Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25814696
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 122000 characters in sequence are not A, C, G, or T
File 113 of 126
Found at i:22334232 original size:7 final size:7
Alignment explanation
Indices: 22334220--22334255 Score: 63
Period size: 7 Copynumber: 5.1 Consensus size: 7
22334210 GTTTTCACCG
22334220 CTCCCAA
1 CTCCCAA
22334227 CTCCCAA
1 CTCCCAA
*
22334234 CTCCCCA
1 CTCCCAA
22334241 CTCCCAA
1 CTCCCAA
22334248 CTCCCAA
1 CTCCCAA
22334255 C
1 C
22334256 AGATTGCCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.25, C:0.61, G:0.00, T:0.14
Consensus pattern (7 bp):
CTCCCAA
Found at i:22336274 original size:27 final size:26
Alignment explanation
Indices: 22336237--22336302 Score: 68
Period size: 26 Copynumber: 2.6 Consensus size: 26
22336227 TTAATTTAAC
22336237 TATTAAA-ATATTAAAAATT-ATTCAT
1 TATTAAATATATTAAAAATTAATT-AT
*
22336262 TATTAAAATATATT-GAAATTAATTAT
1 TATT-AAATATATTAAAAATTAATTAT
22336288 TATTTAAAT-TATTAA
1 TA-TTAAATATATTAA
22336303 TATTAAACAA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
25 8 0.24
26 16 0.47
27 10 0.29
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (26 bp):
TATTAAATATATTAAAAATTAATTAT
Found at i:22336358 original size:19 final size:18
Alignment explanation
Indices: 22336299--22336374 Score: 59
Period size: 18 Copynumber: 4.2 Consensus size: 18
22336289 ATTTAAATTA
*
22336299 TTAATATT-AAACAATAAT
1 TTAATATTAAAATAAT-AT
* *
22336317 TAAATTTTAATAATAATAT
1 TTAATATTAA-AATAATAT
*
22336336 TTAATATTAAAATATTAT
1 TTAATATTAAAATAATAT
*
22336354 GTTAATA-TAAAA-AATAC
1 -TTAATATTAAAATAATAT
22336371 TTAA
1 TTAA
22336375 AATAAAACTA
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
16 4 0.09
17 3 0.06
18 18 0.38
19 17 0.36
20 5 0.11
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (18 bp):
TTAATATTAAAATAATAT
Found at i:22336431 original size:30 final size:28
Alignment explanation
Indices: 22336397--22336481 Score: 84
Period size: 32 Copynumber: 2.9 Consensus size: 28
22336387 TATTATTCTT
22336397 TATATTTATTCATATAATATTATTTATTAA
1 TATATTTA-T-ATATAATATTATTTATTAA
*
22336427 TATATTATAATATAATATTAGTTATTTATTAA
1 TATATT-T-ATAT-ATAATA-TTATTTATTAA
*
22336459 TATA-ATAT-TATAATATTATTTAT
1 TATATTTATATATAATATTATTTAT
22336482 AAGTAAAATT
Statistics
Matches: 48, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
26 8 0.17
27 5 0.10
28 1 0.02
29 2 0.04
30 9 0.19
31 7 0.15
32 16 0.33
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (28 bp):
TATATTTATATATAATATTATTTATTAA
Found at i:22336457 original size:32 final size:30
Alignment explanation
Indices: 22336416--22336481 Score: 96
Period size: 30 Copynumber: 2.1 Consensus size: 30
22336406 TCATATAATA
22336416 TTATTTATTAATATATTATAATATAATATTAG
1 TTATTTATTAATATA--ATAATATAATATTAG
* *
22336448 TTATTTATTAATATAATATTATAATATTAT
1 TTATTTATTAATATAATAATATAATATTAG
22336478 TTAT
1 TTAT
22336482 AAGTAAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 17 0.53
32 15 0.47
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (30 bp):
TTATTTATTAATATAATAATATAATATTAG
Found at i:22336477 original size:22 final size:23
Alignment explanation
Indices: 22336428--22336478 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
22336418 ATTTATTAAT
*
22336428 ATATTA-TAATATAATATTAGTT
1 ATATTATTAATATAATATTAGTA
22336450 AT-TTATTAATATAATATTA-TA
1 ATATTATTAATATAATATTAGTA
22336471 ATATTATT
1 ATATTATT
22336479 TATAAGTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 6 0.23
22 20 0.77
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (23 bp):
ATATTATTAATATAATATTAGTA
Found at i:22336495 original size:30 final size:30
Alignment explanation
Indices: 22336408--22336495 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
22336398 ATATTTATTC
