Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168491.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_89, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101268
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Warning! 1000 characters in sequence are not A, C, G, or T
File 1 of 3
Found at i:392 original size:31 final size:31
Alignment explanation
Indices: 354--416 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
344 CCAAATAAGG
*
354 ATTAATAACTATTTGAACTAGTTTGATAAAT
1 ATTAATAACTATTTAAACTAGTTTGATAAAT
385 ATTAATAACTATTTAAACTAGTTTGATAAAT
1 ATTAATAACTATTTAAACTAGTTTGATAAAT
416 A
1 A
417 GATTTATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.44, C:0.06, G:0.08, T:0.41
Consensus pattern (31 bp):
ATTAATAACTATTTAAACTAGTTTGATAAAT
Found at i:1824 original size:15 final size:15
Alignment explanation
Indices: 1806--1835 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
1796 AGATTTATTT
1806 TTTATTAATTTTTTG
1 TTTATTAATTTTTTG
1821 TTTATTAATTTTTTG
1 TTTATTAATTTTTTG
1836 ATGTAATACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.07, T:0.73
Consensus pattern (15 bp):
TTTATTAATTTTTTG
Found at i:2459 original size:165 final size:164
Alignment explanation
Indices: 2262--2581 Score: 414
Period size: 164 Copynumber: 1.9 Consensus size: 164
2252 TAGATAATAG
* * * * *
2262 TTCAAATAGTCATAATAATTTGAACTTGTTCGATAAATAGATTTATTTTTTAAATCTTTTTACTT
1 TTCAAATAGTCAGAATAATTTGAACTTGTTCGATAAACAGATTCATTTTTTAAATC-TCTTAATT
* * * *
2327 TTTAATTGTCTT-AATATTAATTAATTT-ATATTATTTTATTTGAAATAAGCTTGTATGAATAGA
65 ATTAATT-T-TTAAATATTAA-TAATTTGATATTATTTTATTTCAAATAAACTTATATGAATAGA
*
2390 AAAAATTATTTTATGA-CAAACAAAAGGTTATAGCAAT
127 AAAAATTATTTTATAACCAAACAAAAGGTTATAGCAAT
*
2427 TTCAAATAGTCAGAATTA-TTGAAACTTGTTCGATAAACAGATTCATTTTTTAAATCTCTTAATT
1 TTCAAATAGTCAGAATAATTTG-AACTTGTTCGATAAACAGATTCATTTTTTAAATCTCTTAATT
* *
2491 ATTAATTTTTAGAATATTAATAATTTGGTATTATTTTATTTCAAATAAACTTATATGAATTGAAA
65 ATTAATTTTTA-AATATTAATAATTTGATATTATTTTATTTCAAATAAACTTATATGAATAGAAA
* * *
2556 CAATTCTTTTCTAACCAAACAAAAGG
129 AAATTATTTTATAACCAAACAAAAGG
2582 ACATACTGAT
Statistics
Matches: 134, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
162 2 0.01
163 7 0.05
164 66 0.49
165 59 0.44
ACGTcount: A:0.39, C:0.08, G:0.09, T:0.44
Consensus pattern (164 bp):
TTCAAATAGTCAGAATAATTTGAACTTGTTCGATAAACAGATTCATTTTTTAAATCTCTTAATTA
TTAATTTTTAAATATTAATAATTTGATATTATTTTATTTCAAATAAACTTATATGAATAGAAAAA
ATTATTTTATAACCAAACAAAAGGTTATAGCAAT
Found at i:2596 original size:346 final size:344
Alignment explanation
Indices: 2105--3117 Score: 813
Period size: 346 Copynumber: 2.9 Consensus size: 344
2095 ATCTAATTTG
* *
2105 AACTAGTTCGATAAACAAATTTAGTTTTAAATCTCTTATTAATTTTTTAAAATATTAATTAAAAT
1 AACTAGTTCGATAAACAAATTCAGTTTTAAATCTCTTATTAAATTTTTAAAATATTAATTAAAAT
* ** * * *
2170 AATATTATTTTATTTCTGAATAATTTTGTATGAATAGAAACAATTATTTTATGACAAAACAAAAT
66 AATATTATTTTATTTCTAAATAAACTTATATGAATAGAAACAATTATTTTATAACAAAACAAAAG
* *
2235 GTCATAATGATTTGAAATAGATAA-TAGTTCAAATAGTCATAATAATTTGAACTT-GTTCGATAA
131 GACATAATGATTTGAAATAGATAATTA-TTCAAATAGTCATAATAATTTG-ACTTAGTTCAATAA
* * * * *
2298 ATAGATTTATTTTTTAAATCTTTTTACTTTTTAATTGTCT-TAATATTAATTAATTTA-TATT-A
194 ACAGATTTA--TTTTAAAT-TTTTTACTTATTAATTGT-TGAAATATTAATAAAATTAGTATTAA
* ** * * *
2360 TTTTATTTGAAATAAGCTTGTATGAATAGAAAAAATTATTTTATGACA-AACAAAAGGTTATAGC
255 TTTTAATCCAAATAAGCTTATATGAATAGAAAAAATTATTTTATAACAGAACAAAAAGTTATAGC
2424 AATTTCAAATAGTCAGAATTATTGA
320 AATTTCAAATAGTCAGAATTATTGA
* * * *
2449 AACTTGTTCGATAAACAGATTCATTTTTTAAATCTCTTAATTATTAATTTTTAGAATATTAA-TA
1 AACTAGTTCGATAAACAAATTCA-GTTTTAAATCTCTT-ATTA--AATTTTTAAAATATTAATTA
** ** * * * *
2513 ATTTGGTATTATTTTATTTC-AAATAAACTTATATGAATTGAAACAATTCTTTTCTAACCAAACA
62 AAATAATATTATTTTATTTCTAAATAAACTTATATGAATAGAAACAATTATTTTATAACAAAACA
* * ** * *
2577 AAAGGACATACTGATTTGAAATAGATAATTATTCGAATAGTCATGGTTATTTGATTTAGTTCAAT
127 AAAGGACATAATGATTTGAAATAGATAATTATTCAAATAGTCATAATAATTTGACTTAGTTCAAT
*
2642 AAACATATTTATTTTAAATTTTTTACTTATTAATTGTTGAAATATTAATAAAATTAGTATTAATT
192 AAACAGATTTATTTTAAATTTTTTACTTATTAATTGTTGAAATATTAATAAAATTAGTATTAATT
* * * *
2707 TTAATCCAAATAAGCTTATATGAATTGAAACAATTGTTTTATAATAGAACAAAAAGTTATAATGA
257 TTAATCCAAATAAGCTTATATGAATAGAAAAAATTATTTTATAACAGAACAAAAAG-T-T-AT-A
**
2772 TTTGACATAAATAATTTGCCAAATAGTCATTATTATTTG-
318 ---G-C------AATTT--CAAATAGTCAGAATTA-TTGA
* * * * * * * * *
2811 AACTGGTTTGATAAATAAATTTATTTTTAAATCTATTATT-AATTTTTGAAATA-TAA-TAGATT
1 AACTAGTTCGATAAACAAATTCAGTTTTAAATCTCTTATTAAATTTTTAAAATATTAATTAAAAT
* * * * * * * * *
2873 AGTATTACTTCTA-TTCCAAACAAACTTATATGAACAAAAACATTTGTTTTATGACAAAAACAAA
66 AATATTA-TTTTATTTCTAAATAAACTTATATGAATAGAAACAATTATTTTATAAC-AAAACAAA
* ** * * * * * *
2937 AGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTTATAATTATTTGAATTGGTT-AGGTA
129 AGGACATAATGATTTGAAATAGATAATTATTCAAATAGTCATAATAATTTGACTTAGTTCA-ATA
* * ** * *
3001 AACAAAATTATTTTTTCAAATTGCTTACTTATTAATCT-TTGAAATATTAAT-AAATTTGT-TTT
193 AAC-AGATT-TATTTT-AAATTTTTTACTTATTAAT-TGTTGAAATATTAATAAAATTAGTATTA
* * * * * *
3063 A-TTTATTCCAAATAAGC-TAGTATGAATTGCAAAAATTGTTTTATGACAAAACAAA
254 ATTTTAATCCAAATAAGCTTA-TATGAATAGAAAAAATTATTTTATAACAGAACAAA
3118 TGATCATAAT
Statistics
Matches: 542, Mismatches: 91, Indels: 58
0.78 0.13 0.08
Matches are distributed among these distances:
342 1 0.00
343 31 0.06
344 32 0.06
345 56 0.10
346 105 0.19
347 21 0.04
348 16 0.03
349 2 0.00
350 1 0.00
353 1 0.00
354 1 0.00
356 16 0.03
357 48 0.09
358 105 0.19
359 7 0.01
360 20 0.04
361 43 0.08
362 33 0.06
363 3 0.01
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (344 bp):
AACTAGTTCGATAAACAAATTCAGTTTTAAATCTCTTATTAAATTTTTAAAATATTAATTAAAAT
AATATTATTTTATTTCTAAATAAACTTATATGAATAGAAACAATTATTTTATAACAAAACAAAAG
GACATAATGATTTGAAATAGATAATTATTCAAATAGTCATAATAATTTGACTTAGTTCAATAAAC
AGATTTATTTTAAATTTTTTACTTATTAATTGTTGAAATATTAATAAAATTAGTATTAATTTTAA
TCCAAATAAGCTTATATGAATAGAAAAAATTATTTTATAACAGAACAAAAAGTTATAGCAATTTC
AAATAGTCAGAATTATTGA
Found at i:2735 original size:181 final size:177
Alignment explanation
Indices: 2426--6249 Score: 1240
Period size: 181 Copynumber: 21.3 Consensus size: 177
2416 GTTATAGCAA
* * * * * *
2426 TTTCAAATAGTCAGAATTA-TTGAAACTT-GTTCGATAAACAGATTCATTTTTTAAATCTCTTAA
1 TTTCAAATAGTCATAATTATTTG-AA-TTGGTT-AATAAACAAATT--TATTTTAAATTTCTTAC
* * * *
2489 TTATTAATTTTTAGAATATTAATAATTTGGTATT-ATTTTATTTCAAATAAACTTATATGAATTG
61 TTATTAATTTTGA-AATATTAATAAATTAGTATTAATTTTATTCCAAATAAACTTATATGAATTG
* * * *
2553 AAACAATTCTTTTCTAACCAAACAAAAGGACATACTGATTTGAAATAGATAAT
125 AAACAATTGTTTTATAACAAAACAAAAGGACATAATGATTTGAAATAGATAAT
* ** * * * *
2606 TATTCGAATAGTCATGGTTATTTGATTTAGTTCAATAAACATATTTATTTTAAATTTTTTACTTA
1 T-TTCAAATAGTCATAATTATTTGAATTGGTT-AATAAACAAATTTATTTTAAATTTCTTACTTA
* *
2671 TTAATTGTTGAAATATTAATAAAATTAGTATTAATTTTAATCCAAATAAGCTTATATGAATTGAA
64 TTAATT-TTGAAATATTAAT-AAATTAGTATTAATTTTATTCCAAATAAACTTATATGAATTGAA
* * * ** * *
2736 ACAATTGTTTTATAATAGAACAAAAAGTTATAATGATTTGACATAAATAAT
127 ACAATTGTTTTATAACAAAACAAAAGGACATAATGATTTGAAATAGATAAT
* * * * *
2787 TTGCCAAATAGTCATTATTATTTGAACTGGTTTGATAAATAAATTTATTTTTAAA--TC-TA-TT
1 TT-TCAAATAGTCATAATTATTTGAATTGG-TTAATAAACAAATTTA-TTTTAAATTTCTTACTT
* * * * ***
2848 ATTAATTTTTGAAATA-TAATAGATTAGTATTACTTCTATTCCAAACAAACTTATATGAACAAAA
63 ATTAA-TTTTGAAATATTAATAAATTAGTATTAATTTTATTCCAAATAAACTTATATGAATTGAA
* * * **
2912 ACATTTGTTTTATGACAAAAACAAAAGGTCATAACAATTTGAAATAGATAAT
127 ACAATTGTTTTATAAC-AAAACAAAAGGACATAATGATTTGAAATAGATAAT
* * * *
2964 TGTTCAAATAGTTATAATTATTTGAATTGGTTAGGTAAACAAAATTATTTTTTCAAATTGCTTAC
1 T-TTCAAATAGTCATAATTATTTGAATTGGTTA-ATAAAC-AAATT-TATTTT-AAATTTCTTAC
* * *
3029 TTATTAATCTTTGAAATATTAATAAATTTGT-TTTA-TTTATTCCAAATAAGC-TAGTATGAATT
61 TTATTAAT-TTTGAAATATTAATAAATTAGTATTAATTTTATTCCAAATAAACTTA-TATGAATT
* *
3091 GCAAA-AATTGTTTTATGACAAAAC-AAATGATCATAAT-ATTTGAAATAGATAATT
124 G-AAACAATTGTTTTATAACAAAACAAAAGGA-CATAATGATTTGAAATAGATAA-T
* * * * ** *
3145 GTTTCATATAGTCTTAAATATTTGAACTGGTTCAGCAAACAAATTTAGTTTT-AATTCTCTTAGT
1 -TTTCAAATAGTCATAATTATTTGAATTGGTT-AATAAACAAATTTA-TTTTAAATT-TCTTACT
* * * * * ** *
3209 TATTAATTTTTGAAATATT-ATTAGTTAGAATT-ATTTTATTCCAAATAAGCTTGTACAAACAT-
62 TATTAA-TTTTGAAATATTAATAAATTAGTATTAATTTTATTCCAAATAAACTTATATGAA-TTG
* * ** ** * *
3271 AAATAATTGTTTTATAACAGAACAAAAGGTTATAACAATTTGAAGTATACAATTGTTTTAT
125 AAACAATTGTTTTATAACAAAACAAAAGGACATAATGATTTGAA--AT---A--G-ATAAT
* * * * * ** * *
3332 TGTTCAAATAGTCCTAACTATTTGAGCTAGTTTGGTAAATAGATTTATTTTTTAAA--TC-T-CT
1 T-TTCAAATAGTCATAATTATTTGA-ATTGGTTAATAAACAAATTTA--TTTTAAATTTCTTACT
* * ** *
3393 TATTAATTTTTGAAAGATT-ATAAGTTAGTATT-ATTTTATT-TGAATAAGCTTGA-ATG-ATTA
62 TATTAA-TTTTGAAATATTAATAAATTAGTATTAATTTTATTCCAAATAAACTT-ATATGAATT-
* ** * * * * *
3453 AAAACGTTTGTTATATGACTACACAAAATGTA-ATAATGATTTGAAATTA-ATAAT
124 GAAACAATTGTTTTATAACAAAACAAAA-GGACATAATGATTTGAAA-TAGATAAT
* ** * * * * * * *
3507 TATTAAAACGGCCAGAATTATTTGAAATGTTTCAGTAAACAAATTTATTTTTTAA-GTC--ACTT
1 T-TTCAAATAGTCATAATTATTTGAATTGGTT-AATAAACAAATTTA-TTTTAAATTTCTTACTT
* * *** * *
3569 ATTAATTTTTGGAATATTAAT-AATTTGTATT-ATTTTATTTTGAATAAACTTGTATGAACTGAA
63 ATTAA-TTTTGAAATATTAATAAATTAGTATTAATTTTATTCCAAATAAACTTATATGAATTGAA
** * * * *
3632 ATGATTATTTTATGA-AAAACAAAAGGTCATAATGATTTAAAATAGATAAT
127 ACAATTGTTTTATAACAAAACAAAAGGACATAATGATTTGAAATAGATAAT
** * * * *** * *
3682 TATTCATGTAGTCTTTAACTGTTTGAACTACTTTAATAAACAGATTTATTTTTTAAATCTCTTTA
1 T-TTCAAATAGTC-ATAATTATTTGAA-TTGGTTAATAAACAAATTTA--TTTTAAATTTC-TTA
* * * ** * * *
3747 -TTATTAATTTTCAAAATATTATTAAATTAGCATT-ATTTTATTCTTAATAAGCTTGTATGAACT
60 CTTATTAATTTT-GAAATATTAATAAATTAGTATTAATTTTATTCCAAATAAACTTATATGAATT
* * ** ** *
3810 GAAACAATTATTTTATAATAGGACAAAAGGTTATAATGATTTGAAATAGGTAAT
124 GAAACAATTGTTTTATAACAAAACAAAAGGACATAATGATTTGAAATAGATAAT
* * * * * * *** * * *
3864 TCTTCAAATAG----GA--ACTCG-TTTGGTAAATAGAGTTA-TT-TTTTAAATCTCCTATTTAT
1 T-TTCAAATAGTCATAATTATTTGAATTGGTTAATAAACAAATTTATTTTAAATTTCTTACTTAT
* * ** * *
3920 TAATTTTGAAATAGTAATAAATTAGTATT-ATTTTATTCTAAATAGGCTTGTGTG-A-TGAAA-A
65 TAATTTTGAAATATTAATAAATTAGTATTAATTTTATTCCAAATAAACTTATATGAATTGAAACA
* ** * *
3981 TATTGTTTTATGACAAAACAAAAGTTCATAATGATTTGAATTATATAAT
130 -ATTGTTTTATAACAAAACAAAAGGACATAATGATTTGAAATAGATAAT
* * * * *** * * *
4030 TGTTGAAATGGCCACAATTATTTGAACTAATTTAGTAAACAGATTCACTTTTTAAA--TC--ACT
1 T-TTCAAATAGTCATAATTATTTGAA-TTGGTTAATAAACAAATTTA--TTTTAAATTTCTTACT
** * * * * * * * *
4091 CGTTAATTTTTGGATTATTAAAAAATTATTATT-ATTTTATTTCAAATAAGCTTGTATGAACTGA
62 TATTAA-TTTTGAAATATTAATAAATTAGTATTAATTTTATTCCAAATAAACTTATATGAATTGA
* * * ** * * *
4155 AACAATTG-TTTATGACAAAATAAAAGGTCATAATCTTTTTAAATATACAAT
126 AACAATTGTTTTATAACAAAACAAAAGGACATAATGATTTGAAATAGATAAT
* * * *
4206 TATTCAAATAGTCATAACTATTTGAATTTGTTCAA-AAAAATAGATTTATTTTTTTAAATCTCTT
1 T-TTCAAATAGTCATAATTATTTGAATTGGTT-AATAAACA-A-ATTTA---TTTTAAATTTCTT
* * * ** **** * *
4270 GCTTATTAATTTTTAAAATATTATTAAATTAGTATTTTTTTTTATTTTGCATAAGCTTTTATGAA
59 ACTTATTAA-TTTTGAAATATTAATAAATTAGTA-TTAATTTTATTCCAAATAAACTTATATGAA
* * ** *
4335 CT-ACAACAATAT-TTTTATAACAAAAC-AAAGGTCATAACAATTTTAAATA-AGTAAT
122 TTGA-AACAAT-TGTTTTATAACAAAACAAAAGGACATAATGATTTGAAATAGA-TAAT
** * * ** * * * *
4390 TATTCAAATAGTCATAAGAATTTGAGTTTGTTTGGTAAATAGATTTATTTTTTTCAAATATCTTG
1 T-TTCAAATAGTCATAATTATTTGA-ATTGGTTAATAAACAAATTTA---TTTT-AAATTTCTTA
* ** * * * * * *
4455 CTTATTGATTTTTTTAATATTAATATATTAGGACT--TTTTATTTCTAATAAGCTTATATG-ATA
60 CTTATT-AATTTTGAAATATTAATAAATTAGTATTAATTTTATTCCAAATAAACTTATATGAAT-
* * * * ** * ** *
4517 TGAAACAAATATTTTATGACTAAACAAAAGGTTAGAACAATTTAAAATAGATAAT
123 TGAAACAATTGTTTTATAACAAAACAAAAGGACATAATGATTTGAAATAGATAAT
* ** * * ** * * * *
4572 TATTCTAATAGTTTTAACTAATT-ATACAGGTTCGACAAACACATTTATTTTTAAATCTCTTACT
1 T-TTCAAATAGTCATAATTATTTGA-ATTGGTT-AATAAACAAATTTA-TTTTAAATTTCTTACT
* * * * * * * *
4636 TATTAATAATTT-TAATATTATTAAATTAGT-TTTATTTTA-ACCTAATAAACTTCTACG-ATCA
62 TATTAAT--TTTGAAATATTAATAAATTAGTATTAATTTTATTCCAAATAAACTTATATGAAT-T
** * ** *
4697 GAAATGATTGTTTTTATGACAAAAC-AAA-GATCATAACAATTTGAGATTA-ATAAT
124 GAAACAATTG-TTTTATAACAAAACAAAAGGA-CATAATGATTTGA-AATAGATAAT
* * * ** * * * *
4751 TATTCAAATAGTTATAACTATTCGAACCAGTTTGATAAACAAATTTATTTTTTAAATATCTTATT
1 T-TTCAAATAGTCATAATTATTTGAA-TTGGTTAATAAACAAATTTA--TTTTAAATTTCTTACT
*** ** * * **
4816 TATTAATTTTTGAAATATTAATAAATTAGTA-TAATTTTATTTTGAATAAGTTTGTGTG-ATCAA
62 TATTAA-TTTTGAAATATTAATAAATTAGTATTAATTTTATTCCAAATAAACTTATATGAAT-TG
* * * *
4879 AAACAATTAG-TTTATAACAAAAGAAAAGGTCATAATGATTTGAATTAGATTAT
125 AAACAATT-GTTTTATAACAAAACAAAAGGACATAATGATTTGAAATAGATAAT
* * * * ** ** *
4932 TGTTCGAATAGCCATAATTATTTTAACTAATTCGGTAATCAAATTTATTTTTTAAATCTT-TTAC
1 T-TTCAAATAGTCATAATTATTTGAATTGGTT-AATAAACAAATTTA--TTTTAAAT-TTCTTAC
* * * ** * * * * *
4996 TTATTAATTTTAAAAATATTAATAAATTAGTGTT-A-TTTATTTCGTATAAGCTTGTATTAACTA
61 TTATTAATTTT-GAAATATTAATAAATTAGTATTAATTTTATTCCAAATAAACTTATATGAATTG
* * * * * * * *
5059 AAACAATTGCTTTATGACAAAACAAAAAGTCATAATAATTTTAAATAAACAAT
125 AAACAATTGTTTTATAACAAAACAAAAGGACATAATGATTTGAAATAGATAAT
* * * * * * *
5112 TGTTCAAATAGTAATAACTATTTGGACTT-G-TACGGTAAATAGATTTATTTTTTTAAAATCTCT
1 T-TTCAAATAGTCATAATTATTT-GAATTGGTTA--ATAAACAAATTTA---TTTT-AAATTTCT
* * * ** * *
5175 TTCTTATTAATTTTTG-AATGTTAATAATTTAGTATTAA-TTTATTCTGAATAAGCTTGTATGAA
58 TACTTATTAA-TTTTGAAATATTAATAAATTAGTATTAATTTTATTCCAAATAAACTTATATGAA
* * * * * * ** * * *
5238 CTAAAACAATTATTTTATGACTAAACAAAATGTTAGAACGATTTGACATAGATAAT
122 TTGAAACAATTGTTTTATAACAAAACAAAAGGACATAATGATTTGAAATAGATAAT
** ** ** * * *
5294 TATTTTAATAGTTTTAACCATATGAATTGGTTCGATAAAAAAAATTTATTTTTTAAA--TC-T-C
1 T-TTCAAATAGTCATAATTATTTGAATTGGTT-AAT-AAACAAATTTA--TTTTAAATTTCTTAC
* * * * * * *
5355 TTATTAATTTTTGAAATATTATTAAATTTGTATT-ATTTTAATCCAAAGAAGCTTGTA-CAA---
61 TTATTAA-TTTTGAAATATTAATAAATTAGTATTAATTTTATTCCAAATAAACTTATATGAATTG
* * * * *
5415 AAAAAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATTGATAAT
125 AAACAATTGTTTTATAACAAAACAAAAGGACATAATGATTTGAAATAGATAAT
* * * * * *** ** * * **
5468 CATTCATATAGTCTTAACTATTTGAACTGGTTTGGCAATTAGATTTATTTTTTAATTTTCTTGGT
1 -TTTCAAATAGTCATAATTATTTGAATTGG-TTAATAAACAAATTTA--TTTTAAATTTCTTACT
* * * *** * * * **
5533 TATTAATTTTGGGAATAATATTAAATTAGTATT-ATTTTATTTTGAACAAAATTGTATGAACAGA
62 TATTAATTTT-GAAATATTAATAAATTAGTATTAATTTTATTCCAAATAAACTTATATGAATTGA
* * * ** *
5597 ATCAATTGTTTGA-AAGAAAACAAATA-GTTATAATGATTTGTAATAGAT--T
126 AACAATTGTTTTATAACAAAACAAA-AGGACATAATGATTTGAAATAGATAAT
* * * * ** * *
5646 ATTCAAATAGTCAAAACTATTTGAAATGGTTTGGTAAATAGATTTACTTTTTAAATCTT-TTACT
1 TTTCAAATAGTCATAATTATTTGAATTGG-TTAATAAACAAATTTA--TTTTAAAT-TTCTTACT
* * * * * * ***
5710 GATTAATTTTTTAAATATTAATAACTTAGTATT--TTATT-TT--GAACAAACTTATATAAACAA
62 TATTAA-TTTTGAAATATTAATAAATTAGTATTAATT-TTATTCCAAATAAACTTATATGAATTG
* * * **
5770 AAACAATTATTTTATAACAAACCAAAAAGTA-ATAACAATTTGAAATAGATAAT
125 AAACAATTGTTTTATAACAAAAC-AAAAGGACATAATGATTTGAAATAGATAAT
* * * * * * *
5823 TATTCACATAGTTATAATTATTTGAACTGGTTTAGTAAATAAAATTATCTTCTAAATCTCTTACT
1 T-TTCAAATAGTCATAATTATTTGAATTGG-TTAATAAACAAATTTAT-TT-TAAATTTCTTACT
* * * * * * *
5888 TATAAATTTTTAAAATATTAATAAATTAGT-TTCATTCTATTCCGAATAAGCTTGTAT-AAGTTG
62 TATTAA-TTTTGAAATATTAATAAATTAGTATTAATTTTATTCCAAATAAACTTATATGAA-TTG
* * * * **
5951 AAATAATTGTTTTATGACAAAATAAAAAGGGCATAACAATTTGAAATAGATAAT
125 AAACAATTGTTTTATAACAAAA-CAAAAGGACATAATGATTTGAAATAGATAAT
* * * * * ** * * *
6005 TGTTCATATAATCTTAACTATTTGAATTGATTTGTAAACAAATTTATTTTTTAGATCTCTTAGTT
1 T-TTCAAATAGTCATAATTATTTGAATTGGTTAATAAACAAATTTA--TTTTAAATTTCTTACTT
* * * * ** **
6070 ATGAATTTTCAAAATATTATTAAATTAGTATT-ATGTTATTCTGAATAAACTTATATGAA-CAAA
63 ATTAATTTT-GAAATATTAATAAATTAGTATTAATTTTATTCCAAATAAACTTATATGAATTGAA
* * ** * * * **
6133 ATTAATTATTTTATGGCAGAATAAAA-GATTATAACAATTTGAAATAGATAAT
127 A-CAATTGTTTTATAACAAAACAAAAGGA-CATAATGATTTGAAATAGATAAT
* * * * *
6185 TGTTCAAATAGTTATAACTATTTGAATTGATTCAATAAACATATTTATTTTTTAAATCTCTTACT
1 T-TTCAAATAGTCATAATTATTTGAATTGGTT-AATAAACAAATTTA--TTTTAAATTTCTTACT
6250 AATTCTTAAA
Statistics
Matches: 2817, Mismatches: 633, Indels: 387
0.73 0.16 0.10
Matches are distributed among these distances:
165 1 0.00
166 51 0.02
167 1 0.00
168 42 0.01
169 22 0.01
170 1 0.00
172 5 0.00
173 24 0.01
174 121 0.04
175 179 0.06
176 172 0.06
177 226 0.08
178 178 0.06
179 222 0.08
180 360 0.13
181 564 0.20
182 326 0.12
183 94 0.03
184 159 0.06
185 23 0.01
186 3 0.00
187 32 0.01
188 9 0.00
189 2 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (177 bp):
TTTCAAATAGTCATAATTATTTGAATTGGTTAATAAACAAATTTATTTTAAATTTCTTACTTATT
AATTTTGAAATATTAATAAATTAGTATTAATTTTATTCCAAATAAACTTATATGAATTGAAACAA
TTGTTTTATAACAAAACAAAAGGACATAATGATTTGAAATAGATAAT
Found at i:5915 original size:355 final size:352
Alignment explanation
Indices: 1945--6249 Score: 1741
Period size: 362 Copynumber: 12.1 Consensus size: 352
1935 ACAAACACAT
* * * * ** *
1945 TTTTTTATATCTCTTACTTATTAATTTTT-AGAATATTATTAATTTAGCAACATTTTAGTTTGAA
1 TTTTTTAAATCTCTTACTTATTAATTTTTGA-AATATTAATAAATTAGTATTATTTTATTTTGAA
* ** * * *
2009 TAAG-CTGTATGAACAGAAACAATTGTTTTATTGATTAAA-ACAAAGGATCATAATGATCTAAGA
65 TAAGATTGTATGAACA-AAACAATTG-TTTAAAGA--AAACA-AAAGG-TTATAATGATTTGA-A
* * * * * * * *
2072 TAGATAATTGTTCAAATAGTTATATCTAATTTGAACTAGTTCGATAAACAAATTTA-GTTTTAAA
123 TAG---ATTATTCAAATAGTCATAACT-ATTTGAAATGGTTCGGTAAATAAATTTATTTTTTAAA
* * **
2136 TC---T-CTTATTAATTTTTTAAAATATTAATTAAAATAATATTATTTTATTTCTGAATAATTTT
184 TCTTTTACTTATTAA-TTTTTAAAATATTAA-T-AAAT--TAGTATTTTATTT-TGAACAAACTT
* * * * * **
2197 GTATGAATAGAAACAATTATTTTATGACAAAACAAAATGTCATAATGATTTGAAATAGATAA-TA
243 ATATAAACAAAAACAATTATTTTATGACAAAACAAAAAGTCATAACAATTTGAAATAGATAATTA
* * * * *
2261 GTTCAAATAGTCATAA-TAATTTGAACTTGTTCGATAAATAGATTTA
308 -TTCAAATAGTTATAACT-ATTTGAACTGGTTTGGTAAATAAATTTA
* * *
2307 TTTTTTAAATCTTTTTACTTTTTAATTGTCTT--AATATTAATTAATTTA-TATTATTTTA-TTT
1 TTTTTTAAATC-TCTTACTTATTAATT-T-TTGAAATATTAA-TAAATTAGTATTATTTTATTTT
* * * * * * *
2368 GAAATAAGCTTGTATGAATAGAAAAAATTATTTTATGACAAACAAAAGG-T-T-AT-A---G--C
62 G-AATAAGATTGTATGAACA-AAACAATTGTTTAAAGA-AAACAAAAGGTTATAATGATTTGAAT
* * * * * * * *
2424 A-A-T-TTCAAATAGTCAGAATTA-TTGAAACTTGTTCGATAAACAGATTCATTTTTTAAATCTC
124 AGATTATTCAAATAGTCATAACTATTTGAAA-TGGTTCGGTAAATAAATTTATTTTTTAAATCTT
* * * * ** * *
2485 TTAATTATTAATTTTTAGAATATTAATAATTTGGTATTATTTTATTTCAAATAAACTTATATGAA
