Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168491.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_89, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101268
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Warning! 1000 characters in sequence are not A, C, G, or T
File 2 of 3
Found at i:52590 original size:15 final size:16
Alignment explanation
Indices: 52572--52605 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
52562 ATTATAATAC
52572 AATTAAATTAA-TATT
1 AATTAAATTAATTATT
*
52587 AATTATATTAATTATT
1 AATTAAATTAATTATT
52603 AAT
1 AAT
52606 ATTTAGTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
AATTAAATTAATTATT
Found at i:52643 original size:15 final size:15
Alignment explanation
Indices: 52623--52694 Score: 53
Period size: 15 Copynumber: 5.0 Consensus size: 15
52613 ATTCAATACA
*
52623 TTTAATTTAATTAAT
1 TTTAATTAAATTAAT
*
52638 TTTAATTAAATTAAA
1 TTTAATTAAATTAAT
* *
52653 TCT-ATT-CATT-AT
1 TTTAATTAAATTAAT
*
52665 CTTTAATT-AATAAAT
1 -TTTAATTAAATTAAT
*
52680 ATTAATTAAATTAAT
1 TTTAATTAAATTAAT
52695 GTAACTATAA
Statistics
Matches: 43, Mismatches: 10, Indels: 8
0.70 0.16 0.13
Matches are distributed among these distances:
12 1 0.02
13 5 0.12
14 14 0.33
15 23 0.53
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.51
Consensus pattern (15 bp):
TTTAATTAAATTAAT
Found at i:54032 original size:25 final size:25
Alignment explanation
Indices: 53984--54061 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
53974 TAATAAATTT
*
53984 TATTTTATATAAATT-TA-T-TCAAA
1 TATTTTATAT-AATTATAGTATTAAA
54007 TATTTTATATAATTATAGTATTAAA
1 TATTTTATATAATTATAGTATTAAA
** *
54032 TATTATTA-ATAAAAATAGTAATAATA
1 TATT-TTATATAATTATAGTATTAA-A
54058 TATT
1 TATT
54062 ACTTAATTAA
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
22 4 0.09
23 12 0.26
24 1 0.02
25 21 0.46
26 8 0.17
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.49
Consensus pattern (25 bp):
TATTTTATATAATTATAGTATTAAA
Found at i:54077 original size:21 final size:20
Alignment explanation
Indices: 54052--54090 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
54042 AAAAATAGTA
54052 ATAATATATTACTTAATTAAT
1 ATAATATA-TACTTAATTAAT
*
54073 ATAATATATATTTAATTA
1 ATAATATATACTTAATTA
54091 TAACATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
ATAATATATACTTAATTAAT
Found at i:54409 original size:27 final size:27
Alignment explanation
Indices: 54385--54479 Score: 81
Period size: 27 Copynumber: 3.6 Consensus size: 27
54375 CTATTATACT
54385 TAAATATAATAT-ATT-GTTATTTATA
1 TAAATATAATATAATTAGTTATTTATA
* *
54410 TAAATATATTATAATTATTTATTTATA
1 TAAATATAATATAATTAGTTATTTATA
* * *
54437 TATATAATTATATAATTATATTATTTA-A
1 TAAAT-ATAATATAATTA-GTTATTTATA
*
54465 TTAAT-TAATAATAAT
1 TAAATATAAT-ATAAT
54480 ATATGATACT
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
25 11 0.20
26 6 0.11
27 18 0.32
28 14 0.25
29 7 0.12
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (27 bp):
TAAATATAATATAATTAGTTATTTATA
Found at i:54431 original size:23 final size:20
Alignment explanation
Indices: 54401--54482 Score: 60
Period size: 21 Copynumber: 4.0 Consensus size: 20
54391 TAATATATTG
54401 TTATTTATATAAATATATTATAA
1 TTATTTAT-T-AATATA-TATAA
*
54424 TTATTTATTTATATATATAA
1 TTATTTATTAATATATATAA
* *
54444 TTATATAATT-ATATTATTTAA
1 TTAT-TTATTAATA-TATATAA
* *
54465 TTAATTAATAATA-ATATA
1 TTATTTATTAATATATATA
54483 TGATACTATA
Statistics
Matches: 49, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
19 4 0.08
20 15 0.31
21 21 0.43
22 1 0.02
23 8 0.16
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
TTATTTATTAATATATATAA
Found at i:54901 original size:7 final size:8
Alignment explanation
Indices: 54883--54923 Score: 50
Period size: 7 Copynumber: 5.1 Consensus size: 8
54873 TAATAATATA
54883 TTAATAAT
1 TTAATAAT
54891 TTAAT-AT
1 TTAATAAT
54898 TTAATAAT
1 TTAATAAT
54906 TTATTATAA-
1 TTA--ATAAT
54915 TTAATAAT
1 TTAATAAT
54923 T
1 T
54924 ATTTATATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
7 11 0.38
8 11 0.38
9 3 0.10
10 4 0.14
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (8 bp):
TTAATAAT
Found at i:54910 original size:26 final size:24
Alignment explanation
Indices: 54872--54920 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
54862 TACAAATTAA
54872 TTAATAATATATTAATAATTTAATAT
1 TTAATAATATATT-ATAA-TTAATAT
*
54898 TTAATAATTTATTATAATTAATA
1 TTAATAATATATTATAATTAATA
54921 ATTATTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.27
25 4 0.18
26 12 0.55
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
TTAATAATATATTATAATTAATAT
Found at i:55324 original size:14 final size:15
Alignment explanation
Indices: 55298--55326 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
55288 ATATTTATTT
55298 TTAATATAATAATTG
1 TTAATATAATAATTG
55313 TTAATA-AATAATTG
1 TTAATATAATAATTG
55327 ATTTAAGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (15 bp):
TTAATATAATAATTG
Found at i:56091 original size:12 final size:12
Alignment explanation
Indices: 56074--56098 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
56064 ATGATAAACT
56074 TATTTTAATTAA
1 TATTTTAATTAA
56086 TATTTTAATTAA
1 TATTTTAATTAA
56098 T
1 T
56099 TAATTAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TATTTTAATTAA
Found at i:56461 original size:13 final size:14
Alignment explanation
Indices: 56413--56475 Score: 60
Period size: 14 Copynumber: 4.6 Consensus size: 14
56403 CTAATTATCG
*
56413 TAATAATAATATGT
1 TAATAATAATATAT
* *
56427 CAATATTACA-ATAAT
1 TAATAATA-ATAT-AT
56442 T-ATAATAATAT-T
1 TAATAATAATATAT
56454 TAATAATAATATAT
1 TAATAATAATATAT
56468 TAATAATA
1 TAATAATA
56476 TTAATCTTAA
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
12 2 0.05
13 11 0.28
14 24 0.62
15 2 0.05
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (14 bp):
TAATAATAATATAT
Found at i:56476 original size:24 final size:23
Alignment explanation
Indices: 56436--56502 Score: 75
Period size: 24 Copynumber: 2.9 Consensus size: 23
56426 TCAATATTAC
56436 AATAATTA-TAATAATATTTAAT
1 AATAATTATTAATAATATTTAAT
56458 AATAATATATTAATAATA-TTAAT
1 AATAAT-TATTAATAATATTTAAT
**
56481 CTTAATTTAATTAATAATATTT
1 AATAA-TT-ATTAATAATATTT
56503 CAAACTCTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
22 6 0.16
23 11 0.29
24 19 0.50
25 2 0.05
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (23 bp):
AATAATTATTAATAATATTTAAT
Found at i:56807 original size:15 final size:15
Alignment explanation
Indices: 56789--56818 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
56779 ATTCTAATCT
*
56789 ATTATAATTATAATA
1 ATTATAATTACAATA
56804 ATTATAATTACAATA
1 ATTATAATTACAATA
56819 TTACAAAAGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (15 bp):
ATTATAATTACAATA
Found at i:57638 original size:180 final size:179
Alignment explanation
Indices: 57070--57641 Score: 579
Period size: 180 Copynumber: 3.2 Consensus size: 179
57060 TTAATAAGAC
* * * * *
57070 AATTAACAAGTAAAAGATTTAAAAAATAAATCTATTTATTGAACAAATTCAAATCGTTATGACTA
1 AATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTATCGAACAAATTCAAATAGTTATGACTA
* * * *
57135 TCTAAATAATTATTTATTTCAAATTC-TTATGACTTTTTTGTTTTGTCATAAAACAATTGTTTCT
66 TCTTAATAATTATCTATTTCAAA-TCATTATAAC-ATTTTGTTTTGTCATAAAACAATTGTTTCT
* * * ** * * * *
57199 ATCCATATGAGTTTATTCGGATTAAAATAATATTGATTTATTAATATTTCAAC
129 ATTCATATAAGCTTATT-TAAATAAAATAATA-TAATTTATTAATATTCCAAA
* * * * * * *
57252 AATTAATAAATAAAAGCCTTTTAAAAAAT-AA-GT-TTTACCAAACAAGTTCAAATAGTCATGAC
1 AATTAATAAGTAAAAG--ATTTAAAAAATAAATATGTTTATCGAACAAATTCAAATAGTTATGAC
* * *
57314 TAT-TTGAATAATTATCTACTTCAAATCATTGTAACATTTTGTTTTGTAATAAAACAATTGTTTC
64 TATCTT-AATAATTATCTATTTCAAATCATTATAACATTTTGTTTTGTCATAAAACAATTGTTTC
* * *
57378 AATTCATGTTAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCC-AA
128 TATTCATATAAGCTTATTT-AAATAAAATAATA-TAATTTATTAATATTCCAAA
* * * * *
57431 AATTAAAAAGTAAGAGAATTAAAAAATAAATATGTTTATCGAACAATTTCAAATAGTTATAACTA
1 AATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTATCGAACAAATTCAAATAGTTATGACTA
* * *
57496 TCTTAATAATTATCTATTTCAAAACATTACAACCTTTTGTTTTGTCATAAAACAATTG-TTCTAT
66 TCTTAATAATTATCTATTTCAAATCATTATAACATTTTGTTTTGTCATAAAACAATTGTTTCTAT
*
57560 TCAT-TCAAGCTTATTTAAAAAATAATAATATAAATTTATTAATGA-TCCAAA
131 TCATAT-AAGCTTATTTAAATAA-AATAATAT-AATTTATTAAT-ATTCCAAA
*
57611 AATTAATAAGTAAAA-ATTTTTAAAAATAAAT
1 AATTAATAAGTAAAAGA-TTTAAAAAATAAAT
57642 TTATTTAAAA
Statistics
Matches: 322, Mismatches: 53, Indels: 32
0.79 0.13 0.08
Matches are distributed among these distances:
177 9 0.03
178 9 0.03
179 55 0.17
180 172 0.53
181 50 0.16
182 15 0.05
183 2 0.01
184 10 0.03
ACGTcount: A:0.44, C:0.10, G:0.07, T:0.40
Consensus pattern (179 bp):
AATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTATCGAACAAATTCAAATAGTTATGACTA
TCTTAATAATTATCTATTTCAAATCATTATAACATTTTGTTTTGTCATAAAACAATTGTTTCTAT
TCATATAAGCTTATTTAAATAAAATAATATAATTTATTAATATTCCAAA
Found at i:60072 original size:15 final size:15
Alignment explanation
Indices: 60054--60102 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
60044 TAACAATTGC
60054 AATAATTTAATATTA
1 AATAATTTAATATTA
* *
60069 AATATTTTATTATTA
1 AATAATTTAATATTA
*
60084 AAT-ATATAATCATTA
1 AATAATTTAAT-ATTA
60099 AATA
1 AATA
60103 GATAATATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
14 4 0.15
15 23 0.85
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
AATAATTTAATATTA
Found at i:60612 original size:19 final size:18
Alignment explanation
Indices: 60581--60616 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
60571 AAAATTAAAC
*
60581 AATATATATTTTTATTAT
1 AATATATAATTTTATTAT
60599 AATATTATAATTTTATTA
1 AATA-TATAATTTTATTA
60617 CGTACTTGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
AATATATAATTTTATTAT
Found at i:61098 original size:24 final size:26
Alignment explanation
Indices: 61050--61098 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 26
61040 ACAGTATAAC
*
61050 CAATATACTTAAAAGTTAATCTTAAA
1 CAATATACTTAAAAGTTAATATTAAA
*
61076 CAATATA-TTTAAAG-TAATATTAA
1 CAATATACTTAAAAGTTAATATTAA
61099 TTATTAATTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 8 0.38
25 6 0.29
26 7 0.33
ACGTcount: A:0.51, C:0.08, G:0.04, T:0.37
Consensus pattern (26 bp):
CAATATACTTAAAAGTTAATATTAAA
Found at i:61757 original size:19 final size:19
Alignment explanation
Indices: 61729--61769 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
61719 ATAATTTTCA
* *
61729 AAATATTATTAACTATTTT
1 AAATAATATTAACTATTAT
*
61748 AAATAATATTTACTATTAT
1 AAATAATATTAACTATTAT
61767 AAA
1 AAA
61770 CAACAATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (19 bp):
AAATAATATTAACTATTAT
Found at i:61963 original size:6 final size:6
Alignment explanation
Indices: 61952--61981 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
61942 ATTCGAATCT
*
61952 ATTATA ATTATA ATAATA ATTATA ATTATA
