Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168489.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_87, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102453
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.34
Warning! 1000 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:2255 original size:468 final size:465
Alignment explanation
Indices: 933--2985 Score: 2346
Period size: 467 Copynumber: 4.4 Consensus size: 465
923 TTAAACATGA
* * * * *
933 AAACGTGATAACCTACATTTG-TTTTAATTTTTCACTGTGTTATATGTAAGTCATTAAGGATTTT
1 AAACATGATAACCTACA-TTGATTTTAATTTTTCACAGTGTTAAATGTAAGTCATGAAAGATTTT
* * *
997 GGAGTTGAAAA-ATCAAAATTTT-GTTTCTAAA-AAGTTACGG-CATAAAAACGATCTGCACAAT
65 GGAGCTGAAAATATC-AAATTTTCGTTTCTAAACAA-TTATGGACATAAAAACCATCTGCACAAT
* * * * * * ** *
1058 TTTATATTGCGATATAAAAACCATTTGCACAATTTTAATTTTTTATGCGAATTTGCTCTATTATA
128 TTCAAATTGTGATATAAAAACCATTTGCA-GATTTTTATTTTTCATGCTTATTTG--CT-TTAGA
* **
1123 TGCATTTTCAAGAGAATTCATGGGTGCTCCAAAAAATTTATGAGATGCTATTGATATTTGGATAT
189 TGCATTTTTAAGAGAATTCATAAGTGCTCCAAAAAATTTATGAGATGCTATTGATATTTGGATAT
* * * * * *
1188 CATTTTTGAAATCGTTACTAGCGCTTGTTGCGATTAAACTATGTGCTAATTTATTTTTATACATT
254 CATTTGTGAAATCGTTATTAGCGCTTGATACAATT-AACTATGTGCTAACTTATTTTTATACATT
* * *
1253 ACGCACAAACTCAAAGTTCAACGCTTTTGAAACTTTTATGTTTTGCTTTGAAAACCATTTCTATT
318 ACGCACAAACTCAAAGCTCAACGCTTTTGAAGCTTTTATGTTTTGCTTTGAAAACCATTTCTACT
* *
1318 GGAGTCGAGCTTTAAAAGGATGAAATATTGTTTTAACAAGTTTTTAAATGAAAATTAATAATTTT
383 GGAGTCGAGCTTTAAAAGTATGAAATATTGTTTTAACAAGTTTTTAAATGAAAATGAATAATTTT
**
1383 AAACTGGCTCAAACACAG
448 AAACTCACTCAAACACAG
* * * * * * * *
1401 AAGCATGATAACCTGCACTGATTTTAATTTTT-ACAGTGTTAAGTATAACTTATGAAGGATTTTG
1 AAACATGATAACCTACATTGATTTTAATTTTTCACAGTGTTAAATGTAAGTCATGAAAGATTTTG
* * *
1465 GAGCTGAAAATATCAAAATTTT-GTTTATGAACAATTATGGACATAAAAACCATCTCCACAATTT
66 GAGCTGAAAATATC-AAATTTTCGTTTCTAAACAATTATGGACATAAAAACCATCTGCACAATTT
* * *
1529 CAAATTGTGATATAAAAACCATTTGCACGATTTTTATTTTTCATGCTTATTTGCTCTAGAGGCAC
130 CAAATTGTGATATAAAAACCATTTGCA-GATTTTTATTTTTCATGCTTATTTGCTTTAGATGCAT
** ** * * * * *
1594 TTTT-AGAAGAATTCATAAGTGCTTTAGGAAATTTGTGAGACGCTGTTGATATTTGAATGTCATT
194 TTTTAAG-AGAATTCATAAGTGCTCCAAAAAATTTATGAGATGCTATTGATATTTGGATATCATT
* * * * * * *
1658 TGTGAAATCGTTATTGGC-CTTGATGCGATTAAATGTGTTACTAACTTGTTTTTATACATTACGC
258 TGTGAAATCGTTATTAGCGCTTGATACAATTAACTATG-TGCTAACTTATTTTTATACATTACGC
* * *
1722 ACAAACTCAAAGCTCGATGCTTTTGAAGCTTTTATGTTTTGCTTTGAAAACCATTTCTGCTGGAG
322 ACAAACTCAAAGCTCAACGCTTTTGAAGCTTTTATGTTTTGCTTTGAAAACCATTTCTACTGGAG
* * *
1787 TCGAACTTTAAAAGTATGAAATGTTGTTTTAGCAAGTTTTTAAATGAAAATGAATAATTTTAAAC
387 TCGAGCTTTAAAAGTATGAAATATTGTTTTAACAAGTTTTTAAATGAAAATGAATAATTTTAAAC
*
1852 TCGCTCAAACACAG
452 TCACTCAAACACAG
* * * *
1866 AAACATGATAAACCTATATTTGATTTAAATTTTT-ACGGTGTTAAGTGTAAGTCATGAAAGATTT
1 AAACATGAT-AACCTACA-TTGATTTTAATTTTTCACAGTGTTAAATGTAAGTCATGAAAGATTT
* * *
1930 TGGAGCTGAGAATATCAAATTTTCGCTTT-TGAACAATTATGGACATAAAAACTATCTGCACAAT
64 TGGAGCTGAAAATATCAAATTTTCG-TTTCTAAACAATTATGGACATAAAAACCATCTGCACAAT
*
1994 TTCAAATTGTGATATAAAAACCATTTGCATGATTTTTACTTTTTCATGCTCATTTGCTTTAGATG
128 TTCAAATTGTGATATAAAAACCATTTGCA-GATTTTTA-TTTTTCATGCTTATTTGCTTTAGATG
*
2059 CATTTTTAAGAGAATTCATGAGTGCTCCAAAAAATTTATGAGATGCTATTGATATTTGGATATCA
191 CATTTTTAAGAGAATTCATAAGTGCTCCAAAAAATTTATGAGATGCTATTGATATTTGGATATCA
* * * **
2124 TTTGTGAAATTGTTATTAGCGCTTGATACAATTAATTGTGTGCTAACTTGCTTTTATACATTACG
256 TTTGTGAAATCGTTATTAGCGCTTGATACAATTAACTATGTGCTAACTTATTTTTATACATTACG
* * * * * * * *
2189 CACAAATTCAAAGCTCGACGCTTATGAAG-TTTTAACGTTTTACTTTGAAAATCATTTATGCTGG
321 CACAAACTCAAAGCTCAACGCTTTTGAAGCTTTT-ATGTTTTGCTTTGAAAACCATTTCTACTGG
* * * *
2253 AGTCGAGCTTTAAAAGTATGAAATATTATTTTAATAAGTTTTAAAATGAAAATGAATAGTTTTAA
385 AGTCGAGCTTTAAAAGTATGAAATATTGTTTTAACAAGTTTTTAAATGAAAATGAATAATTTTAA
* *
2318 ACTCACTAAAACACAA
450 ACTCACTCAAACACAG
* * * * * *
2334 AAAAATAAT-ACGTTACATTGATTTTAATTTTTCACAATATTAAACGTAAGTCATGAAAGATTTT
1 AAACATGATAAC-CTACATTGATTTTAATTTTTCACAGTGTTAAATGTAAGTCATGAAAGATTTT
* * *
2398 GGAGCTGAAAATATCAAAATTTCATTTCTAAACAATTAT-GAGCATAAAAACCATATGCACAATT
65 GGAGCTGAAAATATCAAATTTTCGTTTCTAAACAATTATGGA-CATAAAAACCATCTGCACAATT
* *
2462 TCAAATTGTGAT-TAAAAACCAATTTGCACGATTTTTGATTTTTCATACTTATTTGCTTTATATG
129 TCAAATTGTGATATAAAAACC-ATTTGCA-GATTTTT-ATTTTTCATGCTTATTTGCTTTAGATG
* ** * * *
2526 CATTTTTAAAAGAATTCATAAGTGCTCCAAGGAATTTGTGAGATGCTGTTGATATTTGGATGTCA
191 CATTTTTAAGAGAATTCATAAGTGCTCCAAAAAATTTATGAGATGCTATTGATATTTGGATATCA
* * * * * * * *
2591 TTTTTGAAATCATTATTGGCACTTGATGAGATTTAGCTATTTGCTAACTTATTTTTATACATTA-
256 TTTGTGAAATCGTTATTAGCGCTTGAT-ACAATTAACTATGTGCTAACTTATTTTTATACATTAC
* * ** * *
2655 -CACAAACTCAAAGCTCAACGTTTTTGAAGCTTTTATGTTTTGCTTTAAAAATAATTTCTATTGA
320 GCACAAACTCAAAGCTCAACGCTTTTGAAGCTTTTATGTTTTGCTTTGAAAACCATTTCTACTGG
* * *
2719 AATCGAGCTTTAAAAGTATGAAATATTGTTTTAACAAATTTTTAAATGAAAATTAATAATTTTAA
385 AGTCGAGCTTTAAAAGTATGAAATATTGTTTTAACAAGTTTTTAAATGAAAATGAATAATTTTAA
*
2784 ACTCACTCAAACACAA
450 ACTCACTCAAACACAG
* * * * * *
2800 AAACATGATAATCTGCATTG-TTTTAATTTTTCACTA-TGTTAAATGTAAATCCTAAAATATTTT
1 AAACATGATAACCTACATTGATTTTAATTTTTCAC-AGTGTTAAATGTAAGTCATGAAAGATTTT
* * * * * * *
2863 GAAGTTAAAAATATCAAAATTTCGTTTCTAAACAATTA-CGAGCATAAAAACCCTATGCACAATT
65 GGAGCTGAAAATATCAAATTTTCGTTTCTAAACAATTATGGA-CATAAAAACCATCTGCACAATT
* * * * * * *
2927 TTATATTGTGATATAAAAATCATTTGCACAGTTTTAATTTTTCACGTTTATTTGCTTTA
129 TCAAATTGTGATATAAAAACCATTTGCAGA-TTTTTATTTTTCATGCTTATTTGCTTTA
2986 AAAGTTCTTA
Statistics
Matches: 1360, Mismatches: 198, Indels: 58
0.84 0.12 0.04
Matches are distributed among these distances:
464 26 0.02
465 290 0.21
466 253 0.19
467 380 0.28
468 325 0.24
469 86 0.06
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.39
Consensus pattern (465 bp):
AAACATGATAACCTACATTGATTTTAATTTTTCACAGTGTTAAATGTAAGTCATGAAAGATTTTG
GAGCTGAAAATATCAAATTTTCGTTTCTAAACAATTATGGACATAAAAACCATCTGCACAATTTC
AAATTGTGATATAAAAACCATTTGCAGATTTTTATTTTTCATGCTTATTTGCTTTAGATGCATTT
TTAAGAGAATTCATAAGTGCTCCAAAAAATTTATGAGATGCTATTGATATTTGGATATCATTTGT
GAAATCGTTATTAGCGCTTGATACAATTAACTATGTGCTAACTTATTTTTATACATTACGCACAA
ACTCAAAGCTCAACGCTTTTGAAGCTTTTATGTTTTGCTTTGAAAACCATTTCTACTGGAGTCGA
GCTTTAAAAGTATGAAATATTGTTTTAACAAGTTTTTAAATGAAAATGAATAATTTTAAACTCAC
TCAAACACAG
Found at i:2766 original size:934 final size:927
Alignment explanation
Indices: 932--2985 Score: 2604
Period size: 934 Copynumber: 2.2 Consensus size: 927
922 TTTAAACATG
* * *
932 AAAACGTGATAACCTACATTTGTTTTAATTTTTCACTGTGTTATATGTAAGTCATTAAGGATTTT
1 AAAACATGATAACCTACATTTGTTTTAATTTTTCACTGTGTTA-ATGTAAGTCATAAAAGATTTT
* * *
997 GGAGTTGAAAAATCAAAATTTT-GTTTCTAAAAAGTTACGG-CATAAAAACGATCTGCACAATTT
65 GGAGTTGAAATATC-AAATTTTCGTTTCTAACAA-TTA-GGACATAAAAACCATCTGCACAATTT
* * * *
1060 TATATTGCGATATAAAAACCATTTGCACAATTTTAATTTTTTATGCGAATTTGCTCTATTATATG
127 TATATTGTGATATAAAAACCATTTGCACAATTTTAATTTTTCATGCTAATTTG--CT-TTAGATG
*
1125 CATTTTCAAGAGAATTCATGGGTGCTCCAAAAAATTTATGAGATGCTATTGATATTTGGATATCA
189 CATTTTCAAGAGAATTCATGAGTGCTCCAAAAAATTTATGAGATGCTATTGATATTTGGATATCA
* * * * * *
1190 TTTTTGAAATCGTTACTAGCGCTTGTTGCGATTAAACTATGTGCTAATTTATTTTTATACATTAC
254 TTTGTGAAATCGTTACTAGCGCTTGATACAATTAAACTATGTGCTAACTTACTTTTATACATTAC
* * * * * *
1255 GCACAAACTCAAAGTTCAACGCTTTTGAAACTTTTATGTTTTGCTTTGAAAACCATTTCTATTGG
319 GCACAAACTCAAAGCTCAACGCTTATGAAACTTTTACGTTTTACTTTGAAAACCATTTATACTGG
* * *
1320 AGTCGAGCTTTAAAAGGATGAAATATTGTTTTAACAAGTTTTTAAATGAAAATTAATAATTTTAA
384 AGTCGAGCTTTAAAAGGATGAAATATTATTTTAACAAGTTTTAAAATGAAAATGAATAATTTTAA
** * * ** * * * * **
1385 ACTGGCTCAAACACAGAAGCATGATAACCTGCACTGATTTTAATTTTTACAGTGTTAAGTATAAC
449 ACTCACTAAAACACAAAAAAATAATAACCTACACTGATTTTAATTTTTACAATATTAAACATAAC
* * ** *
1450 TTATGAAGGATTTTGGAGCTGAAAATATCAAAATTTTGTTTATGAACAATTATGGACATAAAAAC
514 TCATGAAAGATTTTGGAGCTGAAAATATCAAAATTTCATTTATAAACAATTATGGACATAAAAAC
* *
1515 CATCTCCACAATTTCAAATTGTGATATAAAAACCATTTGCACGATTTTTATTTTTCATGCTTATT
579 CATATCCACAATTTCAAATTGTGATATAAAAACCATTTGCACGATTTTTATTTTTCATACTTATT
* **
1580 TGCTCTAGAGGCACTTTTAGAAGAATTCATAAGTGCTTTAGGAAATTTGTGAGACGCTGTTGATA
644 TGCTCTAGAGGCACTTTTAAAAGAATTCATAAGTGCTCAAGGAAATTTGTGAGACGCTGTTGATA
* * * *
1645 TTTGAATGTCATTTGTGAAATCGTTATTGGCCTTGATGCGATTAAATGTGTTACTAACTTGTTTT
709 TTTGAATGTCATTTGTGAAATCATTATTGGCCTTGATGAGATTAAATATGTTACTAACTTATTTT
* * * *
1710 TATACATTACGCACAAACTCAAAGCTCGATGCTTTTGAAGCTTTTATGTTTTGCTTTGAAAACCA
774 TATACATTAC-CACAAACTCAAAGCTCAACGCTTTTGAAGCTTTTATGTTTTGCTTTAAAAACAA
* * * * * *
1775 TTTCTGCTGGAGTCGAACTTTAAAAGTATGAAATGTTGTTTTAGCAAGTTTTTAAATGAAAATGA
838 TTTCTACTGAAATCGAACTTTAAAAGTATGAAATATTGTTTTAACAAATTTTTAAATGAAAATGA
*
1840 ATAATTTTAAACTCGCTCAAACACA
903 ATAATTTTAAACTCACTCAAACACA
* * * * *
1865 GAAACATGATAAACCTATATTTGATTTAAATTTTT-ACGGTGTTAAGTGTAAGTCATGAAAGATT
1 AAAACATGAT-AACCTACATTTG-TTTTAATTTTTCACTGTGTTAA-TGTAAGTCATAAAAGATT
* *
1929 TTGGAGCTGAGAATATCAAATTTTCGCTTT-TGAACAATTATGGACATAAAAACTATCTGCACAA
63 TTGGAGTTGA-AATATCAAATTTTCG-TTTCT-AACAATTA-GGACATAAAAACCATCTGCACAA
* * * * * *
1993 TTTCAAATTGTGATATAAAAACCATTTGCATGATTTTTACTTTTTCATGCTCATTTGCTTTAGAT
124 TTTTATATTGTGATATAAAAACCATTTGCA-CAATTTTAATTTTTCATGCTAATTTGCTTTAGAT
*
2058 GCATTTTTAAGAGAATTCATGAGTGCTCCAAAAAATTTATGAGATGCTATTGATATTTGGATATC
188 GCATTTTCAAGAGAATTCATGAGTGCTCCAAAAAATTTATGAGATGCTATTGATATTTGGATATC
* * * * *
2123 ATTTGTGAAATTGTTATTAGCGCTTGATACAATT-AATTGTGTGCTAACTTGCTTTTATACATTA
253 ATTTGTGAAATCGTTACTAGCGCTTGATACAATTAAACTATGTGCTAACTTACTTTTATACATTA
* * * * *
2187 CGCACAAATTCAAAGCTCGACGCTTATG-AAGTTTTAACGTTTTACTTTGAAAATCATTTATGCT
318 CGCACAAACTCAAAGCTCAACGCTTATGAAACTTTT-ACGTTTTACTTTGAAAACCATTTATACT
* * *
2251 GGAGTCGAGCTTTAAAAGTATGAAATATTATTTTAATAAGTTTTAAAATGAAAATGAATAGTTTT
382 GGAGTCGAGCTTTAAAAGGATGAAATATTATTTTAACAAGTTTTAAAATGAAAATGAATAATTTT
* * *
2316 AAACTCACTAAAACACAAAAAAATAAT-ACGTTACATTGATTTTAATTTTTCACAATATTAAACG
447 AAACTCACTAAAACACAAAAAAATAATAAC-CTACACTGATTTTAATTTTT-ACAATATTAAACA
* *
2380 TAAGTCATGAAAGATTTTGGAGCTGAAAATATCAAAATTTCATTTCTAAACAATTAT-GAGCATA
510 TAACTCATGAAAGATTTTGGAGCTGAAAATATCAAAATTTCATTTATAAACAATTATGGA-CATA
*
2444 AAAACCATATGCACAATTTCAAATTGTGAT-TAAAAACCAATTTGCACGATTTTTGATTTTTCAT
574 AAAACCATATCCACAATTTCAAATTGTGATATAAAAACC-ATTTGCACGATTTTT-ATTTTTCAT
* * * * *
2508 ACTTATTTGCTTTATATGCATTTTTAAAAGAATTCATAAGTGCTCCAAGG-AATTTGTGAGATGC
637 ACTTATTTGCTCTAGAGGCACTTTTAAAAGAATTCATAAGTGCT-CAAGGAAATTTGTGAGACGC
* * ** *
2572 TGTTGATATTTGGATGTCATTTTTGAAATCATTATTGGCACTTGATGAGATTTAGCTAT-TTGCT
701 TGTTGATATTTGAATGTCATTTGTGAAATCATTATTGGC-CTTGATGAGA-TTAAATATGTTACT
*
2636 AACTTATTTTTATACATTA-CACAAACTCAAAGCTCAACGTTTTTGAAGCTTTTATGTTTTGCTT
764 AACTTATTTTTATACATTACCACAAACTCAAAGCTCAACGCTTTTGAAGCTTTTATGTTTTGCTT
* * *
2700 TAAAAATAATTTCTATTGAAATCGAGCTTTAAAAGTATGAAATATTGTTTTAACAAATTTTTAAA
829 TAAAAACAATTTCTACTGAAATCGAACTTTAAAAGTATGAAATATTGTTTTAACAAATTTTTAAA
*
2765 TGAAAATTAATAATTTTAAACTCACTCAAACACA
894 TGAAAATGAATAATTTTAAACTCACTCAAACACA
* * * * * *
2799 AAAACATGATAATCTGCA-TTGTTTTAATTTTTCACTATGTTAAATGTAAATCCTAAAATATTTT
1 AAAACATGATAACCTACATTTGTTTTAATTTTTCACTGTGTT-AATGTAAGTCATAAAAGATTTT
* * * * * *
2863 GAAGTTAAAAATATCAAAATTTCGTTTCTAAACAATTACGAGCATAAAAACCCTATGCACAATTT
65 GGAGTT-GAAATATCAAATTTTCGTTTCT-AACAATTAGGA-CATAAAAACCATCTGCACAATTT
* * * * *
2928 TATATTGTGATATAAAAATCATTTGCACAGTTTTAATTTTTCACGTTTATTTGCTTTA
127 TATATTGTGATATAAAAACCATTTGCACAATTTTAATTTTTCATGCTAATTTGCTTTA
2986 AAAGTTCTTA
Statistics
Matches: 959, Mismatches: 139, Indels: 48
0.84 0.12 0.04
Matches are distributed among these distances:
931 40 0.04
932 104 0.11
933 194 0.20
934 389 0.41
935 120 0.13
936 87 0.09
937 25 0.03
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.39
Consensus pattern (927 bp):
AAAACATGATAACCTACATTTGTTTTAATTTTTCACTGTGTTAATGTAAGTCATAAAAGATTTTG
GAGTTGAAATATCAAATTTTCGTTTCTAACAATTAGGACATAAAAACCATCTGCACAATTTTATA
TTGTGATATAAAAACCATTTGCACAATTTTAATTTTTCATGCTAATTTGCTTTAGATGCATTTTC
AAGAGAATTCATGAGTGCTCCAAAAAATTTATGAGATGCTATTGATATTTGGATATCATTTGTGA
AATCGTTACTAGCGCTTGATACAATTAAACTATGTGCTAACTTACTTTTATACATTACGCACAAA
CTCAAAGCTCAACGCTTATGAAACTTTTACGTTTTACTTTGAAAACCATTTATACTGGAGTCGAG
CTTTAAAAGGATGAAATATTATTTTAACAAGTTTTAAAATGAAAATGAATAATTTTAAACTCACT
AAAACACAAAAAAATAATAACCTACACTGATTTTAATTTTTACAATATTAAACATAACTCATGAA
AGATTTTGGAGCTGAAAATATCAAAATTTCATTTATAAACAATTATGGACATAAAAACCATATCC
ACAATTTCAAATTGTGATATAAAAACCATTTGCACGATTTTTATTTTTCATACTTATTTGCTCTA
GAGGCACTTTTAAAAGAATTCATAAGTGCTCAAGGAAATTTGTGAGACGCTGTTGATATTTGAAT
GTCATTTGTGAAATCATTATTGGCCTTGATGAGATTAAATATGTTACTAACTTATTTTTATACAT
TACCACAAACTCAAAGCTCAACGCTTTTGAAGCTTTTATGTTTTGCTTTAAAAACAATTTCTACT
GAAATCGAACTTTAAAAGTATGAAATATTGTTTTAACAAATTTTTAAATGAAAATGAATAATTTT
AAACTCACTCAAACACA
Found at i:3138 original size:14 final size:14
Alignment explanation
Indices: 3105--3148 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
3095 TATAACAAAT
3105 ATAAAAAA-AAAAG
1 ATAAAAAATAAAAG
*
3118 ATCTAAAAAATCAAAG
1 A--TAAAAAATAAAAG
3134 ATAAAAAATAAAAG
1 ATAAAAAATAAAAG
3148 A
1 A
3149 AAAGTCAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
13 1 0.04
14 13 0.50
15 7 0.27
16 5 0.19
ACGTcount: A:0.75, C:0.05, G:0.07, T:0.14
Consensus pattern (14 bp):
ATAAAAAATAAAAG
Found at i:3249 original size:23 final size:22
Alignment explanation
Indices: 3223--3278 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
3213 AATTGCAAAG
*
3223 AAAAAATAAA-AAAAATGTGAACA
1 AAAAAATAAAGAAAAA-G-CAACA
*
3246 AAAAAATATAAGAAAAAGCAAGA
1 AAAAAATA-AAGAAAAAGCAACA
3269 AAAAAATAAA
1 AAAAAATAAA
3279 TTTCAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
22 2 0.07
23 19 0.66
24 3 0.10
25 5 0.17
ACGTcount: A:0.77, C:0.04, G:0.09, T:0.11
Consensus pattern (22 bp):
AAAAAATAAAGAAAAAGCAACA
Found at i:3782 original size:25 final size:26
Alignment explanation
Indices: 3725--3782 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
3715 CAAACAAAAA
*
3725 ATAAAAAA-ATATAAGAAATAATAAG
1 ATAAAAAATATATAAAAAATAATAAG
* *
3750 A-AATAAATATATAAAAAATCA-AAG
1 ATAAAAAATATATAAAAAATAATAAG
3774 ATAAAAAAT
1 ATAAAAAAT
3783 TAAAAGAAGA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
24 9 0.33
25 18 0.67
ACGTcount: A:0.72, C:0.02, G:0.05, T:0.21
Consensus pattern (26 bp):
ATAAAAAATATATAAAAAATAATAAG
Found at i:4117 original size:27 final size:25
Alignment explanation
Indices: 4083--4149 Score: 71
Period size: 27 Copynumber: 2.6 Consensus size: 25
4073 AGTATTCTGT
* *
4083 AAAAAAAAAAAAATGAATGAAAATA
1 AAAAAAAAAAAAAAGAAAGAAAATA
*
4108 AAAAAGAAAAGAAAAAGAAAGTAAATA
1 AAAAA-AAAA-AAAAAGAAAGAAAATA
*
4135 AAGAAATAAAAAAAA
1 AA-AAAAAAAAAAAA
4150 TTCTACAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
25 5 0.14
26 9 0.26
27 18 0.51
28 3 0.09
ACGTcount: A:0.81, C:0.00, G:0.10, T:0.09
Consensus pattern (25 bp):
AAAAAAAAAAAAAAGAAAGAAAATA
Found at i:12627 original size:151 final size:151
Alignment explanation
Indices: 12429--12711 Score: 464
Period size: 151 Copynumber: 1.9 Consensus size: 151
12419 AGCTTCAAAG
*
12429 AATCCAGCAAAAGAAATAATCTCACTTTTTAAGCATTCAACCACAATGCATGTCAAAATTAAGTT
1 AATCCAGAAAAAGAAATAATCTCACTTTTTAAGCATTCAACCACAATGCATGTCAAAATTAAGTT
* *
12494 GT-AGAAATGAAACATAACAAACCAATCTGTCCTGTAACAAACAGAGTGAAACCAACAAAACAAA
66 -TCAAAAATGAAACATAACAAACCAATCTGTCCTGTAACAAACAGAATGAAACCAACAAAACAAA
12558 AAAAAAAGAGTAAAAATTTAAA
130 AAAAAAAGAGTAAAAATTTAAA
12580 AATCCAGAAAAAAGAAATAATCTTC-C-TTTTAAGCATTCAACCACAATGCATGTCAAAATTAAG
1 AATCCAG-AAAAAGAAATAATC-TCACTTTTTAAGCATTCAACCACAATGCATGTCAAAATTAAG
* * *
12643 TTTCAAAAATGAAACCTAACAAACCAATCTGTCCTGTAACAAATAGAATGAAAGCAACAAAACAA
64 TTTCAAAAATGAAACATAACAAACCAATCTGTCCTGTAACAAACAGAATGAAACCAACAAAACAA
12708 AAAA
129 AAAA
12712 CTCCCAAAAT
Statistics
Matches: 123, Mismatches: 6, Indels: 6
0.91 0.04 0.04
Matches are distributed among these distances:
150 1 0.01
151 106 0.86
152 14 0.11
153 2 0.02
ACGTcount: A:0.51, C:0.18, G:0.10, T:0.21
Consensus pattern (151 bp):
AATCCAGAAAAAGAAATAATCTCACTTTTTAAGCATTCAACCACAATGCATGTCAAAATTAAGTT
TCAAAAATGAAACATAACAAACCAATCTGTCCTGTAACAAACAGAATGAAACCAACAAAACAAAA
AAAAAAGAGTAAAAATTTAAA
Found at i:22717 original size:24 final size:23
Alignment explanation
Indices: 22689--22752 Score: 58
Period size: 24 Copynumber: 2.6 Consensus size: 23
22679 TGTAATTTAA
*
22689 TTAAATTTTAATTTAGTCAAAT-TT
1 TTAAATTTTAATTT-G-AAAATATT
*
22713 TTAAAATTATAAATTTGAAAATATT
1 TT-AAATT-TTAATTTGAAAATATT
22738 TTAAATGTTTAATTT
1 TTAAAT-TTTAATTT
22753 TTTTTTCATA
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
24 16 0.48
25 11 0.33
26 6 0.18
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.52
Consensus pattern (23 bp):
TTAAATTTTAATTTGAAAATATT
Found at i:25734 original size:106 final size:106
Alignment explanation
Indices: 25547--25758 Score: 397
Period size: 106 Copynumber: 2.0 Consensus size: 106
25537 AGTTTCTTTA
25547 CTTCAAGAACATATCCACAGGCAGCAAGTGAAAAAAGAGAGGAGAAAACAAGAGAAGGGGCTTCC
1 CTTCAAGAACATATCCACAGGCAGCAAGTGAAAAAAGAGAGGAGAAAACAAGAGAAGGGGCTTCC
* * *
25612 TCACAAACCACTAGCTGACAATTAAATATTAGTTCTGGTTG
66 TCACAAACCACCAGCTGACAATTAAATATCAGTTCTAGTTG
25653 CTTCAAGAACATATCCACAGGCAGCAAGTGAAAAAAGAGAGGAGAAAACAAGAGAAGGGGCTTCC
1 CTTCAAGAACATATCCACAGGCAGCAAGTGAAAAAAGAGAGGAGAAAACAAGAGAAGGGGCTTCC
25718 TCACAAACCACCAGCTGACAATTAAATATCAGTTCTAGTTG
66 TCACAAACCACCAGCTGACAATTAAATATCAGTTCTAGTTG
25759 ACCAAACACA
Statistics
Matches: 103, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 103 1.00
ACGTcount: A:0.41, C:0.20, G:0.21, T:0.18
Consensus pattern (106 bp):
CTTCAAGAACATATCCACAGGCAGCAAGTGAAAAAAGAGAGGAGAAAACAAGAGAAGGGGCTTCC
TCACAAACCACCAGCTGACAATTAAATATCAGTTCTAGTTG
Found at i:28900 original size:27 final size:27
Alignment explanation
Indices: 28870--28936 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
28860 TTTTGTAGAA
*
28870 TTTTTTTTATTTCTTTATTTACTTTC-T
1 TTTTTTTTATTT-TTTATTTACATTCAT
* *
28897 TTTTCTTTTCTTTTTTATTTTCATTCAT
1 TTTT-TTTTATTTTTTATTTACATTCAT
28925 TTTTTTTT-TTTT
1 TTTTTTTTATTTT
28937 ACAGAATACT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
26 4 0.11
27 19 0.54
28 12 0.34
ACGTcount: A:0.09, C:0.10, G:0.00, T:0.81
Consensus pattern (27 bp):
TTTTTTTTATTTTTTATTTACATTCAT
Found at i:29696 original size:18 final size:17
Alignment explanation
Indices: 29657--29709 Score: 54
Period size: 18 Copynumber: 3.1 Consensus size: 17
29647 AAATTTTTCA
*
29657 TTAATTTTTTTATT-TT
1 TTAATTTTTTTTTTCTT
*
29673 TAAATTGTTTTTTTTCTT
1 TTAATT-TTTTTTTTCTT
*
29691 TTAATTTATTTGTTTCTT
1 TTAATTT-TTTTTTTCTT
29709 T
1 T
29710 GCTTTCATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
16 5 0.17
17 8 0.27
18 17 0.57
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.75
Consensus pattern (17 bp):
TTAATTTTTTTTTTCTT
Found at i:31495 original size:465 final size:467
Alignment explanation
Indices: 30063--32385 Score: 2291
Period size: 465 Copynumber: 5.0 Consensus size: 467
30053 AGACCTTTTG
* * * * *
30063 AAGCAAATAAAGCGTGGAAAAATTAAAA-CTGTGGCAAATGATTTTTATATCACAATAT-AAAAT
1 AAGCAAAT-AAGCAT-GAAAAATAAAAATC-GT-GCAAATGGTTTTTATATCACAATTTGAAATT
* * * * * * * *
30126 GTGCA-CTAGGGTTTTATG-CCGTAATTGTTTAGAAACGAAATTTTGATATTTTTAACCTTGCAA
62 GTGCAGAT-GGTTTTTATGTCCATAATTGTTCAGAAACAAAATTTTGATA-TTTTCAGC-TCCAA
** * * * * * * * *
30189 AATATTTTAGGATTTACAATTTAACAGTAGTGAAAAATTAAAA-CAATGCAGATTATCATGTTTT
124 AATCCTTCATGACTTAC-ACTTAACACT-GTGAAAAATTAAAATCAATGTAGGTTATCATGTTTC
* *
30253 TGTGTTTGAGTGAGTTTAAAATTATTAATTTTCATTTAAAAA-TTGTTAAAAACAATATTTCATA
187 TGTGTTTGAGCGAGTTTAAAATTATTCATTTTCATTTAAAAACTTGTT-AAAACAATATTTCATA
* * ** ** * * *
30317 CTTTTAAAGCTCGATTTCAATAGAAATTATTTTTAAAGCAAAACATAAAAGCTTCAAAAACGTTG
251 CTTTTAAAGCTCGACTCCAGCAGAAATGGTTTTCAAAGCAAAACATAAAAGCTTCAAAAGCGTCG
* * * * * * *
30382 AGCTTTGAGTTTG-GTGTAATGTATAAAAATAAGTTAGCAA-ATAGCTAAATCTCATCAAGTGCC
316 AGCTTTGAGTTTGTGCGTAATGTATAAAAACAAGTTAG-AACACAGTTTAATCGCATCAAGCGCC
*
30445 AATAATGATTTCAAAAAATGACATCCAAATAATCAACAGCATCTCACAAA-TTCCTTGGAGCACT
380 AATAACGATTTC-AAAAATGACATCCAAAT-ATCAACAGCATCTCACAAATTTCC-TGGAGCACT
* *
30509 TATGAATTCTTTTAAAAATGCATATA
442 CATGAATTCTCTTAAAAATGCATATA
*
30535 AAGGCAAATAAGTATGAAAAATCAAAAATCGTGCAAATTGGTTTTTA-ATCACAATTTGAAATTG
1 AA-GCAAATAAGCATGAAAAAT-AAAAATCGTGCAAA-TGGTTTTTATATCACAATTTGAAATTG
* * **
30599 TGCATATGGTTTTTATG-CTCATAATTGTTTAGAAATGAAATTTTGATATTTTCAGCTCCAAAAT
63 TGCAGATGGTTTTTATGTC-CATAATTGTTCAGAAACAAAATTTTGATATTTTCAGCTCCAAAAT
* ** * * * * * *
30663 CTTTCATGACTTACGTTTAATATTGTGAAAAATTAAAATCAATGTAACG-TATTATTTTTTTGTT
127 CCTTCATGACTTACACTTAACACTGTGAAAAATTAAAATCAATGT-AGGTTATCATGTTTCTG-T
* * * * * *
30727 GTTTTAGTGAGTTTAAAACTATTCATTTTCATTTTAAAACTTATTAAAATAATATTTCATACTTT
190 GTTTGAGCGAGTTTAAAATTATTCATTTTCATTTAAAAACTTGTTAAAACAATATTTCATACTTT
* * * * *
30792 TAAAGCTCGACTCCAGCATAAATGATTTTCAAAGTAAAACGTTAAAA-CTTCATAAGCGTCGAGC
255 TAAAGCTCGACTCCAGCAGAAATGGTTTTCAAAGCAAAAC-ATAAAAGCTTCAAAAGCGTCGAGC
* * * * * * *
30856 TTTGAATTTGTGCGTAATGTAT-AAAGCAAGTTAGCACACA-ATTAATTGTATCAAGCGCTAATA
319 TTTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGAACACAGTTTAATCGCATCAAGCGCCAATA
* * * * * **
30919 ACAATTTCACAAATGATATCCAAATATCAATAGCATCTCATAAATTTTTTGGAGCACTCATGAAT
384 ACGATTTCAAAAATGACATCCAAATATCAACAGCATCTCACAAATTTCCTGGAGCACTCATGAAT
*
30984 TCTCTTAAAAATGCATCTA
449 TCTCTTAAAAATGCATATA
* *
31003 AAGCAAATGAGCATGAAAAAGTAAAAATCATGCAAATGGTTTTTATATCACAATTTGAAATTGTG
1 AAGCAAATAAGCATGAAAAA-TAAAAATCGTGCAAATGGTTTTTATATCACAATTTGAAATTGTG
* * *
31068 CAGATAGTTTTTACGTCCATAATTGTTCA-AAAGCGAAAA-TTTGATATTCTCAGCTCCAAAA-C
65 CAGATGGTTTTTATGTCCATAATTGTTCAGAAA-C-AAAATTTTGATATTTTCAGCTCCAAAATC
* * *
31130 CTTTCATGACTTACACTTAACACCGT-AAAAATTTAAATCAATATAGGTTATCATGTTTCTGTGT
128 C-TTCATGACTTACACTTAACACTGTGAAAAATTAAAATCAATGTAGGTTATCATGTTTCTGTGT
* *
31194 TTGAGCGAGTTTAAAATTATTCATTTTCATTTAAAAACTTGCTAAAACAACATTTCATACTTTTA
192 TTGAGCGAGTTTAAAATTATTCATTTTCATTTAAAAACTTGTTAAAACAATATTTCATACTTTTA
* *
31259 AAGTTCGACTCCAGCAGAAATGGTTTTCAAAGCAAAACATAAAAGCTTCAAAAGCATCGAGCTTT
257 AAGCTCGACTCCAGCAGAAATGGTTTTCAAAGCAAAACATAAAAGCTTCAAAAGCGTCGAGCTTT
31324 GAGTTTGTGCGTAATGTATAAAAACAAGTTAGTAACACA-TTTAATCGCATCAAG-GCCAATAAC
322 GAGTTTGTGCGTAATGTATAAAAACAAGTTAG-AACACAGTTTAATCGCATCAAGCGCCAATAAC
* * * ** *
31387 GATTTCACAAATGACATTCAAATATCAACAGCGTCTCACAAATTTCCTAAAGCACTTATGAATTC
386 GATTTCAAAAATGACATCCAAATATCAACAGCATCTCACAAATTTCCTGGAGCACTCATGAATTC
* * *
31452 T-TCTAAAAGTGCCTCTA
451 TCT-TAAAAATGCATATA
* *
31469 GAGCAAATAAGCATGAAAAATAAAAATCGTGCAAATGGTTTTTATATCACAATTTGAAATTGTGG
1 AAGCAAATAAGCATGAAAAATAAAAATCGTGCAAATGGTTTTTATATCACAATTTGAAATTGTGC
*
31534 AGATGGTTTTTATGTCCATAATTGTTCATAAACAAAATTTTGATATTTTCAGCTCCAAAATCCTT
66 AGATGGTTTTTATGTCCATAATTGTTCAGAAACAAAATTTTGATATTTTCAGCTCCAAAATCCTT
* * * * * *
31599 CATAAGTTATACTTAACACTGT-AAAAATTAAAATCAGTGCAGGTTATCATGCTTCTGTGTTTGA
131 CATGACTTACACTTAACACTGTGAAAAATTAAAATCAATGTAGGTTATCATGTTTCTGTGTTTGA
* * * *
31663 GCCAGTTTAAAATTATTAATTTTCATTTAAAAACTTTTTAAAACAATATTTCATCCTTTTAAAGC
196 GCGAGTTTAAAATTATTCATTTTCATTTAAAAACTTGTTAAAACAATATTTCATACTTTTAAAGC
** * * * *
31728 TCGACTCCAATAGAAATGGTTTTCAAAGCAAAACATAAAAGTTTCAAAAGCGTTGAACTATGAGT
261 TCGACTCCAGCAGAAATGGTTTTCAAAGCAAAACATAAAAGCTTCAAAAGCGTCGAGCTTTGAGT
* * * * * * *
31793 TTGTGCGTAATGTATAAAAATAAATTAGCACATAGTTTAATCGCAACAAGCGCTAGTAACGATTT
326 TTGTGCGTAATGTATAAAAACAAGTTAGAACACAGTTTAATCGCATCAAGCGCCAATAACGATTT
* * * ** * *
31858 CAAAAATGATATCCAAATATCAATAGCATCTCATAAATTTTTTGGAGCACCCATGAATTCTCTTG
391 CAAAAATGACATCCAAATATCAACAGCATCTCACAAATTTCCTGGAGCACTCATGAATTCTCTTA
31923 AAAATGCATATAA
456 AAAATGCATAT-A
** * * * * * *
31936 TAGAGCAAATTCGCATAAAAAAATTAAAATTGTGCAAATGGTTTTTATATCGCAATATAAAATTG
1 -A-AGCAAATAAGCAT-GAAAAATAAAAATCGTGCAAATGGTTTTTATATCACAATTTGAAATTG
* * * * *
32001 TGCAGATCGTTTTTATGCCCGTAACTT-TTTAGAAACAAAATTTTGAT-TTTTCAACTCCAAAAT
63 TGCAGATGGTTTTTATGTCCATAA-TTGTTCAGAAACAAAATTTTGATATTTTCAGCTCCAAAAT
* *
32064 CCTTAATGACTTACA-TATAACACAGTGAAAAATTAAAA-CAAATGTAGGTTATCA-----C-GT
127 CCTTCATGACTTACACT-TAACACTGTGAAAAATTAAAATC-AATGTAGGTTATCATGTTTCTGT
* * ** * *
32121 -TTT---C-ATGTTTAAAACTATTCATTTTCATTTAGAAACTTCCTAAAATAACATTTCATACTT
190 GTTTGAGCGA-GTTTAAAATTATTCATTTTCATTTAAAAACTTGTTAAAACAATATTTCATACTT
** *
32181 TTATTGCTAGACTCCAGCAGAAATGGTTTT----------C---AAAG---CAAAAG-GTCGAGC
254 TTAAAGCTCGACTCCAGCAGAAATGGTTTTCAAAGCAAAACATAAAAGCTTCAAAAGCGTCGAGC
* * *
32229 TTTGAGTTTGTGCATAATGTAT------AA---A-AACA-AG-TTAATCACATCAAGTGCCAATA
319 TTTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGAACACAGTTTAATCGCATCAAGCGCCAATA
* * * * *
32282 AAGATTTCACAAATGACA-CCAAATATCAATAGCATCCCACAAA-TTCCTTGGAGCACCCATGAA
384 ACGATTTCAAAAATGACATCCAAATATCAACAGCATCTCACAAATTTCC-TGGAGCACTCATGAA
*
32345 TTCTCTTAAAAATGCATCTA
448 TTCTCTTAAAAATGCATATA
*
32365 CAGCAAATAAGCATGAAAAAT
1 AAGCAAATAAGCATGAAAAAT
32386 TAAACCAGCA
Statistics
Matches: 1573, Mismatches: 236, Indels: 130
0.81 0.12 0.07
Matches are distributed among these distances:
426 6 0.00
427 11 0.01
429 3 0.00
430 55 0.03
431 32 0.02
432 2 0.00
433 3 0.00
434 1 0.00
437 2 0.00
443 25 0.02
444 6 0.00
447 4 0.00
450 1 0.00
459 1 0.00
460 72 0.05
463 3 0.00
464 15 0.01
465 438 0.28
466 218 0.14
467 130 0.08
468 57 0.04
469 77 0.05
470 149 0.09
471 163 0.10
472 64 0.04
473 35 0.02
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.34
Consensus pattern (467 bp):
AAGCAAATAAGCATGAAAAATAAAAATCGTGCAAATGGTTTTTATATCACAATTTGAAATTGTGC
AGATGGTTTTTATGTCCATAATTGTTCAGAAACAAAATTTTGATATTTTCAGCTCCAAAATCCTT
CATGACTTACACTTAACACTGTGAAAAATTAAAATCAATGTAGGTTATCATGTTTCTGTGTTTGA
GCGAGTTTAAAATTATTCATTTTCATTTAAAAACTTGTTAAAACAATATTTCATACTTTTAAAGC
TCGACTCCAGCAGAAATGGTTTTCAAAGCAAAACATAAAAGCTTCAAAAGCGTCGAGCTTTGAGT
TTGTGCGTAATGTATAAAAACAAGTTAGAACACAGTTTAATCGCATCAAGCGCCAATAACGATTT
CAAAAATGACATCCAAATATCAACAGCATCTCACAAATTTCCTGGAGCACTCATGAATTCTCTTA
AAAATGCATATA
Found at i:31896 original size:932 final size:939
Alignment explanation
Indices: 30217--32220 Score: 2496
Period size: 932 Copynumber: 2.2 Consensus size: 939
30207 ATTTAACAGT
** * * * *
30217 AGTGAAAAATTAAAAC-AATGCAGATTATCATGTTTTTGTGTTTGAGTGAGTTTAAAATTATTAA
1 AGTGAAAAATTAAAACAAATATAGGTTATCATGTTTCTGTGTTTGAGCGAGTTTAAAATTATTCA
* * * * ** *
30281 TTTTCATTTAAAAA-TTGTTAAAAACAATATTTCATACTTTTAAAGCTCGATTTCAATAGAAATT
66 TTTTCATTTAAAAACTTGCT-AAAACAACATTTCATACTTTTAAAGCTCGACTCCAGCAGAAATG
* * * * *
30345 ATTTTTAAAGCAAAACATAAAAGCTTCAAAAACGTTGAGCTTTGAGTTTGGTGTAATGTATAAAA
130 GTTTTCAAAGCAAAACATAAAAGCTTCAAAAACATCGAGCTTTGAGTTTGGCGTAATGTATAAAA
* * * *
30410 ATAAGTTAGCAAATAGCTAAATCTCATCAAGTGCCAATAATGATTTCAAAAAATGACATCCAAAT
195 ACAAGTTAGCAAACAGCTAAATCGCATCAAGTGCCAATAACGATTTCAAAAAATGACATCCAAAT
** *
30475 AATCAACAGCATCTCACAAATTCCTTGGAGCACTTATGAATTCTTTTAAAAATGCATATAAAGGC
260 AATCAACAGCATCTCACAAATTCCTTAAAGCACTTATGAATTCTTCTAAAAATGCATATAAAGGC
* *
30540 AAATAAGTATGAAAAATCAAAAATCGTGCAAATTGGTTTTTAATCACAATTTGAAATTGTGCATA
325 AAATAAGCATGAAAAATCAAAAATCGTGCAAATTGGTTTTTAATCACAATTTGAAATTGTGCAGA
* ** *
30605 TGGTTTTTATGCTCATAATTGTTTAGAAATGAAATTTTGATATTTTCAGCTCCAAAATCTTTCAT
390 TGGTTTTTATGCTCATAATTGTTCAGAAACAAAATTTTGATATTTTCAGCTCCAAAATCCTTCAT
* ** * * * ** * * *