188 TTACTTATTAATTTTTAAAATATTAATAA-AT--TAGTATTTTATTTTGAACAAACTTATATAAA
*** * * * * * * * *
2550 TTGAAACAATTCTTTTCTAACCAAACAAAAGGACAT-ACTGATTTGAAATAGATAATTATTCGAA
250 CAAAAACAATTATTTTATGACAAAACAAAAAGTCATAAC-AATTTGAAATAGATAATTATTCAAA
* *** ** * *** * *
2614 TAGTCATGGTTATTTGATTTAGTTCAATAAACATATTTA
314 TAGTTATAACTATTTGAACTGGTTTGGTAAATAAATTTA
* * * * ***
2653 --TTTTAAATTTTTTACTTATTAATTGTTGAAATATTAATAAAATTAGTATTAATTTTAATCCAA
1 TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAAT-AAATTAGTATT-ATTTTATTTTGA
* * ** * * *
2716 ATAAGCTTATATGAATTGAAACAATTGTTTTATAATAGAACAAAAAGTTATAATGATTTGACATA
64 ATAAGATTGTATGAA-CAAAACAATTG-TTTA-AAGAAAACAAAAGGTTATAATGATTTGA-ATA
* * * * * * *
2781 AATAATTTGCCAAATAGTCATTATTATTTGAACTGGTTTGATAAATAAATTTA-TTTTTAAATC-
125 GATTA-TT--CAAATAGTCATAACTATTTGAAATGGTTCGGTAAATAAATTTATTTTTTAAATCT
* * *** *
2844 --TA-TTATTAATTTTTGAAATA-TAATAGATTAGTATTACTTCTATTCCAAACAAACTTATATG
187 TTTACTTATTAATTTTTAAAATATTAATAAATTAGTA-T--TT-TATTTTGAACAAACTTATATA
* * * *
2905 AACAAAAACATTTGTTTTATGACAAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCA
248 AACAAAAACAATTATTTTATGAC-AAAACAAAAAGTCATAACAATTTGAAATAGATAATTATTCA
* * * * *
2970 AATAGTTATAATTATTTGAATTGGTTAGGTAAACAAAATTA
312 AATAGTTATAACTATTTGAACTGGTTTGGTAAATAAATTTA
* * * ***
3011 TTTTTTCAAAT-TGCTTACTTATTAATCTTTGAAATATTAATAAATTTGTTTTA-TTTATTCCAA
1 TTTTTT-AAATCT-CTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGA
* * * * * * *
3074 ATAAGCTAGTATGAATTGC-AAA-AATTGTTTTATGACAAAACAAATGATCATAAT-ATTTGAAA
64 ATAAGATTGTATGAA---CAAAACAATTG-TTTA-AAGAAAACAAAAGGTTATAATGATTTG-AA
* * * * * * * * * *
3136 TAGATAATTGTTTCATATAGTCTTAAATATTTGAACTGGTTCAGCAAACAAATTTA-GTTTTAAT
123 TAG---ATT-ATTCAAATAGTCATAACTATTTGAAATGGTTCGGTAAATAAATTTATTTTTTAAA
* * * * * *** * * *
3200 TCTCTTAGTTATTAATTTTTGAAATATT-ATTAGTTAGAATTATTTTATTCCAAATAAGCTTGTA
184 TCTTTTACTTATTAATTTTTAAAATATTAATAAATTAG---TATTTTATTTTGAACAAACTTATA
* * * * * * * * *
3264 CAAACATAAATAATTGTTTTATAACAGAACAAAAGGTTATAACAATTTGAAGTATACAATTGTTT
246 TAAACAAAAACAATTATTTTATGACAAAACAAAAAGTCATAACAATTTGAA--AT---A--G-AT
* * ** * * *
3329 TATTGTTCAAATAGTCCTAACTATTTGAGCTAGTTTGGTAAATAGATTTA
303 AATTATTCAAATAGTTATAACTATTTGAACTGGTTTGGTAAATAAATTTA
* *
3379 TTTTTTAAA--TC-T-CTTATTAATTTTTGAAAGATT-ATAAGTTAGTATTATTTTA-TTTGAAT
1 TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAAT
* * ** * * * *
3438 AAGCTTGAATGATTA-AAAACGTTTG-TTATATGACTACACAAAATGTAATAATGATTTGAAATT
66 AAGATTGTATGA--ACAAAACAATTGTTTA-AAGA--AAACAAAAGGTTATAATGATTTG-AA-T
* * ** * * * * * * *
3501 AATAATTATTAAAACGGCCAGAATTATTTGAAATGTTTCAGTAAACAAATTTATTTTTTAAGTC-
124 -A-GATTATTCAAATAGTCATAACTATTTGAAATGGTTCGGTAAATAAATTTATTTTTTAAATCT
** * * * * *
3565 ---ACTTATTAATTTTTGGAATATTAATAATTTGTATTATTTTATTTTGAATAAACTTGTATGAA
187 TTTACTTATTAATTTTTAAAATATTAATAA-AT-TAGTATTTTATTTTGAACAAACTTATATAAA
** ** * ** * **
3627 CTGAAATGATTATTTTATGA-AAAACAAAAGGTCATAATGATTTAAAATAGATAATTATTCATGT
250 CAAAAACAATTATTTTATGACAAAACAAAAAGTCATAACAATTTGAAATAGATAATTATTCAAAT
* * ** ** * *
3691 AGTCTTTAACTGTTTGAACTACTTTAATAAACAGATTTA
315 AGT-TATAACTATTTGAACTGGTTTGGTAAATAAATTTA
** * *
3730 TTTTTTAAATCTCTTTA-TTATTAATTTTCAAAATATTATTAAATTAGCATTATTTTATTCTT-A
1 TTTTTTAAATCTC-TTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATT-TTGA
* * * * **
3793 ATAAGCTTGTATGAACTGAAACAATTATTTTATAATAGGACAAAAGGTTATAATGATTTGAAATA
64 ATAAGATTGTATGAAC-AAAACAATT-GTTTA-AAGAAAACAAAAGGTTATAATGATTTG-AATA
* * * * * * * * **
3858 GGTAATTC---T--TCA-AA-TA--GGAACTCGTTTGGTAAATAGAGTTATTTTTTAAATCTCCT
125 GATTATTCAAATAGTCATAACTATTTGAAATGGTTCGGTAAATAAATTTATTTTTTAAATCTTTT
* * * * * * ** * * * **
3914 ATTTATTAA-TTTTGAAATAGTAATAAATTAGTATTATTTTATTCTAAATAGGCTTGTGT-GATG
190 ACTTATTAATTTTTAAAATATTAATAAATTAG---TATTTTATTTTGAACAAACTTATATAAACA
* * ** * * * * *
3977 AAAA-TATTGTTTTATGACAAAAC-AAAAGTTCATAATGATTTGAATTATATAATTGTTGAAATG
252 AAAACAATTATTTTATGACAAAACAAAAAG-TCATAACAATTTGAAATAGATAATTATTCAAATA
** * * ** * * * *
4040 GCCACAATTATTTGAACTAATTTAGTAAACAGATTCA
316 GTTATAACTATTTGAACTGGTTTGGTAAATAAATTTA
* ** * * * * **
4077 CTTTTTAAA--TC--ACTCGTTAATTTTTGGATTATTAAAAAATTATTATTATTTTATTTCAAAT
1 TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAAT
* * * * * * ** *
4138 AAGCTTGTATGAACTGAAACAATTGTTTATGACAAAATAAAAGGTCATAATCTTTTTAAATATAC
66 AAGATTGTATGAAC-AAAACAATTGTTTA-AAGAAAACAAAAGGTTATAAT-GATTT-GA-ATA-
* * * *** * *
4203 AATTATTCAAATAGTCATAACTATTTGAATTTGTTCAAAAAAATAGATTTATTTTTTTAAATCTC
125 GATTATTCAAATAGTCATAACTATTTGAAATGGTTC-GGTAAATAAATTTA-TTTTTTAAATCTT
* * * * * * *
4268 TTGCTTATTAATTTTTAAAATATTATTAAATTAGTATTTTTTTTTATTTTGCATAAGCTTTTATG
188 TTACTTATTAATTTTTAAAATATTAATAAATTAGTA-----TTTTATTTTGAACAAACTTATATA
* * * * *
4333 AACTACAACAA-TATTTTTATAACAAAAC-AAAGGTCATAACAATTTTAAATA-AGTAATTATTC
248 AACAAAAACAATTA-TTTTATGACAAAACAAAAAGTCATAACAATTTGAAATAGA-TAATTATTC
* ** ** * *
4395 AAATAGTCATAAGAATTTGAGTTTGTTTGGTAAATAGATTTA
311 AAATAGTTATAACTATTTGAACTGGTTTGGTAAATAAATTTA
* * * ** * * *
4437 TTTTTTTCAAATATCTTGCTTATTGATTTTTTTAATATTAATATATTAGGACT-TTTTATTTCT-
1 -TTTTTT-AAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTT-TG
* * ** * * * * * ** *
4500 AATAAGCTTATATGATATGAAACAAATATTTTATGACTAAACAAAAGGTTAGAACAATTTAAAAT
63 AATAAGATTGTATGA-ACAAAACAATTGTTTAAAGA--AAACAAAAGGTTATAATGATTT-GAAT
* ** * ** * *
4565 AGATAATTATTCTAATAGTTTTAACTAATTAT-ACA-GGTTCGACAAACACATTTA-TTTTTAAA
124 AG---ATTATTCAAATAGTCATAACT-ATT-TGAAATGGTTCGGTAAATAAATTTATTTTTTAAA
* *
4627 TCTCTTACTTATTAATAATTTT--AATATTATTAAATTAG--TTTTATTTT-AACCTAATAAACT
184 TCTTTTACTTATTAAT--TTTTAAAATATTAATAAATTAGTATTTTATTTTGAA-C----AAACT
* ** * * ** * * *
4687 TCTACGATCAGAAATGATTGTTTTTATGACAAAACAAAGA-TCATAACAATTTGAGATTA-ATAA
242 TATATAAACAAAAACAATT-ATTTTATGACAAAACAAAAAGTCATAACAATTTGA-AATAGATAA
* ** * *
4750 TTATTCAAATAGTTATAACTATTCGAACCAGTTTGATAAACAAATTTA
305 TTATTCAAATAGTTATAACTATTTGAACTGGTTTGGTAAATAAATTTA
* * *
4798 TTTTTTAAATATCTTATTTATTAATTTTTGAAATATTAATAAATTAGTATAATTTTATTTTGAAT
1 TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAAT
* * * * * *
4863 AAGTTTGTGTGATCAAAAACAATTAGTTTATAACAAAAGAAAAGGTCATAATGATTTGAATTAGA
66 AAGATTGTATGAAC-AAAACAATT-GTTTA-AAGAAAACAAAAGGTTATAATGATTTGAA-TAGA
* * * * * **
4928 TTATTGTTCGAATAGCCATAATTATTTTAACTAATTCGGT-AATCAAATTTATTTTTTAAATCTT
127 TTA---TTCAAATAGTCATAACTATTTGAAATGGTTCGGTAAAT-AAATTTATTTTTTAAATCTT
* * * * * * * *
4992 TTACTTATTAATTTTAAAAATATTAATAAATTAGTGTTATTTATTTCGTATAAGCTTGTATTAAC
188 TTACTTATTAATTTTTAAAATATTAATAAATTAGT-AT-TTTATTTTGAACAAACTTATATAAAC
* ** * * * * *
5057 TAAAACAATTGCTTTATGACAAAACAAAAAGTCATAATAATTTTAAATAAACAATTGTTCAAATA
251 AAAAACAATTATTTTATGACAAAACAAAAAGTCATAACAATTTGAAATAGATAATTATTCAAATA
* * * ** *
5122 GTAATAACTATTTGGACTTGTACGGTAAATAGATTTA
316 GTTATAACTATTTGAACTGGTTTGGTAAATAAATTTA
* * * * *
5159 TTTTTTTAAAATCTCTTTCTTATTAATTTTTG-AATGTTAATAATTTAGTATTAATTTATTCTGA
1 -TTTTTT-AAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGA
* * * * * * *
5223 ATAAGCTTGTATGAACTAAAACAATTATTTTATGACTAAACAAAATGTTAGAACGATTTGACATA
64 ATAAGATTGTATGAAC-AAAACAATTGTTTAAAGA--AAACAAAAGGTTATAATGATTTGA-ATA
** ** * * * * *
5288 GATAATTATTTTAATAGTTTTAACCATATGAATTGGTTCGATAAAAAAAATTTATTTTTTAAATC
125 G---ATTATTCAAATAGTCATAACTATTTGAAATGGTTCGGT-AAATAAATTTATTTTTTAAATC
* * * **
5353 ---T-CTTATTAATTTTTGAAATATTATTAAATTTGTA--TTATTTT-AATCCAAA-GAAGCT-T
186 TTTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTTTATTTTGAA--CAAACTTA--TAT
** * * ** * *
5409 GTACAAAAAAAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATTGATAATCATTCA
247 AAACAAAAACAATTATTTTATGACAAAACAAAAAGTCATAACAATTTGAAATAGATAATTATTCA
* * * *
5474 TATAGTCT-TAACTATTTGAACTGGTTTGGCAATTAGATTTA
312 AATAGT-TATAACTATTTGAACTGGTTTGGTAAATAAATTTA
* * ** * * * * *
5515 TTTTTTAATTTTCTTGGTTATTAATTTTGGGAATAATATTAAATTAGTATTATTTTATTTTGAAC
1 TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAAT
* *
5580 AAAATTGTATGAACAGAATCAATTGTTTGAAAGAAAACAAATA-GTTATAATGATTTGTAATAGA
66 AAGATTGTATGAACA-AAACAATTGTTT-AAAGAAAACAAA-AGGTTATAATGATTTG-AATAGA
* * * *
5644 TTATTCAAATAGTCAAAACTATTTGAAATGGTTTGGTAAATAGATTTACTTTTTAAATCTTTTAC
127 TTATTCAAATAGTCATAACTATTTGAAATGGTTCGGTAAATAAATTTATTTTTTAAATCTTTTAC
* * *
5709 TGATTAATTTTTTAAATATTAATAACTTAGTATTTTATTTTGAACAAACTTATATAAACAAAAAC
192 TTATTAATTTTTAAAATATTAATAAATTAGTATTTTATTTTGAACAAACTTATATAAACAAAAAC
* * * *
5774 AATTATTTTATAACAAACCAAAAAGTAATAACAATTTGAAATAGATAATTATTCACATAGTTATA
257 AATTATTTTATGACAAAACAAAAAGTCATAACAATTTGAAATAGATAATTATTCAAATAGTTATA
* * *
5839 ATTATTTGAACTGGTTTAGTAAATAAAATTA
322 ACTATTTGAACTGGTTTGGTAAATAAATTTA
* * * * * **
5870 TCTTCTAAATCTCTTACTTATAAATTTTTAAAATATTAATAAATTAGT-TTCATTCTATTCCGAA
1 TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATT-ATTTTATTTTGAA
* ** * * * * ** **
5934 TAAGCTTGTAT-AAGTTGAAATAATTGTTTTATGACAAAATAAAAAGGGCATAACAATTTGAAAT
65 TAAGATTGTATGAA--CAAAACAATTG-TTTA-AAGAAAA-CAAAAGGTTATAATGATTTG-AAT
* * * * * * * * *
5998 AGATAATTGTTCATATAATCTTAACTATTTGAATTGATT-TGTAAACAAATTTATTTTTTAGATC
124 AG---ATTATTCAAATAGTCATAACTATTTGAAATGGTTCGGTAAATAAATTTATTTTTTAAATC
* * * * * * * *
6062 TCTTAGTTATGAATTTTCAAAATATTATTAAATTAGTATTATGTTATTCTGAATAAACTTATATG
186 TTTTACTTATTAATTTTTAAAATATTAATAAATTAGTA-T-T-TTATTTTGAACAAACTTATATA
** * * * * *
6127 AACAAAATTAATTATTTTATGGCAGAA-TAAAAGATTATAACAATTTGAAATAGATAATTGTTCA
248 AACAAAAACAATTATTTTATGACAAAACAAAAAG-TCATAACAATTTGAAATAGATAATTATTCA
* * *** * *
6191 AATAGTTATAACTATTTGAATTGATTCAATAAACATATTTA
312 AATAGTTATAACTATTTGAACTGGTTTGGTAAATAAATTTA
6232 TTTTTTAAATCTCTTACT
1 TTTTTTAAATCTCTTACT
6250 AATTCTTAAA
Statistics
Matches: 2999, Mismatches: 712, Indels: 464
0.72 0.17 0.11
Matches are distributed among these distances:
341 2 0.00
342 23 0.01
343 95 0.03
344 33 0.01
345 84 0.03
346 110 0.04
347 75 0.03
348 70 0.02
349 39 0.01
350 35 0.01
351 68 0.02
352 2 0.00
353 9 0.00
354 92 0.03
355 248 0.08
356 163 0.05
357 148 0.05
358 182 0.06
359 214 0.07
360 247 0.08
361 287 0.10
362 380 0.13
363 167 0.06
364 38 0.01
365 71 0.02
366 62 0.02
367 8 0.00
368 47 0.02
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.43
Consensus pattern (352 bp):
TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAAT
AAGATTGTATGAACAAAACAATTGTTTAAAGAAAACAAAAGGTTATAATGATTTGAATAGATTAT
TCAAATAGTCATAACTATTTGAAATGGTTCGGTAAATAAATTTATTTTTTAAATCTTTTACTTAT
TAATTTTTAAAATATTAATAAATTAGTATTTTATTTTGAACAAACTTATATAAACAAAAACAATT
ATTTTATGACAAAACAAAAAGTCATAACAATTTGAAATAGATAATTATTCAAATAGTTATAACTA
TTTGAACTGGTTTGGTAAATAAATTTA
Found at i:5966 original size:536 final size:534
Alignment explanation
Indices: 4729--6210 Score: 1367
Period size: 536 Copynumber: 2.8 Consensus size: 534
4719 AACAAAGATC
* * ** *
4729 ATAACAATTTGAGATTA-ATAATTATTCAAATAGTTATAACTATTCGAACCAGTTTGATAAACAA
1 ATAACAATTTGA-AATAGATAATTATTC-AATAGTTATAACTATTTGAACTGGTTTGATAAAAAA
* * * *
4793 ATTTATTTTTTAAATATCTTATTTATTAATTTTTGAAATATTAATAAATTAGTATAATTTTATTT
64 AATTATTTTTTAAATCTCTTA-TTA-TAATTTTTGAAATATTAATAAATTAGT-TTATTTTATTC
* * * * * *
4858 TGAATAAGTTTGTGTGATCAAAAACAATTAG-TTTATAACAAAAGAAAAGGTCATAATGATTTG-
126 CGAATAAGCTTGTATAAT--AAAA-AATT-GTTTTATGACAAAAAAAAAGGTCATAATGATTTGA
* * * * * * *
4921 AATTAGATTATTGTTCGA-ATAGCCATAATTATTTTAACTAATTCGGTAATCAAATTTATTTTTT
187 AATT-GATAATTGTTC-ATATAGTCTTAACTATTTGAACTGATTTGGTAATCAAATTTATTTTTT
* * * * * * *
4985 AAATCTT-TTACTTATTAATTTTAAAAATATTAATAAATTAGTGTTA-TTTATTTCGTATAAGCT
250 -AATTTTCTTAGTTATTAATTTTAAAAATATTATTAAATTAGTATTATTTTATTTTGAATAAACT
* * *
5048 TGTATTAACTAAAACAATTGCTTTATGACAAAACAAAAAGTCATAATAATTTTAAATAAACAATT
314 TGTATGAAC-AAATCAATTGCTTTATAACAAAACAAAAAGTCATAATAATTTTAAAT-AACAATT
* * * * *
5113 GTTCAAATAGTAATAACTATTTGGACTTGTACGGTAAATAGATTTATTTTTTTAAAATCTCTTTC
377 ATTCAAATAGTAATAACTATTTGAAATGGTACGGTAAATAGATTTATCTTTTTAAAATCTCTTTC
* * * * * * * * *
5178 TTATTAATTTTTGAATGTTAATAATTTAGTATTAATTTATTCTGAATAAGCTTGTATGAACTAAA
442 TGATTAATTTTTAAATATTAATAACTTAGTATT-ATTTATTCTGAACAAACTTATATAAACAAAA
* * *
5243 ACAATTATTTTATGACTAAACAAAATGTT
506 ACAATTATTTTATAACTAAACAAAAAGTA
* * * * * * * * *
5272 AGAACGATTTGACATAGATAATTATTTTAATAGTTTTAACCATATGAATTGGTTCGATAAAAAAA
1 ATAACAATTTGAAATAGATAATTA-TTCAATAGTTATAACTATTTGAACTGGTTTGATAAAAAAA
* * * *
5337 ATTTATTTTTTAAATCTCTTA-T-TAATTTTTGAAATATTATTAAATTTGTATTATTTTAATCCA
65 A-TTATTTTTTAAATCTCTTATTATAATTTTTGAAATATTAATAAATTAGT-TTATTTTATTCCG
* * * *
5400 AAGAAGCTTGTACAA-AAAAAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATTGA
128 AATAAGCTTGTATAATAAAAAATTGTTTTATGACAAAAAAAAAGGTCATAATGATTTGAAATTGA
** * * * *
5464 TAATCATTCATATAGTCTTAACTATTTGAACTGGTTTGGCAATTAGATTTATTTTTTAATTTTCT
193 TAATTGTTCATATAGTCTTAACTATTTGAACTGATTTGGTAATCAAATTTATTTTTTAATTTTCT
* *** * * *
5529 TGGTTATTAATTTTGGGAATAATATTAAATTAGTATTATTTTATTTTGAACAAAATTGTATGAAC
258 TAGTTATTAATTTTAAAAATATTATTAAATTAGTATTATTTTATTTTGAATAAACTTGTATGAAC
* * * * *
5594 AGAATCAATTG-TTTGA-AAGAAAACAAATAGTTATAATGATTTGT-AAT-A-GATTATTCAAAT
323 A-AATCAATTGCTTT-ATAACAAAACAAAAAGTCATAATAATTT-TAAATAACAATTATTCAAAT
**
5654 AGTCAA-AACTATTTGAAATGGTTTGGTAAATAGATTTA-CTTTTT-AAATCT-TTTACTGATTA
385 AGT-AATAACTATTTGAAATGGTACGGTAAATAGATTTATCTTTTTAAAATCTCTTT-CTGATTA
*
5715 ATTTTTTAAATATTAATAACTTAGTA-T-TTTATTTTGAACAAACTTATATAAACAAAAACAATT
448 A-TTTTTAAATATTAATAACTTAGTATTATTTATTCTGAACAAACTTATATAAACAAAAACAATT
5778 ATTTTATAAC-AAACCAAAAAGTA
512 ATTTTATAACTAAA-CAAAAAGTA
* *
5801 ATAACAATTTGAAATAGATAATTATTCACATAGTTATAATTATTTGAACTGGTTT-AGTAAATAA
1 ATAACAATTTGAAATAGATAATTATTCA-ATAGTTATAACTATTTGAACTGGTTTGA-TAAAAAA
* * * *
5865 AATTATCTTCTAAATCTCTTACTTATAAATTTTTAAAATATTAATAAATTAGTTTCATTCTATTC
64 AATTATTTTTTAAATCTCTTA-TTAT-AATTTTTGAAATATTAATAAATTAGTTT-ATTTTATTC
* * **
5930 CGAATAAGCTTGTATAAGTTGAAATAATTGTTTTATGACAAAATAAAAAGGGCATAACAATTTGA
126 CGAATAAGCTTGTATAA--T-AAAAAATTGTTTTATGACAAAA-AAAAAGGTCATAATGATTTGA
* * * *
5995 AATAGATAATTGTTCATATAATCTTAACTATTTGAATTGATTT-GTAAACAAATTTATTTTTTAG
187 AATTGATAATTGTTCATATAGTCTTAACTATTTGAACTGATTTGGTAATCAAATTTATTTTTTA-
* * * * * *
6059 A-TCTCTTAGTTATGAATTTTCAAAATATTATTAAATTAGTATTATGTTATTCTGAATAAACTTA
251 ATTTTCTTAGTTATTAATTTTAAAAATATTATTAAATTAGTATTATTTTATTTTGAATAAACTTG
* ** ** * * * * * * *
6123 TATGAACAAAATTAATTATTTTATGGCAGAA-TAAAAGATTATAACAATTTGAAATAGATAATTG
316 TATGAAC-AAATCAATTGCTTTATAACAAAACAAAAAG-TCATAATAATTTTAAATA-ACAATTA
*
6187 TTCAAATAGTTATAACTATTTGAA
378 TTCAAATAGTAATAACTATTTGAA
6211 TTGATTCAAT
Statistics
Matches: 753, Mismatches: 149, Indels: 77
0.77 0.15 0.08
Matches are distributed among these distances:
528 24 0.03
529 95 0.13
530 4 0.01
531 17 0.02
532 70 0.09
533 40 0.05
534 3 0.00
535 6 0.01
536 243 0.32
537 113 0.15
539 2 0.00
540 68 0.09
542 3 0.00
543 45 0.06
544 20 0.03
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.42
Consensus pattern (534 bp):
ATAACAATTTGAAATAGATAATTATTCAATAGTTATAACTATTTGAACTGGTTTGATAAAAAAAA
TTATTTTTTAAATCTCTTATTATAATTTTTGAAATATTAATAAATTAGTTTATTTTATTCCGAAT
AAGCTTGTATAATAAAAAATTGTTTTATGACAAAAAAAAAGGTCATAATGATTTGAAATTGATAA
TTGTTCATATAGTCTTAACTATTTGAACTGATTTGGTAATCAAATTTATTTTTTAATTTTCTTAG
TTATTAATTTTAAAAATATTATTAAATTAGTATTATTTTATTTTGAATAAACTTGTATGAACAAA
TCAATTGCTTTATAACAAAACAAAAAGTCATAATAATTTTAAATAACAATTATTCAAATAGTAAT
AACTATTTGAAATGGTACGGTAAATAGATTTATCTTTTTAAAATCTCTTTCTGATTAATTTTTAA
ATATTAATAACTTAGTATTATTTATTCTGAACAAACTTATATAAACAAAAACAATTATTTTATAA
CTAAACAAAAAGTA
Found at i:7092 original size:179 final size:177
Alignment explanation
Indices: 6409--7371 Score: 671
Period size: 179 Copynumber: 5.4 Consensus size: 177
6399 TAACAAATTG
* * * * * *
6409 AAATAGATAATTGTTCAAAT-GCCCATAATTATTTGAACTAATTCAATAAACTGATTTATTTTTT
1 AAATAGATAATTATTCAAATAG--TATAACTATTTGAACTAGTTCAAAAAACAGATTTA--TTTT
*
6473 TTAAATCTCTT-ACTTATTAATTTTCT-AAATATTAATAAAGTAGTATTATTTTATTTTTG-ATA
62 TTAAATCTCTTGA-TTATTAATTTT-TGAAATATTAATAAAGTAGTATTATTTTA-TTCTGAATA
* * * * * * * *
6535 AACTTTTATGAATTGAAATAATTGTTTTATGAGAAAACAAAAATTCATAACGATTTT
124 AGCTTGTATGAATTGAAACAATTATTTTATGACAAAAC-AAAA-TCGTTATGA-TTT
* * * * * *
6592 AAGTAGATAATTATTCAAATAATCATAACAATTTAAACTTA-TTCGATAAACAGATTTATTTTTT
1 AAATAGATAATTATTCAAATAGT-ATAACTATTTGAAC-TAGTTCAAAAAACAGATTTATTTTTT
* * * * *
6656 CAAATCTCTTGCTTATTAATTTTTTAAATGTTAATAAATTAGTATT-TATTT-TTCTAAATAAGC
64 -AAATCTCTTGATTATTAATTTTTGAAATATTAATAAAGTAGTATTAT-TTTATTCTGAATAAGC
* * * *
6719 TTGTATGAACT-AAAAATATTATTTTATGACTAAACAAAA-AGTTACAATGATTT
127 TTGTATGAATTGAAACA-ATTATTTTATGACAAAACAAAATCGTT---ATGATTT
* * * * ** *
6772 CAAATACATAATTATTCTAATAGTCTTAA-TCATTTGAACTAATTCAGCAAACACATTTATTTTT
1 -AAATAGATAATTATTCAAATAGT-ATAACT-ATTTGAACTAGTTCAAAAAACAGATTTATTTTT
** * * * *
6836 TAAATCTC----TTATTAATTTTCAAAATTTTATTAAATTAGTATTATTTT-TATCCGAATAAGC
63 TAAATCTCTTGATTATTAATTTTTGAAATATTAATAAAGTAGTATTATTTTAT-TCTGAATAAGC
6896 TTGTATG-ATTAGAAACAATT-TTTTATGACAAAACAAAGATCGTTATGATTT
127 TTGTATGAATT-GAAACAATTATTTTATGACAAAACAAA-ATCGTTATGATTT
* * * * * *
6947 AAGATTGATATTTGTTCAAATAGTAGTAACTATTTGAACTAGTTCAAAAAATAGCTTTAGTTTTT
1 AA-ATAGATAATTATTCAAATAGTA-TAACTATTTGAACTAGTTCAAAAAACAGATTTATTTTTT
* * * *
7012 AAATCTCTTGAATAATAATTTTTGAAATATTAATAAAGTAGTATTATTTTATTTTGAATAAGATT
64 AAATCTCTTGATTATTAATTTTTGAAATATTAATAAAGTAGTATTATTTTATTCTGAATAAGCTT
* * * * * *
7077 TTATGAACTGAAACAATTGTTTTAGGGCAAAA-AAAA-CGGTCAAAATGATTTT
129 GTATGAATTGAAACAATTATTTTATGACAAAACAAAATC-GT---TATGA-TTT
* * * * * * * *
7129 CAATCGATAATTATTCAAATAGTCATATCTATTTGAACTTGTTCGATAAATAGA-AT-TTTTTTA
1 AAATAGATAATTATTCAAATAGT-ATAACTATTTGAACTAGTTCAAAAAACAGATTTATTTTTTA
* * * **
7192 AATCTCTTGCTTACTAATTTTTTG-AATGTTAATAAA-TAAGTATTATTTTATTCCAAATAAGCT
65 AATCTCTTGATTATTAA-TTTTTGAAATATTAATAAAGT-AGTATTATTTTATTCTGAATAAGCT
* * *
7255 TGTATGAATTGAAATAATTATTTTATGACTAAACAAAA-GGTTAAAATGATTT
128 TGTATGAATTGAAACAATTATTTTATGACAAAACAAAATCGTT---ATGATTT
* * * *
7307 AAAATAGATAATTATTCTAATAGTCTTAACAATTTGAACTAGTTCAACAAAA-ATATTTCATTTT
1 -AAATAGATAATTATTCAAATAGT-ATAACTATTTGAACTAGTTCAA-AAAACAGATTT-ATTTT
7371 T
62 T
7372 ATTATTAAAT
Statistics
Matches: 619, Mismatches: 113, Indels: 97
0.75 0.14 0.12
Matches are distributed among these distances:
174 2 0.00
175 60 0.10
176 53 0.09
177 22 0.04
178 15 0.02
179 182 0.29
180 52 0.08
181 135 0.22
182 52 0.08
183 44 0.07
184 2 0.00
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.42