1 ATTATA ATTATA ATTATA ATTATA ATTATA
61982 TATATTAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (6 bp):
ATTATA
Found at i:62756 original size:182 final size:177
Alignment explanation
Indices: 62244--62813 Score: 602
Period size: 182 Copynumber: 3.2 Consensus size: 177
62234 TTAATAAGAT
* * * *
62244 AATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTATCAACAAATTTCAAATCGTTATGACTA
1 AATTAATAAGTAAAA-ATTTAAAAAATAAATATGTTTATC-A-AAAGTTCAAATAGTTATGACTA
* * * *
62309 TCTAAATAATTATTTATTTCAAATTC-TTATGACTTTTTTGTTTT-TCCATAAAA-AATTG-TTC
63 TCTTAATAATTATCTATTTCAAA-TCATTATAAC-ATTTTGTTTTGT-CATAAAACAATTGTTTC
* * * * * * *
62370 TATCCATACGAGCTTA-TTCGAATTAAAATAATATTGATTTATTAATATTTCAAC
125 TATTCATTCAAGCTTATTTC-AAATAAAATAATA-TAATTTATTAATATTCCAAA
* * * * *
62424 AATTAATAAGTAAAAGATTTTAAAAAT--ATAAG-TTACCAACAGTTCAAATAGTCCATGACTAT
1 AATTAATAAGTAAAA-ATTTAAAAAATAAATATGTTTATCAAAAGTTCAAATAGT-TATGACTAT
* * *
62486 -TTGAATAATTATCTACTTTCAAATCATTGTAACATTTTGTTTTGTAATAAAACAATTGTTTCAA
64 CTT-AATAATTATCTA-TTTCAAATCATTATAACATTTTGTTTTGTCATAAAACAATTGTTTCTA
* *
62550 TTCATGT-TAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCCAAA
127 TTCAT-TCAAGCTTATTTCAAATAAAATAATA-TAATTTATTAATATTCCAAA
* * *
62602 AATTAAAAAGTAGAGAATTAAAAAAATAAATATGTTTATCGAATAAGTTCAAATAGTTATGACTA
1 AATTAATAAGTA-AAAATTTAAAAAATAAATATGTTTATC-AA-AAGTTCAAATAGTTATGACTA
* * *
62667 TCTTAATAATTATCTATTTCAAAACATTACAACCTTTTGTTTTGTCATAAAACAATTGGTTTCTA
63 TCTTAATAATTATCTATTTCAAATCATTATAACATTTTGTTTTGTCATAAAACAATT-GTTTCTA
*
62732 TTCATTCAAGCTTATTTCAAATAAAATAATATAAATTTATTAATGTTCCAAA
127 TTCATTCAAGCTTATTTCAAATAAAATAATAT-AATTTATTAATATTCCAAA
*
62784 AATTAATAAGTAAAAATTTTAAAAATAAAT
1 AATTAATAAGTAAAAATTTAAAAAATAAAT
62814 TTATTTAAAA
Statistics
Matches: 325, Mismatches: 46, Indels: 37
0.80 0.11 0.09
Matches are distributed among these distances:
175 12 0.04
176 37 0.11
177 22 0.07
178 65 0.20
179 4 0.01
180 30 0.09
181 57 0.18
182 84 0.26
183 14 0.04
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (177 bp):
AATTAATAAGTAAAAATTTAAAAAATAAATATGTTTATCAAAAGTTCAAATAGTTATGACTATCT
TAATAATTATCTATTTCAAATCATTATAACATTTTGTTTTGTCATAAAACAATTGTTTCTATTCA
TTCAAGCTTATTTCAAATAAAATAATATAATTTATTAATATTCCAAA
Found at i:63430 original size:180 final size:179
Alignment explanation
Indices: 63122--63612 Score: 437
Period size: 181 Copynumber: 2.7 Consensus size: 179
63112 TGTTTGTTAC
* * * * * *
63122 ATCAGTTCAAAGAGA-TAAGACTATTAGAACAATGATCTATTTCAAATCGTTTTGACATTTTGTT
1 ATCAGTTCAAATA-ATTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTT-TT
* *
63186 TAGTCATAAAATAATTGCTTCAACTCATACATGCTTATTCGAAATAAAATAATACTAATTTATTA
64 TA-TCATAAAACAATTGCTTCAACTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTA
63251 ACATT-TAGAAAATT-ATTAAGTAAGA-AATTAGAAA-AAAAATCTA-TTTA-CTGA
128 ACATTATA-AAAATTGA-TAAGTAAGAGAATTA-AAACAAAAATC-AGTTTATC-GA
* * * *
63302 A-CAAGTTCAAATATTTTTTACTATTTGAACAATTATCTATTTGAAATCGTTATGACCTTATATT
1 ATC-AGTTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTT-T-TT
* ** * * *
63366 TTATCATAAAACAATTGTTTCAGTTCCTGA-AAGCTTATCTC-AAATAAAATAATATTACTTTAT
63 TTATCATAAAACAATTGCTTCAACTCAT-ACAAGCTTAT-TCGAAATAAAATAATACTAATTTAT
* * * *
63429 TAATATTATAAAAATTGATAAGTTAGAGATTTAAAACATAAATCAGTTTATCGA
126 TAACATTATAAAAATTGATAAGTAAGAGAATTAAAACAAAAATCAGTTTATCGA
* * ** *
63483 ATCAGTTCAAATAATTATGGCCATTTGAATGATTATCGATTTCAAATCGTTATGACCTTTTGTTT
1 ATCAGTTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACC-TTT-TTT
* * ** ** * * *
63548 TGTCACAAAACAATTATTTTTTA-TCGTACAAGTTTATTCGAAATAAAATAATACTGATTTATTA
64 TATCATAAAACAATT-GCTTCAACTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTA
63612 A
128 A
63613 TTCAAATATT
Statistics
Matches: 251, Mismatches: 43, Indels: 33
0.77 0.13 0.10
Matches are distributed among these distances:
179 1 0.00
180 120 0.48
181 122 0.49
182 8 0.03
ACGTcount: A:0.40, C:0.11, G:0.10, T:0.39
Consensus pattern (179 bp):
ATCAGTTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTTTTA
TCATAAAACAATTGCTTCAACTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAACA
TTATAAAAATTGATAAGTAAGAGAATTAAAACAAAAATCAGTTTATCGA
Found at i:63763 original size:26 final size:24
Alignment explanation
Indices: 63734--63801 Score: 64
Period size: 26 Copynumber: 2.7 Consensus size: 24
63724 TAATTAAACT
63734 TTAATTAAATATAAATTAAATAATAG
1 TTAATTAAATATAAATTAAAT-A-AG
* * * *
63760 TTAATTAGATATTAGTTTAATAAG
1 TTAATTAAATATAAATTAAATAAG
*
63784 TTAATTAATTATATAATT
1 TTAATTAAATATA-AATT
63802 GTTATATAAT
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
24 12 0.36
25 4 0.12
26 17 0.52
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.46
Consensus pattern (24 bp):
TTAATTAAATATAAATTAAATAAG
Found at i:64155 original size:20 final size:20
Alignment explanation
Indices: 64126--64176 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
64116 ATGTTATTAG
*
64126 TAATAA-TAATATAATAATA
1 TAATAATTAATATAATAAAA
* * *
64145 TAATTATTAATTTATTAAAA
1 TAATAATTAATATAATAAAA
64165 TAATAATTAATA
1 TAATAATTAATA
64177 AATTGATTAT
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
TAATAATTAATATAATAAAA
Found at i:64423 original size:26 final size:25
Alignment explanation
Indices: 64356--64430 Score: 73
Period size: 26 Copynumber: 3.0 Consensus size: 25
64346 ATACATTATT
* *
64356 AATAATTAATAATGATTAATTTTTTTG
1 AATAATTAATAA--AATAATTTATTTG
* *
64383 -ATTATTGATAAAATAATTCTATTTG
1 AATAATTAATAAAATAATT-TATTTG
64408 AATAATTAATAAAAT-ATTTATTT
1 AATAATTAATAAAATAATTTATTT
64431 AGTTTTATTA
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
24 11 0.28
25 8 0.20
26 21 0.52
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.49
Consensus pattern (25 bp):
AATAATTAATAAAATAATTTATTTG
Found at i:65899 original size:19 final size:22
Alignment explanation
Indices: 65850--65891 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
65840 ATATTTAACT
*
65850 AATATATATATTAATTATTAGC
1 AATATATATAATAATTATTAGC
65872 AATATATATAATAATTATTA
1 AATATATATAATAATTATTA
65892 CATAATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (22 bp):
AATATATATAATAATTATTAGC
Found at i:66196 original size:23 final size:25
Alignment explanation
Indices: 66169--66219 Score: 61
Period size: 23 Copynumber: 2.1 Consensus size: 25
66159 ATTAAAATAG
*
66169 ATTTAAATAATAATTAT-TTAT-AT
1 ATTTAAATAATAATAATGTTATAAT
* *
66192 ATTTACATATTAATAATGTTATAAT
1 ATTTAAATAATAATAATGTTATAAT
66217 ATT
1 ATT
66220 AATTTAGAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 14 0.61
24 4 0.17
25 5 0.22
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (25 bp):
ATTTAAATAATAATAATGTTATAAT
Found at i:66298 original size:15 final size:15
Alignment explanation
Indices: 66276--66308 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
66266 TTTTTTATTA
66276 ATTA-ATAAATAATT
1 ATTATATAAATAATT
66290 ATTATATAAATAATT
1 ATTATATAAATAATT
66305 -TTAT
1 ATTAT
66309 TATTATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATATAAATAATT
Found at i:66312 original size:20 final size:20
Alignment explanation
Indices: 66287--66354 Score: 57
Period size: 23 Copynumber: 3.1 Consensus size: 20
66277 TTAATAAATA
66287 ATTATTATATAAATAATTTT
1 ATTATTATATAAATAATTTT
66307 ATTATTATTATTTAAAT-ATATTT
1 ATTATTA-TA--TAAATAAT-TTT
* *
66330 ATAACTTATATAATATAATTAT
1 ATTA-TTATATAA-ATAATTTT
66352 ATT
1 ATT
66355 GTAATATTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 12
0.72 0.06 0.23
Matches are distributed among these distances:
20 7 0.18
21 5 0.13
22 8 0.21
23 15 0.39
24 3 0.08
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.54
Consensus pattern (20 bp):
ATTATTATATAAATAATTTT
Found at i:66462 original size:19 final size:18
Alignment explanation
Indices: 66429--66473 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
66419 AAGCTTGTAT
*
66429 ATATATTAAATTAAAATAA
1 ATAT-TTAAAATAAAATAA
*
66448 CATATTTAAAATAAATTAA
1 -ATATTTAAAATAAAATAA
66467 ATATTTA
1 ATATTTA
66474 TAATTATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 7 0.30
19 12 0.52
20 4 0.17
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (18 bp):
ATATTTAAAATAAAATAA
Found at i:67074 original size:14 final size:12
Alignment explanation
Indices: 67053--67123 Score: 54
Period size: 14 Copynumber: 5.5 Consensus size: 12
67043 TATTTAATTA
67053 TAAAATTAGTAAT
1 TAAAATTA-TAAT
67066 TAAATATTACTAAT
1 TAAA-ATTA-TAAT
67080 ATAAAATTATAATAT
1 -TAAAATTAT-A-AT
*
67095 TAAAAATA-AAT
1 TAAAATTATAAT
* *
67106 TAATATTAAAAT
1 TAAAATTATAAT
67118 TAAAAT
1 TAAAAT
67124 CCTTATAATA
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
11 8 0.17
12 9 0.19
13 5 0.10
14 20 0.42
15 6 0.12
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (12 bp):
TAAAATTATAAT
Found at i:67111 original size:17 final size:17
Alignment explanation
Indices: 67089--67121 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
67079 TATAAAATTA
67089 TAATATTAAAAATAAAT
1 TAATATTAAAAATAAAT
*
67106 TAATATTAAAATTAAA
1 TAATATTAAAAATAAA
67122 ATCCTTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
TAATATTAAAAATAAAT
Found at i:67407 original size:24 final size:25
Alignment explanation
Indices: 67380--67430 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 25
67370 GAATATTACT
* *
67380 ATTAGTATTATTATAAT-TTTCAAA
1 ATTAGTATTAATATAATATTTAAAA
* *
67404 ATTATTTTTAATATAATATTTAAAA
1 ATTAGTATTAATATAATATTTAAAA
67429 AT
1 AT
67431 AATTACAAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
24 14 0.64
25 8 0.36
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (25 bp):
ATTAGTATTAATATAATATTTAAAA
Found at i:67651 original size:22 final size:19
Alignment explanation
Indices: 67603--67654 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
67593 TAGTTACTAA
*
67603 TAATTATTAAATTATTTAT
1 TAATTATTAATTTATTTAT
*
67622 AAATTATTAATTTATTATATT
1 TAATTATTAATTTATT-TA-T
67643 TAATATATTAAT
1 TAAT-TATTAAT
67655 CAAATATAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 14 0.52
20 2 0.07
21 4 0.15
22 7 0.26
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
TAATTATTAATTTATTTAT
Found at i:68097 original size:13 final size:14
Alignment explanation
Indices: 68079--68107 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
68069 TTAAGATAAA
68079 TAATATAA-TATTT
1 TAATATAACTATTT
68092 TAATATAACTATTT
1 TAATATAACTATTT
68106 TA
1 TA
68108 TGTTATAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (14 bp):
TAATATAACTATTT
Found at i:68228 original size:35 final size:33
Alignment explanation
Indices: 68164--68232 Score: 86
Period size: 32 Copynumber: 2.0 Consensus size: 33
68154 AATATTATTA
* *
68164 ATTTATTATTACTATTAAATAAGTTAATTAATT
1 ATTTATTATTAATATTAAACAAGTTAATTAATT
68197 ATTT-TTATTAATATTAATACAAGTTCAAATTAATT
1 ATTTATTATTAATATTAA-ACAAGTT--AATTAATT
68232 A
1 A
68233 AATACAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
32 12 0.39
33 10 0.32
35 9 0.29
ACGTcount: A:0.43, C:0.04, G:0.03, T:0.49
