCGAGGT
1 ATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTT-CAAAGTTC--GTT
*
72191 GCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTTA
63 GCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGT-GTGCCTCTGTTTAGAGGAGCAATTTA
* * *
72256 TTTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTTAC-TTTCCAAAGTCCGT--TGCCT
127 CTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGT-CGTGGTGCCT
72318 CTGTTTAGAGGAGCA
191 CTGTTTAGAGGAGCA
* * *
72333 ATTTAC-TTTCAAAAGTCGTTGAGTCTCTGTTTAGAGGAGC
1 ATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAGGAGC
72373 TTCGGCCAAA
Statistics
Matches: 828, Mismatches: 15, Indels: 45
0.93 0.02 0.05
Matches are distributed among these distances:
203 41 0.05
204 77 0.09
205 64 0.08
206 156 0.19
207 47 0.06
208 403 0.49
209 36 0.04
210 4 0.00
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (205 bp):
ATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCC
TCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGTGCCTCTGTTTAGAGGAGCAATTTACTTT
TCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTT
TAGAGGAGCA
Found at i:72400 original size:15 final size:15
Alignment explanation
Indices: 72379--72471 Score: 96
Period size: 16 Copynumber: 5.8 Consensus size: 15
72369 GAGCTTCGGC
72379 CAAAAAAAAAACAAAA
1 CAAAAAAAAAA-AAAA
*
72395 AAAAAAAAAACAAAAA
1 CAAAAAAAAA-AAAAA
*
72411 CAAAAAACAAAAAAAT
1 CAAAAAA-AAAAAAAA
72427 CAAAAAAATCAAAAAAA
1 CAAAAAAA--AAAAAAA
*
72444 TCAAAAAAAAAAAAAT
1 -CAAAAAAAAAAAAAA
*
72460 CAAAAATAAAAA
1 CAAAAAAAAAAA
72472 TGTTGAGTTG
Statistics
Matches: 66, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
15 12 0.18
16 36 0.55
17 10 0.15
18 8 0.12
ACGTcount: A:0.85, C:0.10, G:0.00, T:0.05
Consensus pattern (15 bp):
CAAAAAAAAAAAAAA
Found at i:72464 original size:9 final size:8
Alignment explanation
Indices: 72383--72465 Score: 95
Period size: 9 Copynumber: 10.6 Consensus size: 8
72373 TTCGGCCAAA
72383 AAAAAAAC
1 AAAAAAAC
72391 AAAAAAA-
1 AAAAAAAC
72398 AAAAAAAC
1 AAAAAAAC
72406 --AAAAAC
1 AAAAAAAC
72412 -AAAAAAC
1 AAAAAAAC
72419 AAAAAAATC
1 AAAAAAA-C
72428 AAAAAAATC
1 AAAAAAA-C
72437 AAAAAAATC
1 AAAAAAA-C
72446 AAAAAAA-
1 AAAAAAAC
*
72453 AAAAAATC
1 AAAAAAAC
72461 AAAAA
1 AAAAA
72466 TAAAAATGTT
Statistics
Matches: 69, Mismatches: 1, Indels: 10
0.86 0.01 0.12
Matches are distributed among these distances:
6 6 0.09
7 19 0.28
8 18 0.26
9 26 0.38
ACGTcount: A:0.86, C:0.10, G:0.00, T:0.05
Consensus pattern (8 bp):
AAAAAAAC
Found at i:72471 original size:1 final size:1
Alignment explanation
Indices: 72380--72458 Score: 68
Period size: 1 Copynumber: 79.0 Consensus size: 1
72370 AGCTTCGGCC
* * * * ** ** *
72380 AAAAAAAAAACAAAAAAAAAAAAAACAAAAACAAAAAACAAAAAAATCAAAAAAATCAAAAAAAT
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
72445 CAAAAAAAAAAAAA
1 AAAAAAAAAAAAAA
72459 TCAAAAATAA
Statistics
Matches: 61, Mismatches: 17, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 61 1.00
ACGTcount: A:0.87, C:0.09, G:0.00, T:0.04
Consensus pattern (1 bp):
A
Found at i:72472 original size:13 final size:13
Alignment explanation
Indices: 72379--72472 Score: 61
Period size: 13 Copynumber: 7.0 Consensus size: 13