Consensus pattern (177 bp):
AAATAGATAATTATTCAAATAGTATAACTATTTGAACTAGTTCAAAAAACAGATTTATTTTTTAA
ATCTCTTGATTATTAATTTTTGAAATATTAATAAAGTAGTATTATTTTATTCTGAATAAGCTTGT
ATGAATTGAAACAATTATTTTATGACAAAACAAAATCGTTATGATTT
Found at i:7850 original size:18 final size:18
Alignment explanation
Indices: 7802--7852 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
7792 AAAAAAAAAG
*
7802 ATCATAACTATTTGAAATA
1 ATCATAACTATTT-AAACA
* *
7821 A--ATAATTGTTTAAACA
1 ATCATAACTATTTAAACA
7837 ATCATAACTATTTAAA
1 ATCATAACTATTTAAA
7853 AAATAAATTT
Statistics
Matches: 25, Mismatches: 5, Indels: 5
0.71 0.14 0.14
Matches are distributed among these distances:
16 5 0.20
17 8 0.32
18 11 0.44
19 1 0.04
ACGTcount: A:0.49, C:0.10, G:0.04, T:0.37
Consensus pattern (18 bp):
ATCATAACTATTTAAACA
Found at i:8638 original size:362 final size:358
Alignment explanation
Indices: 7371--12571 Score: 3549
Period size: 362 Copynumber: 14.4 Consensus size: 358
7361 ATTTCATTTT
* * ** * * *
7371 TATTATTAAATTAGTATTATCCTAATCCAAATAAGCTTTTATGAA-A-AAATCAATTGTTTT-TA
1 TATTAATAAATTAATATTATTTTATTCCAAATAAGCTTGTATGAACAGAAA-CAATTGTTTTATG
* * * * * * * *
7433 ACAAAA-TAATGATCATAATAATTTGAGATAGATAATTATTCAAATAGTTATAACTATTTAAACT
65 ACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT
* * * * * ** *
7497 AGTTCGATAAACAAATTTAGTTTTTAAATC-TCT--TATTAATTTTCAAAATATTAATAAATAAG
130 TGTTCGATAAATAGATTTATTTTTTAAATCTTTTACTATTAATTTT-TTAATATTAATAAATTAG
** ** * * * *
7559 TATTATTTTATCCTGAATAATTTTGTAAGAACAAAAATAATTATTTTATGACAAAACAAAAGGTC
194 TATTATTTTATTTTGAATAAGCTTGTATGAA-TAAAACAATTGTTTTATGACAAAACAAAAGGTC
* * * * * * * * *** * *
7624 ATAATGTTTTAAAATAGATAATTGTTCAAATGGACATGACTATTTGAACCTATTTGGTGAACAGA
258 ATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAATAAACATA
* *** * * * *
7689 TTTATTTTTTAGGTTTCCCACCTATTAAATTTCAGAA
323 TTTATTTTTTA-ATTTTTTACTTATTAATTTTTAAAA
* * * * * * *
7726 TATTAATAAATTAGTATTATTTTATTCTAAATAAACTTGTAAGAATAGAAACAATTCTTTTATGG
1 TATTAATAAATTAATATTATTTTATTCCAAATAAGCTTGTATGAACAGAAACAATTGTTTTATGA
* * * * * * * * * *
7791 GAAAAAAAAAGATCATAACTATTTGAAATAAATAATTGTTTAAACAATCATAACTATTTAAAAAA
66 CAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTT--GAAC
** * * * * * * **** * * *
7856 TAAATTTGTTTATTGAGCTTGCTCAATAAACAAAT-TTATT--TTTTAAATCTTTTACTTATTAA
129 T-TGTTCGATAAAT-AGATT--T-ATTTTTTAAATCTT-TTACTATT-AATTTTTTA-ATATTAA
** *
7918 TAAATTAGTATTATTTTATTTTGAATAAATTTGTATGAATAAAAACAATTGGTTTATGACAAAAC
186 TAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAAT-AAAACAATTGTTTTATGACAAAAC
** * * * * * * *
7983 AAAATATTATAACT-ATTTGAAATAAATAATTGTTTAAATAGTTACAATTATTTGAA-TATGTT-
250 AAAAGGTCATAA-TGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACT-TGTTC
* * * * * * **
8045 AGA-ATATATATTTATTTTTTAAATTTCTACATAGTAATTTTTGGAA
313 A-ATAAACATATTTATTTTTTAATTTTTTACTTATTAATTTTTAAAA
* * * * * * *
8091 TATTAATAAATTTATATTATTTTATT-TAGAATAAGCTTGTATAAATATAAACAATTATTTAATG
1 TATTAATAAATTAATATTATTTTATTCCA-AATAAGCTTGTATGAACAGAAACAATTGTTTTATG
* * * * * *
8155 ACAAAACAAAAGGTCAAAACAATTTGAAATAGATAATTATTAAAATACTCATAACTATTTAAATT
65 ACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT
* * *
8220 TGTAT-GACAAATATATTCATTTTTTAAAT-TTCTTACTCATTAATTTTTTGAATATTAATAAAT
130 TGT-TCGATAAATAGATTTATTTTTTAAATCTT-TTACT-ATTAATTTTTT-AATATTAATAAAT
* * * * ** *
8283 TTGTGTTATTTTATTTTGAATAAGCCTGTATGAACTAATACAATTGTTTTATGATTAAACAAATG
191 TAGTATTATTTTATTTTGAATAAGCTTGTATGAA-TAAAACAATTGTTTTATGACAAAACAAAAG
* * * * *
8348 GTCATAAAGATTTGAAATCA-ATAATTATTTAAATAGTTATGATTATTTGAACTTGTTCAATAAA
255 GTCATAATGATTTGAAAT-AGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAATAAA
* * *
8412 CATATTCATTTTTATAATTTTTTATTTATTAATTGTTAAAA
319 CATATTTATTTTT-TAATTTTTTACTTATTAATTTTTAAAA
* * * * * *
8453 TATTAATAAATTAATAGTATTTCAATCCAAATAAGCTTGTATGAACAAAAATAATTATTTTATGA
1 TATTAATAAATTAATATTATTTTATTCCAAATAAGCTTGTATGAACAGAAACAATTGTTTTATGA
* * *
8518 CAAAGCAAAAGGTCATAACAATTTAAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTT
66 CAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTT
* * * * *
8583 ATTCGATAAATAAATTTTTTTTTTAAATCTTTTACATATTAATTATTTTAATATTAATGAATTTG
131 GTTCGATAAATAGATTTATTTTTTAAATCTTTTAC-TATTAATT-TTTTAATATTAATAAATTAG
* * *
8648 TATTACTTTA-TTTGAAATAAGCTTGTATGAATAGCAAA-TATTATTTTATGACAAAACAAAAGG
194 TATTATTTTATTTTG-AATAAGCTTGTATGAATA--AAACAATTGTTTTATGACAAAACAAAAGG
* * * *
8711 TTATAACGATTTAAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAATAAACA
256 TCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAATAAACA
* * * * * *
8776 GATTCATTTTTTAAATCTATTACTTATTAACTTTTAGAA
321 TATTTATTTTTT-AATTTTTTACTTATTAATTTTTAAAA
* * * * * *
8815 TTTTAACAAATTAGA-ATTATTTTATTTC-AATAAGCTTGTATGAACATAAAAAATTGTTTTGTG
1 TATTAATAAATTA-ATATTATTTTATTCCAAATAAGCTTGTATGAACAGAAACAATTGTTTTATG
* * * * * * * *
8878 ATAAAAACAAAAGGTTATAACTATTTAAAACAGATAATTGTTGAAACTA-TCATAAATATTTGCA
65 A-CAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAA-TAGTCATAACTATTTGAA
* * ** * * *
8942 -TTGGTCAAGCAACAGATTTA-TTTTTAAAT-TTGTTGCTTATTACTTTTTATAATATTAATAAA
128 CTTGTTCGATAAATAGATTTATTTTTTAAATCTT-TTAC-TATTAATTTTT-TAATATTAATAAA
* * *** * * * *
9004 TTAGCATTACTTTATTCCAAATAAGAC-TGTAT-AA-AAAATAATTATTTTATGATAAAACAAAT
190 TTAGTATTATTTTATTTTGAATAAG-CTTGTATGAATAAAACAATTGTTTTATGACAAAACAAAA
*** * * * * ** * * * * *
9066 GGTCATAGCAATTTGAAAAAAATAATTGTTCAAATACTTGTAAATAATTGAACTAGTTTAGTAAA
254 GGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAATAAA
* * *
9131 CAAATTTATTTTTTAA-TTCTTACTTATTAATTTTCAAAA
319 CATATTTATTTTTTAATTTTTTACTTATTAATTTTTAAAA
* * * * * *
9170 TATTAATGAATTAATATTATTTTATTCCAAACAAACTTATTTGAACAAAAAC-ATTAGTTTTATG
1 TATTAATAAATTAATATTATTTTATTCCAAATAAGCTTGTATGAACAGAAACAATT-GTTTTATG
* * *
9234 ACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTACAAATAGTCATAATTATTTGAACT
65 ACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT
* * * * *
9299 GGTTCGAAAAATAGAATTAGTTTTTTAAATCTCTTACTGATTAATTTTTGAAATATTAATAAATT
130 TGTTCGATAAATAGATTTA-TTTTTTAAATCTTTTACT-ATTAATTTTT-TAATATTAATAAATT
*** * * * **
9364 --TATTTATTTTATTCCAAATAAG-TTAGTAAGAATTGAAAAAAATTATTTTACAACAAAACAAA
192 AGTA-TTATTTTATTTTGAATAAGCTT-GTATGAA-T-AAAACAATTGTTTTATGACAAAACAAA
* * * * * * * *
9426 AGGTCATAATGATTTGAAATAAAGAATTGTTCATATAGCCTTAACTATTT-AAATTCGTTCAGTA
253 AGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTT-GTTCAATA
* * * * * *
9490 AACAAATTTATTTTTTAAATCTCTTAGTTATTAATTTTCATAA
317 AACATATTTATTTTTT-AATTTTTTACTTATTAATTTTTAAAA
* * * *** * *
9533 TATTATTACATTAGTATTATTTTATTATGAATAAGCTTGTATGAACAGAAAGAATTGCTTTATGA
1 TATTAATAAATTAATATTATTTTATTCCAAATAAGCTTGTATGAACAGAAACAATTGTTTTATGA
* * * * *
9598 CAGAACAAAAAGTTATAACAATTTGAAATATATAATTGTTCAAATAGTCATAACTATTTGAACTG
66 CAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTT
* * ** **
9663 GTTC-AGTAAACAAATTTATTTTTTAAATCTCCTACATATTAATTATTAAAATATTAATAAATTA
131 GTTCGA-TAAATAGATTTATTTTTTAAATCTTTTAC-TATTAATT-TTTTAATATTAATAAATTA
*** * * * * *
9727 GTATTATTTTATTCCAAATAGGCTTATATG-ATGAAAAAAATTATTTTATGA-AAAA-AAAAGTT
193 GTATTATTTTATTTTGAATAAGCTTGTATGAAT-AAAACAATTGTTTTATGACAAAACAAAAGGT
* * * * * * * *
9789 CATAACGATTTGAAATAGATTATTGTTCAAATGGCCATAATTATTTAAAC-TGATAT-GATAAAC
257 CATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTG-T-TCAATAAAC
* * * * * * *
9852 -TGAATTATGTTTTAAATCTATAACTTATCAATTTTTTAAA
320 AT-ATTTAT-TTTTTAATTTTTTACTTATTAATTTTTAAAA
* **** * * * *
9892 TATTAATAAAGTAATATTATTTTATTTTGGATAAGCTTTTATAAACGGAAGCAATTGTTTTATGA
1 TATTAATAAATTAATATTATTTTATTCCAAATAAGCTTGTATGAACAGAAACAATTGTTTTATGA
* * ** * * *
9957 TAAAATAAAAGGTCATAATGATTTTAAATAGATAATTGTTTAAATAGTCATAACTATTTGAATTT
66 CAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTT
* * * * * * *
10022 GTTTGAAAAACATATTTATTTTTTAAAATTTTTTGCTTATTAATTTTTTGAATGTTAATAAATTA
131 GTTCGATAAATAGATTTATTTTTT-AAATCTTTTAC-TATTAATTTTTT-AATATTAATAAATTA
* * * * * **
10087 GAATTATTTTATTTTGAATAAGCATGTATGAACTAAAACAACTATTTCAAAACTAAAA-AAAAGG
193 GTATTATTTTATTTTGAATAAGCTTGTATGAA-TAAAACAATTGTTTTATGAC-AAAACAAAAGG
* * * * * * * * ***
10151 CCAAAACGATTATTTAAAATAGATAA-TAGTTCAAATAGACATGATTATATGAACTTGTTTGGTA
256 TC-ATA--ATGATTTGAAATAGATAATTA-TTCAAATAGTCATAACTATTTGAACTTGTTCAATA
* * * ** *
10215 AATAGA-TTATTTTTTTAAGTCTTCAACTTATTAATTTTTAGAA
317 AACATATTTA-TTTTTTAA-TTTTTTACTTATTAATTTTTAAAA
* * * * * * *
10258 TATTAATAAATTAGTATTATTTTATTCCGAATAAACTTTTATAAATAGAAACAATTGCTTTATGA
1 TATTAATAAATTAATATTATTTTATTCCAAATAAGCTTGTATGAACAGAAACAATTGTTTTATGA
* * * ** * * * * *
10323 TAAAAAAAAAAGATCATAATGACTTGAAATAAATAATTATTCAAATGGTCATAACAATTTGAACT
66 -CAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT
* * * * * *
10388 TGCTCAATAAACATATTTATTTTTTAAATCTTTTACTTAATAA-TTTTAAAGTATTAATAAATTA
130 TGTTCGATAAATAGATTTATTTTTTAAATCTTTTAC-TATTAATTTTTTAA-TATTAATAAATTA
* * * * * * *
10452 ATGTTATTTTATTTTGAATGAGCTTGTTTGAGTAGAATA-AATTGATTTATGACAAAACAAATGG
193 GTATTATTTTATTTTGAATAAGCTTGTATGAATA-AA-ACAATTGTTTTATGACAAAACAAAAGG
* * * * *
10516 TCATAATGATTTGAAATAGATAATTACTCTAATAGTCATAATTATTTGAA-TGTGTT-TAGAAA-
256 TCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACT-TGTTCAATAAAC
* *
10578 ATATAT-TTTTTTAA-TTTTTACTTATTAATTTTTGAAA
320 ATATTTATTTTTTAATTTTTTACTTATTAATTTTTAAAA
* * * * *
10615 TATTAATAAATCT-ATATTATTTTATTCAAAATAAGCTTGCATCAATAGAACCAATTGTTTTATG
1 TATTAATAAAT-TAATATTATTTTATTCCAAATAAGCTTGTATGAACAGAAACAATTGTTTTATG
*** * * * * * * *
10679 ACAAAACAAAAGGTCATAATGTTTTGAAATAGATAATTTTTTAGATACTCATAATTATTTTAATT
65 ACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT
* * * * * ** * *
10744 TGTT-TAGTAAACATATTCATTTTTTTAATTCACTTACTCTTTAATTTTTGAAATATTAATAAAT
130 TGTTCGA-TAAATAGATTTA-TTTTTTAAATCTTTTACT-ATTAATTTTT-TAATATTAATAAAT
* ** * * *
10808 TAATATTATTTTATTTCAAATAAGCCTATATGAACTAAAACAATTGTTTTATTACAAAACAAAAG
191 TAGTATTATTTTATTTTGAATAAGCTTGTATGAA-TAAAACAATTGTTTTATGACAAAACAAAAG
* * ** * *
10873 GTCACAATGATTTGAAAAAAGATAATTATTCAAATAGTCATGGCTATTTGAACTTATTCGATAAA
255 GTCATAATGATTTG-AAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAATAAA
* * ** **
10938 CATATTTATTTTTTAAATCTTTTAGTTATTAATCATCCAAA
319 CATATTTATTTTTT-AATTTTTTACTTATTAATTTTTAAAA
* * * * * * *
10979 TATTAATAAATTAATATTATTTTAATCCTAATAAGCCTGTCTAAATAGAAACAATTGGTTTATGA
1 TATTAATAAATTAATATTATTTTATTCCAAATAAGCTTGTATGAACAGAAACAATTGTTTTATGA
* * * * * * * * *
11044 TATAACAAAAAGTCATAACAATTTAAAATAAATAATTGTTTAAATAATCATAACAATTTAAACTT
66 CAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTT
* * * *
11109 GTTCGATAAATAGATTTATTTTTTAAATCTTTTATTTATTAGTTGTCTTAATATTAGTAAATTTA
131 GTTCGATAAATAGATTTATTTTTTAAATCTTTTA-CTATTAATT-TTTTAATATTAATAAA-TTA
* * * * * *
11174 -TATTATTTTA-TTTGAAATAAGCTTATGTG-TTCAAAATAAATTATTTTAT-ATTAAAACAAAA
193 GTATTATTTTATTTTG-AATAAGCTTGTATGAAT-AAAA-CAATTGTTTTATGA-CAAAACAAAA
* * * * * * * *
11235 GTTTATAGTGATTTCAAATAGATAATTGTTCAAATAGTCATAATTATTTGAACTTATTCGATAAA
254 GGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAATAAA
* * *
11300 C----TTATTTTTTAAATCTTTTAATTATTAATTTTCAAAA
319 CATATTTATTTTTT-AATTTTTTACTTATTAATTTTTAAAA
* * * * * * * *
11337 TATTAATAACTTAGTATTATTTTATTTCGAATAAGCTTATATCAAC---TA-AATT-TTTTTTGA
1 TATTAATAAATTAATATTATTTTATTCCAAATAAGCTTGTATGAACAGAAACAATTGTTTTATGA
* * *
11397 CAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAGTCATGACTATTT-AATCT
66 CAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAA-CT
* * * * * * ** *
11461 AGTTTGGTAAATATATTTATTTTTTTAATTTTTTACTTATTAATTGTTGAAATATTAGTAAATTA
130 TGTTCGATAAATAGATTTATTTTTTAAATCTTTTAC-TATTAATT-TTTTAATATTAATAAATTA
**
11526 GTATTATTTTAATCCAAATAAGCTTAGATGAAAATAATTTTGTATGAATAGAAACAATTGTTTTA
193 GTATTA-TTT--T----AT----TT---TG--AATAAGCTTGTATGAATA-AAACAATTGTTTTA
* * * * * * *
11591 CGATAAAACAAAATGTCATAATGATTTGAAATTGGTAA-TAGTTCAAAT-GGCATGACTATTTGA
241 TGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTA-TTCAAATAGTCATAACTATTTGA
** * * * ** * **
11654 ACTTGTTCAGCAAATAAATTTATTTTTTAA--ATTT-CCAACTAATTTTTTGAA
305 ACTTGTTCAATAAACATATTTATTTTTTAATTTTTTACTTATTAATTTTTAAAA
* * * * * * *
11705 TATTAATAAATTAGTATTGTTTTATTTCAAATAAACTTGTATGAATAAAAATAATTGTTTTATGA
1 TATTAATAAATTAATATTATTTTATTCCAAATAAGCTTGTATGAACAGAAACAATTGTTTTATGA
* * * * * *
11770 TAAAACAAAAGATCATAACAATTTTGAAATAAATAATTATTTAAATAGTCATAACAATTTGAACT
66 CAAAACAAAAGGTCATAACAA-TTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT
* * * * *
11835 CGCTCGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAA-TTTTTAGAAATTTAATAAATT
130 TGTTCGATAAATAGATTTATTTTTTAAATCTTTTAC-TATTAATTTTTTA-ATA-TTAATAAATT
* * * *
11899 AGTATTATTTTATTCTAAATAAGCTTTTATGAACAAAAACAATTAG-TTTATGACAAAACAAAAG
192 AGTATTATTTTATTTTGAATAAGCTTGTATGAA-TAAAACAATT-GTTTTATGACAAAACAAAAG
* ** * * *
11963 GTTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACGTGTTCAAAAAAT
255 GTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAATAAAC
* * * **
12028 ATATTTATTTTTAAAATTTTTGCTTATTAATTTTTGGAA
320 ATATTTATTTTTTAATTTTTTACTTATTAATTTTTAAAA
* * * * *
12067 TATTAGTCAATTTATATTATTTTATT-CAGAATAAGCTTGTATGAATAGGAACAATTGTTTTATG
1 TATTAATAAATTAATATTATTTTATTCCA-AATAAGCTTGTATGAACAGAAACAATTGTTTTATG
12131 ACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT
65 ACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT
* * * **
12196 TGTT-TAGTAAATAGATTCATTTTTTAAATCTCTTACTCATTAAGTTTTGGAATATTAAT--A--
130 TGTTCGA-TAAATAGATTTATTTTTTAAATCTTTTACT-ATTAA-TTTTTTAATATTAATAAATT
** * * * **
12256 A--ATTATTTTATTTCAAATAAGCCTAG-ATGAACTAATACAATTGTTTTTTGATGAAACAAAAG
192 AGTATTATTTTATTTTGAATAAG-CTTGTATGAA-TAAAACAATTGTTTTATGACAAAACAAAAG
* * * * *** *
12318 GTCATAATGACTTGAAATAAATAATTATTCAAATAGTTATTACTATTTGAACTTGTTTGGTAAAT
255 GTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAATAAAC
* *
12383 ATATTTATTTTTTAAATCTTTTACTTTTACTTATTAATTGTCAAAA
320 ATATTTATTTTTT-AA----TT--TTTTACTTATTAATTTTTAAAA
* * * * *
12429 TATTAATAAATTAATATTA-TTTAATCCAAATAAACTTGTATGAACAAAAATAATTATTTTATGA
1 TATTAATAAATTAATATTATTTTATTCCAAATAAGCTTGTATGAACAGAAACAATTGTTTTATGA
* * * * ** *
12493 TAGAA-AAAA-GTAAAAATGATTTG-AATAAATAATTGTTCAAATAGTCATAACTATTTGAACTT
66 CAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTT
* *
12555 ATTCGGTAAATAGATTT
131 GTTCGATAAATAGATTT
12572 GAAATAAACT
Statistics
Matches: 3844, Mismatches: 814, Indels: 373
0.76 0.16 0.07
Matches are distributed among these distances:
352 5 0.00
353 111 0.03
354 11 0.00
355 244 0.06
356 124 0.03
357 204 0.05
358 349 0.09
359 310 0.08
360 258 0.07
361 330 0.09
362 643 0.17
363 279 0.07
364 161 0.04
365 196 0.05
366 151 0.04
367 188 0.05
368 75 0.02
369 59 0.02
370 5 0.00
371 4 0.00
372 16 0.00
373 31 0.01
374 88 0.02
375 2 0.00
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (358 bp):
TATTAATAAATTAATATTATTTTATTCCAAATAAGCTTGTATGAACAGAAACAATTGTTTTATGA
CAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTT
GTTCGATAAATAGATTTATTTTTTAAATCTTTTACTATTAATTTTTTAATATTAATAAATTAGTA
TTATTTTATTTTGAATAAGCTTGTATGAATAAAACAATTGTTTTATGACAAAACAAAAGGTCATA
ATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAATAAACATATTT
ATTTTTTAATTTTTTACTTATTAATTTTTAAAA
Found at i:9357 original size:182 final size:179
Alignment explanation
Indices: 7371--12559 Score: 3013
Period size: 181 Copynumber: 28.7 Consensus size: 179
7361 ATTTCATTTT
* * ** * * * * *
7371 TATTATTAAATTAGTATTATCCTAATCCAAATAAGCTTTTATGAA-AAAATCAATTGTTTT-TAA
1 TATTAATAAATTAATATTATTTTATTTCAAATAAGCTTGTATGAACAAAAAC-ATTGTTTTATGA
* * * ** * * * * *
7434 CAAAA-TAATGATCATAATAATTTGAGATAGATAATTATTCAAATAGTTATAACTATTTAAACTA
65 CAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTT
* **
7498 GTTCGATAAACA-AATTTAGTTTTTAAATC---T-CTTATTAATTTTCAAAA
130 GTTCGA-AAA-ATAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAA
* * ** * * *
7545 TATTAATAAA-TAAGTATTATTTTA-TCCTGAATAATTTTGTAAGAACAAAAATAATTATTTTAT
1 TATTAATAAATTAA-TATTATTTTATTTC-AAATAAGCTTGTATGAACAAAAA-CATTGTTTTAT
* * * * * *
7608 GACAAAACAAAAGGTCATAATGTTTTAAAATAGATAATTGTTCAAATGGACATGACTATTTGAAC
63 GACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAC
* * * *** * ** ** * * *
7673 CTATTTGGTGAACAGATTTATTTTTTAGGT-TTCCCACCTATTAA-ATTTCAGAA
128 TTGTTCGAAAAATA-ATTTATTTTTTAAATCTT-TTACTTATTAATTTTTGA-AA
* * * * * *
7726 TATTAATAAATTAGTATTATTTTA-TTCTAAATAAACTTGTAAGAATAGAAACAATTCTTTTATG
1 TATTAATAAATTAATATTATTTTATTTC-AAATAAGCTTGTATGAACAAAAAC-ATTGTTTTATG
** * * * * * * * *
7790 GGAAAAAAAAAGATCATAACTATTTGAAATAAATAATTGTTTAAACAATCATAACTATTT-AA-A
64 ACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT
*** * ** * * * **
7853 AAAT---AAATTTGTTTATTGAGCTTGCTCAATAAA-CAAATTTATTTTTTAAATCTTTT-ACT
129 TGTTCGAAAAATAATTTATT----TT--T---TAAATC--TTTTACTTATT-AAT-TTTTGAAA
* ** ** * *
7912 TATTAATAAATTAGTATTATTTTATTTTGAATAAATTTGTATGAATAAAAACAATTGGTTTATGA
1 TATTAATAAATTAATATTATTTTATTTCAAATAAGCTTGTATGAACAAAAAC-ATTGTTTTATGA
** * * * * * * *
7977 CAAAACAAAATATTATAACTATTTGAAATAAATAATTGTTTAAATAGTTACAATTATTTGAA-TA
65 CAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT-
* * * * * *
8041 TGTTAG-AATATATATTTATTTTTTAAAT-TTCTACATAGTAATTTTTGGAA
129 TGTTCGAAAAATA-ATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAA
* * * * * *
8091 TATTAATAAATTTATATTATTTTATTT-AGAATAAGCTTGTATAAATATAAACAATTATTTAATG
1 TATTAATAAATTAATATTATTTTATTTCA-AATAAGCTTGTATGAACAAAAAC-ATTGTTTTATG
* * * * * * *
8155 ACAAAACAAAAGGTCAAAACAATTTGAAATAGATAATTATTAAAATACTCATAACTATTTAAATT
64 ACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT
* * *
8220 TGTAT-GACAAATATATTCATTTTTTAAAT-TTCTTACTCATTAATTTTTTG-AA
129 TGT-TCGAAAAATA-ATTTATTTTTTAAATCTT-TTACTTATTAA-TTTTTGAAA
** * ** * * *
8272 TATTAATAAATTTGTGTTATTTTATTTTGAATAAGCCTGTATGAACTAATACAATTGTTTTATGA
1 TATTAATAAATTAATATTATTTTATTTCAAATAAGCTTGTATGAACAAAAAC-ATTGTTTTATGA
** * * * * * * *
8337 TTAAACAAATGGTCATAAAGATTTGAAATCA-ATAATTATTTAAATAGTTATGATTATTTGAACT
65 CAAAACAAAAGGTCATAACGATTTGAAAT-AGATAATTGTTCAAATAGTCATAACTATTTGAACT
* * * * * *
8401 TGTTC-AATAAACATATTCA-TTTTTATAATTTTTTATTTATTAATTGTTAAAA
129 TGTTCGAA-AAATA-ATTTATTTTTTA-AATCTTTTACTTATTAATTTTTGAAA
* * * * * *
8453 TATTAATAAATTAATAGTATTTCAATCCAAATAAGCTTGTATGAACAAAAATAATTATTTTATGA
1 TATTAATAAATTAATATTATTTTATTTCAAATAAGCTTGTATGAACAAAAA-CATTGTTTTATGA
* * * *
8518 CAAAGCAAAAGGTCATAACAATTTAAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTT
65 CAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTT
* * * * *
8583 ATTCGATAAATAAATTTTTTTTTTAAATCTTTTACATATTAATTATTT-TAA
130 GTTCGAAAAAT-AATTTATTTTTTAAATCTTTTACTTATTAATT-TTTGAAA
* ** * * * * * *
8634 TATTAATGAATTTGTATTACTTTATTTGAAATAAGCTTGTATGAATAGCAAATATTATTTTATGA
1 TATTAATAAATTAATATTATTTTATTTCAAATAAGCTTGTATGAACA-AAAACATTGTTTTATGA
* *
8699 CAAAACAAAAGGTTATAACGATTTAAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTT
65 CAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTT
* * * *
8764 GTTC-AATAAACAGATTCATTTTTTAAATCTATTACTTATTAACTTTT-AGAA
130 GTTCGAA-AAATA-ATTTATTTTTTAAATCTTTTACTTATTAATTTTTGA-AA
* * * *
8815 TTTTAACAAATTAGA-ATTATTTTATTTC-AATAAGCTTGTATGAACATAAAAAATTGTTTTGTG
1 TATTAATAAATTA-ATATTATTTTATTTCAAATAAGCTTGTATGAACA-AAAACATTGTTTTATG
* * * * * * * *
8878 ATAAAAACAAAAGGTTATAACTATTTAAAACAGATAATTGTTGAAACTA-TCATAAATATTTGCA
64 A-CAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAA-TAGTCATAACTATTTGAA
* * * * *
8942 -TTGGTC-AAGCAACAGATTTA-TTTTTAAAT-TTGTTGCTTATTACTTTTT-ATAA
127 CTTGTTCGAA-AAATA-ATTTATTTTTTAAATCTT-TTACTTATTAATTTTTGA-AA
** * * *
8994 TATTAATAAATTAGCATTACTTTATTCCAAATAAGAC-TGTAT-AA-AAAATA-ATTATTTTATG
1 TATTAATAAATTAATATTATTTTATTTCAAATAAG-CTTGTATGAACAAAA-ACATTGTTTTATG
* * * * * * * ** * *
9055 ATAAAACAAATGGTCATAGCAATTTGAAAAAAATAATTGTTCAAATACTTGTAAATAATTGAACT
64 ACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT
* * * * **
9120 AGTTTAGTAAACA-AATTTATTTTTT-AAT-TCTTACTTATTAATTTTCAAAA
129 TG-TTCG-AAAAATAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAA
* * * * * *
9170 TATTAATGAATTAATATTATTTTATTCCAAACAAACTTATTTGAACAAAAACATTAGTTTTATGA
1 TATTAATAAATTAATATTATTTTATTTCAAATAAGCTTGTATGAACAAAAACATT-GTTTTATGA
* * *
9235 CAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTACAAATAGTCATAATTATTTGAACTG
65 CAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTT
* * *
9300 GTTCGAAAAATAGAATTAGTTTTTTAAATCTCTTACTGATTAATTTTTGAAA
130 GTTCGAAAAATA-ATTTA-TTTTTTAAATCTTTTACTTATTAATTTTTGAAA
* * * * * * *
9352 TATTAATAAATTTAT-TTATTTTATTCCAAATAAG-TTAGTAAGAATTGAAAAAAATTATTTTAC
1 TATTAATAAATTAATATTATTTTATTTCAAATAAGCTT-GTATGAA--CAAAAACATTGTTTTAT
* * * * * * * *
9415 AACAAAACAAAAGGTCATAATGATTTGAAATAAAGAATTGTTCATATAGCCTTAACTATTT-AAA
63 GACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAC
* * * *
9479 TTCGTTCAGTAAACA-AATTTATTTTTTAAATCTCTTAGTTATTAA-TTTTCATAA
128 TT-GTTC-G-AAAAATAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGA-AA
* * * * *
9533 TATTATTACATTAGTATTATTTTATTAT-GAATAAGCTTGTATGAACAGAAAGA-ATTGCTTTAT
1 TATTAATAAATTAATATTATTTTATT-TCAAATAAGCTTGTATGAACA-AAA-ACATTGTTTTAT
* * * * *
9596 GACAGAACAAAAAGTTATAACAATTTGAAATATATAATTGTTCAAATAGTCATAACTATTTGAAC
63 GACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAC
* * ** * * *
9661 TGGTTCAGTAAACA-AATTTATTTTTTAAATCTCCTACATATTAATTATTAAAA
128 TTGTTC-G-AAAAATAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAA
* * * * ** * *
9714 TATTAATAAATTAGTATTATTTTATTCCAAATAGGCTTATATGATGAAAAAAATTATTTTATGA-
1 TATTAATAAATTAATATTATTTTATTTCAAATAAGCTTGTATGAACAAAAACATTGTTTTATGAC
* * * * * *
9778 AAAA-AAAAGTTCATAACGATTTGAAATAGATTATTGTTCAAATGGCCATAATTATTTAAAC-TG
66 AAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTG
* * * * * *
9841 ATAT-GATAAACTGAA-TTATGTTTTAAATCTATAACTTATCAATTTTTTAAA
131 -T-TCGA-AAAAT-AATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAA
* *** * * ** *
9892 TATTAATAAAGTAATATTATTTTATTTTGGATAAGCTTTTATAAACGGAAGCAATTGTTTTATGA
1 TATTAATAAATTAATATTATTTTATTTCAAATAAGCTTGTATGAACAAAAAC-ATTGTTTTATGA
* * * * * *
9957 TAAAATAAAAGGTCATAATGATTTTAAATAGATAATTGTTTAAATAGTCATAACTATTTGAATTT
65 CAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTT
* * * *
10022 GTTTGAAAAACATATTTATTTTTTAAAATTTTTTGCTTATTAATTTTTTG-AA
130 GTTCGAAAAATA-ATTTATTTTTT-AAATCTTTTACTTATTAA-TTTTTGAAA
* ** * * * * * **
10074 TGTTAATAAATTAGA-ATTATTTTATTTTGAATAAGCATGTATGAACTAAAACAACTATTTCAAA
1 TATTAATAAATTA-ATATTATTTTATTTCAAATAAGCTTGTATGAACAAAAAC-ATTGTTTTATG
* * * * * * * *
10138 ACTAAAA-AAAAGGCCAAAACGATTATTTAAAATAGATAATAGTTCAAATAGACATGATTATATG
64 AC-AAAACAAAAGGTCATAACG---ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTG
* ** * **
10202 AACTTGTTTGGTAAATAGA-TTATTTTTTTAAGTCTTCAACTTATTAATTTTT-AGAA
125 AACTTGTTCGAAAAATA-ATTTA-TTTTTTAAATCTTTTACTTATTAATTTTTGA-AA
* * * * * * * * *
10258 TATTAATAAATTAGTATTATTTTATTCCGAATAAACTTTTATAAATAGAAACAATTGCTTTATGA
1 TATTAATAAATTAATATTATTTTATTTCAAATAAGCTTGTATGAACAAAAAC-ATTGTTTTATGA
* * * * * * * * *
10323 TAAAAAAAAAAGATCATAATGACTTGAAATAAATAATTATTCAAATGGTCATAACAATTTGAACT
65 -CAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT
* * *
10388 TGCTC-AATAAACATATTTATTTTTTAAATCTTTTACTTAATAA-TTTT-AAA
129 TGTTCGAA-AAATA-ATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAA
* ** * * * * *
10438 GTATTAATAAATTAATGTTATTTTATTTTGAATGAGCTTGTTTGAGTAGAATAA-ATTGATTTAT
1 -TATTAATAAATTAATATTATTTTATTTCAAATAAGCTTGTATGA--ACAAAAACATTGTTTTAT
* * ** * *
10502 GACAAAACAAATGGTCATAATGATTTGAAATAGATAATTACTCTAATAGTCATAATTATTTGAA-
63 GACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAC
* *
10566 TGTGTT-TAGAAAAT-A--TATTTTTTTAAT-TTTTACTTATTAATTTTTGAAA
128 T-TGTTCGA-AAAATAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAA
* * * * *
10615 TATTAATAAATCT-ATATTATTTTA-TTCAAAATAAGCTTGCATCAATAGAACCAATTGTTTTAT
1 TATTAATAAAT-TAATATTATTTTATTTC-AAATAAGCTTGTATGAACAAAAAC-ATTGTTTTAT
* * * * * * * * *
10678 GACAAAACAAAAGGTCATAATGTTTTGAAATAGATAATTTTTTAGATACTCATAATTATTTTAAT
63 GACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAC
* * * * **
10743 TTGTTTAGTAAACAT-ATTCATTTTTTTAATTCACTTACTCT-TTAATTTTTGAAA
128 TTG-TTCG-AAAAATAATTTA-TTTTTTAAATCTTTTACT-TATTAATTTTTGAAA
* * * *
10797 TATTAATAAATTAATATTATTTTATTTCAAATAAGCCTATATGAACTAAAACAATTGTTTTATTA
1 TATTAATAAATTAATATTATTTTATTTCAAATAAGCTTGTATGAACAAAAAC-ATTGTTTTATGA
* * * * **
10862 CAAAACAAAAGGTCACAATGATTTGAAAAAAGATAATTATTCAAATAGTCATGGCTATTTGAACT
65 CAAAACAAAAGGTCATAACGATTTG-AAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT
* * ** **
10927 TATTCGATAAACAT-ATTTATTTTTTAAATCTTTTAGTTATTAATCATCCAAA
129 TGTTCGA-AAA-ATAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAA
* * * * * * * * *
10979 TATTAATAAATTAATATTATTTTAATCCTAATAAGCCTGTCTAAATAGAAACAATTGGTTTATGA
1 TATTAATAAATTAATATTATTTTATTTCAAATAAGCTTGTATGAACAAAAAC-ATTGTTTTATGA
* * * * * * * * * *
11044 TATAACAAAAAGTCATAACAATTTAAAATAAATAATTGTTTAAATAATCATAACAATTTAAACTT
65 CAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTT
* * *
11109 GTTCGATAAATAGATTTATTTTTTAAATCTTTTATTTATTAGTTGTCTT--AA
130 GTTCGAAAAATA-ATTTATTTTTTAAATCTTTTACTTATTAATT-T-TTGAAA
* * * * * ** * *
11160 TATTAGTAAATTTATATTATTTTATTTGAAATAAGCTTATGTGTTCAAAATAAATTATTTTAT-A
1 TATTAATAAATTAATATTATTTTATTTCAAATAAGCTTGTATGAACAAAA-ACATTGTTTTATGA
* * * ** * *
11224 TTAAAACAAAAGTTTATAGTGATTTCAAATAGATAATTGTTCAAATAGTCATAATTATTTGAACT
65 -CAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT
* * * * **
11289 TATTCG--ATA-AACTTATTTTTTAAATCTTTTAATTATTAATTTTCAAAA
129 TGTTCGAAAAATAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAA
* * * * * * *
11337 TATTAATAACTTAGTATTATTTTATTTCGAATAAGCTTATATCAAC--TAA-ATT-TTTTTTGAC
1 TATTAATAAATTAATATTATTTTATTTCAAATAAGCTTGTATGAACAAAAACATTGTTTTATGAC
* * *
11398 AAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAGTCATGACTATTT-AATCTA
66 AAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAA-CTT
* ** * * *
11462 GTTTGGTAAATATATTTATTTTTTTAATTTTTTACTTATTAATTGTTGAAA
130 GTTCGAAAAATA-ATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAA
* * * * * *
11513 TATTAGTAAATTAGTATTATTTTAATCCAAATAAGCTTAG-ATG-A-AAATA-ATT-TTGTATGA
1 TATTAATAAATTAATATTATTTTATTTCAAATAAGCTT-GTATGAACAAAAACATTGTTTTATG-
* ** * * * * * *
11573 ATAGAAAC-AATTGT-TTTACGA--T-AAA-ACA-AAATG-TCATAAT-GAT-TTGAA--ATTGG
64 ACA-AAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCA-AATAG-TCAT-AACTATTTG
* * ** ** * * *
11626 TAA-TAGTTC-AAATGGCATGACTATTTGAACTTGTTCAGCAAATAAATTTATTTTTTAAATTTC
125 -AACTTGTTCGAAA---AAT-A--ATTT--A-TT-TT--TTAAAT-CTTTTACTTATT-AATTTT
**
11689 CAACTAA
175 TGA--AA
* * * * * *
11696 TTTTTTGAATATTAATAAATTAGTATTGTTTTATTTCAAATAAACTTGTATGAATAAAAATAATT
1 -----T-ATTA---ATAAATTAATATTATTTTATTTCAAATAAGCTTGTATGAACAAAAA-CATT
* * * * * * *
11761 GTTTTATGATAAAACAAAAGATCATAACAATTTTGAAATAAATAATTATTTAAATAGTCATAACA
56 GTTTTATGACAAAACAAAAGGTCATAACGA-TTTGAAATAGATAATTGTTCAAATAGTCATAACT
* * ** *
11826 ATTTGAACTCGCTCGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTAGAAA
120 ATTTGAACTTGTTCGAAAAATA-ATTTATTTTTTAAATCTTTTACTTATTAATTTTT-GAAA
* *
11888 T-TTAATAAATTAGTATTATTTTA-TTCTAAATAAGCTTTTATGAACAAAAACAATTAG-TTTAT
1 TATTAATAAATTAATATTATTTTATTTC-AAATAAGCTTGTATGAACAAAAAC-ATT-GTTTTAT
* * *
11950 GACAAAACAAAAGGTTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAAC
63 GACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAC
* * * * *
12015 GTGTTCAAAAAATATATTTATTTTTAAAAT-TTTTGCTTATTAATTTTTGGAA
128 TTGTTCGAAAAATA-ATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAA
* * * * **
12067 TATTAGTCAATTTATATTATTTTA-TTCAGAATAAGCTTGTATGAATAGGAACAATTGTTTTATG
1 TATTAATAAATTAATATTATTTTATTTCA-AATAAGCTTGTATGAACAAAAAC-ATTGTTTTATG
*
12131 ACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT
64 ACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT
* * * * * * *
12196 TGTT-TAGTAAATAGATTCATTTTTTAAATCTCTTACTCATTAAGTTTTGGAA
129 TGTTCGA-AAAATA-ATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAA
* * * *
12248 TA-T--T-AA-TAA-ATTATTTTATTTCAAATAAGCCTAG-ATGAACTAATACAATTGTTTTTTG
1 TATTAATAAATTAATATTATTTTATTTCAAATAAG-CTTGTATGAACAAAAAC-ATTGTTTTATG
** * * * * * *
12306 ATGAAACAAAAGGTCATAATGACTTGAAATAAATAATTATTCAAATAGTTATTACTATTTGAACT
64 ACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT
* ** *
12371 TGTTTGGTAAATATATTTATTTTTTAAATCTTTTACTT-TTACTTATTAATTGTCAAAA
129 TGTTCGAAAAATA-ATTTATTTTTTAAATCTTTTACTTATTA---ATT--TT-T-GAAA
* * * * *
12429 TATTAATAAATTAATATTA-TTTAATCCAAATAAACTTGTATGAACAAAAATAATTATTTTATGA
1 TATTAATAAATTAATATTATTTTATTTCAAATAAGCTTGTATGAACAAAAA-CATTGTTTTATGA
* * * * * *
12493 TAGAA-AAAA-GTAAAAATGATTTG-AATAAATAATTGTTCAAATAGTCATAACTATTTGAACTT
65 CAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTT
*
12555 ATTCG
130 GTTCG
12560 GTAAATAGAT
Statistics
Matches: 3883, Mismatches: 879, Indels: 497
0.74 0.17 0.09
Matches are distributed among these distances:
168 1 0.00
169 8 0.00
170 5 0.00
171 14 0.00
172 63 0.02
173 17 0.00
174 39 0.01
175 160 0.04
176 309 0.08
177 180 0.05
178 150 0.04
179 266 0.07
180 371 0.10
181 1169 0.30
182 554 0.14
183 117 0.03
184 87 0.02
185 79 0.02
186 144 0.04
187 12 0.00
188 5 0.00
189 3 0.00
190 3 0.00
191 7 0.00
192 33 0.01
193 6 0.00
194 13 0.00
195 8 0.00
196 9 0.00
197 12 0.00
198 2 0.00
199 1 0.00
200 1 0.00
201 7 0.00
202 3 0.00
203 10 0.00
204 6 0.00
205 8 0.00
206 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (179 bp):
TATTAATAAATTAATATTATTTTATTTCAAATAAGCTTGTATGAACAAAAACATTGTTTTATGAC
AAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTG
TTCGAAAAATAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAA
Found at i:11103 original size:18 final size:18
Alignment explanation
Indices: 11056--11105 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
11046 TAACAAAAAG
11056 TCATAACAATTTAAAATAA
1 TCATAACAATTT-AAATAA
***
11075 --ATAATTGTTTAAATAA
1 TCATAACAATTTAAATAA
11091 TCATAACAATTTAAA
1 TCATAACAATTTAAA
11106 CTTGTTCGAT
Statistics
Matches: 23, Mismatches: 6, Indels: 5
0.68 0.18 0.15
Matches are distributed among these distances:
16 6 0.26
17 7 0.30
18 10 0.43
ACGTcount: A:0.54, C:0.08, G:0.02, T:0.36
Consensus pattern (18 bp):
TCATAACAATTTAAATAA
Found at i:13785 original size:29 final size:28
Alignment explanation
Indices: 13752--13852 Score: 88
Period size: 27 Copynumber: 3.6 Consensus size: 28
13742 ATAATATGGA
13752 ATTATTATCTTATAATATAATGTAAATAT
1 ATTATTAT-TTATAATATAATGTAAATAT
*
13781 ATTA-TATTTATAA-ACTATAT-TATATAT
1 ATTATTATTTATAATA-TA-ATGTAAATAT
* *
13808 AAGTAATATTTATAATAT--TGTAAATA-
1 -ATTATTATTTATAATATAATGTAAATAT
13834 ATTATTATTTAATAATATA
1 ATTATTATTT-ATAATATA
13853 TTAATTTCTA
Statistics
Matches: 59, Mismatches: 5, Indels: 18
0.72 0.06 0.22
Matches are distributed among these distances:
25 8 0.14
26 9 0.15
27 19 0.32
28 8 0.14
29 14 0.24
30 1 0.02
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.49
Consensus pattern (28 bp):
ATTATTATTTATAATATAATGTAAATAT
Found at i:13825 original size:25 final size:26
Alignment explanation
Indices: 13797--13851 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 26
13787 TTTATAAACT
*
13797 ATATTATATATAAGTAATATTT-ATA
1 ATATTATAAATAAGTAATATTTAATA
* * *
13822 ATATTGTAAATAATTATTATTTAATA
1 ATATTATAAATAAGTAATATTTAATA
13848 ATAT
1 ATAT
13852 ATTAATTTCT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (26 bp):
ATATTATAAATAAGTAATATTTAATA
Found at i:13833 original size:18 final size:19
Alignment explanation
Indices: 13766--13838 Score: 61
Period size: 18 Copynumber: 4.1 Consensus size: 19
13756 TTATCTTATA
13766 ATATA-ATGTAAATATATT
1 ATATATATGTAAATATATT
*
13784 ATAT-T-TATAAACTATATT
1 ATATATATGTAAA-TATATT
*
13802 ATATATAAGT-AATAT-TT
1 ATATATATGTAAATATATT
13819 ATA-ATATTGTAAATA-ATT
1 ATATATA-TGTAAATATATT
13837 AT
1 AT
13839 TATTTAATAA
Statistics
Matches: 44, Mismatches: 4, Indels: 14
0.71 0.06 0.23
Matches are distributed among these distances:
16 3 0.07
17 12 0.27
18 25 0.57
19 3 0.07
20 1 0.02
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.47
Consensus pattern (19 bp):
ATATATATGTAAATATATT
Found at i:13870 original size:21 final size:20
Alignment explanation
Indices: 13844--13896 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 20
13834 ATTATTATTT
*
13844 AATAATATATTAATTTCTAA
1 AATAATATATTAATTTATAA
*
13864 ATATAATA-ATATAATTTATTA
1 A-ATAATATAT-TAATTTATAA
13885 AATAAT-TATTAA
1 AATAATATATTAA
13897 ATAATATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
19 3 0.11
20 10 0.36
21 15 0.54
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
AATAATATATTAATTTATAA
Found at i:14609 original size:12 final size:12
Alignment explanation
Indices: 14517--14609 Score: 50
Period size: 12 Copynumber: 7.7 Consensus size: 12
14507 TATATCAAAT
*
14517 TAATATAATTAT
1 TAATATAATTAA
*
14529 TAATGTAATTAA
1 TAATATAATTAA
*
14541 TAATGACAATATTTTAA
1 TAAT----ATA-ATTAA
*
14558 TAATAT-ATTTA
1 TAATATAATTAA
*
14569 T-AT-TAGTTAA
1 TAATATAATTAA
*
14579 TATTATAATTAA
1 TAATATAATTAA
*
14591 TTA-ATAATTAA
1 TAATATAATTAA
14602 TAATATAA
1 TAATATAA
14610 ATATTATTGT
Statistics
Matches: 59, Mismatches: 13, Indels: 18
0.66 0.14 0.20
Matches are distributed among these distances:
9 1 0.02
10 6 0.10
11 15 0.25
12 25 0.42
13 2 0.03
16 2 0.03
17 8 0.14
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.46
Consensus pattern (12 bp):
TAATATAATTAA
Found at i:15173 original size:22 final size:21
Alignment explanation
Indices: 15121--15185 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 21
15111 TTATCAAATT
*
15121 ATTATTATTATAATATTATT-
1 ATTAATATTATAATATTATTA
* *
15141 TTTAAAGATTATAATTATTATTA
1 ATT-AATATTATAA-TATTATTA
15164 ATTAATATTATAATATTTATTA
1 ATTAATATTATAATA-TTATTA
15186 TACTTTATGA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
20 2 0.06
21 10 0.28
22 22 0.61
23 2 0.06
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (21 bp):
ATTAATATTATAATATTATTA
Found at i:15238 original size:14 final size:13
Alignment explanation
Indices: 15196--15241 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 13
15186 TACTTTATGA
15196 TAATATAAATTAAT
1 TAAT-TAAATTAAT
*
15210 TAATTAACTTAAAT
1 TAATTAAATT-AAT
15224 TAATTAAATATAAT
1 TAATTAAAT-TAAT
15238 TAAT
1 TAAT
15242 AATTATTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 5 0.18
14 22 0.79
15 1 0.04
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.43
Consensus pattern (13 bp):
TAATTAAATTAAT
Found at i:15279 original size:18 final size:18
Alignment explanation
Indices: 15224--15281 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
15214 TAACTTAAAT
*
15224 TAATTAAAT-ATAATTAA
1 TAATTATATGATAATTAA
15241 TAATTAT-TCAGATAA-TAA
1 TAATTATAT--GATAATTAA
*
15259 TAATTATATGATAATTTA
1 TAATTATATGATAATTAA
15277 TAATT
1 TAATT
15282 TCTATTATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
16 1 0.03
17 11 0.32
18 17 0.50
19 5 0.15
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (18 bp):
TAATTATATGATAATTAA
Found at i:15845 original size:13 final size:13
Alignment explanation
Indices: 15827--15851 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15817 TATATAACTT
15827 TATTTAAATTTTC
1 TATTTAAATTTTC
15840 TATTTAAATTTT
1 TATTTAAATTTT
15852 AATATTATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (13 bp):
TATTTAAATTTTC
Found at i:16223 original size:15 final size:15
Alignment explanation
Indices: 16199--16234 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
16189 TCTAGGTAAA
16199 ATAT-ATTATAATAC
1 ATATAATTATAATAC
16213 ATATAATTATAATAC
1 ATATAATTATAATAC
*
16228 ATGTAAT
1 ATATAAT
16235 AACCTAAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 4 0.20
15 16 0.80
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.42
Consensus pattern (15 bp):
ATATAATTATAATAC
Found at i:16443 original size:31 final size:29
Alignment explanation
Indices: 16371--16448 Score: 79
Period size: 31 Copynumber: 2.7 Consensus size: 29
16361 ATTAATTCAA
* **
16371 ACAATTAATTA-AATAAT-TAAATTATTT
1 ACAAGTAATTATAATAATATAAAAAATTT
*
16398 ACAAGTTATTATAATAATATAAAAAATTT
1 ACAAGTAATTATAATAATATAAAAAATTT
*
16427 AACAACGTAATTATAATTATAT
1 -ACAA-GTAATTATAATAATAT
16449 GTAATTATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
27 9 0.22
28 6 0.15
29 8 0.20
30 4 0.10
31 14 0.34
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.40
Consensus pattern (29 bp):
ACAAGTAATTATAATAATATAAAAAATTT
Found at i:16454 original size:16 final size:15
Alignment explanation
Indices: 16433--16475 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
16423 ATTTAACAAC
16433 GTAATTATAATTATAT
1 GTAATTATAATTA-AT
*
16449 GTAATTATAA-CAAT
1 GTAATTATAATTAAT
*
16463 ATAATTATAATTA
1 GTAATTATAATTA