30670 GACTTACGTTTAATATTGTGAAAAATTAAAATCAATGTAACGTATTATTTTTTTGTTGTTTTAGT
455 AACTTACACTTAACACTGTGAAAAATTAAAATCAATGTAACGTATCATGCTTCTGTTGTTTGAGC
* * * *
30735 GAGTTTAAAACTATTCATTTTCATTTTAAAACTTATTAAAATAATATTTCATACTTTTAAAGCTC
520 CAGTTTAAAACTATTAATTTTCATTTAAAAACTTATTAAAACAATATTTCATACTTTTAAAGCTC
* * * * * * *
30800 GACTCCAGCATAAATGATTTTCAAAGTAAAACGTTAAAACTTCATAAGCGTCGAGCTTTGAATTT
585 GACTCCAACAGAAATGATTTTCAAAGCAAAACGATAAAACTTCAAAAGCGTCGAACTATGAATTT
* * * * * *
30865 GTGCGTAATGTATAAAGCAAGTTAGCACACAATTAATTGTATCAAGCGCTAATAACAATTTCACA
650 GTGCGTAATGTATAAAACAAATTAGCACACAATTAATCGCAACAAGCGCTAATAACAATTTCAAA
*
30930 AATGATATCCAAATATCAATAGCATCTCATAAATTTTTTGGAGCACTCATGAATTCTCTTAAAAA
715 AATGATATCCAAATATCAATAGCATCTCATAAATTTTTTGGAGCACCCATGAATTCTCTTAAAAA
* * *
30995 TGCATCT-A-A-AGCAAATGAGCATGAAAAAGTAAAAATCATGCAAATGGTTTTTATATCACAAT
780 TGCATATAATAGAGCAAATGAGCATAAAAAAATAAAAATCATGCAAATGGTTTTTATATCACAAT
* * *
31057 TTGAAATTGTGCAGATAGTTTTTACGTCCATAA-TTGTTCA-AAAGCGAAAA-TTTGATATTCTC
845 ATAAAATTGTGCAGATAGTTTTTACGCCCATAACTT-TTCAGAAA-C-AAAATTTTGAT-TTCTC
* *
31119 AGCTCCAAAA-CCTTTCATGACTTACACT-TAACAC
906 AACTCCAAAATCC-TTAATGACTTACA-TATAACAC
* *
31153 CGT-AAAAATTTAAATC-AATATAGGTTATCATGTTTCTGTGTTTGAGCGAGTTTAAAATTATTC
1 AGTGAAAAA-TTAAAACAAATATAGGTTATCATGTTTCTGTGTTTGAGCGAGTTTAAAATTATTC
*
31216 ATTTTCATTTAAAAACTTGCTAAAACAACATTTCATACTTTTAAAGTTCGACTCCAGCAGAAATG
65 ATTTTCATTTAAAAACTTGCTAAAACAACATTTCATACTTTTAAAGCTCGACTCCAGCAGAAATG
*
31281 GTTTTCAAAGCAAAACATAAAAGCTTCAAAAGCATCGAGCTTTGAGTTTGTGCGTAATGTATAAA
130 GTTTTCAAAGCAAAACATAAAAGCTTCAAAAACATCGAGCTTTGAGTTTG-GCGTAATGTATAAA
* * * * *
31346 AACAAGTTAGTAACACA-TTTAATCGCATCAAG-GCCAATAACGATTTC-ACAAATGACATTCAA
194 AACAAGTTAGCAA-ACAGCTAAATCGCATCAAGTGCCAATAACGATTTCAAAAAATGACATCCAA
* * * * *
31408 AT-ATCAACAGCGTCTCACAAATTTCC-TAAAGCACTTATGAATTCTTCTAAAAGTGCCTCTAGA
258 ATAATCAACAGCATCTCACAAA-TTCCTTAAAGCACTTATGAATTCTTCTAAAAATGCATATAAA
31471 -GCAAATAAGCATGAAAAAT-AAAAATCGTGCAAA-TGGTTTTTATATCACAATTTGAAATTGTG
322 GGCAAATAAGCATGAAAAATCAAAAATCGTGCAAATTGGTTTTTA-ATCACAATTTGAAATTGTG
* *
31533 GAGATGGTTTTTATG-TCCATAATTGTTCATAAACAAAATTTTGATATTTTCAGCTCCAAAATCC
386 CAGATGGTTTTTATGCT-CATAATTGTTCAGAAACAAAATTTTGATATTTTCAGCTCCAAAATCC
* * * * *
31597 TTCATAAGTTATACTTAACACTGT-AAAAATTAAAATCAGTG-CAGGTTATCATGCTTCTG-TGT
450 TTCATAACTTACACTTAACACTGTGAAAAATTAAAATCAATGTAACG-TATCATGCTTCTGTTGT
* * *
31659 TTGAGCCAGTTTAAAATTATTAATTTTCATTTAAAAACTTTTTAAAACAATATTTCATCCTTTTA
514 TTGAGCCAGTTTAAAACTATTAATTTTCATTTAAAAACTTATTAAAACAATATTTCATACTTTTA
* * * *
31724 AAGCTCGACTCCAATAGAAATGGTTTTCAAAGCAAAAC-ATAAAAGTTTCAAAAGCGTTGAACTA
579 AAGCTCGACTCCAACAGAAATGATTTTCAAAGCAAAACGATAAAA-CTTCAAAAGCGTCGAACTA
* * * * *
31788 TGAGTTTGTGCGTAATGTATAAAAATAAATTAGCACATAGTTTAATCGCAACAAGCGCTAGTAAC
643 TGAATTTGTGCGTAATGTAT-AAAACAAATTAGCACACA-ATTAATCGCAACAAGCGCTAATAAC
*
31853 GATTTCAAAAATGATATCCAAATATCAATAGCATCTCATAAATTTTTTGGAGCACCCATGAATTC
706 AATTTCAAAAATGATATCCAAATATCAATAGCATCTCATAAATTTTTTGGAGCACCCATGAATTC
* ** * **
31918 TCTTGAAAATGCATATAATAGAGCAAATTCGCATAAAAAAATTAAAATTGTGCAAATGGTTTTTA
771 TCTTAAAAATGCATATAATAGAGCAAATGAGCATAAAAAAATAAAAATCATGCAAATGGTTTTTA
* * * * *
31983 TATCGCAATATAAAATTGTGCAGATCGTTTTTATGCCCGTAACTTTTTAGAAACAAAATTTTGAT
836 TATCACAATATAAAATTGTGCAGATAGTTTTTACGCCCATAACTTTTCAGAAACAAAATTTTGAT
*
32048 TTTTCAACTCCAAAATCCTTAATGACTTACATATAACAC
901 TTCTCAACTCCAAAATCCTTAATGACTTACATATAACAC
* *
32087 AGTGAAAAATTAAAACAAATGTAGGTTATCA-----C-GT-TTT---C-ATGTTTAAAACTATTC
1 AGTGAAAAATTAAAACAAATATAGGTTATCATGTTTCTGTGTTTGAGCGA-GTTTAAAATTATTC
* * * ** *
32141 ATTTTCATTTAGAAACTTCCTAAAATAACATTTCATACTTTTATTGCTAGACTCCAGCAGAAATG
65 ATTTTCATTTAAAAACTTGCTAAAACAACATTTCATACTTTTAAAGCTCGACTCCAGCAGAAATG
32206 GTTTTCAAAGCAAAA
130 GTTTTCAAAGCAAAA
32221 GGTCGAGCTT
Statistics
Matches: 921, Mismatches: 125, Indels: 55
0.84 0.11 0.05
Matches are distributed among these distances:
924 1 0.00
925 87 0.09
928 3 0.00
929 7 0.01
930 128 0.14
931 49 0.05
932 201 0.22
933 20 0.02
934 92 0.10
935 126 0.14
936 165 0.18
937 40 0.04
938 2 0.00
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.34
Consensus pattern (939 bp):
AGTGAAAAATTAAAACAAATATAGGTTATCATGTTTCTGTGTTTGAGCGAGTTTAAAATTATTCA
TTTTCATTTAAAAACTTGCTAAAACAACATTTCATACTTTTAAAGCTCGACTCCAGCAGAAATGG
TTTTCAAAGCAAAACATAAAAGCTTCAAAAACATCGAGCTTTGAGTTTGGCGTAATGTATAAAAA
CAAGTTAGCAAACAGCTAAATCGCATCAAGTGCCAATAACGATTTCAAAAAATGACATCCAAATA
ATCAACAGCATCTCACAAATTCCTTAAAGCACTTATGAATTCTTCTAAAAATGCATATAAAGGCA
AATAAGCATGAAAAATCAAAAATCGTGCAAATTGGTTTTTAATCACAATTTGAAATTGTGCAGAT
GGTTTTTATGCTCATAATTGTTCAGAAACAAAATTTTGATATTTTCAGCTCCAAAATCCTTCATA
ACTTACACTTAACACTGTGAAAAATTAAAATCAATGTAACGTATCATGCTTCTGTTGTTTGAGCC
AGTTTAAAACTATTAATTTTCATTTAAAAACTTATTAAAACAATATTTCATACTTTTAAAGCTCG
ACTCCAACAGAAATGATTTTCAAAGCAAAACGATAAAACTTCAAAAGCGTCGAACTATGAATTTG
TGCGTAATGTATAAAACAAATTAGCACACAATTAATCGCAACAAGCGCTAATAACAATTTCAAAA
ATGATATCCAAATATCAATAGCATCTCATAAATTTTTTGGAGCACCCATGAATTCTCTTAAAAAT
GCATATAATAGAGCAAATGAGCATAAAAAAATAAAAATCATGCAAATGGTTTTTATATCACAATA
TAAAATTGTGCAGATAGTTTTTACGCCCATAACTTTTCAGAAACAAAATTTTGATTTCTCAACTC
CAAAATCCTTAATGACTTACATATAACAC
Found at i:35008 original size:450 final size:449
Alignment explanation
Indices: 34148--39499 Score: 5739
Period size: 450 Copynumber: 11.8 Consensus size: 449
34138 TTTCAGCGAG
* *
34148 TTTAAAAACTTGCTAAAACAACATTTCACACTTTTAAAGCTAGACTCCAGCAGAAATGGTTTTCA
1 TTTAAAAACTTGCTAAAACAACATTTCATACTTTTAAAGCTCGACTCCAGCAGAAATGGTTTTCA
* * * * * * *
34213 AAGCAGAACATTGAGGTTTGAGGTTGTGCATAATGTATAAAAACAAGTTAACACACAGTTAATCA
66 AAGCAAAACGTTGAGCTTTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCG
* * ** *
34278 CATCAAGCACCAATAACAATTTCACAAATGACATTGAAATATTAACAGCATCCCACAAATTCCCT
131 CATCAAGCGCCAATAACGATTTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCT
* * *
34343 GGAGCACCCATGAAATCCCCAAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTG
196 GGAGCACCCATGAATTCTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTG
* * *
34408 CAAATGATTTTTATATCACAATTTGAAATTGAGCAGATGGTTTTTAT-CGACATAATTGTTCAGA
261 CAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATGGTTTTTATGC-CCATAATTGTTCAGA
* * * *
34472 AACGAAATTTTGATAATTTCATCTCCAAAATCCTTCATGACATACAGTTAACACCGTGAAAATTT
325 AACGAAATTTTGATATTTTCAGCTCCAAAATCCTTCATGACTTACACTTAACACCGTGAAAATTT
* * *
34537 GAAACCAATGCAGGTTTATCATCTTTCTGTGTTTGAGCGAGTTTAAAACTATTCATTTCCA
390 AAAACCAATGCAGG-TTATCATGTTTATGTGTTTGAGCGAGTTTAAAACTATTCATTTCCA
* * *
34598 TTTAAAAACTTGCTAAATCAACATTTCATACTTTTAAAGCTCGATTCCAGCAGAAATGGTTTTTA
1 TTTAAAAACTTGCTAAAACAACATTTCATACTTTTAAAGCTCGACTCCAGCAGAAATGGTTTTCA
* * *
34663 AAGCAGAACGTTGAGCTTTGAGTTTGTGCGTAATATATAAAAACAAGTTAGCACACAGTGAATCG
66 AAGCAAAACGTTGAGCTTTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCG
* *
34728 CATCAAGCGCCAATAACAATTTCACAAATGACATCCAAATATCAACAGCTTCCCACAAATTCCCT
131 CATCAAGCGCCAATAACGATTTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCT
* * * * * *
34793 AGAGTATCCACGAATTCCCCTAAAAATGCATCTAGAGCAAATAAGCATGAAAAATTAAAACCGTG
196 GGAGCACCCATGAATTCTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTG
* *
34858 CAAATGGTTTTTATATCGCAATTTGAAATTTTGCAGATGGTTTTTATGCCCATAATTGTTCAGAA
261 CAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATGGTTTTTATGCCCATAATTGTTCAGAA
* * * *
34923 ATGAAAATTTTGATATTTTCAGCTCCAAAATCCTTCATGACTTGCACCTAACACCGTGGAAATTT
326 ACG-AAATTTTGATATTTTCAGCTCCAAAATCCTTCATGACTTACACTTAACACCGTGAAAATTT
* * **
34988 AAAACCAATGCAGGTTATCATGTTTATGGGTTTGAGCGAGATTAAAACTATTCATTTATA
390 AAAACCAATGCAGGTTATCATGTTTATGTGTTTGAGCGAGTTTAAAACTATTCATTTCCA
* * * * *
35048 TTTAAAAACTTGCTAAAACATCATTTCTTACTTTTAAAGTTTGACTCCAGCAAAAATGGTTTTCA
1 TTTAAAAACTTGCTAAAACAACATTTCATACTTTTAAAGCTCGACTCCAGCAGAAATGGTTTTCA
* * * * *
35113 AAGCAAAACATAAAAGCTTCAAAAGCGTCGAGCTTTTGTGTTTAGCATAATGTACAAAAACAAGT
66 AAGCAAAAC------G-TT---GAGCTTTGAG---TT-TG--T-GCGTAATGTATAAAAACAAGT
* * *
35178 TAGCACACAGTTAATCGCATCAAGTGCCAAT-ACAGATTTAACAAATGACATCCAAATATCAATA
114 TAGCACACAGTTAATCGCATCAAGCGCCAATAAC-GATTTCACAAATGACATCCAAATATCAACA
* *** * *
35242 GCATCCCAAAAATTTGATGGAGCATCCATGAATTCTCCTAAAAATGCATCTAAAGGAAATAAGCA
178 GCATCCCACAAATTCCCTGGAGCACCCATGAATTCTCCTAAAAATGCATCTAAAGCAAATAAGCA
* * * * *
35307 TGAAAAATAAAAACTAG-GCAAGTGGTTTTTATATAACAATTTGAGATTGTGCAGATGGTTTTTA
243 TGAAAAATTAAAAC-CGTGCAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATGGTTTTTA
*
35371 TGCCCATAATTGTTCAAAAACGAAATTTTGATATTTTCAGCTCCAAAATCCTTCATGACTTACAC
307 TGCCCATAATTGTTCAGAAACGAAATTTTGATATTTTCAGCTCCAAAATCCTTCATGACTTACAC
* * * *
35436 CTAACACTGTGAAAATTTAAAACCAATGCAGGTTATCATGTTTATGTGTTTGAGTGAGATTAAAA
372 TTAACACCGTGAAAATTTAAAACCAATGCAGGTTATCATGTTTATGTGTTTGAGCGAGTTTAAAA
35501 CTATTCATTTCCA
437 CTATTCATTTCCA
** * * ** * *** * *
35514 TTT---AAC-TGCTATTGATATCATGGCACTTACTTTTAAAGCTTGACTTTGGCAAAAATTGTTT
1 TTTAAAAACTTGCTA-AAACAACATTTCA--TACTTTTAAAGCTCGACTCCAGCAGAAATGGTTT
* * *
35575 TCAAAGCAAAACATAAATCTTTGAAAGCGTCAAGCTTTGTGTTTGAG-GATAATGTATAAAAACA
63 TCAAAG-----CA-AAA-CGTT------G---AGCTTTGAGTTTGTGCG-TAATGTATAAAAACA
* * * * *
35639 ACTTAGCACACAGTTAATCGCATCAAGTGCCAATAACAATTTCACAAATTACATCCAAATATCGA
111 AGTTAGCACACAGTTAATCGCATCAAGCGCCAATAACGATTTCACAAATGACATCCAAATATCAA
* * * *
35704 CAACATCCCACAAATTCCCTGGAGCAACCATGAATTCTCCTAAAAATACATCTAAAACAAATAAG
176 CAGCATCCCACAAATTCCCTGGAGCACCCATGAATTCTCCTAAAAATGCATCTAAAGCAAATAAG
* * * * * *
35769 CTTGAAAAATAAAAACCATGCAAATGATATTTTTTATCACAATTTGGAA-----CAGATGGTTTT
241 CATGAAAAATTAAAACCGTGCAAATGGT-TTTTATATCACAATTTGAAATTGTGCAGATGGTTTT
* * * * * **
35829 TATACACATAATTGTTTAGAAACGAAATTTTGATATTTTCATCTCCAAAATCCTTCATGGCAAAC
305 TATGCCCATAATTGTTCAGAAACGAAATTTTGATATTTTCAGCTCCAAAATCCTTCATGACTTAC
* * * * *
35894 ACTTAACACCGTGAAAAATT-AAACTAATGCATGTTATCATGTTTTTGTGTTTCAGCGAGTTTAA
370 ACTTAACACCGTGAAAATTTAAAACCAATGCAGGTTATCATGTTTATGTGTTTGAGCGAGTTTAA
35958 AACTATTCATTTCCA
435 AACTATTCATTTCCA
* * * *
35973 TTTTAAAACTTGCTAAAACAACATTTCATACTTTTAAAGTTCGACTCTAGCA-AAACGGTTTTCA
1 TTTAAAAACTTGCTAAAACAACATTTCATACTTTTAAAGCTCGACTCCAGCAGAAATGGTTTTCA
* ** * * * * *
36037 AAGCAAAACATAAAAGTTTTAAAAGAGTCGAGCTTTGTGAGAGAAATGTAGAAAAACAAGTTAGT
66 AAGCAAAAC------G--TT--GAGCTTTGAG-TTTGT--GCGTAATGTATAAAAACAAGTTAGC
** * * * * *
36102 ACACAGTTAATCATATCGAGTGCCAATAACGATTTCATAAAAGACATCCAAATATGAACAGCATC
118 ACACAGTTAATCGCATCAAGCGCCAATAACGATTTCACAAATGACATCCAAATATCAACAGCATC
* * *
36167 CCACAAATTCCATGGAGCACCTATGAATTCTCCTAAAAATG-ATCTAAAGCAAAAAAGCATGAAA
183 CCACAAATTCCCTGGAGCACCCATGAATTCTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAA
* *
36231 AATTAAAACCGTGCAAATGGTTTTTATTTCACAATTTGAAATTGAGCAGATGGTTTTTATGCCCA
248 AATTAAAACCGTGCAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATGGTTTTTATGCCCA
*
36296 TAATTGTTCAGAAACGAAATTTTGATATTTTCAGCTCCAAAATCCATCATGACTTACAAC-TAAC
313 TAATTGTTCAGAAACGAAATTTTGATATTTTCAGCTCCAAAATCCTTCATGACTTAC-ACTTAAC
* * * * *
36360 A-C-TGAAAATTCAAAACTAATGCAGGTTATCATGTTTAAGTATTTGAGCGAGATTAAAACTATT
377 ACCGTGAAAATTTAAAACCAATGCAGGTTATCATGTTTATGTGTTTGAGCGAGTTTAAAACTATT
36423 CATTTCCA
442 CATTTCCA
* * * * * *
36431 TTTGAAAACTTGCTAAAACAACATTT-TTACTTTTAAAGTTCAACTCCAGGAAAAATGGTTTTCA
1 TTTAAAAACTTGCTAAAACAACATTTCATACTTTTAAAGCTCGACTCCAGCAGAAATGGTTTTCA
* * **
36495 AAACAAAACATAAAAGCTTCAAAAGTGTCGAGATTTGTGTAAGAGCGTAATGTATAAAAACAAGT
66 AAGCAAAACGT-TGAGC-T------T-T-GAG--TT-TGT----GCGTAATGTATAAAAACAAGT
* * *
36560 TAGCACATAGTTAATCGCATCAAGTGCCAATAACGATTTCACAAATGACATCCAAA-ACTCAATA
114 TAGCACACAGTTAATCGCATCAAGCGCCAATAACGATTTCACAAATGACATCCAAATA-TCAACA
** * * *
36624 GCATCCCACAAATTTACAGGAGCACCCATGAATTCTCCTAAAAATGCATCCAAAGGAAATAAGCA
178 GCATCCCACAAATTCCCTGGAGCACCCATGAATTCTCCTAAAAATGCATCTAAAGCAAATAAGCA
* * * * *
36689 TGAAAAATAAAAACCATGCAAATGGTTTTTATATCACATTTTCAAATTGTGCAGATAGTTTTTAT
243 TGAAAAATTAAAACCGTGCAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATGGTTTTTAT
* * * *
36754 GCCCATAATTGTTTAGAAACGAAATTTTGATATTTTCACCTCCAAAACCCTTCATGACTTACACC
308 GCCCATAATTGTTCAGAAACGAAATTTTGATATTTTCAGCTCCAAAATCCTTCATGACTTACACT
* * * * * *
36819 TAACACCCTGAAAATTTAAAACTAATGCATGTTACCATGTTTATGTGTTTGAGAGAGATTAAAAC
373 TAACACCGTGAAAATTTAAAACCAATGCAGGTTATCATGTTTATGTGTTTGAGCGAGTTTAAAAC
*
36884 TATTAATTTCCA
438 TATTCATTTCCA
* *
36896 TTTAAAAACTTGCTAAAACAGCATTTCTTACTTTTAAAGCTCGACTCCAGCAGAAATGGTTTTCA
1 TTTAAAAACTTGCTAAAACAACATTTCATACTTTTAAAGCTCGACTCCAGCAGAAATGGTTTTCA
** *
36961 AAGCAAAACGTCAAGCTTTGAGTTTGTGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCG
66 AAGCAAAACGTTGAGCTTTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCG
* * * *
37026 CATCAAGCGCCAACAACGATTTCACAAATGACATCCAAATATCAATAGCATCCAACAAATTCTCT
131 CATCAAGCGCCAATAACGATTTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCT
* * * * *
37091 GGACCACCCACGAATTCTCGTAAAAATGCAACTAAAGCAAATAAGCATGAAAAATTAAAACCATG
196 GGAGCACCCATGAATTCTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTG
* ** * * * *
37156 CAAGTGGTTTTTATATCACAATTTGATTTTGTGCAGATGGTTTTTTTTTCCCACAATTGTTTAGA
261 CAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATGG-TTTTTATGCCCATAATTGTTCAGA
* * * * ** **
37221 AATGAAATTTTGATATTTTCAGCTCCAAAATCTTTCACGACTTACACTTAACGCAATGAAAAAAT
325 AACGAAATTTTGATATTTTCAGCTCCAAAATCCTTCATGACTTACACTTAACACCGTGAAAATTT
* * * * * *
37286 AAAACCAATGCAGCTTATAATGTTTTTGTGTTTGAGCGTGTTTAAAATTATTAATTTCCA
390 AAAACCAATGCAGGTTATCATGTTTATGTGTTTGAGCGAGTTTAAAACTATTCATTTCCA
* * * * * *
37346 TTTAAAAACTTGCTAAAACAACATTTTATTCTTTTAAAGTTTGACTCAAGCAGAAATGGATTTCA
1 TTTAAAAACTTGCTAAAACAACATTTCATACTTTTAAAGCTCGACTCCAGCAGAAATGGTTTTCA
* * * * *
37411 AAACAAAACATAAAAGTTTCAAAAGAGAAAAGCTTTGAATTTCTGCATAATGTATAAAAGCAAGT
66 AAGCAAAAC------G-TT-------G---AGCTTTGAGTTTGTGCGTAATGTATAAAAACAAGT
* * *
37476 TAGCGCACAGTTAATCACATCAAGTGCCAATAACGA-TT------T--CA---AAA-AT-----G
114 TAGCACACAGTTAATCGCATCAAGCGCCAATAACGATTTCACAAATGACATCCAAATATCAACAG
* * *
37523 CATCCCACAAATTCACTGAAGCACCCATGAATTCTCCTAAAAATGCATCTAAATCAAATAAGCAT
179 CATCCCACAAATTCCCTGGAGCACCCATGAATTCTCCTAAAAATGCATCTAAAGCAAATAAGCAT
** * * *
37588 GAAAAATTAAAACCGTGCAAACAGTTTTTATACCACAATTTGAAA-T-T--ATATGGTTTTTATA
244 GAAAAATTAAAACCGTGCAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATGGTTTTTATG
* * * *
37649 CCCAAAATTGTTCAGAAA-GAAAATTTTGATATTGTCAACTCCAAAATCCCTCATGACTTACACT
309 CCCATAATTGTTCAGAAACG-AAATTTTGATATTTTCAGCTCCAAAATCCTTCATGACTTACACT
* * * * *
37713 TAACACCGTGAAAAATTAGAACAAATACAGGTTATCATG-TTATTGTGTTTGAGCAAGTTTAAAA
373 TAACACCGTGAAAATTTAAAACCAATGCAGGTTATCATGTTTA-TGTGTTTGAGCGAGTTTAAAA
37777 CTATTCATTTCCA
437 CTATTCATTTCCA
* * * *
37790 TTTAAAAACTTCCTAAAACAACATTTCATACTTTTAAAGTTCGACTCCAGTAAAAATGGTTTTCA
1 TTTAAAAACTTGCTAAAACAACATTTCATACTTTTAAAGCTCGACTCCAGCAGAAATGGTTTTCA
* * * * ** *
37855 AATCAAAACATAAAAGCTTCAAAAGCATCGAGCTTTGTGTTTGTGCATAATGTATAGAAGGAAAT
66 AAGCAAAAC------G--T--------T-GAGCTTTGAGTTTGTGCGTAATGTATAAAAACAAGT
* * * * * *
37920 TAGCACACAGTTAATCGCATCAAGCACCCATAACTATTTGACAAATGATATCCAAATATCAACGG
114 TAGCACACAGTTAATCGCATCAAGCGCCAATAACGATTTCACAAATGACATCCAAATATCAACAG
* * * * **
37985 CATCCCATAAATTCCCTGGTGCACTCATGAATTCTCCCAAAAATGCATCTAAAGCAAA-AAAAAT
179 CATCCCACAAATTCCCTGGAGCACCCATGAATTCTCCTAAAAATGCATCTAAAGCAAATAAGCAT
*
38049 GAAAAATTAAAACCGTGCAAATGGTTTTTATATCACAATTTGAAATTTTGCAGATGGTTTTTATG
244 GAAAAATTAAAACCGTGCAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATGGTTTTTATG
38114 CCCATAATTGTTCAGAAACGAAATTTTGATATTTTCAGCTCCAAAATCCTTCATGACTTACACTT
309 CCCATAATTGTTCAGAAACGAAATTTTGATATTTTCAGCTCCAAAATCCTTCATGACTTACACTT
* * *
38179 AGCACCATGAAAATTTAAAACCAATAG-AGGTTATCATGTTTCTGTGTTTGAGCGAGTTTAAAAC
374 AACACCGTGAAAATTTAAAACCAAT-GCAGGTTATCATGTTTATGTGTTTGAGCGAGTTTAAAAC
*
38243 TATTCATTTTCA
438 TATTCATTTCCA
* * * * * * *
38255 TTTAAAAACTTGCTAAAAACACCATTTTCGTACTTTTATAGCTTGACTCCAGCACAAATCGTTGT
1 TTTAAAAACTTGCT-AAAACAACA-TTTCATACTTTTAAAGCTCGACTCCAGCAGAAATGGTTTT
* * * * * * *
38320 CAAGGCAAAACGTCGAGCTTTGAGTCTGTGCGTAATGTATAAAAACAGGTTCGCACATAATTAAT
64 CAAAGCAAAACGTTGAGCTTTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAAT
* * ** * * *
38385 CGCCTCAAGCACCAATAGTGATTTCACCAATGACATCCAAATATCAATAGTATCCCACAAATTCC
129 CGCATCAAGCGCCAATAACGATTTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCC
* * * * * * * *
38450 CTAGAGCACCTACGAATTCTCATATAAATGCATCTAAAGCAAATATGAATAAAAAATTAAAACCG
194 CTGGAGCACCCATGAATTCTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCG
* *
38515 TGCAAATGGTTTTTATATCACAATTTGAAATTGCGCAGAAGGTTTTTATG-CCATAATTGTTCAG
259 TGCAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATGGTTTTTATGCCCATAATTGTTCAG
* * * *
38579 AAACGAAA-TTTGATATTTTCACCTCCAAAATCCTTCATGAC-T--A-TTTACACTGTCAAGAA-
324 AAACGAAATTTTGATATTTTCAGCTCCAAAATCCTTCATGACTTACACTTAACACCGTGAA-AAT
* * * *
38638 TTAAAAACAATGCAGGTTATTATGTTTCTGTGTTTGAGCAAGTTTAAAACTATTCATTTCCA
388 TTAAAACCAATGCAGGTTATCATGTTTATGTGTTTGAGCGAGTTTAAAACTATTCATTTCCA
* * * * *
38700 CTTTAAAAACTCGCCAAAACAACATTTCATACTTTTAAAGCTCAACTCAAGCAGAGATGGTTTTC
1 -TTTAAAAACTTGCTAAAACAACATTTCATACTTTTAAAGCTCGACTCCAGCAGAAATGGTTTTC
* *
38765 AAAGCAAAACGTCGAGCTTTGAGTTTGTGCGTATTGTATAAAAACAAGTTAGCACACAGTTAATC
65 AAAGCAAAACGTTGAGCTTTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATC
* * * *
38830 GTATCAAGCGTCAATAACGATTTCACAAATGACATCCAAATATCAACAGCTTCCCACAAATTCTC
130 GCATCAAGCGCCAATAACGATTTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCCC
* *
38895 TGGAGCCCCCATGAATTCTCCTAAAAATGCATCTAAAGAAAATAAGCATGAAAAATTAAAACCGT
195 TGGAGCACCCATGAATTCTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGT
* * ** *
38960 GCAAATTGTTTTTATATCACAATTTGAAATTGTGCAAATCATTTTTATGCCGATAATTGTTCAGA
260 GCAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATGGTTTTTATGCCCATAATTGTTCAGA
* * * * * *
39025 AATGAAATTTTGATATTTTCAGCACCAAAATCCTTCATGACATGCACCTAACA-C-TGAAAAATT
325 AACGAAATTTTGATATTTTCAGCTCCAAAATCCTTCATGACTTACACTTAACACCGTGAAAATTT
* * * * *
39088 AAAACCAATGCAAGTTATCATTTTTCTGTGTTTGAGCAAGTTTAAAACTACT-ATTTCCA
390 AAAACCAATGCAGGTTATCATGTTTATGTGTTTGAGCGAGTTTAAAACTATTCATTTCCA
* *
39147 TTTAAAAACTTGCTAAAACAACATTCCATACTTTTAAAGCTCGACTCCAACAGAAAT-GTTTCCA
1 TTTAAAAACTTGCTAAAACAACATTTCATACTTTTAAAGCTCGACTCCAGCAGAAATGGTTT---
* * *
39211 AAGCAAAACATAAAAGCTTCAAAAGCGTTGAGCTTTGAGTTTGAGCGTAATGTATAAAAACATGT
63 ----------TCAAAG---CAAAA-CGTTGAGCTTTGAGTTTGTGCGTAATGTATAAAAACAAGT
* * * * * * *
39276 TGGCAGACAGTTAATCGCCTGGAA-CGCCAATAATGATTTCACAAATAATATCCAAATATCAACA
114 TAGCACACAGTTAATCGCAT-CAAGCGCCAATAACGATTTCACAAATGACATCCAAATATCAACA
* * * *
39340 -CTATCCCACAAAGTCCTTGGAGCACCCATGAATTCTCCTAAAAATGCATCTAAAGCAAAAAAGA
178 GC-ATCCCACAAATTCCCTGGAGCACCCATGAATTCTCCTAAAAATGCATCTAAAGCAAATAAGC
* *
39404 ATGAAAAATTAAAACTGTGCAAATGGTTTTTATATCAGAATTTGAAATTGTGCAGATGGTTTTTA
242 ATGAAAAATTAAAACCGTGCAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATGGTTTTTA
** *
39469 TGAACGTAATTGTTCAGAAACGAAATTTTGA
307 TGCCCATAATTGTTCAGAAACGAAATTTTGA
39500 AAAAGCTTCA
Statistics
Matches: 4140, Mismatches: 590, Indels: 332
0.82 0.12 0.07
Matches are distributed among these distances:
443 3 0.00
444 495 0.12
445 105 0.03
446 96 0.02
447 12 0.00
448 54 0.01
449 317 0.08
450 746 0.18
451 134 0.03
452 1 0.00
453 13 0.00
454 27 0.01
455 41 0.01
456 120 0.03
457 35 0.01
458 109 0.03
459 145 0.04
460 120 0.03
461 54 0.01
462 411 0.10
463 156 0.04
464 153 0.04
465 292 0.07
466 176 0.04
467 310 0.07
468 3 0.00
470 2 0.00
471 9 0.00
472 1 0.00
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.30
Consensus pattern (449 bp):
TTTAAAAACTTGCTAAAACAACATTTCATACTTTTAAAGCTCGACTCCAGCAGAAATGGTTTTCA
AAGCAAAACGTTGAGCTTTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCG
CATCAAGCGCCAATAACGATTTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCT
GGAGCACCCATGAATTCTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTG
CAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATGGTTTTTATGCCCATAATTGTTCAGAA
ACGAAATTTTGATATTTTCAGCTCCAAAATCCTTCATGACTTACACTTAACACCGTGAAAATTTA
AAACCAATGCAGGTTATCATGTTTATGTGTTTGAGCGAGTTTAAAACTATTCATTTCCA
Found at i:37836 original size:894 final size:896
Alignment explanation
Indices: 32456--39499 Score: 6523
Period size: 909 Copynumber: 7.8 Consensus size: 896
32446 TGTTTGAGTG
* * *
32456 TAATATATAAAAACAAGTTAGCACACAATTAATCGCATCAAGCGCCAAATAACAATTTCACAAAT
1 TAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCC-AATAACGATTTCACAAAT
* * *
32521 GACATCCAAATATCAACAGCATCCCACAAATTCCCTAGAGCACCCATGAATTCTCCTAAATATGC
65 GACATCCAAATATCAACAGCATCCCACAAATTCTCTGGAGCACCCATGAATTCTCCTAAAAATGC
* *
32586 ATCTAAAGCAAATAAGCATGAAAAATTAAAACTGTGCAAATGATTTTTATATCACAATTTGAAAT
130 ATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATATCACAATTTGAAAT
* * *** *
32651 TGAGCAAATGGTTTTTATAAACATAATTGTTCAGAAACGAAATTTTGATATTTTCATCTCCAAAA
195 TGTGCAGATGGTTTTTATGCCCATAATTGTTCAGAAACGAAATTTTGATATTTTCAGCTCCAAAA
* * * * * *
32716 TCCTTCATGACATACACTTAACACCATGTAAATTTAAAACCAATGCAGGTTATCATCTTTATGTG
260 TCCTTCATGACTTACACCTAAC-CAATGAAAAATTAAAACCAATGCAGGTTATCATGTTTATGTG
* * * * **
32781 TTTGAGCGAGTTTAGAACTATTCAGTTCCATTTAGAAACTTGCTAAAACAACATTTCATACGCTT
324 TTTGAGCGAGTTTAAAACTATTCATTTCCATTTAAAAACTTGCTAAAACAACATTTTATACTTTT
* * *
32846 AAAGCTTGACTCCAA-CAGAAATGGTTTTCAAAG-----C-T----G----AACA--TCGAGCTT
389 AAAGCTTGACT-CAAGCAAAAATGG-TTTCAAAGCAAAACATAAAAGCTTCAAAAGGTCAAGCTT
* * * * *
32894 TGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACATAGTTAATCGCATCAAGCGCCAATAACA
452 TGAGTTTGAGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGTGCCAATAACG
* * * * *
32959 ATTTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCT-AGAGCACACATTAATTT
517 A-TT-----AT----TACAAA-A-CAATAGCATCCCACAAATTCCCTGA-AGCACCCATGAATTC
* * * * *
33023 TCCTAAAAAGGAATCTAAAGCAAA-AAGGCGTGGAAAATTAAAACCGTGTAAATGGTTTTTATAT
569 TCCTAAAAATGCATCTAAAGCAAATAA-GCATGAAAAATTAAAACCGTGCAAATGGTTTTTATAT
* * * *
33087 CACAATTTGAAATTGTGCAGATGATTTTTATTCCCAAAATTGTTCA-AAAAGAAAATTTTGATAT
633 CACAATTTGAAA-T-T-CAGATGGTTTTTATACCCATAATTGTTCAGAAACG-AAATTTTGATAT
* * * * * * * *
33151 TTTCAACTCTAAAATCCCTCAGGACTTACACTTAACACTGTGAAAATTTAAAACCAATGCAGGTC
694 TTTCACCTCCAAAATCCTTCATGACTTACACTTAACACCGTGAAAAATT-AAACAAATGCAGGTT
* * *
33216 GTCATGTTTATGTGTTTGAGCGAGATTAAAA-TGATTCATTTCCATTTAAAAACTTGCTAAAACA
758 ATCATGTTTATGTGTTTGAGCAAGTTTAAAACT-ATTCATTTCCATTTAAAAACTTGCTAAAACA
** * * *
33280 ACATTTGTTACTTTTAAAGCTT-GACTCCAGCAGAAATGGTTTTCAAAGCAATACTAATACTTCG
822 ACATTTCATACTTTTAAAG-TTCGACTCCAGCAAAAATGGTTTTCAAAGC---A--AA-ACGTCA
**
33344 AGCTTTGAGTTTGTGTG
880 AGCTTTGAGTTTGTGCA
* * * *
33361 TAATGTATAAAAAAAAAGTTAGCACACAGTTAATCACATCAAGTGCGAATAACGATTTCACAAAT
1 TAATGTAT-AAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCAATAACGATTTCACAAAT
* * * * * * * *
33426 GACATCCAAATATCAACAGAATCACACAAATTCCCTTGAACAACCATGAATTCCCCAAAAAATGC
65 GACATCCAAATATCAACAGCATCCCACAAATTCTCTGGAGCACCCATGAATTCTCCTAAAAATGC
** * * * *
33491 ATAGAAAGCAAATAAGCATAAAAAATTAAAACTGTGCAAATGATTTTTATATCACAATTTGAGAT
130 ATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATATCACAATTTGAAAT
** * *
33556 AT-TGCA-ACAAGTTTTTATGCCCATAACTGTTCAGAAACGAAATTTTCATATTTTCAGCTCCAA
195 -TGTGCAGA-TGGTTTTTATGCCCATAATTGTTCAGAAACGAAATTTTGATATTTTCAGCTCCAA
* * *
33619 AATCCTTCATGACTTACACTTAACAACACTGCTGAAAATTTAAAACCAATGCAGGTTATCATGTT
258 AATCCTTCATGACTTACACCTAAC--CA---ATGAAAAATTAAAACCAATGCAGGTTATCATGTT
* * * *
33684 TATGTGTTTGAGTGAGTTTAAAACTATTCATTTTCATTTAAAAACTTTCTAAAACAACACTTCT-
318 TATGTGTTTGAGCGAGTTTAAAACTATTCATTTCCATTTAAAAACTTGCTAAAACAACA-TTTTA
* * * *
33748 TGCTTTTAAAGCTTAACTCCAGCATAAATGGTTTTCAAAGC-AAA-AT----G-TT------G--
382 TACTTTTAAAGCTTGACTCAAGCAAAAATGG-TTTCAAAGCAAAACATAAAAGCTTCAAAAGGTC
* * * * * *
33798 -AGCTTTCAATTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATAGCATCAAGCGCCA
446 AAGCTTTGAGTTTGAGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGTGCCA
* * * * * * *
33862 AAAACGATTTCACAAATGACATCCAAATATCAACAGCATCCCTCAAATTCCCTGGAGCACTCGTG
511 ATAACGA-TT-----AT----TACAAA-A-CAATAGCATCCCACAAATTCCCTGAAGCACCCATG
* * * * * * *
33927 AATT-TGCCTAACAATGCCTCGAAAGCAAAAAAGCAAG-AAAATTAGAACCATGCAAATGGTTTT
564 AATTCT-CCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTT
* * * *
33990 TATATCA-AATTTTGAAATTGTGCATATGGTTTTTATGCCCATAGTTGTTTAGAAACGAAATTTT
628 TATATCACAA-TTTGAAA-T-T-CAGATGGTTTTTATACCCATAATTGTTCAGAAACGAAATTTT
* * * *
34054 GATATTTTCAGCC-CCAAAATCCTTCATGAATTACACCTAACACTGT-AAAAATTTAAATGC-AC
689 GATATTTTCA-CCTCCAAAATCCTTCATGACTTACACTTAACACCGTGAAAAA-TTAAA--CAAA
* * *
34116 TGCAGGTTATCATGTTTCTGTGTTT---C-AG-------C----GA-----GTTTAAAAACTTGC
750 TGCAGGTTATCATGTTTATGTGTTTGAGCAAGTTTAAAACTATTCATTTCCATTTAAAAACTTGC
* * * * * * **
34161 TAAAACAACATTTCACACTTTTAAAGCTAGACTCCAGCAGAAATGGTTTTCAAAGCAGAACATTG
815 TAAAACAACATTTCATACTTTTAAAGTTCGACTCCAGCAAAAATGGTTTTCAAAGCAAAACGTCA
* *
34226 AGGTTTGAGGTTGTGCA
880 AGCTTTGAGTTTGTGCA
* * * *
34243 TAATGTATAAAAACAAGTTAACACACAGTTAATCACATCAAGCACCAATAACAATTTCACAAATG
1 TAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCAATAACGATTTCACAAATG
** * * * * *
34308 ACATTGAAATATTAACAGCATCCCACAAATTCCCTGGAGCACCCATGAAATCCCCAAAAAATGCA
66 ACATCCAAATATCAACAGCATCCCACAAATTCTCTGGAGCACCCATGAATTCTCCTAAAAATGCA
*
34373 TCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGATTTTTATATCACAATTTGAAATT
131 TCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATATCACAATTTGAAATT
* * * *
34438 GAGCAGATGGTTTTTAT-CGACATAATTGTTCAGAAACGAAATTTTGATAATTTCATCTCCAAAA
196 GTGCAGATGGTTTTTATGC-CCATAATTGTTCAGAAACGAAATTTTGATATTTTCAGCTCCAAAA
* ** ** * * * *
34502 TCCTTCATGACATACAGTTAACACCGTGAAAATTTGAAACCAATGCAGGTTTATCATCTTTCTGT
260 TCCTTCATGACTTACACCTAAC-CAATGAAAAATTAAAACCAATGCAGG-TTATCATGTTTATGT
* *
34567 GTTTGAGCGAGTTTAAAACTATTCATTTCCATTTAAAAACTTGCTAAATCAACATTTCATACTTT
323 GTTTGAGCGAGTTTAAAACTATTCATTTCCATTTAAAAACTTGCTAAAACAACATTTTATACTTT
* * * * * *
34632 TAAAGCTCGATTCCAGCAGAAATGGTTTTTAAAGCAGAAC------G-TT------G---AGCTT
388 TAAAGCTTGACTCAAGCAAAAATGG-TTTCAAAGCAAAACATAAAAGCTTCAAAAGGTCAAGCTT
* * * * * *
34681 TGAGTTTGTGCGTAATATATAAAAACAAGTTAGCACACAGTGAATCGCATCAAGCGCCAATAACA
452 TGAGTTTGAGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGTGCCAATAACG
* * * * * *
34746 ATTTCACAAATGACATCCAAATATCAACAGCTTCCCACAAATTCCCT-AGAGTATCCACGAATTC
517 A-TT-----AT----TACAAA-A-CAATAGCATCCCACAAATTCCCTGA-AGCACCCATGAATTC
* *
34810 CCCTAAAAATGCATCTAGAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATATC
569 TCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATATC
* * *
34875 GCAATTTGAAATTTTGCAGATGGTTTTTATGCCCATAATTGTTCAGAAATGAAAATTTTGATATT
634 ACAATTTGAAA--TT-CAGATGGTTTTTATACCCATAATTGTTCAGAAACG-AAATTTTGATATT
* * * * * *
34940 TTCAGCTCCAAAATCCTTCATGACTTGCACCTAACACCGTGGAAATTTAAAACCAATGCAGGTTA
695 TTCACCTCCAAAATCCTTCATGACTTACACTTAACACCGTGAAAAATT-AAACAAATGCAGGTTA
* * * ** *
35005 TCATGTTTATGGGTTTGAGCGAGATTAAAACTATTCATTTATATTTAAAAACTTGCTAAAACATC
759 TCATGTTTATGTGTTTGAGCAAGTTTAAAACTATTCATTTCCATTTAAAAACTTGCTAAAACAAC
* *
35070 ATTTCTTACTTTTAAAGTTTGACTCCAGCAAAAATGGTTTTCAAAGCAAAACATAAAAGCTTCAA
824 ATTTCATACTTTTAAAGTTCGACTCCAGCAAAAATGGTTTTCAAAGCAAAAC------G--TC--
* *
35135 AAGCGTCGAGCTTTTGTGTTTAGCA
879 AAGCTTTGAG---TT-TG--T-GCA
