Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_019168491.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_89, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 101268
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42

Warning! 1000 characters in sequence are not A, C, G, or T


File 3 of 3

Found at i:98926 original size:25 final size:23

Alignment explanation


    Indices: 98875--98927  Score: 56
    Period size: 22  Copynumber: 2.4  Consensus size: 23

      98865 AATCTCTATA

                        *     *    
      98875 AATAAT-ATTATTTATATTATAT
          1 AATAATAATTATATATATAATAT

            *     *                
      98897 GATAATTATTATATATATAAT-T
          1 AATAATAATTATATATATAATAT

                     
      98919 AATAATAAT
          1 AATAATAAT

      98928 AAGTAATATT


Statistics
Matches: 25,  Mismatches: 5, Indels: 2
        0.78            0.16        0.06

Matches are distributed among these distances:
  22   13  0.52
  23   12  0.48

ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49


Consensus pattern (23 bp):   
AATAATAATTATATATATAATAT

Found at i:98997 original size:21 final size:19

Alignment explanation


    Indices: 98963--99013  Score: 57
    Period size: 21  Copynumber: 2.5  Consensus size: 19

      98953 GAGATTTAAA

                   *            
      98963 TATAAATCTTATTATGTATT
          1 TATAAATATTATTA-GTATT

                                
      98983 TATAAGATATTATTAGTATT
          1 TATAA-ATATTATTAGTATT

                       
      99003 CATATAAATAT
          1 --TATAAATAT

      99014 AATATAATAA


Statistics
Matches: 27,  Mismatches: 1, Indels: 5
        0.82            0.03        0.15

Matches are distributed among these distances:
  20   10  0.37
  21   12  0.44
  22    5  0.19

ACGTcount: A:0.41, C:0.04, G:0.06, T:0.49


Consensus pattern (19 bp):   
TATAAATATTATTAGTATT

Found at i:99128 original size:31 final size:34

Alignment explanation


    Indices: 99047--99143  Score: 96
    Period size: 32  Copynumber: 2.9  Consensus size: 34

      99037 TTATAATTAA

                 *         *            *       
      99047 ATTATAATAT-AATATTTAATATATTAATTTAATTT
          1 ATTATTATATAAATAATT-ATATA-TAAATTAATTT

                      *                       
      99082 ATTATTATATTAATAA-TAT-TATAAATTAATTT
          1 ATTATTATATAAATAATTATATATAAATTAATTT

                                            
      99114 A-TATTAT-TCAAATAATTATATATAAATTAA
          1 ATTATTATAT-AAATAATTATATATAAATTAA

      99144 ATATTTTATT


Statistics
Matches: 54,  Mismatches: 4, Indels: 10
        0.79            0.06        0.15

Matches are distributed among these distances:
  30    1  0.02
  31   11  0.20
  32   14  0.26
  33   12  0.22
  34    2  0.04
  35   10  0.19
  36    4  0.07

ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51


Consensus pattern (34 bp):   
ATTATTATATAAATAATTATATATAAATTAATTT

Found at i:100230 original size:13 final size:13

Alignment explanation


    Indices: 100199--100258  Score: 59
    Period size: 13  Copynumber: 4.5  Consensus size: 13

     100189 TTAAATTTTA

                     *    
     100199 TTTAATTAAATATT
          1 TTTAA-TAATTATT

                         
     100213 TTTAATAATTATT
          1 TTTAATAATTATT

            *             
     100226 ATTAA-AATATATT
          1 TTTAATAAT-TATT

                *       *
     100239 TTTACTAATTATA
          1 TTTAATAATTATT

                   
     100252 TTTAATA
          1 TTTAATA

     100259 CTATAATATA


Statistics
Matches: 38,  Mismatches: 6, Indels: 5
        0.78            0.12        0.10

Matches are distributed among these distances:
  12    3  0.08
  13   27  0.71
  14    8  0.21

ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55


Consensus pattern (13 bp):   
TTTAATAATTATT

Done.