Consensus pattern (33 bp):
ATTTATTATTAATATTAAACAAGTTAATTAATT
Found at i:69280 original size:22 final size:22
Alignment explanation
Indices: 69249--69527 Score: 336
Period size: 22 Copynumber: 12.8 Consensus size: 22
69239 GTTTCACATT
*
69249 TCAAAAATTCTCATTTGAAGAC
1 TCAAAGATTCTCATTTGAAGAC
69271 TCAAAGATTCTCATTTGAAGAC
1 TCAAAGATTCTCATTTGAAGAC
69293 TCAAAGATTCTCATTTGAAGAC
1 TCAAAGATTCTCATTTGAAGAC
* *
69315 TCAAAGATTCTCATTTGAAAAT
1 TCAAAGATTCTCATTTGAAGAC
* * *
69337 TCAAAGATTTTCATTTGAAAAT
1 TCAAAGATTCTCATTTGAAGAC
*
69359 TCAAAGATTCTCATTTGAAAAC
1 TCAAAGATTCTCATTTGAAGAC
69381 TCAAAGATTCTCATTT-AAGAC
1 TCAAAGATTCTCATTTGAAGAC
* *
69402 TCAGA-ATTCTCATTT-AAAAC
1 TCAAAGATTCTCATTTGAAGAC
* **
69422 TCAAAGATTCTTATTTGTGGATTTC
1 TCAAAGATTCTCATTTGAAGA---C
* * *
69447 TTAAAAATTCTCATTT-AATAC
1 TCAAAGATTCTCATTTGAAGAC
69468 TCAAAGATTCTCATTT-AAGAC
1 TCAAAGATTCTCATTTGAAGAC
*
69489 TCAAAGATTCTCA-TTCAAGAC
1 TCAAAGATTCTCATTTGAAGAC
*
69510 TTAAAGATTCTCATTTGA
1 TCAAAGATTCTCATTTGA
69528 GGGTTCACAA
Statistics
Matches: 225, Mismatches: 25, Indels: 14
0.85 0.09 0.05
Matches are distributed among these distances:
20 20 0.09
21 66 0.29
22 124 0.55
24 1 0.00
25 14 0.06
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.36
Consensus pattern (22 bp):
TCAAAGATTCTCATTTGAAGAC
Found at i:69657 original size:20 final size:20
Alignment explanation
Indices: 69629--69682 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
69619 TGTCATGACC
*
69629 AATGATGCGAATGCTTTCTT
1 AATGGTGCGAATGCTTTCTT
69649 AATGGTGCGAATGCTTTCTT
1 AATGGTGCGAATGCTTTCTT
69669 AATGGTGCGAATGC
1 AATGGTGCGAATGC
69683 AACAATCTAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (20 bp):
AATGGTGCGAATGCTTTCTT
Found at i:70026 original size:63 final size:64
Alignment explanation
Indices: 69949--70380 Score: 390
Period size: 63 Copynumber: 6.9 Consensus size: 64
69939 TTTGTCCTTC
* *
69949 ATCATTTGGTCACCACTCACAAGCTTTTTAGCACTAGCCATTTTAGAACAAATTTCATCTTTCCT
1 ATCATTTGGTCACCACTCACAGGCTTTTTAGCACTAGCCATTTCAGAACAAATTTCATCTTT-CT
* * * * *
70014 -T-ATTTGGTCACCACTCACAGGCTTCTTAGCACTAGTCGTTTCAAAACAAA-TTC-TGTCTTCT
1 ATCATTTGGTCACCACTCACAGGCTTTTTAGCACTAGCCATTTCAGAACAAATTTCATCT-TTCT
* * * ** *
70075 ATCACTTGGTCACCACTCATAAGCTTTTTAGCACTAGCTGTTCCAGAACAAA-TTCTAT-TTTCT
1 ATCATTTGGTCACCACTCACAGGCTTTTTAGCACTAGCCATTTCAGAACAAATTTC-ATCTTTCT
* * * *
70138 ATCACTTGATCACCACTCATAGGCTTTTTAGCACTAGTCA-TTCTAGAACAAATTTCAT-TCTT-
1 ATCATTTGGTCACCACTCACAGGCTTTTTAGCACTAGCCATTTC-AGAACAAATTTCATCT-TTC
70200 T
64 T
* * *
70201 ATCATTTGGTCACCACTCACAGGCTTTTTGGCATTAGCAATTTCA-AACAAA-TTCTATC-TTCT
1 ATCATTTGGTCACCACTCACAGGCTTTTTAGCACTAGCCATTTCAGAACAAATTTC-ATCTTTCT
* * * * * * * *
70263 ATCACTTT-GTCACCACCCATAGGCTTCTCAACACTATCCATTCCAAAACAAA-TTCTATCTTT-
1 ATCA-TTTGGTCACCACTCACAGGCTTTTTAGCACTAGCCATTTCAGAACAAATTTC-ATCTTTC
70325 T
64 T
* * * * *
70326 ATCACTTGGTCACCACTCATAGGCTTCTCAGCACTAGCCATTCCAGAACAAATTT
1 ATCATTTGGTCACCACTCACAGGCTTTTTAGCACTAGCCATTTCAGAACAAATTT
70381 TGTCCATTAC
Statistics
Matches: 307, Mismatches: 43, Indels: 35
0.80 0.11 0.09
Matches are distributed among these distances:
61 9 0.03
62 50 0.16
63 233 0.76
64 14 0.05
65 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.10, T:0.35
Consensus pattern (64 bp):
ATCATTTGGTCACCACTCACAGGCTTTTTAGCACTAGCCATTTCAGAACAAATTTCATCTTTCT
Found at i:70151 original size:126 final size:126
Alignment explanation
Indices: 69880--70379 Score: 468
Period size: 126 Copynumber: 4.0 Consensus size: 126
69870 GATCCTCATC
* * * * * *
69880 ATTTTC-ATCACTTGATCATCATTCATAGGCTTCTCAACATTAG-CATGTTT-AGAACAAGTTTT
1 ATTTTCTATCACTTGATCACCACTCATAGGCTTCTCAACACTAGTC--GTTTCAAAACAAATTCT
* **
69942 GTCCTTC-ATCATTTGGTCACCACTCACAAGCTTTTTAGCACTAGCCATTTTAGAACAAATT-T
64 GT-CTTCTATCACTTGGTCACCACTCACAAGCTTTTTAGCACTAGCCATTCCAGAACAAATTCT
* * * * *
70004 CATCTTTCCT-T-ATTTGGTCACCACTCACAGGCTTCTTAGCACTAGTCGTTTCAAAACAAATTC
1 -AT-TTT-CTATCACTTGATCACCACTCATAGGCTTCTCAACACTAGTCGTTTCAAAACAAATTC
* **
70067 TGTCTTCTATCACTTGGTCACCACTCATAAGCTTTTTAGCACTAGCTGTTCCAGAACAAATTCT
63 TGTCTTCTATCACTTGGTCACCACTCACAAGCTTTTTAGCACTAGCCATTCCAGAACAAATTCT
* * * * *
70131 ATTTTCTATCACTTGATCACCACTCATAGGCTTTTTAGCACTAGTC-ATTCTAGAACAAATTTCA
1 ATTTTCTATCACTTGATCACCACTCATAGGCTTCTCAACACTAGTCGTTTC-AAAACAAA-TTC-
* * * * * *
70195 T-TCTT-TATCATTTGGTCACCACTCACAGGCTTTTTGGCATTAGCAATTTCA-AACAAATTCT
63 TGTCTTCTATCACTTGGTCACCACTCACAAGCTTTTTAGCACTAGCCATTCCAGAACAAATTCT
* * * *
70256 ATCTTCTATCACTTTG-TCACCACCCATAGGCTTCTCAACACTA-TCCATTCCAAAACAAATTCT
1 ATTTTCTATCAC-TTGATCACCACTCATAGGCTTCTCAACACTAGT-CGTTTCAAAACAAATTCT
* * * * * *
70319 ATCTTTTATCACTTGGTCACCACTCATAGGCTTCTCAGCACTAGCCATTCCAGAACAAATT
64 GTCTTCTATCACTTGGTCACCACTCACAAGCTTTTTAGCACTAGCCATTCCAGAACAAATT
70380 TTGTCCATTA
Statistics
Matches: 310, Mismatches: 47, Indels: 35
0.79 0.12 0.09
Matches are distributed among these distances:
123 1 0.00
124 10 0.03
125 107 0.35
126 180 0.58
127 11 0.04
128 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.10, T:0.36
Consensus pattern (126 bp):
ATTTTCTATCACTTGATCACCACTCATAGGCTTCTCAACACTAGTCGTTTCAAAACAAATTCTGT
CTTCTATCACTTGGTCACCACTCACAAGCTTTTTAGCACTAGCCATTCCAGAACAAATTCT
Found at i:70345 original size:188 final size:189
Alignment explanation
Indices: 69949--70380 Score: 575
Period size: 188 Copynumber: 2.3 Consensus size: 189
69939 TTTGTCCTTC
* * * * *
69949 ATCATTTGGTCACCACTCACAAGCTTTTTAGCACTAGCCATTTTAGAACAAATTTCATCTTTCCT
1 ATCACTTGGTCACCACTCATAGGCTTTTTAGCACTAGCCATTCTAGAACAAATTTCATCTTTCAT
* * *
70014 TATTTGGTCACCACTCACAGGCTTCTTAGCACTAGTCGTTTCAAAACAAATTCTGTCTTCTATCA
66 CATTTGGTCACCACTCACAGGCTTCTTAGCACTAGTCATTTCAAAACAAATTCTATCTTCTATCA
* * * * ** *
70079 CTTGGTCACCACTCATAAGCTTTTTAGCACTAGCTGTTCCAGAACAAATTCTATTTTCT
131 CTTGGTCACCACCCATAAGCTTCTCAACACTAGCCATTCCAAAACAAATTCTATTTTCT
* *
70138 ATCACTTGATCACCACTCATAGGCTTTTTAGCACTAGTCATTCTAGAACAAATTTCATTCTTT-A
1 ATCACTTGGTCACCACTCATAGGCTTTTTAGCACTAGCCATTCTAGAACAAATTTCA-TCTTTCA
* * *
70202 TCATTTGGTCACCACTCACAGGCTTTTTGGCATTAG-CAATTTC-AAACAAATTCTATCTTCTAT
65 TCATTTGGTCACCACTCACAGGCTTCTTAGCACTAGTC-ATTTCAAAACAAATTCTATCTTCTAT
* * *
70265 CACTTTGTCACCACCCATAGGCTTCTCAACACTATCCATTCCAAAACAAATTCTATCTTT-T
129 CACTTGGTCACCACCCATAAGCTTCTCAACACTAGCCATTCCAAAACAAATTCTAT-TTTCT
* * *
70326 ATCACTTGGTCACCACTCATAGGCTTCTCAGCACTAGCCATTCCAGAACAAATTT
1 ATCACTTGGTCACCACTCATAGGCTTTTTAGCACTAGCCATTCTAGAACAAATTT
70381 TGTCCATTAC
Statistics
Matches: 212, Mismatches: 28, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
188 117 0.55
189 90 0.42
190 5 0.02
ACGTcount: A:0.28, C:0.27, G:0.10, T:0.35
Consensus pattern (189 bp):
ATCACTTGGTCACCACTCATAGGCTTTTTAGCACTAGCCATTCTAGAACAAATTTCATCTTTCAT
CATTTGGTCACCACTCACAGGCTTCTTAGCACTAGTCATTTCAAAACAAATTCTATCTTCTATCA
CTTGGTCACCACCCATAAGCTTCTCAACACTAGCCATTCCAAAACAAATTCTATTTTCT
Found at i:71508 original size:24 final size:23
Alignment explanation
Indices: 71470--71521 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
71460 CTCTTTCCTC
** *
71470 TCTTTCTTTTGTTTTACTTTTCTT
1 TCTTTCTTTCCTTTTAC-TTTCTA
*
71494 TCTTTCTTTCCTTTTGCTTTCTA
1 TCTTTCTTTCCTTTTACTTTCTA
71517 TCTTT
1 TCTTT
71522 GAGATTTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 10 0.42
24 14 0.58
ACGTcount: A:0.04, C:0.21, G:0.04, T:0.71
Consensus pattern (23 bp):
TCTTTCTTTCCTTTTACTTTCTA
Found at i:71515 original size:19 final size:18
Alignment explanation
Indices: 71486--71521 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
71476 TTTTGTTTTA
*
71486 CTTTTCTTTCTTTCTTTC
1 CTTTTCTTTCTATCTTTC
71504 CTTTTGCTTTCTATCTTT
1 CTTTT-CTTTCTATCTTT
71522 GAGATTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.03, C:0.25, G:0.03, T:0.69
Consensus pattern (18 bp):
CTTTTCTTTCTATCTTTC
Found at i:72031 original size:19 final size:21
Alignment explanation
Indices: 72007--72054 Score: 64
Period size: 23 Copynumber: 2.3 Consensus size: 21
71997 GATAACAAAT
72007 GAAATCCT-ATTAC-ATAAAA
1 GAAATCCTAATTACTATAAAA
72026 GAAATCCTAACATTACTATAAAA
1 GAAATCCT-A-ATTACTATAAAA
72049 GAAATC
1 GAAATC
72055 TAGAATGACA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.32
22 5 0.20
23 12 0.48
ACGTcount: A:0.52, C:0.17, G:0.06, T:0.25
Consensus pattern (21 bp):
GAAATCCTAATTACTATAAAA
Found at i:72641 original size:33 final size:33
Alignment explanation
Indices: 72595--72705 Score: 106
Period size: 33 Copynumber: 3.4 Consensus size: 33
72585 TTAGTTTTAC
* *
72595 AATAAAT-TAAATAATTATTAATATTGATAGATA-
1 AATAAATAT-AATAATTATT-ATATTAATAAATAG
72628 AATAAATATAATAATTATTATA-TAATAAATAG
1 AATAAATATAATAATTATTATATTAATAAATAG
* *
72660 ATTAATATATAATAATTATTTATATTATTAAATA-
1 AATAA-ATATAATAATTA-TTATATTAATAAATAG
72694 ATATAAAT-TAAT
1 A-ATAAATATAAT
72706 TTATCTTTAA
Statistics
Matches: 67, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
31 7 0.10
32 7 0.10
33 33 0.49
34 9 0.13
35 11 0.16
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (33 bp):
AATAAATATAATAATTATTATATTAATAAATAG
Found at i:72663 original size:19 final size:18
Alignment explanation
Indices: 72632--72769 Score: 63
Period size: 17 Copynumber: 7.4 Consensus size: 18
72622 TAGATAAATA
*
72632 AATATAATAATTATTATAT
1 AATA-AATAATTAATATAT
72651 AATAAATAGATTAATATAT
1 AATAAATA-ATTAATATAT
* *
72670 AAT-AATTATTTATAT-T
1 AATAAATAATTAATATAT
*
72686 ATTAAATAATATAA-AT-T
1 AATAAATAAT-TAATATAT
** ** *
72703 AATTTATCTTTAATATTAAA
1 AATAAATAATTAATA-T-AT
72723 AATAAAT-ATTAATA-AT
1 AATAAATAATTAATATAT
72739 AATTAAGATAATTATAATATTAT
1 AA-TAA-ATAA-T-TAATA-TAT
72762 AATAAATA
1 AATAAATA
72770 CTTATTTTAT
Statistics
Matches: 89, Mismatches: 16, Indels: 26
0.68 0.12 0.20
Matches are distributed among these distances:
16 9 0.10
17 24 0.27
18 12 0.13
19 23 0.26
20 6 0.07
21 8 0.09
22 3 0.03
23 4 0.04
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (18 bp):
AATAAATAATTAATATAT
Found at i:72936 original size:17 final size:17
Alignment explanation
Indices: 72914--72949 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
72904 AATAGTAATT
*
72914 ATTAAAATTTATGATAA
1 ATTAAAATTTATAATAA
72931 ATTAAAATTTATAATAA
1 ATTAAAATTTATAATAA
72948 AT
1 AT
72950 AATTAATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (17 bp):
ATTAAAATTTATAATAA
Found at i:73189 original size:17 final size:18
Alignment explanation
Indices: 73148--73192 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 18
73138 AAATTACAAG
73148 TACTTAAT-TT-ATAATT
1 TACTTAATATTAATAATT
*
73164 TAATTAATATTAATAA-T
1 TACTTAATATTAATAATT
73181 TACTTAATATTA
1 TACTTAATATTA
73193 TTAACATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 7 0.28
17 14 0.56
18 4 0.16
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.51
Consensus pattern (18 bp):
TACTTAATATTAATAATT
Found at i:73279 original size:17 final size:16
Alignment explanation
Indices: 73263--73333 Score: 58
Period size: 17 Copynumber: 4.4 Consensus size: 16