72369 GAGCTTCGGC
72379 CAAAAAAAAAACA-
1 CAAAAAAAAAA-AT
* *
72392 AAAAAAAAAAAAA
1 CAAAAAAAAAAAT
72405 CAAAAACAAAAAA-
1 CAAAAA-AAAAAAT
72418 CAAAAAAATCAAAA-
1 CAAAAAAA--AAAAT
*
72432 -AAATCAAAAAAAT
1 CAAA-AAAAAAAAT
72445 CAAAAAAAAAAAAAT
1 C--AAAAAAAAAAAT
*
72460 CAAAAATAAAAAT
1 CAAAAAAAAAAAT
72473 GTTGAGTTGA
Statistics
Matches: 67, Mismatches: 5, Indels: 18
0.74 0.06 0.20
Matches are distributed among these distances:
12 7 0.10
13 35 0.52
14 13 0.19
15 9 0.13
16 3 0.04
ACGTcount: A:0.84, C:0.10, G:0.00, T:0.06
Consensus pattern (13 bp):
CAAAAAAAAAAAT
Found at i:72672 original size:6 final size:6
Alignment explanation
Indices: 72648--72760 Score: 51
Period size: 6 Copynumber: 18.2 Consensus size: 6
72638 TCTTCTTTTG
72648 TATT-T TATGTAT T-TTAT TATTAT TATTAT TATGTAT ATATTTATT TATT-T
1 TATTAT TAT-TAT TATTAT TATTAT TATTAT TAT-TAT -TA-TTA-T TATTAT
* *
72698 T-TTAT TA-GAT TA-GAT T-TATAT GTATATAGT TATATATT TATTAT
1 TATTAT TATTAT TATTAT TAT-TAT -TAT-TA-T TAT-TA-T TATTAT
*
72742 TATTAT TATTAT TTTTAT T
1 TATTAT TATTAT TATTAT T
72761 TTTTTTTTTG
Statistics
Matches: 90, Mismatches: 4, Indels: 27
0.74 0.03 0.22
Matches are distributed among these distances:
4 2 0.02
5 19 0.21
6 36 0.40
7 10 0.11
8 20 0.22
9 3 0.03
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (6 bp):
TATTAT
Found at i:76069 original size:23 final size:23
Alignment explanation
Indices: 76043--76096 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 23
76033 TTATTATTAT
*
76043 TAATAACAATTAAATATTTAT-CA
1 TAATAA-AATTAAACATTTATGCA
*
76066 TAATAAATTTAAACATTTATGCA
1 TAATAAAATTAAACATTTATGCA
76089 TAA-AAAAT
1 TAATAAAAT
76097 ACTTAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 16 0.59
23 11 0.41
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.37
Consensus pattern (23 bp):
TAATAAAATTAAACATTTATGCA
Found at i:76083 original size:22 final size:23
Alignment explanation
Indices: 76043--76096 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
76033 TTATTATTAT
* *
76043 TAATAACAATTAAATATTTAT-CA
1 TAATAA-ATTTAAACATTTATGCA
76066 TAATAAATTTAAACATTTATGCA
1 TAATAAATTTAAACATTTATGCA
*
76089 TAAAAAAT
1 TAATAAAT
76097 ACTTAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 12 0.44
23 15 0.56
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.37
Consensus pattern (23 bp):
TAATAAATTTAAACATTTATGCA
Found at i:77138 original size:16 final size:16
Alignment explanation
Indices: 77113--77149 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
77103 GCTGTTCTTC
77113 TTTTTTTTGTATT-TT
1 TTTTTTTTGTATTATT
77128 TTTTGTTTTGTATTATT
1 TTTT-TTTTGTATTATT
77145 TTTTT
1 TTTTT
77150 GGTATTTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 4 0.20
16 10 0.50
17 6 0.30
ACGTcount: A:0.08, C:0.00, G:0.08, T:0.84
Consensus pattern (16 bp):
TTTTTTTTGTATTATT
Found at i:77146 original size:28 final size:28
Alignment explanation
Indices: 77113--77169 Score: 78
Period size: 30 Copynumber: 2.0 Consensus size: 28
77103 GCTGTTCTTC
* *
77113 TTTTTTTTGTATTTTTTTTGTTTTGTATTA
1 TTTTTTTGGTA-TTTATTT-TTTTGTATTA
77143 TTTTTTTGGTATTTATTTTTTTGTATT
1 TTTTTTTGGTATTTATTTTTTTGTATT
77170 TCGTATAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 9 0.36
