Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168488.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_86, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102991
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.40
Warning! 1000 characters in sequence are not A, C, G, or T
File 2 of 2
Found at i:86027 original size:21 final size:18
Alignment explanation
Indices: 85985--86032 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 18
85975 ATAAATTTTA
85985 ATTTAATTT-TTTAAATT
1 ATTTAATTTATTTAAATT
86002 ATTTAATTTATCTTAAATAAT
1 ATTTAATTTAT-TTAAAT--T
86023 ATTTAATTTA
1 ATTTAATTTA
86033 AGATAGAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 9 0.33
18 1 0.04
19 6 0.22
21 11 0.41
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (18 bp):
ATTTAATTTATTTAAATT
Found at i:86348 original size:14 final size:13
Alignment explanation
Indices: 86309--86350 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
86299 TAATATTATT
86309 TAAATAAATAATA
1 TAAATAAATAATA
**
86322 T-TCTAAATAATA
1 TAAATAAATAATA
86334 TAAATAAATTAATA
1 TAAATAAA-TAATA
86348 TAA
1 TAA
86351 TCATAATAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
12 10 0.43
13 5 0.22
14 8 0.35
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (13 bp):
TAAATAAATAATA
Found at i:86856 original size:13 final size:14
Alignment explanation
Indices: 86838--86872 Score: 54
Period size: 13 Copynumber: 2.5 Consensus size: 14
86828 TAGTTTATAA
86838 ATTATTAA-AAATT
1 ATTATTAACAAATT
86851 ATTATTAACAAATT
1 ATTATTAACAAATT
86865 ATTTATTA
1 A-TTATTA
86873 GTATTATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 8 0.40
14 6 0.30
15 6 0.30
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (14 bp):
ATTATTAACAAATT
Found at i:87928 original size:13 final size:13
Alignment explanation
Indices: 87912--87936 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
87902 AATACAAATA
87912 AATCTAATTATTT
1 AATCTAATTATTT
87925 AATCTAATTATT
1 AATCTAATTATT
87937 AATAAAGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (13 bp):
AATCTAATTATTT
Found at i:87992 original size:21 final size:22
Alignment explanation
Indices: 87962--88016 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
87952 AGTTTATTAT
87962 ATAAACTATTGTTAT-AAGTATA
1 ATAAACTATTGTTATGAA-TATA
*
87984 ATAAA-TATTG-CATGAATATA
1 ATAAACTATTGTTATGAATATA
*
88004 ATAAATTATTGTT
1 ATAAACTATTGTT
88017 TATTACAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
20 11 0.39
21 12 0.43
22 5 0.18
ACGTcount: A:0.45, C:0.04, G:0.09, T:0.42
Consensus pattern (22 bp):
ATAAACTATTGTTATGAATATA
Found at i:88402 original size:21 final size:21
Alignment explanation
Indices: 88352--88423 Score: 53
Period size: 21 Copynumber: 3.4 Consensus size: 21
88342 AGGTTGAGGA
88352 AAATTATATTATTAT-AA-TAT
1 AAATTA-ATTATTATAAATTAT
*
88372 AGTATATAATTATTATAAATTAT
1 A-AAT-TAATTATTATAAATTAT
*
88395 AAATTAA-TA-TATAATTTATT
1 AAATTAATTATTATAAATTA-T
88415 AATATTAAT
1 AA-ATTAAT
88424 AAATTATTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
19 8 0.19
20 6 0.14
21 18 0.43
22 6 0.14
23 4 0.10
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (21 bp):
AAATTAATTATTATAAATTAT
Found at i:88413 original size:19 final size:21
Alignment explanation