* * *
35160 TAATGTACAAAAACAAGTTAGCACACAGTTAATCGCATCAAGTGCCAAT-ACAGATTTAACAAAT
1 TAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCAATAAC-GATTTCACAAAT
* * * *
35224 GACATCCAAATATCAATAGCATCCCAAAAATT-TGATGGAGCATCCATGAATTCTCCTAAAAATG
65 GACATCCAAATATCAACAGCATCCCACAAATTCT-CTGGAGCACCCATGAATTCTCCTAAAAATG
* * * * * *
35288 CATCTAAAGGAAATAAGCATGAAAAATAAAAACTAG-GCAAGTGGTTTTTATATAACAATTTGAG
129 CATCTAAAGCAAATAAGCATGAAAAATTAAAAC-CGTGCAAATGGTTTTTATATCACAATTTGAA
*
35352 ATTGTGCAGATGGTTTTTATGCCCATAATTGTTCAAAAACGAAATTTTGATATTTTCAGCTCCAA
193 ATTGTGCAGATGGTTTTTATGCCCATAATTGTTCAGAAACGAAATTTTGATATTTTCAGCTCCAA
** *
35417 AATCCTTCATGACTTACACCTAACACTGTGAAAATTTAAAACCAATGCAGGTTATCATGTTTATG
258 AATCCTTCATGACTTACACCTAAC-CAATGAAAAATTAAAACCAATGCAGGTTATCATGTTTATG
* * ** * * ***
35482 TGTTTGAGTGAGATTAAAACTATTCATTTCCATTT---AAC-TGCTATTGATATCATGGCACTTA
322 TGTTTGAGCGAGTTTAAAACTATTCATTTCCATTTAAAAACTTGCTA-AAACAACATTTTA--TA
*** * * **
35543 CTTTTAAAGCTTGACTTTGGCAAAAATTGTTTTCAAAGCAAAACAT-AAATCTTTGAAAGCGTCA
384 CTTTTAAAGCTTGACTCAAGCAAAAA-TGGTTTCAAAGCAAAACATAAAAGCTTCAAAAG-GTCA
* * *
35607 AGCTTTGTGTTTGAGGATAATGTATAAAAACAACTTAGCACACAGTTAATCGCATCAAGTGCCAA
447 AGCTTTGAGTTTGAGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGTGCCAA
* * * *
35672 TAACAATT-TCACAAATTACATCCAAATATCGACAACATCCCACAAATTCCCTGGAGCAACCATG
512 TAACGATTATTAC-AA--A-A--C-AATA--G----CATCCCACAAATTCCCTGAAGCACCCATG
* * * * * *
35736 AATTCTCCTAAAAATACATCTAAAACAAATAAGCTTGAAAAATAAAAACCATGCAAATGATATTT
564 AATTCTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGT-TTT
* * * *
35801 TTTATCACAATTTGGAA--CAGATGGTTTTTATACACATAATTGTTTAGAAACGAAATTTTGATA
628 TATATCACAATTTGAAATTCAGATGGTTTTTATACCCATAATTGTTCAGAAACGAAATTTTGATA
* * ** * *
35864 TTTTCATCTCCAAAATCCTTCATGGCAAACACTTAACACCGTGAAAAATTAAACTAATGCATGTT
693 TTTTCACCTCCAAAATCCTTCATGACTTACACTTAACACCGTGAAAAATTAAACAAATGCAGGTT
* * * *
35929 ATCATGTTTTTGTGTTTCAGCGAGTTTAAAACTATTCATTTCCATTTTAAAACTTGCTAAAACAA
758 ATCATGTTTATGTGTTTGAGCAAGTTTAAAACTATTCATTTCCATTTAAAAACTTGCTAAAACAA
* * * * *
35994 CATTTCATACTTTTAAAGTTCGACTCTAGC-AAAACGGTTTTCAAAGCAAAACATAAAAGTTTTA
823 CATTTCATACTTTTAAAGTTCGACTCCAGCAAAAATGGTTTTCAAAGCAAAACGT-CAAG-CTT-
*
36058 AAAGAGTCGAGCTTTGTGAGA
885 ------T-GAG-TTTGTG-CA
* * * ** * * * *
36079 GAAATGTAGAAAAACAAGTTAGTACACAGTTAATCATATCGAGTGCCAATAACGATTTCATAAAA
1 -TAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCAATAACGATTTCACAAAT
* *
36144 GACATCCAAATATGAACAGCATCCCACAAATTC-CATGGAGCACCTATGAATTCTCCTAAAAATG
65 GACATCCAAATATCAACAGCATCCCACAAATTCTC-TGGAGCACCCATGAATTCTCCTAAAAATG
* *
36208 -ATCTAAAGCAAAAAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATTTCACAATTTGAAA
129 CATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATATCACAATTTGAAA
*
36272 TTGAGCAGATGGTTTTTATGCCCATAATTGTTCAGAAACGAAATTTTGATATTTTCAGCTCCAAA
194 TTGTGCAGATGGTTTTTATGCCCATAATTGTTCAGAAACGAAATTTTGATATTTTCAGCTCCAAA
* * * * *
36337 ATCCATCATGACTTACAACTAA-CACTG-AAAATTCAAAACTAATGCAGGTTATCATGTTTAAGT
259 ATCCTTCATGACTTACACCTAACCAATGAAAAATT-AAAACCAATGCAGGTTATCATGTTTATGT
* * *
36400 ATTTGAGCGAGATTAAAACTATTCATTTCCATTTGAAAACTTGCTAAAACAACATTTT-TACTTT
323 GTTTGAGCGAGTTTAAAACTATTCATTTCCATTTAAAAACTTGCTAAAACAACATTTTATACTTT
* * * * * *
36464 TAAAG-TTCAACTCCAGGAAAAATGGTTTTCAAAACAAAACATAAAAGCTTCAAAAGTGTCGAGA
388 TAAAGCTT-GACTCAAGCAAAAATGG-TTTCAAAGCAAAACATAAAAGCTTCAAAAG-GTCAAGC
* ** * *
36528 TTTGTGTAAGAGCGTAATGTATAAAAACAAGTTAGCACATAGTTAATCGCATCAAGTGCCAATAA
450 TTTGAGTTTGAGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGTGCCAATAA
* ** * *
36593 CGATTTCACAAATGACATCCAAAACTCAATAGCATCCCACAAATTTACAGGAGCACCCATGAATT
515 CGA-TT-----AT----TACAAAA--CAATAGCATCCCACAAATTCCCTGAAGCACCCATGAATT
* * * *
36658 CTCCTAAAAATGCATCCAAAGGAAATAAGCATGAAAAATAAAAACCATGCAAATGGTTTTTATAT
568 CTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATAT
* * * * *
36723 CACATTTTCAAATTGTGCAGATAGTTTTTATGCCCATAATTGTTTAGAAACGAAATTTTGATATT
633 CACAATTTGAAA-T-T-CAGATGGTTTTTATACCCATAATTGTTCAGAAACGAAATTTTGATATT
* * * * * *
36788 TTCACCTCCAAAACCCTTCATGACTTACACCTAACACCCTGAAAATTTAAAACTAATGCATGTTA
695 TTCACCTCCAAAATCCTTCATGACTTACACTTAACACCGTGAAAAATT-AAACAAATGCAGGTTA
* * * *
36853 CCATGTTTATGTGTTTGAG-AGAGATTAAAACTATTAATTTCCATTTAAAAACTTGCTAAAACAG
759 TCATGTTTATGTGTTTGAGCA-AGTTTAAAACTATTCATTTCCATTTAAAAACTTGCTAAAACAA
* * *
36917 CATTTCTTACTTTTAAAGCTCGACTCCAGCAGAAATGGTTTTCAAAGCAAAACGTCAAGCTTTGA
823 CATTTCATACTTTTAAAGTTCGACTCCAGCAAAAATGGTTTTCAAAGCAAAACGTCAAGCTTTGA
36982 GTTTGTGCA
888 GTTTGTGCA
*
36991 TAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCAACAACGATTTCACAAATG
1 TAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCAATAACGATTTCACAAATG
* * * * *
37056 ACATCCAAATATCAATAGCATCCAACAAATTCTCTGGACCACCCACGAATTCTCGTAAAAATGCA
66 ACATCCAAATATCAACAGCATCCCACAAATTCTCTGGAGCACCCATGAATTCTCCTAAAAATGCA
* * * **
37121 ACTAAAGCAAATAAGCATGAAAAATTAAAACCATGCAAGTGGTTTTTATATCACAATTTGATTTT
131 TCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATATCACAATTTGAAATT
* * * * *
37186 GTGCAGATGGTTTTTTTTTCCCACAATTGTTTAGAAATGAAATTTTGATATTTTCAGCTCCAAAA
196 GTGCAGATGG-TTTTTATGCCCATAATTGTTCAGAAACGAAATTTTGATATTTTCAGCTCCAAAA
* * * * * * *
37251 TCTTTCACGACTTACACTTAACGCAATGAAAAAATAAAACCAATGCAGCTTATAATGTTTTTGTG
260 TCCTTCATGACTTACACCTAAC-CAATGAAAAATTAAAACCAATGCAGGTTATCATGTTTATGTG
* * * *
37316 TTTGAGCGTGTTTAAAATTATTAATTTCCATTTAAAAACTTGCTAAAACAACATTTTATTCTTTT
324 TTTGAGCGAGTTTAAAACTATTCATTTCCATTTAAAAACTTGCTAAAACAACATTTTATACTTTT
* * * * **
37381 AAAGTTTGACTCAAGCAGAAATGGATTTCAAAACAAAACATAAAAGTTTCAAAAGAGAAAAGCTT
389 AAAGCTTGACTCAAGCAAAAATGG-TTTCAAAGCAAAACATAAAAGCTTCAAAAG-GTCAAGCTT
* ** * * *
37446 TGAATTTCTGCATAATGTATAAAAGCAAGTTAGCGCACAGTTAATCACATCAAGTGCCAATAACG
452 TGAGTTTGAGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGTGCCAATAACG
*
37511 A-T-TT-C-AAA-AAT-GCATCCCACAAATTCACTGAAGCACCCATGAATTCTCCTAAAAATGCA
517 ATTATTACAAAACAATAGCATCCCACAAATTCCCTGAAGCACCCATGAATTCTCCTAAAAATGCA
* ** *
37570 TCTAAATCAAATAAGCATGAAAAATTAAAACCGTGCAAACAGTTTTTATACCACAATTTGAAATT
582 TCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATATCACAATTTGAAATT
* * * *
37635 -ATATGGTTTTTATACCCAAAATTGTTCAGAAA-GAAAATTTTGATATTGTCAACTCCAAAATCC
647 CAGATGGTTTTTATACCCATAATTGTTCAGAAACG-AAATTTTGATATTTTCACCTCCAAAATCC
* *
37698 CTCATGACTTACACTTAACACCGTGAAAAATTAGAACAAATACAGGTTATCATG-TTATTGTGTT
711 TTCATGACTTACACTTAACACCGTGAAAAATTA-AACAAATGCAGGTTATCATGTTTA-TGTGTT
*
37762 TGAGCAAGTTTAAAACTATTCATTTCCATTTAAAAACTTCCTAAAACAACATTTCATACTTTTAA
774 TGAGCAAGTTTAAAACTATTCATTTCCATTTAAAAACTTGCTAAAACAACATTTCATACTTTTAA
* *
37827 AGTTCGACTCCAGTAAAAATGGTTTTCAAATCAAAACATAAAAGCTTCAAAAGCATCGAGCTTTG
839 AGTTCGACTCCAGCAAAAATGGTTTTCAAAGCAAAAC------G--T------CA---AGCTTTG
*
37892 TGTTTGTGCA
887 AGTTTGTGCA
* ** * * * * *
37902 TAATGTATAGAAGGAAATTAGCACACAGTTAATCGCATCAAGCACCCATAACTATTTGACAAATG
1 TAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCAATAACGATTTCACAAATG
* * * * * * *
37967 ATATCCAAATATCAACGGCATCCCATAAATTCCCTGGTGCACTCATGAATTCTCCCAAAAATGCA
66 ACATCCAAATATCAACAGCATCCCACAAATTCTCTGGAGCACCCATGAATTCTCCTAAAAATGCA
**
38032 TCTAAAGCAAA-AAAAATGAAAAATTAAAACCGTGCAAATGGTTTTTATATCACAATTTGAAATT
131 TCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATATCACAATTTGAAATT
*
38096 TTGCAGATGGTTTTTATGCCCATAATTGTTCAGAAACGAAATTTTGATATTTTCAGCTCCAAAAT
196 GTGCAGATGGTTTTTATGCCCATAATTGTTCAGAAACGAAATTTTGATATTTTCAGCTCCAAAAT
* * *
38161 CCTTCATGACTTACACTTAGCACC-ATGAAAATTTAAAACCAATAG-AGGTTATCATGTTTCTGT
261 CCTTCATGACTTACACCTA--ACCAATGAAAAATTAAAACCAAT-GCAGGTTATCATGTTTATGT
* * *
38224 GTTTGAGCGAGTTTAAAACTATTCATTTTCATTTAAAAACTTGCTAAAAACACCATTTTCGTACT
323 GTTTGAGCGAGTTTAAAACTATTCATTTCCATTTAAAAACTTGCT-AAAACAACATTTT-ATACT
* * * * *
38289 TTTATAGCTTGACTCCAGCACAAATCGTTGTCAAGGCAAAAC------G--TC-----G---AGC
386 TTTAAAGCTTGACTCAAGCAAAAATGGTT-TCAAAGCAAAACATAAAAGCTTCAAAAGGTCAAGC
* * * * * * * * ** *
38338 TTTGAGTCTGTGCGTAATGTATAAAAACAGGTTCGCACATAATTAATCGCCTCAAGCACCAATAG
450 TTTGAGTTTGAGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGTGCCAATAA
* * * * *
38403 TGATTTCACCAATGACATCCAAATATCAATAGTATCCCACAAATTCCCT-AGAGCACCTACGAAT
515 CGA-TT-----AT----TACAAA-A-CAATAGCATCCCACAAATTCCCTGA-AGCACCCATGAAT
* * * * *
38467 TCTCATATAAATGCATCTAAAGCAAATATGAATAAAAAATTAAAACCGTGCAAATGGTTTTTATA
567 TCTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATA
* *
38532 TCACAATTTGAAATTGCGCAGAAGGTTTTTAT-GCCATAATTGTTCAGAAACGAAA-TTTGATAT
632 TCACAATTTGAAATT---CAGATGGTTTTTATACCCATAATTGTTCAGAAACGAAATTTTGATAT
* * * * *
38595 TTTCACCTCCAAAATCCTTCATGAC-T--A-TTTACACTGTCAAGAATTAAAAACAATGCAGGTT
694 TTTCACCTCCAAAATCCTTCATGACTTACACTTAACACCGTGAAAAATTAAACA-AATGCAGGTT
* * * *
38656 ATTATGTTTCTGTGTTTGAGCAAGTTTAAAACTATTCATTTCCACTTTAAAAACTCGCCAAAACA
758 ATCATGTTTATGTGTTTGAGCAAGTTTAAAACTATTCATTTCCA-TTTAAAAACTTGCTAAAACA
* * * * * *
38721 ACATTTCATACTTTTAAAGCTCAACTCAAGCAGAGATGGTTTTCAAAGCAAAACGTCGAGCTTTG
822 ACATTTCATACTTTTAAAGTTCGACTCCAGCAAAAATGGTTTTCAAAGCAAAACGTCAAGCTTTG
*
38786 AGTTTGTGCG
887 AGTTTGTGCA
* * *
38796 TATTGTATAAAAACAAGTTAGCACACAGTTAATCGTATCAAGCGTCAATAACGATTTCACAAATG
1 TAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCAATAACGATTTCACAAATG
* *
38861 ACATCCAAATATCAACAGCTTCCCACAAATTCTCTGGAGCCCCCATGAATTCTCCTAAAAATGCA
66 ACATCCAAATATCAACAGCATCCCACAAATTCTCTGGAGCACCCATGAATTCTCCTAAAAATGCA
* *
38926 TCTAAAGAAAATAAGCATGAAAAATTAAAACCGTGCAAATTGTTTTTATATCACAATTTGAAATT
131 TCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATATCACAATTTGAAATT
* ** * * *
38991 GTGCAAATCATTTTTATGCCGATAATTGTTCAGAAATGAAATTTTGATATTTTCAGCACCAAAAT
196 GTGCAGATGGTTTTTATGCCCATAATTGTTCAGAAACGAAATTTTGATATTTTCAGCTCCAAAAT
* * * * * *
39056 CCTTCATGACATGCACCTAA-CACTGAAAAATTAAAACCAATGCAAGTTATCATTTTTCTGTGTT
261 CCTTCATGACTTACACCTAACCAATGAAAAATTAAAACCAATGCAGGTTATCATGTTTATGTGTT
* * **
39120 TGAGCAAGTTTAAAACTACT-ATTTCCATTTAAAAACTTGCTAAAACAACATTCCATACTTTTAA
326 TGAGCGAGTTTAAAACTATTCATTTCCATTTAAAAACTTGCTAAAACAACATTTTATACTTTTAA
* * **
39184 AGCTCGACTCCAA-CAGAAAT-GTTTCCAAAGCAAAACATAAAAGCTTCAAAAGCGTTGAGCTTT
391 AGCTTGACT-CAAGCAAAAATGGTTT-CAAAGCAAAACATAAAAGCTTCAAAAG-GTCAAGCTTT
* * * * * * * *
39247 GAGTTTGAGCGTAATGTATAAAAACATGTTGGCAGACAGTTAATCGCCTGGAA-CGCCAATAATG
453 GAGTTTGAGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCGCAT-CAAGTGCCAATAACG
* * * *
39311 ATTTCACAAATAATATCCAAATATCAACA-CTATCCCACAAAGTCCTTGGAGCACCCATGAATTC
517 A-TT-----AT--TA--CAAA-A-CAATAGC-ATCCCACAAATTCCCTGAAGCACCCATGAATTC
* * *
39375 TCCTAAAAATGCATCTAAAGCAAAAAAGAATGAAAAATTAAAACTGTGCAAATGGTTTTTATATC
569 TCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATATC
* * *
39440 AGAATTTGAAATTGTGCAGATGGTTTTTATGA-ACGTAATTGTTCAGAAACGAAATTTTGA
634 ACAATTTGAAA-T-T-CAGATGGTTTTTAT-ACCCATAATTGTTCAGAAACGAAATTTTGA
39500 AAAAGCTTCA
Statistics
Matches: 5155, Mismatches: 728, Indels: 509
0.81 0.11 0.08
Matches are distributed among these distances:
877 24 0.00
878 244 0.05
879 74 0.01
880 81 0.02
881 243 0.05
882 26 0.01
883 2 0.00
884 2 0.00
885 1 0.00
887 1 0.00
888 64 0.01
889 13 0.00
890 22 0.00
891 13 0.00
892 22 0.00
893 61 0.01
894 384 0.07
895 127 0.02
896 2 0.00
897 5 0.00
898 98 0.02
899 3 0.00
900 68 0.01
902 5 0.00
903 5 0.00
904 6 0.00
905 218 0.04
906 225 0.04
907 33 0.01
908 150 0.03
909 407 0.08
910 145 0.03
911 352 0.07
912 173 0.03
913 84 0.02
914 36 0.01
915 137 0.03
916 190 0.04
917 383 0.07
918 160 0.03
919 141 0.03
920 117 0.02
921 13 0.00
922 90 0.02
923 103 0.02
924 51 0.01
925 103 0.02
926 54 0.01
927 32 0.01
928 3 0.00
929 1 0.00
930 2 0.00
931 139 0.03
932 17 0.00
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.30
Consensus pattern (896 bp):
TAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCAATAACGATTTCACAAATG
ACATCCAAATATCAACAGCATCCCACAAATTCTCTGGAGCACCCATGAATTCTCCTAAAAATGCA
TCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATATCACAATTTGAAATT
GTGCAGATGGTTTTTATGCCCATAATTGTTCAGAAACGAAATTTTGATATTTTCAGCTCCAAAAT
CCTTCATGACTTACACCTAACCAATGAAAAATTAAAACCAATGCAGGTTATCATGTTTATGTGTT
TGAGCGAGTTTAAAACTATTCATTTCCATTTAAAAACTTGCTAAAACAACATTTTATACTTTTAA
AGCTTGACTCAAGCAAAAATGGTTTCAAAGCAAAACATAAAAGCTTCAAAAGGTCAAGCTTTGAG
TTTGAGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGTGCCAATAACGATTA
TTACAAAACAATAGCATCCCACAAATTCCCTGAAGCACCCATGAATTCTCCTAAAAATGCATCTA
AAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATATCACAATTTGAAATTCAGA
TGGTTTTTATACCCATAATTGTTCAGAAACGAAATTTTGATATTTTCACCTCCAAAATCCTTCAT
GACTTACACTTAACACCGTGAAAAATTAAACAAATGCAGGTTATCATGTTTATGTGTTTGAGCAA
GTTTAAAACTATTCATTTCCATTTAAAAACTTGCTAAAACAACATTTCATACTTTTAAAGTTCGA
CTCCAGCAAAAATGGTTTTCAAAGCAAAACGTCAAGCTTTGAGTTTGTGCA
Found at i:37931 original size:444 final size:450
Alignment explanation
Indices: 34675--39499 Score: 4356
Period size: 444 Copynumber: 10.5 Consensus size: 450
34665 GCAGAACGTT
* * *
34675 GAGCTTTGAGTTTGTGCGTAATATATAAAAACAAGTTAGCACACAGTGAATCGCATCAAGCGCCA
1 GAGCTTTGAGTTTGTGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCA
* * * * * * *
34740 ATAACAATTTCACAAATGACATCCAAATATCAACAGCTTCCCACAAATTCCCTAGAGTATCCACG
66 ATAACGATTT-----AT---A--CAAA-A-CAATAGCATCCCACAAATTCCCTGGAGCACCCATG
* *
34805 AATTCCCCTAAAAATGCATCTAGAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTT
119 AATTCTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTT
* *
34870 ATATCGCAATTTGAAATTTTGCAGATGGTTTTTATGCCCATAATTGTTCAGAAATGAAAATTTTG
184 ATATCACAATTTGAAA--TTG-AGATGGTTTTTATGCCCATAATTGTTCAGAAACG-AAATTTTG
* * * *
34935 ATATTTTCAGCTCCAAAATCCTTCATGACTTGCACCTAACACCGTGGAAATTTAAAACCAATGCA
245 ATATTTTCAGCTCCAAAATCCTTCATGACTTACACTTAACACCGTGAAAAATTAAAACCAATGCA
* * * * **
35000 GGTTATCATGTTTATGGGTTTGAGCGAGATTAAAACTATTCATTTATATTTAAAAACTTGCTAAA
310 GGTTATCATGTTTCTGTGTTTGAGCAAGTTTAAAACTATTCATTTCCATTTAAAAACTTGCTAAA
* * * *
35065 ACATCATTTCTTACTTTTAAAGTTTGACTCCAGCAAAAATGGTTTTCAAAGCAAAACATAAAAGC
375 ACAACATTTCATACTTTTAAAGTTCGACTCCAGCAGAAATGGTTTTCAAAGCAAAACATAAAAG-
*
35130 TTCAAAAGCGTC
439 TTCAAAAGCATC
* * * *
35142 GAGCTTTTGTGTTT-AGCATAATGTACAAAAACAAGTTAGCACACAGTTAATCGCATCAAGTGCC
1 GAGC-TTTGAGTTTGTGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCC
* *** *
35206 AAT-ACAGATTTAACAAATGACATCCAAATATCAATAGCATCCCAAAAATTTGATGGAGCATCCA
65 AATAAC-GATTT-----AT---A--CAAA-A-CAATAGCATCCCACAAATTCCCTGGAGCACCCA
* * * *
35270 TGAATTCTCCTAAAAATGCATCTAAAGGAAATAAGCATGAAAAATAAAAACTAG-GCAAGTGGTT
117 TGAATTCTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAAC-CGTGCAAATGGTT
* * *
35334 TTTATATAACAATTTGAGATTGTGCAGATGGTTTTTATGCCCATAATTGTTCAAAAACGAAATTT
181 TTTATATCACAATTTGA-AAT-TG-AGATGGTTTTTATGCCCATAATTGTTCAGAAACGAAATTT
* * *
35399 TGATATTTTCAGCTCCAAAATCCTTCATGACTTACACCTAACACTGTGAAAATTTAAAACCAATG
243 TGATATTTTCAGCTCCAAAATCCTTCATGACTTACACTTAACACCGTGAAAAATTAAAACCAATG
* ** *
35464 CAGGTTATCATGTTTATGTGTTTGAGTGAGATTAAAACTATTCATTTCCATTT---AAC-TGCTA
308 CAGGTTATCATGTTTCTGTGTTTGAGCAAGTTTAAAACTATTCATTTCCATTTAAAAACTTGCTA
** * * ** *** * *
35525 TTGATATCATGGCACTTACTTTTAAAGCTT-GACTTTGGCAAAAATTGTTTTCAAAGCAAAACAT
373 -AAACAACATTTCA--TACTTTTAAAG-TTCGACTCCAGCAGAAATGGTTTTCAAAGCAAAACAT
** ** *
35589 AAATCTTTGAAAGCGTC
434 AAAAGTTCAAAAGCATC
* * * * * *
35606 AAGCTTTGTGTTTGAGGATAATGTATAAAAACAACTTAGCACACAGTTAATCGCATCAAGTGCCA
1 GAGCTTTGAGTTTGTGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCA
* * *
35671 ATAACAATTT-CACAAATTACATCCAAATATCGACAACATCCCACAAATTCCCTGGAGCAACCAT
66 ATAACGATTTATAC-AA--A-A--C-AATA--G----CATCCCACAAATTCCCTGGAGCACCCAT
* * * * * *
35735 GAATTCTCCTAAAAATACATCTAAAACAAATAAGCTTGAAAAATAAAAACCATGCAAATGATATT
118 GAATTCTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGT-TT
* * * * * *
35800 TTTTATCACAATTTGGAA--CAGATGGTTTTTATACACATAATTGTTTAGAAACGAAATTTTGAT
182 TTATATCACAATTTGAAATTGAGATGGTTTTTATGCCCATAATTGTTCAGAAACGAAATTTTGAT
* * ** * *
35863 ATTTTCATCTCCAAAATCCTTCATGGCAAACACTTAACACCGTGAAAAATT-AAACTAATGCATG
247 ATTTTCAGCTCCAAAATCCTTCATGACTTACACTTAACACCGTGAAAAATTAAAACCAATGCAGG
* * * *
35927 TTATCATGTTTTTGTGTTTCAGCGAGTTTAAAACTATTCATTTCCATTTTAAAACTTGCTAAAAC
312 TTATCATGTTTCTGTGTTTGAGCAAGTTTAAAACTATTCATTTCCATTTAAAAACTTGCTAAAAC
* *
35992 AACATTTCATACTTTTAAAGTTCGACTCTAGCA-AAACGGTTTTCAAAGCAAAACATAAAAGTTT
377 AACATTTCATACTTTTAAAGTTCGACTCCAGCAGAAATGGTTTTCAAAGCAAAACATAAAAG-TT
*
36056 TAAAAG-AGTC
441 CAAAAGCA-TC
** * * * ** * *
36066 GAGCTTT--GTGAGAG-A-AATGTAGAAAAACAAGTTAGTACACAGTTAATCATATCGAGTGCCA
1 GAGCTTTGAGTTTGTGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCA
* * *
36127 ATAACGATTTCATAAAAGACATCCAAATATGAACAGCATCCCACAAATTCCATGGAGCACCTATG
66 ATAACGATTT-ATACAA-A-A--C--A-AT----AGCATCCCACAAATTCCCTGGAGCACCCATG
*
36192 AATTCTCCTAAAAATG-ATCTAAAGCAAAAAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTT
119 AATTCTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTT
*
36256 ATTTCACAATTTGAAATTGAGCAGATGGTTTTTATGCCCATAATTGTTCAGAAACGAAATTTTGA
184 ATATCACAATTTGAAATT--G-AGATGGTTTTTATGCCCATAATTGTTCAGAAACGAAATTTTGA
* *
36321 TATTTTCAGCTCCAAAATCCATCATGACTTACAAC-TAACA-C-TG-AAAATTCAAAACTAATGC
246 TATTTTCAGCTCCAAAATCCTTCATGACTTAC-ACTTAACACCGTGAAAAATT-AAAACCAATGC
** * * * *
36382 AGGTTATCATGTTTAAGTATTTGAGCGAGATTAAAACTATTCATTTCCATTTGAAAACTTGCTAA
309 AGGTTATCATGTTTCTGTGTTTGAGCAAGTTTAAAACTATTCATTTCCATTTAAAAACTTGCTAA
* * * * *
36447 AACAACATTT-TTACTTTTAAAGTTCAACTCCAGGAAAAATGGTTTTCAAAACAAAACATAAAAG
374 AACAACATTTCATACTTTTAAAGTTCGACTCCAGCAGAAATGGTTTTCAAAGCAAAACATAAAAG
**
36511 CTTCAAAAGTGTC
439 -TTCAAAAGCATC
* * ** * * * *
36524 GAGATTTGTGTAAGAGCGTAATGTATAAAAACAAGTTAGCACATAGTTAATCGCATCAAGTGCCA
1 GAGCTTTGAGTTTGTGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCA
** *
36589 ATAACGATTTCACAAATGACATCCAAAACTCAATAGCATCCCACAAATTTACAGGAGCACCCATG
66 ATAACGATTT-----AT---A--CAAAA--CAATAGCATCCCACAAATTCCCTGGAGCACCCATG
* * * *
36654 AATTCTCCTAAAAATGCATCCAAAGGAAATAAGCATGAAAAATAAAAACCATGCAAATGGTTTTT
119 AATTCTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTT
* * * *
36719 ATATCACATTTTCAAATTGTGCAGATAGTTTTTATGCCCATAATTGTTTAGAAACGAAATTTTGA
184 ATATCACAATTTGAAA-T-TG-AGATGGTTTTTATGCCCATAATTGTTCAGAAACGAAATTTTGA
* * * * * * *
36784 TATTTTCACCTCCAAAACCCTTCATGACTTACACCTAACACCCTGAAAATTTAAAACTAATGCAT
246 TATTTTCAGCTCCAAAATCCTTCATGACTTACACTTAACACCGTGAAAAATTAAAACCAATGCAG
* * * *
36849 GTTACCATGTTTATGTGTTTGAG-AGAGATTAAAACTATTAATTTCCATTTAAAAACTTGCTAAA
311 GTTATCATGTTTCTGTGTTTGAGCA-AGTTTAAAACTATTCATTTCCATTTAAAAACTTGCTAAA
* * *
36913 ACAGCATTTCTTACTTTTAAAGCTCGACTCCAGCAGAAATGGTTTTCAAAGCAAAAC------G-
375 ACAACATTTCATACTTTTAAAGTTCGACTCCAGCAGAAATGGTTTTCAAAGCAAAACATAAAAGT
36971 T------CA--
440 TCAAAAGCATC
36974 -AGCTTTGAGTTTGTGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCA
1 GAGCTTTGAGTTTGTGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCA
* * * * *
37038 ACAACGATTTCACAAATGACATCCAAATATCAATAGCATCCAACAAATTCTCTGGACCACCCACG
66 ATAACGATTT-----AT---A--CAAA-A-CAATAGCATCCCACAAATTCCCTGGAGCACCCATG
* * * *
37103 AATTCTCGTAAAAATGCAACTAAAGCAAATAAGCATGAAAAATTAAAACCATGCAAGTGGTTTTT
119 AATTCTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTT
** * * * * *
37168 ATATCACAATTTGATTTTGTGCAGATGGTTTTTTTTTCCCACAATTGTTTAGAAATGAAATTTTG
184 ATATCACAATTTGA-AAT-TG-AGATGG-TTTTTATGCCCATAATTGTTCAGAAACGAAATTTTG
* * * ** *
37233 ATATTTTCAGCTCCAAAATCTTTCACGACTTACACTTAACGCAATGAAAAAATAAAACCAATGCA
245 ATATTTTCAGCTCCAAAATCCTTCATGACTTACACTTAACACCGTGAAAAATTAAAACCAATGCA
* * * ** * *
37298 GCTTATAATGTTTTTGTGTTTGAGCGTGTTTAAAATTATTAATTTCCATTTAAAAACTTGCTAAA
310 GGTTATCATGTTTCTGTGTTTGAGCAAGTTTAAAACTATTCATTTCCATTTAAAAACTTGCTAAA
* * * * * *
37363 ACAACATTTTATTCTTTTAAAGTTTGACTCAAGCAGAAATGGATTTCAAAACAAAACATAAAAGT
375 ACAACATTTCATACTTTTAAAGTTCGACTCCAGCAGAAATGGTTTTCAAAGCAAAACATAAAAG-
**
37428 TTCAAAAG-AGAA
439 TTCAAAAGCA-TC
* * * * * * *
37440 AAGCTTTGAATTTCTGCATAATGTATAAAAGCAAGTTAGCGCACAGTTAATCACATCAAGTGCCA
1 GAGCTTTGAGTTTGTGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCA
* *
37505 ATAACGA-TT-T-C-AAA-AAT-GCATCCCACAAATTCACTGAAGCACCCATGAATTCTCCTAAA
66 ATAACGATTTATACAAAACAATAGCATCCCACAAATTCCCTGGAGCACCCATGAATTCTCCTAAA
* ** *
37564 AATGCATCTAAATCAAATAAGCATGAAAAATTAAAACCGTGCAAACAGTTTTTATACCACAATTT
131 AATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATATCACAATTT
* * * * *
37629 GAAATT-ATATGGTTTTTATACCCAAAATTGTTCAGAAA-GAAAATTTTGATATTGTCAACTCCA
196 GAAATTGAGATGGTTTTTATGCCCATAATTGTTCAGAAACG-AAATTTTGATATTTTCAGCTCCA
* * * *
37692 AAATCCCTCATGACTTACACTTAACACCGTGAAAAATTAGAACAAATACAGGTTATCATGTTAT-
260 AAATCCTTCATGACTTACACTTAACACCGTGAAAAATTAAAACCAATGCAGGTTATCATGTT-TC
*
37756 TGTGTTTGAGCAAGTTTAAAACTATTCATTTCCATTTAAAAACTTCCTAAAACAACATTTCATAC
324 TGTGTTTGAGCAAGTTTAAAACTATTCATTTCCATTTAAAAACTTGCTAAAACAACATTTCATAC
* * *
37821 TTTTAAAGTTCGACTCCAGTAAAAATGGTTTTCAAATCAAAACATAAAAGCTTCAAAAGCATC
389 TTTTAAAGTTCGACTCCAGCAGAAATGGTTTTCAAAGCAAAACATAAAAG-TTCAAAAGCATC
* * ** * * *
37884 GAGCTTTGTGTTTGTGCATAATGTATAGAAGGAAATTAGCACACAGTTAATCGCATCAAGCACCC
1 GAGCTTTGAGTTTGTGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCA
* ** * * *
37949 ATAACTATTTGACAAATGATATCCAAATATCAACGGCATCCCATAAATTCCCTGGTGCACTCATG
66 ATAACGA-TT------T-ATA--CAAA-A-CAATAGCATCCCACAAATTCCCTGGAGCACCCATG
* **
38014 AATTCTCCCAAAAATGCATCTAAAGCAAA-AAAAATGAAAAATTAAAACCGTGCAAATGGTTTTT
119 AATTCTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTT
38078 ATATCACAATTTGAAATTTTGCAGATGGTTTTTATGCCCATAATTGTTCAGAAACGAAATTTTGA
184 ATATCACAATTTGAAA--TTG-AGATGGTTTTTATGCCCATAATTGTTCAGAAACGAAATTTTGA
* * *
38143 TATTTTCAGCTCCAAAATCCTTCATGACTTACACTTAGCACCATGAAAATTTAAAACCAATAG-A
246 TATTTTCAGCTCCAAAATCCTTCATGACTTACACTTAACACCGTGAAAAATTAAAACCAAT-GCA
* *
38207 GGTTATCATGTTTCTGTGTTTGAGCGAGTTTAAAACTATTCATTTTCATTTAAAAACTTGCTAAA
310 GGTTATCATGTTTCTGTGTTTGAGCAAGTTTAAAACTATTCATTTCCATTTAAAAACTTGCT-AA
* * * * * *
38272 AACACCATTTTCGTACTTTTATAGCTT-GACTCCAGCACAAATCGTTGTC-AAG-----------
374 AACAACA-TTTCATACTTTTAAAG-TTCGACTCCAGCAGAAATGGTTTTCAAAGCAAAACATAAA
*
38324 -G--CAAAA-CGTC
437 AGTTCAAAAGCATC
* * * * * * * *
38334 GAGCTTTGAGTCTGTGCGTAATGTATAAAAACAGGTTCGCACATAATTAATCGCCTCAAGCACCA
1 GAGCTTTGAGTTTGTGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCA
** * * * *
38399 ATAGTGATTTCACCAATGACATCCAAATATCAATAGTATCCCACAAATTCCCTAGAGCACCTACG
66 ATAACGATTT-----AT---A--CAAA-A-CAATAGCATCCCACAAATTCCCTGGAGCACCCATG
* * * * *
38464 AATTCTCATATAAATGCATCTAAAGCAAATATGAATAAAAAATTAAAACCGTGCAAATGGTTTTT
119 AATTCTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTT
*
38529 ATATCACAATTTGAAATTGCGCAGAAGGTTTTTATG-CCATAATTGTTCAGAAACGAAA-TTTGA
184 ATATCACAATTTGAAATT--G-AGATGGTTTTTATGCCCATAATTGTTCAGAAACGAAATTTTGA
* * * * * *
38592 TATTTTCACCTCCAAAATCCTTCATGAC-T--A-TTTACACTGTCAAGAATTAAAAACAATGCAG
246 TATTTTCAGCTCCAAAATCCTTCATGACTTACACTTAACACCGTGAAAAATTAAAACCAATGCAG
* * *
38653 GTTATTATGTTTCTGTGTTTGAGCAAGTTTAAAACTATTCATTTCCACTTTAAAAACTCGCCAAA
311 GTTATCATGTTTCTGTGTTTGAGCAAGTTTAAAACTATTCATTTCCA-TTTAAAAACTTGCTAAA
* * * *
38718 ACAACATTTCATACTTTTAAAGCTCAACTCAAGCAGAGATGGTTTTCAAAG-----C--AAAA--
375 ACAACATTTCATACTTTTAAAGTTCGACTCCAGCAGAAATGGTTTTCAAAGCAAAACATAAAAGT
38774 -C----G--TC
440 TCAAAAGCATC
* * * *
38778 GAGCTTTGAGTTTGTGCGTATTGTATAAAAACAAGTTAGCACACAGTTAATCGTATCAAGCGTCA
1 GAGCTTTGAGTTTGTGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCA
* * * *
38843 ATAACGATTTCACAAATGACATCCAAATATCAACAGCTTCCCACAAATTCTCTGGAGCCCCCATG
66 ATAACGATTT-----AT---A--CAAA-A-CAATAGCATCCCACAAATTCCCTGGAGCACCCATG
* *
38908 AATTCTCCTAAAAATGCATCTAAAGAAAATAAGCATGAAAAATTAAAACCGTGCAAATTGTTTTT
119 AATTCTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTT
* ** * *
38973 ATATCACAATTTGAAATTGTGCAAATCATTTTTATGCCGATAATTGTTCAGAAATGAAATTTTGA
184 ATATCACAATTTGAAA-T-TG-AGATGGTTTTTATGCCCATAATTGTTCAGAAACGAAATTTTGA
* * * * *
39038 TATTTTCAGCACCAAAATCCTTCATGACATGCACCTAACA-C-TGAAAAATTAAAACCAATGCAA
246 TATTTTCAGCTCCAAAATCCTTCATGACTTACACTTAACACCGTGAAAAATTAAAACCAATGCAG
* *
39101 GTTATCATTTTTCTGTGTTTGAGCAAGTTTAAAACTACT-ATTTCCATTTAAAAACTTGCTAAAA
311 GTTATCATGTTTCTGTGTTTGAGCAAGTTTAAAACTATTCATTTCCATTTAAAAACTTGCTAAAA
* * * *
39165 CAACATTCCATACTTTTAAAGCTCGACTCCAACAGAAAT-GTTTCCAAAGCAAAACATAAAAGCT
376 CAACATTTCATACTTTTAAAGTTCGACTCCAGCAGAAATGGTTTTCAAAGCAAAACATAAAAG-T
* *
39229 TCAAAAGCGTT
440 TCAAAAGCATC
* * * * * * *
39240 GAGCTTTGAGTTTGAGCGTAATGTATAAAAACATGTTGGCAGACAGTTAATCGCCTGGAA-CGCC
1 GAGCTTTGAGTTTGTGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCGCAT-CAAGCGCC
* * * *
39304 AATAATGATTTCACAAATAATATCCAAATATCAACA-CTATCCCACAAAGTCCTTGGAGCACCCA
65 AATAACGA-TT------T-ATA--CAAA-A-CAATAGC-ATCCCACAAATTCCCTGGAGCACCCA
* * *
39368 TGAATTCTCCTAAAAATGCATCTAAAGCAAAAAAGAATGAAAAATTAAAACTGTGCAAATGGTTT
117 TGAATTCTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTT
* ** *
39433 TTATATCAGAATTTGAAATTGTGCAGATGGTTTTTATGAACGTAATTGTTCAGAAACGAAATTTT
182 TTATATCACAATTTGAAA-T-TG-AGATGGTTTTTATGCCCATAATTGTTCAGAAACGAAATTTT
39498 GA
244 GA
39500 AAAAGCTTCA
Statistics
Matches: 3668, Mismatches: 512, Indels: 361
0.81 0.11 0.08
Matches are distributed among these distances:
443 3 0.00
444 490 0.13
445 113 0.03
446 96 0.03
447 11 0.00
448 56 0.02
449 327 0.09
450 341 0.09
451 68 0.02
452 6 0.00
453 3 0.00
454 22 0.01
455 39 0.01
456 106 0.03
457 30 0.01
458 136 0.04
459 155 0.04
460 131 0.04
461 49 0.01
462 376 0.10
463 164 0.04
464 147 0.04
465 293 0.08
466 186 0.05
467 301 0.08
468 12 0.00
469 4 0.00
470 1 0.00
471 2 0.00
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.30
Consensus pattern (450 bp):
GAGCTTTGAGTTTGTGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCA
ATAACGATTTATACAAAACAATAGCATCCCACAAATTCCCTGGAGCACCCATGAATTCTCCTAAA
AATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATATCACAATTT
GAAATTGAGATGGTTTTTATGCCCATAATTGTTCAGAAACGAAATTTTGATATTTTCAGCTCCAA
AATCCTTCATGACTTACACTTAACACCGTGAAAAATTAAAACCAATGCAGGTTATCATGTTTCTG
TGTTTGAGCAAGTTTAAAACTATTCATTTCCATTTAAAAACTTGCTAAAACAACATTTCATACTT
TTAAAGTTCGACTCCAGCAGAAATGGTTTTCAAAGCAAAACATAAAAGTTCAAAAGCATC
Found at i:40200 original size:746 final size:740
Alignment explanation
Indices: 38775--40214 Score: 2046
Period size: 746 Copynumber: 1.9 Consensus size: 740
38765 AAAGCAAAAC
* * *
38775 GTCGAGCTTTGAGTTTGTGCGTATTGTATAAAAACAAGTTAGCACACAGTTAATCGTATCAAGCG
1 GTCGAGCTTTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCACCAAGCG
* * * * * * **
38840 TCAATAACGATTTCACAAATGACATCCAAATATCAACAGCTTCCCACAAATTCTCTGGAGCCCCC
66 ACAAGAACGATTTCACAAATGACATCAAAATATCAACAGCATCCCACAAATACCCTGGAGAACCC
* * * *
38905 ATGAATTCTCCTAAAAATGCATCTAAAGAAAATAAGCATGAAAAATTAAAACCGTGCAAATTGTT
131 ATGAATTCTCCAAAAAATGCATCTAAAGAAAATAAGAATGAAAAATAAAAACCGTGCAAATGGTT
* * * * *
38970 TTTATATCACAATTTGAAATTGTGCAAATCATTTTTATGCCGATAATTGTTCAGAAATGAAATTT
196 TTTATATCACAATTCGAAATTATGCAAATCATTTTTATGCCCATAATTCTTCAGAAACGAAATTT
* * *
39035 TGATATTTTCAGCACCAAAATCCTTCATGACATGCACCTAACACTGAAAAATTAAAACCAATGCA
261 TGATATTTTCAGCACCAAAATACTTCATAACATACACCTAACACTGAAAAATTAAAACCAATGCA
* *
39100 AGTTATCATTTTTCTGTGTTTGAGCAAGTTTAAAACTACTATTTCCATTTAAAAACTTGCTAAAA
326 AGTTATCATGTTTCTGTGATTGAGCAAGTTTAAAACTACTATTTCCATTTAAAAACTTGCTAAAA