73253 AAATTAAATA
73263 TATATTATAATATAAT
1 TATATTATAATATAAT
*
73279 AAATATTAT-A-A-AAT
1 -TATATTATAATATAAT
*
73293 TATATTATTAATTTAAT
1 TATATTA-TAATATAAT
*
73310 TATATAATAATATTAAT
1 TATATTATAATA-TAAT
*
73327 TTTATTA
1 TATATTA
73334 AACAATTGAA
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
13 6 0.14
14 4 0.10
15 2 0.05
16 5 0.12
17 25 0.60
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
TATATTATAATATAAT
Found at i:73892 original size:19 final size:20
Alignment explanation
Indices: 73863--73906 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
73853 TAATTTATAT
*
73863 TAATTATAATAGATA-ATACA
1 TAATTATAATAAATAGATA-A
73883 TAATTA-AATAAATAGATAA
1 TAATTATAATAAATAGATAA
73902 TAATT
1 TAATT
73907 TATCATTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (20 bp):
TAATTATAATAAATAGATAA
Found at i:73914 original size:26 final size:26
Alignment explanation
Indices: 73850--73963 Score: 77
Period size: 23 Copynumber: 4.6 Consensus size: 26
73840 ATCAAATTAT
*
73850 TAATAATTTATATTAATTATAATAGA
1 TAATAATTTATATTAAATATAATAGA
73876 TAATACA--TA-ATTAAATA-AATAGA
1 TAATA-ATTTATATTAAATATAATAGA
**
73899 TAATAATTTATCATTATTTTATAATA-A
1 TAATAATTTAT-ATTA-AATATAATAGA
* *
73926 TATTAA-TTA-A-TAAATATTATA-A
1 TAATAATTTATATTAAATATAATAGA
73948 TAAT-ATTTGATATTAA
1 TAATAATTT-ATATTAA
73964 TATTTAAAAT
Statistics
Matches: 69, Mismatches: 8, Indels: 23
0.69 0.08 0.23
Matches are distributed among these distances:
21 1 0.01
22 13 0.19
23 14 0.20
24 11 0.16
25 5 0.07
26 12 0.17
27 9 0.13
28 4 0.06
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.45
Consensus pattern (26 bp):
TAATAATTTATATTAAATATAATAGA
Found at i:73952 original size:49 final size:49
Alignment explanation
Indices: 73850--73951 Score: 124
Period size: 49 Copynumber: 2.1 Consensus size: 49
73840 ATCAAATTAT
73850 TAATAATTTATATTAATTATAATAGATAATACATAATTAAATAAATAGA
1 TAATAATTTATATTAATTATAATAGATAATACATAATTAAATAAATAGA
* * *
73899 TAATAATTTATCATT-ATT-TTATA-ATAATA-TTAATT-AATAAATATTA
1 TAATAATTTAT-ATTAATTATAATAGATAATACATAATTAAATAAATA-GA
73945 TAATAAT
1 TAATAAT
73952 ATTTGATATT
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
45 8 0.17
46 13 0.27
47 6 0.12
48 4 0.08
49 14 0.29
50 3 0.06
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (49 bp):
TAATAATTTATATTAATTATAATAGATAATACATAATTAAATAAATAGA
Found at i:73982 original size:12 final size:13
Alignment explanation
Indices: 73948--73985 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
73938 AATATTATAA
* *
73948 TAATATTTGATAT
1 TAATATTTAAAAT
73961 TAATATTTAAAAT
1 TAATATTTAAAAT
73974 TAA-ATTTAAAAT
1 TAATATTTAAAAT
73986 AATTGTAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 9 0.39
13 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (13 bp):
TAATATTTAAAAT
Found at i:74490 original size:16 final size:17
Alignment explanation
Indices: 74458--74490 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
74448 GACCAGTGCA
74458 AACAATTATGACTATTTG
1 AACAATTAT-ACTATTTG
74476 AACAATTAT-CTATTT
1 AACAATTATACTATTT
74491 CAAATTGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.42
Consensus pattern (17 bp):
AACAATTATACTATTTG
Found at i:74526 original size:181 final size:181
Alignment explanation
Indices: 74282--74688 Score: 457
Period size: 181 Copynumber: 2.2 Consensus size: 181
74272 AGTTCATTAG
* * * * * * *
74282 TTATAACTATTTGACCAAATATTTATTTCAAATTGTTATGATCATTTGTTTTATCATAAAACAAT
1 TTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTATCACAAAACAAT
* * ***
74347 TATTGTTGTTCATATAATCTTATTC-GAAATAA-AGTAA-TGCTAATTAATTAATATTTTGAAAA
66 TATTGTTGTTCATACAAACTTATTCAG-AATAACA-TAATTG-TAATTAATTAATATTCCAAAAA
* * *
74409 TTAATAAGTAATG-GA-TTTAGAAAATGTATCTGTTGGCTTG-ACCAGTGCAAACAA
128 TTAATAAGTAA-GAGATTTTA-AAAATGAATCTGTTGAC-TGAACAAGTGCAAACAA
*
74463 TTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTCTCACAAAACAAT
1 TTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTATCACAAAACAAT
* * *
74528 TGTTTTTGTTCATACAAACTTATTCAGAATAACATAATTGTAATTTATTAATATTCCAAAAATTA
66 TATTGTTGTTCATACAAACTTATTCAGAATAACATAATTGTAATTAATTAATATTCCAAAAATTA
* * * * * *
74593 CTAAGTGAGAGATTTTAAAAATGAATTTGTTTACTGAACAAGTTCAAATAA
131 ATAAGTAAGAGATTTTAAAAATGAATCTGTTGACTGAACAAGTGCAAACAA
* * * *
74644 TTATGGCTATTTGAACAATTATCTACTTCAAATTGCTATAACCTT
1 TTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTT
74689 ATGTATTGTC
Statistics
Matches: 191, Mismatches: 29, Indels: 12
0.82 0.12 0.05
Matches are distributed among these distances:
180 3 0.02
181 180 0.94
182 8 0.04
ACGTcount: A:0.37, C:0.11, G:0.10, T:0.41
Consensus pattern (181 bp):
TTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTATCACAAAACAAT
TATTGTTGTTCATACAAACTTATTCAGAATAACATAATTGTAATTAATTAATATTCCAAAAATTA
ATAAGTAAGAGATTTTAAAAATGAATCTGTTGACTGAACAAGTGCAAACAA
Found at i:75009 original size:181 final size:179
Alignment explanation
Indices: 74735--75134 Score: 498
Period size: 181 Copynumber: 2.2 Consensus size: 179
74725 AGCTTGTTGC
* * * *
74735 AAATCTGTTTACCAAATAATTTTAAATAGTTATAACTATTAACAATTATTTATTTCAAATAGTTA
1 AAATCTGTTTACCAAACAAGTTCAAATAGTTATAACTATTAACAATTATCTATTTCAAATAGTTA
* * * * *** *
74800 TGACCTTTTGTTTTGTCATAAAACAATTATTTTTGTTCATATTA-GCTTATTC-AAATTAAAATA
66 TAACCTTTTGTTTCGCCATAAAACAATTATATCAATTCACA-TAGGCTTATTCGAAA-TAAAATA
* * * * * *
74863 ATATTAATTTATTAATATTTCAACAATTAATAAGTAAAAGATTTAAACAAT
129 ACACTAACTTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAAT
* * * *
74914 AAATATGTTTACCAAACAAGTTCAAATAGTAATAACTATCTGAATAATTATCTATTTCAAATCGT
1 AAATCTGTTTACCAAACAAGTTCAAATAGTTATAACTAT-T-AACAATTATCTATTTCAAATAGT
74979 TATAACCTTTTGTTTCGCCATAAAACAATTATATCAATTCACATAGGCTTATTCGAAATAAAATA
64 TATAACCTTTTGTTTCGCCATAAAACAATTATATCAATTCACATAGGCTTATTCGAAATAAAATA
* * *
75044 ACACTAACTTATTACTATTCCAAAAATTAATGAGTAAGAGATTTAAAAAAT
129 ACACTAACTTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAAT
* * *
75095 GAATCTATTTACCAAACAAGTTCAAATAGTTATGACTATT
1 AAATCTGTTTACCAAACAAGTTCAAATAGTTATAACTATT
75135 TATATTATAA
Statistics
Matches: 187, Mismatches: 30, Indels: 7
0.83 0.13 0.03
Matches are distributed among these distances:
179 34 0.18
180 4 0.02
181 146 0.78
182 3 0.02
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.39
Consensus pattern (179 bp):
AAATCTGTTTACCAAACAAGTTCAAATAGTTATAACTATTAACAATTATCTATTTCAAATAGTTA
TAACCTTTTGTTTCGCCATAAAACAATTATATCAATTCACATAGGCTTATTCGAAATAAAATAAC
ACTAACTTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAAT
Found at i:75628 original size:180 final size:181
Alignment explanation
Indices: 75383--75711 Score: 408
Period size: 181 Copynumber: 1.8 Consensus size: 181
75373 AATCACTTAC
* * * ** * **
75383 TTATTAATTTTTAAAATATTATTAAATTAGTATTATTTTAATCCAAATAAGCTTGTATGAACAAA
1 TTATTAAGTTTCAAAATATTATTAAATTAATATTATTTTAATCCAAATAAAATAGTACAAACAAA
* * * ** * * * *
75448 A-CAATTGTTTTACGTTAAAAGAAAAGGTCATAACGATTTGAAATAGATAATCATTTATAGAGTC
66 ACCAATTATTTGACGATAAAAGAAAACATCATAACGATTTCAAATAAATAATCATTGAAAGAGTC
** *
75512 TTAACTATTTGAATTGGTTCAACAATTAGATTTATTTTTTAATTTTCTTGG
131 AAAACTATTTGAAATGGTTCAACAATTAGATTTATTTTTTAATTTTCTTGG
* *
75563 TTATTAAGTTTCAAAATATTATTAAATTAATATTATTTTATTCTAAATAAAATAGTACAAACAAA
1 TTATTAAGTTTCAAAATATTATTAAATTAATATTATTTTAATCCAAATAAAATAGTACAAACAAA
* * * * *
75628 ACCAATTATTTGATGATAAAATAAAACATTATAACGATTTCAAATAAATAATTATTGAAATAGTC
66 ACCAATTATTTGACGATAAAAGAAAACATCATAACGATTTCAAATAAATAATCATTGAAAGAGTC
75693 AAAACTATTTGAAATGGTT
131 AAAACTATTTGAAATGGTT
75712 TGGTAAACAG
Statistics
Matches: 121, Mismatches: 27, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
180 56 0.46
181 65 0.54
ACGTcount: A:0.43, C:0.08, G:0.09, T:0.40
Consensus pattern (181 bp):
TTATTAAGTTTCAAAATATTATTAAATTAATATTATTTTAATCCAAATAAAATAGTACAAACAAA
ACCAATTATTTGACGATAAAAGAAAACATCATAACGATTTCAAATAAATAATCATTGAAAGAGTC
AAAACTATTTGAAATGGTTCAACAATTAGATTTATTTTTTAATTTTCTTGG
Found at i:76440 original size:21 final size:21
Alignment explanation
Indices: 76411--76467 Score: 53
Period size: 22 Copynumber: 2.6 Consensus size: 21
76401 GAATTGATAT
*
76411 TAATCATTAATT-TATTTACTA
1 TAATTATTAATTCTA-TTACTA
*
76432 TAATTATTAAATTCTATTATTA
1 TAATTATT-AATTCTATTACTA
76454 TAACATTATTAATT
1 T-A-ATTATTAATT
76468 AAGTAAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
21 7 0.23
22 10 0.33
23 7 0.23
24 6 0.20
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (21 bp):
TAATTATTAATTCTATTACTA
Found at i:77332 original size:16 final size:16
Alignment explanation
Indices: 77295--77342 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
77285 TATTAATATT
77295 TATAATATTACTAATAA
1 TATAATATTA-TAATAA
**
77312 T-TAATATTATTGTAA
1 TATAATATTATAATAA
77327 TATAATAATTATAATA
1 TATAAT-ATTATAATA
77343 TTTTTATAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 5 0.20
16 12 0.48
17 8 0.32
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (16 bp):
TATAATATTATAATAA
Found at i:77657 original size:19 final size:18
Alignment explanation
Indices: 77633--77671 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
77623 TGTTTGAAAT
*
77633 ATTAATACTTAATATTTTA
1 ATTAATAATTAAT-TTTTA
*
77652 ATTAATAATTTATTTTTA
1 ATTAATAATTAATTTTTA
77670 AT
1 AT
77672 AAAATAACGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTAATAATTAATTTTTA
Found at i:78272 original size:9 final size:9
Alignment explanation
Indices: 78258--78284 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
78248 TATTTTTAGT
78258 AATGAAAAA
1 AATGAAAAA
78267 AATGAAAAA
1 AATGAAAAA
78276 AATGAAAAA
1 AATGAAAAA
78285 TTAGGCAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (9 bp):
AATGAAAAA
Found at i:79307 original size:54 final size:52
Alignment explanation
Indices: 79233--79346 Score: 156
Period size: 54 Copynumber: 2.2 Consensus size: 52
79223 AAAAAAAAGA
* *
79233 ATTTCTAAATAGGCCCAAATGGTGAAAAATTTAGAAATTTCAAAAAGGGAAAAT
1 ATTTCTAAATAGACCCAAATGGTGAAAAATTTAGAAA-TTC-AAAAGAGAAAAT
* * * *
79287 ATTTCTAAATTGACCTAAATGGTGGAAAATTTATAAATTCAAAAGAGAAAAT
1 ATTTCTAAATAGACCCAAATGGTGAAAAATTTAGAAATTCAAAAGAGAAAAT
79339 ATTTCTAA
1 ATTTCTAA
79347 TTTGGCCCAA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
52 19 0.35
53 3 0.06
54 32 0.59
ACGTcount: A:0.47, C:0.09, G:0.14, T:0.30
Consensus pattern (52 bp):
ATTTCTAAATAGACCCAAATGGTGAAAAATTTAGAAATTCAAAAGAGAAAAT
Found at i:79364 original size:52 final size:54
Alignment explanation
Indices: 79233--79370 Score: 181
Period size: 52 Copynumber: 2.6 Consensus size: 54
79223 AAAAAAAAGA
* * *
79233 ATTTCTAAATAGGCCCAAATGGTGAAAAATTTAGAAATTTCAAAAAGGGAAAAT
1 ATTTCTAAATTGGCCCAAATGGTGGAAAATTTAGAAATTTCAAAAAGAGAAAAT
* * *
79287 ATTTCTAAATTGACCTAAATGGTGGAAAATTTATAAA-TTC-AAAAGAGAAAAT
1 ATTTCTAAATTGGCCCAAATGGTGGAAAATTTAGAAATTTCAAAAAGAGAAAAT
* *
79339 ATTTCTAATTTGGCCCAAATAGTGGAATAATT
1 ATTTCTAAATTGGCCCAAATGGTGGAA-AATT
79371 AGATATATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