Indices: 88385--88424 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
88375 ATATAATTAT
88385 TATAAATTA-TAA-ATTAATA
1 TATAAATTATTAATATTAATA
*
88404 TATAATTTATTAATATTAATA
1 TATAAATTATTAATATTAATA
88425 AATTATTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 3 0.17
21 7 0.39
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
TATAAATTATTAATATTAATA
Found at i:88421 original size:28 final size:28
Alignment explanation
Indices: 88354--88429 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 28
88344 GTTGAGGAAA
*
88354 ATTATATTATTAT-AATATAGTATATAATT
1 ATTATA-TATTATAAAT-TAATATATAATT
*
88383 ATTATAAATTATAAATTAATATATAATTT
1 ATTATATATTATAAATTAATATATAA-TT
88412 ATTA-ATATTAATAAATTA
1 ATTATATATT-ATAAATTA
88430 TTAACATTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
28 18 0.44
29 23 0.56
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (28 bp):
ATTATATATTATAAATTAATATATAATT
Found at i:88430 original size:17 final size:17
Alignment explanation
Indices: 88382--88439 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
88372 AGTATATAAT
*
88382 TATT-ATAAATTATAAA
1 TATTAATAAATTATTAA
* *
88398 TTAATATATAATTTATTAA
1 -TATTA-ATAAATTATTAA
88417 TATTAATAAATTATTAA
1 TATTAATAAATTATTAA
*
88434 CATTAA
1 TATTAA
88440 ATAACTATAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
17 19 0.58
18 4 0.12
19 10 0.30
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (17 bp):
TATTAATAAATTATTAA
Found at i:88458 original size:36 final size:36
Alignment explanation
Indices: 88364--88458 Score: 88
Period size: 36 Copynumber: 2.5 Consensus size: 36
88354 ATTATATTAT
88364 TATAATATAGTATATAATTATTATAAATTATAAATTAATA
1 TATAATATA-T-TATAATTA--ATAAATTATAAATTAATA
*
88404 TATAATTTATTA-ATATTAATAAATTATTAACATTAA-A
1 TATAATATATTATA-ATTAATAAATTA-TAA-ATTAATA
*
88441 TA-ACTATATTATAATTAA
1 TATAATATATTATAATTAA
88459 GTTATGTTAT
Statistics
Matches: 48, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
36 20 0.42
37 8 0.17
38 11 0.23
39 1 0.02
40 8 0.17
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.45
Consensus pattern (36 bp):
TATAATATATTATAATTAATAAATTATAAATTAATA
Found at i:88523 original size:20 final size:19
Alignment explanation
Indices: 88491--88529 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
88481 CAATACCTAC
88491 TTCAAGTTATTATATATTTA
1 TTCAAGTTATTATA-ATTTA
88511 TTCAA-TTATTTATAATTTA
1 TTCAAGTTA-TTATAATTTA
88530 ATATTGTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.56
Consensus pattern (19 bp):
TTCAAGTTATTATAATTTA
Found at i:88528 original size:19 final size:20
Alignment explanation
Indices: 88491--88529 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
88481 CAATACCTAC
88491 TTCAAGTTATTATATATTTA
1 TTCAAGTTATTATATATTTA
88511 TTCAA-TTATT-TATAATTTA
1 TTCAAGTTATTATAT-ATTTA
88530 ATATTGTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 3 0.17
19 10 0.56
20 5 0.28
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.56
Consensus pattern (20 bp):
TTCAAGTTATTATATATTTA
Found at i:88601 original size:5 final size:5
Alignment explanation
Indices: 88591--88616 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
88581 ATATTGCTTG
88591 TTATA TTATA TTATA TTATA TTATA T
1 TTATA TTATA TTATA TTATA TTATA T
88617 AATGAAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TTATA