* * *
39165 CAACATTCCATACTTTTAAAGCTCGACTCCAACAGAAATGTTTCCAAAGCAAAACATAAAAGCTT
391 CAACATTCCATACTTTTAAAGCTCGACTACAACACAAATGTTTCCAAAACAAAACATAAAAGCTT
* * * * *
39230 CAAAAGCGTTGAGCTTTGAGTTTGAGCGTAATGTATAAAAACATGTTGGCAGACAGTTAATCGCC
456 CAAAAGCGTCGAGCTTTGAGTTTGAGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGAC
* * * * **
39295 TGGAACGCCAATAATGATTTCACAAATAATATCCAAATATCAACACTATCCCACAAAGTCCTTGG
521 AGAAACGCCAATAACGATTTCACAAATAACATCCAAATATCAACACTATCCCACAAAGTCCCGGG
* * **
39360 AGCACCCATGAATTCTCCTAAAAATGCATCTAAAGCAAAAAAGAATGAAAAATTAAAACTGTGCA
586 AGCACCCATGAATTCTCCTAAAAAGGCAGCTAAAGCAAAAAAGAATGAAAAATTAAAACCATGCA
* *
39425 AATGGTTTTTATATCAGAATTTGAAATTGTGCAGATGGTTTTTATGAACGTAATTGTTCAGAAAC
651 AAAGGTTTTTATATCACAATTTGAAATTGTGCAGATGGTTTTTATGAACGTAATTGTTCAGAAAC
39490 GAAATTTTGAAAAAGCTTCAAAAGT
716 GAAATTTTGAAAAAGCTTCAAAAGT
* *
39515 GTCGAGCTTTGAGTTTGTGCGTAATGTGTAAAATCAAGTTAGCACACAGTTAATCGCACCAAGTC
1 GTCGAGCTTTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCACCAAG-C
*
39580 -ACAAGAATGATTTCACAAATGACATCAAAATATCAACAGCATCCCACAAATACCCTGGAGAACC
65 GACAAGAACGATTTCACAAATGACATCAAAATATCAACAGCATCCCACAAATACCCTGGAGAACC
* *
39644 CATGACTTTCTGCAAAAATATGCATCTAAAGCAAAA-AAGAATGAAAAATAAAAACCGTGCAAAT
130 CATGA-ATTCTCCAAAAA-ATGCATCTAAAG-AAAATAAGAATGAAAAATAAAAACCGTGCAAAT
* * * **
39708 GGTTTTTATATCATAATTCGAAATTATGTAGATGGTTTTTATGCCCATAATTCTTCAGAAACGAA
192 GGTTTTTATATCACAATTCGAAATTATGCAAATCATTTTTATGCCCATAATTCTTCAGAAACGAA
* * *
39773 ATTTTGATATTTTCATCTA-CAAAATACTTCGTAACTTACA-CTAAACACCGTGAAAAATTAAAA
257 ATTTTGATATTTTCAGC-ACCAAAATACTTCATAACATACACCT-AACA-C-TGAAAAATTAAAA
* ** *
39836 CCAATGCAGGTTATCATGTTTCTGTGATTGAGTGAGTTTAAAACTATTCATTTCCATTTAAAAAC
318 CCAATGCAAGTTATCATGTTTCTGTGATTGAGCAAGTTTAAAACTACT-ATTTCCATTTAAAAAC
* * * *
39901 TTTCTAAAACAACATTTCATACTTTTACAGCTCGACTACAGCACAAATGGTTTCCAAAACAAAAC
382 TTGCTAAAACAACATTCCATACTTTTAAAGCTCGACTACAACACAAAT-GTTTCCAAAACAAAAC
* *
39966 GTAAAAGCTTCAAAAGCGTCGAGCTTTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACACA
446 ATAAAAGCTTCAAAAGCGTCGAGCTTTGAGTTTGAGCGTAATGTATAAAAACAAGTTAGCACACA
* *
40031 GTTAATC-ACAGCAAACTCCAATAACGATTTCACAAATGACATCCAAATATCAACAGC-ATCCCA
511 GTTAATCGACAG-AAACGCCAATAACGATTTCACAAATAACATCCAAATATCAACA-CTATCCCA
* * * **
40094 CAAATTCCCGGGAGCACCCATGAATTCTCCTAAAAAGGCAGCTCAAGCAAATAAGCGTGAAAAAT
574 CAAAGTCCCGGGAGCACCCATGAATTCTCCTAAAAAGGCAGCTAAAGCAAAAAAGAATGAAAAAT
*
40159 TAAAACCATGCAAAAGGTTTTTATATCACAGTTTGAAATTGTGCAGATGGTTTTTA
639 TAAAACCATGCAAAAGGTTTTTATATCACAATTTGAAATTGTGCAGATGGTTTTTA
40215 CGCCCATAAT
Statistics
Matches: 612, Mismatches: 76, Indels: 18
0.87 0.11 0.03
Matches are distributed among these distances:
740 118 0.19
741 12 0.02
742 128 0.21
743 6 0.01
744 55 0.09
745 60 0.10
746 232 0.38
747 1 0.00
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.29
Consensus pattern (740 bp):
GTCGAGCTTTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCACCAAGCG
ACAAGAACGATTTCACAAATGACATCAAAATATCAACAGCATCCCACAAATACCCTGGAGAACCC
ATGAATTCTCCAAAAAATGCATCTAAAGAAAATAAGAATGAAAAATAAAAACCGTGCAAATGGTT
TTTATATCACAATTCGAAATTATGCAAATCATTTTTATGCCCATAATTCTTCAGAAACGAAATTT
TGATATTTTCAGCACCAAAATACTTCATAACATACACCTAACACTGAAAAATTAAAACCAATGCA
AGTTATCATGTTTCTGTGATTGAGCAAGTTTAAAACTACTATTTCCATTTAAAAACTTGCTAAAA
CAACATTCCATACTTTTAAAGCTCGACTACAACACAAATGTTTCCAAAACAAAACATAAAAGCTT
CAAAAGCGTCGAGCTTTGAGTTTGAGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGAC
AGAAACGCCAATAACGATTTCACAAATAACATCCAAATATCAACACTATCCCACAAAGTCCCGGG
AGCACCCATGAATTCTCCTAAAAAGGCAGCTAAAGCAAAAAAGAATGAAAAATTAAAACCATGCA
AAAGGTTTTTATATCACAATTTGAAATTGTGCAGATGGTTTTTATGAACGTAATTGTTCAGAAAC
GAAATTTTGAAAAAGCTTCAAAAGT
Found at i:42625 original size:466 final size:462
Alignment explanation
Indices: 41503--42912 Score: 1818
Period size: 466 Copynumber: 3.0 Consensus size: 462
41493 CAGGTTAAAC
* * * *
41503 CATAAAA-CTTGAAAAGTGTCAAGCTTTGACTTTGTGCGTAATTTATAAAAACAAGTTAGCACAC
1 CATAAAAGCTTCAAAAGTGTCGAGCTTTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACAC
*
41567 AGTTAATCGCATCAAGCGCCAATAACGATTTCACAAATGACATCCAAATATCAACAGTATCCACA
66 AGTTAATCGCATCAAGCGCCAATAACGATTTCACAAATGACATCCAAATATCAACAGCATCCACA
*
41632 AATTCCCTAGAGCACCAATGAATTCTCCTAAAAAAGCATG-TAAAGCAAATAAGCATAAAAAATT
131 AATTCCCT-GAGCACCAATGAATTCTCCT-AAAAAGCA-GCTAAAGCAAATAAGCATGAAAAATT
* ** * * *
41696 AAAACCATGTGAATGGTTTTAATATCACAATTTGAAATTCTGCAGGTGGTTTTTATGCCCATAAT
193 AAAACCGTGCAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATGGTTTTTATGCCCATAAT
* * * *
41761 TGTTAAGAAGTGAAATTTTGATATTTTCAACTCCAAAATCCTTCATGACATGCACCTAACACCAT
258 TGTTCAGAAATGAAATTTTGATATTTTTAACTCCAAAATCCTTCATGACATGCACCTAACACCGT
* *
41826 GAAAAATTAAAACCAATGCAGGTTATCATTTTTTTTTGTGTTTGAGCGAGTTTAAAACTATTCAT
323 GAAAAATTAAAACCAATGCA-GTTATCA--TTTTTCTGTGATTGAGCGAGTTTAAAACTATTCAT
* * *
41891 TTCCATTTAAAAACTTACTAAAACAACGTTTCATACTTTTAAAGC-CAAACTCCAGCAGATATGG
385 TTCCATTTAAAAACTTACTAAAACAACATTTCATACTTTTAAAGCTC-GACTCCAGCAGAAATGG
*
41955 CTTCCAAAGCAAAA
449 TTTCCAAAGCAAAA
* * * *
41969 CCTAAAAGCTTTAAAAGTGTCGAGCTTTGAGTTTGTGTGTAATGAATAAAAACAAG--A--ACAC
1 CATAAAAGCTTCAAAAGTGTCGAGCTTTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACAC
* * * *
42030 AGTTAATCACATCAAAGCGCCAATAACAATTTCACAAATGATATCTAAATATCAACAGCATCCAG
66 AGTTAATCGCATC-AAGCGCCAATAACGATTTCACAAATGACATCCAAATATCAACAGCATCCA-
* *
42095 CAAATTCCCTGAGGCACCCATGAATTCTCCTGAAAAAGCATCTAAAGCAAATAAGCATGAAAAAT
129 CAAATTCCCTGA-GCACCAATGAATTCTCCT-AAAAAGCAGCTAAAGCAAATAAGCATGAAAAAT
* *
42160 TAAAATCGTGCAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATGGTTTTTATACCCATAA
192 TAAAACCGTGCAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATGGTTTTTATGCCCATAA
* * * * * * * * *
42225 TTGTTCAGAAATGAAAATTTGATTTTTTTTAACTCCGAAATACTCCATGACTTCCACCTAGCACT
257 TTGTTCAGAAATGAAATTTTGA-TATTTTTAACTCCAAAATCCTTCATGACATGCACCTAACACC
* ** * **
42290 GTGAAAAATTAAAACCAACGCAGCTTATCACGTTTCTGTGATTCAATGAGTTTAAAA-TATTCAT
321 GTGAAAAATTAAAACCAATGCAG-TTATCATTTTTCTGTGATTGAGCGAGTTTAAAACTATTCAT
* ** * *
42354 TTCCGTTTAAAAACTTTTTAAAACAACATTTCATACTTTTAAAGCTCGACTACAGCATAAATGGT
385 TTCCATTTAAAAACTTACTAAAACAACATTTCATACTTTTAAAGCTCGACTCCAGCAGAAATGGT
42419 TTCCAAAGCAAAA
450 TTCCAAAGCAAAA
* * * * * *
42432 CGTAAAAGCTGCAAAAGCGTCGAGCTATGAGTTTGTACGTAATGTATAAAACCAAGTTAGCACAC
1 CATAAAAGCTTCAAAAGTGTCGAGCTTTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACAC
* * * *
42497 AATTAATCGCATCAAGTGCCAATAATGATTTCACAAATGACATCCAAATATCAACAGCAACCCAC
66 AGTTAATCGCATCAAGCGCCAATAACGATTTCACAAATGACATCCAAATATCAACAGC-ATCCAC
* * * *
42562 AAATTCCTTGGAGCACCAATGAATTCTCCTAAAAATTCGGCTGAAGCAAATAAGCGA-GAAAAAT
130 AAATTCCCT-GAGCACCAATGAATTCTCCTAAAAA-GCAGCTAAAGCAAATAAGC-ATGAAAAAT
**
42626 TAAAACCGCACAAATGGTTTTTATATCACAATATATG--ATTGTGCAGATGGTTTTTATGCCCAT
192 TAAAACCGTGCAAATGGTTTTTATATCACAAT-T-TGAAATTGTGCAGATGGTTTTTATGCCCAT
* *
42689 AATTGTTCCA-AAATGAATTTTTGATATTTTTAGCTCCAAAATCCTTCATGACATGCACCTAACA
255 AATTGTT-CAGAAATGAAATTTTGATATTTTTAACTCCAAAATCCTTCATGACATGCACCTAACA
* *
42753 CCGTGAAAAATTAAAACCAATGTAAGTTATCATTTTTCTGTGATTGGGCGAGTTTAAAACTATTC
319 CCGTGAAAAATTAAAACCAATG-CAGTTATCATTTTTCTGTGATTGAGCGAGTTTAAAACTATTC
** * * * *
42818 ATTTCCATTTAAAAACTCGCTAAAACGACATTTCATACCTTTAAAGCTTGACTCCAGCAGAGATG
383 ATTTCCATTTAAAAACTTACTAAAACAACATTTCATACTTTTAAAGCTCGACTCCAGCAGAAATG
*
42883 GTTTCCAAACCAAAA
448 GTTTCCAAAGCAAAA
42898 CATAAAAGCTTCAAA
1 CATAAAAGCTTCAAA
42913 TGACATCCAA
Statistics
Matches: 810, Mismatches: 113, Indels: 42
0.84 0.12 0.04
Matches are distributed among these distances:
463 137 0.17
464 69 0.09
465 220 0.27
466 315 0.39
467 67 0.08
468 2 0.00
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (462 bp):
CATAAAAGCTTCAAAAGTGTCGAGCTTTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACAC
AGTTAATCGCATCAAGCGCCAATAACGATTTCACAAATGACATCCAAATATCAACAGCATCCACA
AATTCCCTGAGCACCAATGAATTCTCCTAAAAAGCAGCTAAAGCAAATAAGCATGAAAAATTAAA
ACCGTGCAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATGGTTTTTATGCCCATAATTGT
TCAGAAATGAAATTTTGATATTTTTAACTCCAAAATCCTTCATGACATGCACCTAACACCGTGAA
AAATTAAAACCAATGCAGTTATCATTTTTCTGTGATTGAGCGAGTTTAAAACTATTCATTTCCAT
TTAAAAACTTACTAAAACAACATTTCATACTTTTAAAGCTCGACTCCAGCAGAAATGGTTTCCAA
AGCAAAA
Found at i:43847 original size:465 final size:463
Alignment explanation
Indices: 43281--46540 Score: 2554
Period size: 465 Copynumber: 7.0 Consensus size: 463
43271 ATGCAAAACT
* * *
43281 TCGAGTTTTGAGTCTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGTGC
1 TCGAGCTTTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGC
* * * *
43346 CAATAATGATTTCACAAATCATATCCAAATATCAACAGCATCCCACAAATTCCCTAGAGCACCCA
66 CAATAACGATTTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTGGAGCACCCA
* * * * * *
43411 TGAATTCTCCGAAAAATGCATCTAAAGCAAATATGCATGACAAATTAAAACCTTGCAAACGACTT
131 TGAATTCTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATG-TTT
* * **
43476 TTATATCACAATTCGAGATTGTGCAGATAGTTTTTACACCCATAATTGTTCAGAAATGAAAATTT
195 TTATATCACAATTTGAGATTGTGCAGATGGTTTTTATGCCCATAATTGTTCAGAAATGAAAATTT
* *
43541 GATTTTTTTGA-CTCCAAAATACTTCATGATTTGCACCTAACACCGAGAAAAATT-ATACCAACG
260 GA-TTTTTTGAGCTCCAAAATACTTCATGATTT-CACCTAACACC-AGAAAAATTAAAACCAATG
* * * *
43604 CAGCTTATCATGTTGCTGTGATTCAGCAAGTTTAAAACTATTCATTTCCTTTTAAAAACTTTCTA
322 CAGGTTATCATGTTTCTGTGATTGAGCAAGTTTAAAACTATTCATTTCCATTTAAAAACTTTCTA
* *
43669 AAACAACATTTCATACTTTTAAAGCTCAACTACAGTATAAATGGCTTCCAAAGCAAAACGTAAAA
387 AAACAACATTTCATACTTTTAAAGCTCGACTACAGTATAAATGGTTTCCAAAGCAAAACGTAAAA
*
43734 GCTTCAAAAGTA
452 GCTTCAAAAGCA
* *
43746 TCGAGCTTTGACTTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCTC
1 TCGAGCTTTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGC
*
43811 CAATAAGGATTTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTGGAGCACCCA
66 CAATAACGATTTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTGGAGCACCCA
* * * * * *
43876 CGAATTCTCCTAAAAATTCAGCTGAAGCAAATAAGCCTGAAAAATTAAAACCGTGCAGATTGTTT
131 TGAATTCTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCA-AATGTTT
* * * *
43941 TTATATCACAATTTGAGATTGTCCATATGGTTTTTGTGCCCATAATTGTTCAG-AGT-AAAA---
195 TTATATCACAATTTGAGATTGTGCAGATGGTTTTTATGCCCATAATTGTTCAGAAATGAAAATTT
** * ** * *
44001 -A--ACTTGA--T-----A-A---C----TTTCAACTAACACTGTGAAAACTTAAAACCAAAGCA
260 GATTTTTTGAGCTCCAAAATACTTCATGATTTCACCTAACAC-CAGAAAAATTAAAACCAATGCA
* * ** *
44048 GGTTATCATTTTTCTGTGTTTGAGTGAGTTTAAAACTATTTATTTCCATTTAAAAACTTTCTAAA
324 GGTTATCATGTTTCTGTGATTGAGCAAGTTTAAAACTATTCATTTCCATTTAAAAACTTTCTAAA
* * * *
44113 ACAATATTTCATACTTTTAAAACTCGACCACA-TCATAAATGATTTCCAAAGCAAAACGTAAAAG
389 ACAACATTTCATACTTTTAAAGCTCGACTACAGT-ATAAATGGTTTCCAAAGCAAAACGTAAAAG
* *
44177 CTTCAAAGGCG
453 CTTCAAAAGCA
* * ** * *
44188 TTGAGCTTTTAGTTTGTGCGTAACATATAAAAAGAA-TTAGCACACAGTTAATCGCATCAAGCCC
1 TCGAGCTTTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGC
* *
44252 CAATAATGATTTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTGGAGCACCAA
66 CAATAACGATTTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTGGAGCACCCA
* * *
44317 TGAATTGTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCATGCAAATGGATT
131 TGAATTCTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAAT-GTTT
* * *
44382 TTATATCACAATTTGAGATTGTGCAGATGGTTTTTATGCCCATAATTGTTCATAAACGAAATTTT
195 TTATATCACAATTTGAGATTGTGCAGATGGTTTTTATGCCCATAATTGTTCAGAAATGAAAATTT
* * * * * * * * *
44447 CATATTTTCAGCTACAAAATCCTTAATGACTTTCACTTAAAACCATGAGAAATTAAAACCAATGC
260 GATTTTTTGAGCTCCAAAATACTTCATGA-TTTCACCTAACACCA-GAAAAATTAAAACCAATGC
* * * *
44512 AGGTTATCATGTTTTTGTGATTGAGCGAGTTTAAACCTACTCATTTCCATTTAAAAACTTTCTAA
323 AGGTTATCATGTTTCTGTGATTGAGCAAGTTTAAAACTATTCATTTCCATTTAAAAACTTTCTAA
* * * * *
44577 AACAACATTTCATACTTTTAAAGCTTGACTACAGGATAAGTGGTTTCCAAAGCAAAACTTAAATG
388 AACAACATTTCATACTTTTAAAGCTCGACTACAGTATAAATGGTTTCCAAAGCAAAACGTAAAAG
*
44642 TTTCAAAAG-A
453 CTTCAAAAGCA
* * *
44652 GTCGAGCTTTGAGTTTGTTCGTAATGTATAAGAACAAGTTAGCACACAGTTAATCCCATCAAAGC
1 -TCGAGCTTTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATC-AAGC
* *
44717 GCCAATAACGATTTCACAAATGACATTCAAATATCAACAGCATCCCACAAATTCCCTTGAGCACC
64 GCCAATAACGATTTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTGGAGCACC
* *
44782 CATGAATTGTCCTAAAAATGCATCTAAAGCAAATAA-CATGAAAAATTAAAACCGTTCAAATGGT
129 CATGAATTCTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAAT-GT
* * * * * * * *
44846 TTTTATATCAGAATTTGAGATGGGGCAGATCGTTTTTAGGCTCATAATTGCTCAGAAATGAAATT
193 TTTTATATCACAATTTGAGATTGTGCAGATGGTTTTTATGCCCATAATTGTTCAGAAATGAAAAT
* * *
44911 TTGATATTTTT-AGCTCCAAAATCCTTCATGACTTGCACCTAACA-CTGAAAAATTAAAACCAAT
258 TTGAT-TTTTTGAGCTCCAAAATACTTCATGA-TTTCACCTAACACCAGAAAAATTAAAACCAAT
* * * * * *
44974 GCAAGTTATCATTTTTCTATGTTTTAGCGAA-TTTAAAACTATTCATTTCCATTTAAAAACTTAC
321 GCAGGTTATCATGTTTCTGTGATTGAGC-AAGTTTAAAACTATTCATTTCCATTTAAAAACTTTC
* * * * * *
45038 TAAAACAACATTTCATA-TATTTAAAGCTCGACT-CTAGCAGAAATAGTTTCGAAAGTAAAACAT
385 TAAAACAACATTTCATACT-TTTAAAGCTCGACTAC-AGTATAAATGGTTTCCAAAGCAAAACGT
* *
45101 AAAAAGCTTCGAAAGCG
448 -AAAAGCTTCAAAAGCA
* * * * * *
45118 TC-ACACTTTCAATTTGTGCATAATGTATAAAAACAAGTTAAGCACACATTTAATCACATCAAAG
1 TCGA-GCTTTGAGTTTGTGCGTAATGTATAAAAACAAGTT-AGCACACAGTTAATCGCATC-AAG
* * * *
45182 CGCGAATAACCATTTCACAAATGACATCCAAATATCAACCGCATCCCAAAAATTCCCTGGAGCAC
63 CGCCAATAACGATTTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTGGAGCAC
* * ** * *
45247 CCATGAATTCTCCTAAAAAGGCAGT-TGAAGCAAATAAGTGTGAAAAATTATAACCGTGCAATTG
128 CCATGAATTCTCCTAAAAATGCA-TCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAAT-
* * ** * * *
45311 GTTTTAATATCACAATTTTAGATTGTGCAGATGGTTTTTAT----ATTTTTAGCTC-CAAATAAA
191 GTTTTTATATCACAATTTGAGATTGTGCAGATGGTTTTTATGCCCATAATT-GTTCAGAAATGAA
** ** * * ** * * ** *
45371 AACCGTTCAAATGGTTTTT-ATAT-CAGAAT--TTGA-GATGGGGCAGATCGTTTTTAGGCTCAT
255 AA---TT-TGAT--TTTTTGAGCTCCAAAATACTTCATGAT--TTC--A-C---CTAACAC-CAG
**** * * ** * * * ** ** * ** *
45431 AATTGCTCAGA--AATG-AAATTTTCATATTT-T-TAGCTCCAAAATACTTTCATCACT-TGCAC
305 AAAAATTAAAACCAATGCAGGTTATCATGTTTCTGT-GATTGAGCA-AGTTT-AAAACTATTCA-
** ** * * * **
45490 CTAACACCGTGAAAAA---T-TAAAACCAATGTAGGTTATCATTTTTCTGTGTTTGAG--CGAGC
366 -TTTC-CATTTAAAAACTTTCTAAAA-CAA--CA--TT-TCA---TACT-T-TTAAAGCTCGA-C
* ** *** * * * *
45549 TTCAAAGTAT---TCATTT-CAATTTAAAAAGT---TGC-TAAAACAACA
417 -T-ACAGTATAAATGGTTTCCAAAGCAAAACGTAAAAGCTTCAAA-AGCA
* ** * * * * * * *
45591 TTTCATAATTTTTAAAGCTTG-AC-TACA-GCAT--AAA-TAGTTTCCAAAGCAAAACA--TAAA
1 --TC--GAGCTTT-GAGTTTGTGCGTA-ATGTATAAAAACAAG-TT----AGC-ACACAGTTAAT
* ** * * *** **
45648 AGCATCAA-AACC-GT--CGAGCTTTGA-GTTTG---TGCGTAATATCAACAGCATCCCACAAAT
54 CGCATCAAGCGCCAATAACGA--TTTCACAAATGACAT-CCAAATATCAACAGCATCCCACAAAT
* * * * * * *
45705 TCCC-GGAGCACCCATAAATTCTCCTAAAAAATTCAGCTGAAGGAAACAAGCATGAAAAATAAAA
116 TCCCTGGAGCACCCATGAATTCTCCT-AAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAA
* * * * * *
45769 ATCATGCAAATGATTTTTATATCGCAATTTTAGATTATGCATATGGTTTTTATGCCCATAATTGT
180 ACCGTGCAAATG-TTTTTATATCACAATTTGAGATTGTGCAGATGGTTTTTATGCCCATAATTGT
* * * * * * *
45834 TCAGAAATGAAATTTTGATTTTTTTTAACTCCTAAGTACTTCATGACTTGCACCTAATACCATGA
244 TCAGAAATGAAAATTTGA-TTTTTTGAGCTCCAAAATACTTCATGA-TTTCACCTAACACCA-GA
* * * ** * * * * *
45899 AAACTGAAAACTAACACCGGTTATCATTTTTCTGTGTTTGAGCGAGTTTAAAACTATTCATTTCT
306 AAAATTAAAACCAATGCAGGTTATCATGTTTCTGTGATTGAGCAAGTTTAAAACTATTCATTTCC
*
45964 ATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTCGACTACAGCATAAATGGTTTCC
371 ATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTCGACTACAGTATAAATGGTTTCC
* * *
46029 AAAACAAAACGAAAAAGCTTCAAAGGCA
436 AAAGCAAAACGTAAAAGCTTCAAAAGCA
* ** * * * * *
46057 TCGAGCTTTTAGTTTGTGCGTAACATATAAAAAAAAGTTAGTACACAGTTAATTGAATCAAGCTC
1 TCGAGCTTTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGC
*
46122 CAATAACGATTTCACAAATGACATCCAAATATCAACAACATCCCACAAATTCCCTGGAGCACCCA
66 CAATAACGATTTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTGGAGCACCCA
* * *
46187 TGAATTCTCCTAAAAATGCATCCAAAGAAAATAAGCATGAAAAATTAAAATCGTGCCAACA-GTT
131 TGAATTCTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTG-CAA-ATGTT
* * * *
46251 TTTATATCACAATTTG-GAATTGTGCAAATGGTTTTTATGCCCATAATTGTTCAAAAACGAAATT
194 TTTATATCACAATTTGAG-ATTGTGCAGATGGTTTTTATGCCCATAATTGTTCAGAAATGAAAAT
* * * * * * ** *
46315 TTTATATTTTCAGCTCCAAAATCCTTCATGACTTAT-ACTTAGCACTGTGAGAAATTAAAACCAA
258 TTGATTTTTTGAGCTCCAAAATACTTCATGA-TT-TCACCTAACAC-CAGAAAAATTAAAACCAA
*
46379 TGCAGGTTATCATGTTTCTGTGATTGAGCAAGTTTAAAACTACTCATTTCCATTTAAAAACTTTC
320 TGCAGGTTATCATGTTTCTGTGATTGAGCAAGTTTAAAACTATTCATTTCCATTTAAAAACTTTC
* ** * * * * *
46444 TGAAAGTACATTTCATAGTTTTAAAGCTTGACAACAGCATAAATGGTTTCCAATGCAAAACGTAA
385 TAAAACAACATTTCATACTTTTAAAGCTCGACTACAGTATAAATGGTTTCCAAAGCAAAACGTAA
46509 AAGCTTCAAAAG-A
450 AAGCTTCAAAAGCA
*
46522 GTCGAGCATTGAGTTTGTG
1 -TCGAGCTTTGAGTTTGTG
46541 TGTCAATAAG
Statistics
Matches: 2194, Mismatches: 444, Indels: 313
0.74 0.15 0.11
Matches are distributed among these distances:
440 2 0.00
441 209 0.10
442 163 0.07
443 3 0.00
446 1 0.00
447 1 0.00
449 4 0.00
450 1 0.00
451 1 0.00
455 1 0.00
456 5 0.00
459 6 0.00
460 9 0.00
461 9 0.00
462 25 0.01
463 32 0.01
464 135 0.06
465 452 0.21
466 447 0.20
467 309 0.14
468 38 0.02
469 44 0.02
470 142 0.06
471 28 0.01
472 9 0.00
473 32 0.01
474 21 0.01
475 8 0.00
476 12 0.01
477 17 0.01
478 17 0.01
479 3 0.00
480 5 0.00
481 3 0.00
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (463 bp):
TCGAGCTTTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGC
CAATAACGATTTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTGGAGCACCCA
TGAATTCTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGTTTT
TATATCACAATTTGAGATTGTGCAGATGGTTTTTATGCCCATAATTGTTCAGAAATGAAAATTTG
ATTTTTTGAGCTCCAAAATACTTCATGATTTCACCTAACACCAGAAAAATTAAAACCAATGCAGG
TTATCATGTTTCTGTGATTGAGCAAGTTTAAAACTATTCATTTCCATTTAAAAACTTTCTAAAAC
AACATTTCATACTTTTAAAGCTCGACTACAGTATAAATGGTTTCCAAAGCAAAACGTAAAAGCTT
CAAAAGCA
Found at i:45164 original size:466 final size:461
Alignment explanation
Indices: 44018--46518 Score: 1768
Period size: 466 Copynumber: 5.4 Consensus size: 461
44008 TAACTTTCAA
* * * *
44018 CTAACACTGTGAAAACTTAAAACCAAAGCAGGTTATCATTTTTCTGTGTTTGAGTGAGTTTAAAA
1 CTAACAC-ATGAAAAATTAAAACCAATGCAGGTTATCATTTTTCTGTGTTTGAGCGAGTTTAAAA
* * * * *
44083 CTATTTATTTCCATTTAAAAACTTTCTAAAACAATATTTCATACTTTTAAAACTCGACCACATCA
65 CTATTCATTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTCGA-CTCAGCA
* * **
44148 TAAATGATTTCCAAAGCAAAACGTAAAAGCTTCAAAGGCGTTGAGCTTTTAGTTTGTGCGTAACA
129 TAAATG-TTTCCAAAGCAAAAC-TAAAAGCTTCAAA-GCG-TCAGCTTTCAGTTTGTGCGTAATG
* * * *
44213 TATAAAAAGAA-TTAGCACACAGTTAATCGCATC-AAGCCCCAATAATGATTTCACAAATGACAT
190 TATAAAAACAAGTTAGCACACAGTTAATCACATCAAAGCGCCAATAACGATTTCACAAATGACAT
*
44276 CCAAATATCAACAGCATCCCACAAATTCCCTGGAGCACCAATGAATTGTCCTAAAAATGCATCTA
255 CCAAATATCAACAGCATCCCACAAATTCCCTGGAGCACCCATGAATTGTCCTAAAAATGCATCTA
* *
44341 AAGCAAATAAGCATGAAAAATTAAAACCATGCAAATGGATTTTATATCACAATTTGAGATTGTGC
320 AAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATATCACAATTTGAGATTGTGC
* * *
44406 AGATGGTTTTTATGCCCATAATTGTTCATAAACGAAATTTTCATATTTTCAGCTACAAAATCCTT
385 AGATGGTTTTTAGGCCCATAATTGCTCAGAAACGAAATTTTCATATTTTCAGCTACAAAATCCTT
*
44471 AATGACTTTCAC
450 AATGACTTGCAC
* * * *
44483 TTAAAACCATGAGAAATTAAAACCAATGCAGGTTATCATGTTTT-TGTGATTGAGCGAGTTTAAA
1 CTAACA-CATGAAAAATTAAAACCAATGCAGGTTATCAT-TTTTCTGTGTTTGAGCGAGTTTAAA
* * * *
44547 CCTACTCATTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTTGACTACAGG
64 ACTATTCATTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTCGACT-CAGC
* * * * * *
44612 ATAAGTGGTTTCCAAAGCAAAACTTAAATGTTTCAAAAGAGTCGAGCTTTGAGTTTGTTCGTAAT
128 ATAAAT-GTTTCCAAAGCAAAAC-TAAAAGCTTC-AAAGCGTC-AGCTTTCAGTTTGTGCGTAAT
* *
44677 GTATAAGAACAAGTTAGCACACAGTTAATCCCATCAAAGCGCCAATAACGATTTCACAAATGACA
189 GTATAAAAACAAGTTAGCACACAGTTAATCACATCAAAGCGCCAATAACGATTTCACAAATGACA
* *
44742 TTCAAATATCAACAGCATCCCACAAATTCCCTTGAGCACCCATGAATTGTCCTAAAAATGCATCT
254 TCCAAATATCAACAGCATCCCACAAATTCCCTGGAGCACCCATGAATTGTCCTAAAAATGCATCT
* * * *
44807 AAAGCAAATAA-CATGAAAAATTAAAACCGTTCAAATGGTTTTTATATCAGAATTTGAGATGGGG
319 AAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATATCACAATTTGAGATTGTG
* * * * * *
44871 CAGATCGTTTTTAGGCTCATAATTGCTCAGAAATGAAATTTTGATATTTTTAGCTCCAAAATCCT
384 CAGATGGTTTTTAGGCCCATAATTGCTCAGAAACGAAATTTTCATATTTTCAGCTACAAAATCCT
*
44936 TCATGACTTGCAC
449 TAATGACTTGCAC
* * * *
44949 CTAACAC-TGAAAAATTAAAACCAATGCAAGTTATCATTTTTCTATGTTTTAGCGAATTTAAAAC
1 CTAACACATGAAAAATTAAAACCAATGCAGGTTATCATTTTTCTGTGTTTGAGCGAGTTTAAAAC
*
45013 TATTCATTTCCATTTAAAAACTTACTAAAACAACATTTCATA-TATTTAAAGCTCGACTCTAGCA
66 TATTCATTTCCATTTAAAAACTTTCTAAAACAACATTTCATACT-TTTAAAGCTCGACTC-AGCA
* * * * * *
45077 GAAATAGTTTCGAAAGTAAAACATAAAAAGCTTCGAAAGCGTCACACTTTCAATTTGTGCATAAT
129 TAAAT-GTTTCCAAAGCAAAAC-T-AAAAGCTTC-AAAGCGTCA-GCTTTCAGTTTGTGCGTAAT
* * *
45142 GTATAAAAACAAGTTAAGCACACATTTAATCACATCAAAGCGCGAATAACCATTTCACAAATGAC
189 GTATAAAAACAAGTT-AGCACACAGTTAATCACATCAAAGCGCCAATAACGATTTCACAAATGAC
* * * *
45207 ATCCAAATATCAACCGCATCCCAAAAATTCCCTGGAGCACCCATGAATTCTCCTAAAAAGGCAGT
253 ATCCAAATATCAACAGCATCCCACAAATTCCCTGGAGCACCCATGAATTGTCCTAAAAATGCA-T
* ** * * * *
45272 -TGAAGCAAATAAGTGTGAAAAATTATAACCGTGCAATTGGTTTTAATATCACAATTTTAGATTG
317 CTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATATCACAATTTGAGATTG
* ** * ** * *
45336 TGCAGATGGTTTTTA----TATTTTTAGCTCCA-AATA-AAAACCGTTCAAATGGTTTTTA--TA
382 TGCAGATGGTTTTTAGGCCCATAATT-GCT-CAGAA-ACGAAA-TTTTC--AT-ATTTTCAGCTA
* * * **
45393 TCAGAAT--TTGA-GA-TGGGGC
440 -CAAAATCCTTAATGACTTGCAC
** * *** ** *** * * **** ** * * * * **
45412 AGATCGTTTTTAGGCTCATAATTGCT-CA-GAAATGAAATTTTCATAT-TTTTAGC---TCCAAA
1 CTAACACATGAAAAATTAAAACCAATGCAGGTTAT-CATTTTTC-TGTGTTTGAGCGAGTTTAAA
* ** * * * *** * * * *
45471 A-TACTTTCATCACTTGCACCTAACACCGTGAAAAATTAAAACCAATGTAGGTTATCATTTTTCT
64 ACTA--TTCAT---TTCCATTTAAAAACTTTCTAAA--ACAA-C-AT-T---TCAT-ACTTTT-A
** * * * * *** ** * **
45535 GTGTTTGAGC-GAGCTTCAAA-GTATT-CATTTC-AATTTAAAAAG-TTGCTAAAACAACA--TT
114 AAGCTCGA-CTCAGCAT-AAATGT-TTCCAAAGCAAAACT-AAAAGCTT-C-AAAGCGTCAGCTT
* * * * * * * * * * * * *
45593 TCATAATTTTTAAAGCTTGA-CTACAGCATAAA-TAGTT-TC-CAAAG-CAA-AACATAAAAGCA
173 TC--AGTTTGT---GCGTAATGTATA--A-AAACAAGTTAGCACACAGTTAATCACATCAAAGCG
* ** ** **
45652 TCAA-AACCG---TCGAGC-TTTGAGTTTGTGCGTAATATCAACAGCATCCCACAAATTCCC-GG
230 CCAATAA-CGATTTC-A-CAAATGA---CAT-CCAAATATCAACAGCATCCCACAAATTCCCTGG
* * * * * * * * * *
45711 AGCACCCATAAATTCTCCTAAAAAATTCAGCTGAAGGAAACAAGCATGAAAAATAAAAATCATGC
288 AGCACCCATGAATTGTCCT-AAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGC
* * * * * * *
45776 AAATGATTTTTATATCGCAATTTTAGATTATGCATATGGTTTTTATGCCCATAATTGTTCAGAAA
352 AAATGGTTTTTATATCACAATTTGAGATTGTGCAGATGGTTTTTAGGCCCATAATTGCTCAGAAA
* * * * * * * * * *
45841 TGAAATTTTGATTTTTTTTAACTCCTAAGTACTTCATGACTTGCAC
417 CGAAATTTTCA-TATTTTCAGCTACAAAATCCTTAATGACTTGCAC
* * * * ** *
45887 CTAATACCATGAAAACTGAAAACTAACACCGGTTATCATTTTTCTGTGTTTGAGCGAGTTTAAAA
1 CTAACA-CATGAAAAATTAAAACCAATGCAGGTTATCATTTTTCTGTGTTTGAGCGAGTTTAAAA
*
45952 CTATTCATTTCTATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTCGACTACAGCA
65 CTATTCATTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTCGACT-CAGCA
* * * * **
46017 TAAATGGTTTCCAAAACAAAACGAAAAAGCTTCAAAGGCATCGAGCTTTTAGTTTGTGCGTAACA
129 TAAAT-GTTTCCAAAGCAAAAC-TAAAAGCTTCAAA-GCGTC-AGCTTTCAGTTTGTGCGTAATG
* * * *
46082 TATAAAAAAAAGTTAGTACACAGTTAATTGA-ATC-AAGCTCCAATAACGATTTCACAAATGACA
190 TATAAAAACAAGTTAGCACACAGTTAA-TCACATCAAAGCGCCAATAACGATTTCACAAATGACA
* * *
46145 TCCAAATATCAACAACATCCCACAAATTCCCTGGAGCACCCATGAATTCTCCTAAAAATGCATCC
254 TCCAAATATCAACAGCATCCCACAAATTCCCTGGAGCACCCATGAATTGTCCTAAAAATGCATCT
* * * **
46210 AAAGAAAATAAGCATGAAAAATTAAAATCGTGCCAACAGTTTTTATATCACAATTTG-GAATTGT
319 AAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATATCACAATTTGAG-ATTGT
* * * * * *
46274 GCAAATGGTTTTTATGCCCATAATTGTTCAAAAACGAAATTTTTATATTTTCAGCTCCAAAATCC
383 GCAGATGGTTTTTAGGCCCATAATTGCTCAGAAACGAAATTTTCATATTTTCAGCTACAAAATCC
* **
46339 TTCATGACTTATAC
448 TTAATGACTTGCAC
* * * * * * *
46353 TTAGCACTGTGAGAAATTAAAACCAATGCAGGTTATCATGTTTCTGTGATTGAGCAAGTTTAAAA
1 CTAACAC-ATGAAAAATTAAAACCAATGCAGGTTATCATTTTTCTGTGTTTGAGCGAGTTTAAAA
* * ** * * *
46418 CTACTCATTTCCATTTAAAAACTTTCTGAAAGTACATTTCATAGTTTTAAAGCTTGACAACAGCA
65 CTATTCATTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTCGAC-TCAGCA
*
46483 TAAATGGTTTCCAATGCAAAACGTAAAAGCTTCAAA
129 TAAAT-GTTTCCAAAGCAAAAC-TAAAAGCTTCAAA
46519 AGAGTCGAGC
Statistics
Matches: 1565, Mismatches: 358, Indels: 225
0.73 0.17 0.10
Matches are distributed among these distances:
459 2 0.00
460 5 0.00
461 5 0.00
462 3 0.00
463 30 0.02
464 155 0.10
465 219 0.14
466 446 0.28
467 313 0.20
468 59 0.04
469 54 0.03
470 135 0.09
471 16 0.01
472 23 0.01
473 25 0.02
474 20 0.01
475 5 0.00
476 22 0.01
477 13 0.01
478 3 0.00
479 5 0.00
480 5 0.00
481 2 0.00
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (461 bp):
CTAACACATGAAAAATTAAAACCAATGCAGGTTATCATTTTTCTGTGTTTGAGCGAGTTTAAAAC
TATTCATTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTCGACTCAGCATA
AATGTTTCCAAAGCAAAACTAAAAGCTTCAAAGCGTCAGCTTTCAGTTTGTGCGTAATGTATAAA
AACAAGTTAGCACACAGTTAATCACATCAAAGCGCCAATAACGATTTCACAAATGACATCCAAAT
ATCAACAGCATCCCACAAATTCCCTGGAGCACCCATGAATTGTCCTAAAAATGCATCTAAAGCAA
ATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATATCACAATTTGAGATTGTGCAGATGG
TTTTTAGGCCCATAATTGCTCAGAAACGAAATTTTCATATTTTCAGCTACAAAATCCTTAATGAC
TTGCAC
Found at i:47573 original size:466 final size:463
Alignment explanation
Indices: 46667--48934 Score: 2633
Period size: 466 Copynumber: 4.9 Consensus size: 463
46657 AAACCATGCA
* * * * * * *
46667 AATGCAGGTAATCATTTTTCTGTGATTGAGCTAGTTTAAAACTATTTATTTCAAATTAAAAACGT
1 AATGCAGGTTATCATTTTTCTGTGTTTGAGCGAGTTTAAAACTATTCATTTCCATTTAAAAACTT
* * * * * * *
46732 ACTAAAATAACATTTCATACATTTAAAACTTGACTCCAGTAGAAATGGTTTCGAAAGCAAAACGT
66 ACTAAAACAACATTTCATACTTTTAAAGCTCGACTCCAGCAGAAATGGTTTCCAAAGCAAAACAT
* *
46797 AAAA-CTTCAAAAGTGTCAAGCTTTGAGTTTGTGCCTAATGTATAAAAACAAGTTAGCATACAGT
131 AAAAGCTTCAAAAGTGTCAAGCTTTGAGTTTGTG-CGAATGTATAAAAACAAGTTAGCACACAGT
*
46861 TAATCGCATCAAAGCGCCAATAACGATTTCACAAATGACATCCAAATATAAACAGCATCTCACAA
195 TAATCGCATCAAAGCGCCAATAACGATTTCACAAATGACATCCAAATATCAACAGCATC-CAC-A
* * *
46926 AATCCCTGGAGCACCCATGAATTGTCCTAAAAATGCATCTAACGCATATAAGCATGAAAAATTAA
258 AATCCCTGGAGCACCCATGAATTCTCCT-AAAATGCATCTAAAGCAAATAAGCATGAAAAATTAA
* * * * *
46991 AACTGTGCAAATGGCTTTTATATCACAATTTGAGATTGAGCAGATGGTTTTTCTGCCCATAATTG
322 AACCGTGCAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATGGTTTTTATGCCCATAATTG
* *
47056 TTCAGAAGA-GAAATTTTGATATTTTTAGCTCCAAAATCCTTCATCACTTGCACCTAACACCGTA
387 TTCAGAA-ACGAAATTTTGATATTTTCAGCTCCAAAATCCTTCATGACTTGCACCTAACACCGTA
47120 AAAAATTAAAACC
451 AAAAATTAAAACC
* * *
47133 AATGCAAGTTATCATTTTTCTGTGTTTTAGCGAGTTTAAAACTATTCATTTCCCTTTAAAAACTT
1 AATGCAGGTTATCATTTTTCTGTGTTTGAGCGAGTTTAAAACTATTCATTTCCATTTAAAAACTT
* * *