52 34 0.47
53 7 0.10
54 32 0.44
ACGTcount: A:0.45, C:0.09, G:0.15, T:0.30
Consensus pattern (54 bp):
ATTTCTAAATTGGCCCAAATGGTGGAAAATTTAGAAATTTCAAAAAGAGAAAAT
Found at i:79682 original size:9 final size:9
Alignment explanation
Indices: 79668--79692 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
79658 TTTTAGTTTG
79668 TATAATTAC
1 TATAATTAC
79677 TATAATTAC
1 TATAATTAC
79686 TATAATT
1 TATAATT
79693 TTATTATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (9 bp):
TATAATTAC
Found at i:79768 original size:19 final size:18
Alignment explanation
Indices: 79743--79787 Score: 54
Period size: 20 Copynumber: 2.4 Consensus size: 18
79733 TATATTTATA
*
79743 TTATAATATATATTTAAT
1 TTATAATATATATTAAAT
*
79761 TGTATAATTATTTATTAAAT
1 T-TATAA-TATATATTAAAT
79781 TTATAAT
1 TTATAAT
79788 TTTGGGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 2 0.09
19 10 0.43
20 11 0.48
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (18 bp):
TTATAATATATATTAAAT
Found at i:79788 original size:19 final size:19
Alignment explanation
Indices: 79743--79788 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
79733 TATATTTATA
*
79743 TTATAA-TATATATTTAAT
1 TTATAATTATATATTAAAT
*
79761 TGTATAATTATTTATTAAAT
1 T-TATAATTATATATTAAAT
79781 TTATAATT
1 TTATAATT
79789 TTGGGAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 1 0.04
19 12 0.50
20 11 0.46
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (19 bp):
TTATAATTATATATTAAAT
Found at i:80088 original size:18 final size:17
Alignment explanation
Indices: 80044--80098 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 17
80034 TTTTTAAACA
*
80044 ATTAATAATTAAAA-AT
1 ATTATTAATTAAAATAT
*
80060 ATTTTTTAATTAAAATAGT
1 A-TTATTAATTAAAATA-T
*
80079 ATTATTAATTATAATA-
1 ATTATTAATTAAAATAT
80095 ATTA
1 ATTA
80099 AATATTATTA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
16 5 0.16
17 11 0.34
18 14 0.44
19 2 0.06
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (17 bp):
ATTATTAATTAAAATAT
Found at i:80470 original size:66 final size:71
Alignment explanation
Indices: 80390--80524 Score: 158
Period size: 66 Copynumber: 2.0 Consensus size: 71
80380 TTATATACTA
* *
80390 AATATATACTATTTATTA-ATAATTAGTATTTAATAAA-A-A-TTAA-TAATAT-AAATATATTA
1 AATATATAC-ATTTAATATATAATAAG-ATTTAATAAATATAGTTAATTAATATAAAATATATTA
80449 TAATTAATG
64 -AATTAATG
* *
80458 AATATATA-ATTTAATATATTATAAGATTTAATAAATATAGTTAATTATTATAAAATATATTAAA
1 AATATATACATTTAATATATAATAAGATTTAATAAATATAGTTAATTAATATAAAATATATTAAA
80522 TTA
66 TTA
80525 TAATAATATT
Statistics
Matches: 57, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
66 17 0.30
67 7 0.12
68 9 0.16
69 4 0.07
70 10 0.18
71 10 0.18
ACGTcount: A:0.52, C:0.01, G:0.03, T:0.44
Consensus pattern (71 bp):
AATATATACATTTAATATATAATAAGATTTAATAAATATAGTTAATTAATATAAAATATATTAAA
TTAATG
Found at i:80495 original size:33 final size:32
Alignment explanation
Indices: 80417--80496 Score: 83
Period size: 33 Copynumber: 2.4 Consensus size: 32
80407 AATAATTAGT
*
80417 ATTTAATAAAAATTAATAATATAAATATATTATA
1 ATTTAATAAATA-T-ATAATATAAATATATTATA
* *
80451 A-TTAATGAATATATAAT-TTAATATATTATAA
1 ATTTAATAAATATATAATATAAATATATTAT-A
80482 GATTTAATAAATATA
1 -ATTTAATAAATATA
80497 GTTAATTATT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
30 11 0.28
31 6 0.15
32 2 0.05
33 19 0.49
34 1 0.03
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (32 bp):
ATTTAATAAATATATAATATAAATATATTATA
Found at i:80510 original size:19 final size:19
Alignment explanation
Indices: 80437--80530 Score: 62
Period size: 20 Copynumber: 5.2 Consensus size: 19
80427 AATTAATAAT
80437 ATAAATATATTATAA-T-TA
1 ATAAATATATTA-AATTATA
*
80455 ATGAATATA-T-AATT-TA
1 ATAAATATATTAAATTATA
*
80471 ATATAT-TA-TAAGATT-TA
1 ATAAATATATTAA-ATTATA
*
80488 ATAAATATAGTT-AATTATT
1 ATAAATATA-TTAAATTATA
80507 ATAAAATATATTAAATTATA
1 AT-AAATATATTAAATTATA
80527 ATAA
1 ATAA
80531 TATTAACATG
Statistics
Matches: 61, Mismatches: 6, Indels: 17
0.73 0.07 0.20
Matches are distributed among these distances:
15 5 0.08
16 8 0.13
17 11 0.18
18 13 0.21
19 8 0.13
20 16 0.26
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (19 bp):
ATAAATATATTAAATTATA
Found at i:80536 original size:16 final size:17
Alignment explanation
Indices: 80490--80533 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 17
80480 AAGATTTAAT
80490 AAATATAGTTAATTATTATA
1 AAATATA-TTAA--ATTATA
80510 AAATATATTAAATTATA
1 AAATATATTAAATTATA
80527 ATAATAT
1 A-AATAT
80534 TAACATGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 7 0.30
18 5 0.22
19 4 0.17
20 7 0.30
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (17 bp):
AAATATATTAAATTATA
Found at i:80589 original size:15 final size:16
Alignment explanation
Indices: 80571--80604 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
80561 ATTATAATAC
80571 AATTAAATTAA-TATT
1 AATTAAATTAATTATT
*
80586 AATTATATTAATTATT
1 AATTAAATTAATTATT
80602 AAT
1 AAT
80605 ATTTAGTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
AATTAAATTAATTATT
Found at i:80642 original size:15 final size:15
Alignment explanation
Indices: 80622--80693 Score: 53
Period size: 15 Copynumber: 5.0 Consensus size: 15
80612 ATTCAATACA
*
80622 TTTAATTTAATTAAT
1 TTTAATTAAATTAAT
*
80637 TTTAATTAAATTAAA
1 TTTAATTAAATTAAT
* *
80652 TCT-ATT-CATT-AT
1 TTTAATTAAATTAAT
*
80664 CTTTAATT-AATAAAT
1 -TTTAATTAAATTAAT
*
80679 ATTAATTAAATTAAT
1 TTTAATTAAATTAAT
80694 GTAACTATAA
Statistics
Matches: 43, Mismatches: 10, Indels: 8
0.70 0.16 0.13
Matches are distributed among these distances:
12 1 0.02
13 5 0.12
14 14 0.33
15 23 0.53
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.51
Consensus pattern (15 bp):
TTTAATTAAATTAAT
Found at i:82034 original size:25 final size:25
Alignment explanation
Indices: 81986--82063 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
81976 TAATAAATTT
*
81986 TATTTTATATAAATT-TA-T-TCAAA
1 TATTTTATAT-AATTATAGTATTAAA
82009 TATTTTATATAATTATAGTATTAAA
1 TATTTTATATAATTATAGTATTAAA
** *
82034 TATTATTA-ATAAAAATAGTAATAATA
1 TATT-TTATATAATTATAGTATTAA-A
82060 TATT
1 TATT
82064 ACTTAATTAA
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
22 4 0.09
23 12 0.26
24 1 0.02
25 21 0.46
26 8 0.17
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.49
Consensus pattern (25 bp):
TATTTTATATAATTATAGTATTAAA
Found at i:82079 original size:21 final size:20
Alignment explanation
Indices: 82054--82092 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
82044 AAAAATAGTA
82054 ATAATATATTACTTAATTAAT
1 ATAATATA-TACTTAATTAAT
*
82075 ATAATATATATTTAATTA
1 ATAATATATACTTAATTA
82093 TAACATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
ATAATATATACTTAATTAAT
Found at i:82873 original size:7 final size:8
Alignment explanation
Indices: 82855--82895 Score: 50
Period size: 7 Copynumber: 5.1 Consensus size: 8
82845 TAATAATATA
82855 TTAATAAT
1 TTAATAAT
82863 TTAAT-AT
1 TTAATAAT
82870 TTAATAAT
1 TTAATAAT
82878 TTATTATAA-
1 TTA--ATAAT
82887 TTAATAAT
1 TTAATAAT
82895 T
1 T
82896 ATTTATATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
7 11 0.38
8 11 0.38
9 3 0.10
10 4 0.14
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (8 bp):
TTAATAAT
Found at i:82882 original size:26 final size:24
Alignment explanation
Indices: 82844--82892 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
82834 TACAAATTAA
82844 TTAATAATATATTAATAATTTAATAT
1 TTAATAATATATT-ATAA-TTAATAT
*
82870 TTAATAATTTATTATAATTAATA
1 TTAATAATATATTATAATTAATA
82893 ATTATTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.27
25 4 0.18
26 12 0.55
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
TTAATAATATATTATAATTAATAT
Found at i:83240 original size:18 final size:18
Alignment explanation
Indices: 83187--83240 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
83177 ACATACTTAT
83187 TTAATT-AT-TATAGTATA
1 TTAATTAATATATAGTA-A
* *
83204 TTAAGTAAAATACTA-TAA
1 TTAATTAATATA-TAGTAA
83222 TTAATTAATATATAGTAA
1 TTAATTAATATATAGTAA
83240 T
1 T
83241 GATTAAATCT
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
17 7 0.24
18 16 0.55
19 4 0.14
20 2 0.07
ACGTcount: A:0.48, C:0.02, G:0.06, T:0.44
Consensus pattern (18 bp):
TTAATTAATATATAGTAA
Found at i:83300 original size:14 final size:15
Alignment explanation
Indices: 83274--83302 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
83264 TGCTTATTTT
83274 TTAATATAATAATTG
1 TTAATATAATAATTG
83289 TTAATA-AATAATTG
1 TTAATATAATAATTG
83303 ATTTAAGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (15 bp):
TTAATATAATAATTG
Found at i:83953 original size:14 final size:15
Alignment explanation
Indices: 83934--84094 Score: 66
Period size: 15 Copynumber: 10.9 Consensus size: 15
83924 AGAAATATTA
83934 TAATATATTTAT-AT
1 TAATATATTTATAAT
83948 TAATATA-TTATAAT
1 TAATATATTTATAAT
* *
83962 TAATAAAATTATTAA-
1 TAATATATTTA-TAAT
* *
83977 TATTAAATTTATAAT
1 TAATATATTTATAAT
* * *
83992 TAATATAATTAACAAA
1 TAATAT-ATTTATAAT
* * *
84008 TATTTTTATTTGTAAT
1 TA-ATATATTTATAAT
* * * *
84024 GAATAAATATATTTAT
1 TAATATATTTA-TAAT
84040 TAATAT-TTTATTAAT
1 TAATATATTTA-TAAT
*
84055 TAAT-TAATT-TAAT
1 TAATATATTTATAAT
* *
84068 TAAT-TATATACAAT
1 TAATATATTTATAAT
*
84082 TCATATATTTATA
1 TAATATATTTATA
84095 TACAAAATAT
Statistics
Matches: 105, Mismatches: 32, Indels: 19
0.67 0.21 0.12
Matches are distributed among these distances:
13 15 0.14
14 25 0.24
15 39 0.37
16 24 0.23
17 2 0.02
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.50
Consensus pattern (15 bp):
TAATATATTTATAAT
Found at i:83991 original size:30 final size:32
Alignment explanation
Indices: 83939--84002 Score: 96
Period size: 30 Copynumber: 2.1 Consensus size: 32
83929 TATTATAATA
*
83939 TATTTATATTAATATATTATAATTAATAAAAT
1 TATTAATATTAATATATTATAATTAATAAAAT
*
83971 TATTAATATTAA-AT-TTATAATTAATATAAT
1 TATTAATATTAATATATTATAATTAATAAAAT
84001 TA
1 TA
84003 ACAAATATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 17 0.57
31 2 0.07
32 11 0.37
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (32 bp):
TATTAATATTAATATATTATAATTAATAAAAT
Found at i:84409 original size:10 final size:10
Alignment explanation
Indices: 84367--84428 Score: 60
Period size: 10 Copynumber: 6.5 Consensus size: 10
84357 AATTATCGTA
84367 ATAATAATAT
1 ATAATAATAT
*
84377 GTCAAT-AT-T
1 AT-AATAATAT
*
84386 ACAATAAT-T
1 ATAATAATAT
84395 ATAATAATAT
1 ATAATAATAT
84405 ATAATAATAT
1 ATAATAATAT
*
84415 TTAATAATAT
1 ATAATAATAT
84425 -TAAT
1 ATAAT
84429 CTAATTTAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
8 3 0.07
9 15 0.34
10 23 0.52
11 3 0.07
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (10 bp):
ATAATAATAT
Found at i:84451 original size:10 final size:10
Alignment explanation
Indices: 84396--84452 Score: 53
Period size: 10 Copynumber: 5.4 Consensus size: 10
84386 ACAATAATTA
*
84396 TAATAATATA
1 TAATAATATT