Found at i:90671 original size:46 final size:46
Alignment explanation
Indices: 90584--90674 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
90574 GCTTTTGTAC
* * ***
90584 AAGAAAAATTGATACTTTCAACTTTTCCTTAAAATTTTTTTTTTTT
1 AAGAAAAATTGATACTTCCAACTTTTCCTCAAAAACATTTTTTTTT
*
90630 AAGAAAAATTGGTACTTCCAACTTTTCCTCAAAAACATTTTTTTT
1 AAGAAAAATTGATACTTCCAACTTTTCCTCAAAAACATTTTTTTT
90675 AAAATTTATT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.14, G:0.05, T:0.46
Consensus pattern (46 bp):
AAGAAAAATTGATACTTCCAACTTTTCCTCAAAAACATTTTTTTTT
Found at i:90697 original size:58 final size:58
Alignment explanation
Indices: 90625--90868 Score: 316
Period size: 58 Copynumber: 4.2 Consensus size: 58
90615 AAATTTTTTT
* * * *
90625 TTTTTAAGAAAAATTGGTACTTCCAACTTTTCCTCAAAAACATTTTTTTTAAAATTTA
1 TTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTAAAATTTA
* *
90683 TTTTTAAGGAAAATTGATACTTTCAACTTTTCTTCAAAAATA-TTTTTTAAAAATTTTA
1 TTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTAAAA-TTTA
* * * * **
90741 TTTTCAAGGAAAATTGATACTTTTACCTTTTTCTCAAAAATATTTTTTAGAAAA-TTA
1 TTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTAAAATTTA
* *
90798 TTTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTAGAATTT-
1 TTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTAAAATTTA
90855 TATTTTAA-GAAAAT
1 T-TTTTAAGGAAAAT
90869 CATTAAAAAA
Statistics
Matches: 162, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
57 68 0.42
58 85 0.52
59 9 0.06
ACGTcount: A:0.37, C:0.11, G:0.06, T:0.46
Consensus pattern (58 bp):
TTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTAAAATTTA
Found at i:90894 original size:19 final size:18
Alignment explanation
Indices: 90870--90905 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
90860 TAAGAAAATC
90870 ATTAAAAAAATAAAATAAG
1 ATTAAAAAAA-AAAATAAG
*
90889 ATTAAAAATAAAAATAA
1 ATTAAAAAAAAAAATAA
90906 AATAAGGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (18 bp):
ATTAAAAAAAAAAATAAG
Found at i:91065 original size:29 final size:29
Alignment explanation
Indices: 91018--91089 Score: 135
Period size: 29 Copynumber: 2.4 Consensus size: 29
91008 ACTCCAGGAA
91018 GAAAGACGGCTCGGATGTGCGGCTCGACAG
1 GAAA-ACGGCTCGGATGTGCGGCTCGACAG
91048 GAAAACGGCTCGGATGTGCGGCTCGACAG
1 GAAAACGGCTCGGATGTGCGGCTCGACAG
91077 GAAAACGGCTCGG
1 GAAAACGGCTCGG
91090 CTGGAACCTA
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
29 38 0.90
30 4 0.10
ACGTcount: A:0.25, C:0.24, G:0.39, T:0.12
Consensus pattern (29 bp):
GAAAACGGCTCGGATGTGCGGCTCGACAG
Found at i:91804 original size:27 final size:28
Alignment explanation
Indices: 91755--91874 Score: 96
Period size: 27 Copynumber: 4.5 Consensus size: 28
91745 AAAAAAAAAG
*
91755 TAAAT-ATAAAAAATATACATTAATAGA
1 TAAATAATAAAAAATATATATTAATAGA
* *
91782 TAAATAATAAAAAATA-ATGTTAATGGA
1 TAAATAATAAAAAATATATATTAATAGA
**
91809 TAACCAAT-AAAAATATATATT-ATCAGA
1 TAAATAATAAAAAATATATATTAAT-AGA
91836 TAAAAATAATATAAAAATA-ATA--AATA-A
1 T--AAATAATA-AAAAATATATATTAATAGA
91863 TAAA-AATAAAAA
1 TAAATAATAAAAA
91875 TGGGCCATCT
Statistics
Matches: 76, Mismatches: 9, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
23 4 0.05
24 4 0.05
25 3 0.04
26 9 0.12
27 28 0.37
28 11 0.14
29 7 0.09
30 3 0.04
31 7 0.09
ACGTcount: A:0.65, C:0.03, G:0.04, T:0.28