16476 CAATTTCTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
14 11 0.48
15 2 0.09
16 10 0.43
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (15 bp):
GTAATTATAATTAAT
Found at i:16974 original size:27 final size:31
Alignment explanation
Indices: 16923--17000 Score: 94
Period size: 30 Copynumber: 2.6 Consensus size: 31
16913 TATTTCAAAT
*
16923 TAAATTTAAATTTATATAATATTATAA-TA-TC
1 TAAATATAAATTTATAT--TATTATAATTATTC
16954 T-AATAT-AATTTATATTATTATAATTATTC
1 TAAATATAAATTTATATTATTATAATTATTC
16983 TAAATATAAATTT-TATTA
1 TAAATATAAATTTATATTA
17001 ATACTATAGT
Statistics
Matches: 42, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
27 8 0.19
28 2 0.05
29 12 0.29
30 14 0.33
31 6 0.14
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (31 bp):
TAAATATAAATTTATATTATTATAATTATTC
Found at i:16991 original size:30 final size:28
Alignment explanation
Indices: 16929--17000 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 28
16919 AAATTAAATT
16929 TAAATTTATATAATATTATAATATCTAATA
1 TAAATTTATAT--TATTATAATATCTAATA
16959 T-AATTTATATTATTATAATTATTCTAAATA
1 TAAATTTATATTATTATAA-TA-TCT-AATA
16989 TAAATTT-TATTA
1 TAAATTTATATTA
17001 ATACTATAGT
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
27 8 0.21
28 2 0.05
29 12 0.32
30 11 0.29
31 5 0.13
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (28 bp):
TAAATTTATATTATTATAATATCTAATA
Found at i:17058 original size:24 final size:27
Alignment explanation
Indices: 17031--17084 Score: 69
Period size: 28 Copynumber: 2.1 Consensus size: 27
17021 TTAAATTGTC
17031 ATAATAA-A-TTACT-ATTAATAAATA
1 ATAATAATATTTACTAATTAATAAATA
*
17055 ATAATAATATTTATTAAATTAATAAATA
1 ATAATAATATTTACT-AATTAATAAATA
17083 AT
1 AT
17085 TTATTAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 7 0.28
25 1 0.04
26 4 0.16
28 13 0.52
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (27 bp):
ATAATAATATTTACTAATTAATAAATA
Found at i:17141 original size:19 final size:17
Alignment explanation
Indices: 17108--17160 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 17
17098 TTAAAATAAT
* *
17108 TTTAATTTTAATATTATA
1 TTTAATTATATTATT-TA
17126 GTTTAATTATATTATTTA
1 -TTTAATTATATTATTTA
* *
17144 ATTAATAATATTATTTA
1 TTTAATTATATTATTTA
17161 AATTAGTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
17 15 0.50
18 2 0.07
19 13 0.43
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (17 bp):
TTTAATTATATTATTTA
Found at i:17154 original size:17 final size:17
Alignment explanation
Indices: 17128--17161 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
17118 ATATTATAGT
*
17128 TTAATTATATTATTTAA
1 TTAATAATATTATTTAA
17145 TTAATAATATTATTTAA
1 TTAATAATATTATTTAA
17162 ATTAGTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TTAATAATATTATTTAA
Found at i:17161 original size:30 final size:31
Alignment explanation
Indices: 17130--17192 Score: 78
Period size: 33 Copynumber: 2.1 Consensus size: 31
17120 ATTATAGTTT
*
17130 AATTA-TATTATTTAATTAATAATATTATTTA
1 AATTAGTATTATTTAAATAA-AATATTATTTA
17161 AATTAGTTATTATTTAAATAAAATA--ATTTA
1 AATTAG-TATTATTTAAATAAAATATTATTTA
17191 AA
1 AA
17193 AAATTGTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
30 7 0.24
31 5 0.17
32 4 0.14
33 13 0.45
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (31 bp):
AATTAGTATTATTTAAATAAAATATTATTTA
Found at i:17834 original size:178 final size:178
Alignment explanation
Indices: 17413--17847 Score: 414
Period size: 178 Copynumber: 2.4 Consensus size: 178
17403 TAATGATTTT
* * * * *
17413 AAATAGATAATTGTTCAAATAGTCAAAAATATTTAAACTTGTTCGGTAAATAGATTT-TTTGTAA
1 AAATAGATAATTGTTCAAATAGTCATAACTATTTAAACTGGTTCGGTAAACAGATTTATTTTTAA
* * * * * * * *
17477 TTTCTTACTTAATAATTTTTTGAATGTTAATAAATTAATATTACTTTATTTTGAATAAGCATGTA
66 ATCCTTACTTAATAATGTTTAGAATATTAATAAATTAATATTA-TTTACTCTAAATAAGCATGTA
* * * * * ** ** *
17542 TGAGTTGAATCAATTATTTTATGACTAAACAAAGGGTCAAAATGATTTG
130 TGAATAGAATCAAATATTTTAAGACAAAACAAAGAATCAAAACAATTGG
* * * * ** * *
17591 AAATAGATAATTGTTCTAATAGTCTTAACTATTTGAACTGATTTAGCAAACATATTTATTTTTTA
1 AAATAGATAATTGTTCAAATAGTCATAACTATTTAAACTGGTTCGGTAAACAGATTTA-TTTTTA
* * * *
17656 AATCCTTACTTATTAATGTTTAGAATATTATTAATTTAGCA-ATT-TTTACTCTAAATAAGCTTG
65 AATCCTTACTTAATAATGTTTAGAATATTAATAAATTA--ATATTATTTACTCTAAATAAGCATG
* * *
17719 T-TGAATAGAAATTAAATGTTTTAAGACAAAACAAA-AATCATAACAATTGG
128 TATGAATAG-AATCAAATATTTTAAGACAAAACAAAGAATCAAAACAATTGG
*
17769 AAATAGATAATTGTTCAAATAGTCATAACTATTTAAACTGGTTCGGTAAAGAGATTTAGTTTTTA
1 AAATAGATAATTGTTCAAATAGTCATAACTATTTAAACTGGTTCGGTAAACAGATTTA-TTTTTA
17834 AATCTCTTA-TTAAT
65 AATC-CTTACTTAAT
17848 TTTCAAAATA
Statistics
Matches: 202, Mismatches: 49, Indels: 12
0.77 0.19 0.05
Matches are distributed among these distances:
178 122 0.60
179 41 0.20
180 35 0.17
181 3 0.01
182 1 0.00
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.41
Consensus pattern (178 bp):
AAATAGATAATTGTTCAAATAGTCATAACTATTTAAACTGGTTCGGTAAACAGATTTATTTTTAA
ATCCTTACTTAATAATGTTTAGAATATTAATAAATTAATATTATTTACTCTAAATAAGCATGTAT
GAATAGAATCAAATATTTTAAGACAAAACAAAGAATCAAAACAATTGG
Found at i:18415 original size:19 final size:16
Alignment explanation
Indices: 18391--18470 Score: 57
Period size: 15 Copynumber: 5.2 Consensus size: 16
18381 TATAATTTAG
18391 ATATA-AATTAATTAATA
1 ATATATAATT-ATT-ATA
18408 ATATATAATTATTATA
1 ATATATAATTATTATA
18424 ATAT-TAATTAGTTA-A
1 ATATATAATTA-TTATA
* *
18439 ATTTAT-ACTA-TATA
1 ATATATAATTATTATA
*
18453 A-A-ATTATTATTATA
1 ATATATAATTATTATA
18467 ATAT
1 ATAT
18471 TTTAAATTAT
Statistics
Matches: 51, Mismatches: 4, Indels: 17
0.71 0.06 0.24
Matches are distributed among these distances:
12 2 0.04
13 5 0.10
14 7 0.14
15 14 0.27
16 11 0.22
17 8 0.16
18 4 0.08
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (16 bp):
ATATATAATTATTATA
Found at i:18418 original size:14 final size:14
Alignment explanation
Indices: 18391--18471 Score: 55
Period size: 14 Copynumber: 5.7 Consensus size: 14
18381 TATAATTTAG
18391 ATATAA-ATTAATT
1 ATATAATATTAATT
18404 A-ATAATATATAATT
1 ATATAATAT-TAATT
18418 ATTATAATATTAATT
1 A-TATAATATTAATT
*
18433 AGT-TAA-ATTTATACT
1 A-TATAATA-TTA-ATT
*
18448 ATATAAAATT-ATT
1 ATATAATATTAATT
18461 ATTATAATATT
1 A-TATAATATT
18472 TTAAATTATA
Statistics
Matches: 55, Mismatches: 4, Indels: 17
0.72 0.05 0.22
Matches are distributed among these distances:
12 4 0.07
13 7 0.13
14 21 0.38
15 15 0.27
16 8 0.15
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (14 bp):
ATATAATATTAATT
Found at i:18466 original size:21 final size:21
Alignment explanation
Indices: 18441--18488 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
18431 TTAGTTAAAT
* *
18441 TTATACTATATAAAATTATTA
1 TTATAATATATAAAATTATAA
* *
18462 TTATAATATTTTAAATTATAA
1 TTATAATATATAAAATTATAA
18483 TTATAA
1 TTATAA
18489 ATCTTTTGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
TTATAATATATAAAATTATAA
Found at i:19407 original size:16 final size:16
Alignment explanation
Indices: 19367--19408 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
19357 ATTTTATTTA
19367 ATTAATAAT-TAAATT
1 ATTAATAATATAAATT
*
19382 ATT-ATAAATATCAATT
1 ATTAAT-AATATAAATT
19398 ATTAATAATAT
1 ATTAATAATAT
19409 TTTATTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
14 2 0.09
15 6 0.26
16 13 0.57
17 2 0.09
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
ATTAATAATATAAATT
Found at i:20559 original size:176 final size:176
Alignment explanation
Indices: 19958--20668 Score: 549
Period size: 180 Copynumber: 4.0 Consensus size: 176
19948 TTAATTATAT
* * * * * *
19958 AAATATTAATAAAGTAATATTATTTTATTTTGGATAAGCTTT-TATGAA-ATGAAACAATTATTT
1 AAATATTAATAAATTAGTGTTATTTTATTTCGAATAAG-TTTGTATGAATA-G-AA-AATTGTTT
* ** * * * *
20021 TACGATGAAACAAAAGGTTATAATGATTTTAAA-ATGATAATTGTTTAAATAATCATAACTATTT
62 TATGACAAAAC-AAAGATCATAATGATTTGAAATA-GATAATTATTTAAATAATCATAACTATTT
* * * * *
20085 GAACTTGTTTAG-TAAACAAATTTATTTTTTAATTCCTTGCTTATTAATTTTCT
125 GAA-TTGGTTCGATAAACAAATTTATTTTTTAAAT-CTTACTTATTAATTTTCA
* * * ** *
20138 AAATGTTAATAAAATAGTGTTATTTTATTTCGAACAAGCATGTATGAACT-GAACAATTATTTTA
1 AAATATTAATAAATTAGTGTTATTTTATTTCGAATAAGTTTGTATGAA-TAGAA-AATTGTTTTA
* ** * * *
20202 AGATTAAACAAAAGGTCAGAATGATTTGAAATAGATAATTA-TTATAATAATCTTAACTATTTGA
64 TGACAAAAC-AAAGATCATAATGATTTGAAATAGATAATTATTTA-AATAATCATAACTATTTGA
* * * * * * *
20266 ACTAGTTCAACAAATACATTTATTTTTTAAATCTCTTACTTATTAATTTTTA
127 ATTGGTTCGATAAACAAATTTATTTTTTAAA--TCTTACTTATTAATTTTCA
* * ** *** * * *
20318 GAATATTATTAGTTTAGCAATATTTTACTTCGAATAAGTTTGTATGGACAGAAACAATTGTTTTA
1 AAATATTAATAAATTAGTGTTATTTTATTTCGAATAAGTTTGTATGAATAG-AA-AATTGTTTTA
** * * * *
20383 TGACAAAACAAAGATCATACCGATTTGAGATAGATAATTATTCAAATAGTCATAATTATTTGAAT
64 TGACAAAACAAAGATCATAATGATTTGAAATAGATAATTATTTAAATAATCATAACTATTTGAAT
* * *
20448 TGGTTCGATAAACAGATATAGTTTTTAAATC-T-CTTATTAATTTTCA
129 TGGTTCGATAAACAAATTTATTTTTTAAATCTTACTTATTAATTTTCA
* *
20494 AAATATTAATAAATTAGTGTTATTTTATTTTGAATAATTTTGTATGAATAGAAATAGTTGTTTTA
1 AAATATTAATAAATTAGTGTTATTTTATTTCGAATAAGTTTGTATGAATAGAAA-A-TTGTTTTA
* * * * *
20559 TTACAAAACAAAGGATCATAATGATTTGAAATAAATAATTCTTTAAATAGTCATAATTATTTGAA
64 TGACAAAACAAA-GATCATAATGATTTGAAATAGATAATTATTTAAATAATCATAACTATTTGAA
* *** *
20624 CTCACTC-AGTAAACAAATTTATTTTTTAAATATTTTACTTATTAA
128 TTGGTTCGA-TAAACAAATTTATTTTTT-AA-ATCTTACTTATTAA
20669 ATATATAATT
Statistics
Matches: 420, Mismatches: 92, Indels: 37
0.77 0.17 0.07
Matches are distributed among these distances:
174 1 0.00
175 3 0.01
176 72 0.17
177 65 0.15
178 10 0.02
179 85 0.20
180 155 0.37
181 29 0.07
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (176 bp):
AAATATTAATAAATTAGTGTTATTTTATTTCGAATAAGTTTGTATGAATAGAAAATTGTTTTATG
ACAAAACAAAGATCATAATGATTTGAAATAGATAATTATTTAAATAATCATAACTATTTGAATTG
GTTCGATAAACAAATTTATTTTTTAAATCTTACTTATTAATTTTCA
Found at i:20772 original size:18 final size:17
Alignment explanation
Indices: 20755--20807 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
20745 TAATTAAAAT
20755 TAATTATTAATATTAAA
1 TAATTATTAATATTAAA
* * *
20772 TAAATAGTAATTATTATA
1 TAATTATTAA-TATTAAA
20790 TAATTATT-ATATATAAA
1 TAATTATTAATAT-TAAA
20807 T
1 T
20808 TGTTAGCATA
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
16 3 0.11
17 13 0.46
18 12 0.43
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (17 bp):
TAATTATTAATATTAAA
Found at i:21730 original size:181 final size:179
Alignment explanation
Indices: 21237--22477 Score: 1068
Period size: 181 Copynumber: 6.9 Consensus size: 179
21227 TTAATTTAGT
* * * * * *
21237 ACGATTTGAAATAAATAAAATGTTCAAA-ATGTTATAACTAATTGAACTAATAT-GGTAAACAGA
1 ACGATTTGAAATAGAT-AATTGTTCAAATA-GTCATAACTATTTGAACTGAT-TCGATAAACAGA
* * * *
21300 TTTATTTATTAAA--TCT-CTTAATAATTTTTGAAATATTAATAAATTAATATTATTTTATTTCG
63 TTTATTTTTTAAATCTCTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTT-G
* * * * * *
21362 AAGAAACTTATATGAACAAAAACATTTGTTTTATGATAAAACAAAAGCTCATA
127 AATAAGCTTGTATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATA
* * * * *
21415 ACGATTTGAAATAGATAATTATT-AATATAGCCTTAACTATTTGAATTGGTTCGATAAACA-ATT
1 ACGATTTGAAATAGATAATTGTTCAA-ATAGTCATAACTATTTGAACTGATTCGATAAACAGA-T
* * * * *
21478 TTATTTTTTTTAAATCTATTAGTTATTAA-ATTTCATAATATTACTAGATTAGTATTATTTTATT
64 TTA--TTTTTTAAATCT-CTACTTATTAATTTTTCA-AATATTAATAAATTAGTATTATTTTA-T
* * * * * *
21542 TTGAATAGGCTTGTATGAAGATAAATAATTGTTTTATGACAAAATAAAAGGTTATA
124 TTGAATAAGCTTGTATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATA
* * *
21598 ATGATTGGAAATATATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGATAAACAGATTT
1 ACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGATAAACAGATTT
*
21663 ATTTTTTAAATCTCCTACTTATTAATTTTTCAAATATTAATAAATTAGTATTTTTTTATTCTGAA
66 ATTTTTTAAATCT-CTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATT-TGAA
* * ** *
21728 TAGGCTTGTATCATGAAAAACAATTGTTTTATGACAAAACAAAAGTTCATA
129 TAAGCTTGTATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATA
* * * * * * *
21779 ATGATTTGAAATAGATAATTGTTTAAATGGCCATAATTATTTGAATTGATTCGATAAACCGATTT
1 ACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGATAAACAGATTT
* * * * *
21844 ATGTTTTAAATCTCTAACTTATCAATTTTT-ATAATATTAATAAAGTAATATTATTTTATTTCAG
66 ATTTTTTAAATCTCT-ACTTATTAATTTTTCA-AATATTAATAAATTAGTATTATTTTATTTGA-
* * * * * *
21908 ATAAGCTTTTATGAACTTAAAACAATTATTTTATGATAAAATATAAGGTCATA
128 ATAAGCTTGTATGAAC-AAAAACAATTGTTTTATGACAAAACAAAAGGTCATA
* * * * * * * *
21961 ACGATTTTAAATAAATAATTGTTCAAATAGTCAAAAATATTTGAACTTG-TTTGGTAAATAGGTT
1 ACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAC-TGATTCGATAAACAGATT
* * * * * * * *
22025 TTTTTTTTCTAATTTCTTACTGAATAA-TTTTCTGAATGTTAATAAACTAGTATTATTTTATTTC
65 TATTTTTT-AAATCTC-TACTTATTAATTTTTC-AAATATTAATAAATTAGTATTATTTTATTT-
* * * **** * * *
22089 TAATAAGCATATATGAGTTGAAACAATTATTTTATGACTAAACAAAAGGTCAAA
126 GAATAAGCTTGTATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATA
* * *
22143 ACGATTTGAAATAGATAATTGTTCTAATAGTCTTAACTATTTGAACTGATTC-ATCAAACACATT
1 ACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGAT-AAACAGATT
* * * * *
22207 TATTTTTTAAATC-CTTACTTAGTAATGTTT-AGAATATT-ATTAATCTAGCAATATTTTACTTT
65 TATTTTTTAAATCTC-TACTTATTAATTTTTCA-AATATTAATAAAT-TAGTATTATTTTA-TTT
* * *
22269 GAATAAGCTTGT-TGAACAAAAACTAAATGTTTTAGGACAAAACAAAA-ATCATA
126 GAATAAGCTTGTATGAACAAAAAC-AATTGTTTTATGACAAAACAAAAGGTCATA
* * * * * * *
22322 ACAATTGGAGATAGATAATTATTCAAATAGTCATAACTATTTGAA-TGGTTCGGTAAAGAGATTT
1 ACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGATAAACAGATTT
* * *
22386 AGTTTTTAAA--TCT-CTTATTAA-TTTTCAAAATAGTAATAAAGTAGTATTATTTTATTCTGAA
66 ATTTTTTAAATCTCTACTTATTAATTTTTC-AAATATTAATAAATTAGTATTATTTTATT-TGAA
** *
22447 TAATTTTGTATGAATAAAAACAATTGGTTTT
129 TAAGCTTGTATGAACAAAAACAATT-GTTTT
22478 GGAACATTAA
Statistics
Matches: 849, Mismatches: 173, Indels: 84
0.77 0.16 0.08
Matches are distributed among these distances:
174 5 0.01
175 37 0.04
176 25 0.03
177 32 0.04
178 38 0.04
179 63 0.07
180 61 0.07
181 223 0.26
182 182 0.21
183 175 0.21
184 8 0.01
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.41
Consensus pattern (179 bp):
ACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGATAAACAGATTT
ATTTTTTAAATCTCTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTTGAATA
AGCTTGTATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATA
Found at i:22055 original size:364 final size:360
Alignment explanation
Indices: 21292--22477 Score: 1099
Period size: 364 Copynumber: 3.3 Consensus size: 360
21282 ACTAATATGG
* * *
21292 TAAACAGATTTATTTATTAAATCT-CT--T-AATAATTTTTGAAATATTAATAAATTAATATTAT
1 TAAACAGATTTATTTTTTAAATCTCCTACTGAATAATTTTTCAAATATTAATAAATTAGTATTAT
* * ** * *
21353 TTTATT-TCGAAGAAACTTATATGAACAAAAACATTTGTTTTATGATAAAACAAAAGCTCATAAC
66 TTTATTCT-GAATAAGCTTATATGATGAAAAACAATTGTTTTATGACAAAACAAAAGCTCATAAC
* * *
21417 GATTTGAAATAGATAATT-ATTAATATAGCCTTAACTATTTGAATTGGTTCGATAAACAATTTTA
130 GATTTGAAATAGATAATTGTTTAA-ATAGCCTTAACTATTTGAATTGATTCGATAAACCA-TTTA
* * * * * * * * *
21481 TTTTTTTTAAATCTATTAGTTATTAAATTTCATAATATTACTAGATTAGTATTATTTTATTTTGA
193 --TTTTTTAAATCTCTTACTTA-TAATTTTTATAATATTAATAAAGTAATATTATTTTATTTAGA
* * * * * *
21546 ATAGGCTTGTATGAAGATAAATAATTGTTTTATGACAAAATAAAAGGTTATAATGATTGGAAATA
255 ATAAGCTTGTATGAACATAAACAATTATTTTATGACAAAATAAAAGGTCATAACGATTGGAAATA
* * *
21611 TATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGA
320 AATAATTGTTCAAATAGTCAAAAATATTTGAACTGATTCGA
* * *
21652 TAAACAGATTTATTTTTTAAATCTCCTACTTATTAATTTTTCAAATATTAATAAATTAGTATTTT
1 TAAACAGATTTATTTTTTAAATCTCCTACTGAATAATTTTTCAAATATTAATAAATTAGTATTAT
* * * * *
21717 TTTATTCTGAATAGGCTTGTATCATGAAAAACAATTGTTTTATGACAAAACAAAAGTTCATAATG
66 TTTATTCTGAATAAGCTTATATGATGAAAAACAATTGTTTTATGACAAAACAAAAGCTCATAACG
* * * *
21782 ATTTGAAATAGATAATTGTTTAAATGGCCATAATTATTTGAATTGATTCGATAAACCGATTTATG
131 ATTTGAAATAGATAATTGTTTAAATAGCCTTAACTATTTGAATTGATTCGATAAACC-ATTTATT
*
21847 TTTTAAATCTCTAACTTATCAATTTTTATAATATTAATAAAGTAATATTATTTTATTTCAG-ATA
195 TTTTAAATCTCTTACTTAT-AATTTTTATAATATTAATAAAGTAATATTATTTTATTT-AGAATA
* * * * **
21911 AGCTTTTATGAACTTAAAACAATTATTTTATGATAAAATATAAGGTCATAACGATTTTAAATAAA
258 AGCTTGTATGAACAT-AAACAATTATTTTATGACAAAATAAAAGGTCATAACGATTGGAAATAAA
* *
21976 TAATTGTTCAAATAGTCAAAAATATTTGAACTTG-TTTGG
322 TAATTGTTCAAATAGTCAAAAATATTTGAAC-TGATTCGA
* * * * * * * * *
22015 TAAATAGGTTTTTTTTTTCTAATTTCTTACTGAATAA-TTTTCTGAATGTTAATAAACTAGTATT
1 TAAACAGATTTATTTTTT-AAATCTCCTACTGAATAATTTTTC-AAATATTAATAAATTAGTATT
* * * *
22079 ATTTTATTTCT-AATAAGCATATATGAGTTG--AAACAATTATTTTATGACTAAACAAAAGGTCA
64 ATTTTA-TTCTGAATAAGCTTATATGA--TGAAAAACAATTGTTTTATGACAAAACAAAAGCTCA
* * *
22141 AAACGATTTGAAATAGATAATTGTTCT-AATAGTCTTAACTATTTGAACTGATTC-ATCAAACAC
126 TAACGATTTGAAATAGATAATTGTT-TAAATAGCCTTAACTATTTGAATTGATTCGAT-AAAC-C
* * * ** ** *
22204 ATTTATTTTTTAAATC-CTTACTTAGTAATGTTTAGAATATTATTAATCTAGCAATATTTTACTT
188 ATTTATTTTTTAAATCTCTTACTTA-TAATTTTTATAATATTAATAAAGTAATATTATTTTA-TT
* * * * * * *
22268 T-GAATAAGCTTGT-TGAACAAAAACTAAATGTTTTAGGACAAAACAAAA-ATCATAACAATTGG
251 TAGAATAAGCTTGTATGAACATAAAC-AATTATTTTATGACAAAATAAAAGGTCATAACGATTGG
* * * * * * *
22330 AGATAGATAATTATTCAAATAGTCATAACTATTTGAA-TGGTTCGG
315 AAATAAATAATTGTTCAAATAGTCAAAAATATTTGAACTGATTCGA
* * * * *
22375 TAAAGAGATTTAGTTTTTAAATCT-CT--T-ATTAA-TTTTCAAAATAGTAATAAAGTAGTATTA
1 TAAACAGATTTATTTTTTAAATCTCCTACTGAATAATTTTTC-AAATATTAATAAATTAGTATTA
** *
22435 TTTTATTCTGAATAATTTTGTATGAAT-AAAAACAATTGGTTTT
65 TTTTATTCTGAATAAGCTTATATG-ATGAAAAACAATT-GTTTT
22478 GGAACATTAA
Statistics
Matches: 674, Mismatches: 123, Indels: 62
0.78 0.14 0.07
Matches are distributed among these distances:
354 5 0.01
355 50 0.07
356 6 0.01
358 1 0.00
359 6 0.01
360 41 0.06
361 49 0.07
362 85 0.13
363 139 0.21
364 278 0.41
365 12 0.02
366 2 0.00
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.42
Consensus pattern (360 bp):
TAAACAGATTTATTTTTTAAATCTCCTACTGAATAATTTTTCAAATATTAATAAATTAGTATTAT
TTTATTCTGAATAAGCTTATATGATGAAAAACAATTGTTTTATGACAAAACAAAAGCTCATAACG
ATTTGAAATAGATAATTGTTTAAATAGCCTTAACTATTTGAATTGATTCGATAAACCATTTATTT
TTTAAATCTCTTACTTATAATTTTTATAATATTAATAAAGTAATATTATTTTATTTAGAATAAGC
TTGTATGAACATAAACAATTATTTTATGACAAAATAAAAGGTCATAACGATTGGAAATAAATAAT
TGTTCAAATAGTCAAAAATATTTGAACTGATTCGA
Found at i:22817 original size:182 final size:179