84406 TAATAATATT
1 TAATAATATT
84416 TAATAATA-T
1 TAATAATATT
*
84425 TAATCTAATTTAAT
1 TAA--TAA--TATT
84439 TAATAATATT
1 TAATAATATT
84449 TAAT
1 TAAT
84453 CTTCATTTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
9 4 0.10
10 24 0.60
11 3 0.08
12 3 0.08
13 2 0.05
14 4 0.10
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (10 bp):
TAATAATATT
Found at i:84467 original size:24 final size:23
Alignment explanation
Indices: 84417--84467 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
84407 AATAATATTT
*
84417 AATAATATTAATCTAATTTAATT
1 AATAATATTAATCTAATTTAATA
*
84440 AATAATATTTAATCTTCATTT-ATA
1 AATAATA-TTAATC-TAATTTAATA
84464 AATA
1 AATA
84468 TAGTATAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 7 0.29
24 12 0.50
25 5 0.21
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (23 bp):
AATAATATTAATCTAATTTAATA
Found at i:84530 original size:19 final size:20
Alignment explanation
Indices: 84506--84547 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
84496 AATAATTTTC
*
84506 AAAATATTATTAACTATT-T
1 AAAATAATATTAACTATTAT
*
84525 AAAATAATATTTACTATTAT
1 AAAATAATATTAACTATTAT
84545 AAA
1 AAA
84548 CAACAATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (20 bp):
AAAATAATATTAACTATTAT
Found at i:84747 original size:15 final size:15
Alignment explanation
Indices: 84729--84758 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
84719 ATTCTAATCT
*
84729 ATTATAATTATAATA
1 ATTATAATTACAATA
84744 ATTATAATTACAATA
1 ATTATAATTACAATA
84759 TTACAAAAGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (15 bp):
ATTATAATTACAATA
Found at i:85516 original size:182 final size:181
Alignment explanation
Indices: 85011--85583 Score: 571
Period size: 182 Copynumber: 3.2 Consensus size: 181
85001 TTAATAAGAC
* * * *
85011 AATTAACAAGTAAAAG-ATTTAAAAAATAAATCTATTTATTGAACAAATTCAAATCA-TTATGAC
1 AATTAAAAAGTAAAAGAATTTAAAAAATAAATATGTTTATCGAACAAATTCAAAT-AGTTATGAC
* * * * *
85074 TATCTGAATAATTATTTATTTCAAATTC-TTATGACTTTTTTGTTTTGTCATGAAACAATTGTTT
65 TATCTTAATAATTATCTATTTCAAA-TCATTATAAC-ATTTTGTTTTGTCATAAAACAATTGTTT
* * * * * * * *
85138 CTATCCATATGAGTTTATTTGGATTAAAATAATATTGATTTATTAATATTTCAAC
128 CTATTCATATAAGCTTATTTGAAATAAAATAATA-TAATTTATTAATATTCCAAA
** * * *
85193 AATTAATAAA-TAAAAGCCTTTTAAAAAAT--A-A-GTTTA-CTAAACAAGTTCAAATAGTCATG
1 AATTAA-AAAGTAAAAG-AATTTAAAAAATAAATATGTTTATC-GAACAAATTCAAATAGTTATG
* * * *
85252 ACTAT-TTGAATAATTATCTACTTCAAATCATTGTAACATTTTGTTTTGTAATAAAATAATTGTT
63 ACTATCTT-AATAATTATCTATTTCAAATCATTATAACATTTTGTTTTGTCATAAAACAATTGTT
* * *
85316 TCAATTCATGTTAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCCAAA
127 TCTATTCATATAAGCTTATTTGAAATAAAATAATA-TAATTTATTAATATTCCAAA
* * * *
85372 AATTAAAAAGTAAGAGAATTAAAAAAATAAATATGTTTATCGAACAATTTCAAATAGTTATAACT
1 AATTAAAAAGTAAAAGAATTTAAAAAATAAATATGTTTATCGAACAAATTCAAATAGTTATGACT
* * * *
85437 ATCTTAATAATTATCTATTTCAAAACATTACAACCTTTTGTTTTGTCATAAAACAATTGGTTCTA
66 ATCTTAATAATTATCTATTTCAAATCATTATAACATTTTGTTTTGTCATAAAACAATTGTTTCTA
* *
85502 TTCAT-TCAAGCTTATTT-AAAAAATAATAATATAAATTTATTAATGTTCCAAA
131 TTCATAT-AAGCTTATTTGAAATAA-AATAATAT-AATTTATTAATATTCCAAA
* *
85554 AATTAATAAGT-AAA-AATTTTAAAAATAAAT
1 AATTAAAAAGTAAAAGAATTTAAAAAATAAAT
85584 TTATTTAAAA
Statistics
Matches: 322, Mismatches: 52, Indels: 36
0.79 0.13 0.09
Matches are distributed among these distances:
178 12 0.04
179 83 0.26
180 62 0.19
181 10 0.03
182 140 0.43
183 5 0.02
184 10 0.03
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.40
Consensus pattern (181 bp):
AATTAAAAAGTAAAAGAATTTAAAAAATAAATATGTTTATCGAACAAATTCAAATAGTTATGACT
ATCTTAATAATTATCTATTTCAAATCATTATAACATTTTGTTTTGTCATAAAACAATTGTTTCTA
TTCATATAAGCTTATTTGAAATAAAATAATATAATTTATTAATATTCCAAA
Found at i:85859 original size:296 final size:300
Alignment explanation
Indices: 85339--85879 Score: 632
Period size: 296 Copynumber: 1.8 Consensus size: 300
85329 GCTTATTTGA
85339 AATAAAATAATACTAATTTATTAATATTCCAAAAATTAAAAAGTAAGAGAATTAAAAAAATAAAT
1 AATAAAATAATACTAATTTATTAATATTCCAAAAATT--AAAGTAAGAGAATTAAAAAAATAAAT
* * * * *
85404 ATGTTTATCGAACAATTTCAAATAGTTATAACTATCTTAATAATTATCTATTTCAAAACATTACA
64 ATCTTTATCAAACAAGTTCAAATAGTTATAACTATCTTAACAATTATCTATCTCAAAACATTACA
* * *
85469 ACCTTTTGTTTTGTCATAAAACAATTGGTTCTATTCATTCAAGCTTATTTAAAAAATAATAATAT
129 ACCTTTTGTTTTGTCATAAAACAATTAGTTCTATTCATACAAGCTTATTCAAAAAATAATAATAT
* * *
85534 AAATTTATTAATGTTCCAAAAATTAATAAGTAAAAATTTTAAAAATAAATTTATTTAAAAATTAA
194 AAATTTAATAATGATCCAAAAATTAATAAGTAAAAATTTAAAAAATAAATTTATTTAAAAATTAA
85599 TGTTCCAAAACCAATTGTTTCTATTCATATAAAATTATTCAG
259 TGTTCCAAAACCAATTGTTTCTATTCATATAAAATTATTCAG
* * * ** * * *
85641 AATAAAATAATATTATTTTATTACTATTTTAAAAATT-AA-TAAGAG-ATTTAAAAACTAAATCT
1 AATAAAATAATACTAATTTATTAATATTCCAAAAATTAAAGTAAGAGAATTAAAAAAATAAATAT
* * *** **
85703 CTTTATCAAACCAGTTCAAATAGTTATAACTAT-TTGAACAATTATCTATCTCCAATTGTTATGA
66 CTTTATCAAACAAGTTCAAATAGTTATAACTATCTT-AACAATTATCTATCTCAAAACATTACAA
* * * * * *
85767 -TTTTTGTTTTGTCCTAAAACATTTAATTTCTATTCA-ACAAGCTTATTCAAAGTAA-AATACTG
130 CCTTTTGTTTTGTCATAAAACAATT-AGTTCTATTCATACAAGCTTATTCAAA-AAATAATAAT-
* * **
85829 CT-AATTTAATAAT-ATCCTAAACATTAATAAGTAAGGATTTAAAAAATAAAT
192 ATAAATTTAATAATGATCC-AAAAATTAATAAGTAAAAATTTAAAAAATAAAT
85880 GTGTTAGAAT
Statistics
Matches: 198, Mismatches: 36, Indels: 16
0.79 0.14 0.06
Matches are distributed among these distances:
295 3 0.02
296 80 0.40
297 75 0.38
298 6 0.03
299 2 0.01
302 32 0.16
ACGTcount: A:0.45, C:0.10, G:0.06, T:0.39
Consensus pattern (300 bp):
AATAAAATAATACTAATTTATTAATATTCCAAAAATTAAAGTAAGAGAATTAAAAAAATAAATAT
CTTTATCAAACAAGTTCAAATAGTTATAACTATCTTAACAATTATCTATCTCAAAACATTACAAC
CTTTTGTTTTGTCATAAAACAATTAGTTCTATTCATACAAGCTTATTCAAAAAATAATAATATAA
ATTTAATAATGATCCAAAAATTAATAAGTAAAAATTTAAAAAATAAATTTATTTAAAAATTAATG
TTCCAAAACCAATTGTTTCTATTCATATAAAATTATTCAG
Found at i:87203 original size:38 final size:39
Alignment explanation
Indices: 87151--87224 Score: 105
Period size: 38 Copynumber: 1.9 Consensus size: 39
87141 TATTTAAAGA
**
87151 TTTGTTTGTCATAAAACAAT-TGTTTTTATTAATATAAG
1 TTTGTTTGAAATAAAACAATATGTTTTTATTAATATAAG
* *
87189 TTTGTTTGAAATAAAATAATATTTTTTTATTAATAT
1 TTTGTTTGAAATAAAACAATATGTTTTTATTAATAT
87225 TTAGAAAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
38 17 0.55
39 14 0.45
ACGTcount: A:0.36, C:0.03, G:0.08, T:0.53
Consensus pattern (39 bp):
TTTGTTTGAAATAAAACAATATGTTTTTATTAATATAAG
Found at i:87599 original size:42 final size:41
Alignment explanation
Indices: 87553--87673 Score: 112
Period size: 37 Copynumber: 3.1 Consensus size: 41
87543 TATTAAAATT
*
87553 ATAAATTAATATTTATATAATATTATATTAATTAATTAACTA
1 ATAAA-TAATATTTATATTATATTATATTAATTAATTAACTA
* * *
87595 ATAAATAATAGTTAT-TTATATT-TAATAACT-ATT-ACT-
1 ATAAATAATATTTATATTATATTATATTAATTAATTAACTA
* * *
87631 ATTAATATATATTAATATTA-ATTATATAAATTAATTAA-TA
1 ATAAATA-ATATTTATATTATATTATATTAATTAATTAACTA
87671 ATA
1 ATA
87674 TTTATTATAT
Statistics
Matches: 62, Mismatches: 11, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
36 6 0.10
37 12 0.19
38 11 0.18
39 10 0.16
40 9 0.15
41 9 0.15
42 5 0.08
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.47
Consensus pattern (41 bp):
ATAAATAATATTTATATTATATTATATTAATTAATTAACTA
Found at i:87637 original size:16 final size:16
Alignment explanation
Indices: 87624--87665 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
87614 ATTTAATAAC
*
87624 TATTACTATTAATATA
1 TATTAATATTAATATA
87640 TATTAATATTAAT-TA
1 TATTAATATTAATATA
87655 TA-TAA-ATTAAT
1 TATTAATATTAAT
87666 TAATAATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 6 0.24
14 3 0.12
15 4 0.16
16 12 0.48
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (16 bp):
TATTAATATTAATATA
Found at i:87682 original size:68 final size:68
Alignment explanation
Indices: 87557--87683 Score: 168
Period size: 68 Copynumber: 1.9 Consensus size: 68
87547 AAAATTATAA
* *
87557 ATTAATATTTATATAATATTATATTAATTAATTAACTAATAAATAATAGTTATTTATATTTAATA
1 ATTAATATTAATATAATATTATATTAATTAATAAACTAATAAATAATAGTTATTTATATTTAATA
87622 ACT
66 ACT
* * * *
87625 ATTACTATTAATAT-ATATTAATATTAATTATATAAATTAATTAATAATATTTA-TTATAT
1 ATTAATATTAATATAATATT-ATATTAATTA-ATAAACTAATAAATAATAGTTATTTATAT
87684 GCTATCTTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
67 5 0.10
68 28 0.55
69 18 0.35
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.50
Consensus pattern (68 bp):
ATTAATATTAATATAATATTATATTAATTAATAAACTAATAAATAATAGTTATTTATATTTAATA
ACT
Found at i:87895 original size:14 final size:15
Alignment explanation
Indices: 87872--87907 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
87862 ATAATGATTA
*
87872 TATTATTATAATA-T
1 TATTAATATAATAGT
87886 TATTAATATAATAGT
1 TATTAATATAATAGT
87901 TATTAAT
1 TATTAAT
87908 TATTTTAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (15 bp):
TATTAATATAATAGT
Found at i:88027 original size:21 final size:22
Alignment explanation
Indices: 87976--88031 Score: 66
Period size: 21 Copynumber: 2.7 Consensus size: 22
87966 TTATTCACAT
87976 TATAA-TATT-AATTATATAAA
1 TATAATTATTAAATTATATAAA
87996 TATAATTATTAAATT-TATAAA
1 TATAATTATTAAATTATATAAA
*
88017 -ATTATTAATTAAATT
1 TATAATT-ATTAAATT
88032 GTCAATGAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
20 10 0.31
21 18 0.56
22 4 0.12
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
TATAATTATTAAATTATATAAA
Found at i:88205 original size:11 final size:11
Alignment explanation
Indices: 88189--88222 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
88179 TAATAATTTT
88189 TATTAATATAA
1 TATTAATATAA
*
88200 TATTAATATTA
1 TATTAATATAA
*
88211 TAATAATATAA
1 TATTAATATAA
88222 T
1 T
88223 TATAAAGTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
TATTAATATAA
Found at i:88549 original size:21 final size:21
Alignment explanation
Indices: 88520--88565 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
88510 AAATATATTA
* *
88520 ATTATATTAATAA-TTATTAAT
1 ATTAAATT-ATAATTTATAAAT
88541 ATTAAATTATAATTTATAAAT
1 ATTAAATTATAATTTATAAAT
88562 ATTA
1 ATTA
88566 TTTAGATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATTAAATTATAATTTATAAAT
Found at i:88575 original size:30 final size:32
Alignment explanation
Indices: 88518--88578 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 32
88508 TCAAATATAT
* *
88518 TAATTATATTAATAATTATTAATATTAAATTA
1 TAATTATATAAATAATTATTAAGATTAAATTA
*
88550 TAATT-TATAAAT-ATTATTTAGATTAAATT
1 TAATTATATAAATAATTATTAAGATTAAATT
88579 TGTCTTACTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 15 0.58
31 6 0.23
32 5 0.19
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (32 bp):
TAATTATATAAATAATTATTAAGATTAAATTA
Found at i:88852 original size:21 final size:20
Alignment explanation
Indices: 88820--88865 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
88810 ATTTTATTTG
88820 ATTATTATTTAAAAATAATA
1 ATTATTATTTAAAAATAATA
* *
88840 ATTATTAATTTAATAATACTA