47198 ACTAAAACAACATTTTCGTAGTTTTAAAGCTCGACTCCAGCAGAAATGGTTTCCAAAGCAACACA
66 ACTAAAACAACA-TTTCATACTTTTAAAGCTCGACTCCAGCAGAAATGGTTTCCAAAGCAAAACA
** * * *
47263 TAAAAAGCTTCAAAAGTGTTGAGCTTTGAGTTTGTGCGCATGTATAAAAACAAGTAAGCACACAT
130 T-AAAAGCTTCAAAAGTGTCAAGCTTTGAGTTTGTGCGAATGTATAAAAACAAGTTAGCACACAG
* * *
47328 TTAATCGCATCAAAGTGCCAATAACAATTTGACAAATGACATCCAAATATCAACAGCATCCAACA
194 TTAATCGCATCAAAGCGCCAATAACGATTTCACAAATGACATCCAAATATCAACAGCATCC-ACA
* * * *
47393 AATCGCATGGTGCACCCATGAATTCT-C-AAAATGCATCTAATGCAAATAAACATGAAAAATTAA
258 AATC-CCTGGAGCACCCATGAATTCTCCTAAAATGCATCTAAAGCAAATAAGCATGAAAAATT-A
* * * *
47456 AAACCATGCAAATTGTTTTTATATCACAATTTGAGA-TGTTGCATATGGTTTTTATGCCCATAAA
321 AAACCGTGCAAATGGTTTTTATATCACAATTTGAAATTG-TGCAGATGGTTTTTATGCCCAT-AA
* * * * * * **
47520 TT-TTCAGAAATGAAATTTTGATTTTTTTAACTGCAAAATACTTCATGACTTGCACCTAACATTG
384 TTGTTCAGAAACGAAATTTTGATATTTTCAGCTCCAAAATCCTTCATGACTTGCACCTAACACCG
*
47584 TGAAAAATTAAAACC
449 TAAAAAATTAAAACC
* * *
47599 AA--C--G----CA---------GATTAAGCGAGTTTAAAA-TAATCATTTCCATTTAAAAACTT
1 AATGCAGGTTATCATTTTTCTGTGTTTGAGCGAGTTTAAAACTATTCATTTCCATTTAAAAACTT
* * * * * *
47646 TCTAAAATAACATTTCATACTTTTAAAGCTCGACTACAGCATAAATGGTTTCCAAACCAAAACGT
66 ACTAAAACAACATTTCATACTTTTAAAGCTCGACTCCAGCAGAAATGGTTTCCAAAGCAAAACAT
* * * * * *
47711 AAAAGCTTTAAAAGTGTCGAGCTATGAGTTTGTGCATAATGTATAAAAAGAAGTTAGCA-TC---
131 AAAAGCTTCAAAAGTGTCAAGCTTTGAGTTTGTGC-GAATGTATAAAAACAAGTTAGCACACAGT
47772 T--T---ATC-AAGCGCCAATAACGATTTCACAAATG--ATCCAAATATCAACAGCATTCCACAA
195 TAATCGCATCAAAGCGCCAATAACGATTTCACAAATGACATCCAAATATCAACAGCA-TCCACAA
* * * * * * *
47829 ATTCCATGCAGCGCCCAAGAATTCTACTAAAAATTCATCTAAAGCAAATAAGTATGAAAAATTAA
259 A-TCCCTGGAGCACCCATGAATTCTCCT-AAAATGCATCTAAAGCAAATAAGCATGAAAAATTAA
* * **
47894 AACCGTGCAAATGGTTTTTATATCACAGTTTGAAATTGGGCAGATGGTTTTTATGCTGATAATTG
322 AACCGTGCAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATGGTTTTTATGCCCATAATTG
* * * * ** * *
47959 TTAAGAAATGAAATTTTGATATTTTCAGCTGCAAAATCCTTCATGACATGTGCCTAATACCATTA
387 TTCAGAAACGAAATTTTGATATTTTCAGCTCCAAAATCCTTCATGACTTGCACCTAACACC-GTA
*
48024 AAAAATTAAAACT
451 AAAAATTAAAACC
* *
48037 AATGCAGGTTATCATTTTTCTGTGTTTGA-C-AGTTTAAAACTATTCATTTCCATTTAAAAGCAT
1 AATGCAGGTTATCATTTTTCTGTGTTTGAGCGAGTTTAAAACTATTCATTTCCATTTAAAAACTT
* * * * ** *
48100 GCTAAAACAACATTTCGTAGTTTTAAAGCTCGACTCCAGTAGAAACAGTTTTCAAAGCAAAACAT
66 ACTAAAACAACATTTCATACTTTTAAAGCTCGACTCCAGCAGAAATGGTTTCCAAAGCAAAACAT
* *
48165 AAAAGATTCAAAAGTGTCAAGCTTTGAGTTTGTGTGTAATGTATAAAAACAAGTTAGCACACAGT
131 AAAAGCTTCAAAAGTGTCAAGCTTTGAGTTTGTGCG-AATGTATAAAAACAAGTTAGCACACAGT
* ** *
48230 TAATCGCAT-TAAGCATCAATAACGATTTCACAAATGGCATCCAAATATCAACAGCATCCCACAA
195 TAATCGCATCAAAGCGCCAATAACGATTTCACAAATGACATCCAAATATCAACAGCAT-CCACAA
* **
48294 ATTTCCTGGAGCACCCATGAATTCTCCTAAAAATGCATCTAAAGCAAATAAGCATGAAAAGCTAA
259 A-TCCCTGGAGCACCCATGAATTCTCCT-AAAATGCATCTAAAGCAAATAAGCATGAAAAATTAA
* * * *
48359 AACCATGGAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATGATTTTTACGCCCATAATTG
322 AACCGTGCAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATGGTTTTTATGCCCATAATTG
* * * * * ** *
48424 TTCAGACACAAAACTTTGATATTTTCAGCCCCAAAATCCTT--TGACTTGCACTTAACACAATGA
387 TTCAGAAACGAAATTTTGATATTTTCAGCTCCAAAATCCTTCATGACTTGCACCTAACACCGTAA
48487 AAAATTAAAACC
452 AAAATTAAAACC
* * * * *
48499 AAAGCAGGTTATCATGTTTCTGTGTTTGAGGGAGTTTAAAACTATTAATTTCCATTTTTAGAAAC
1 AATGCAGGTTATCATTTTTCTGTGTTTGAGCGAGTTTAAAACTATTCATTTCCA--TTTAAAAAC
* * * *
48564 TTGCTAAAACAGCATTTTATACTTTTAAAGCTCGACTCCAGCAGAAATGGTTTTCAAAGCAAAAC
64 TTACTAAAACAACATTTCATACTTTTAAAGCTCGACTCCAGCAGAAATGGTTTCCAAAGCAAAAC
* * * *
48629 ATAAAAGATTCAAAAGCGTTAAGCTTTGAGTTTGTGTGTAATGTATAAAAACAAGTTAGCACATC
129 ATAAAAGCTTCAAAAGTGTCAAGCTTTGAGTTTGTGCG-AATGTATAAAAACAAGTTAGCACA-C
** *
48694 -GTTAATCGCATCAAA-CGCCAATAGTGATTTCAGAAATGACATCCAAATATCAACAGCATCTCA
192 AGTTAATCGCATCAAAGCGCCAATAACGATTTCACAAATGACATCCAAATATCAACAGCATC-CA
* * * * * *
48757 CAAATTCCCCGGAGAAACTATGAATTCTCCTATAAATGCATCTAAAGCAAATATGAATGAAAAAT
256 CAAA-TCCCTGGAGCACCCATGAATTCTCCTA-AAATGCATCTAAAGCAAATAAGCATGAAAAAT
** *
48822 TAAAACCGTGCAAATGGTTTTTATGCCACAATTTGACATTGTGCAGATGGTTTTTATGCCCATAA
319 TAAAACCGTGCAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATGGTTTTTATGCCCATAA
* *
48887 CTGTTCAGAAACGAAATTTTGATATTTTCAACTCCAAAATCCTTCATG
384 TTGTTCAGAAACGAAATTTTGATATTTTCAGCTCCAAAATCCTTCATG
48935 TGCAGATGGT
Statistics
Matches: 1530, Mismatches: 212, Indels: 118
0.82 0.11 0.06
Matches are distributed among these distances:
435 40 0.03
436 10 0.01
437 124 0.08
438 50 0.03
440 1 0.00
441 1 0.00
442 1 0.00
443 1 0.00
446 35 0.02
447 65 0.04
448 31 0.02
449 16 0.01
453 9 0.01
454 125 0.08
455 5 0.00
458 3 0.00
460 1 0.00
462 41 0.03
463 38 0.02
464 23 0.02
465 206 0.13
466 513 0.34
467 58 0.04
468 106 0.07
469 27 0.02
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (463 bp):
AATGCAGGTTATCATTTTTCTGTGTTTGAGCGAGTTTAAAACTATTCATTTCCATTTAAAAACTT
ACTAAAACAACATTTCATACTTTTAAAGCTCGACTCCAGCAGAAATGGTTTCCAAAGCAAAACAT
AAAAGCTTCAAAAGTGTCAAGCTTTGAGTTTGTGCGAATGTATAAAAACAAGTTAGCACACAGTT
AATCGCATCAAAGCGCCAATAACGATTTCACAAATGACATCCAAATATCAACAGCATCCACAAAT
CCCTGGAGCACCCATGAATTCTCCTAAAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACC
GTGCAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATGGTTTTTATGCCCATAATTGTTCA
GAAACGAAATTTTGATATTTTCAGCTCCAAAATCCTTCATGACTTGCACCTAACACCGTAAAAAA
TTAAAACC
Found at i:50184 original size:466 final size:465
Alignment explanation
Indices: 49083--57298 Score: 4127
Period size: 466 Copynumber: 17.6 Consensus size: 465
49073 CACGCAAATT
* * * *
49083 GTTTTTATGCCTATAATTGTTCAGACAGGAAATTTTGATATTTTCAGA--CCAAAATCCTTCATC
1 GTTTTTATGCCCATAATTGTTCAGAAATGAAATTTTGATATTTTCA-ACTCCAAAATCCTTCATG
* * * * *
49146 ACATGCA-TCTAACAC-CGTCAAAAATTAAAACAAATGCAAGTTATCATTTTTCTGTGTTTGAGC
65 ACTTGCACT-TAACACACG--AAAAATTAAAACCAATGCAGGTTATCATGTTTCTGTGATTGAGC
* *** * *
49209 GAGTTGAAAACTATTCATTTCCATTTAAAAACAAGCTAAAAGAACATTCCATACTTTTAAAGCTC
127 GAGTTTAAAACTATTCATTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTC
* * * *
49274 GACTCCAGTAGAAATGGTTTCCAAGGCAAAACATAAAAGCTTCAAAAGCGTCGAGCTTTGAGTTT
192 GACTACAGCAGAAATGGTTTCCAAAGCAAAACGTAAAAGCTTCAAAAGCGTCGAGCTTTGAGTTT
* * * ** * *
49339 GTGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCACATCAACCTTCAATCACAATTTCAC
257 GTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCAATAACGATTTCAC
* * * * * * * * **
49404 AAATGATATCCAAATACCAACGGCATCCCACAAATTCACTGGAGAACCCACGACTTTCTGCAAAA
322 AAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTAGAGCACCCATGA-ATTCT-CCTAA
* *
49469 AAATGCATCTAAAGCAGAA-AAGAATGAAAAACTAAAACCATGCAAATGGTTTTTATATCACAAT
385 AAATGCATCTAAAGCA-AATAAGCATGAAAAATTAAAACCATGCAAATGGTTTTTATATCACAAT
* * *
49533 TTGAAATTGTGTAGAAG
449 TTGAGATTGTGCAGATG
* * * * *
49550 GTTTTTATGCCCATAATTCTTCAGAAACGAAATTTTGATATTTTCATCTCCAAAATCCTCCATTA
1 GTTTTTATGCCCATAATTGTTCAGAAATGAAATTTTGATATTTTCAACTCCAAAATCCTTCATGA
* * * * * *
49615 CCTACACTAAACACCATGAAAAATTAAATCCAATGCAGGTTATCATGTTTCTATGATTGAGCGAG
66 CTTGCACTTAACA-CACGAAAAATTAAAACCAATGCAGGTTATCATGTTTCTGTGATTGAGCGAG
* * * *
49680 TTTAAAACTATTCATTTCAATTTTAAGACTTTCTAAAACAACATTTCATACTTTTAGAGCTCGAC
130 TTTAAAACTATTCATTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTCGAC
* * * * *
49745 TACAGTATAATTGGTTTCCAAAGCAAAACGTAAAAGTTTCAAAAGCGTTGAGCTTTGAGTTTGTG
195 TACAGCAGAAATGGTTTCCAAAGCAAAACGTAAAAGCTTCAAAAGCGTCGAGCTTTGAGTTTGTG
* * * *
49810 CATAATGTATAAAAACAAGTTAGTACACAGTTAATTGCATCAAGCGCCAAAAACGATTTCACAAA
260 CGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCAATAACGATTTCACAAA
* *
49875 TGACATCAAAATATCAACAGCATCCCACAAATTCCCTAGAGCACCCATGAAGTCTCCTAAAAATG
325 TGACATCCAAATATCAACAGCATCCCACAAATTCCCTAGAGCACCCATGAATTCTCCTAAAAATG
* * * * *
49940 CATCCAAAGCAAATAAGTATGGAAAATTAAAA-CAGTGCAGATGGTTTTTATATCACAATTTGAA
390 CATCTAAAGCAAATAAGCATGAAAAATTAAAACCA-TGCAAATGGTTTTTATATCACAATTTGAG
*
50004 ATTGTGCACATG
454 ATTGTGCAGATG
* * * ** *
50016 GTTCTTATGTCCATAATTGTTGAGAAGCGAAATTTTGATATTTTCATCTCCAAAATCCTTCATGA
1 GTTTTTATGCCCATAATTGTTCAGAAATGAAATTTTGATATTTTCAACTCCAAAATCCTTCATGA
* * * *
50081 CTTACACTTAACACAACGAAACATTAAAACTAATGCAAGTTATCATGTTTCTGTGATTGAGCGAG
66 CTTGCACTTAACAC-ACGAAAAATTAAAACCAATGCAGGTTATCATGTTTCTGTGATTGAGCGAG
* * **
50146 TTTAAAACTATTCATTTCTATTTAAAAACTTGCTAAAACAACATTTCATACTTTTAAAGCTTAAC
130 TTTAAAACTATTCATTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTCGAC
* * * *
50211 TATAGCAGAACTGGTTTCCAAAGCAAAACGTAAAAGCTTCAAAAGCGTTGAGGTTTGAGTTTGTG
195 TACAGCAGAAATGGTTTCCAAAGCAAAACGTAAAAGCTTCAAAAGCGTCGAGCTTTGAGTTTGTG
* * ** * * *
50276 CGTGATGTATAAAAAACATA-TTAGCGCACAGTTAATCGTGTCAAAGCGCCGACAACAATTTCAC
260 CGTAATGTAT-AAAAACA-AGTTAGCACACAGTTAATCGCATC-AAGCGCCAATAACGATTTCAC
* * * *
50340 AAATGGCATCTAAATATCAATAGCATCCCACAAATTCCCT--A--A---A-G------GC-----
322 AAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTAGAGCACCCATGAATTCTCCTAAAA
* * * * * *
50386 A-G--TC-GAAGCAAAAAAGCAGGAAAAATTTAAACCGTGCAAATGGTTTTTATATCATAATTTG
387 ATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCATGCAAATGGTTTTTATATCACAATTTG
50447 AGATTGTGCTA-ATG
452 AGATTGTGC-AGATG
* * * * * **
50461 GTTTTTATGCCCATAACTATTTATAAATGAAATTTTGATATTTTGAACTTGAAAATCCTTCATGA
1 GTTTTTATGCCCATAATTGTTCAGAAATGAAATTTTGATATTTTCAACTCCAAAATCCTTCATGA
*
50526 CTTGAACTTAACAC-CGGTAAAAATTAAAACCAATGCAGGTTATCAT-TATTCTGT--TTGTAAG
66 CTTGCACTTAACACAC-G-AAAAATTAAAACCAATGCAGGTTATCATGT-TTCTGTGATTG--AG
* * * *
50587 CGAGTTTAAAACTATTCATTTACATTTAAAAACGTACTAAAACAACATTTCTTACTTTTAAAGCT
126 CGAGTTTAAAACTATTCATTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCT
* * * * * * * * * *
50652 TGACTCCAGCAGAAATGGTTTTCAAAGCAAACCATGAAA-CTTGAAAAGCATCAAGCTTTGACTT
191 CGACTACAGCAGAAATGGTTTCCAAAGCAAAACGTAAAAGCTTCAAAAGCGTCGAGCTTTGAGTT
* * * ** *
50716 TGTGCGTAATTTATAAAAACAAGTTGGCACGCAGTTAATCGTGTCAAGCGCCAATAATGATTTCA
256 TGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCAATAACGATTTCA
* *
50781 CAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTAGAGCACCAATTAATTCTCCTAAA
321 CAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTAGAGCACCCATGAATTCTCCTAAA
* * * *
50846 AATGCATGTAAAGCAAATAAACATGAAAAATTAAAACCATGCGAATGATTTTTATATCACAATTT
386 AATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCATGCAAATGGTTTTTATATCACAATTT
*
50911 GAAATTGTGCAGATG
451 GAGATTGTGCAGATG
* * * * *
50926 GTTTTTATGCCGATAATTGTTAAGAAATGAAAATTTGATATTTTCAGCTCTAAAATCCTTCATGA
1 GTTTTTATGCCCATAATTGTTCAGAAATGAAATTTTGATATTTTCAACTCCAAAATCCTTCATGA
* * * * * *
50991 CATGCACCTAACAC-CGTGGAAAATTAAAAACCAATGCAGGTTA-CAT-TTTTTGTGTTTGAGTG
66 CTTGCACTTAACACAC--GAAAAATT-AAAACCAATGCAGGTTATCATGTTTCTGTGATTGAGCG
* * * *
51053 AGTTTAAAACTATTCATTTCCATTTAAAAACTTACTAAAACAACGTTCCATACTTTTAAAGCTCA
128 AGTTTAAAACTATTCATTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTCG
* **
51118 ACTCCAGCAGTTATGGTTTCCAAAG-----C------G--T--------T-GAGCTTTGAGTTTG
193 ACTACAGCAGAAATGGTTTCCAAAGCAAAACGTAAAAGCTTCAAAAGCGTCGAGCTTTGAGTTTG
* * * * * *
51161 TGTGTAATGAATAAAAACAAG-TAACAACCCAGTTAATCGCATCAAAACGCCAATAACGATTTCT
258 TGCGTAATGTATAAAAACAAGTTAGC-ACACAGTTAATCGCATC-AAGCGCCAATAACGATTTCA
** * * * * *
51225 CAAATGACATTTAAATATCAACAG-ATCCAACAAATTCCTTGGAGCACCCATGAATTCCCCTGAA
321 CAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTAGAGCACCCATGAATTCTCCTAAA
* * * *
51289 AATGCATCTAAAGCAAATGAGCATGAAAAATAAAAATCATGCAAATGGTTTTTATATCCCAATTT
386 AATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCATGCAAATGGTTTTTATATCACAATTT
51354 GAGATTGTGCAGATG
451 GAGATTGTGCAGATG
* * * * * *
51369 GTTTTTATGCCCAGAATTGTTCAGAAATGAAGTTTTAATTTTTTTAACTCCAAAATACTTCATGA
1 GTTTTTATGCCCATAATTGTTCAGAAATGAAATTTTGATATTTTCAACTCCAAAATCCTTCATGA
* * * * ** * * *
51434 CTTGCACCTAACACCAAGAAAAATTAATACCAACGCATCTTATCCTGTTTCTGTGAGTCAGCGAG
66 CTTGCACTTAACA-CACGAAAAATTAAAACCAATGCAGGTTATCATGTTTCTGTGATTGAGCGAG
*
51499 TTTAAAACTATTCATTTCCATTAAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTCGAC
130 TTTAAAACTATTCATTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTCGAC
* * * *
51564 TACAGCATAAATGGTTTCCAAAGCAAAACGTAAAAGCTTCAAAAGAGTCGAGCTTTGATTTTGGG
195 TACAGCAGAAATGGTTTCCAAAGCAAAACGTAAAAGCTTCAAAAGCGTCGAGCTTTGAGTTTGTG
* * *
51629 CGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCTCCAATAATGATTTCGCAAA
260 CGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCAATAACGATTTCACAAA
* *
51694 TAACATCCAAATATCAACAGCATCCCACAAATTCCCTAAAGCACCCATGAATTACT-CTAAAAAT
325 TGACATCCAAATATCAACAGCATCCCACAAATTCCCTAGAGCACCCATGAATT-CTCCTAAAAAT
* *
51758 TC-TGC-AGAAGCAAATAAGCATGAAAAATAAAAACCATGCAAATGGTTTTTATATCACAATTTG
389 GCAT-CTA-AAGCAAATAAGCATGAAAAATTAAAACCATGCAAATGGTTTTTATATCACAATTTG
*
51821 AGATTGTGCATATGG
452 AGATTGTGCAGAT-G
* * * * * * *
51836 GTTTTTTTGCCCATAATTGTTCAGAAATTAAAAATTTTGATTTTTTTAACTCTAAAATACTTCGT
1 GTTTTTATGCCCATAATTGTTCAGAAA-T-GAAATTTTGATATTTTCAACTCCAAAATCCTTCAT
** * * **
51901 GACTTGCA-TCTAACACTGTGAAAAA-TAAAACCAACGCAGGTTATCATATTTCTAAGATTGAGC
64 GACTTGCACT-TAACAC-ACGAAAAATTAAAACCAATGCAGGTTATCATGTTTCTGTGATTGAGC
* *
51964 GAGTTTAAAACTATTCATTTCCATTTAAAAACTTTCTAAAACAAGATTTCATACTTTTAAAGCTT
127 GAGTTTAAAACTATTCATTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTC
* * * * *
52029 GACTACAGTATAAATGGATTCCAAAGCAAAACGTAAAAGCTTCAAAAGCATCGAACTTTGAGTTT
192 GACTACAGCAGAAATGGTTTCCAAAGCAAAACGTAAAAGCTTCAAAAGCGTCGAGCTTTGAGTTT
* * * * * *
52094 GTGTGTAATGTATAAAAACAAGTTAGCACACA-TGTAATCACATGAAGCTCCAACAATGATTTCA
257 GTGCGTAATGTATAAAAACAAGTTAGCACACAGT-TAATCGCATCAAGCGCCAATAACGATTTCA
* * * *
52158 CAAATGACGTCCAATTATCAATAGCAT--C-C----TCCCCAGAGCACCCATGAATTCTCC-AAA
321 CAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTAGAGCACCCATGAATTCTCCTAAA
* * * * *
52215 AATACATCTAATGCAAATAAGCAT-AAAAATTAAAACCGTACAAATGGTTTTAATATCACAATTT
386 AATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCATGCAAATGGTTTTTATATCACAATTT
** *
52279 GAGATTGCACATATG
451 GAGATTGTGCAGATG
* * * * * * *
52294 GGTTATATGCCCATAACTGGTCAGAAATGAAATTTTGATTTTTTTAACTCCAAAATACTTCATGA
1 GTTTTTATGCCCATAATTGTTCAGAAATGAAATTTTGATATTTTCAACTCCAAAATCCTTCATGA
* ** * ** * * * *** * *
52359 CTTGCACCTAACACTGTGAAAAATTAAAATCACATAAAGCTCCAATAATGATTTC-ACAAATG-T
66 CTTGCACTTAACAC-ACGAAAAATTAAAACCA-ATGCAGGT--TATCATG-TTTCTGTGATTGAG
** **** * * * * * * * *
52422 C-A--TCCAAA-TA-TCAACAGCATCTCACAAA-TTCCCCGCAGCACCCACGAATTCTCATAAAA
126 CGAGTTTAAAACTATTCATTTCCAT-TTAAAAACTT--TC-TA-AAACAAC--ATT-TCAT--AC
**** * * * * ** * *** * *
52481 TTACATCTAAAGAAAAATTAAAACCGTGCAAATGGTTTTTATATCGCAATTTG-AAATTG-TGCA
181 TT---T-TAAAGCTCGACT-ACAGC-AG-AAATGGTTTCCA-A-AGCAAAACGTAAA-AGCTTCA
* * * * * * * *** * * *
52544 GATG-GTTCTTAGGCTCAT-A-ATTGTTCAGAAATG-A-AATTTTCATATTTTCAGCGC-CAAAT
236 AAAGCG-TC-GA-GCT-TTGAGTTTGTGC-GTAATGTATAA-AAACA-A-GTT-AGCACAC-AGT
* * * ** * ** * * * * * *** * * *
52603 TTAT-TCAT-GA-CTTACACTTAAC-ACCGTGAGAAATTAAAACCCGTGTAGGTTATCATG--TT
291 TAATCGCATCAAGC-GCCA-ATAACGA-TTTCACAAA-TGACATCCAAATA--TCAACA-GCATC
* **** ** * * * * ** *
52662 TCTGTGATTGAGCGAGTTTA-AAACTATTCATT-TCCATTTAAAAA--CATTCTAAAACAACAT-
349 CCACAAATT-CCCTAG---AGCACCCATGAATTCTCC---TAAAAATGCA-TCTAAAGCAA-ATA
*** *** * *** * * ** *
52722 TTTAT--ACTTTTAAAGCTCGACTACAGCATAAATGGTTCCCAAAGT-AAAATGTAAAAGCTT-T
405 AGCATGAAAAATTAAAAC-C-A-T---GC--AAATGGTTTTTATA-TCACAAT-T-TGAGATTGT
* * *
52783 -AAAATC
459 GCAGATG
** * * * * **
52789 GTTGAACTTTGAGTTTGTGCATAA-TGTATAAAAACAAGTTAGCACACA-GTTAATCA-CATCAA
1 GTT----TTT-A---TGCCCATAATTGT-T-CAGA-AA--T-G-A-A-ATTTTGAT-ATTTTCAA
* * * * * * * *
52851 GCACCAACAA-CGATTTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCAAATTCCC
48 -CTCCAA-AATC--CTT--C--ATGACTTGC-ACT-T-AACA-CA--CGAAAAATT-AAA--ACC
* * ** * *
52915 TGAA-GCACCCATGAATTCTCCAAAAATTT-T-TG-TTGATGCAAATATGCATGAAAA--ATTCA
96 --AATG----CA-G-GTTAT-C--ATGTTTCTGTGATTGA-GCGAGT-T---T-AAAACTATTCA
** * ** *** * * * * * * ** ** * ** ** *
52974 -AACCGTGCAAATGGTTTTTATATC-ACAATTTGAGA-TTGTGGATATGGTTTTTATGCCGATAA
144 TTTCCATTTAAAAACTTTCTAAAACAAC-ATTTCATACTTTTAAAGCTCGACTACA-GCAGA-AA
* * ** * * * ** ** *
53036 TTG-TT-CAGAAACGAAATTTTGATATTTTAAA-CTCCAAAATCCTTC-ATGACTTACA-CAT-A
206 TGGTTTCCA-AAGC-AAA--ACG-TA----AAAGCTTCAAAA-GCGTCGA-G-CTTTGAGTTTGT
* *** * * *** ** * * * * * **
53095 ACACCATGAAAAATTGAAAGCAA-TGTAGGTTATCATGTTTCTGTGCTTTGAGTGAGTTTAA-AA
259 GCGTAATGTATAA---AAA-CAAGT-TAGCACA-CA-GTTAAT-CGC-ATCA-AGCG-CCAATAA
* * * * ** * * * ** * * * *
53158 CTA-TTCATTTCAATTTAAAATCTC-GCTA-AAAAAACATTTCA-TACTT--TTA-A-CACTC--
313 CGATTTCA---CAA-ATGACATC-CAAATATCAACAGCATCCCACAAATTCCCTAGAGCACCCAT
* ** * ** * * * * ** * * * **
53213 GACTTCAAC-AGAAATGGTTGTCAAAACAAGGTATAAAAGCTTTAAAAATGT-TGATCTTTCAGT
373 GAATTCTCCTAAAAATGCATCT-AAAGCAA---AT--AAGCATGAAAAAT-TAAAACCATGCAAA
* ** * **** * * **
53276 TTGTGCATAACGTAT-A-AAAACAAG-TT-AGCACACA
431 TGGT-TTTTA--TATCACAATTTGAGATTGTGCAGATG
* * * * * * ** ** *** * *
53310 GTTGCATCAAGCGACAATAACAAT-TTCACAAATGGCATCAT-AGTATCAACAGCATCCCACAAT
1 GTT--TTTATGC--CCAT-A-ATTGTTCAGAAATGAAATTTTGA-TATTTTCAAC-T-CCAAAAT
* * * * ** * * * ** * * * ** *
53373 --TTCCCTGGAGCAT-CAATGAATTCTCCAAAAAAT-GCATC--TGCAGCG-AAT-AAGTGGCTT
57 CCTT-CAT-GA-CTTGCACTTAACACACGAAAAATTAAAACCAATGCAG-GTTATCATGTTTCTG
* * * * * * * *
53430 TTATATCA-C-AATTTGAAATTGTGTAATGTT---TTTACGCACATAATTGTTC-AGAAACGAA-
118 TGAT-TGAGCGAGTTTAAAACTAT-TCAT-TTCCATTTA---A-A-AACT-TTCTA-AAAC-AAC
* * * * * **** *** * *** *
53488 ATTTTGAT-CTTTT-GAGCTC--CAAAATCCTTCATGACATAC-ACTTAAAACCGTGAAAAAC-T
172 A-TTTCATACTTTTAAAGCTCGACTACAGCAGAAATGGTTTCCAAAGCAAAA-CGT-AAAAGCTT
* * * ** * * * ***
53547 -AAAACCATTACTG-G-TTATCATGTTTCCGTGTTTGAGAGAGT-TTAAAACTA-TTCATTTC-C
234 CAAAAGC-GT-C-GAGCTT-TGA-GTTT--GTGCGT-A-A-TGTATAAAAACAAGTT-AGCACAC
* ** * * * ** *
53606 ATTTAAAAGCATTGAGTTTGTGTGTAATTTATAAAAACAGGTTAGTACACAGTTAATCG-CAT-C
288 AGTTAATCGCA-TCA-----AGCGCCA---AT---AAC-GATT--T-CACA---AAT-GACATCC
* ** * * * * * ** * * *
53669 AAGTGCCAACAACAACCTCACAAATGACATCCAAATATCAACAGCATCCTACAAAATCCCCGGAG
333 AAATATCAACAGCATCC-CACAAAT----TCC------CTAGAGCA-CCCATGAATTCTCC-TA-
** * * * * * * *
53734 CACCCATGAATTCTGCAAA--AACTTCAGC-TGATGCAAA-T--AAGCAGGAAAAATGGTTTTTA
384 -A-AAATGCA-TCT--AAAGCAA-ATAAGCATGA--AAAATTAAAACCATG-CAAATGGTTTTTA
* *
53793 TGTCACAATTTGAGATCGTGCAGATG
440 TATCACAATTTGAGATTGTGCAGATG
* * * * *
53819 GTTTTTATGCCCATTATTGCTT-AGAAATGAAATTCT-ATTTTTTTTAACTCCAAAATACTTCAT
1 GTTTTTATGCCCATAATTG-TTCAGAAATGAAATTTTGA-TATTTTCAACTCCAAAATCCTTCAT
* * * * * *
53882 GAGTTGCACCTAACACCATGAAAAATGAAAACCAAAGCAGGTTATCATGTTTCTGTGACTGAGCG
64 GACTTGCACTTAACA-CACGAAAAATTAAAACCAATGCAGGTTATCATGTTTCTGTGATTGAGCG
** * * *
53947 AGTTTAAAACTACGCAGTTCCATTTAAAAACTTTCTAAACCAACATTTCATACTTTTAAAGCTTG
128 AGTTTAAAACTATTCATTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTCG
* * *
54012 ACTACAACATAAATGGTTTCCAAAGCAAAACGTAAAAGCTTCAAAAGCATCGAGCTTTGAGTTTG
193 ACTACAGCAGAAATGGTTTCCAAAGCAAAACGTAAAAGCTTCAAAAGCGTCGAGCTTTGAGTTTG
* * * *
54077 TGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCACATCAAGCTCCAATAACGACTTCACA
258 TGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCAATAACGATTTCACA
* * *
54142 AATGACATCCAAATATCAACAGCATCCCACAAATTCCCTGGAGCAGCCGTGAATTCTCCTAAAAA
323 AATGACATCCAAATATCAACAGCATCCCACAAATTCCCTAGAGCACCCATGAATTCTCCTAAAAA
* * * * * * * * **
54207 TTCAGCTGAAGCAAATAGGCGT-AAAAATAAAAATCGTTTAAATGGTTTTTATATCACAATTTGA
388 TGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCATGCAAATGGTTTTTATATCACAATTTGA
* *
54271 GAATGTGCATATG
453 GATTGTGCAGATG
* * * *
54284 GTTTTTATGCCCATAATTGGTCAGAAATGAAATTTTGATTTTTTTTTAACTCCAAAATACTTCAT
1 GTTTTTATGCCCATAATTGTTCAGAAATGAAATTTTGA--TATTTTCAACTCCAAAATCCTTCAT
* * * *
54349 GACTTGCACCTAACACCATGAAAAATGAAAACCAATGCAGGTTTTCATGTTTCTGTGA-TG-GCC
64 GACTTGCACTTAACA-CACGAAAAATTAAAACCAATGCAGGTTATCATGTTTCTGTGATTGAG-C
* * * *
54412 AAGTTTAAAACTATTCAATTCCATTTCAAAACTTTCT--AA-AAC-TTTCATAGTTTTAAAGCTC
127 GAGTTTAAAACTATTCATTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTC
* * * * * *
54473 AACTACATCATAAATGGTTTCC-AACCAACACGTAAAAGCTTCAAAAGCGTTGAGCTTTGAGTTT
192 GACTACAGCAGAAATGGTTTCCAAAGCAAAACGTAAAAGCTTCAAAAGCGTCGAGCTTTGAGTTT
* * * *
54537 GTGCGTAATGTATAAAAACAAGTTAGCAAACAGTTAATCGCATCAAGCTCTAATAACGATTTCGC
257 GTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCAATAACGATTTCAC
** * * * *
54602 AAATGACATCCAAATATCAACAGCATCAAACAAATTGCCTGGAGCTCCCATGAATTCTCTTAAAA
322 AAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTAGAGCACCCATGAATTCTCCTAAAA
* *
54667 ATACATCTAAAGCAAATAAGCATGAAAAATTAAAA-CAGTGCAAACGGTTTTTATATCACAATTT
387 ATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCA-TGCAAATGGTTTTTATATCACAATTT
* *
54731 GAAATTGTGCAGATT
451 GAGATTGTGCAGATG
* * * * * *
54746 GTTCTTATGCCCATAATTGTTCAGAAATGAAATTTTCATATTTTCAGCCCCGAATTCCTTCATGA
1 GTTTTTATGCCCATAATTGTTCAGAAATGAAATTTTGATATTTTCAACTCCAAAATCCTTCATGA
* * * * * * * * *
54811 CCTACACCTAACAC-CGTGAGAAATTAAAACCAGTGCTGGCTATCATGTTTCTGTGATTAAGCAA
66 CTTGCACTTAACACAC--GAAAAATTAAAACCAATGCAGGTTATCATGTTTCTGTGATTGAGCGA
* * * *
54875 GTTTAAAACTATTCATATCCATTTAAAAACTTCCTAAAACAACATTTCAAACTTTTAAAGCTCAA
129 GTTTAAAACTATTCATTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTCGA
* * * *
54940 CTCCAGTAGAAATGGATT------C----C---AAAG---C---A---TCGAGCTTTGAGTTTGC
194 CTACAGCAGAAATGGTTTCCAAAGCAAAACGTAAAAGCTTCAAAAGCGTCGAGCTTTGAGTTTGT
* * * * * *
54983 GTGTAATGTATAAAAAACAAGTTAACACATAGTTAATTGCATCAAGCGCAAATAACGACTTCACA
259 GCGTAATGTAT-AAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCAATAACGATTTCACA
* * * * *
55048 AATAACATCCAAATATCAACAGCATCCCACAAATTCCCTGGAGCAGCAATCAATTCTCCTAAAAA
323 AATGACATCCAAATATCAACAGCATCCCACAAATTCCCTAGAGCACCCATGAATTCTCCTAAAAA
* *
55113 TGCATCTAAAGCGAATAAGCATGAAAAATTAAAACCATGCAAATGGTTTTTGTATCACAATTTGA
388 TGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCATGCAAATGGTTTTTATATCACAATTTGA
* *
55178 AAATGTGCAGATG
453 GATTGTGCAGATG
** * * * *
55191 GTTTGAATGCCCGTAATTGTTTAGAAACGAAATTTTGATATTTTCAGCTCCAAAATCCTTCATGA
1 GTTTTTATGCCCATAATTGTTCAGAAATGAAATTTTGATATTTTCAACTCCAAAATCCTTCATGA
** * ** * * * * *
55256 CTTATATTTAACACTGTGACAAATTAAAACCAATGCAAGTTATCATATTTCCGTGTTTGAGCGAG
66 CTTGCACTTAACAC-ACGAAAAATTAAAACCAATGCAGGTTATCATGTTTCTGTGATTGAGCGAG
* * * * * * *
55321 TTTAAAACAATTAATTTCCATTTAAAAACTTGCTAAAACAATATTTTATACTTTTAACGCTCAAC
130 TTTAAAACTATTCATTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTCGAC
* * * * **
55386 TCCAGCAGAAATGGTTTTCAAACCAAAACATAAAAGCTTCAAAAATGTCGAG-TGTTGAGTTTGT
195 TACAGCAGAAATGGTTTCCAAAGCAAAACGTAAAAGCTTCAAAAGCGTCGAGCT-TTGAGTTTGT
* * * * * *
55450 GCGTCACGTATAAAAACAAGTTAGCGCATAGTTAATCGCATCAAGTGCAAATAACGATTTCACAA
259 GCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCAATAACGATTTCACAA
* * * * * *
55515 ATGACATCAAAATACCAACAGCATTTCC-CAAATTCCCTGGAACACCCATGAATTATCCTAAAAA
324 ATGACATCCAAATATCAACAGCA-TCCCACAAATTCCCTAGAGCACCCATGAATTCTCCTAAAAA
* * * * * *
55579 TGCATCTAAAGCAAATAAGAATGAAAAATTAAAACCGTGCAAATGCTCTTTGTATCACAATTTCA
388 TGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCATGCAAATGGTTTTTATATCACAATTTGA
* * *
55644 AATTGTGCAAAAG
453 GATTGTGCAGATG
* * * * * * *
55657 GTTTTTTTGCCCATAATTG-CCACAAACGAAATTTTGATATTTTGAGCTCAAAAATCCTTCATGA
1 GTTTTTATGCCCATAATTGTTCAGAAATGAAATTTTGATATTTTCAACTCCAAAATCCTTCATGA
* ** * * *
55721 CTTGCACTTAACAC-CGTGAAAAATAAAAACCAATGTGGGTTATAATGTTTTTGTGTTTGAGCGA
66 CTTGCACTTAACACAC--GAAAAATTAAAACCAATGCAGGTTATCATGTTTCTGTGATTGAGCGA
* *
55785 GTTTAAAACTATTCATTTCCATTTAAAAACTTGCTAAAACAACATCTCATAC-TTTAAAGCTCGA
129 GTTTAAAACTATTCATTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTCGA
* * * ** *
55849 CTCCAGCAGAAATGGTTTTCAAAGAAAAATATAAAAGCTTCAAAAACGTCGAGCTTTTGAGTTTG
194 CTACAGCAGAAATGGTTTCCAAAGCAAAACGTAAAAGCTTCAAAAGCGTCGAGC-TTTGAGTTTG
* * * * * * *
55914 TACGTAAGGTA-AAAAAGCAAGTTAGTATAAAGTTAATCGCATTAAGCACCAATAACGATTTCAC
258 TGCGTAATGTATAAAAA-CAAGTTAGCACACAGTTAATCGCATCAAGCGCCAATAACGATTTCAC
* ** * *
55978 AAATGACATTCAAATATCAACATG-ATCCCACAAATTCCCCGGGAGCACCCATGTATTCTCCAAA
322 AAATGACATCCAAATATCAACA-GCATCCCACAAATT-CCCTAGAGCACCCATGAATTCTCCTAA
* *
56042 AAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAATCGTGCAAATGGTTTTTATATCACAATT
385 AAATGCATCTAAAGCAAATAAGCATGAAAAATTAAAACCATGCAAATGGTTTTTATATCACAATT
* * *
56107 TGAAACTGTGTAGATG
450 TGAGATTGTGCAGATG
* * * * * * * ** *
56123 GTTTTTATGCCCATAATTGTTCTGAAATTAAATTTT-TTTTTTTTAGCTGCAAAAAACTTTATGA
1 GTTTTTATGCCCATAATTGTTCAGAAATGAAATTTTGATATTTTCAACTCCAAAATCCTTCATGA
* * * * * * * *
56187 CTTGCACCTACCAC-CGTGAAATATGATAACCAATGCAGGTTTTCATGTTTCTATGTTTGAGCGA
66 CTTGCACTTAACACAC--GAAAAATTAAAACCAATGCAGGTTATCATGTTTCTGTGATTGAGCGA
* * * * * * *
56251 GTTTAAGACTATTCATTTTC-TGTAAAAACTTGCTAAAACAACATTTCGTACTTTTAAAACTTGA
129 GTTTAAAACTATTCATTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTCGA
* * * * * * *
56315 CTCCAACAGAAATGGTTTCCGAAGCAAAACATAAAAGCTTCAAAAGCATCAAGCTTTCAGTTTGT
194 CTACAGCAGAAATGGTTTCCAAAGCAAAACGTAAAAGCTTCAAAAGCGTCGAGCTTTGAGTTTGT
** * * * * *
56380 GCGTAATGTATAAAAACGTGTTAACATACAGTTAATCACATCAACCGCCAATAACGATTTCTCAA
259 GCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCAATAACGATTTCACAA
* *
56445 ATGACATCCAAATATCAACAGCATCCCACAAATGCCCT-GCAGCACCCATGAATTCCCCTAAAAA
324 ATGACATCCAAATATCAACAGCATCCCACAAATTCCCTAG-AGCACCCATGAATTCTCCTAAAAA
* * *
56509 GGCAGT-TGAAAG-AAAAAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATATCACAATTT
388 TGCA-TCT-AAAGCAAATAAGCATGAAAAATTAAAACCATGCAAATGGTTTTTATATCACAATTT
*
56572 GAGATTGTGCAAATG
451 GAGATTGTGCAGATG
* * * *
56587 GTTTTTATGCTCATAATTGTTCAGAAATGAAATTTTGATATTTTTAGCTCCAAAATCTTTCATGA
1 GTTTTTATGCCCATAATTGTTCAGAAATGAAATTTTGATATTTTCAACTCCAAAATCCTTCATGA
* * * * *
56652 CTTGCACCTAACACCATGAGAAATTAAAACCAATGTAGGTTATCATGTTTATGTGATTGAGCGAG
66 CTTGCACTTAACA-CACGAAAAATTAAAACCAATGCAGGTTATCATGTTTCTGTGATTGAGCGAG
** * *
56717 TTTAAAACTATTCATTTTTATTTAGAAACTTTCTAAAACAACATTTCACACTTTTAAAGCTCGAC
130 TTTAAAACTATTCATTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTCGAC
* * * *
56782 TACAGCATAAATGGTTTCCAAAGCAAAACATAAAAGCTTCAAAATCGTCGACCTTTGAGTTTGTG
195 TACAGCAGAAATGGTTTCCAAAGCAAAACGTAAAAGCTTCAAAAGCGTCGAGCTTTGAGTTTGTG
* * * *
56847 CATAA--TATATAAA-AA--T-G-----AGTTAA----ATCAAGTGCCAATAACGATTTCCCAAA
260 CGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCAATAACGATTTCACAAA
* * * * *
56897 TGACATCCAAATATCAACAGCATCCCATAAACTCCCTGGAGGACCCATGAATTCTCCTAAAAATA
325 TGACATCCAAATATCAACAGCATCCCACAAATTCCCTAGAGCACCCATGAATTCTCCTAAAAATG
* * *
56962 CATCTAAAGCAAATAAACATGAAAAATTAAAACCATTCAAATGGTTTTTATATCACAATTTGAAA
390 CATCTAAAGCAAATAAGCATGAAAAATTAAAACCATGCAAATGGTTTTTATATCACAATTTGAGA
*
57027 TTGTGTAGATG
455 TTGTGCAGATG
* * * * * * * * * *
57038 GTTCTTAT-CCTAATAATTGTTTAGAAATCAAATTCTCATATTTTCAGCTCCATATTCCCTCATG
1 GTTTTTATGCC-CATAATTGTTCAGAAATGAAATTTTGATATTTTCAACTCCAAAATCCTTCATG
* *
57102 ACTTACACTTAACAC-CGTGAGAAATTAAAACCAATGCAGGTTATCATGTTTCTGTGATTGAGCG
65 ACTTGCACTTAACACAC--GAAAAATTAAAACCAATGCAGGTTATCATGTTTCTGTGATTGAGCG
* * * *
57166 AGTTTAAAACAATTCATTTTCATTTAAAAACTTTCAAAAACAACATTTCATACTTTTAAAGCTTG
128 AGTTTAAAACTATTCATTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTCG
* * * * *