Alignment explanation
Indices: 22499--23307 Score: 589
Period size: 182 Copynumber: 4.5 Consensus size: 179
22489 TTTTAAATAA
** * *
22499 ATTTATTTTTAAAATT-TTTACTTATTAATTTTTGAAACATTAATAAATTTATATTATTTTATTT
1 ATTTATTTTTTTAATTCTTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTATTT
* * * * * *
22563 GAAATAAGCTTGAATGAATAG-AACCAATTGTTTTATGACAAAACAAAAGGTTGTAATGTTTTGA
66 CAAATAAGC-TAAATGAATTGAAACAAATT-TTTTATGACAAAACAAAA-GTTATAATGATTTGA
*
22627 AATAGATAATTATTAAGATAGTCATAATTATTTGAACTTGTTCAATAAACAG
128 AATAGATAATTATTAAGATAGTCATAATTATTTGAACTTGTTCGATAAACAG
* * *
22679 ATTTATTTTTTTAATTCTCTTACTTTTTAGTTTTTGGAATATTAATAAATTAATATTATTTTATT
1 ATTTATTTTTTTAATTCT-TTACTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTATT
* *
22744 TCAAATAAGCTAACATGAATTGAAACAAATTTTTTATTACAAAACAAAATGTTACAATGATTTGA
65 TCAAATAAGCTAA-ATGAATTGAAACAAATTTTTTATGACAAAACAAAA-GTTATAATGATTTGA
* * * * *
22809 AGTAGATAATTATTCAA-ATAGTCATGACTATTTGAACTTGTTTGGTAAAC--
128 AATAGATAATTATT-AAGATAGTCATAATTATTTGAACTTGTTCGATAAACAG
* * * * *
22859 --TTATATTTTTAAGATCTTTTACTTATTAATTGTTGAAATATTAATAAATCAATATTATTTTAA
1 ATTTATTTTTTTAA-TTC-TTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTAT
* * * * * *
22922 TCCGAATAAGCTCATATGGA-TGAAAACAATTGTTTTTATGACAAAA-AAAA-TCATAA-GAATT
64 TTCAAATAAGCT-AAATGAATTG-AAACAAAT-TTTTTATGACAAAACAAAAGTTATAATG-ATT
* * * ** * *
22983 TGAAATAAATAATTATTCAGATAGTCATAATGATAAGAATTTGTTCGATAAATAG
125 TGAAATAGATAATTATTAAGATAGTCATAATTATTTGAACTTGTTCGATAAACAG
* * * * **
23038 ATTTA-TTTTTTAAATCTTTTGCTTATTAATTGTCTT--AATGTTAATATATTTGTATTATTTTA
1 ATTTATTTTTTTAATTC-TTTACTTATTAATT-T-TTGAAATATTAATAAATTAATATTATTTTA
* * * ** * * * * **
23100 TTTGAAGTAAGCTTATATGAACAGATA-AAATCATTATATGACAAACCAAAAGGTTATAGCGATT
63 TTTCAAATAAGC-TAAATGAATTGAAACAAAT-TTTTTATGACAAAACAAAA-GTTATAATGATT
** * * * * * *
23164 CCAAATCA-ATAACTATTCAA-AT-GGCGATAATTATTTAAACTTGTTTGGTAAATAG
125 TGAAAT-AGATAATTATT-AAGATAGTC-ATAATTATTTGAACTTGTTCGATAAACAG
* * * * *
23219 ATTCA-TTTTTTAAATCTCTTAATTATT-ATTTTTTAGAATATTAATAACA-TGATATTATTTTA
1 ATTTATTTTTTTAATTCT-TTACTTATTAATTTTTGA-AATATTAATAA-ATTAATATTATTTTA
* * *
23281 TTTCCAATAAGCTTATATGAACTGAAA
63 TTTCAAATAAGC-TAAATGAATTGAAA
23308 TAAGTTTGTT
Statistics
Matches: 500, Mismatches: 97, Indels: 63
0.76 0.15 0.10
Matches are distributed among these distances:
176 2 0.00
177 46 0.09
178 29 0.06
179 124 0.25
180 44 0.09
181 115 0.23
182 131 0.26
183 9 0.02
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.43
Consensus pattern (179 bp):
ATTTATTTTTTTAATTCTTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTATTT
CAAATAAGCTAAATGAATTGAAACAAATTTTTTATGACAAAACAAAAGTTATAATGATTTGAAAT
AGATAATTATTAAGATAGTCATAATTATTTGAACTTGTTCGATAAACAG
Found at i:23476 original size:17 final size:19
Alignment explanation
Indices: 23454--23489 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
23444 TAATAACTAA
23454 TTATTAAAA-AA-TTATAT
1 TTATTAAAATAATTTATAT
23471 TTATTAAAATAATTTATAT
1 TTATTAAAATAATTTATAT
23490 ATTTATTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
18 2 0.12
19 6 0.35
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TTATTAAAATAATTTATAT
Found at i:23833 original size:18 final size:17
Alignment explanation
Indices: 23748--23817 Score: 59
Period size: 17 Copynumber: 3.9 Consensus size: 17
23738 TAGTGGAGTA
*
23748 TATTTAATTTATTTAAT
1 TATTAAATTTATTTAAT
* **
23765 TAAATAAAGATATTTATAT
1 T-ATTAAATTTATTTA-AT
*
23784 TAGAGTAAATTTATTTAAT
1 T--ATTAAATTTATTTAAT
23803 TATTAAATTTATTTA
1 TATTAAATTTATTTA
23818 TCTTATAAAT
Statistics
Matches: 41, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
17 14 0.34
18 10 0.24
19 6 0.15
20 11 0.27
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (17 bp):
TATTAAATTTATTTAAT
Found at i:24100 original size:13 final size:14
Alignment explanation
Indices: 24075--24122 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
24065 TAATTATCTG
24075 AAATTATAATAATT
1 AAATTATAATAATT
24089 AAATTA-AATAATTT
1 AAATTATAATAA-TT
* *
24103 TAATTTTAAT-ATT
1 AAATTATAATAATT
24116 AAATTAT
1 AAATTAT
24123 TAAAATCATT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
13 12 0.43
14 13 0.46
15 3 0.11
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AAATTATAATAATT
Found at i:24106 original size:22 final size:22
Alignment explanation
Indices: 24076--24124 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
24066 AATTATCTGA
24076 AATTATAATAATTAA-ATTAAAT
1 AATTATAAT-ATTAATATTAAAT
* *
24098 AATTTTAATTTTAATATTAAAT
1 AATTATAATATTAATATTAAAT
*
24120 TATTA
1 AATTA
24125 AAATCATTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
AATTATAATATTAATATTAAAT
Found at i:24650 original size:19 final size:21
Alignment explanation
Indices: 24626--24672 Score: 71
Period size: 22 Copynumber: 2.3 Consensus size: 21
24616 ATATTATTGA
24626 ATTATTAAA-TAA-TAATAAT
1 ATTATTAAACTAATTAATAAT
24645 ATTATTAAACTAATTTAATAAT
1 ATTATTAAACTAA-TTAATAAT
24667 ATTATT
1 ATTATT
24673 GAATTATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 9 0.36
20 3 0.12
22 13 0.52
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (21 bp):
ATTATTAAACTAATTAATAAT
Found at i:25380 original size:25 final size:23
Alignment explanation
Indices: 25371--25419 Score: 73
Period size: 22 Copynumber: 2.1 Consensus size: 23
25361 ATTATATATT
25371 ATTTATAATTATATAAA-TATAA
1 ATTTATAATTATATAAATTATAA
25393 ATTTATAATATATATAAATTATCAA
1 ATTTATAAT-TATATAAATTAT-AA
25418 AT
1 AT
25420 AAATTATTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
22 9 0.38
23 8 0.33
24 3 0.12
25 4 0.17
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (23 bp):
ATTTATAATTATATAAATTATAA
Found at i:25409 original size:17 final size:17
Alignment explanation
Indices: 25357--25412 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
25347 ATAAAAATTA
* *
25357 ATAAATTATATATTATTT
1 ATAAATT-TATAATATAT
*
25375 AT-AA-TTAT-ATAAAT
1 ATAAATTTATAATATAT
25389 ATAAATTTATAATATAT
1 ATAAATTTATAATATAT
25406 ATAAATT
1 ATAAATT
25413 ATCAAATAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
14 5 0.16
15 5 0.16
16 5 0.16
17 14 0.45
18 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
ATAAATTTATAATATAT
Found at i:25422 original size:29 final size:31
Alignment explanation
Indices: 25356--25430 Score: 84
Period size: 31 Copynumber: 2.5 Consensus size: 31
25346 AATAAAAATT
* * *
25356 AATAAATTATATATTATTTATAATTATATAA
1 AATAAATTATATAATATATATAAATATATAA
*
25387 ATATAAATT-TATAATATATATAAAT-TATCA
1 A-ATAAATTATATAATATATATAAATATATAA
25417 AATAAATTAT-TAAT
1 AATAAATTATATAAT
25431 TCCTATTATT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
29 11 0.29
30 6 0.16
31 14 0.37
32 7 0.18
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.45
Consensus pattern (31 bp):
AATAAATTATATAATATATATAAATATATAA
Found at i:25620 original size:19 final size:19
Alignment explanation
Indices: 25596--25697 Score: 62
Period size: 20 Copynumber: 5.7 Consensus size: 19
25586 TTATTATGTA
25596 AATTATTTATATATAAAAT
1 AATTATTTATATATAAAAT
25615 AATTATATTAT-TAT--AAT
1 AATTAT-TTATATATAAAAT
*
25632 -A-TATTTATA-AT-AATT
1 AATTATTTATATATAAAAT
***
25647 AATTAAAAATATATAAAAT
1 AATTATTTATATATAAAAT
25666 AAATTTATTTA-ATATAAAAT
1 -AA-TTATTTATATATAAAAT
*
25686 TA-T-TTTATATAT
1 AATTATTTATATAT
25698 TATAACATTA
Statistics
Matches: 64, Mismatches: 9, Indels: 22
0.67 0.09 0.23
Matches are distributed among these distances:
14 6 0.09
15 5 0.08
16 6 0.09
17 13 0.20
18 2 0.03
19 13 0.20
20 15 0.23
21 4 0.06
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
AATTATTTATATATAAAAT
Found at i:25639 original size:14 final size:14
Alignment explanation
Indices: 25602--25651 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
25592 TGTAAATTAT
*
25602 TTATATATAAAATAA
1 TTATAT-TATAATAA
*
25617 TTATATTATTATAA
1 TTATATTATAATAA
25631 -TATATTTATAATAA
1 TTATA-TTATAATAA
25645 TTA-ATTA
1 TTATATTA
25652 AAAATATATA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
13 7 0.23
14 15 0.50
15 8 0.27
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TTATATTATAATAA
Found at i:25682 original size:15 final size:15
Alignment explanation
Indices: 25645--25696 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
25635 TTTATAATAA
*
25645 TTAAT-TAAAAATAT
1 TTAATATAAAATTAT
* * *
25659 ATAAAATAAATTTAT
1 TTAATATAAAATTAT
25674 TTAATATAAAATTAT
1 TTAATATAAAATTAT
*
25689 TTTATATA
1 TTAATATA
25697 TTATAACATT
Statistics
Matches: 29, Mismatches: 8, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
14 3 0.10
15 26 0.90
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
TTAATATAAAATTAT
Found at i:25692 original size:20 final size:20
Alignment explanation
Indices: 25657--25708 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
25647 AATTAAAAAT
* *
25657 ATATAAAATAAATTTATTTA
1 ATATAAAATTAATTTATATA
*
25677 ATATAAAATTATTTTATATA
1 ATATAAAATTAATTTATATA
* *
25697 TTATAACATTAA
1 ATATAAAATTAA
25709 ATTTTCTTAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (20 bp):
ATATAAAATTAATTTATATA
Found at i:26412 original size:24 final size:25
Alignment explanation
Indices: 26375--26425 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
26365 TAGCAATTAA
*
26375 TAATTTAACTTATTATAAATTATAT
1 TAATATAACTTATTATAAATTATAT
* *
26400 TAATATAA-TTATTATATATTTTAT
1 TAATATAACTTATTATAAATTATAT
26424 TA
1 TA
26426 TTGTTTATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (25 bp):
TAATATAACTTATTATAAATTATAT
Found at i:26555 original size:25 final size:29
Alignment explanation
Indices: 26527--26590 Score: 73
Period size: 28 Copynumber: 2.3 Consensus size: 29
26517 ATATAGTATC
*
26527 AATATATTAT-TAT-TAATTAAA-AA-AT
1 AATATATTATATATATAAATAAATAATAT
26552 AATATAATTATATATATAAATAAATAATTAT
1 AATAT-ATTATATATATAAATAAATAA-TAT
26583 AATATATT
1 AATATATT
26591 TAGATAAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
25 5 0.16
26 5 0.16
27 3 0.09
28 7 0.22
29 2 0.06
30 3 0.09
31 7 0.22
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (29 bp):
AATATATTATATATATAAATAAATAATAT
Found at i:26561 original size:23 final size:26
Alignment explanation
Indices: 26530--26601 Score: 73
Period size: 27 Copynumber: 2.9 Consensus size: 26
26520 TAGTATCAAT
*
26530 ATATTATTATTA-AT-TAAA-AAATA
1 ATATAATTATTATATATAAATAAATA
26553 ATATAATTA-TATATATAAATAAATA
1 ATATAATTATTATATATAAATAAATA
*
26578 ATTATAATATATT-TAGATAAATAA
1 A-TATAAT-TATTATATATAAATAA
26602 CAATATATTA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
22 2 0.05
23 10 0.24
24 4 0.10
25 6 0.15
26 6 0.15
27 12 0.29
28 1 0.02
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (26 bp):
ATATAATTATTATATATAAATAAATA
Found at i:26584 original size:10 final size:11
Alignment explanation
Indices: 26550--26626 Score: 53
Period size: 10 Copynumber: 7.5 Consensus size: 11
26540 TAATTAAAAA
26550 ATAATATAATT
1 ATAATATAATT
26561 ATATATATAA--
1 ATA-ATATAATT
26571 ATAA-ATAATT
1 ATAATATAATT
26581 ATAATAT-ATT
1 ATAATATAATT
*
26591 -TAGATA-AATA
1 ATA-ATATAATT
*
26601 ACAATAT-ATT
1 ATAATATAATT
*
26611 AT-ATTTAATT
1 ATAATATAATT
26621 ATAATA
1 ATAATA
26627 GTTTATCTTA
Statistics
Matches: 50, Mismatches: 6, Indels: 20
0.66 0.08 0.26
Matches are distributed among these distances:
8 4 0.08
9 6 0.12
10 26 0.52
11 8 0.16
12 6 0.12
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (11 bp):
ATAATATAATT
Found at i:26608 original size:25 final size:26
Alignment explanation
Indices: 26544--26617 Score: 73
Period size: 25 Copynumber: 2.9 Consensus size: 26
26534 TATTATTAAT
* * *
26544 TAAA-AAATAATATAAT-TATATATA
1 TAAATAAACAATATAATATATTTAGA
*
26568 TAAATAAATAATTATAATATATTTAGA
1 TAAATAAACAA-TATAATATATTTAGA
*
26595 TAAAT-AACAATATATTATATTTA
1 TAAATAAACAATATAATATATTTA
26618 ATTATAATAG
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
24 4 0.09
25 18 0.42
26 10 0.23
27 11 0.26
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (26 bp):
TAAATAAACAATATAATATATTTAGA
Found at i:28528 original size:25 final size:25
Alignment explanation
Indices: 28483--28552 Score: 70
Period size: 25 Copynumber: 2.7 Consensus size: 25
28473 TAACATATTA
* **
28483 ATTAAGTAATATATTATTACTATTTTT
1 ATTAA-TAATAT-TTAATACTATAATT
28510 ATTAATAATATTTAATACTATAATT
1 ATTAATAATATTTAATACTATAATT
28535 ATATAA-AATATTTGAATA
1 AT-TAATAATATTT-AATA
28553 AATTCATATA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
25 20 0.53
26 13 0.34
27 5 0.13
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (25 bp):
ATTAATAATATTTAATACTATAATT
Found at i:29202 original size:19 final size:19
Alignment explanation
Indices: 29170--29206 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
29160 AAAATTAAAC
*
29170 AATATAATATTTTTATTAT
1 AATATAATAATTTTATTAT
*
29189 AATATTATAATTTTATTA
1 AATATAATAATTTTATTA
29207 CGTACTTGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
AATATAATAATTTTATTAT
Found at i:29689 original size:24 final size:26
Alignment explanation
Indices: 29641--29689 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 26
29631 ACAGTATAAC
*
29641 CAATATACTTAAAAGTTAATCTTAAA
1 CAATATACTTAAAAGTTAATATTAAA
*
29667 CAATATA-TTTAAAG-TAATATTAA
1 CAATATACTTAAAAGTTAATATTAA
29690 TTATTAATTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 8 0.38
25 6 0.29
26 7 0.33
ACGTcount: A:0.51, C:0.08, G:0.04, T:0.37
Consensus pattern (26 bp):
CAATATACTTAAAAGTTAATATTAAA
Found at i:29873 original size:4 final size:4
Alignment explanation
Indices: 29864--29893 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
29854 TATTAATTTA
29864 AATT AATT AATT AATT AATTT AATT AATT A
1 AATT AATT AATT AATT AA-TT AATT AATT A
29894 TATACAATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
AATT
Found at i:29881 original size:17 final size:18
Alignment explanation
Indices: 29855--29893 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
29845 TTTAATAGTT
29855 ATTAATTTAAATTAATTA
1 ATTAATTTAAATTAATTA
*
29873 ATTAA-TTAATTTAATTA
1 ATTAATTTAAATTAATTA
29890 ATTA
1 ATTA
29894 TATACAATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
ATTAATTTAAATTAATTA
Found at i:29923 original size:21 final size:19
Alignment explanation
Indices: 29891--29929 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
29881 ATTTAATTAA
*
29891 TTATATACAATTCAAATAT
1 TTATATACAATTAAAATAT
29910 TTATATACAAAATTAAAATA
1 TTATATAC--AATTAAAATA
29930 CAAAAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
21 9 0.53
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (19 bp):
TTATATACAATTAAAATAT
Found at i:30134 original size:12 final size:12
Alignment explanation
Indices: 30091--30150 Score: 52
Period size: 12 Copynumber: 4.8 Consensus size: 12
30081 TTATAAACAT
30091 ATAATATTATT-
1 ATAATATTATTA
* *
30102 ATATTAGTAATTA
1 ATAATA-TTATTA
30115 TATAAATATTATTA
1 -AT-AATATTATTA
30129 ATAATATTCATTA
1 ATAATATT-ATTA
30142 AT-ATATTAT
1 ATAATATTAT
30151 AAAATTAATG
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
11 7 0.17
12 15 0.38
13 8 0.20
14 7 0.17
15 3 0.08
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (12 bp):
ATAATATTATTA
Found at i:30336 original size:19 final size:19
Alignment explanation
Indices: 30314--30354 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
30304 ATAATTTTCA
* *
30314 AAATATTATTAACTATTTT
1 AAATAATATTAACTATTAT
*
30333 AAATAATATTTACTATTAT
1 AAATAATATTAACTATTAT
30352 AAA
1 AAA
30355 CAACAATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (19 bp):
AAATAATATTAACTATTAT
Found at i:30753 original size:9 final size:9
Alignment explanation
Indices: 30739--30767 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
30729 CTTGTTTGAT
30739 ATTATATTA
1 ATTATATTA
30748 ATTATATTA
1 ATTATATTA
30757 ATTAT-TTA
1 ATTATATTA
30765 ATT
1 ATT
30768 TTTAGTTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 6 0.30
9 14 0.70
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (9 bp):
ATTATATTA
Found at i:31294 original size:182 final size:179
Alignment explanation
Indices: 30815--31387 Score: 674
Period size: 182 Copynumber: 3.2 Consensus size: 179
30805 TTAATAAGAC
* * * *
30815 AATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTATCGAACAAATTCAAATCGTTATGACTA
1 AATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTATCGAACAAGTTCAAATAGTTATGACTA
* * * *
30880 TCTAAATAATTATTTATTTCAAATTC-TTATGACTTTTTTGTTTT-TCCATAAAACAATTGTTTC
66 TCTTAATAATTATCTATTTCAAA-TCATTATAAC-ATTTTGTTTTGT-CATAAAACAATTGTTTC
* * * * * *
30943 TATCCA-TACGAGCTTATTCGAATTAAAATAATATTGATTTATTAATATTTCAAC
128 TATTCATTA--AGCTTATTTGAAATAAAATAATA-TAATTTATTAATATTCCAAA
* * * * *
30997 AATTAATAAGTAAAAGATTTTAAAAAT--ATAAGTTTACCAAACAAGTTCAAATAGTCATGACTA
1 AATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTATCGAACAAGTTCAAATAGTTATGACTA
* * * *
31060 T-TTGAATAATTATCTACTTCAAATCATTGTAACATTTTGTTTTGTAATAAAACAATTGTTTCAA
66 TCTT-AATAATTATCTATTTCAAATCATTATAACATTTTGTTTTGTCATAAAACAATTGTTTCTA
*
31124 TTCATGTTAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCCAAA
130 TTCAT-TAAGCTTATTTGAAATAAAATAATA-TAATTTATTAATATTCCAAA
* * * *
31176 AATTAAAAAGTAAGAGAATTAAAAAAATAAATATGTTTATCGAATAAGTTCAAATAGTTATGACT
1 AATTAATAAGTAAAAG-ATTTAAAAAATAAATATGTTTATCGAACAAGTTCAAATAGTTATGACT
* * * *
31241 ATCTTAATAATTATCTATTTCAAAACATTACAACCTTTTGTTTTGTCATAAAACAATTGGTTCTA
65 ATCTTAATAATTATCTATTTCAAATCATTATAACATTTTGTTTTGTCATAAAACAATTGTTTCTA
* *
31306 TTCATTCAAGCTTATTTCAAATAAAATAATATAAATTTATTAATGTTCCAAA
130 TTCATT-AAGCTTATTTGAAATAAAATAATAT-AATTTATTAATATTCCAAA
*
31358 AATTAATAAGTAAAA-ATTTTAAAAATAAAT
1 AATTAATAAGTAAAAGATTTAAAAAATAAAT
31388 TTATTTAAAA
Statistics
Matches: 331, Mismatches: 49, Indels: 24
0.82 0.12 0.06
Matches are distributed among these distances:
179 84 0.25
180 74 0.22
181 3 0.01
182 168 0.51
183 2 0.01
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.39
Consensus pattern (179 bp):
AATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTATCGAACAAGTTCAAATAGTTATGACTA
TCTTAATAATTATCTATTTCAAATCATTATAACATTTTGTTTTGTCATAAAACAATTGTTTCTAT
TCATTAAGCTTATTTGAAATAAAATAATATAATTTATTAATATTCCAAA
Found at i:32167 original size:181 final size:179
Alignment explanation
Indices: 31721--32186 Score: 426
Period size: 181 Copynumber: 2.6 Consensus size: 179