Consensus pattern (28 bp):
TAAATAATAAAAAATATATATTAATAGA
Found at i:91862 original size:18 final size:16
Alignment explanation
Indices: 91835--91875 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 16
91825 ATATTATCAG
91835 ATAAAAATAATATAAAA
1 ATAAAAATAATA-AAAA
91852 ATAATAAATAAT-AAAA
1 ATAA-AAATAATAAAAA
91868 ATAAAAAT
1 ATAAAAAT
91876 GGGCCATCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 4 0.17
16 8 0.35
17 4 0.17
18 7 0.30
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (16 bp):
ATAAAAATAATAAAAA
Found at i:92121 original size:43 final size:43
Alignment explanation
Indices: 92063--92567 Score: 506
Period size: 43 Copynumber: 11.6 Consensus size: 43
92053 AAATTTTGAT
* * *
92063 TAAAGCTCCCCTAAACAGAGGCTCAACGACTTTGAAAAATAAA
1 TAAAGCTTCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAA
* * * * *
92106 TAAAACTTCTCTAAACAAAGGCTCAATGACTTTAAAAAATAAA
1 TAAAGCTTCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAA
* *
92149 CAAAGC-TCATCTAATCAGAGGCTCAATGAC-TTGAAAGAAAATAAA
1 TAAAGCTTC-TCTAATCAGAGGCTCAACGACTTTG--A-AAAATAAA
*
92194 TGAAGC-TCTTCTAATCAGAGGCTCAACGACTTTGAAAAATAAA
1 TAAAGCTTC-TCTAATCAGAGGCTCAACGACTTTGAAAAATAAA
* * * * *
92237 CAAAGCTCCTCTAATCAAAGGCTCAATGAC-TAGAAAGAAAATAAA
1 TAAAGCTTCTCTAATCAGAGGCTCAACGACTTTG--A-AAAATAAA
* * * * *
92282 CAAAGCTCCTCTAATCAAAAGCTCAACGACTTTGGAAAATAAA
1 TAAAGCTTCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAA
*
92325 T-AAGC-TCTTCTAAACAGAGGCTCAACGACTTTGAAAAATAAA
1 TAAAGCTTC-TCTAATCAGAGGCTCAACGACTTTGAAAAATAAA
* * *
92367 CAAAGCTCCTCTAATCAGAGGCTCAATGAC-TTGAAAGAAAATAAA
1 TAAAGCTTCTCTAATCAGAGGCTCAACGACTTTG--A-AAAATAAA
* * *
92412 CAAAGCTTATATAATCAGAGGCTCAACGACTTTGAAAAATAAA
1 TAAAGCTTCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAA
* * *
92455 TAAAACTCCTCTAAACAGAGGCTCAACGAC-TTGAAAGAAAATAAA
1 TAAAGCTTCTCTAATCAGAGGCTCAACGACTTTG--A-AAAATAAA
* *
92500 TAAAGCTCCTCTAATCAGAGGCTCAACAACTTTGAAAAATAAA
1 TAAAGCTTCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAA
92543 TAAAGCTTCTCTAAAT-AGAGGCTCA
1 TAAAGCTTCTCT-AATCAGAGGCTCA
92568 TAACTTTTGA
Statistics
Matches: 391, Mismatches: 49, Indels: 44
0.81 0.10 0.09
Matches are distributed among these distances:
41 1 0.00
42 46 0.12
43 182 0.47
44 12 0.03
45 139 0.36
46 11 0.03
ACGTcount: A:0.45, C:0.20, G:0.13, T:0.22
Consensus pattern (43 bp):
TAAAGCTTCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAA
Found at i:92225 original size:88 final size:86
Alignment explanation
Indices: 92064--92567 Score: 566
Period size: 88 Copynumber: 5.8 Consensus size: 86
92054 AATTTTGATT
* * * * * *
92064 AAAGCTCCCCTAAACAGAGGCTCAACGACTTTGAAAAATAAATAAAACTTCTCTAAACAAAGGCT
1 AAAGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAAGCTCCTCTAATCAGAGGCT
*
92129 CAATGACTTTAAAAAATAAAC
66 CAACGACTTTAAAAAATAAAC
* * * *
92150 AAAGCTCATCTAATCAGAGGCTCAATGAC-TTGAAAGAAAATAAATGAAGCTCTTCTAATCAGAG
1 AAAGCTCCTCTAATCAGAGGCTCAACGACTTTG--A-AAAATAAATAAAGCTCCTCTAATCAGAG
*
92214 GCTCAACGACTTTGAAAAATAAAC
63 GCTCAACGACTTTAAAAAATAAAC
* * * * * *
92238 AAAGCTCCTCTAATCAAAGGCTCAATGAC-TAGAAAGAAAATAAACAAAGCTCCTCTAATCAAAA
1 AAAGCTCCTCTAATCAGAGGCTCAACGACTTTG--A-AAAATAAATAAAGCTCCTCTAATCAGAG
**
92302 GCTCAACGACTTTGGAAAATAAA-
63 GCTCAACGACTTTAAAAAATAAAC
* * * *