57231 GCTACAGCATAAATGGTTTCCAAAGC-AAACTGT-AAAGCTTC-AAATCGTCAAGGTTTGAGTTT
193 ACTACAGCAGAAATGGTTTCCAAAGCAAAAC-GTAAAAGCTTCAAAAGCGTCGAGCTTTGAGTTT
57293 GTGCGT
257 GTGCGT
57299 TATCATGACT
Statistics
Matches: 5960, Mismatches: 1297, Indels: 1002
0.72 0.16 0.12
Matches are distributed among these distances:
442 70 0.01
443 253 0.04
444 192 0.03
445 591 0.10
446 7 0.00
447 1 0.00
448 1 0.00
449 26 0.00
450 20 0.00
451 334 0.06
452 2 0.00
453 4 0.00
454 9 0.00
455 15 0.00
456 62 0.01
457 10 0.00
458 35 0.01
459 51 0.01
460 100 0.02
461 243 0.04
462 118 0.02
463 12 0.00
464 295 0.05
465 711 0.12
466 1074 0.18
467 227 0.04
468 564 0.09
469 51 0.01
470 11 0.00
471 20 0.00
472 20 0.00
473 14 0.00
474 14 0.00
475 23 0.00
476 12 0.00
477 10 0.00
478 10 0.00
479 12 0.00
480 5 0.00
481 7 0.00
482 18 0.00
483 23 0.00
484 12 0.00
485 15 0.00
486 11 0.00
487 25 0.00
488 23 0.00
489 23 0.00
490 6 0.00
491 2 0.00
492 2 0.00
493 2 0.00
495 22 0.00
496 3 0.00
497 4 0.00
499 4 0.00
500 20 0.00
501 12 0.00
502 26 0.00
503 34 0.01
504 34 0.01
505 26 0.00
506 33 0.01
507 36 0.01
508 23 0.00
509 15 0.00
510 16 0.00
511 15 0.00
512 5 0.00
513 8 0.00
514 3 0.00
515 6 0.00
516 2 0.00
517 11 0.00
518 4 0.00
519 5 0.00
520 8 0.00
521 17 0.00
522 15 0.00
523 22 0.00
524 11 0.00
525 6 0.00
526 6 0.00
527 6 0.00
528 16 0.00
529 12 0.00
530 10 0.00
531 10 0.00
532 7 0.00
533 10 0.00
534 9 0.00
535 3 0.00
536 11 0.00
537 4 0.00
538 6 0.00
539 6 0.00
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (465 bp):
GTTTTTATGCCCATAATTGTTCAGAAATGAAATTTTGATATTTTCAACTCCAAAATCCTTCATGA
CTTGCACTTAACACACGAAAAATTAAAACCAATGCAGGTTATCATGTTTCTGTGATTGAGCGAGT
TTAAAACTATTCATTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTCGACT
ACAGCAGAAATGGTTTCCAAAGCAAAACGTAAAAGCTTCAAAAGCGTCGAGCTTTGAGTTTGTGC
GTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCAATAACGATTTCACAAAT
GACATCCAAATATCAACAGCATCCCACAAATTCCCTAGAGCACCCATGAATTCTCCTAAAAATGC
ATCTAAAGCAAATAAGCATGAAAAATTAAAACCATGCAAATGGTTTTTATATCACAATTTGAGAT
TGTGCAGATG
Found at i:52897 original size:711 final size:727
Alignment explanation
Indices: 51661--53109 Score: 1808
Period size: 711 Copynumber: 2.0 Consensus size: 727
51651 GCACACAGTT
* * *
51661 AATCGCATCAAGCTCCAATAATGATTTCGCAAATAACATCCAAATATCAACAGCATCCCACAAAT
1 AATCACATAAAGCTCCAATAATGATTTCACAAATAACATCCAAATATCAACAGCATCCCACAAAT
* *
51726 TCCCTAAAGCACCCATGAATTACTCTAAAAATTCTGCAGAAGCAAATAAGCATGAAAAATAAAAA
66 TCCCCAAAGCACCCACGAATTACTCTAAAAATTCT----AAGCAAATAA-CATGAAAAATAAAAA
* * * **
51791 CCATGCAAATGGTTTTTATATCACAATTTGAGATTGTGCATATGGGTTTTTTTGCCCATAATTGT
126 CCATGCAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATGGGTTCTTAGGCCCATAATTGT
* * * * * * * *
51856 TCAGAAATTAAAAATTTTGATTTTTTTAACTCTAAAATACTTCGTGACTTGCATCTAACACTGTG
191 TCAGAAATTAAAAATTTTCATATTTTCAACGCCAAAATACTTCATGACTTACATCTAACACCGTG
51921 AAAAATAAAACCAACGCAGGTTATCATATTTCTAAGATTGAGCGAGTTTAAAACTATTCATTTCC
256 AAAAATAAAACCAACGCAGGTTATCATATTTCTAAGATTGAGCGAGTTTAAAACTATTCATTTCC
* * * *
51986 ATTTAAAAACTTTCTAAAACAAGATTTCATACTTTTAAAGCTTGACTACAGTATAAATGGATTCC
321 ATTTAAAAACATTCTAAAACAACATTTCATACTTTTAAAGCTCGACTACAGCATAAATGGATTCC
**
52051 AAAGCAAAACGTAAAAGCTTCAAAAGCATCGAACTTTGAGTTTGTGTGTAATGTATAAAAACAAG
386 AAAGCAAAACGTAAAAGCTTCAAAAGCATCGAACTTTGAGTTTGTGCATAATGTATAAAAACAAG
* * * * * *
52116 TTAGCACACATGTAATCACATGAAGCTCCAACAATGATTTCACAAATGACGTCCAATTATCAATA
451 TTAGCACACATGTAATCACATCAAGCACCAACAACGATTTCACAAATGACATCCAAATATCAACA
52181 GCAT-C-C-TC-CCCAG-AGCACCCATGAATTCTCCAAAAATACAT-CTAATGCAAATAAGCAT-
516 GCATCCACATCACCCAGAAGCACCCATGAATTCTCCAAAAATACATGCTAATGCAAATAAGCATG
52239 AAAAATTAAAACCGTACAAATGGTTTTAATATCACAATTTGAGATTGCACATATGGGTTATATGC
581 AAAAATTAAAACCGTACAAATGGTTTTAATATCACAATTTGAGATTGCACATATGGGTTATATGC
* * * * *
52304 CCATAACTGGTCAGAAATGAAATTTTGATTTTTTTAACTCCAAAATACTTCATGACTTGCACCTA
646 CCATAACTGGTCAGAAACGAAATTTTGATATTTTAAACTCCAAAATACTTCATGACTTACACATA
**
52369 ACACTGTGAAAAATTAA
711 ACACCATGAAAAATTAA
** *
52386 AATCACATAAAGCTCCAATAATGATTTCACAAATGTCATCCAAATATCAACAGCATCTCACAAAT
1 AATCACATAAAGCTCCAATAATGATTTCACAAATAACATCCAAATATCAACAGCATCCCACAAAT
** ** * *
52451 TCCCCGCAGCACCCACGAATT-CTC-ATAAAA-T-T-A-CATCTAA-A-GAAAAATTAAAACCGT
66 TCCCCAAAGCACCCACGAATTACTCTA-AAAATTCTAAGCAAATAACATGAAAAATAAAAACCAT
* *
52508 GCAAATGGTTTTTATATCGCAATTTGAAATTGTGCAGAT-GGTTCTTAGGCTCATAATTGTTCAG
130 GCAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATGGGTTCTTAGGCCCATAATTGTTCAG
* * *
52572 AAA-T-GAAATTTTCATATTTTCAGCGCCAAATTTA-TTCATGACTTACA-CTTAACACCGTGAG
195 AAATTAAAAATTTTCATATTTTCAACGCCAAA-ATACTTCATGACTTACATC-TAACACCGTGA-
* *** * * **
52633 AAATTAAAACCCGTGTAGGTTATCATGTTTCTGTGATTGAGCGAGTTTAAAACTATTCATTTCCA
257 AAAATAAAACCAACGCAGGTTATCATATTTCTAAGATTGAGCGAGTTTAAAACTATTCATTTCCA
*
52698 TTTAAAAACATTCTAAAACAACATTTTATACTTTTAAAGCTCGACTACAGCATAAATGG-TTCCC
322 TTTAAAAACATTCTAAAACAACATTTCATACTTTTAAAGCTCGACTACAGCATAAATGGATT-CC
* * * * * *
52762 AAAGTAAAATGTAAAAGCTTTAAAATCGTTGAACTTTGAGTTTGTGCATAATGTATAAAAACAAG
386 AAAGCAAAACGTAAAAGCTTCAAAAGCATCGAACTTTGAGTTTGTGCATAATGTATAAAAACAAG
52827 TTAGCACACA-GTTAATCACATCAAGCACCAACAACGATTTCACAAATGACATCCAAATATCAAC
451 TTAGCACACATG-TAATCACATCAAGCACCAACAACGATTTCACAAATGACATCCAAATATCAAC
* *** * *
52891 AGCATCCCACAAATTCAAATTCCCTGAAGCACCCATGAATTCTCCAAAAATTTTTGTTGATGCAA
515 AGCAT-CCAC--A-TC--A--CCCAGAAGCACCCATGAATTCTCCAAAAATACATGCTAATGCAA
* * * * ***
52956 ATATGCATGAAAAATTCAAACCGTGCAAATGGTTTTTATATCACAATTTGAGATTGTGGATATGG
572 ATAAGCATGAAAAATTAAAACCGTACAAATGGTTTTAATATCACAATTTGAGATTGCACATATGG
* * * * * *
53021 TTTTTATGCCGATAATTGTTCAGAAACGAAATTTTGATATTTTAAACTCCAAAATCCTTCATGAC
637 GTTATATGCCCATAACTGGTCAGAAACGAAATTTTGATATTTTAAACTCCAAAATACTTCATGAC
53086 TTACACATAACACCATGAAAAATT
702 TTACACATAACACCATGAAAAATT
53110 GAAAGCAATG
Statistics
Matches: 618, Mismatches: 85, Indels: 41
0.83 0.11 0.06
Matches are distributed among these distances:
709 1 0.00
710 43 0.07
711 234 0.38
712 24 0.04
713 51 0.08
714 2 0.00
716 5 0.01
717 1 0.00
718 2 0.00
722 1 0.00
723 6 0.01
724 32 0.05
725 90 0.15
726 126 0.20
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.30
Consensus pattern (727 bp):
AATCACATAAAGCTCCAATAATGATTTCACAAATAACATCCAAATATCAACAGCATCCCACAAAT
TCCCCAAAGCACCCACGAATTACTCTAAAAATTCTAAGCAAATAACATGAAAAATAAAAACCATG
CAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATGGGTTCTTAGGCCCATAATTGTTCAGA
AATTAAAAATTTTCATATTTTCAACGCCAAAATACTTCATGACTTACATCTAACACCGTGAAAAA
TAAAACCAACGCAGGTTATCATATTTCTAAGATTGAGCGAGTTTAAAACTATTCATTTCCATTTA
AAAACATTCTAAAACAACATTTCATACTTTTAAAGCTCGACTACAGCATAAATGGATTCCAAAGC
AAAACGTAAAAGCTTCAAAAGCATCGAACTTTGAGTTTGTGCATAATGTATAAAAACAAGTTAGC
ACACATGTAATCACATCAAGCACCAACAACGATTTCACAAATGACATCCAAATATCAACAGCATC
CACATCACCCAGAAGCACCCATGAATTCTCCAAAAATACATGCTAATGCAAATAAGCATGAAAAA
TTAAAACCGTACAAATGGTTTTAATATCACAATTTGAGATTGCACATATGGGTTATATGCCCATA
ACTGGTCAGAAACGAAATTTTGATATTTTAAACTCCAAAATACTTCATGACTTACACATAACACC
ATGAAAAATTAA
Found at i:59354 original size:469 final size:465
Alignment explanation
Indices: 58124--60283 Score: 2731
Period size: 467 Copynumber: 4.6 Consensus size: 465
58114 AATTAAAACC
* * * *
58124 GTGCAGGTGGTTTTTGTGCCCATAATTGTTCAGAAATGAAATTTTGATATTTTTAGCTCCAAAAT
1 GTGCAGATGGTTTTTATGCCCATAATTGTTCAGAAATGAAATTTTGATTTTTTTAACTCCAAAAT
*
58189 -CGTTCATGACTTGCACCTAACACCGTGAAAAATTAAAACCAATGCAGGTTATCATTTTTCTGTG
66 AC-TTCATGACTTGCACCTAACACCGTG-AAAATTAAAACCAATGCAGGTTATCATGTTTCTGTG
* * *
58253 TTTGAGCGAGTTTAAAACTATTCATTTCCATTTAAAAACTTACTAAAACAACATTTCATACTTTT
129 ATTGAGCGAGTTTAAAACTATTCAGTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTT
* * * * * * * * *
58318 AAAGCTCGAATCCAGCAGAAAATTGCTTCCAAAGCAGAACATAAAAGCTTCAAAAGCGTTGAGCT
194 AAAGCTCGAATACAGCA-TAAATGGTTTCCAAACCAAAACGTAAAAGCTTCAAAAGTGTCGAGCT
* * * * *
58383 TTGTGTTTGTGCGTAATGAATAAAAACAAGTAAGCACACAGTTAATTGTATCAAAG-TGCCAATA
258 TTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATC-AAGCT-CCAATA
* ** *
58447 ACGATTTCACAAATGACATCCAAATATCAATAGCATTGCACAAATTCCCTGGAGCACCCATGTAT
321 ACGATTTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTGGAGCACCCATGAAT
* ** * * *
58512 TCTCCTAAAAATGCAACTAAAGCAAATAAGAATGAAAAATTAAAATCGTGCAAATGGTTTTTAAA
386 TCTCCTAAAAATACTGCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATA
*
58577 TCACAAGTTGAAATT
451 TCACAATTTGAAATT
* *
58592 GTACATATGGTTTTTATGCCCATAATTGTTCAGAAATGAAATTTTGATTTTTTTAACTCCAAAAT
1 GTGCAGATGGTTTTTATGCCCATAATTGTTCAGAAATGAAATTTTGATTTTTTTAACTCCAAAAT
* * * *
58657 ACTTCATGACTTGCACCTAACACCATGAAAAATGAAAACCAACGGAGGTTATCATGTTTCTGTGA
66 ACTTCATGACTTGCACCTAACACCGTG-AAAATTAAAACCAATGCAGGTTATCATGTTTCTGTGA
* * * * *
58722 TTGAGCGAGTTTAAAACAATTCAGTTCCCTTTAAAAATTTTTTAAAACAACATTTCTTACTTTTA
130 TTGAGCGAGTTTAAAACTATTCAGTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTA
* * * ** * *
58787 AAGCTTGACTACTGCATAAATGGTTTCCAAAGAAAAACAG-AAAAGCTTTAAAAGCGTCGAGCTT
195 AAGCTCGAATACAGCATAAATGGTTTCCAAACCAAAAC-GTAAAAGCTTCAAAAGTGTCGAGCTT
* * * *
58851 TGAGTTTATGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCACATCAAGCTCCAATAATG
259 TGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCTCCAATAACG
* * * * *
58916 ATTTCACAAACGATATCAAAATATCAACAGCATCCCACAAATTCCCTGGTGCACCCAGGAATTCT
324 ATTTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTGGAGCACCCATGAATTCT
* * **
58981 CCTAAAAATACTGCTGAAGTAAATAAGCATGAAAAATTAAAACCGTGCAAACAGTTTTTATATCA
389 CCTAAAAATACTGCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATATCA
*
59046 CAATTTTGAGATT
454 CAA-TTTGAAATT
* * *
59059 GTGCATATGGTTTTTATGCCCATATTTCG-TCAGAAATGGAATTTTTGATTTTTTTTTAACTCCA
1 GTGCAGATGGTTTTTATGCCCATAATT-GTTCAGAAAT-GAAATTTTGA--TTTTTTTAACTCCA
* * * *
59123 AAATACTTCGTGACTTGCACCTAACACCGTGAAAATTTAAAATCAATGCAGGTTTTCATGTGTCT
62 AAATACTTCATGACTTGCACCTAACACCGTGAAAA-TTAAAACCAATGCAGGTTATCATGTTTCT
* * * * *
59188 GTGA-TGACCAAGTTTAAAACTATTTATTTCCATTTAAAAAGTTTCTAAAACAACATTTCATACT
126 GTGATTGAGCGAGTTTAAAACTATTCAGTTCCATTTAAAAACTTTCTAAAACAACATTTCATACT
* * * * * *
59252 TTTAAAGCTCGACTACAGCATAAATAGTTTCCAAACCAACACGTAAAACCTTAAAAAGTGTAGAG
191 TTTAAAGCTCGAATACAGCATAAATGGTTTCCAAACCAAAACGTAAAAGCTTCAAAAGTGTCGAG
* * **
59317 CTTTGAGTTTGTGTGTAATGTATAAAAACAAGTTAGCACACAGTTAATTGCATCAAATTCCAATA
256 CTTTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCTCCAATA
*
59382 ACGATTTCACAAATGACATCCAAATATCACCAGCATCCCACAAATTCCCTGGAGCACCCATGAAT
321 ACGATTTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTGGAGCACCCATGAAT
* * *
59447 TCTCTTAAAAATACAT-CAAAAGCAAATAAGCAGGAAAAATTAAAACCGTGCAAATGGTTTTTTA
386 TCTCCTAAAAATAC-TGCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGG-TTTTTA
*
59511 TATCAAAATTTGAAATT
449 TATCACAATTTGAAATT
* * * * * ** * * *
59528 GTGCAGATGGTTCTTACGCCCATAACTGTTCTGAAATGAAATTTTCAAATTTTCAGCTCCAAATT
1 GTGCAGATGGTTTTTATGCCCATAATTGTTCAGAAATGAAATTTTGATTTTTTTAACTCCAAAAT
* * * ** * * * *
59593 CCTTCATGACTTACACTTAACATTGTGGGAAATTAAAACCAACGCAGTTTATCATGTTTCTGCGA
66 ACTTCATGACTTGCACCTAACACCGT-GAAAATTAAAACCAATGCAGGTTATCATGTTTCTGTGA
* * * * *
59658 CTGAGCGAGTTTAAAACTATTCA-TTCTTATTTAAAAACTTTGTAAAACAAAATTTGATACTTTT
130 TTGAGCGAGTTTAAAACTATTCAGTTC-CATTTAAAAACTTTCTAAAACAACATTTCATACTTTT
* ** * *
59722 AAAGCTCGAGTACAGCATAAATGGTTTCCAAAAAAAAACATAAAAGCTTCAAAA-TCGTCCAGCT
194 AAAGCTCGAATACAGCATAAATGGTTTCCAAACCAAAACGTAAAAGCTTCAAAAGT-GTCGAGCT
* * *
59786 TTTAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCGCCAATAAT
258 TTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCTCCAATAAC
* * *
59851 GATTTCACAAATAACATCCAAATATCAACAGCATCCCACAAATTCACTGGAACACCCATGAATTC
323 GATTTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTGGAGCACCCATGAATTC
* * * * * *
59916 TCC-AAAAAT-TTGAGCTGATGCAAATAAGCAAGAAAAATTAAAACCGTACAAATGGTTTTTACA
388 TCCTAAAAATACT--GCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATA
* *
59979 TCACAATTTGAGATC
451 TCACAATTTGAAATT
* * *
59994 GTGCGGATGGTTTTTATGCCCATAAATGTTTAGAAATGAAATTTTGATTTTTTTAACTCCAAAAT
1 GTGCAGATGGTTTTTATGCCCATAATTGTTCAGAAATGAAATTTTGATTTTTTTAACTCCAAAAT
* * *
60059 ACTTCATGACTTGCACCTAAC-CCATGGAAAATGAAAACCAATGCAAGTTATCATGTTTCTGTGA
66 ACTTCATGACTTGCACCTAACACCGT-GAAAATTAAAACCAATGCAGGTTATCATGTTTCTGTGA
* * *
60123 TTGAGCGAGTTTAAAACTATTCAGTTCTATTTAAAAACTTCCCAAAACAACATTTCATACTTTTA
130 TTGAGCGAGTTTAAAACTATTCAGTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTA
* *
60188 AAGCTTGAATACAGCATAAATGGTTTCCAAACCAAAACGTGAAAGCTTCAAAAGTGTCGAGCTTT
195 AAGCTCGAATACAGCATAAATGGTTTCCAAACCAAAACGTAAAAGCTTCAAAAGTGTCGAGCTTT
*
60253 TAGTTTGTGCGTAATGTATAAAAACAAGTTA
260 GAGTTTGTGCGTAATGTATAAAAACAAGTTA
60284 AAGCAAATAA
Statistics
Matches: 1453, Mismatches: 217, Indels: 47
0.85 0.13 0.03
Matches are distributed among these distances:
464 1 0.00
465 176 0.12
466 289 0.20
467 387 0.27
468 206 0.14
469 310 0.21
470 84 0.06
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (465 bp):
GTGCAGATGGTTTTTATGCCCATAATTGTTCAGAAATGAAATTTTGATTTTTTTAACTCCAAAAT
ACTTCATGACTTGCACCTAACACCGTGAAAATTAAAACCAATGCAGGTTATCATGTTTCTGTGAT
TGAGCGAGTTTAAAACTATTCAGTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAA
AGCTCGAATACAGCATAAATGGTTTCCAAACCAAAACGTAAAAGCTTCAAAAGTGTCGAGCTTTG
AGTTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGCATCAAGCTCCAATAACGAT
TTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTGGAGCACCCATGAATTCTCC
TAAAAATACTGCTAAAGCAAATAAGCATGAAAAATTAAAACCGTGCAAATGGTTTTTATATCACA
ATTTGAAATT
Found at i:59943 original size:936 final size:930
Alignment explanation
Indices: 58123--60283 Score: 2950
Period size: 936 Copynumber: 2.3 Consensus size: 930
58113 GAATTAAAAC
* * * *
58123 CGTGCAGGTGGTTTTTGTGCCCATAATTGTTCAGAAATGAAATTTTGATATTTTTAGCTCCAAAA
1 CGTGCAGATGGTTTTTATGCCCATAATTGTTCAGAAATGAAATTTTGATTTTTTTAACTCCAAAA
*
58188 T-CGTTCATGACTTGCACCTAACACCGTGAAAAATTAAAACCAATGCAGGTTATCATTTTTCTGT
66 TAC-TTCATGACTTGCACCTAACACCGTG-AAAATTAAAACCAATGCAGGTTATCATGTTTCTGT
*
58252 GTTTGAGCGAGTTTAAAACTATTCATTTCCATTTAAAAACTTACTAAAACAACATTTCATACTTT
129 G-ATGAGCGAGTTTAAAACTATTCATTTCCATTTAAAAACTTACTAAAACAACATTTCATACTTT
* * * * * * * *
58317 TAAAGCTCGAATCCAGCAGAAAATTGCTTCCAAAGCAGAACATAAAAGCTTCAAAAGCGTTGAGC
193 TAAAGCTCGAATACAGCA-TAAATAGTTTCCAAACCA-AACGTAAAAGCTTCAAAAGTGTAGAGC
* * * *
58382 TTTGTGTTTGTGCGTAATGAATAAAAACAAGTAAGCACACAGTTAATTGTATCAAAGTGCCAATA
256 TTTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATTGCATCAAAGTGCCAATA
* ** *
58447 ACGATTTCACAAATGACATCCAAATATCAATAGCATTGCACAAATTCCCTGGAGCACCCATGTAT
321 ACGATTTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTGGAGCACCCATGAAT
* * * *
58512 TCTCCTAAAAATGCAACTAAAGCAAATAAGAATGAAAAATTAAAATCGTGCAAATGGTTTTTAAA
386 TCTCCTAAAAATACAACAAAAGCAAATAAGAAGGAAAAATTAAAACCGTGCAAATGGTTTTTAAA
* * * * * * **
58577 TCACAAGTTGAAATTGTACATATGGTTTTTATGCCCATAATTGTTCAGAAATGAAATTTTGATTT
451 TCAAAAGTTGAAATTGTACAGATGGTTCTTACGCCCATAACTGTTCAGAAATGAAATTTTCAAAT
* * *
58642 TTTTAACTCCAAAATACTTCATGACTTGCACCTAACACCATGAAAAATGAAAACCAACGGAGGTT
516 TTTCAACTCCAAAATACTTCATGACTTACACCTAACACCATGAAAAATGAAAACCAACGCAGGTT
* * * * *
58707 ATCATGTTTCTGTGATTGAGCGAGTTTAAAACAATTCAGTTCCCTTTAAAAATTTTTTAAAACAA
581 ATCATGTTTCTGCGACTGAGCGAGTTTAAAACAATTCAGTTCCATTTAAAAACTTTGTAAAACAA
* * * * * *
58772 CATTTCTTACTTTTAAAGCTTGACTACTGCATAAATGGTTTCCAAAGAAAAACAGAAAAGCTTTA
646 AATTTCATACTTTTAAAGCTCGACTACAGCATAAATGGTTTCCAAAAAAAAACAGAAAAGCTTCA
*
58837 AAAGCGTCGAGCTTTGAGTTTATGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCACATC
711 AAAGCGTCCAGCTTTGAGTTTATGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCACATC
* * * * **
58902 AAGCTCCAATAATGATTTCACAAACGATATCAAAATATCAACAGCATCCCACAAATTCCCTGGTG
776 AAGCGCCAATAATGATTTCACAAACAACATCAAAATATCAACAGCATCCCACAAATTCACTGGAA
* * *
58967 CACCCAGGAATTCTCCTAAAAATACTGCTGAAGTAAATAAGCATGAAAAATTAAAACCGTGCAAA
841 CACCCAGGAATTCTCCTAAAAATACTGCTGAAGCAAATAAGCAAGAAAAATTAAAACCGTACAAA
*
59032 CAGTTTTTATATCACAATTTTGAGAT
906 CAGTTTTTACATCACAA-TTTGAGAT
* * * *
59058 TGTGCATATGGTTTTTATGCCCATATTTCG-TCAGAAATGGAATTTTTGATTTTTTTTTAACTCC
1 CGTGCAGATGGTTTTTATGCCCATAATT-GTTCAGAAAT-GAAATTTTGA--TTTTTTTAACTCC
* * * *
59122 AAAATACTTCGTGACTTGCACCTAACACCGTGAAAATTTAAAATCAATGCAGGTTTTCATGTGTC
62 AAAATACTTCATGACTTGCACCTAACACCGTGAAAA-TTAAAACCAATGCAGGTTATCATGTTTC
* * * * *
59187 TGTGATGACCAAGTTTAAAACTATTTATTTCCATTTAAAAAGTTTCTAAAACAACATTTCATACT
126 TGTGATGAGCGAGTTTAAAACTATTCATTTCCATTTAAAAACTTACTAAAACAACATTTCATACT
* * *
59252 TTTAAAGCTCGACTACAGCATAAATAGTTTCCAAACCAACACGTAAAACCTTAAAAAGTGTAGAG
191 TTTAAAGCTCGAATACAGCATAAATAGTTTCCAAACCAA-ACGTAAAAGCTTCAAAAGTGTAGAG
* *
59317 CTTTGAGTTTGTGTGTAATGTATAAAAACAAGTTAGCACACAGTTAATTGCATCAAA-TTCCAAT
255 CTTTGAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATTGCATCAAAGTGCCAAT
*
59381 AACGATTTCACAAATGACATCCAAATATCACCAGCATCCCACAAATTCCCTGGAGCACCCATGAA
320 AACGATTTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTGGAGCACCCATGAA
* * *
59446 TTCTCTTAAAAATACATCAAAAGCAAATAAGCAGGAAAAATTAAAACCGTGCAAATGGTTTTTTA
385 TTCTCCTAAAAATACAACAAAAGCAAATAAGAAGGAAAAATTAAAACCGTGCAAATGG-TTTTTA
* * * *
59511 TATCAAAATTTGAAATTGTGCAGATGGTTCTTACGCCCATAACTGTTCTGAAATGAAATTTTCAA
449 AATCAAAAGTTGAAATTGTACAGATGGTTCTTACGCCCATAACTGTTCAGAAATGAAATTTTCAA
* * * * *** ** * *
59576 ATTTTCAGCTCCAAATTCCTTCATGACTTACACTTAACATTGTGGGAAATTAAAACCAACGCAGT
514 ATTTTCAACTCCAAAATACTTCATGACTTACACCTAACACCATGAAAAATGAAAACCAACGCAGG
* *
59641 TTATCATGTTTCTGCGACTGAGCGAGTTTAAAACTATTCA-TTCTTATTTAAAAACTTTGTAAAA
579 TTATCATGTTTCTGCGACTGAGCGAGTTTAAAACAATTCAGTTC-CATTTAAAAACTTTGTAAAA
* * *
59705 CAAAATTTGATACTTTTAAAGCTCGAGTACAGCATAAATGGTTTCCAAAAAAAAACATAAAAGCT
643 CAAAATTTCATACTTTTAAAGCTCGACTACAGCATAAATGGTTTCCAAAAAAAAACAGAAAAGCT
* * * * *
59770 TCAAAATCGTCCAGCTTTTAGTTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATCGC
708 TCAAAAGCGTCCAGCTTTGAGTTTATGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCAC
* *
59835 ATCAAGCGCCAATAATGATTTCACAAATAACATCCAAATATCAACAGCATCCCACAAATTCACTG
773 ATCAAGCGCCAATAATGATTTCACAAACAACATCAAAATATCAACAGCATCCCACAAATTCACTG
* * *
59900 GAACACCCATGAATTCTCC-AAAAAT-TTGAGCTGATGCAAATAAGCAAGAAAAATTAAAACCGT
838 GAACACCCAGGAATTCTCCTAAAAATACT--GCTGAAGCAAATAAGCAAGAAAAATTAAAACCGT
**
59963 ACAAATGGTTTTTACATCACAATTTGAGAT
901 ACAAACAGTTTTTACATCACAATTTGAGAT
* * *
59993 CGTGCGGATGGTTTTTATGCCCATAAATGTTTAGAAATGAAATTTTGATTTTTTTAACTCCAAAA
1 CGTGCAGATGGTTTTTATGCCCATAATTGTTCAGAAATGAAATTTTGATTTTTTTAACTCCAAAA
* * *
60058 TACTTCATGACTTGCACCTAAC-CCATGGAAAATGAAAACCAATGCAAGTTATCATGTTTCTGTG
66 TACTTCATGACTTGCACCTAACACCGT-GAAAATTAAAACCAATGCAGGTTATCATGTTTCTGTG
* * * *
60122 ATTGAGCGAGTTTAAAACTATTCAGTTCTATTTAAAAACTTCCCAAAACAACATTTCATACTTTT
130 A-TGAGCGAGTTTAAAACTATTCATTTCCATTTAAAAACTTACTAAAACAACATTTCATACTTTT
* * * *
60187 AAAGCTTGAATACAGCATAAATGGTTTCCAAACCAAAACGTGAAAGCTTCAAAAGTGTCGAGCTT
194 AAAGCTCGAATACAGCATAAATAGTTTCCAAACC-AAACGTAAAAGCTTCAAAAGTGTAGAGCTT
*
60252 TTAGTTTGTGCGTAATGTATAAAAACAAGTTA
258 TGAGTTTGTGCGTAATGTATAAAAACAAGTTA
60284 AAGCAAATAA
Statistics
Matches: 1067, Mismatches: 144, Indels: 33
0.86 0.12 0.03
Matches are distributed among these distances:
931 31 0.03
932 183 0.17
933 2 0.00
934 11 0.01
935 196 0.18
936 498 0.47
937 77 0.07
938 68 0.06
939 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (930 bp):
CGTGCAGATGGTTTTTATGCCCATAATTGTTCAGAAATGAAATTTTGATTTTTTTAACTCCAAAA
TACTTCATGACTTGCACCTAACACCGTGAAAATTAAAACCAATGCAGGTTATCATGTTTCTGTGA
TGAGCGAGTTTAAAACTATTCATTTCCATTTAAAAACTTACTAAAACAACATTTCATACTTTTAA
AGCTCGAATACAGCATAAATAGTTTCCAAACCAAACGTAAAAGCTTCAAAAGTGTAGAGCTTTGA
GTTTGTGCGTAATGTATAAAAACAAGTTAGCACACAGTTAATTGCATCAAAGTGCCAATAACGAT
TTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTGGAGCACCCATGAATTCTCC
TAAAAATACAACAAAAGCAAATAAGAAGGAAAAATTAAAACCGTGCAAATGGTTTTTAAATCAAA
AGTTGAAATTGTACAGATGGTTCTTACGCCCATAACTGTTCAGAAATGAAATTTTCAAATTTTCA
ACTCCAAAATACTTCATGACTTACACCTAACACCATGAAAAATGAAAACCAACGCAGGTTATCAT
GTTTCTGCGACTGAGCGAGTTTAAAACAATTCAGTTCCATTTAAAAACTTTGTAAAACAAAATTT
CATACTTTTAAAGCTCGACTACAGCATAAATGGTTTCCAAAAAAAAACAGAAAAGCTTCAAAAGC
GTCCAGCTTTGAGTTTATGCATAATGTATAAAAACAAGTTAGCACACAGTTAATCACATCAAGCG
CCAATAATGATTTCACAAACAACATCAAAATATCAACAGCATCCCACAAATTCACTGGAACACCC
AGGAATTCTCCTAAAAATACTGCTGAAGCAAATAAGCAAGAAAAATTAAAACCGTACAAACAGTT
TTTACATCACAATTTGAGAT
Found at i:61411 original size:20 final size:21
Alignment explanation
Indices: 61383--61421 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
61373 AAATATCAAC
61383 AGCATCCCACAAATTCCCTGG
1 AGCATCCCACAAATTCCCTGG
**
61404 AGCA-CCCATGAATTCCCT
1 AGCATCCCACAAATTCCCT
61422 TAAAAATGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.28, C:0.38, G:0.13, T:0.21
Consensus pattern (21 bp):
AGCATCCCACAAATTCCCTGG
Found at i:61503 original size:232 final size:231
Alignment explanation
Indices: 61097--61536 Score: 659
Period size: 232 Copynumber: 1.9 Consensus size: 231
61087 TTAGCGCATG
* * *
61097 GTTAATCACATCAAGCTCCAACAATGATTTCACAAATGACGTCCAAATATCAACAGCATCCCACA
1 GTTAATCACATCAAGCGCCAACAACGATTTCACAAATGACATCCAAATATCAACAGCATCCCACA
** * *
61162 AATTCCCTGGAGCACCCATGAATTCTCCTAAAAATTTTGCTGACGCAAATAAGAATGAAAAATTA
66 AATTCCCTGGAGCACCCATGAATTCTCCTAAAAATCATGCTAAAGCAAATAAGAATGAAAAATTA
* *
61227 AAACCATGCAAATGGTTTTTATATCACAATTTGAGATTGTGCAGATAGTTTTTATGCCCATAATT
131 AAAACATGCAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATAGTTTTTATG-CCATAATT
*
61292 GGTGAGAAATGAAAATTTCAAAGCTTTAAAGCACACA
195 GGTCAGAAATGAAAATTTCAAAGCTTTAAAGCACACA
* * * *
61329 GTTAATCGCATCAAGCGCCAATAACGATTTCGCAAATGACATCTAAATATCAACAGCATCCCACA
1 GTTAATCACATCAAGCGCCAACAACGATTTCACAAATGACATCCAAATATCAACAGCATCCCACA
* *
61394 AATTCCCTGGAGCACCCATGAATTC-CCTTAAAAATGCAT-CTAAAGCAAATAAGCATGAAATAT
66 AATTCCCTGGAGCACCCATGAATTCTCC-TAAAAAT-CATGCTAAAGCAAATAAGAATGAAAAAT
* * *
61457 TAAAAACGTTCAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATGGTTTTTATGCCATAAT
129 TAAAAACATGCAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATAGTTTTTATGCCATAAT
*
61522 TGTTCAGAAATGAAA
194 TGGTCAGAAATGAAA
61537 TTTTGATATT
Statistics
Matches: 186, Mismatches: 20, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
231 22 0.12
232 163 0.88
233 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.28
Consensus pattern (231 bp):
GTTAATCACATCAAGCGCCAACAACGATTTCACAAATGACATCCAAATATCAACAGCATCCCACA
AATTCCCTGGAGCACCCATGAATTCTCCTAAAAATCATGCTAAAGCAAATAAGAATGAAAAATTA
AAAACATGCAAATGGTTTTTATATCACAATTTGAAATTGTGCAGATAGTTTTTATGCCATAATTG
GTCAGAAATGAAAATTTCAAAGCTTTAAAGCACACA
Found at i:62324 original size:640 final size:627
Alignment explanation
Indices: 61094--62342 Score: 1918
Period size: 640 Copynumber: 2.0 Consensus size: 627
61084 AAGTTAGCGC
*
61094 ATGGTTAATCACATCAAGCTCCAACAATGATTTCACAAATGACGTCCAAATATCAACAGCATCCC
1 ATGGTTAATCACAACAAGCTCCAACAATGATTTCACAAATGACGTCCAAATATCAACAGCATCCC
* *
61159 ACAAATTCCCTGGAGCACCCATGAATTCTCCTAAAAATTTTGCTGACGCAAATAAGAATGAAAAA
66 ACAAATTCCCTGGAGCACCCATGAATTCTCCCAAAAATTCTGCTGACGCAAATAAGAATGAAAAA
*
61224 TTAAAACCATGCAAATGGTTTTTATATCACAATTTGAGATTGTGCAGATAGTTTTTATGCCCATA
131 TTAAAACCATGCAAATGATTTTTATATCACAATTTGAGATTGTGCAGATAGTTTTTATGCCCATA
* *
61289 ATTGGTGAGAAATGAAAATTTCAAAGCTTTAAAGCACACAGTTAATCGCATCAAGCGCCAATAAC
196 ATTGGTCAGAAATGAAAATTTCAAAGCTTTAAAGCACACAATTAATCGCATCAAGCGCCAATAAC
* *
61354 GATTTCGCAAATGACATCTAAATATCAACAGCATCCCACAAATTCCCTGGAGCACCCATGAATTC
261 GATTTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTGGAGCACCCATGAATTC
* * *
61419 CCTTAAAAATGCATCTAAAGCAAATAAGCATGAAATATTAAAAACGTTCAAATGGTTTTTATATC
326 CCTTAAAAATGCATCTAAAGCAAATAAGCATAAAAAATTAAAAACCTTCAAATGGTTTTTATATC
* *
61484 ACAATTTGAAATTGTGCAGATGGTTTTTATGCCATAATTGTTCAGAAATGAAATTTTGATATTTT
391 ACAATTTGAAATTGTGCAGATGATTTTTATGCCATAATTGTTCAGAAAGGAAATTTTGATATTTT
* * * * * *
61549 TAGCTCTAAAATCCTTCATGTCTTACCATTAACACCGTGAAAAATAAAAACCAATGTAGGTTAAC
456 GAGCGCCAAAATCCTTCATGACTTACCATTAACACCGGGAAAAATAAAAACCAATGGAGGTTAAC
* * * * * * * *
61614 ATGTTTCAGTGTTTGAGCAAGTTTAAAACGTTGGGTTGAAGATATTGATTTCCATTTAAAAGCCT
521 ATGTTCCACTATTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCATTTCCATTTAAAAACCT
61679 GCTAAAACAACATTTCATACTTTTGGAGCTCGATTCCAGCAA
586 GCTAAAACAACATTTCATACTTTTGGAGCTCGATTCCAGCAA
61721 ATGGTTAATCACAACAAGCTCCAACAATGATTTCACAAATGACGTCCAAATATCAACAGCATCCC
1 ATGGTTAATCACAACAAGCTCCAACAATGATTTCACAAATGACGTCCAAATATCAACAGCATCCC
61786 ACAAATTCCCTGGAGCACCCATGAATTCTCCCAAAAATTCTGCTGACGCAAATAAGAATGAAAAA
66 ACAAATTCCCTGGAGCACCCATGAATTCTCCCAAAAATTCTGCTGACGCAAATAAGAATGAAAAA
*
61851 TTAAAATCATGCAAATGATTTTTATATCACAATTTGAGATTGTGCAGATAGTTTTTATGCCCATA
131 TTAAAACCATGCAAATGATTTTTATATCACAATTTGAGATTGTGCAGATAGTTTTTATGCCCATA
*
61916 ATTGGTCAGAAATGAAAATTTCAAAGCAAAATAGAAAAGCTTTAAAGCACACAATTAATCGCATT
196 ATTGGTCAGAAATGAAAATTT-----C--------AAAGCTTTAAAGCACACAATTAATCGCATC
* * * *
61981 AAGTGCCAATAATGATTTCACAAATGACATCCAAGTATCAACAGCATCCCACAATTTCCCTGGAG
248 AAGCGCCAATAACGATTTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTGGAG
62046 CACCCATGAATTCTCC-TAAAAATGCATCTAAAGCAAATAAGCATAAAAAATT-AAAACCTTACA
313 CACCCATGAATTC-CCTTAAAAATGCATCTAAAGCAAATAAGCATAAAAAATTAAAAACCTT-CA
62109 AATGG-TTTTATATCACAATTTGAAATTGTGCAGATGATTTTTATGCCCATAATTGTTCAGAAAG
376 AATGGTTTTTATATCACAATTTGAAATTGTGCAGATGATTTTTATG-CCATAATTGTTCAGAAAG
*
62173 GAAATTTTGATATTTTGAGCGCCAAAATCCTTCATGACTTA-CACTTAATACCGGGAAAAACT-A
440 GAAATTTTGATATTTTGAGCGCCAAAATCCTTCATGACTTACCA-TTAACACCGGGAAAAA-TAA
* * **
62236 AAACCAATGCGA-GTTATCATGTTCCTCTATTTGAGTGAGTTTAAAACATTGGATTCAATG-TAT
503 AAACCAATG-GAGGTTAACATGTTCCACTATTTGAGCAAGTTTAAAACATTGGATTCAA-GATAT
*
62299 TCATTTCCATTTAAAAACTTGCTAAAACAACATTTCATACTTTT
566 TCATTTCCATTTAAAAACCTGCTAAAACAACATTTCATACTTTT
62343 AAAGCTCTAC
Statistics
Matches: 563, Mismatches: 39, Indels: 27
0.90 0.06 0.04
Matches are distributed among these distances:
627 210 0.37
632 1 0.00
639 48 0.09
640 299 0.53
641 5 0.01
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.30
Consensus pattern (627 bp):
ATGGTTAATCACAACAAGCTCCAACAATGATTTCACAAATGACGTCCAAATATCAACAGCATCCC
ACAAATTCCCTGGAGCACCCATGAATTCTCCCAAAAATTCTGCTGACGCAAATAAGAATGAAAAA
TTAAAACCATGCAAATGATTTTTATATCACAATTTGAGATTGTGCAGATAGTTTTTATGCCCATA
ATTGGTCAGAAATGAAAATTTCAAAGCTTTAAAGCACACAATTAATCGCATCAAGCGCCAATAAC
GATTTCACAAATGACATCCAAATATCAACAGCATCCCACAAATTCCCTGGAGCACCCATGAATTC
CCTTAAAAATGCATCTAAAGCAAATAAGCATAAAAAATTAAAAACCTTCAAATGGTTTTTATATC
ACAATTTGAAATTGTGCAGATGATTTTTATGCCATAATTGTTCAGAAAGGAAATTTTGATATTTT
GAGCGCCAAAATCCTTCATGACTTACCATTAACACCGGGAAAAATAAAAACCAATGGAGGTTAAC
ATGTTCCACTATTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCATTTCCATTTAAAAACCT
GCTAAAACAACATTTCATACTTTTGGAGCTCGATTCCAGCAA
Found at i:62672 original size:14 final size:13
Alignment explanation
Indices: 62653--62694 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
62643 GTTATTATGA
62653 TTATATTAATTTAT
1 TTATATT-ATTTAT
62667 TTATATTATTTA-
1 TTATATTATTTAT
**
62679 GAATATTATTTAT
1 TTATATTATTTAT
62692 TTA
1 TTA
62695 AATAATATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
12 10 0.43
13 6 0.26
14 7 0.30
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (13 bp):
TTATATTATTTAT
Found at i:65359 original size:31 final size:31