29 6 0.24
30 10 0.40
ACGTcount: A:0.11, C:0.00, G:0.11, T:0.79
Consensus pattern (28 bp):
TTTTTTTGGTATTTATTTTTTTGTATTA
Found at i:77162 original size:16 final size:15
Alignment explanation
Indices: 77113--77170 Score: 75
Period size: 14 Copynumber: 3.9 Consensus size: 15
77103 GCTGTTCTTC
*
77113 TTTTTTTTGTATTTT
1 TTTTTTTTGTATTTA
77128 TTTTGTTTTGTA-TTA
1 TTTT-TTTTGTATTTA
*
77143 TTTTTTTGGTATTTA
1 TTTTTTTTGTATTTA
77158 -TTTTTTTGTATTT
1 TTTTTTTTGTATTT
77171 CGTATAATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
14 18 0.47
15 13 0.34
16 7 0.18
ACGTcount: A:0.10, C:0.00, G:0.10, T:0.79
Consensus pattern (15 bp):
TTTTTTTTGTATTTA
Found at i:82449 original size:42 final size:42
Alignment explanation
Indices: 82403--82483 Score: 153
Period size: 42 Copynumber: 1.9 Consensus size: 42
82393 TTGTGGATTT
82403 AAACTTTATGATGTGAATTTGATCATTTAATGAATAATAAAC
1 AAACTTTATGATGTGAATTTGATCATTTAATGAATAATAAAC
*
82445 AAACTTTATGATGTGGATTTGATCATTTAATGAATAATA
1 AAACTTTATGATGTGAATTTGATCATTTAATGAATAATA
82484 GATAAATAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.41, C:0.06, G:0.14, T:0.40
Consensus pattern (42 bp):
AAACTTTATGATGTGAATTTGATCATTTAATGAATAATAAAC
Found at i:90068 original size:12 final size:12
Alignment explanation
Indices: 90051--90115 Score: 50
Period size: 12 Copynumber: 5.6 Consensus size: 12
90041 ATTAAAATTT
90051 ATTTATTTATTA
1 ATTTATTTATTA
90063 ATTTA-TTATATA
1 ATTTATTTAT-TA
*
90075 A-TAATTTATT-
1 ATTTATTTATTA
90085 ATTTA-TTAGTCT-
1 ATTTATTTA-T-TA
90097 ATTTATTTATTA
1 ATTTATTTATTA
*
90109 GTTTATT
1 ATTTATT
90116 ATAGTAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 14
0.72 0.05 0.23
Matches are distributed among these distances:
10 4 0.09
11 11 0.26
12 25 0.58
13 3 0.07
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (12 bp):
ATTTATTTATTA
Found at i:90084 original size:23 final size:23
Alignment explanation
Indices: 90055--90130 Score: 84
Period size: 23 Copynumber: 3.3 Consensus size: 23
90045 AAATTTATTT
90055 ATTTATTAATTTATTATATAATA
1 ATTTATTAATTTATTATATAATA
* * *
90078 ATTTATT-ATTTATTAGTCTATTT
1 ATTTATTAATTTATTA-TATAATA
*
90101 ATTTATTAGTTTATTATAGTAA-A
1 ATTTATTAATTTATTATA-TAATA
90124 ATTTATT
1 ATTTATT
90131 TGTTATATTA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
22 8 0.19
23 26 0.60
24 9 0.21
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.59
Consensus pattern (23 bp):
ATTTATTAATTTATTATATAATA
Found at i:90099 original size:15 final size:15
Alignment explanation
Indices: 90046--90117 Score: 81
Period size: 15 Copynumber: 4.7 Consensus size: 15
90036 ATAATATTAA
90046 AATTTATTTATTTATT
1 AATTTA-TTATTTATT
* *
90062 AATTTATTATATAAT
1 AATTTATTATTTATT
90077 AATTTATTATTTATT
1 AATTTATTATTTATT
* *
90092 AGTCTATTTATTTATT
1 AATTTA-TTATTTATT
*
90108 AGTTTATTAT
1 AATTTATTAT
90118 AGTAAAATTT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
15 28 0.58
16 20 0.42
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.62
Consensus pattern (15 bp):
AATTTATTATTTATT
Found at i:90113 original size:8 final size:7
Alignment explanation
Indices: 90047--90117 Score: 61
Period size: 8 Copynumber: 9.3 Consensus size: 7