1 ATTATT-ATTTAAAAATAATA
88861 ATTAT
1 ATTAT
88866 GATAGTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 6 0.26
21 17 0.74
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (20 bp):
ATTATTATTTAAAAATAATA
Found at i:89146 original size:18 final size:18
Alignment explanation
Indices: 89120--89156 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
89110 AATTTAGTAA
*
89120 TATTTAATTAAATTAAAT
1 TATTAAATTAAATTAAAT
*
89138 TATTAAATTTAATTAAAT
1 TATTAAATTAAATTAAAT
89156 T
1 T
89157 CCCTAAATAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TATTAAATTAAATTAAAT
Found at i:89539 original size:19 final size:20
Alignment explanation
Indices: 89502--89539 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
89492 ACATTGATTT
*
89502 TTTTATTAATTATAATATAG
1 TTTTATTAATAATAATATAG
*
89522 TTTTA-TAATAATAGTATA
1 TTTTATTAATAATAATATA
89540 AATTTAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (20 bp):
TTTTATTAATAATAATATAG
Found at i:89696 original size:39 final size:34
Alignment explanation
Indices: 89653--89731 Score: 86
Period size: 34 Copynumber: 2.2 Consensus size: 34
89643 TAATTATATG
*
89653 TAATAAATCAATACTAATTGTTAATAAGTTATTAACTTA
1 TAATAAAT-AATACT-ATT-TTAATAAG--ATTAAATTA
* *
89692 TAATAAATAATAGTATTTTTATAAGATTAAATTA
1 TAATAAATAATACTATTTTAATAAGATTAAATTA
89726 TAATAA
1 TAATAA
89732 TTATATTATT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
34 14 0.38
36 7 0.19
37 3 0.08
38 5 0.14
39 8 0.22
ACGTcount: A:0.49, C:0.04, G:0.05, T:0.42
Consensus pattern (34 bp):
TAATAAATAATACTATTTTAATAAGATTAAATTA
Found at i:90513 original size:358 final size:355
Alignment explanation
Indices: 89976--90716 Score: 788
Period size: 358 Copynumber: 2.1 Consensus size: 355
89966 TATGCTTTTG
* *
89976 TTTAGTCATAAAACAATTATTTTAGTTCACACAAGCTTATTTGGAATAAAATAATACTAATTTAT
1 TTTAGTCATAAAACAATTATTTTAG-TCACACAAGCTTATTTAGAATAAAATAATACTAATTTAA
* *
90041 TAACATTCAAAAAATTAAATAAGAGATTTAAAAAATAAATCTATTTACTGAACAATTTCAAATAG
65 TAACATTCAAAAAATTAAATAAGAGATTTAAAAAATAAATCTATTTACCGAACAAGTTCAAATAG
* * * * ** *
90106 ATATGACTATTTAAATAATTATCTGTTTAAAATTATTTTGACATTTTGTTTTGTCATGAAACAAT
130 ATAAGACTATTTAAATAATTATCTATTTAAAATCATTCTGACATTTTGTTTAATCATCAAACAAT
* * *
90171 TGTTTCAGTTAATAAAAACTTATTTGAAATAAAATAATACTACTTTATTAA-TATTTAAAAAATT
195 TGTTTCAGTTAATAAAAACTTA--TCAAAGAAAATAATACTAATTTATTAACT-TTTAAAAAATT
* *
90235 ATTAAGCAAGAGATTT-AAAAACTAAAACTGTTTTT-CAAAAGC-AGTTCTAATAATTATGACTA
257 AATAAGCAAGAGATTTGAAAAACT-AAA-T-TTTTTACAAAA-CAAGTTCAAATAATTATGACTA
90297 TTTGAATAAATATTAATCTTAAATCGTTATGATCTTGT
318 TTTGAATAAATATTAATCTTAAATCGTTATGATCTTGT
* * *
90335 TTTA-TCATAAAACAATTTTTTTTA-TCATATAAGCTTATTTAG-ATAAAAATAATACTAATTTA
1 TTTAGTCATAAAACAA-TTATTTTAGTCACACAAGCTTATTTAGAAT-AAAATAATACTAATTTA
* * * * * * * *
90397 ATAATATTTTGAAATTAA-TAAGTAAGAGATTTAAAAAATAAATGTGTTTGCCGATC-AGTTCAA
64 ATAACA--TTCAAA-AAATTAAATAAGAGATTTAAAAAATAAATCTATTTACCGAACAAGTTCAA
* * * * *
90460 ATAGTTAAGATTA-TTAGAATAATTATCTATTTTAAATCGTTCTGACCTTTTGTTTAATCATCAA
126 ATAGATAAGACTATTTA-AATAATTATCTATTTAAAATCATTCTGACATTTTGTTTAATCATCAA
* * * * * *
90524 ATAATTGTTTCAGTTCATATAAGCTTATCAAAGAAAATAATACTAATTTATTAACTTTTGAAAGA
190 ACAATTGTTTCAGTTAATAAAAACTTATCAAAGAAAATAATACTAATTTATTAACTTTTAAAAAA
* * * *
90589 TTAATAAGCAGGATATTTGAAAAACTAAATTTTTTACCAAACAAGTTCAAATAGTTATGACTATT
255 TTAATAAGCAAGAGATTTGAAAAACTAAATTTTTTACAAAACAAGTTCAAATAATTATGACTATT
** * * * *
90654 TGAGCAATTATCT-AT-TTAAAATCATTGTGAATTTTTGT
320 TGAATAAATAT-TAATCTT-AAATCGTTATG-A-TCTTGT
*
90692 TTT-GTCATAAAACAATTGTTTTAGT
1 TTTAGTCATAAAACAATTATTTTAGT
90717 TCAAAAAGTT
Statistics
Matches: 317, Mismatches: 49, Indels: 34
0.79 0.12 0.09
Matches are distributed among these distances:
354 8 0.03
355 44 0.14
356 60 0.19
357 67 0.21
358 88 0.28
359 48 0.15
360 2 0.01
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (355 bp):
TTTAGTCATAAAACAATTATTTTAGTCACACAAGCTTATTTAGAATAAAATAATACTAATTTAAT
AACATTCAAAAAATTAAATAAGAGATTTAAAAAATAAATCTATTTACCGAACAAGTTCAAATAGA
TAAGACTATTTAAATAATTATCTATTTAAAATCATTCTGACATTTTGTTTAATCATCAAACAATT
GTTTCAGTTAATAAAAACTTATCAAAGAAAATAATACTAATTTATTAACTTTTAAAAAATTAATA
AGCAAGAGATTTGAAAAACTAAATTTTTTACAAAACAAGTTCAAATAATTATGACTATTTGAATA
AATATTAATCTTAAATCGTTATGATCTTGT
Found at i:90544 original size:179 final size:180
Alignment explanation
Indices: 89802--90792 Score: 709
Period size: 178 Copynumber: 5.6 Consensus size: 180
89792 ATGATCTTTA
* ** * * ** *
89802 TTTTGTCATACAACAATTGTTTCCTTTCATACAAGCTTATTCAGATTAAAATGGTACTAATTTAA
1 TTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTTAGAATAAAATAATACTAATTTAT
* * *
89867 TAATA-TTTCAAA--AATTAA-TAAGA-ATTTAAAAAAT-AATATG-TTAGCTGAACTAGTTCAA
66 TAATATTTTCAAATTAA-TAAGTAAGAGATTTAAAAAATAAATGTGTTTA-CCGAACAAGTTCAA
** * * *
89925 ATAGTTAAAATTATCAGAATAATTATCTATTTT-AATCATTCT-ATGCTTTTG
129 ATAGTTATGACTATTAGAATAATTATCTATTTTAAATCATTCTGA-CCTTTTG
* * * * *
89976 TTTAGTCATAAAACAATTATTTTAGTTCACACAAGCTTATTTGGAATAAAATAATACTAATTTAT
1 TTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTTAGAATAAAATAATACTAATTTAT
* * * * * * *
90041 TAACA--TTCAAA-AAATTAAATAAGAGATTTAAAAAATAAATCTATTTACTGAACAATTTCAAA
66 TAATATTTTCAAATTAA-TAAGTAAGAGATTTAAAAAATAAATGTGTTTACCGAACAAGTTCAAA
* * * * * *
90103 TAGATATGACTATTTA-AATAATTATCTGTTTAAAATTATTTTGACATTTTG
130 TAGTTATGACTA-TTAGAATAATTATCTATTTTAAATCATTCTGACCTTTTG
* * * * *
90154 TTTTGTCATGAAACAATTGTTTCAGTTAATAAAAACTTATTT-GAAATAAAATAATACTACTTTA
1 TTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTTAG-AATAAAATAATACTAATTTA
** * * * * **
90218 TTAATATTTAAAAAATTATTAAGCAAGAGATTTAAAAACTAAAACTGT-TTTTCAAAAGC-AGTT
65 TTAATATTT-TCAAATTAATAAGTAAGAGATTTAAAAAAT-AAA-TGTGTTTACCGAA-CAAGTT
* * * * * * * *
90281 CTAATAATTATGACTATTTGAATAAATAT-TAATCTTAAATCGTTATGA--TCTTG
126 CAAATAGTTATGACTATTAGAATAATTATCT-ATTTTAAATCATTCTGACCTTTTG
* ** *
90334 TTTTATCATAAAACAATT-TTT-TTTATCATATAAGCTTATTTAG-ATAAAAATAATACTAATTT
1 TTTTGTCATAAAACAATTGTTTCAGT-TCATACAAGCTTATTTAGAAT-AAAATAATACTAATTT
* * * *
90396 AATAATATTTTGAAATTAATAAGTAAGAGATTTAAAAAATAAATGTGTTTGCCGATC-AGTTCAA
64 ATTAATATTTTCAAATTAATAAGTAAGAGATTTAAAAAATAAATGTGTTTACCGAACAAGTTCAA
* * *
90460 ATAGTTAAGATTATTAGAATAATTATCTATTTTAAATCGTTCTGACCTTTTG
129 ATAGTTATGACTATTAGAATAATTATCTATTTTAAATCATTCTGACCTTTTG
** * * * * *
90512 TTTAATCATCAAATAATTGTTTCAGTTCATATAAGCTTA-TCA-AAGAAAATAATACTAATTTAT
1 TTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTTAGAATAAAATAATACTAATTTAT
** * * * * * *
90575 TAACT-TTTGAAAGATTAATAAGCAGGATATTTGAAAAACTAAAT-TTTTTACCAAACAAGTTCA
66 TAA-TATTTTCAA-ATTAATAAGTAAGAGATTT-AAAAAATAAATGTGTTTACCGAACAAGTTCA
* ** * * **
90638 AATAGTTATGACTATTTGAGCAATTATCTATTTAAAATCATTGTGAATTTTTG
128 AATAGTTATGACTATTAGAATAATTATCTATTTTAAATCATTCTGACCTTTTG
* * * ** * *
90691 TTTTGTCATAAAACAATTGTTTTAGTTCA-AAAAGTTTATCCAAAAATAAAATAATACTACTTTT
1 TTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTAT-TTAGAATAAAATAATACTA-ATTT
* *
90755 CTTAATATTTT-GAA--AAT---TAAGAGATTTAAAAAATAAAT
64 ATTAATATTTTCAAATTAATAAGTAAGAGATTTAAAAAATAAAT
90793 TAATTTATTA
Statistics
Matches: 644, Mismatches: 136, Indels: 74
0.75 0.16 0.09
Matches are distributed among these distances:
173 6 0.01
174 72 0.11
175 12 0.02
176 57 0.09
177 74 0.11
178 160 0.25
179 140 0.22
180 25 0.04
181 40 0.06
182 55 0.09
183 3 0.00
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (180 bp):
TTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTTAGAATAAAATAATACTAATTTAT
TAATATTTTCAAATTAATAAGTAAGAGATTTAAAAAATAAATGTGTTTACCGAACAAGTTCAAAT
AGTTATGACTATTAGAATAATTATCTATTTTAAATCATTCTGACCTTTTG
Found at i:90692 original size:537 final size:533
Alignment explanation
Indices: 89792--90773 Score: 1232
Period size: 537 Copynumber: 1.8 Consensus size: 533
89782 ATCAATCATA
* * * **
89792 ATGATCTTTATTTTGTCATACAACAATTGTTTCCTTTCATACAAGCTTATTCAGATTAAAATGGT
1 ATGATCTTTATTTTATCATAAAACAATTGTTTCCTTTCATACAAGCTTATTCAGATAAAAATAAT
*
89857 ACTAATTTAATAATATTTCAAAAATTAATAAGAATTTAAAAAATAATATGTTAGCTGAACTAGTT
66 ACTAATTTAATAATATTTCAAAAATTAATAAGAATTTAAAAAATAATATGTTAGCCGAACTAGTT
* *
89922 CAAATAGTTAAAATTATCAGAATAATTATCTATTTTAATCATTCTATGCTTTTGTTTAGTCATAA
131 CAAATAGTTAAAATTATCAGAATAATTATCTATTTTAATCATTCTATCCTTTTGTTTAATCATAA
* ** *
89987 AACAATTATTTTAGTTCACACAAGCTTATTTGGAATAAAATAATACTAATTTATTAACATTCAAA
196 AACAATTATTTCAGTTCACACAAGCTTA-TTCAAAGAAAATAATACTAATTTATTAACATTCAAA
** *
90052 AAATTAAATAAGAGATTTAAAAAATAAATCTATTTACTGAACAATTTCAAATAGATATGACTATT
260 AAATTAAATAAGAGATTTAAAAAATAAATCTATTTACCAAACAAGTTCAAATAGATATGACTATT
* * * * *
90117 TAAATAATTATCTGTTTAAAATTATTTTGACATTTTGTTTTGTCATGAAACAATTGTTTCAGTTA
325 TAAACAATTATCTATTTAAAATCATTGTGACATTTTGTTTTGTCATAAAACAATTGTTTCAGTTA
***
90182 ATAAAAACTTAT-TTGAAATAAAATAATACTAC-TTTATTAATATTTAAAAAATTATTAAGCAAG
390 A-AAAAACTTATCCAAAAATAAAATAATACTACTTTTATTAATATTTAAAAAATTATTAAGCAAG
90245 AGATTTAAAAACTAAAACTGTTTTTCAAAAGCAGTTCTAATAATTATGACTATTTGAATAAATAT
454 AGATTTAAAAACTAAAACTGTTTTTCAAAAGCAGTTCTAATAATTATGACTATTTGAATAAATAT
90310 TAATCTTAAATCGTT
519 TAATCTTAAATCGTT
* * * *
90325 ATGATC-TTGTTTTATCATAAAACAATT-TTT-TTTATCATATAAGCTTATTTAGATAAAAATAA
1 ATGATCTTTATTTTATCATAAAACAATTGTTTCCTT-TCATACAAGCTTATTCAGATAAAAATAA
* * *
90387 TACTAATTTAATAATATTTTGAAATTAA-TAAGTAAGAGATTTAAAAAATAAATGTGTTTGCCGA
65 TACTAATTTAATAATA-TTTCAAA--AATTAA-TAAGA-ATTTAAAAAAT-AATATGTTAGCCGA
* * * *
90451 TC-AGTTCAAATAGTTAAGATTATTAGAATAATTATCTATTTTAAATCGTTCTGA-CCTTTTGTT
124 ACTAGTTCAAATAGTTAAAATTATCAGAATAATTATCTATTTT-AATCATTCT-ATCCTTTTGTT
* * * * *
90514 TAATCATCAAATAATTGTTTCAGTTCATATAAGCTTA-TCAAAGAAAATAATACTAATTTATTAA
187 TAATCATAAAACAATTATTTCAGTTCACACAAGCTTATTCAAAGAAAATAATACTAATTTATTAA
* ** * * *
90578 CTTTTGAAAGATT-AATAAGCAGGATATTTGAAAAACTAAAT-TTTTTACCAAACAAGTTCAAAT
252 CATTCAAAAAATTAAATAAG-A-G--ATTT-AAAAAATAAATCTATTTACCAAACAAGTTCAAAT
* * *
90641 AGTTATGACTATTTGAGCAATTATCTATTTAAAATCATTGTGA-ATTTTTGTTTTGTCATAAAAC
312 AGATATGACTATTTAAACAATTATCTATTTAAAATCATTGTGACA-TTTTGTTTTGTCATAAAAC
* * ** * **
90705 AATTGTTTTAGTTCAAAAAGTTTATCCAAAAATAAAATAATACTACTTTTCTTAATATTTTGAAA
376 AATTGTTTCAGTTAAAAAAACTTATCCAAAAATAAAATAATACTACTTTTATTAATATTTAAAAA
90770 ATTA
441 ATTA
90774 AGAGATTTAA
Statistics
Matches: 377, Mismatches: 55, Indels: 29
0.82 0.12 0.06
Matches are distributed among these distances:
530 2 0.01
531 42 0.11
532 24 0.06
533 15 0.04
534 41 0.11
535 50 0.13
536 67 0.18
537 107 0.28
538 29 0.08
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (533 bp):
ATGATCTTTATTTTATCATAAAACAATTGTTTCCTTTCATACAAGCTTATTCAGATAAAAATAAT
ACTAATTTAATAATATTTCAAAAATTAATAAGAATTTAAAAAATAATATGTTAGCCGAACTAGTT
CAAATAGTTAAAATTATCAGAATAATTATCTATTTTAATCATTCTATCCTTTTGTTTAATCATAA
AACAATTATTTCAGTTCACACAAGCTTATTCAAAGAAAATAATACTAATTTATTAACATTCAAAA
AATTAAATAAGAGATTTAAAAAATAAATCTATTTACCAAACAAGTTCAAATAGATATGACTATTT
AAACAATTATCTATTTAAAATCATTGTGACATTTTGTTTTGTCATAAAACAATTGTTTCAGTTAA
AAAAACTTATCCAAAAATAAAATAATACTACTTTTATTAATATTTAAAAAATTATTAAGCAAGAG