Alignment explanation
Indices: 65295--65367 Score: 85
Period size: 31 Copynumber: 2.3 Consensus size: 31
65285 TATATTTTTA
* *
65295 TAAATATAAGATTAATTTAATTTATCATAAT
1 TAAATATAATATTAATTTAATTTATAATAAT
* *
65326 TAAATATAATATT-ATTTAATTATTTAATTAT
1 TAAATATAATATTAATTTAATT-TATAATAAT
65357 TAAATAATAAT
1 TAAAT-ATAAT
65368 TAATTAAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
30 8 0.22
31 23 0.64
32 5 0.14
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (31 bp):
TAAATATAATATTAATTTAATTTATAATAAT
Found at i:65514 original size:6 final size:6
Alignment explanation
Indices: 65497--65588 Score: 63
Period size: 6 Copynumber: 15.5 Consensus size: 6
65487 AACAAGTTAT
*
65497 TTAATAA TTAATA TTAATA CTTAA-A TT-ATA TTAATA TTAATA -TAATT
1 TTAAT-A TTAATA TTAATA -TTAATA TTAATA TTAATA TTAATA TTAATA
*
65544 TTAATAA TTCATA --ACA-A TTAATA TT-ATAA TTAAATA TTAATA TTA
1 TTAAT-A TTAATA TTA-ATA TTAATA TTAAT-A TT-AATA TTAATA TTA
65589 TTTACTTATA
Statistics
Matches: 69, Mismatches: 4, Indels: 25
0.70 0.04 0.26
Matches are distributed among these distances:
4 2 0.03
5 13 0.19
6 36 0.52
7 16 0.23
8 2 0.03
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (6 bp):
TTAATA
Found at i:65529 original size:17 final size:17
Alignment explanation
Indices: 65502--65588 Score: 65
Period size: 17 Copynumber: 5.0 Consensus size: 17
65492 GTTATTTAAT
65502 AATTAATATTAATACTTA
1 AATTAATATTAATA-TTA
65520 AATT-ATATTAATATT-
1 AATTAATATTAATATTA
*
65535 AATATAATTTTAATAATT-
1 AAT-TAATATTAAT-ATTA
* *
65553 CA-TAACAATTAATATTA
1 AATTAA-TATTAATATTA
65570 TAATTAAATATTAATATTA
1 -AATT-AATATTAATATTA
65589 TTTACTTATA
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
15 3 0.05
16 9 0.16
17 21 0.38
18 9 0.16
19 11 0.20
20 2 0.04
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (17 bp):
AATTAATATTAATATTA
Found at i:65584 original size:19 final size:19
Alignment explanation
Indices: 65560--65621 Score: 67
Period size: 19 Copynumber: 3.4 Consensus size: 19
65550 ATTCATAACA
65560 ATTAATATTATAATTAAAT
1 ATTAATATTATAATTAAAT
**
65579 ATTAATATTAT--TTACTT
1 ATTAATATTATAATTAAAT
*
65596 ATAAAT-TTATAATTATAAT
1 ATTAATATTATAATTA-AAT
65615 ATTAATA
1 ATTAATA
65622 ATTTGTTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
16 4 0.12
17 9 0.27
18 3 0.09
19 17 0.52
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (19 bp):
ATTAATATTATAATTAAAT
Found at i:65650 original size:11 final size:10
Alignment explanation
Indices: 65607--65692 Score: 52
Period size: 10 Copynumber: 8.6 Consensus size: 10
65597 TAAATTTATA
65607 ATTATAATAT
1 ATTATAATAT
* *
65617 -TAATAATTT
1 ATTATAATAT
*
65626 GTTAATAATA-
1 ATT-ATAATAT
65636 ATTATAATACT
1 ATTATAATA-T
65647 ATTAATAATAT
1 ATT-ATAATAT
* *
65658 ATTATAAAAA
1 ATTATAATAT
* *
65668 ATAATATTAT
1 ATTATAATAT
*
65678 AATATAATA-
1 ATTATAATAT
65687 ATTATA
1 ATTATA
65693 TTAAAATAAT
Statistics
Matches: 56, Mismatches: 15, Indels: 11
0.68 0.18 0.13
Matches are distributed among these distances:
9 18 0.32
10 20 0.36
11 12 0.21
12 6 0.11
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (10 bp):
ATTATAATAT
Found at i:66192 original size:12 final size:12
Alignment explanation
Indices: 66168--66216 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
66158 GAAATCTAAG
66168 ATAATTAATAATA
1 ATAATT-ATAATA
*
66181 TTAATTATAATA
1 ATAATTATAATA
66193 ATAATTA-AAT-
1 ATAATTATAATA
*
66203 A-AATTATATTA
1 ATAATTATAATA
66214 ATA
1 ATA
66217 TAATTATTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
9 5 0.17
10 3 0.10
11 4 0.13
12 13 0.43
13 5 0.17
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (12 bp):
ATAATTATAATA
Found at i:66213 original size:14 final size:14
Alignment explanation
Indices: 66169--66223 Score: 51
Period size: 14 Copynumber: 3.9 Consensus size: 14
66159 AAATCTAAGA
*
66169 TAAT-TAATAATAT
1 TAATATAATTATAT
*
66182 TAATTATAATAATAAT
1 TAA-TATAATTAT-AT
66198 TAA-ATAAATTATAT
1 TAATAT-AATTATAT
66212 TAATATAATTAT
1 TAATATAATTAT
66224 TTATTGAATA
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
13 3 0.08
14 14 0.39
15 14 0.39
16 5 0.14
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
TAATATAATTATAT
Found at i:66401 original size:17 final size:18
Alignment explanation
Indices: 66379--66417 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
66369 ATTATTATTA
*
66379 TTATTATATATAAT-AAT
1 TTATTATAAATAATAAAT
*
66396 TTATTATAAATTATAAAT
1 TTATTATAAATAATAAAT
66414 TTAT
1 TTAT
66418 ATTAATAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
TTATTATAAATAATAAAT
Found at i:66509 original size:16 final size:16
Alignment explanation
Indices: 66471--66521 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 16
66461 ATAATATTTT
*
66471 ATTATTAT-TATA-TA
1 ATTATTATATAAATTA
* *
66485 ATAATTATATAAATTG
1 ATTATTATATAAATTA
66501 ATTATTATATAAATTA
1 ATTATTATATAAATTA
66517 ATTAT
1 ATTAT
66522 ATTATTAATT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
14 7 0.23
15 3 0.10
16 20 0.67
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATTATTATATAAATTA
Found at i:66736 original size:30 final size:32
Alignment explanation
Indices: 66683--66742 Score: 90
Period size: 30 Copynumber: 1.9 Consensus size: 32
66673 TATAATATTG
66683 TAATTTGTTATTACTATTAATAATTAATAAAT
1 TAATTTGTTATTACTATTAATAATTAATAAAT
66715 TAATTTGTT-TTA-TCA-TAATAATTAATAA
1 TAATTTGTTATTACT-ATTAATAATTAATAA
66743 CTATTTGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
30 14 0.52
31 4 0.15
32 9 0.33
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.50
Consensus pattern (32 bp):
TAATTTGTTATTACTATTAATAATTAATAAAT
Found at i:67291 original size:13 final size:13
Alignment explanation
Indices: 67273--67301 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
67263 AATATATAAT
67273 TAATCTAATTAGA
1 TAATCTAATTAGA
67286 TAATCTAATTAGA
1 TAATCTAATTAGA
67299 TAA
1 TAA
67302 GTTATTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.38
Consensus pattern (13 bp):
TAATCTAATTAGA
Found at i:67578 original size:21 final size:21
Alignment explanation
Indices: 67546--67586 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
67536 AATCAAAATA
67546 ATTTTAAATAATTAT-TATTT
1 ATTTTAAATAATTATATATTT
*
67566 ATTTATAATTAATTATATATT
1 ATTT-TAAATAATTATATATT
67587 AATATATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 10 0.56
22 4 0.22
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
ATTTTAAATAATTATATATTT
Found at i:67766 original size:23 final size:23
Alignment explanation
Indices: 67722--67767 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
67712 CACAAATCTA
*
67722 AAAATAACTATATTTAATTTAAT
1 AAAATAACTATATATAATTTAAT
*
67745 AAAATAATTA-ATATAATGTTAAT
1 AAAATAACTATATATAAT-TTAAT
67768 TTATTTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (23 bp):
AAAATAACTATATATAATTTAAT
Found at i:68079 original size:14 final size:14
Alignment explanation
Indices: 68057--68153 Score: 54
Period size: 14 Copynumber: 6.7 Consensus size: 14
68047 ATTATTTATT
*
68057 ATATTATAATAATA
1 ATATAATAATAATA
*
68071 ATATAATAATTATA
1 ATATAATAATAATA
*
68085 ATATATTTGAATTAAT-
1 ATATA-AT-AA-TAATA
*
68101 ATATAAT-TTAATA
1 ATATAATAATAATA
* *
68114 ATATAGTTAATATTA
1 ATATA-ATAATAATA
* **
68129 TATATAAAAATTTTA
1 -ATATAATAATAATA
68144 ATATAATAAT
1 ATATAATAAT
68154 TATATTAATT
Statistics
Matches: 63, Mismatches: 13, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
12 4 0.06
13 5 0.08
14 27 0.43
15 12 0.19
16 12 0.19
17 3 0.05
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (14 bp):
ATATAATAATAATA
Found at i:68087 original size:17 final size:17
Alignment explanation
Indices: 68065--68187 Score: 57
Period size: 17 Copynumber: 7.3 Consensus size: 17
68055 TTATATTATA
68065 ATAATAA-TATAATAATT
1 ATAATAATTATAATAA-T
68082 ATAATATATT-TGAATTAAT
1 ATAATA-ATTAT-AA-TAAT
68101 AT-ATAATT-TAATAAT
1 ATAATAATTATAATAAT
* *
68116 ATAGTTAA-TATTAT-AT
1 ATA-ATAATTATAATAAT
*
68132 ATAAAAATT-T--TAAT
1 ATAATAATTATAATAAT
*
68146 ATAATAATTATATTAATT
1 ATAATAATTATAATAA-T
* *
68164 ATATTATTATATAATAAAT
1 ATAATAAT-TATAAT-AAT
68183 ATAAT
1 ATAAT
68188 CTAAAATAAT
Statistics
Matches: 82, Mismatches: 9, Indels: 28
0.69 0.08 0.24
Matches are distributed among these distances:
13 1 0.01
14 10 0.12
15 10 0.12
16 9 0.11
17 19 0.23
18 12 0.15
19 16 0.20
20 5 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (17 bp):
ATAATAATTATAATAAT
Found at i:68130 original size:27 final size:25
Alignment explanation
Indices: 68066--68132 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 25
68056 TATATTATAA
*
68066 TAATAATATAATAATTATAATATATT
1 TAATAATAT-ATAATTATAATATAGT
68092 TGAATTAATATATAATTTAATAATATAGT
1 T-AA-TAATATATAA-TT-ATAATATAGT
*
68121 TAATATTATATA
1 TAATAATATATA
68133 TAAAAATTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
26 1 0.03
27 14 0.40
28 10 0.29
29 10 0.29
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (25 bp):
TAATAATATATAATTATAATATAGT
Found at i:69555 original size:14 final size:14
Alignment explanation
Indices: 69521--69561 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
69511 TTACTTAAAC
69521 TAATAA-AA-TATT
1 TAATAATAATTATT
69533 T-ATAATAATTATT
1 TAATAATAATTATT
*
69546 TAATATTAATTATT
1 TAATAATAATTATT
69560 TA
1 TA
69562 TAAATTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
11 4 0.16
12 3 0.12
13 5 0.20
14 13 0.52
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
TAATAATAATTATT
Found at i:71348 original size:19 final size:19
Alignment explanation
Indices: 71324--71362 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
71314 TAAGAATCAT
*
71324 TAATTAATAAT-TGTATTAA
1 TAATTAACAATAT-TATTAA
71343 TAATTAACAATATTATTAA
1 TAATTAACAATATTATTAA
71362 T
1 T
71363 GGCTATTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (19 bp):
TAATTAACAATATTATTAA
Found at i:71392 original size:9 final size:9
Alignment explanation
Indices: 71378--71418 Score: 55
Period size: 9 Copynumber: 4.3 Consensus size: 9
71368 TTGAATAAAT
*
71378 TATTAATAG
1 TATTAATAA
71387 TATTAATAA
1 TATTAATAA
71396 TATTATATTAA
1 TATTA-A-TAA
71407 TATTAATAA
1 TATTAATAA
71416 TAT
1 TAT
71419 ATTTAATAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 19 0.66
10 2 0.07
11 8 0.28
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (9 bp):
TATTAATAA
Found at i:71419 original size:17 final size:18
Alignment explanation
Indices: 71387--71426 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 18
71377 TTATTAATAG
71387 TATTAATAATATTATATTAA
1 TATTAATAATA-TAT-TTAA
71407 TATTAATAATATATTTAA
1 TATTAATAATATATTTAA
71425 TA
1 TA
71427 ATCCAATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 6 0.30
19 3 0.15
20 11 0.55
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TATTAATAATATATTTAA
Found at i:72231 original size:17 final size:17
Alignment explanation
Indices: 72209--72250 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
72199 AATGACTAAT
72209 AAAAATTTCAACAAT-GA
1 AAAAATTTCAA-AATAGA
**
72226 AAAAATGACAAAATAGA
1 AAAAATTTCAAAATAGA
72243 AAAAATTT
1 AAAAATTT
72251 AGTTTATAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.64, C:0.07, G:0.07, T:0.21
Consensus pattern (17 bp):
AAAAATTTCAAAATAGA
Found at i:72290 original size:19 final size:20
Alignment explanation
Indices: 72258--72296 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
72248 TTTAGTTTAT
72258 AAAATACAACCAAAAAATAA
1 AAAATACAACCAAAAAATAA
* *
72278 AAAATATAA-CAAATAATAA
1 AAAATACAACCAAAAAATAA
72297 GATATAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.74, C:0.10, G:0.00, T:0.15
Consensus pattern (20 bp):
AAAATACAACCAAAAAATAA
Found at i:72330 original size:25 final size:25
Alignment explanation
Indices: 72274--72330 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
72264 CAACCAAAAA
*
72274 ATAAAAA-ATATAACAAATAATAAG
1 ATAAAAATATATAAAAAATAATAAG
* *
72298 ATATAAATATATAAAAAATCA-AAG
1 ATAAAAATATATAAAAAATAATAAG
72322 ATCAAAAAT
1 AT-AAAAAT
72331 TAAAAGAAGA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 11 0.41
25 16 0.59
ACGTcount: A:0.68, C:0.05, G:0.04, T:0.23
Consensus pattern (25 bp):
ATAAAAATATATAAAAAATAATAAG
Found at i:72342 original size:18 final size:18
Alignment explanation
Indices: 72319--72354 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
72309 TAAAAAATCA
*
72319 AAGATCAAAAATTAAAAG
1 AAGATCAAAAATGAAAAG
72337 AAGATCAAAAATGAAAAG
1 AAGATCAAAAATGAAAAG
72355 GGATGACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.67, C:0.06, G:0.14, T:0.14
Consensus pattern (18 bp):
AAGATCAAAAATGAAAAG
Found at i:72486 original size:17 final size:17
Alignment explanation
Indices: 72411--72506 Score: 50
Period size: 17 Copynumber: 5.5 Consensus size: 17
72401 AAAATGTAAA
* *
72411 AAAAAAAATAAAAATAT
1 AAAAAAAAGAAAAATTT
* * *
72428 CAAAGATAGAAAAA-TT
1 AAAAAAAAGAAAAATTT
* * *
72444 AACAGAAAGAAAAAGTT
1 AAAAAAAAGAAAAATTT
* *
72461 AATACAAAATAAAAATTT
1 AA-AAAAAAGAAAAATTT
*
72479 AAAAAAAAAAAACAAGTGTT
1 AAAAAAAAGAAA-AA-T-TT
72499 AAAAAAAA
1 AAAAAAAA
72507 AGGAAACAAG
Statistics
Matches: 59, Mismatches: 15, Indels: 7
0.73 0.19 0.09
Matches are distributed among these distances:
16 12 0.20
17 22 0.37
18 14 0.24
19 1 0.02
20 10 0.17
ACGTcount: A:0.72, C:0.04, G:0.07, T:0.17
Consensus pattern (17 bp):
AAAAAAAAGAAAAATTT
Found at i:72739 original size:8 final size:8
Alignment explanation
Indices: 72728--72800 Score: 51
Period size: 9 Copynumber: 8.6 Consensus size: 8
72718 AAAAAACGAC
72728 AAAAAATT
1 AAAAAATT
72736 AAAAAATT
1 AAAAAATT
*
72744 CAAAACATT
1 -AAAAAATT
72753 ATAAAAATTT
1 A-AAAAA-TT
72763 ATAAAAATAT
1 A-AAAAAT-T
* *
72773 AAATAATG
1 AAAAAATT
72781 AAAGAAA-T
1 AAA-AAATT
72789 AAAAAA-T
1 AAAAAATT
72796 AAAAA
1 AAAAA
72801 TAAAATAAGA
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
7 9 0.17
8 15 0.28
9 19 0.35
10 11 0.20
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.23
Consensus pattern (8 bp):
AAAAAATT
Found at i:72788 original size:18 final size:16
Alignment explanation
Indices: 72765--72815 Score: 56
Period size: 13 Copynumber: 3.3 Consensus size: 16
72755 AAAAATTTAT
72765 AAAAATATAAATAATGA
1 AAAAATA-AAATAATGA
72782 AAGAAATAAAA-AAT--
1 AA-AAATAAAATAATGA
72796 AAAAATAAAATAA-GA
1 AAAAATAAAATAATGA
72811 AAAAA
1 AAAAA
72816 ATATTAAAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
13 8 0.27
14 4 0.13
15 5 0.17
16 3 0.10
17 5 0.17
18 5 0.17
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (16 bp):
AAAAATAAAATAATGA
Found at i:72810 original size:25 final size:24
Alignment explanation
Indices: 72765--72816 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
72755 AAAAATTTAT
* *
72765 AAAAATATAAATAATGAAAGAAATA
1 AAAAATAAAAATAATAAAAGAAA-A
72790 AAAAATAAAAATAA-AATAAGAAAA
1 AAAAATAAAAATAATAA-AAGAAAA
72814 AAA
1 AAA
72817 TATTAAAGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (24 bp):
AAAAATAAAAATAATAAAAGAAAA
Found at i:72817 original size:16 final size:16
Alignment explanation
Indices: 72765--72818 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
72755 AAAAATTTAT
72765 AAAAATATAAATAATGAA
1 AAAAATA-AAATAA-GAA
* *
72783 AGAAAT-AAA-AA-AT
1 AAAAATAAAATAAGAA
72796 AAAAATAAAATAAGAA
1 AAAAATAAAATAAGAA
72812 AAAAATA
1 AAAAATA
72819 TTAAAGCAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
13 6 0.21
14 3 0.10
15 4 0.14
16 11 0.38
18 5 0.17
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.17
Consensus pattern (16 bp):
AAAAATAAAATAAGAA
Found at i:73199 original size:16 final size:16
Alignment explanation
Indices: 73164--73193 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
73154 AAGAATATAA
73164 AAAATTTTAAAACAAC
1 AAAATTTTAAAACAAC
73180 AAAA-TTTAAAACAA
1 AAAATTTTAAAACAA
73194 ATAAAAATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.67, C:0.10, G:0.00, T:0.23
Consensus pattern (16 bp):
AAAATTTTAAAACAAC
Found at i:73289 original size:19 final size:19
Alignment explanation
Indices: 73258--73304 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 19
73248 AAAAGTTATT
* *
73258 GAAAAATTAT-AAAATAAA
1 GAAAAAATATAAAAAAAAA
73276 GAAAAAATACTAAAAAAAAA
1 GAAAAAATA-TAAAAAAAAA
*
73296 GACAAAATA
1 GAAAAAATA
73305 AGAAAGAATC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 8 0.33
19 1 0.04
20 15 0.62
ACGTcount: A:0.74, C:0.04, G:0.06, T:0.15
Consensus pattern (19 bp):
GAAAAAATATAAAAAAAAA
Found at i:73308 original size:30 final size:29
Alignment explanation
Indices: 73268--73325 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 29
73258 GAAAAATTAT
73268 AAAATAAAGAAAAAATACTAAAAAAAAAGAC
1 AAAATAAAGAAAAAAT-C-AAAAAAAAAGAC
* *
73299 AAAAT-AAGAAAGAATCAAAAAATAAGA
1 AAAATAAAGAAAAAATCAAAAAAAAAGA
73326 ATAAAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 10 0.40
29 1 0.04
30 9 0.36
31 5 0.20
ACGTcount: A:0.76, C:0.05, G:0.09, T:0.10
Consensus pattern (29 bp):
AAAATAAAGAAAAAATCAAAAAAAAAGAC
Found at i:73408 original size:24 final size:25
Alignment explanation
Indices: 73381--73434 Score: 62
Period size: 24 Copynumber: 2.2 Consensus size: 25
73371 AAAATAAAAG
73381 AAAAATAA-AATAAAA-TAA-AATACT
1 AAAAATAATAA-AAAAGTAAGAA-ACT
73405 AAAAA-AATAAAAAAGTAAGAAACT
1 AAAAATAATAAAAAAGTAAGAAACT
73429 AAAAAT
1 AAAAAT
73435 TAGAGAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
23 6 0.23
24 18 0.69
25 2 0.08
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.17
Consensus pattern (25 bp):
AAAAATAATAAAAAAGTAAGAAACT
Found at i:73703 original size:20 final size:22
Alignment explanation
Indices: 73665--73709 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
73655 GAAAAAAATT
73665 AAAAGTAAAAAAAGTTAAT-GA
1 AAAAGTAAAAAAAGTTAATAGA
* *
73686 AAAATTAAAAAATG-TAATAGA
1 AAAAGTAAAAAAAGTTAATAGA
73707 AAA
1 AAA
73710 TAACCAACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.69, C:0.00, G:0.11, T:0.20
Consensus pattern (22 bp):
AAAAGTAAAAAAAGTTAATAGA
Found at i:73897 original size:7 final size:7
Alignment explanation
Indices: 73866--73923 Score: 62
Period size: 7 Copynumber: 8.0 Consensus size: 7
73856 ACAAAAATAT
73866 AATAAAA
1 AATAAAA
73873 ATATAAAA
1 A-ATAAAA
*
73881 AGTAAGAA
1 AATAA-AA
73889 AATAAAA
1 AATAAAA
**
73896 AATAATG
1 AATAAAA
*
73903 AATCAAA
1 AATAAAA
73910 AATAAAA
1 AATAAAA
73917 AATAAAA
1 AATAAAA
73924 GAAGACAAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
7 28 0.68
8 13 0.32
ACGTcount: A:0.76, C:0.02, G:0.05, T:0.17
Consensus pattern (7 bp):
AATAAAA
Found at i:73934 original size:37 final size:33
Alignment explanation
Indices: 73800--73946 Score: 104
Period size: 37 Copynumber: 4.1 Consensus size: 33
73790 AATTAAACCG
*
73800 AAAT-AAAAATAAAATAAGAAAAAATATTAA-AGCA
1 AAATAAAAAATAAAA-AAGAAAAAATATGAATA--A
*
73834 AAAGAAAAAAGATAAATAAAGTACAAAAATAT-AATAA
1 AAA-TAAAAA-ATAAA-AAAG-A-AAAAATATGAATAA
*
73871 AAATATAAAAAGTAAGAAAATAAAAAATAATGAATCAA
1 AAATA-AAAAA-TAA-AAAAGAAAAAAT-ATGAAT-AA
73909 AAATAAAAAATAAAAGAAGACAAAAAT-TGAATAA
1 AAATAAAAAATAAAA-AAGA-AAAAATATGAATAA
73943 AAAT
1 AAAT
73947 GTGAAAATTG
Statistics
Matches: 94, Mismatches: 4, Indels: 30
0.73 0.03 0.23
Matches are distributed among these distances:
34 9 0.10
35 13 0.14
36 15 0.16
37 36 0.38
38 12 0.13
39 9 0.10
ACGTcount: A:0.73, C:0.03, G:0.07, T:0.17
Consensus pattern (33 bp):
AAATAAAAAATAAAAAAGAAAAAATATGAATAA
Found at i:74132 original size:19 final size:21
Alignment explanation
Indices: 74110--74155 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
74100 ACCAAAGAAG
*
74110 AAAATGCAA-AAAAAA-AAAA
1 AAAATACAAGAAAAAAGAAAA
*
74129 AAAATACAAGAAAAAAGAATA
1 AAAATACAAGAAAAAAGAAAA
74150 AAAATA
1 AAAATA
74156 AAAAGACAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 8 0.35
20 6 0.26
21 9 0.39
ACGTcount: A:0.80, C:0.04, G:0.07, T:0.09
Consensus pattern (21 bp):
AAAATACAAGAAAAAAGAAAA
Found at i:74221 original size:17 final size:17
Alignment explanation
Indices: 74194--74252 Score: 64
Period size: 17 Copynumber: 3.4 Consensus size: 17
74184 ACAGAATATA
74194 AAAAAATTTAAAACAATG
1 AAAAAA-TTAAAACAATG
**
74212 AAAAAATTAAAACAAAC
1 AAAAAATTAAAACAATG
* *
74229 AAAAAATGAAAGCATATG
1 AAAAAATTAAAACA-ATG
74247 AAAAAA
1 AAAAAA
74253 ATAAGCAAGA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
17 21 0.62
18 13 0.38
ACGTcount: A:0.71, C:0.07, G:0.07, T:0.15
Consensus pattern (17 bp):
AAAAAATTAAAACAATG
Found at i:74233 original size:18 final size:18
Alignment explanation
Indices: 74193--74234 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
74183 AACAGAATAT
*
74193 AAAAAAATTTAAAACAAT
1 AAAAAAATTTAAAACAAC
*
74211 GAAAAAA-TTAAAACAAAC
1 AAAAAAATTTAAAAC-AAC
74229 AAAAAA
1 AAAAAA
74235 TGAAAGCATA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.76, C:0.07, G:0.02, T:0.14
Consensus pattern (18 bp):
AAAAAAATTTAAAACAAC
Found at i:74419 original size:7 final size:7
Alignment explanation
Indices: 74409--74506 Score: 58
Period size: 7 Copynumber: 13.4 Consensus size: 7
74399 TTTAAAATAT
74409 AAATAAA
1 AAATAAA
74416 AAAT--A
1 AAATAAA
74421 AAATAAA
1 AAATAAA
* *
74428 CACTAAAA
1 AAAT-AAA
*
74436 AAATAAC
1 AAATAAA
*
74443 AATTAAGA
1 AAATAA-A
74451 ATAA-ACAA
1 A-AATA-AA
*
74459 AAACAAA
1 AAATAAA
74466 AAATAAA
1 AAATAAA
74473 AAAGTACAA
1 AAA-TA-AA
74482 AAATAAA
1 AAATAAA
74489 AAATTAAA
1 AAA-TAAA
*
74497 GAATAAA
1 AAATAAA
74504 AAA
1 AAA
74507 GATATAAAAA
Statistics
Matches: 70, Mismatches: 11, Indels: 20
0.69 0.11 0.20
Matches are distributed among these distances:
5 5 0.07
7 38 0.54
8 20 0.29
9 7 0.10
ACGTcount: A:0.77, C:0.06, G:0.03, T:0.14
Consensus pattern (7 bp):
AAATAAA
Found at i:74466 original size:28 final size:27
Alignment explanation
Indices: 74409--74475 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
74399 TTTAAAATAT
*
74409 AAATAAAAAATAAAATAAACACTAAAA
1 AAATAAAAAATAAAATAAACACAAAAA
* * *
74436 AAATAACAATTAAGAATAAACAAAAACAAA
1 AAATAAAAAATAA-AATAAAC-ACAA-AAA
74466 AAATAAAAAA
1 AAATAAAAAA
74476 GTACAAAAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
27 11 0.35
28 7 0.23
29 2 0.06
30 11 0.35
ACGTcount: A:0.78, C:0.07, G:0.01, T:0.13
Consensus pattern (27 bp):
AAATAAAAAATAAAATAAACACAAAAA
Found at i:74483 original size:15 final size:15
Alignment explanation
Indices: 74463--74507 Score: 63
Period size: 16 Copynumber: 2.9 Consensus size: 15
74453 AAACAAAAAC
74463 AAAAAATAAAAAAGT
1 AAAAAATAAAAAAGT
*
74478 ACAAAAATAAAAAATT
1 A-AAAAATAAAAAAGT
*
74494 AAAGAATAAAAAAG
1 AAAAAATAAAAAAG
74508 ATATAAAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
15 12 0.46
16 14 0.54
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.13
Consensus pattern (15 bp):
AAAAAATAAAAAAGT
Found at i:74506 original size:23 final size:24
Alignment explanation
Indices: 74431--74516 Score: 65
Period size: 24 Copynumber: 3.7 Consensus size: 24
74421 AAATAAACAC
*
74431 TAAAAAAAT--AACAATT-AAGAA
1 TAAAAAAATACAAAAATTAAAGAA
* *
74452 TAAACAAAA-ACAAAAAATAAAAAA
1 TAAA-AAAATACAAAAATTAAAGAA
*
74476 GTACAAAAATA-AAAAATTAAAGAA
1 -TAAAAAAATACAAAAATTAAAGAA
*
74500 TAAAAAAGATATAAAAA
1 TAAAAAA-ATACAAAAA
74517 GACAAAATGA
Statistics
Matches: 50, Mismatches: 7, Indels: 12
0.72 0.10 0.17
Matches are distributed among these distances:
21 4 0.08
22 4 0.08
23 11 0.22
24 22 0.44
25 9 0.18
ACGTcount: A:0.76, C:0.05, G:0.05, T:0.15
Consensus pattern (24 bp):
TAAAAAAATACAAAAATTAAAGAA
Found at i:74664 original size:615 final size:605
Alignment explanation
Indices: 74043--75207 Score: 1328
Period size: 615 Copynumber: 1.9 Consensus size: 605
74033 AAACAATATA
74043 AAAAATCAAAGAAAAAAAACCGAAAAAGAGAAAAGTTAATTCA-AA-ATAAAAATGAAAACCAAA
1 AAAAATCAAAG-AAAAAAA-CG-AAAA-A-AAAAG-T-A-TCAGAATATAAAAATGAAAA--AAA
74106 GAAGA-AAAT-GCAAAAAAAAAAAAAAAATACAAGAAAA-AAGAATAAAAATAA-AAAGACAAA-
56 GAA-ATAAATAG-AAAAAAAAAAAAAAAAT--AAGAAAACAAGAAT-AAAATAACAAAGA-AAAG
* * *
74166 ACAAGATTTGAAATAAAAACAG-AATATA-AAAAAAT-TTAAAACAATGAAAAAATTAAAACAAA
115 ACAAGATTTGAAATAAAAA-AGAAAAAAAGAAAAAATATTAAAACAATGAAAAAATGAAAACAAA
*
74228 CAAAAAATGAAAGCATATGAAAAAAATAAGC-AAGAAA-AAAATTTTTGAAGGAAAAAAGTTACT
179 -AAAAAATGAAAGCATATGAAAAAAAAAAGCAAAGAAAGAAAA-TTTTGAAGGAAAAAAGTTACT
**
74291 GAAAAATTATAAAATAGAACAAAAAATAGGAAAAAAAAAGACAATAAGAAAAT-AAAATAA-AAA
242 GAAAAATTATAAAATAGAACAAAAAATACAAAAAAAAAAGACAATAAGAAAATGAAAA-AATAAA
* *
74354 A-GATTCACAATAAA-AATAAAAAATTTTTGAAGTTTATACAAATTTTTTAAAATATAAATAAAA
306 ATGATTCA-AA-AAATAA-AAAAAAATTTT-AACTTTAT--AAATTTTTTAAAATATAAATAAAA
* * * * * * *
74417 AATAAAATAAACACTAAA-AAAATAACAATTAAGAATAAACA-A-AAACAAA-AAATAAAAAAGT
365 AATAAAAGAAAAAATAAATAAAATAA-AAATAA-AATAAA-ATAGAAAAAAAGAAAAAAAAAAGG
* * *
74478 ACA-AAAATAAAAAATTAAAGAATAAAAAAGATATAAAAAGACAAAATGAATAAAAATTTGAAAT
427 A-AGAAAATAAAAAATTAAAGAATAAAAAA-AGATAAAAAGACAAAATGAAGAAAAATTTCAAAT
*
74542 ATAAAATATAAAAAACTTTTAGTTTAGAATATACAAAGAAAAACAAAAAAACAAGAAAACATTGC
490 ATAAAATAGAAAAAACTTTTAGTTTAGAATATACAAAGAAAAACAAAAAAACAAGAAAACATTGC
74607 AAAGTCAAAGCCAAAAATTAAAAAAGAAAAAGGTTATTGCAAAATAAAAAT
555 AAAGTCAAAGCCAAAAATTAAAAAAGAAAAAGGTTATTGCAAAATAAAAAT
* * * * * * *
74658 AAAAATCAAAGGAGAAAATGAAAAAAAAAGTATGAGAATTTAAAAATGCAAATAAGAAATAAATA
1 AAAAATCAAAGAAAAAAACGAAAAAAAAAGTATCAGAATATAAAAATGAAAAAAAGAAATAAATA
****** * *
74723 GAAATTTGTGAAAAAAATAAGAAAAGCAAGAATAGAATAACAATGAAAAGACAAGATTTGAAATA
66 GAAAAAAAAAAAAAAAATAAGAAAA-CAAGAATAAAATAACAAAGAAAAGACAAGATTTGAAATA
* * * * *
74788 AAAAAGAAAAAAAAAAGTAAAAAATATTAAAAGAATGAAATAATGAAAACATATAAAAATGTAAG
130 AAAAAG---AAAAAAAG-AAAAAATATTAAAACAATGAAAAAATGAAAACAAAAAAAAATGAAAG
* **
74853 CATGTGAAAAAAAAAAGCAAAAAGAAAGAAAATTTTGAAGGAAAAAAGTTGTTGAAAAATTATAA
191 CATATGAAAAAAAAAAGC--AAAGAAAGAAAATTTTGAAGGAAAAAAGTTACTGAAAAATTATAA
74918 AATAGAACAAAAAATACAAAAAAAAAAGACAATAAGAAAATGAAAAAATTAAAATGATTCAAAAA
254 AATAGAACAAAAAATACAAAAAAAAAAGACAATAAGAAAATGAAAAAA-TAAAATGATTCAAAAA
*
74983 ATTAAAAAAAAATTTTAACTTTATAAATTTTTTAAAATATAAATAAAAAATAAACGAAAAAATAA
318 A-TAAAAAAAAATTTTAACTTTATAAATTTTTTAAAATATAAATAAAAAATAAAAGAAAAAATAA
* * * * **
75048 ATTAAGTAAAAATAAAATAAAATAGTAAAAAAAGAAAAAAAAAAGGAAGAATATAAAAATTTAGC
382 ATAAAATAAAAATAAAATAAAATAG-AAAAAAAGAAAAAAAAAAGGAAGAAAATAAAAAATTAAA
* * * *
75113 TAATAAAAAAAGATAAAAAGACAAGATGAAGAAAATTTTCAAATATAAAATAGAAAAAAGTTTTA
446 GAATAAAAAAAGATAAAAAGACAAAATGAAGAAAAATTTCAAATATAAAATAGAAAAAACTTTTA
*
75178 TTTTAGAATATACAAAGAAAAACAAAAAAA
511 GTTTAGAATATACAAAGAAAAACAAAAAAA
75208 AATTTAACAA
Statistics
Matches: 465, Mismatches: 54, Indels: 62
0.80 0.09 0.11
Matches are distributed among these distances:
605 7 0.02
606 12 0.03
607 51 0.11
608 4 0.01
609 12 0.03
610 9 0.02
611 1 0.00
612 38 0.08
613 31 0.07
614 48 0.10
615 178 0.38
616 50 0.11
617 16 0.03
618 8 0.02
ACGTcount: A:0.67, C:0.05, G:0.10, T:0.19
Consensus pattern (605 bp):
AAAAATCAAAGAAAAAAACGAAAAAAAAAGTATCAGAATATAAAAATGAAAAAAAGAAATAAATA
GAAAAAAAAAAAAAAAATAAGAAAACAAGAATAAAATAACAAAGAAAAGACAAGATTTGAAATAA
AAAAGAAAAAAAGAAAAAATATTAAAACAATGAAAAAATGAAAACAAAAAAAAATGAAAGCATAT
GAAAAAAAAAAGCAAAGAAAGAAAATTTTGAAGGAAAAAAGTTACTGAAAAATTATAAAATAGAA