22336408 ATATAATATTATTTATTAAT-ATATT-ATA
1 ATATAATATTATTTATTAATAATATTAATA
* *
22336436 ATATAATATTAGTTATTTATTAATA-TAATA
1 ATATAATATTATTTA-TTAATAATATTAATA
* *
22336466 TTATAATATTATTTA-TAAGTAAAATTAATA
1 ATATAATATTATTTATTAA-TAATATTAATA
22336496 CTCACAAATT
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
28 16 0.33
29 9 0.18
30 24 0.49
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (30 bp):
ATATAATATTATTTATTAATAATATTAATA
Found at i:22336649 original size:19 final size:19
Alignment explanation
Indices: 22336597--22336649 Score: 52
Period size: 22 Copynumber: 2.6 Consensus size: 19
22336587 AAAAAACCTC
*
22336597 ATTTTTCATTAACCAATAA
1 ATTTTTTATTAACCAATAA
* *
22336616 ATCATTTTTCGTTAACCAATCA
1 AT--TTTTT-ATTAACCAATAA
22336638 ATTTTTTATTAA
1 ATTTTTTATTAA
22336650 ACAAATATCT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
19 6 0.22
20 5 0.19
21 4 0.15
22 12 0.44
ACGTcount: A:0.36, C:0.15, G:0.02, T:0.47
Consensus pattern (19 bp):
ATTTTTTATTAACCAATAA
Found at i:22336946 original size:32 final size:32
Alignment explanation
Indices: 22336909--22336972 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
22336899 CAATAAAATC
22336909 TGTTGATAATAAGCTTCAAAATTATCACAAAA
1 TGTTGATAATAAGCTTCAAAATTATCACAAAA
22336941 TGTTGATAATAAGCTTCAAAATTATCACAAAA
1 TGTTGATAATAAGCTTCAAAATTATCACAAAA
22336973 AAATTTTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.31
Consensus pattern (32 bp):
TGTTGATAATAAGCTTCAAAATTATCACAAAA
Found at i:22340325 original size:12 final size:12
Alignment explanation
Indices: 22340300--22340340 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
22340290 CATTAGGTTA
22340300 TATATATATATT
1 TATATATATATT
* *
22340312 TATTTATTTATT
1 TATATATATATT
22340324 TATATATATATT
1 TATATATATATT
22340336 TATAT
1 TATAT
22340341 GTTTCTTCCC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
TATATATATATT
Found at i:22340339 original size:8 final size:8
Alignment explanation
Indices: 22340298--22340340 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
22340288 AACATTAGGT
*
22340298 TATATATA
1 TATATTTA
22340306 TATATTTA
1 TATATTTA
*
22340314 TTTATTTA
1 TATATTTA
* *
22340322 TTTATATA
1 TATATTTA
22340330 TATATTTA
1 TATATTTA
22340338 TAT
1 TAT
22340341 GTTTCTTCCC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (8 bp):
TATATTTA
Found at i:22341230 original size:10 final size:10
Alignment explanation
Indices: 22341215--22341249 Score: 70
Period size: 10 Copynumber: 3.5 Consensus size: 10
22341205 TACAATTATA
22341215 ATAATAATTT
1 ATAATAATTT
22341225 ATAATAATTT
1 ATAATAATTT
22341235 ATAATAATTT
1 ATAATAATTT
22341245 ATAAT
1 ATAAT
22341250 CAAGAAAGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (10 bp):
ATAATAATTT
Found at i:22341242 original size:13 final size:13
Alignment explanation
Indices: 22341168--22341232 Score: 51
Period size: 13 Copynumber: 4.8 Consensus size: 13
22341158 TTTTTTAATT
*
22341168 TTTATTAATTATAA
1 TTTA-TAATAATAA
**
22341182 -TTATAATAATTT
1 TTTATAATAATAA
*
22341194 TTTAGAATAACTACA
1 TTTATAATAA-TA-A
*
22341209 ATTATAATAATAA
1 TTTATAATAATAA
22341222 TTTATAATAAT
1 TTTATAATAAT
22341233 TTATAATAAT
Statistics
Matches: 39, Mismatches: 9, Indels: 7
0.71 0.16 0.13
Matches are distributed among these distances:
12 6 0.15
13 22 0.56
14 3 0.08
15 8 0.21
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.48
Consensus pattern (13 bp):
TTTATAATAATAA
Found at i:22347446 original size:18 final size:18
Alignment explanation
Indices: 22347410--22347467 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 18
22347400 GGGGGGGACG
*
22347410 ATAAAATTAATTTTAATA
1 ATAAAATTAATATTAATA
*
22347428 ATAAAATTAA-A-T-ATT
1 ATAAAATTAATATTAATA
* *
22347443 ATAAGATTAAAATTAATA
1 ATAAAATTAATATTAATA
22347461 ATAAAAT
1 ATAAAAT