90037 TAATATTAAA
90047 ATTTATTT
1 ATTTA-TT
90055 ATTTATT
1 ATTTATT
90062 AATTTATT
1 -ATTTATT
* *
90070 ATATAATA
1 AT-TTATT
90078 ATTTATT
1 ATTTATT
90085 ATTTATT
1 ATTTATT
*
90092 AGTCTATTT
1 A-TTTA-TT
90101 ATTTATT
1 ATTTATT
90108 AGTTTATT
1 A-TTTATT
90116 AT
1 AT
90118 AGTAAAATTT
Statistics
Matches: 52, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
7 19 0.37
8 30 0.58
9 3 0.06
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.63
Consensus pattern (7 bp):
ATTTATT
Found at i:90147 original size:24 final size:23
Alignment explanation
Indices: 90101--90147 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
90091 TAGTCTATTT
*
90101 ATTTATTAGTTTATTATAGTAAA
1 ATTTATTAGTTTATTAAAGTAAA
* *
90124 ATTTATTTGTTATATTAAATTAAA
1 ATTTATTAGTT-TATTAAAGTAAA
90148 TAATAACAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.53
Consensus pattern (23 bp):
ATTTATTAGTTTATTAAAGTAAA
Found at i:94959 original size:18 final size:18
Alignment explanation
Indices: 94936--94970 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
94926 GATTTTAAAC
94936 TTTGATTTGTGATGAACG
1 TTTGATTTGTGATGAACG
94954 TTTGATTTGTGATGAAC
1 TTTGATTTGTGATGAAC
94971 TAGAGCCAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.06, G:0.26, T:0.46
Consensus pattern (18 bp):
TTTGATTTGTGATGAACG
Found at i:101593 original size:89 final size:91
Alignment explanation
Indices: 101496--101689 Score: 299
Period size: 89 Copynumber: 2.1 Consensus size: 91
101486 ATATAATTTA
101496 ATAT-ATATATATACGTAAATTACAAATAATATAATTAAAATATCAAAACATAATAAAATAAAAA
1 ATATAATATATATACGTAAATTACAAATAATATAATTAAAATAT-AAAACATAATAAAATAAAAA
101560 A-TTT-TT-AAATTCAAAATTCAAAAC
65 ATTTTATTAAAATTCAAAATTCAAAAC
* *
101584 ATATAATATATATATGTAAATTACAAATAATATAATTAAAATATTAAACATAATAAAATAAAAAA
1 ATATAATATATATACGTAAATTACAAATAATATAATTAAAATATAAAACATAATAAAATAAAAAA
101649 TTTTAATTCAAAAATTCAAAATTCAAAAC
66 TTTT-ATT--AAAATTCAAAATTCAAAAC
101678 ATATAATA-ATAT
1 ATATAATATATAT
101690 TTGAGAAAAA
Statistics
Matches: 97, Mismatches: 2, Indels: 9
0.90 0.02 0.08
Matches are distributed among these distances:
88 24 0.25
89 41 0.42
91 2 0.02
93 4 0.04
94 26 0.27
ACGTcount: A:0.59, C:0.07, G:0.01, T:0.33
Consensus pattern (91 bp):
ATATAATATATATACGTAAATTACAAATAATATAATTAAAATATAAAACATAATAAAATAAAAAA
TTTTATTAAAATTCAAAATTCAAAAC
Found at i:102120 original size:20 final size:19
Alignment explanation
Indices: 102074--102121 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
102064 AAATAAAATA
*
102074 ATTTTAAATTTTAAGTAAT
1 ATTTTAAATTTTAAATAAT
*
102093 AGTATTAAATTTTAAATAATT
1 A-TTTTAAATTTTAAATAA-T
102114 ATTTTAAA
1 ATTTTAAA
102122 AATTTGTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 1 0.04
20 21 0.88
21 2 0.08
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (19 bp):
ATTTTAAATTTTAAATAAT
Found at i:104919 original size:11 final size:11
Alignment explanation
Indices: 104903--104939 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
104893 AATTTTAACC
104903 CATATTATTTT
1 CATATTATTTT
104914 CATATTATTTT
1 CATATTATTTT
*
104925 -TTATTATTTT
1 CATATTATTTT
104935 CATAT
1 CATAT
104940 CATATCATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (11 bp):
CATATTATTTT
Done.