CAAAAAATACAAAAAAAAAAGACAATAAGAAAATGAAAAAATAAAATGATTCAAAAAATAAAAAA
AAATTTTAACTTTATAAATTTTTTAAAATATAAATAAAAAATAAAAGAAAAAATAAATAAAATAA
AAATAAAATAAAATAGAAAAAAAGAAAAAAAAAAGGAAGAAAATAAAAAATTAAAGAATAAAAAA
AGATAAAAAGACAAAATGAAGAAAAATTTCAAATATAAAATAGAAAAAACTTTTAGTTTAGAATA
TACAAAGAAAAACAAAAAAACAAGAAAACATTGCAAAGTCAAAGCCAAAAATTAAAAAAGAAAAA
GGTTATTGCAAAATAAAAAT
Found at i:75066 original size:20 final size:19
Alignment explanation
Indices: 75041--75078 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
75031 AATAAACGAA
*
75041 AAAATAAATTAAGTAAAAAT
1 AAAATAAAAT-AGTAAAAAT
75061 AAAATAAAATAGTAAAAA
1 AAAATAAAATAGTAAAAA
75079 AAGAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (19 bp):
AAAATAAAATAGTAAAAAT
Found at i:75079 original size:20 final size:20
Alignment explanation
Indices: 75016--75078 Score: 62
Period size: 19 Copynumber: 3.2 Consensus size: 20
75006 TAAATTTTTT
75016 AAAATATAAATAAAA-AA-TA
1 AAAATA-AAATAAAATAAGTA
*
75035 AACGAA-AAAATAAATTAAGTA
1 AA--AATAAAATAAAATAAGTA
75056 AAAATAAAATAAAAT-AGTA
1 AAAATAAAATAAAATAAGTA
75075 AAAA
1 AAAA
75079 AAGAAAAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 19 0.51
20 12 0.32
21 6 0.16
ACGTcount: A:0.75, C:0.02, G:0.05, T:0.19
Consensus pattern (20 bp):
AAAATAAAATAAAATAAGTA
Found at i:75250 original size:13 final size:12
Alignment explanation
Indices: 75232--75294 Score: 51
Period size: 13 Copynumber: 5.3 Consensus size: 12
75222 AAAAAAGACA
75232 AAAAAACAAAGAT
1 AAAAAACAAA-AT
*
75245 AAAAAATAAAAT
1 AAAAAACAAAAT
*
75257 AAAAAATCAATAT
1 AAAAAA-CAAAAT
* *
75270 AAAATA-TAAAT
1 AAAAAACAAAAT
75281 -AAAAACAAAA-
1 AAAAAACAAAAT
75291 AAAA
1 AAAA
75295 GTACACAAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
10 4 0.10
11 9 0.23
12 8 0.21
13 18 0.46
ACGTcount: A:0.79, C:0.05, G:0.02, T:0.14
Consensus pattern (12 bp):
AAAAAACAAAAT
Found at i:75258 original size:12 final size:12
Alignment explanation
Indices: 75232--75285 Score: 56
Period size: 13 Copynumber: 4.4 Consensus size: 12
75222 AAAAAAGACA
*
75232 AAAAAACAAAGAT
1 AAAAAATAAA-AT
75245 AAAAAATAAAAT
1 AAAAAATAAAAT
*
75257 AAAAAAT-CAAT
1 AAAAAATAAAAT
*
75268 ATAAAATATAAAT
1 AAAAAATA-AAAT
75281 AAAAA
1 AAAAA
75286 CAAAAAAAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
11 9 0.26
12 9 0.26
13 16 0.47
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.17
Consensus pattern (12 bp):
AAAAAATAAAAT
Found at i:75260 original size:25 final size:24
Alignment explanation
Indices: 75213--75289 Score: 70
Period size: 23 Copynumber: 3.2 Consensus size: 24
75203 AAAAAAATTT
* * *
75213 AACAAATATAAAAAAGACA-AAAA
1 AACAAAGATAAAAAATAAATAAAA
75236 AACAAAGATAAAAAATAAAATAAAA
1 AACAAAGATAAAAAAT-AAATAAAA
* *
75261 AATC-AATATAAAATATAAAT-AAA
1 AA-CAAAGATAAAAAATAAATAAAA
75284 AACAAA
1 AACAAA
75290 AAAAAGTACA
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
22 1 0.02
23 21 0.47
24 6 0.13
25 16 0.36
26 1 0.02
ACGTcount: A:0.77, C:0.06, G:0.03, T:0.14
Consensus pattern (24 bp):
AACAAAGATAAAAAATAAATAAAA
Found at i:76403 original size:20 final size:20
Alignment explanation
Indices: 76366--76403 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
76356 AAATATTTTG
*
76366 ATTTGAATTTATTGATTTAA
1 ATTTGAATTTATTAATTTAA
76386 ATTTAGAATTT-TTAATTT
1 ATTT-GAATTTATTAATTT
76404 TTTAATTGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (20 bp):
ATTTGAATTTATTAATTTAA
Found at i:77029 original size:20 final size:20
Alignment explanation
Indices: 76987--77030 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
76977 AGAAAAGTAT
* **
76987 AAAAACGAATAAAAAATTTC
1 AAAAACGAAGAAAAAATGAC
*
77007 AAAAATGAAGAAAAAATGAC
1 AAAAACGAAGAAAAAATGAC
77027 AAAA
1 AAAA
77031 TAGAAAAAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.70, C:0.07, G:0.09, T:0.14
Consensus pattern (20 bp):
AAAAACGAAGAAAAAATGAC
Found at i:77103 original size:25 final size:23
Alignment explanation
Indices: 77067--77123 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 23
77057 CAAACAAATA
77067 ATAAAAAATATAACAAATAAT-AAG
1 ATAAAAAATATAA-AAA-AATGAAG
*
77091 ATAAAAAGATATAAAAAATTGAAG
1 ATAAAAA-ATATAAAAAAATGAAG
77115 ATAAAAAAT
1 ATAAAAAAT
77124 GAAAAGGGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
23 4 0.13
24 20 0.67
25 6 0.20
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.21
Consensus pattern (23 bp):
ATAAAAAATATAAAAAAATGAAG
Found at i:77427 original size:19 final size:19
Alignment explanation
Indices: 77403--77439 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
77393 AACCAACATC
77403 GATAAATAAAA-AAAAAAAA
1 GATAAA-AAAATAAAAAAAA
77422 GATAAAAAAATAAAAAAA
1 GATAAAAAAATAAAAAAA
77440 TCCAAAACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.84, C:0.00, G:0.05, T:0.11
Consensus pattern (19 bp):
GATAAAAAAATAAAAAAAA
Found at i:77428 original size:15 final size:16
Alignment explanation
Indices: 77408--77437 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
77398 ACATCGATAA
77408 ATAAAAAAA-AAAAAG
1 ATAAAAAAATAAAAAG
77423 ATAAAAAAATAAAAA
1 ATAAAAAAATAAAAA
77438 AATCCAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.87, C:0.00, G:0.03, T:0.10
Consensus pattern (16 bp):
ATAAAAAAATAAAAAG
Found at i:77438 original size:8 final size:8
Alignment explanation
Indices: 77406--77440 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
77396 CAACATCGAT
77406 AAATAAAA
1 AAATAAAA
77414 AAA-AAAA
1 AAATAAAA
*
77421 AGATAAAA
1 AAATAAAA
77429 AAATAAAA
1 AAATAAAA
77437 AAAT
1 AAAT
77441 CCAAAACATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 6 0.25
8 18 0.75
ACGTcount: A:0.86, C:0.00, G:0.03, T:0.11
Consensus pattern (8 bp):
AAATAAAA
Found at i:77539 original size:41 final size:41
Alignment explanation
Indices: 77464--77567 Score: 111
Period size: 41 Copynumber: 2.5 Consensus size: 41
77454 AAAATTTATG
* * *
77464 AAAATATAAATAAAGAAACAAAAAATAAACCAAAATAAAAAATA
1 AAAATA-AAAT-AAGAAA-AAATAATAAACCAAAACAAAAAAGA
* *
77508 AAAATAAAATAAGAAAAAATATTAAAGCAAAACAAAAAAGA
1 AAAATAAAATAAGAAAAAATAATAAACCAAAACAAAAAAGA
* *
77549 TAAATAAAGTAA-AAAAAAT
1 AAAATAAAATAAGAAAAAAT
77568 CAGTATCAAT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
40 7 0.13
41 30 0.57
42 6 0.11
43 4 0.08
44 6 0.11
ACGTcount: A:0.76, C:0.05, G:0.05, T:0.14
Consensus pattern (41 bp):
AAAATAAAATAAGAAAAAATAATAAACCAAAACAAAAAAGA
Found at i:78094 original size:10 final size:11
Alignment explanation
Indices: 78058--78094 Score: 51
Period size: 10 Copynumber: 3.5 Consensus size: 11
78048 TAAAATAAAA
78058 CAAAAAAT-AG
1 CAAAAAATAAG
78068 CAAAAAATAAG
1 CAAAAAATAAG
78079 ACAAAAAATAAG
1 -CAAAAAATAAG
78091 -AAAA
1 CAAAA
78095 TGAAAAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 12 0.48
11 2 0.08
12 11 0.44
ACGTcount: A:0.76, C:0.08, G:0.08, T:0.08
Consensus pattern (11 bp):
CAAAAAATAAG
Found at i:78102 original size:16 final size:16
Alignment explanation
Indices: 78081--78111 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
78071 AAAATAAGAC
*
78081 AAAAAATAAGAAAATG
1 AAAAAATAAAAAAATG
78097 AAAAAATAAAAAAAT
1 AAAAAATAAAAAAAT
78112 TTTGAACTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.00, G:0.06, T:0.13
Consensus pattern (16 bp):
AAAAAATAAAAAAATG
Found at i:78110 original size:10 final size:12
Alignment explanation
Indices: 78049--78091 Score: 63
Period size: 12 Copynumber: 3.8 Consensus size: 12
78039 GAAAAATTAT
*
78049 AAAATAAAACAA
1 AAAATAAGACAA
78061 AAAAT-AG-CAA
1 AAAATAAGACAA
78071 AAAATAAGACAA
1 AAAATAAGACAA
78083 AAAATAAGA
1 AAAATAAGA
78092 AAATGAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
10 8 0.29
11 3 0.11
12 17 0.61
ACGTcount: A:0.77, C:0.07, G:0.07, T:0.09
Consensus pattern (12 bp):
AAAATAAGACAA
Found at i:78403 original size:23 final size:23
Alignment explanation
Indices: 78367--78422 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
78357 AGAAAATAAG
78367 AAATAAAAAATCAAAGAAAAAATA-
1 AAAT-AAAAATC-AAGAAAAAATAT
* * *
78391 AAATAAAAGTCAATACAAAATAT
1 AAATAAAAATCAAGAAAAAATAT
78414 AAATAAAAA
1 AAATAAAAA
78423 CAAAAGAAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 9 0.33
23 14 0.52
24 4 0.15
ACGTcount: A:0.75, C:0.05, G:0.04, T:0.16
Consensus pattern (23 bp):
AAATAAAAATCAAGAAAAAATAT
Found at i:78422 original size:24 final size:23
Alignment explanation
Indices: 78367--78422 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 23
78357 AGAAAATAAG
*
78367 AAATAAAAAATCAAAGAAAAAAT
1 AAATAAAAAATCAAACAAAAAAT
* *
78390 AAA-ATAAAAGTCAATACAAAATAT
1 AAATA-AAAAATCAA-ACAAAAAAT
78414 AAATAAAAA
1 AAATAAAAA
78423 CAAAAGAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
22 1 0.04
23 11 0.41
24 14 0.52
25 1 0.04
ACGTcount: A:0.75, C:0.05, G:0.04, T:0.16
Consensus pattern (23 bp):
AAATAAAAAATCAAACAAAAAAT
Found at i:78778 original size:31 final size:31
Alignment explanation
Indices: 78729--78800 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 31
78719 AAATAAAAAG
78729 AAAAATAAAATAAGAGTATTAAAGCAAAAG-GA
1 AAAAATAAAATAAGAGTATTAAA--AAAAGAGA
78761 AAAAGATAAAAT-A-AGTATTAAAAAAAGAGA
1 AAAA-ATAAAATAAGAGTATTAAAAAAAGAGA
*
78791 AAAATTAAAA
1 AAAAATAAAA
78801 ATAAACAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
29 10 0.27
30 6 0.16
31 9 0.24
32 5 0.14
33 7 0.19
ACGTcount: A:0.69, C:0.01, G:0.12, T:0.17
Consensus pattern (31 bp):
AAAAATAAAATAAGAGTATTAAAAAAAGAGA
Found at i:78802 original size:30 final size:30
Alignment explanation
Indices: 78723--78804 Score: 82
Period size: 31 Copynumber: 2.7 Consensus size: 30
78713 ACTAAAAAAT
78723 AAAA-AGAAAAAT-AAAATAAGAGTATTAAAGC
1 AAAAGAGAAAAATAAAAAT-A-AGTATTAAA-C
*
78754 AAAAG-GAAAAAGATAAAATAAGTATTAAA-
1 AAAAGAGAAAAATA-AAAATAAGTATTAAAC
78783 AAAAGAGAAAAATTAAAAATAA
1 AAAAGAGAAAAA-TAAAAATAA
78805 ACAAAAACAC
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
29 5 0.11
30 13 0.30
31 20 0.45
32 1 0.02
33 5 0.11
ACGTcount: A:0.71, C:0.01, G:0.12, T:0.16
Consensus pattern (30 bp):
AAAAGAGAAAAATAAAAATAAGTATTAAAC
Found at i:78840 original size:9 final size:9
Alignment explanation
Indices: 78820--78904 Score: 55
Period size: 9 Copynumber: 8.9 Consensus size: 9
78810 AACACAAAAC
78820 AAAAAAATA
1 AAAAAAATA
78829 AAAAATAA-A
1 AAAAA-AATA
*
78838 AAAGTAAATGA
1 AAA-AAAAT-A
*
78849 AAAAATGAGTA
1 AAAAA--AATA
78860 AAACAAAATA
1 AAA-AAAATA
78870 AAAAAAATA
1 AAAAAAATA
* *
78879 CAAAAACTA
1 AAAAAAATA
* *
78888 ATAAAAATG
1 AAAAAAATA
78897 AAAAAAAT
1 AAAAAAAT
78905 GACAATAGAA
Statistics
Matches: 58, Mismatches: 11, Indels: 14
0.70 0.13 0.17
Matches are distributed among these distances:
9 36 0.62
10 10 0.17
11 8 0.14
12 4 0.07
ACGTcount: A:0.76, C:0.04, G:0.06, T:0.14
Consensus pattern (9 bp):
AAAAAAATA
Found at i:78884 original size:22 final size:22
Alignment explanation
Indices: 78798--78894 Score: 67
Period size: 22 Copynumber: 4.5 Consensus size: 22
78788 AGAAAAATTA
*
78798 AAAATAAACAAAA-ACACAAAAC
1 AAAATAAAAAAAATACA-AAAAC
* *
78820 AAAAAAATAAAAAATA-AAAAAG
1 AAAATAA-AAAAAATACAAAAAC
* * **
78842 TAAAT-GAAAAAATGAGTAAAAC
1 AAAATAAAAAAAAT-ACAAAAAC
78864 AAAATAAAAAAAATACAAAAAC
1 AAAATAAAAAAAATACAAAAAC
*
78886 -TAATAAAAA
1 AAAATAAAAA
78895 TGAAAAAAAT
Statistics
Matches: 57, Mismatches: 13, Indels: 11
0.70 0.16 0.14
Matches are distributed among these distances:
20 7 0.12
21 9 0.16
22 27 0.47
23 13 0.23
24 1 0.02
ACGTcount: A:0.77, C:0.07, G:0.04, T:0.11
Consensus pattern (22 bp):
AAAATAAAAAAAATACAAAAAC
Found at i:79000 original size:15 final size:16
Alignment explanation
Indices: 78974--79003 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
78964 AATAAGATAT
78974 AAAGATATAAAAAATC
1 AAAGATATAAAAAATC
78990 AAAGATA-AAAAAAT
1 AAAGATATAAAAAAT
79004 TTTAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.73, C:0.03, G:0.07, T:0.17
Consensus pattern (16 bp):
AAAGATATAAAAAATC
Found at i:79142 original size:17 final size:17
Alignment explanation
Indices: 79122--79160 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
79112 AAAAAAATAA
*
79122 AAAAAGATAAAAAGTAC
1 AAAAAGACAAAAAGTAC
*
79139 AAAAATACAAAAAGTAC
1 AAAAAGACAAAAAGTAC
79156 AAAAA
1 AAAAA
79161 AAAAGAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.74, C:0.08, G:0.08, T:0.10
Consensus pattern (17 bp):
AAAAAGACAAAAAGTAC
Found at i:80068 original size:25 final size:25
Alignment explanation
Indices: 80040--80105 Score: 66
Period size: 25 Copynumber: 2.6 Consensus size: 25
80030 ACAAAAGCAC
80040 AAAATAGAAAAAATAA-GAAAGT-AAA
1 AAAATAGAAAAAATAACG--AGTAAAA
*
80065 AAAAT-GAAAAACTAACGAGTCAAAA
1 AAAATAGAAAAAATAACGAGT-AAAA
*
80090 AAAATACAAAAAATAA
1 AAAATAGAAAAAATAA
80106 AAAAATTTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
23 3 0.09
24 9 0.26
25 14 0.41
26 8 0.24
ACGTcount: A:0.73, C:0.06, G:0.09, T:0.12
Consensus pattern (25 bp):
AAAATAGAAAAAATAACGAGTAAAA
Found at i:80417 original size:34 final size:36
Alignment explanation
Indices: 80350--80432 Score: 89
Period size: 35 Copynumber: 2.3 Consensus size: 36
80340 AAAATTTATG
*
80350 AAAATATAAATAAAAAATAAAAAATAAACCAAAATA
1 AAAATATAAATAAAAAATAAAAAATAAACCAAAAGA
* * * *
80386 AAAATA-AAATAAGAAA-AAATATTAAAGCAAAAGAA
1 AAAATATAAATAAAAAATAAAAAATAAACCAAAAG-A
*
80421 AAAAGATAAATA
1 AAAATATAAATA
80433 GAGTACAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
34 13 0.33
35 15 0.38
36 11 0.28
ACGTcount: A:0.76, C:0.04, G:0.05, T:0.16
Consensus pattern (36 bp):
AAAATATAAATAAAAAATAAAAAATAAACCAAAAGA
Found at i:80535 original size:15 final size:16
Alignment explanation
Indices: 80496--80534 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
80486 AAAAATATAA
80496 TAAAAAATATAAAAAG
1 TAAAAAATATAAAAAG
80512 TAAGAAAATA-AAAAAG
1 TAA-AAAATATAAAAAG
80528 ATAAAAA
1 -TAAAAA
80535 TTGAATAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 12 0.57
17 9 0.43
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (16 bp):
TAAAAAATATAAAAAG
Found at i:80856 original size:25 final size:25
Alignment explanation
Indices: 80795--80863 Score: 77
Period size: 25 Copynumber: 2.7 Consensus size: 25
80785 CAAGAAAAAG
**
80795 AATAAAAATAAAAACAAAAAATTTGA
1 AATAAAAA-AAAATTAAAAAATTTGA
*
80821 AATAAAAAAAAATTAAAAAATTTTA
1 AATAAAAAAAAATTAAAAAATTTGA
*
80846 AA-ACAAGAAAAATTAAAA
1 AATA-AAAAAAAATTAAAA
80864 CAAATAAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
24 1 0.03
25 29 0.76
26 8 0.21
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.20
Consensus pattern (25 bp):
AATAAAAAAAAATTAAAAAATTTGA
Found at i:81044 original size:10 final size:10
Alignment explanation
Indices: 81029--81134 Score: 53
Period size: 10 Copynumber: 10.4 Consensus size: 10
81019 ACAAATTTTT
81029 AAAATAAATA
1 AAAATAAATA
81039 AAAATAAA-A
1 AAAATAAATA
81048 AAAA-AAAT-
1 AAAATAAATA
*
81056 -AAATAAAGA
1 AAAATAAATA
81065 AACAATATTAATA
1 AA-AATA--AATA
* *
81078 TAAAAGAAGT-
1 -AAAATAAATA
81088 AAAATAAATA
1 AAAATAAATA
*
81098 AAAAT-ACTAA
1 AAAATAAAT-A
81108 AAAATAACAATTA
1 AAAAT-A-AA-TA
*
81121 AAAATAAACA
1 AAAATAAATA
81131 AAAA
1 AAAA
81135 CAAAAATAAA
Statistics
Matches: 73, Mismatches: 9, Indels: 28
0.66 0.08 0.25
Matches are distributed among these distances:
7 3 0.04
8 6 0.08
9 14 0.19
10 25 0.34
11 8 0.11
12 1 0.01
13 13 0.18
14 3 0.04
ACGTcount: A:0.75, C:0.04, G:0.03, T:0.18
Consensus pattern (10 bp):
AAAATAAATA
Found at i:81059 original size:16 final size:17
Alignment explanation
Indices: 81029--81190 Score: 89
Period size: 17 Copynumber: 9.3 Consensus size: 17
81019 ACAAATTTTT
*
81029 AAAATAAATAA-AAATA
1 AAAATAAAAAATAAATA
81045 AAAA-AAAAAATAAATA
1 AAAATAAAAAATAAATA
* * *
81061 AAGAA-ACAATATTAATA
1 AA-AATAAAAAATAAATA
*
81078 TAAAAGAAGTAAAATAAATA
1 -AAAATAA--AAAATAAATA
**
81098 AAAATACTAAA-AAATA
1 AAAATAAAAAATAAATA
* * *
81114 ACAATTAAAAATAAACA
1 AAAATAAAAAATAAATA
* *
81131 AAAACAAAAATAAAAAGTAA
1 AAAATAAAAA-ATAAA-T-A
*
81151 GAAAATAAAAAATATATA
1 -AAAATAAAAAATAAATA
* *
81169 AAAAGACAAAATAAATA
1 AAAATAAAAAATAAATA
81186 AAAAT
1 AAAAT
81191 TTCAAATATA
Statistics
Matches: 108, Mismatches: 27, Indels: 21
0.69 0.17 0.13
Matches are distributed among these distances:
15 5 0.05
16 23 0.21
17 45 0.42
18 8 0.07
19 6 0.06
20 12 0.11
21 9 0.08
ACGTcount: A:0.75, C:0.04, G:0.04, T:0.17
Consensus pattern (17 bp):
AAAATAAAAAATAAATA
Found at i:81172 original size:17 final size:16
Alignment explanation
Indices: 81029--81190 Score: 70
Period size: 16 Copynumber: 9.9 Consensus size: 16
81019 ACAAATTTTT
81029 AAAATAAATAAAAATAA
1 AAAAT-AATAAAAATAA
*
81046 AAAA-AAAAATAAATAA
1 AAAATAATAA-AAATAA
* *
81062 AGAAACAATATTAATATAA
1 A-AAATAATA--AAAATAA
81081 AAGAAGTAA-AATAAAT-A
1 AA-AA-TAATAA-AAATAA
*
81098 AAAATACTAAAAA-ATA
1 AAAATAATAAAAATA-A
*
81114 ACAAT--TAAAAATAA
1 AAAATAATAAAAATAA
*
81128 ACAAA-AACAAAAATAA
1 A-AAATAATAAAAATAA
* *
81144 AAAGTAA-GAAAATAA
1 AAAATAATAAAAATAA
* *
81159 AAAATATATAAAAAGAC
1 AAAATA-ATAAAAATAA
81176 AAAATAAATAAAAAT
1 AAAAT-AATAAAAAT
81191 TTCAAATATA
Statistics
Matches: 110, Mismatches: 16, Indels: 38
0.67 0.10 0.23
Matches are distributed among these distances:
14 8 0.07
15 26 0.24
16 28 0.25
17 28 0.25
18 8 0.07
19 9 0.08
20 3 0.03
ACGTcount: A:0.75, C:0.04, G:0.04, T:0.17
Consensus pattern (16 bp):
AAAATAATAAAAATAA
Found at i:81263 original size:27 final size:28
Alignment explanation
Indices: 81233--81296 Score: 69
Period size: 27 Copynumber: 2.3 Consensus size: 28
81223 AGAATATACC
* *
81233 AAAAAATATATAATAAAT-ATAGA-AAAA
1 AAAAAATATA-AAAAAATCAAAGATAAAA
*
81260 AAAAGATATAAAAAAATCAAAGATAAAA
1 AAAAAATATAAAAAAATCAAAGATAAAA
81288 AATAAAATA
1 AA-AAAATA
81297 AAAGTCAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
26 6 0.20
27 13 0.43
28 6 0.20
29 5 0.17
ACGTcount: A:0.75, C:0.02, G:0.05, T:0.19
Consensus pattern (28 bp):
AAAAAATATAAAAAAATCAAAGATAAAA
Found at i:81533 original size:7 final size:7
Alignment explanation
Indices: 81523--81565 Score: 59
Period size: 7 Copynumber: 5.9 Consensus size: 7
81513 AAAGATAGAA
81523 AAATAAT
1 AAATAAT
81530 AAATAAT
1 AAATAAT
81537 AAATAAAAT
1 AAAT--AAT
81546 AAATAAT
1 AAATAAT
*
81553 AAGTAAT
1 AAATAAT
81560 AAATAA
1 AAATAA
81566 AATAATCCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
7 25 0.78
9 7 0.22
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (7 bp):
AAATAAT
Found at i:81549 original size:23 final size:23
Alignment explanation
Indices: 81523--81570 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
81513 AAAGATAGAA
81523 AAATAATAAATAATAAATAAAAT
1 AAATAATAAATAATAAATAAAAT
*
81546 AAATAATAAGTAATAAATAAAAT
1 AAATAATAAATAATAAATAAAAT
81569 AA
1 AA
81571 TCCAAATTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (23 bp):
AAATAATAAATAATAAATAAAAT
Found at i:86863 original size:161 final size:162
Alignment explanation
Indices: 86592--86898 Score: 499
Period size: 161 Copynumber: 1.9 Consensus size: 162
86582 TGTTAAAACC
* *
86592 TTCAACCATTAAGGAACTAGTAGAATGAGAGAGAAAAAAGTTCTGTGGCGGTAGACCAGAAAGTA
1 TTCAACCATTAAGGAACTAGTAGAAT-AGAGAGAAAAAAGATCTGTGGCGGTAGACCAGAAACTA
* * *
86657 TCAATTCAAGGTGGTTGATTCTTACAGGATAATGAGAATGAAAGGATCATATTAGACTGGTTGCT
65 TCAATTCAAGGTGGTTGATTCTTACAGGATAATGAGAACGAAAGGATCAAATCAGACTGGTTGCT
86722 TCCGATTATATTACTTGTCATTCTATAAACACT
130 TCCGATTATATTACTTGTCATTCTATAAACACT
*
86755 TTCAACCATTAAGGAACTAGTAGAAT-GAGAGAAAAAGGATCTGTGGCGGTAGACCAGAAACTAT
1 TTCAACCATTAAGGAACTAGTAGAATAGAGAGAAAAAAGATCTGTGGCGGTAGACCAGAAACTAT
* * * *
86819 CAATTCGAGGTGGTTGCTTGTTACAGTATAATGAGAACGAAAGGATCAAATCAGACTGGTTGCTT
66 CAATTCAAGGTGGTTGATTCTTACAGGATAATGAGAACGAAAGGATCAAATCAGACTGGTTGCTT
*
86884 CTGATTATATTACTT
131 CCGATTATATTACTT
86899 ATGTTTTATT
Statistics
Matches: 133, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
161 107 0.80
163 26 0.20
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (162 bp):
TTCAACCATTAAGGAACTAGTAGAATAGAGAGAAAAAAGATCTGTGGCGGTAGACCAGAAACTAT
CAATTCAAGGTGGTTGATTCTTACAGGATAATGAGAACGAAAGGATCAAATCAGACTGGTTGCTT
CCGATTATATTACTTGTCATTCTATAAACACT
Found at i:92830 original size:9 final size:8
Alignment explanation
Indices: 92813--92969 Score: 57
Period size: 8 Copynumber: 17.4 Consensus size: 8
92803 CATTTCTCAC
92813 TTTTTTTA
1 TTTTTTTA
92821 TTTTTATTA
1 TTTTT-TTA
92830 TATTTTTGTA
1 T-TTTTT-TA
*
92840 TATTTTTAA
1 T-TTTTTTA
*
92849 TTTTTTTC
1 TTTTTTTA
*
92857 TTTTCTTA
1 TTTTTTTA
92865 TTGGTATTGATT-
1 TT--T-TT--TTA
*
92877 TTTTTCTTT
1 TTTTT-TTA
92886 TTTTTTGTA
1 TTTTTT-TA
*
92895 CTTTATTTA
1 -TTTTTTTA
*
92904 TCTTTTTTC
1 T-TTTTTTA
92913 TTTTGCTTTAA
1 TTTT--TTT-A
*
92924 TATTTTTTC
1 T-TTTTTTA
92933 TTATTTTTA
1 TT-TTTTTA
92942 TTTTTTTA
1 TTTTTTTA
92950 TTTATTTT-
1 TTT-TTTTA
92958 TATTTTTTA
1 T-TTTTTTA
92967 TTT
1 TTT
92970 ATATTTTCAT
Statistics
Matches: 115, Mismatches: 14, Indels: 40
0.68 0.08 0.24
Matches are distributed among these distances:
8 42 0.37
9 38 0.33
10 26 0.23
11 2 0.02
12 5 0.04
13 2 0.02
ACGTcount: A:0.15, C:0.05, G:0.04, T:0.76
Consensus pattern (8 bp):
TTTTTTTA
Found at i:92944 original size:6 final size:6
Alignment explanation
Indices: 92933--92976 Score: 54
Period size: 6 Copynumber: 7.2 Consensus size: 6
92923 ATATTTTTTC
*
92933 TTATTT TTATTT TT-TTAT TTATTT TTATTTT TTATTT ATATTT T
1 TTATTT TTATTT TTATT-T TTATTT TTA-TTT TTATTT TTATTT T
92977 CATAAATTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
5 2 0.06
6 23 0.70
7 8 0.24
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
TTATTT
Found at i:92948 original size:17 final size:18
Alignment explanation
Indices: 92926--92965 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
92916 TGCTTTAATA
92926 TTTTTT-CTTATTTTTAT
1 TTTTTTACTTATTTTTAT
*
92943 TTTTTTATTTATTTTTAT
1 TTTTTTACTTATTTTTAT
92961 TTTTT
1 TTTTT
92966 ATTTATATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.85
Consensus pattern (18 bp):
TTTTTTACTTATTTTTAT
Found at i:92955 original size:12 final size:13
Alignment explanation
Indices: 92919--92974 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
92909 TTTCTTTTGC
*
92919 TTTAATATTT-TT
1 TTTATTATTTATT
92931 TCTTATT-TTTATT
1 T-TTATTATTTATT
92944 TTT-TTATTTATT
1 TTTATTATTTATT
*
92956 TTTATTTTTTATT
1 TTTATTATTTATT
*
92969 TATATT
1 TTTATT
92975 TTCATAAATT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
11 2 0.05
12 15 0.41
13 20 0.54
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTATTATTTATT
Found at i:92966 original size:13 final size:13
Alignment explanation
Indices: 92936--92976 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
92926 TTTTTTCTTA
92936 TTTTTATTTTT-T
1 TTTTTATTTTTAT
*
92948 TATTTATTTTTAT
1 TTTTTATTTTTAT
*
92961 TTTTTATTTATAT
1 TTTTTATTTTTAT
92974 TTT
1 TTT
92977 CATAAATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
12 10 0.40
13 15 0.60
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTTATTTTTAT
Found at i:92976 original size:18 final size:17
Alignment explanation
Indices: 92924--92976 Score: 72
Period size: 17 Copynumber: 3.1 Consensus size: 17
92914 TTTGCTTTAA
*
92924 TATTTTTT-CTTATTTT
1 TATTTTTTATTTATTTT
92940 TATTTTTTTATTTATTTT
1 TA-TTTTTTATTTATTTT
92958 TATTTTTTATTTATATTT
1 TATTTTTTATTTAT-TTT
92976 T
1 T
92977 CATAAATTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
16 2 0.06
17 18 0.55
18 13 0.39
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (17 bp):
TATTTTTTATTTATTTT
Found at i:93027 original size:21 final size:21
Alignment explanation
Indices: 93003--93043 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
92993 GTTTTGATTT
*
93003 TTTTTTTTTCATCTTTTTATC
1 TTTTCTTTTCATCTTTTTATC
* *
93024 TTTTCTTTTCTTTTTTTTAT
1 TTTTCTTTTCATCTTTTTAT
93044 TTTATCATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.07, C:0.12, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTTCTTTTCATCTTTTTATC
Found at i:93114 original size:16 final size:17
Alignment explanation
Indices: 93090--93124 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
93080 TAATTTTTTA
*
93090 TTAACTTTTT-TTCCTT
1 TTAAATTTTTCTTCCTT
93106 TTAAATTTTTCTTCCTT
1 TTAAATTTTTCTTCCTT
93123 TT
1 TT
93125 TTTTACTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.14, C:0.17, G:0.00, T:0.69
Consensus pattern (17 bp):
TTAAATTTTTCTTCCTT
Found at i:93217 original size:14 final size:15
Alignment explanation
Indices: 93200--93261 Score: 51
Period size: 14 Copynumber: 4.2 Consensus size: 15
93190 TTCTATATAT
93200 TTTTTTTC-TTTTTG
1 TTTTTTTCATTTTTG
*
93214 TTTTATTTCATATTTG
1 TTTT-TTTCATTTTTG
*
93230 -TCTTTTCATTTTT-
1 TTTTTTTCATTTTTG
93243 TTCTTTTT-ATTTCTTG
1 TT-TTTTTCATTT-TTG
93259 TTT
1 TTT
93262 CCATTTTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 11
0.72 0.08 0.21
Matches are distributed among these distances:
14 18 0.47
15 13 0.34
16 7 0.18
ACGTcount: A:0.08, C:0.10, G:0.05, T:0.77
Consensus pattern (15 bp):
TTTTTTTCATTTTTG
Found at i:93741 original size:19 final size:18
Alignment explanation
Indices: 93717--93752 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
93707 TTTTTTTTGT
93717 TTATTTCTAATTGCTTTTC
1 TTATTT-TAATTGCTTTTC
*
93736 TTATTTTTATTGCTTTT
1 TTATTTTAATTGCTTTT
93753 TTCGTTAGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.14, C:0.11, G:0.06, T:0.69
Consensus pattern (18 bp):
TTATTTTAATTGCTTTTC
Found at i:93830 original size:8 final size:8
Alignment explanation
Indices: 93819--93879 Score: 65
Period size: 8 Copynumber: 7.6 Consensus size: 8
93809 AAAGTTTTGA
93819 ATTTTTTT
1 ATTTTTTT
93827 A-TTTTTT
1 ATTTTTTT
*
93834 ATTTTTTGA
1 ATTTTTT-T
93843 ATCTTTTTT
1 AT-TTTTTT
93852 -TCTTTTTT
1 AT-TTTTTT
93860 -TTTTTTT
1 ATTTTTTT
93867 ATTTTTTT
1 ATTTTTTT
93875 ATTTT
1 ATTTT
93880 CTCATTTCTT
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
7 13 0.28
8 27 0.57
9 2 0.04
10 5 0.11
ACGTcount: A:0.11, C:0.03, G:0.02, T:0.84
Consensus pattern (8 bp):
ATTTTTTT
Found at i:93838 original size:6 final size:7
Alignment explanation
Indices: 93821--93879 Score: 52
Period size: 7 Copynumber: 8.6 Consensus size: 7
93811 AGTTTTGAAT
93821 TTTTTTA
1 TTTTTTA
93828 TTTTTTA
1 TTTTTTA
93835 TTTTTTGA
1 TTTTTT-A
* *
93843 ATCTTT-
1 TTTTTTA
*
93849 TTTTCT-
1 TTTTTTA
93855 TTTTTT-
1 TTTTTTA
93861 TTTTTTA
1 TTTTTTA
93868 TTTTTTTA
1 -TTTTTTA
93876 TTTT
1 TTTT
93880 CTCATTTCTT
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
6 14 0.33
7 17 0.40
8 12 0.28
ACGTcount: A:0.10, C:0.03, G:0.02, T:0.85
Consensus pattern (7 bp):
TTTTTTA
Found at i:94130 original size:22 final size:21
Alignment explanation
Indices: 94107--94179 Score: 62
Period size: 23 Copynumber: 3.4 Consensus size: 21
94097 TTTTTTTGTC
94107 TTTGATTTTTTATACTATTTT
1 TTTGATTTTTTATACTATTTT
*
94128 CTTATTATTTTTT-T-C-ATTTT
1 -TT-TGATTTTTTATACTATTTT
*
94148 TTTGTATTTTTCATACTAATTTT
1 TTTG-ATTTTTTATACT-ATTTT
*
94171 TTTCATTTT
1 TTTGATTTT
94180 GTCATTCATT
Statistics
Matches: 41, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
18 1 0.02
19 8 0.20
20 6 0.15
21 2 0.05
22 8 0.20
23 16 0.39
ACGTcount: A:0.18, C:0.08, G:0.03, T:0.71
Consensus pattern (21 bp):
TTTGATTTTTTATACTATTTT
Done.