ATTTAAAAACTAAAACTGTTTTTCAAAAGCAGTTCTAATAATTATGACTATTTGAATAAATATTA
ATCTTAAATCGTT
Found at i:90939 original size:21 final size:22
Alignment explanation
Indices: 90905--90951 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
90895 TATTTAATTT
90905 TATTATATATAATTCTTTAAAG
1 TATTATATATAATTCTTTAAAG
* *
90927 TATTA-ATTTAATTCTTTAAAT
1 TATTATATATAATTCTTTAAAG
90948 TATT
1 TATT
90952 TTAAAATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.55
Consensus pattern (22 bp):
TATTATATATAATTCTTTAAAG
Found at i:90956 original size:10 final size:10
Alignment explanation
Indices: 90952--90994 Score: 61
Period size: 10 Copynumber: 4.4 Consensus size: 10
90942 TTAAATTATT
90952 TTAAAA-TAA
1 TTAAAATTAA
90961 TTAAAATTAA
1 TTAAAATTAA
90971 TTAAAATTAA
1 TTAAAATTAA
* *
90981 TTGAATTTAA
1 TTAAAATTAA
90991 TTAA
1 TTAA
90995 TTATTTTGGA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
9 6 0.20
10 24 0.80
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (10 bp):
TTAAAATTAA
Found at i:92232 original size:22 final size:23
Alignment explanation
Indices: 92214--92304 Score: 102
Period size: 21 Copynumber: 4.1 Consensus size: 23
92204 AACATATTAA
92214 TTTTAAACAAT-TAGTATATAAT
1 TTTTAAACAATATAGTATATAAT
*
92236 TTTTAAAC-ATATAATATATAA-
1 TTTTAAACAATATAGTATATAAT
92257 TTTTAAACATATATAGATATATAAT
1 TTTTAAACA-ATATAG-TATATAAT
* *
92282 TTTTAAA-AATTTA-TAAATAAT
1 TTTTAAACAATATAGTATATAAT
92303 TT
1 TT
92305 ACAATTAGTA
Statistics
Matches: 60, Mismatches: 4, Indels: 11
0.80 0.05 0.15
Matches are distributed among these distances:
21 19 0.32
22 17 0.28
23 9 0.15
24 8 0.13
25 7 0.12
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.46
Consensus pattern (23 bp):
TTTTAAACAATATAGTATATAAT
Found at i:92235 original size:21 final size:21
Alignment explanation
Indices: 92211--92320 Score: 88
Period size: 21 Copynumber: 5.2 Consensus size: 21
92201 CTTAACATAT
92211 TAATTTTAAACAATTAGTATA
1 TAATTTTAAACAATTAGTATA
*
92232 TAATTTTTAAAC-ATATAATATA
1 TAA-TTTTAAACAAT-TAGTATA
92254 TAATTTTAAACATATATAGATATA
1 TAATTTTAAACA-AT-TAG-TATA
*
92278 TAATTTTTAAA-AATTTA-TAAA
1 TAA-TTTTAAACAA-TTAGTATA
*
92299 TAA-TTT--ACAATTAGTATG
1 TAATTTTAAACAATTAGTATA
92317 TAAT
1 TAAT
92321 ATTATATATT
Statistics
Matches: 74, Mismatches: 5, Indels: 22
0.73 0.05 0.22
Matches are distributed among these distances:
17 4 0.05
18 7 0.09
19 3 0.04
21 19 0.26
22 17 0.23
23 8 0.11
24 9 0.12
25 7 0.09
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.45
Consensus pattern (21 bp):
TAATTTTAAACAATTAGTATA
Found at i:92476 original size:43 final size:45
Alignment explanation
Indices: 92405--92490 Score: 108
Period size: 42 Copynumber: 2.0 Consensus size: 45
92395 TTTAAAATAT
92405 AATAATTAAATTATAAATAGTATAATTT-ATAACAA-ATTTATTA
1 AATAATTAAATTATAAATAGTATAATTTAATAACAATATTTATTA
* *
92448 AATAATT-AATTATAAATA-TTTAACATTTAATTACAATATTTAT
1 AATAATTAAATTATAAATAGTAT-A-ATTTAATAACAATATTTAT
92491 AATTATATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
41 2 0.05
42 12 0.32
43 11 0.30
44 6 0.16
45 6 0.16
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.44
Consensus pattern (45 bp):
AATAATTAAATTATAAATAGTATAATTTAATAACAATATTTATTA
Found at i:92616 original size:25 final size:25
Alignment explanation
Indices: 92583--92643 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 25
92573 ATAGTTATTA
*
92583 ATAATTAATTAATTA-TAATTAAATAT
1 ATAA-TAATTAATAACTAATTAAAT-T
*
92609 ATAATAATT-ATAACCTAATTAAGTT
1 ATAATAATTAATAA-CTAATTAAATT
92634 ATAATAATTA
1 ATAATAATTA
92644 TTAAAATACA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
24 3 0.10
25 15 0.50
26 12 0.40
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (25 bp):
ATAATAATTAATAACTAATTAAATT
Found at i:92641 original size:14 final size:13
Alignment explanation
Indices: 92581--92665 Score: 59
Period size: 14 Copynumber: 6.2 Consensus size: 13
92571 TAATAGTTAT
92581 TAATAATTAATTAA
1 TAATAATTAATT-A
* *
92595 TTATAATTAAATA
1 TAATAATTAATTA
92608 T-ATAA-TAATTA
1 TAATAATTAATTA
92619 TAACCTAATTAAGTTA
1 TAA--TAATTAA-TTA
92635 TAATAATT-ATTA
1 TAATAATTAATTA
*
92647 AAATACATATTAATTA
1 TAAT--A-ATTAATTA
92663 TAA
1 TAA
92666 GTATCAAATA
Statistics
Matches: 57, Mismatches: 5, Indels: 16
0.73 0.06 0.21
Matches are distributed among these distances:
11 6 0.11
12 11 0.19
13 3 0.05
14 19 0.33
15 6 0.11
16 12 0.21
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (13 bp):
TAATAATTAATTA
Found at i:93201 original size:18 final size:19
Alignment explanation
Indices: 93178--93238 Score: 54
Period size: 18 Copynumber: 3.1 Consensus size: 19
93168 TTTGATTATC
93178 ATATAATATATAATTTAAT
1 ATATAATATATAATTTAAT
*
93197 A-ATAAT-TATCAATATAAATT
1 ATATAATATAT-AAT-TTAA-T
93217 ATATAATATACTTAATTTAAT
1 ATATAATATA--TAATTTAAT
93238 A
1 A
93239 GTTAATTGAC
Statistics
Matches: 33, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
17 3 0.09
18 8 0.24
19 4 0.12
20 2 0.06
21 7 0.21
22 5 0.15
23 3 0.09
24 1 0.03
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.44
Consensus pattern (19 bp):
ATATAATATATAATTTAAT
Found at i:93487 original size:6 final size:6
Alignment explanation
Indices: 93463--93550 Score: 63
Period size: 6 Copynumber: 13.8 Consensus size: 6
93453 ATTAGTATTC
* *
93463 TATAAA TATAAT ATAATAAT TATAAT TATTAT TATAAT TA-AAT TATAAT
1 TATAAT TATAAT -T-ATAAT TATAAT TATAAT TATAAT TATAAT TATAAT
* *
93512 ATATATT TATATAT TAATTAATT TATTAT TAT-AT TATAA
1 -TATAAT TATA-AT T-A-TAA-T TATAAT TATAAT TATAA
93551 ATTAAACTTA
Statistics
Matches: 67, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
5 10 0.15
6 34 0.51
7 11 0.16
8 8 0.12
9 4 0.06
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (6 bp):
TATAAT
Found at i:93493 original size:37 final size:37
Alignment explanation
Indices: 93448--93527 Score: 92
Period size: 37 Copynumber: 2.2 Consensus size: 37
93438 GTATTATAAG
**
93448 ATATTATTAGTATTCTATAAA-TATAATATAATAATTAT
1 ATATTATTAGTATAAT-TAAATTATAATAT-ATAATTAT
* *
93486 A-ATTATTATTATAATTAAATTATAATATATATTTAT
1 ATATTATTAGTATAATTAAATTATAATATATAATTAT
93522 ATATTA
1 ATATTA
93528 ATTAATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
36 12 0.33
37 23 0.64
38 1 0.03
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (37 bp):
ATATTATTAGTATAATTAAATTATAATATATAATTAT
Found at i:93501 original size:18 final size:18
Alignment explanation
Indices: 93478--93564 Score: 60
Period size: 18 Copynumber: 4.9 Consensus size: 18
93468 ATATAATATA
93478 ATAATTATAATTATTATT
1 ATAATTATAATTATTATT
*
93496 ATAATTA-AATTATAATAT
1 ATAATTATAATTATTAT-T
*
93514 ATATTTAT-A-TATTAATT
1 ATAATTATAATTATT-ATT
* *
93531 A-ATTTATTATTA-TATT
1 ATAATTATAATTATTATT
93547 ATAAATTA-AACTTATTAT
1 AT-AATTATAA-TTATTAT
93565 AAATTAATTT
Statistics
Matches: 55, Mismatches: 5, Indels: 17
0.71 0.06 0.22
Matches are distributed among these distances:
16 10 0.18
17 16 0.29
18 26 0.47
19 3 0.05
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (18 bp):
ATAATTATAATTATTATT
Found at i:93508 original size:23 final size:23
Alignment explanation
Indices: 93480--93582 Score: 85
Period size: 23 Copynumber: 4.6 Consensus size: 23
93470 ATAATATAAT
93480 AATTATAATTATTATTATAATTA
1 AATTATAATTATTATTATAATTA
93503 AATTATAA-TATATATTTATATATT-
1 AATTATAATTAT-TA-TTATA-ATTA
* *
93527 AATTA-ATTTATTATTATATTATA
1 AATTATAATTATTATTATAAT-TA
93550 AATTA-AACTTATTA-TA-AATTA
1 AATTATAA-TTATTATTATAATTA
*
93571 ATTTAT-ATTATT
1 AATTATAATTATT
93583 CAAATAATTA
Statistics
Matches: 67, Mismatches: 5, Indels: 19
0.74 0.05 0.21
Matches are distributed among these distances:
20 5 0.07
21 8 0.12
22 11 0.16
23 21 0.31
24 19 0.28
25 3 0.04
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (23 bp):
AATTATAATTATTATTATAATTA
Found at i:93592 original size:38 final size:40
Alignment explanation
Indices: 93518--93592 Score: 93
Period size: 39 Copynumber: 1.9 Consensus size: 40
93508 TAATATATAT
* * *
93518 TTATATATTAATTAATTTATTATTATATTATAAATTAAAC
1 TTATATATAAATTAATTTATTATTATATCAAAAATTAAAC
93558 TTAT-TATAAATTAATTTA-TATTAT-TCAAATAATTA
1 TTATATATAAATTAATTTATTATTATATCAAA-AATTA
93593 TATATAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
37 3 0.10
38 11 0.35
39 13 0.42
40 4 0.13
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (40 bp):
TTATATATAAATTAATTTATTATTATATCAAAAATTAAAC
Found at i:93801 original size:28 final size:29
Alignment explanation
Indices: 93756--93814 Score: 86
Period size: 27 Copynumber: 2.0 Consensus size: 29
93746 ATCTTTAATA
93756 AATTAATAATAAACTTATTGAACAATTATCT
1 AATTAAT-ATAAACTTATTGAA-AATTATCT
93787 AATTAAT-TAAA-TTATTGAAAATTATCT
1 AATTAATATAAACTTATTGAAAATTATCT
93814 A
1 A
93815 TTATAGTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
27 9 0.32
28 8 0.29
29 4 0.14
31 7 0.25
ACGTcount: A:0.49, C:0.07, G:0.03, T:0.41
Consensus pattern (29 bp):
AATTAATATAAACTTATTGAAAATTATCT
Found at i:94741 original size:23 final size:24
Alignment explanation
Indices: 94689--94741 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
94679 ATTTTATTTA
94689 ATTAA-ATATTTTTAATAATTATT
1 ATTAATATATTTTTAATAATTATT
* * *
94712 ATAAATATATTTTTACTTATTA-T
1 ATTAATATATTTTTAATAATTATT
94735 ATTAATA
1 ATTAATA
94742 CCTATAATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
23 11 0.44
24 14 0.56
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (24 bp):
ATTAATATATTTTTAATAATTATT
Found at i:98612 original size:8 final size:8
Alignment explanation
Indices: 98559--98684 Score: 64
Period size: 8 Copynumber: 15.1 Consensus size: 8
98549 ATAACAAACA
98559 ATTATAATT
1 ATTATAA-T
98568 ATTAGTAAT
1 ATTA-TAAT
98577 AATT-TAAT
1 -ATTATAAT
98585 A--A-AAT
1 ATTATAAT
*
98590 AGTTATAGT
1 A-TTATAAT
*
98599 AGTATAAT
1 ATTATAAT
98607 ATTATAAT
1 ATTATAAT
*
98615 AATATAA-
1 ATTATAAT
*
98622 ACTATAAT
1 ATTATAAT
98630 AATTATAAT
1 -ATTATAAT
98639 ATTATTTAAT
1 ATTA--TAAT
*
98649 TTTATTGAAT
1 ATTA-T-AAT
98659 ATTATAAT
1 ATTATAAT
*
98667 AATATAAAT
1 ATTAT-AAT
*
98676 ATTAAAAT
1 ATTATAAT
98684 A
1 A
98685 ATTAATACGA
Statistics
Matches: 92, Mismatches: 12, Indels: 27
0.70 0.09 0.21
Matches are distributed among these distances:
5 4 0.04
7 7 0.08
8 38 0.41
9 24 0.26
10 19 0.21
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.44
Consensus pattern (8 bp):
ATTATAAT
Found at i:98636 original size:40 final size:40
Alignment explanation
Indices: 98561--98636 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 40
98551 AACAAACAAT
* *
98561 TATAATTATTAGTAATAATTTAATAAAATAGTTATAGTAG
1 TATAATTATTAGTAATAATTAAATAAAATAATTATAGTAG
*
98601 TATAA-TATTA-TAATAATATAAACTATAATAATTATA
1 TATAATTATTAGTAATAAT-TAAA-TAAAATAATTATA
98637 ATATTATTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
38 7 0.23
39 8 0.26
40 16 0.52
ACGTcount: A:0.51, C:0.01, G:0.05, T:0.42
Consensus pattern (40 bp):
TATAATTATTAGTAATAATTAAATAAAATAATTATAGTAG
Done.