genome.fa.s665.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168490.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_88, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101443

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2648--2708	26	2.4	25	81	10	70	44	1	3	50	1.28
3492--3526	17	2.1	17	89	5	54	31	22	22	22	1.98
7465--7698	113	2.1	113	94	1	407	35	11	13	40	1.80
7697--7843	59	2.5	57	84	9	163	40	10	15	32	1.82
7721--7843	59	2.1	59	89	6	187	43	11	13	31	1.80
8052--8999	62	15.1	62	68	11	292	39	9	14	36	1.78
8399--8521	64	1.9	64	81	6	151	40	9	13	35	1.78
8322--8785	187	2.5	186	78	6	483	40	8	14	36	1.76
7849--9176	62	21.3	61	66	14	270	40	9	14	36	1.77
8274--9215	62	15.1	62	70	12	311	39	9	14	36	1.79
8979--9353	136	2.9	128	81	5	396	40	10	12	36	1.78
15577--16642	161	6.7	161	80	4	965	32	10	14	42	1.80
15589--16642	321	3.3	313	79	6	978	32	10	14	42	1.80
18696--18761	33	2.0	33	85	11	91	21	4	3	71	1.18
19258--19357	30	3.3	30	80	2	94	45	31	4	20	1.69
19417--19463	7	6.4	7	77	18	51	57	27	0	14	1.38
20048--20080	13	2.4	14	85	10	50	69	3	0	27	1.03
25916--25958	13	3.4	12	81	12	50	83	0	9	6	0.80
26706--26868	83	1.9	85	82	4	206	33	9	14	42	1.78
26860--26907	22	2.2	22	85	7	62	33	18	16	31	1.94
26790--27140	127	2.8	127	85	2	445	34	15	14	35	1.88
27031--27255	105	2.1	106	89	0	344	37	15	13	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26893--27673	233	3.4	230	81	5	823	34	16	14	35	1.88
27150--27382	127	1.8	127	84	3	317	34	16	13	35	1.87
27480--27682	106	1.9	105	90	1	325	34	12	13	38	1.83
27831--28061	105	2.2	107	81	7	276	35	16	12	35	1.87
28037--28240	88	2.3	86	81	9	225	20	18	18	43	1.89
28215--28292	22	3.5	22	83	10	88	28	20	16	34	1.94
28215--28306	22	4.1	22	74	10	80	27	20	17	34	1.95
28367--28426	23	2.7	23	79	10	61	28	18	18	35	1.94
28409--28464	23	2.5	23	82	11	80	32	19	14	33	1.92
28530--28604	22	3.3	23	78	12	84	30	20	13	36	1.91
28530--28618	22	4.0	22	81	7	81	29	19	14	37	1.91
28677--28803	22	5.6	22	73	15	98	29	20	18	31	1.97
28680--28803	46	2.7	44	82	3	149	29	20	18	31	1.97
28124--28739	311	2.0	310	80	7	705	24	19	17	38	1.92
28125--28774	155	4.2	152	77	7	567	25	19	17	38	1.93
30258--30306	19	2.7	19	73	17	50	20	0	6	73	1.04
30235--30303	34	2.1	33	83	2	84	23	0	8	68	1.17
30775--30911	30	4.6	30	70	7	93	45	32	2	19	1.65
30963--31003	7	5.6	7	85	8	55	56	26	0	17	1.41
30963--31004	15	2.8	15	80	20	52	54	28	0	16	1.42
32430--32494	34	1.9	34	87	9	98	36	15	12	35	1.85
33311--33375	34	1.9	34	84	6	87	41	6	6	46	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37880--37922	14	3.2	13	83	9	59	55	0	9	34	1.32
37940--37984	20	2.2	20	88	0	63	40	0	0	60	0.97
42257--42341	34	2.5	33	81	7	91	49	3	3	43	1.37
43082--43261	86	2.1	86	100	0	360	35	11	12	41	1.79
43710--43773	27	2.4	26	81	5	65	45	0	1	53	1.10
44738--44777	20	2.1	19	85	4	53	47	0	0	52	1.00
44743--44786	20	2.2	20	83	0	52	52	0	0	47	1.00
47995--48074	39	2.1	39	85	4	108	41	16	10	32	1.81
54911--55145	118	2.0	117	92	1	391	54	5	12	27	1.61
55248--55294	20	2.5	19	79	6	51	42	4	0	53	1.20
59990--60019	11	2.7	11	94	0	51	93	0	3	3	0.42
62331--62451	41	3.0	41	79	2	127	32	16	14	36	1.90
62705--62991	110	2.6	109	81	4	326	21	20	17	39	1.92
62908--63221	88	3.6	88	82	2	364	21	17	18	42	1.89
62908--63227	175	1.8	176	83	4	423	20	16	19	43	1.88
63399--63464	3	23.0	3	78	6	66	60	0	0	39	0.97
64932--65050	16	7.4	16	77	9	116	47	31	0	20	1.56
65216--65256	21	2.0	21	90	9	66	43	26	4	24	1.74
65681--65725	24	1.9	23	82	13	56	62	2	0	35	1.08
66807--66936	65	2.0	64	90	1	206	40	12	26	20	1.88
70685--70713	14	2.1	14	100	0	58	0	41	0	58	0.98
74274--74346	36	1.9	37	86	10	103	38	4	8	49	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74365--74401	18	2.1	18	94	0	65	54	0	0	45	1.00
75730--75785	11	5.4	10	80	14	60	21	1	0	76	0.87
75731--75852	30	3.8	33	73	17	105	27	2	1	68	1.11
75742--75845	31	3.4	30	81	10	129	27	1	1	68	1.11
76168--76213	18	2.6	17	86	3	56	73	2	0	23	0.94
80928--80952	11	2.3	11	100	0	50	0	16	68	16	1.22
81057--81126	30	2.3	31	80	7	81	42	0	1	55	1.08
82324--82386	31	2.1	30	81	3	72	47	0	0	52	1.00
85192--85263	13	5.8	13	68	28	50	69	6	6	16	1.33
85301--85352	6	9.0	6	81	8	54	78	1	3	15	0.98
91418--91488	33	2.2	33	92	0	115	19	1	32	46	1.59
94352--94377	2	13.0	2	100	0	52	50	0	50	0	1.00

Tables:   1

The End!