92325 TAAGCTCTTCTAAACAGAGGCTCAACGACTTTGAAAAATAAACAAAGCTCCTCTAATCAGAGGCT
1 AAAGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAAGCTCCTCTAATCAGAGGCT
* *
92390 CAATGACTTGAAAGAAAATAAAC
66 CAACGACTT-TAA-AAAATAAAC
** * * *
92413 AAAGCTTATATAATCAGAGGCTCAACGACTTTGAAAAATAAATAAAACTCCTCTAAACAGAGGCT
1 AAAGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAAGCTCCTCTAATCAGAGGCT
* *
92478 CAACGACTTGAAAGAAAATAAAT
66 CAACGACTT-TAA-AAAATAAAC
* *
92501 AAAGCTCCTCTAATCAGAGGCTCAACAACTTTGAAAAATAAATAAAGCTTCTCTAAAT-AGAGGC
1 AAAGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAAGCTCCTCT-AATCAGAGGC
92565 TCA
65 TCA
92568 TAACTTTTGA
Statistics
Matches: 360, Mismatches: 50, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
85 40 0.11
86 26 0.07
87 33 0.09
88 259 0.72
89 2 0.01
ACGTcount: A:0.45, C:0.20, G:0.13, T:0.22
Consensus pattern (86 bp):
AAAGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAAGCTCCTCTAATCAGAGGCT
CAACGACTTTAAAAAATAAAC
Found at i:92443 original size:218 final size:219
Alignment explanation
Indices: 92064--92567 Score: 771
Period size: 218 Copynumber: 2.3 Consensus size: 219
92054 AATTTTGATT
* * * *
92064 AAAGCTCCCCTAAACAGAGGCTCAACGACTTTGAAAAATAAATAAAACTTCTCTAAACAAAGGCT
1 AAAGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAAGCTTCTCTAAACAGAGGCT
*
92129 CAATGACTTTAAAAAATAAACAAAGCTCATCTAATCAGAGGCTCAATGACTTGAAAGAAAATAAA
66 CAACGACTTTAAAAAATAAACAAAGCTCATCTAATCAGAGGCTCAATGACTTGAAAGAAAATAAA
** * * *
92194 TGAAGCTCTTCTAATCAGAGGCTCAACGACTTTGAAAAATAAACAAAGCTCCTCTAATCAAAGGC
131 CAAAGCTCTTATAATCAGAGGCTCAACGACTTTGAAAAATAAACAAAACTCCTCTAAACAAAGGC
*
92259 TCAATGACTAGAAAGAAAATAAAC
196 TCAACGACTAGAAAGAAAATAAAC
* * *
92283 AAAGCTCCTCTAATCAAAAGCTCAACGACTTTGGAAAATAAAT-AAGC-TCTTCTAAACAGAGGC
1 AAAGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAAGCTTC-TCTAAACAGAGGC
* *
92346 TCAACGACTTTGAAAAATAAACAAAGCTCCTCTAATCAGAGGCTCAATGACTTGAAAGAAAATAA
65 TCAACGACTTTAAAAAATAAACAAAGCTCATCTAATCAGAGGCTCAATGACTTGAAAGAAAATAA
* *
92411 ACAAAGCT-TATATAATCAGAGGCTCAACGACTTTGAAAAATAAATAAAACTCCTCTAAACAGAG
130 ACAAAGCTCT-TATAATCAGAGGCTCAACGACTTTGAAAAATAAACAAAACTCCTCTAAACAAAG
* *
92475 GCTCAACGACTTGAAAGAAAATAAAT
194 GCTCAACGACTAGAAAGAAAATAAAC
* *
92501 AAAGCTCCTCTAATCAGAGGCTCAACAACTTTGAAAAATAAATAAAGCTTCTCTAAATAGAGGCT
1 AAAGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAAGCTTCTCTAAACAGAGGCT
92566 CA
66 CA
92568 TAACTTTTGA
Statistics
Matches: 256, Mismatches: 25, Indels: 8
0.89 0.09 0.03
Matches are distributed among these distances:
217 3 0.01
218 194 0.76
219 57 0.22
220 2 0.01
ACGTcount: A:0.45, C:0.20, G:0.13, T:0.22
Consensus pattern (219 bp):
AAAGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATAAAGCTTCTCTAAACAGAGGCT
CAACGACTTTAAAAAATAAACAAAGCTCATCTAATCAGAGGCTCAATGACTTGAAAGAAAATAAA
CAAAGCTCTTATAATCAGAGGCTCAACGACTTTGAAAAATAAACAAAACTCCTCTAAACAAAGGC
TCAACGACTAGAAAGAAAATAAAC
Found at i:93600 original size:22 final size:22
Alignment explanation
Indices: 93575--93616 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
93565 CATTCCCTTT
*
93575 TTTTTTCTTTTCATTTTTTTCA
1 TTTTTTCATTTCATTTTTTTCA
93597 TTTTTTCATTTCATTTTTTT
1 TTTTTTCATTTCATTTTTTT
93617 AAGCATAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.79
Consensus pattern (22 bp):
TTTTTTCATTTCATTTTTTTCA
Done.