31711 AAGACTATTA
* * * * * * * *
31721 GAACAATGATCTATTTCAAATCGTTTTGACATTTTGTTTAGTCATAAAATAATTGCTTCAACTCA
1 GAACAATTATCGATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTTCTTTAACTCA
* * *
31786 TACATGCTTATTCGAAATAAAATAATACTAATTTATTAACATTTAGAAAATTATTAAGTAAGAAA
66 TACAAGCTTATTCGAAATAAAATAATA-TTATTTATTAATATTTAGAAAATTATTAAGTAAGAAA
* * * *
31851 TTAGAAAAAAAATCTATTTACCAAACAAGTTCAAATATTTTTTACTATTT
130 TTAGAAAAAAAATCTATTTACCAAACAAGTTCAAATAATTATGACCATTT
* * * * * * * *
31901 GAACAATTATCTATTTGAAATCGTTATGACCTTATATTTTATCATAAAACAA-TTGTTTCAGTCC
1 GAACAATTATCGATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTTCTTTAACT-C
* * *
31965 CTAAAAGCTTATCTC-AAATAAAATAATATTACTTTATTAATATTATA-AAAATTGA-TAAGTTA
65 ATACAAGCTTAT-TCGAAATAAAATAATATTA-TTTATTAATATT-TAGAAAATT-ATTAAGTAA
* * * * *
32027 GAGATTTA-AAACATAAATC-AGTTTATCGAATC-AGTTCAAATAATTATGGCCATTT
126 GA-AATTAGAAA-AAAAATCTA-TTTA-CCAAACAAGTTCAAATAATTATGACCATTT
** * * *
32082 GAATGATTATCGATTTCAAATCGTTATGACCTTTTGTTTTGTCACAAAACAATTATTTTTTA-TC
1 GAACAATTATCGATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATT-TCTTTAACTC
* *
32146 ATACAAGTTTATTCGAAATAAAATAATACTGATTTATTAAT
65 ATACAAGCTTATTCGAAATAAAATAATA-TTATTTATTAAT
32187 TCAAATATTA
Statistics
Matches: 230, Mismatches: 43, Indels: 25
0.77 0.14 0.08
Matches are distributed among these distances:
179 7 0.03
180 97 0.42
181 113 0.49
182 8 0.03
183 5 0.02
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.39
Consensus pattern (179 bp):
GAACAATTATCGATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTTCTTTAACTCA
TACAAGCTTATTCGAAATAAAATAATATTATTTATTAATATTTAGAAAATTATTAAGTAAGAAAT
TAGAAAAAAAATCTATTTACCAAACAAGTTCAAATAATTATGACCATTT
Found at i:32338 original size:26 final size:24
Alignment explanation
Indices: 32309--32375 Score: 62
Period size: 26 Copynumber: 2.7 Consensus size: 24
32299 AATTAAACTG
32309 TAATTAAATATAAATTAAATAATAGT
1 TAATTAAATATAAATTAAAT-A-AGT
* * * *
32335 TAATTAGATATTAGTTTAATAAGT
1 TAATTAAATATAAATTAAATAAGT
*
32359 TAATTAATTATATAATT
1 TAATTAAATATA-AATT
32376 GTTATATAAT
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
24 12 0.38
25 4 0.12
26 16 0.50
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (24 bp):
TAATTAAATATAAATTAAATAAGT
Found at i:33002 original size:26 final size:25
Alignment explanation
Indices: 32935--33009 Score: 73
Period size: 26 Copynumber: 3.0 Consensus size: 25
32925 ATACATTATT
* *
32935 AATAATTAATAATGATTAATTTTTTTG
1 AATAATTAATAA--AATAATTTATTTG
* *
32962 -ATTATTGATAAAATAATTCTATTTG
1 AATAATTAATAAAATAATT-TATTTG
32987 AATAATTAATAAAAT-ATTTATTT
1 AATAATTAATAAAATAATTTATTT
33010 AGTTTATATT
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
24 11 0.28
25 8 0.20
26 21 0.52
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.49
Consensus pattern (25 bp):
AATAATTAATAAAATAATTTATTTG
Found at i:34110 original size:30 final size:31
Alignment explanation
Indices: 34066--34125 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
34056 TGATAACAAT
34066 TAAATTTAATAAATTACTTA-TTAAACTTTAA
1 TAAATTTAATAAATTACTTATTTAAA-TTTAA
* *
34097 TAAA-TTAGTAAATTATTTATTTAAATTTA
1 TAAATTTAATAAATTACTTATTTAAATTTA
34126 TCCAAGCAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 17 0.65
31 9 0.35
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (31 bp):
TAAATTTAATAAATTACTTATTTAAATTTAA
Found at i:34430 original size:22 final size:22
Alignment explanation
Indices: 34405--34446 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
34395 ATATTTAACT
*
34405 AATATATATATTAATTATTAGC
1 AATATATATAATAATTATTAGC
34427 AATATATATAATAATTATTA
1 AATATATATAATAATTATTA
34447 ATAATAATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (22 bp):
AATATATATAATAATTATTAGC
Found at i:34452 original size:22 final size:22
Alignment explanation
Indices: 34399--34452 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
34389 ATCGTTATAT
*
34399 TTAACTAATATATATATTAATTA
1 TTAA-TAATATATATAATAATTA
**
34422 TTAGCAATATATATAATAATTA
1 TTAATAATATATATAATAATTA
34444 TTAATAATA
1 TTAATAATA
34453 ATTGAGATAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 23 0.88
23 3 0.12
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (22 bp):
TTAATAATATATATAATAATTA
Found at i:34753 original size:23 final size:23
Alignment explanation
Indices: 34727--34773 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
34717 ATTAAAATAG
* *
34727 ATTTTAAATAATAATTATTTTAT
1 ATTTTAAATAATAATAATGTTAT
* *
34750 ATTTTACATATTAATAATGTTAT
1 ATTTTAAATAATAATAATGTTAT
34773 A
1 A
34774 ATATTAATTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (23 bp):
ATTTTAAATAATAATAATGTTAT
Found at i:35021 original size:19 final size:18
Alignment explanation
Indices: 34988--35032 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
34978 AAGCTTGTAT
*
34988 ATATATTAAATTAAAATAA
1 ATAT-TTAAAATAAAATAA
*
35007 CATATTTAAAATAAATTAA
1 -ATATTTAAAATAAAATAA
35026 ATATTTA
1 ATATTTA
35033 TAATTATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 7 0.30
19 12 0.52
20 4 0.17
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (18 bp):
ATATTTAAAATAAAATAA
Found at i:35631 original size:14 final size:12
Alignment explanation
Indices: 35610--35680 Score: 54
Period size: 14 Copynumber: 5.5 Consensus size: 12
35600 TATTTAATTA
35610 TAAAATTAGTAAT
1 TAAAATTA-TAAT
35623 TAAATATTACTAAT
1 TAAA-ATTA-TAAT
35637 ATAAAATTATAATAT
1 -TAAAATTAT-A-AT
*
35652 TAAAAATA-AAT
1 TAAAATTATAAT
* *
35663 TAATATTAAAAT
1 TAAAATTATAAT
35675 TAAAAT
1 TAAAAT
35681 CCTTATAATA
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
11 8 0.17
12 9 0.19
13 5 0.10
14 20 0.42
15 6 0.12
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (12 bp):
TAAAATTATAAT
Found at i:35668 original size:17 final size:17
Alignment explanation
Indices: 35646--35678 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
35636 TATAAAATTA
35646 TAATATTAAAAATAAAT
1 TAATATTAAAAATAAAT
*
35663 TAATATTAAAATTAAA
1 TAATATTAAAAATAAA
35679 ATCCTTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
TAATATTAAAAATAAAT
Found at i:35965 original size:24 final size:24
Alignment explanation
Indices: 35938--35987 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
35928 GAATATTACT
*
35938 ATTAGTATTATTATAAT-TTTCAAA
1 ATTAGTATTAATATAATATTT-AAA
* *
35962 ATTATTTTTAATATAATATTTAAA
1 ATTAGTATTAATATAATATTTAAA
35986 AT
1 AT
35988 AATTACAAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 19 0.86
25 3 0.14
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (24 bp):
ATTAGTATTAATATAATATTTAAA
Found at i:36208 original size:22 final size:19
Alignment explanation
Indices: 36160--36211 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
36150 TAGTTACTAA
*
36160 TAATTATTAAATTATTTAT
1 TAATTATTAATTTATTTAT
*
36179 AAATTATTAATTTATTATATT
1 TAATTATTAATTTATT-TA-T
36200 TAATATATTAAT
1 TAAT-TATTAAT
36212 CAAATATAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 14 0.52
20 2 0.07
21 4 0.15
22 7 0.26
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
TAATTATTAATTTATTTAT
Found at i:36244 original size:8 final size:8
Alignment explanation
Indices: 36215--36260 Score: 51
Period size: 8 Copynumber: 5.9 Consensus size: 8
36205 TATTAATCAA
36215 ATATAATT
1 ATATAATT
36223 ATATAA-T
1 ATATAATT
*
36230 ATTTAATT
1 ATATAATT
36238 ATATAATT
1 ATATAATT
36246 A-ATACATT
1 ATATA-ATT
*
36254 ATTTAAT
1 ATATAAT
36261 ATGATAAAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
7 9 0.28
8 21 0.66
9 2 0.06
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (8 bp):
ATATAATT
Found at i:36267 original size:24 final size:23
Alignment explanation
Indices: 36215--36260 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
36205 TATTAATCAA
36215 ATATAATTATATAATATTTAATT
1 ATATAATTATATAATATTTAATT
36238 ATATAATTA-ATACATTATTTAAT
1 ATATAATTATATA-A-TATTTAAT
36261 ATGATAAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 3 0.14
23 10 0.48
24 8 0.38
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (23 bp):
ATATAATTATATAATATTTAATT
Found at i:36801 original size:35 final size:33
Alignment explanation
Indices: 36737--36805 Score: 86
Period size: 32 Copynumber: 2.0 Consensus size: 33
36727 AATATTATTA
* *
36737 ATTTATTATTACTATTAAATAAGTTAATTAATT
1 ATTTATTATTAATATTAAACAAGTTAATTAATT
36770 ATTT-TTATTAATATTAATACAAGTTCAAATTAATT
1 ATTTATTATTAATATTAA-ACAAGTT--AATTAATT
36805 A
1 A
36806 AATACAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
32 12 0.39
33 10 0.32
35 9 0.29
ACGTcount: A:0.43, C:0.04, G:0.03, T:0.49
Consensus pattern (33 bp):
ATTTATTATTAATATTAAACAAGTTAATTAATT
Found at i:37445 original size:43 final size:41
Alignment explanation
Indices: 37392--37474 Score: 112
Period size: 43 Copynumber: 2.0 Consensus size: 41
37382 AAGTAAACAA
* **
37392 GGCTCCTCTAAACAAGGGTTCAACAACTTTAGGAAAAATAAAT
1 GGCTCCTCTAAACAAAGGCACAACAACTTT--GAAAAATAAAT
*
37435 GGCTCTTCTAAACAAAGGCACAACAACTTTGAAAAATAAA
1 GGCTCCTCTAAACAAAGGCACAACAACTTTGAAAAATAAA
37475 GGTTCCTTGA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
41 10 0.28
43 26 0.72
ACGTcount: A:0.45, C:0.19, G:0.14, T:0.22
Consensus pattern (41 bp):
GGCTCCTCTAAACAAAGGCACAACAACTTTGAAAAATAAAT
Found at i:37952 original size:88 final size:86
Alignment explanation
Indices: 37849--38107 Score: 351
Period size: 88 Copynumber: 3.0 Consensus size: 86
37839 GGTTTCACAT
*
37849 TTCAAAAATTCTCATTTGAAGACTCAAAGATTCTCATTTGAAGACTCAAAGATTCTCATTTGAAA
1 TTCAAAAATTCTCATTTGAAAACTCAAAGATTCTCATTT-AAGACTCAAAGATTCTCATTT-AAA
37914 ATTCAAAGATTCTCATTTGAAAA
64 ATTCAAAGATTCTCATTTGAAAA
* * *
37937 TTCAAAGATTCTCATTTGAAAACTCAAAGATTCTCATTTAAGACTCAGAGATTCTCATTTAAAAC
1 TTCAAAAATTCTCATTTGAAAACTCAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTAAAAT
* ** *
38002 TCAAAGATTCTTATTTGCGGAT
66 TCAAAGATTCTCATTTG-AAAA
* *
38024 TTCTTAAAAATTCTCATTT-AATACTCAAAGATTCTCATTTAAGACTCAAAGATTCTCATTCAAG
1 TTC--AAAAATTCTCATTTGAAAACTCAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTAA-
*
38088 ACTT-AAAGATTCTCATTTGA
63 AATTCAAAGATTCTCATTTGA
38108 GGGTTCACAA
Statistics
Matches: 151, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
86 20 0.13
87 24 0.16
88 92 0.61
89 15 0.10
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.36
Consensus pattern (86 bp):
TTCAAAAATTCTCATTTGAAAACTCAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTAAAAT
TCAAAGATTCTCATTTGAAAA
Found at i:37988 original size:21 final size:22
Alignment explanation
Indices: 37850--38107 Score: 310
Period size: 22 Copynumber: 11.8 Consensus size: 22
37840 GTTTCACATT
*
37850 TCAAAAATTCTCATTTGAAGAC
1 TCAAAGATTCTCATTTGAAGAC
37872 TCAAAGATTCTCATTTGAAGAC
1 TCAAAGATTCTCATTTGAAGAC
* *
37894 TCAAAGATTCTCATTTGAAAAT
1 TCAAAGATTCTCATTTGAAGAC
* *
37916 TCAAAGATTCTCATTTGAAAAT
1 TCAAAGATTCTCATTTGAAGAC
*
37938 TCAAAGATTCTCATTTGAAAAC
1 TCAAAGATTCTCATTTGAAGAC
37960 TCAAAGATTCTCATTT-AAGAC
1 TCAAAGATTCTCATTTGAAGAC
* *
37981 TCAGAGATTCTCATTT-AAAAC
1 TCAAAGATTCTCATTTGAAGAC
* **
38002 TCAAAGATTCTTATTTGCGGATTTC
1 TCAAAGATTCTCATTTGAAGA---C
* * *
38027 TTAAAAATTCTCATTT-AATAC
1 TCAAAGATTCTCATTTGAAGAC
38048 TCAAAGATTCTCATTT-AAGAC
1 TCAAAGATTCTCATTTGAAGAC
*
38069 TCAAAGATTCTCA-TTCAAGAC
1 TCAAAGATTCTCATTTGAAGAC
*
38090 TTAAAGATTCTCATTTGA
1 TCAAAGATTCTCATTTGA
38108 GGGTTCACAA
Statistics
Matches: 207, Mismatches: 23, Indels: 12
0.86 0.10 0.05
Matches are distributed among these distances:
20 2 0.01
21 86 0.42
22 104 0.50
24 1 0.00
25 14 0.07
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.36
Consensus pattern (22 bp):
TCAAAGATTCTCATTTGAAGAC
Found at i:38556 original size:63 final size:63
Alignment explanation
Indices: 38442--38939 Score: 422
Period size: 63 Copynumber: 7.9 Consensus size: 63
38432 TCCTCATCAT
* * * * * * * * * * *
38442 TTTCATCACTTGATCATCATTCATAGGCTTCTCAACATTAGCAAGTTT-AGAACAAGTTTTGTC
1 TTTCATCATTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCA-TTTCAGAACAAATTCTATC
* * * *
38505 TTTCATCATTTGGTCACCACTCACAAGCTTTTTAGCACTAGCCATTTTAGAACAAATT-TCATC
1 TTTCATCATTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTTCAGAACAAATTCT-ATC
* * * * * * *
38568 TTTCCTCATTTGGTCACTACTCACAGGCTTCTTAGCACTAGTCGTTTCAAAACAAATTCTGTC
1 TTTCATCATTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTTCAGAACAAATTCTATC
* * * ** *
38631 -TTCTATCACTTGGTCACCACTCATAAGCTTTTTAGCACTAGCTGTTCCAGAACAAATTCTAT-
1 TTTC-ATCATTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTTCAGAACAAATTCTATC
* * *
38693 TTTCTATCACTTGATCACCACTCATAGGCTTCTTAGCACTAGTCA-TTCTAGAACAAATT-TCAT
1 TTTC-ATCATTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTTC-AGAACAAATTCT-A-
38756 TC
62 TC
* * * * *
38758 TTT-ATCATTTGGTCACCACTCACAGGCTTTTTGGCATTAGCAATTTCA-AACAAATTCTATC
1 TTTCATCATTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTTCAGAACAAATTCTATC
* * * * * *
38819 -TTCTATCACTTT-GTCACCACCCATAGGCTTCTCAACACTATCCATTCCAAAACAAATTCTATC
1 TTTC-ATCA-TTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTTCAGAACAAATTCTATC
* * * * *
38882 TTTTATCACTTGGTCACCACTCATAGGCTTCTCAGCACTAGCCATTCCAGAATAAATT
1 TTTCATCATTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTTCAGAACAAATT
38940 TTGTCCATTA
Statistics
Matches: 353, Mismatches: 65, Indels: 34
0.78 0.14 0.08
Matches are distributed among these distances:
60 2 0.01
61 2 0.01
62 52 0.15
63 287 0.81
64 7 0.02
65 3 0.01
ACGTcount: A:0.28, C:0.26, G:0.10, T:0.36
Consensus pattern (63 bp):
TTTCATCATTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTTCAGAACAAATTCTATC
Found at i:38905 original size:188 final size:189
Alignment explanation
Indices: 38503--38940 Score: 569
Period size: 188 Copynumber: 2.3 Consensus size: 189
38493 ACAAGTTTTG
* * * * * *
38503 TCTTTCATCATTTGGTCACCACTCACAAGCTTTTTAGCACTAGCCATTTTAGAACAAATTTCATC
1 TCTTTTATCACTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTCTAGAACAAATTTCATC
* * * *
38568 TTTCCTCATTTGGTCACTACTCACAGGCTTCTTAGCACTAGTCGTTTCAAAACAAATTCTGTCTT
66 TTTCATCATTTGGTCACCACTCACAGGCTTCTTAGCACTAGTCATTTCAAAACAAATTCTATCTT
* * * * ** *
38633 CTATCACTTGGTCACCACTCATAAGCTTTTTAGCACTAGCTGTTCCAGAACAAATTCTA
131 CTATCACTTGGTCACCACCCATAAGCTTCTCAACACTAGCCATTCCAAAACAAATTCTA
* *
38692 T-TTTCTATCACTTGATCACCACTCATAGGCTTCTTAGCACTAGTCATTCTAGAACAAATTTCAT
1 TCTTT-TATCACTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTCTAGAACAAATTTCA-
* * *
38756 TCTTT-ATCATTTGGTCACCACTCACAGGCTTTTTGGCATTAG-CAATTTC-AAACAAATTCTAT
64 TCTTTCATCATTTGGTCACCACTCACAGGCTTCTTAGCACTAGTC-ATTTCAAAACAAATTCTAT
* * *
38818 CTTCTATCACTTTGTCACCACCCATAGGCTTCTCAACACTATCCATTCCAAAACAAATTCTA
128 CTTCTATCACTTGGTCACCACCCATAAGCTTCTCAACACTAGCCATTCCAAAACAAATTCTA
* * *
38880 TCTTTTATCACTTGGTCACCACTCATAGGCTTCTCAGCACTAGCCATTCCAGAATAAATTT
1 TCTTTTATCACTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTCTAGAACAAATTT
38941 TGTCCATTAC
Statistics
Matches: 215, Mismatches: 30, Indels: 9
0.85 0.12 0.04
Matches are distributed among these distances:
188 120 0.56
189 90 0.42
190 5 0.02
ACGTcount: A:0.27, C:0.27, G:0.10, T:0.36
Consensus pattern (189 bp):
TCTTTTATCACTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTCTAGAACAAATTTCATC
TTTCATCATTTGGTCACCACTCACAGGCTTCTTAGCACTAGTCATTTCAAAACAAATTCTATCTT
CTATCACTTGGTCACCACCCATAAGCTTCTCAACACTAGCCATTCCAAAACAAATTCTA
Found at i:40570 original size:19 final size:21
Alignment explanation
Indices: 40546--40593 Score: 64
Period size: 23 Copynumber: 2.3 Consensus size: 21
40536 GATAACAAAT
40546 GAAATCCT-ATTAC-ATAAAA
1 GAAATCCTAATTACTATAAAA
40565 GAAATCCTAACATTACTATAAAA
1 GAAATCCT-A-ATTACTATAAAA
40588 GAAATC
1 GAAATC
40594 TAGAATGACA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.32
22 5 0.20
23 12 0.48
ACGTcount: A:0.52, C:0.17, G:0.06, T:0.25
Consensus pattern (21 bp):
GAAATCCTAATTACTATAAAA
Found at i:41181 original size:33 final size:33
Alignment explanation
Indices: 41135--41245 Score: 97
Period size: 33 Copynumber: 3.4 Consensus size: 33
41125 TTAGTTTTAC
* *
41135 AATAAAT-TAAATAATTATTAATATTGATAGATA-
1 AATAAATAT-AATAATTATT-ATATTAATAAATAG
*
41168 AATAAATATAATAACTATTATA-TAATAAATAG
1 AATAAATATAATAATTATTATATTAATAAATAG
* *
41200 ATTAATATATAATAATTATTTATATTATTAAATA-
1 AATAA-ATATAATAATTA-TTATATTAATAAATAG
41234 ATATAAAT-TAAT
1 A-ATAAATATAAT
41246 TTATCTTTAA
Statistics
Matches: 65, Mismatches: 7, Indels: 12
0.77 0.08 0.14
Matches are distributed among these distances:
31 7 0.11
32 7 0.11
33 31 0.48
34 9 0.14
35 11 0.17
ACGTcount: A:0.55, C:0.01, G:0.03, T:0.41
Consensus pattern (33 bp):
AATAAATATAATAATTATTATATTAATAAATAG
Found at i:41475 original size:17 final size:17
Alignment explanation
Indices: 41453--41488 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
41443 TAATAGTATT
*
41453 ATTAAAATTTATGATAA
1 ATTAAAATTTATAATAA
41470 ATTAAAATTTATAATAA
1 ATTAAAATTTATAATAA
41487 AT
1 AT
41489 AATTAATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (17 bp):
ATTAAAATTTATAATAA
Found at i:41728 original size:17 final size:18
Alignment explanation
Indices: 41687--41731 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 18
41677 AAATTACAAG
41687 TACTTAAT-TT-ATAATT
1 TACTTAATATTAATAATT
*
41703 TAATTAATATTAATAA-T
1 TACTTAATATTAATAATT
41720 TACTTAATATTA
1 TACTTAATATTA
41732 TTAACATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 7 0.28
17 14 0.56
18 4 0.16
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.51
Consensus pattern (18 bp):
TACTTAATATTAATAATT
Found at i:41818 original size:17 final size:16
Alignment explanation
Indices: 41802--41872 Score: 58
Period size: 17 Copynumber: 4.4 Consensus size: 16
41792 AAATTAAATA
41802 TATATTATAATATAAT
1 TATATTATAATATAAT
*
41818 AAATATTAT-A-A-AAT
1 -TATATTATAATATAAT
*
41832 TATATTATTAATTTAAT
1 TATATTA-TAATATAAT
*
41849 TATATAATAATATTAAT
1 TATATTATAATA-TAAT
*
41866 TTTATTA
1 TATATTA
41873 AACAATTGAA
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
13 6 0.14
14 4 0.10
15 2 0.05
16 5 0.12
17 25 0.60
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
TATATTATAATATAAT
Found at i:42432 original size:19 final size:20
Alignment explanation
Indices: 42403--42446 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
42393 TAATTTATAT
*
42403 TAATTATAATAGATA-ATACA
1 TAATTATAATAAATAGATA-A
42423 TAATTA-AATAAATAGATAA
1 TAATTATAATAAATAGATAA
42442 TAATT
1 TAATT
42447 TATCATTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (20 bp):
TAATTATAATAAATAGATAA
Found at i:42454 original size:26 final size:26
Alignment explanation
Indices: 42390--42454 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 26
42380 ATCAAATTAT
*
42390 TAATAATTTATATTAATTATAATAGA
1 TAATAATTTATATTAAATATAATAGA
42416 TAATACA--TA-ATTAAATA-AATAGA
1 TAATA-ATTTATATTAAATATAATAGA
42439 TAATAATTTATCATTA
1 TAATAATTTAT-ATTA
42455 TTTTATAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
22 1 0.03
23 11 0.33
24 9 0.27
25 2 0.06
26 9 0.27
27 1 0.03
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (26 bp):
TAATAATTTATATTAAATATAATAGA
Found at i:43155 original size:16 final size:17
Alignment explanation
Indices: 43123--43155 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
43113 GACCAGTGCA
43123 AACAATTATGACTATTTG
1 AACAATTAT-ACTATTTG
43141 AACAATTAT-CTATTT
1 AACAATTATACTATTT
43156 CAAATTGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.42
Consensus pattern (17 bp):
AACAATTATACTATTTG
Found at i:43245 original size:181 final size:177
Alignment explanation
Indices: 42815--43394 Score: 535
Period size: 181 Copynumber: 3.2 Consensus size: 177
42805 ATAATATCAA
* * * * *
42815 TTTTGTCATAAAACAAATGTTTTTGTTCATATAAGTTTGTTTGGAATAAAATAATAT-TAATTTA
1 TTTTGTCATAAAACAATTGTTTTTGTTCATACAAGCTT-ATTCGAATAAAATAAT-TGTAATTTA
* * * *
42879 TTAATATTTCAAAAATTAATACGTAAAAGATTTAAAAA-GTAAATTTGTTTGCCAT-ATCAGTTC
64 TTAATATTTCAAAAATTAATAAGT-AAGGATTTAAAAATGT--ATTTG-TTGAC-TGACCAGTTC
* * * * * * ** * *
42942 -ATTAGTTATAACTATTTGACCAAATATTTATTTCAAATCATTATGATCATTTG
124 AAATAATTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTG
* * * ** *
42995 TTTTATCATAAAACAATTGTTGTTGTTCATATAATTTTATTCGAAATAAAATAA-TGCTAATTAA
1 TTTTGTCATAAAACAATTGTTTTTGTTCATACAAGCTTATTCG-AATAAAATAATTG-TAATTTA
** * *
43059 TTAATATTTTGAAAATTAATAAGTAATGGATTTAGAAAATGTATTTGTTGGCTTGACCAGTGCAA
64 TTAATATTTCAAAAATTAATAAGTAA-GGATTTA-AAAATGTATTTGTTGAC-TGACCAGTTCAA
*
43124 ACAATTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTG
126 ATAATTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTG
* * *
43176 TTTTCTCACAAAACAATTGTTTTTGTTCATACAAGCTTATTCAGAATAACATAATTGTAATTTAT
1 TTTTGTCATAAAACAATTGTTTTTGTTCATACAAGCTTATTC-GAATAAAATAATTGTAATTTAT
* * * * * *
43241 TAATATTCCAAAAATTACTAAGTGAGAGATTTTAAAAATGAATTTGTTTACTGAACAAGTTCAAA
65 TAATATTTCAAAAATTAATAAGTAAG-GA-TTTAAAAATGTATTTGTTGACTG-ACCAGTTCAAA
* * * * *
43306 TAATTATGGCTATTTGAACAATTATCTACTTCAAATTGCTATAACCTTATG
127 TAATTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTG
* *
43357 TATTGTCAT-AAATAATT-TTCTTCTGTTCATACAAGCTT
1 TTTTGTCATAAAACAATTGTT-TT-TGTTCATACAAGCTT
43395 GTTGCAAATC
Statistics
Matches: 331, Mismatches: 54, Indels: 29
0.80 0.13 0.07
Matches are distributed among these distances:
178 1 0.00
179 12 0.04
180 100 0.30
181 209 0.63
182 9 0.03
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.42
Consensus pattern (177 bp):
TTTTGTCATAAAACAATTGTTTTTGTTCATACAAGCTTATTCGAATAAAATAATTGTAATTTATT
AATATTTCAAAAATTAATAAGTAAGGATTTAAAAATGTATTTGTTGACTGACCAGTTCAAATAAT
TATGACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTG
Found at i:43670 original size:181 final size:179
Alignment explanation
Indices: 43400--43798 Score: 478
Period size: 181 Copynumber: 2.2 Consensus size: 179
43390 AGCTTGTTGC
* * * * * *
43400 AAATCTGTTTACCAAATAATTTTAAATAGTTATAACTATTAACAATTATTTATTTCAAATAGTTA
1 AAATCTGTTTACCAAACAAGTTCAAATAGTAATAACTATGAACAATTATCTATTTCAAATAGTTA
* * * * *** *
43465 TGACCTTTTGTTTTGTCATAAAACAATTATTTTTGTTCATATTA-GCTTATTC-AAATTAAAATA
66 TAACCTTTTGTTTCGCCATAAAACAATTATATCAATTCACA-TAGGCTTATTCGAAA-TAAAATA
* * * * *
43528 ATATTAATTTATTAATATTTCAACAATTAATAAGTAAAAGATTTAAAAAAT
129 ACACTAACTTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAAT
* * * *
43579 AAATATGTTTACCGAACAAGTTCAAATAGTAATAACTAGCTGAATAATTATCTATTTCAAATCGT
1 AAATCTGTTTACCAAACAAGTTCAAATAGTAATAACTA--TGAACAATTATCTATTTCAAATAGT
43644 TATAACCTTTTGTTTCGCCATAAAACAATTATATCAATTCACATAGGCTTATTCGAAATAAAATA
64 TATAACCTTTTGTTTCGCCATAAAACAATTATATCAATTCACATAGGCTTATTCGAAATAAAATA
* * *
43709 ACACTAACTTATTACTATTCCAAAAATTAATGAGTAAGAGATTTAAAAAAT
129 ACACTAACTTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAAT
* * * *
43760 GAATCTATTTACCAAACAAGTTCAAATAGTTATGACTAT
1 AAATCTGTTTACCAAACAAGTTCAAATAGTAATAACTAT
43799 TTATATTATA
Statistics
Matches: 184, Mismatches: 32, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
179 33 0.18
180 2 0.01
181 146 0.79
182 3 0.02
ACGTcount: A:0.43, C:0.12, G:0.08, T:0.38
Consensus pattern (179 bp):
AAATCTGTTTACCAAACAAGTTCAAATAGTAATAACTATGAACAATTATCTATTTCAAATAGTTA
TAACCTTTTGTTTCGCCATAAAACAATTATATCAATTCACATAGGCTTATTCGAAATAAAATAAC
ACTAACTTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAAT
Found at i:46031 original size:16 final size:16
Alignment explanation
Indices: 45994--46041 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
45984 TATTAATATT
45994 TATAATATTACTAATAA
1 TATAATATTA-TAATAA
**
46011 T-TAATATTATTGTAA
1 TATAATATTATAATAA
46026 TATAATAATTATAATA
1 TATAAT-ATTATAATA
46042 TTTTTATAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 5 0.20
16 12 0.48
17 8 0.32
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (16 bp):
TATAATATTATAATAA
Found at i:46356 original size:19 final size:18
Alignment explanation
Indices: 46332--46370 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
46322 TGTTTGAAAT
*
46332 ATTAATACTTAATATTTTA
1 ATTAATAATTAAT-TTTTA
*
46351 ATTAATAATTTATTTTTA
1 ATTAATAATTAATTTTTA
46369 AT
1 AT
46371 AAAATAACGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTAATAATTAATTTTTA
Found at i:47244 original size:24 final size:23
Alignment explanation
Indices: 47205--47267 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 23
47195 TAATTATGTT
*
47205 TATTTAATTATATATATAATATTAAT
1 TATTT-ATTA-ATATATAAT-TTAAA
*
47231 TA-TTATTAAGTATATTATTTAAA
1 TATTTATTAA-TATATAATTTAAA
47254 TATTTATTAATATA
1 TATTTATTAATATA
47268 CATAATTATA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
23 11 0.33
24 18 0.55
25 2 0.06
26 2 0.06
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (23 bp):
TATTTATTAATATATAATTTAAA
Found at i:47248 original size:12 final size:11
Alignment explanation
Indices: 47218--47267 Score: 50
Period size: 12 Copynumber: 4.5 Consensus size: 11
47208 TTAATTATAT
*
47218 ATATAATATTA
1 ATATATTATTA
47229 AT-TATTATTA
1 ATATATTATTA
47239 AGTATATTATTTA
1 A-TATATTA-TTA
47252 A-ATATTTATTA
1 ATATA-TTATTA
47263 ATATA
1 ATATA
47268 CATAATTATA
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
10 8 0.24
11 10 0.30
12 11 0.33
13 4 0.12
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (11 bp):
ATATATTATTA
Found at i:47496 original size:13 final size:12
Alignment explanation
Indices: 47460--47517 Score: 52
Period size: 10 Copynumber: 5.0 Consensus size: 12
47450 TTAATTAATT
47460 TAATA-ATTAT-
1 TAATATATTATA
47470 TAATATATTCATA
1 TAATATATT-ATA
47483 TAATTATATTATA
1 TAA-TATATTATA
*
47496 TAA-AT-TTAAA
1 TAATATATTATA
*
47506 TAGTATATTATA
1 TAATATATTATA
47518 ATTATTATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
10 11 0.28
11 7 0.18
12 6 0.15
13 9 0.23
14 6 0.15
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (12 bp):
TAATATATTATA
Found at i:47551 original size:19 final size:17
Alignment explanation
Indices: 47517--47587 Score: 61
Period size: 19 Copynumber: 3.8 Consensus size: 17
47507 AGTATATTAT
47517 AATTATTATATTAAATA
1 AATTATTATATTAAATA
47534 AATTATTAGTAGTTAAATTA
1 AATTATTA-TA-TTAAA-TA
* *
47554 ATTGTATTAATTATAAAATA
1 AAT-TATT-A-TATTAAATA
47574 AATTATTAATATTA
1 AATTATT-ATATTA
47588 TTTCAAATAA
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
17 8 0.18
18 6 0.14
19 11 0.25
20 8 0.18
21 8 0.18
22 3 0.07
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.46
Consensus pattern (17 bp):
AATTATTATATTAAATA
Found at i:47649 original size:15 final size:15
Alignment explanation
Indices: 47629--47671 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
47619 ATTTTTACTA
47629 TAATTAATAATATAT
1 TAATTAATAATATAT
47644 TAATT-ATAAATATAT
1 TAATTAAT-AATATAT
*
47659 T-ATAAATAATATA
1 TAATTAATAATATA
47672 ATTATCTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
TAATTAATAATATAT
Found at i:47792 original size:19 final size:18
Alignment explanation
Indices: 47759--47797 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
47749 TAATTAAGTG
*
47759 TAATAATAAATACTATAT
1 TAATAAGAAATACTATAT
47777 TAATAAGAAGATACTATAT
1 TAATAAGAA-ATACTATAT
47796 TA
1 TA
47798 TAGTATTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (18 bp):
TAATAAGAAATACTATAT
Found at i:48068 original size:15 final size:16
Alignment explanation
Indices: 48035--48077 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
48025 TTATTACATG
* *
48035 TATTATAAATTATTTA
1 TATTATAAATTAATAA
48051 TATT-TAAATTAATAA
1 TATTATAAATTAATAA
*
48066 TATTATTAATTA
1 TATTATAAATTA
48078 TAACTAAACA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 13 0.57
16 10 0.43
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TATTATAAATTAATAA
Found at i:49484 original size:25 final size:25
Alignment explanation
Indices: 49450--49538 Score: 151
Period size: 25 Copynumber: 3.6 Consensus size: 25
49440 TCTGAGTCAT
49450 AAATGAGAATCTTTAAGAAATCCTC
1 AAATGAGAATCTTTAAGAAATCCTC
* *
49475 AAATGAGAATCGTTAAGAAATCCTT
1 AAATGAGAATCTTTAAGAAATCCTC
49500 AAATGAGAATCTTTAAGAAATCCTC
1 AAATGAGAATCTTTAAGAAATCCTC
*
49525 AAATAAGAATCTTT
1 AAATGAGAATCTTT
49539 GAGTCATCTA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 59 1.00
ACGTcount: A:0.45, C:0.13, G:0.12, T:0.29
Consensus pattern (25 bp):
AAATGAGAATCTTTAAGAAATCCTC
Found at i:49515 original size:14 final size:14
Alignment explanation
Indices: 49449--49535 Score: 57
Period size: 12 Copynumber: 6.9 Consensus size: 14
49439 ATCTGAGTCA
49449 TAAATGAGAAT-CT
1 TAAATGAGAATCCT
*
49462 TTAA-GA-AATCCT
1 TAAATGAGAATCCT
* *
49474 CAAATGAGAATCGT
1 TAAATGAGAATCCT
49488 T-AA-GA-AATCCT
1 TAAATGAGAATCCT
49499 TAAATGAGAAT-CT
1 TAAATGAGAATCCT
*
49512 TTAA-GA-AATCCT
1 TAAATGAGAATCCT
* *
49524 CAAATAAGAATC
1 TAAATGAGAATC
49536 TTTGAGTCAT
Statistics
Matches: 55, Mismatches: 10, Indels: 17
0.67 0.12 0.21
Matches are distributed among these distances:
11 12 0.22
12 16 0.29
13 15 0.27
14 12 0.22
ACGTcount: A:0.46, C:0.14, G:0.13, T:0.28
Consensus pattern (14 bp):
TAAATGAGAATCCT
Found at i:49558 original size:22 final size:22
Alignment explanation
Indices: 49426--49628 Score: 110
Period size: 22 Copynumber: 9.0 Consensus size: 22
49416 AGTTAATAAA
*
49426 TCTTCAAATGAAAATC--TGAG
1 TCTTCAAATGAGAATCTTTGAG
* *
49446 TCAT-AAATGAGAATCTTTAAGAAA
1 TCTTCAAATGAGAATCTTT--G-AG
* * *
49470 TCCTCAAATGAGAATCGTTAAGAAA
1 TCTTCAAATGAGAATC-TT-TG-AG
*
49495 TCCTT-AAATGAGAATCTTTAAGAAA
1 T-CTTCAAATGAGAATCTTT--G-AG
* *
49520 TCCTCAAATAAGAATCTTTGAG
1 TCTTCAAATGAGAATCTTTGAG
* * * *
49542 TCATCTAGTGAGAATCTTTGAA
1 TCTTCAAATGAGAATCTTTGAG
* *
49564 TCTTCAAATAAGAATATTTGAG
1 TCTTCAAATGAGAATCTTTGAG
*
49586 TTTTCAAATGAGAATCTTTGAG
1 TCTTCAAATGAGAATCTTTGAG
* * *
49608 T-TTTAAATAAGAATTTTTGAG
1 TCTTCAAATGAGAATCTTTGAG
49629 ATTTGAAACC
Statistics
Matches: 144, Mismatches: 27, Indels: 23
0.74 0.14 0.12
Matches are distributed among these distances:
19 10 0.07
20 3 0.02
21 18 0.12
22 54 0.38
23 2 0.01
24 8 0.06
25 45 0.31
26 4 0.03
ACGTcount: A:0.40, C:0.11, G:0.15, T:0.34
Consensus pattern (22 bp):
TCTTCAAATGAGAATCTTTGAG
Found at i:49577 original size:44 final size:44
Alignment explanation
Indices: 49500--49628 Score: 143
Period size: 44 Copynumber: 2.9 Consensus size: 44
49490 AGAAATCCTT
* *
49500 AAATGAGAATCTTTAAGAAATCCTCAAATAAGAATCTTTGAGTCATC
1 AAATGAGAATCTTT--G-AATCTTCAAATAAGAATATTTGAGTCATC
* * **
49547 TAGTGAGAATCTTTGAATCTTCAAATAAGAATATTTGAGTTTTC
1 AAATGAGAATCTTTGAATCTTCAAATAAGAATATTTGAGTCATC
* * *
49591 AAATGAGAATCTTTGAGT-TTTAAATAAGAATTTTTGAG
1 AAATGAGAATCTTTGAATCTTCAAATAAGAATATTTGAG
49629 ATTTGAAACC
Statistics
Matches: 71, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
43 18 0.25
44 40 0.56
45 1 0.01
47 12 0.17
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (44 bp):
AAATGAGAATCTTTGAATCTTCAAATAAGAATATTTGAGTCATC
Found at i:50140 original size:41 final size:42
Alignment explanation
Indices: 50054--50153 Score: 103
Period size: 43 Copynumber: 2.3 Consensus size: 42
50044 TCAAGGAGCT
* * * *
50054 TTTA-TTTTTCAAAGTTGTTGTGCCTCTGTTTAGAGGAGTCA
1 TTTATTTTTTCAAAGTGGTTGAGCCTCTATTTAGAGAAGTCA
* *
50095 TTTATTTTTCTCAAAGTGGTTGAGCCTTTATTTAGAGAAGCTTTA
1 TTTATTTTT-TCAAAGTGGTTGAGCCTCTATTTAGAGAAG--TCA
*
50140 TTTACTTTTTCAAA
1 TTTATTTTTTCAAA
50154 AAAAAAATGT
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
41 4 0.08
42 4 0.08
43 25 0.52
44 5 0.10
45 10 0.21
ACGTcount: A:0.23, C:0.12, G:0.17, T:0.48
Consensus pattern (42 bp):
TTTATTTTTTCAAAGTGGTTGAGCCTCTATTTAGAGAAGTCA
Found at i:51367 original size:52 final size:54
Alignment explanation
Indices: 51222--51364 Score: 200
Period size: 54 Copynumber: 2.7 Consensus size: 54
51212 AAAAGAGAAA
* * *
51222 AAAAAATTTCTAAATAGGCCCAAATGGTGAAAAATTTAGAAATTTCAAAAAGAG
1 AAAATATTTCTAAATTGGCCCAAATGGTGGAAAATTTAGAAATTTCAAAAAGAG
* *
51276 AAAATATTTCTAAATTGACCTAAATGGTGGAAAATTTAGAAA-TTC-AAAAGAG
1 AAAATATTTCTAAATTGGCCCAAATGGTGGAAAATTTAGAAATTTCAAAAAGAG
* *
51328 AAAATATTTCTAATTTGGCCCAAATAGTGGAATAATT
1 AAAATATTTCTAAATTGGCCCAAATGGTGGAA-AATT
51365 AGATATATTT
Statistics
Matches: 79, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
52 35 0.44
53 7 0.09
54 37 0.47
ACGTcount: A:0.48, C:0.09, G:0.15, T:0.29
Consensus pattern (54 bp):
AAAATATTTCTAAATTGGCCCAAATGGTGGAAAATTTAGAAATTTCAAAAAGAG
Found at i:51676 original size:9 final size:9
Alignment explanation
Indices: 51662--51686 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
51652 TTTTAGTTTG
51662 TATAATTAC
1 TATAATTAC
51671 TATAATTAC
1 TATAATTAC
51680 TATAATT
1 TATAATT
51687 TTATTATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (9 bp):
TATAATTAC
Found at i:51762 original size:19 final size:18
Alignment explanation
Indices: 51737--51781 Score: 54
Period size: 20 Copynumber: 2.4 Consensus size: 18
51727 TATATTTATA
*
51737 TTATAATATATATTTAAT
1 TTATAATATATATTAAAT
*
51755 TGTATAATTATTTATTAAAT
1 T-TATAA-TATATATTAAAT
51775 TTATAAT
1 TTATAAT
51782 TTTGGGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 2 0.09
19 10 0.43
20 11 0.48
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (18 bp):
TTATAATATATATTAAAT
Found at i:51782 original size:19 final size:19
Alignment explanation
Indices: 51737--51782 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
51727 TATATTTATA
*
51737 TTATAA-TATATATTTAAT
1 TTATAATTATATATTAAAT
*
51755 TGTATAATTATTTATTAAAT
1 T-TATAATTATATATTAAAT
51775 TTATAATT
1 TTATAATT
51783 TTGGGAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 1 0.04
19 12 0.50
20 11 0.46
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (19 bp):
TTATAATTATATATTAAAT
Found at i:52082 original size:18 final size:17
Alignment explanation
Indices: 52038--52092 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 17
52028 TTTTTAAACA
*
52038 ATTAATAATTAAAA-AT
1 ATTATTAATTAAAATAT
*
52054 ATTTTTTAATTAAAATAGT
1 A-TTATTAATTAAAATA-T
*
52073 ATTATTAATTATAATA-
1 ATTATTAATTAAAATAT
52089 ATTA
1 ATTA
52093 AATATTATTA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
16 5 0.16
17 11 0.34
18 14 0.44
19 2 0.06
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (17 bp):
ATTATTAATTAAAATAT
Found at i:52116 original size:26 final size:27
Alignment explanation
Indices: 52059--52117 Score: 77
Period size: 26 Copynumber: 2.2 Consensus size: 27
52049 AAAATATTTT
52059 TTAATTAAAATAGTATTATTAATTATA
1 TTAATTAAAATAGTATTATTAATTATA
* *
52086 ATAATT-AAATATTATTATT-ATTATTA
1 TTAATTAAAATAGTATTATTAATTA-TA
52112 TTAATT
1 TTAATT
52118 TTAAATAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 4 0.14
26 19 0.68
27 5 0.18
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (27 bp):
TTAATTAAAATAGTATTATTAATTATA
Found at i:52452 original size:16 final size:14
Alignment explanation
Indices: 52441--52525 Score: 56
Period size: 16 Copynumber: 6.1 Consensus size: 14
52431 TAATAATATA
52441 AATATATTATAATT
1 AATATATTATAATT
52455 AATGA-ATATATAATTT
1 AAT-ATAT-TATAA-TT
52471 AATATATTATAAGATTT
1 AATATATTAT-A-A-TT
* *
52488 AATA-AATATAGTT
1 AATATATTATAATT
52501 AAT-TATTATAA--
1 AATATATTATAATT
52512 AATATATTA-AATT
1 AATATATTATAATT
52525 A
1 A
52526 TAATAATATT
Statistics
Matches: 57, Mismatches: 4, Indels: 21
0.70 0.05 0.26
Matches are distributed among these distances:
11 5 0.09
12 5 0.09
13 11 0.19
14 5 0.09
15 11 0.19
16 12 0.21
17 8 0.14
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.45
Consensus pattern (14 bp):
AATATATTATAATT
Found at i:52511 original size:19 final size:19
Alignment explanation
Indices: 52438--52531 Score: 62
Period size: 20 Copynumber: 5.2 Consensus size: 19
52428 AATTAATAAT
52438 ATAAATATATTATAA-T-TA
1 ATAAATATATTA-AATTATA
*
52456 ATGAATATA-T-AATT-TA
1 ATAAATATATTAAATTATA
*
52472 ATATAT-TA-TAAGATT-TA
1 ATAAATATATTAA-ATTATA
*
52489 ATAAATATAGTT-AATTATT
1 ATAAATATA-TTAAATTATA
52508 ATAAAATATATTAAATTATA
1 AT-AAATATATTAAATTATA
52528 ATAA
1 ATAA
52532 TATTAACATG
Statistics
Matches: 61, Mismatches: 6, Indels: 17
0.73 0.07 0.20
Matches are distributed among these distances:
15 5 0.08
16 8 0.13
17 11 0.18
18 13 0.21
19 8 0.13
20 16 0.26
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (19 bp):
ATAAATATATTAAATTATA
Found at i:52537 original size:16 final size:17
Alignment explanation
Indices: 52491--52534 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 17
52481 AAGATTTAAT
52491 AAATATAGTTAATTATTATA
1 AAATATA-TTAA--ATTATA
52511 AAATATATTAAATTATA
1 AAATATATTAAATTATA
52528 ATAATAT
1 A-AATAT
52535 TAACATGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 7 0.30
18 5 0.22
19 4 0.17
20 7 0.30
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (17 bp):
AAATATATTAAATTATA
Done.