22347468 ATATGTTTAG
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
15 11 0.34
16 2 0.06
17 1 0.03
18 18 0.56
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (18 bp):
ATAAAATTAATATTAATA
Found at i:22347660 original size:15 final size:17
Alignment explanation
Indices: 22347640--22347678 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
22347630 TATTTGACAT
*
22347640 ATTTATTT-ATTA-ATA
1 ATTTATTTCATTATAAA
22347655 ATTTATTTCATTATAAA
1 ATTTATTTCATTATAAA
22347672 ATTTATT
1 ATTTATT
22347679 ATTTTTATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.38
16 4 0.19
17 9 0.43
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTATTTCATTATAAA
Found at i:22347692 original size:17 final size:18
Alignment explanation
Indices: 22347672--22347713 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
22347662 TCATTATAAA
22347672 ATTTATT-ATTTTTA-TGT
1 ATTTATTAATTTTTAGT-T
22347689 ATTTATTAATTTTTAGTT
1 ATTTATTAATTTTTAGTT
22347707 ATTTATT
1 ATTTATT
22347714 TATTCATTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 7 0.30
18 15 0.65
19 1 0.04
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (18 bp):
ATTTATTAATTTTTAGTT
Found at i:22347770 original size:25 final size:26
Alignment explanation
Indices: 22347719--22347778 Score: 79
Period size: 25 Copynumber: 2.3 Consensus size: 26
22347709 TTATTTATTC
22347719 ATTACTTTATTATATAATTATTAAAAA
1 ATTA-TTTATTATATAATTATTAAAAA
*
22347746 ATTATTTATT-TAT-ATTAATTTAAAA
1 ATTATTTATTATATAATT-ATTAAAAA
22347771 ATTATTTA
1 ATTATTTA
22347779 AGAATTATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 3 0.10
25 18 0.58
26 6 0.19
27 4 0.13
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (26 bp):
ATTATTTATTATATAATTATTAAAAA
Found at i:22348517 original size:20 final size:21
Alignment explanation
Indices: 22348492--22348534 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
22348482 CACCTCTCCC
* *
22348492 TTATTTCATTCCTTTTTT-TT
1 TTATTTAATTCATTTTTTGTT
22348512 TTATTTAATTCATTTTTTGTT
1 TTATTTAATTCATTTTTTGTT
22348533 TT
1 TT
22348535 TTATCATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.14, C:0.09, G:0.02, T:0.74
Consensus pattern (21 bp):
TTATTTAATTCATTTTTTGTT
Found at i:22349960 original size:29 final size:30
Alignment explanation
Indices: 22349912--22349987 Score: 84
Period size: 29 Copynumber: 2.5 Consensus size: 30
22349902 ATTATTAATG
* *
22349912 ATATTTAAATTATAGTAAAACA-TTTAATGTA
1 ATATTTAAATTATA--AAAAAATTTTAATATA
*
22349943 ATATTTGAATT-TAAAAAAATTTTAATATA
1 ATATTTAAATTATAAAAAAATTTTAATATA
*
22349972 GTATTTAAATTATAAA
1 ATATTTAAATTATAAA
22349988 TCTATAGATA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
28 5 0.13
29 17 0.45
30 6 0.16
31 10 0.26
ACGTcount: A:0.50, C:0.01, G:0.05, T:0.43
Consensus pattern (30 bp):
ATATTTAAATTATAAAAAAATTTTAATATA
Found at i:22355677 original size:2 final size:2
Alignment explanation
Indices: 22355670--22355727 Score: 57
Period size: 2 Copynumber: 29.0 Consensus size: 2
22355660 TTTATTAAAT
* * *
22355670 TA TA TA TA TA TA TA TA TA TA TA TT TGA T- TGA TT TC T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA T-A TA T-A TA TA TA TA TA TA
22355712 TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA
22355728 AATGAAACGC
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
1 2 0.04
2 44 0.92
3 2 0.04
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.53
Consensus pattern (2 bp):
TA
Found at i:22356791 original size:20 final size:21
Alignment explanation
Indices: 22356762--22356828 Score: 63
Period size: 20 Copynumber: 3.4 Consensus size: 21
22356752 AATATTTATT
*
22356762 TTTTAGTTAT-ATTTA-ATATA
1 TTTTATTTATAATTTATATA-A
*
22356782 TTTTATTTATAATTTTTATAA
1 TTTTATTTATAATTTATATAA
*
22356803 TTTTATTT-TAATTT-TTTAA
1 TTTTATTTATAATTTATATAA
22356822 -TTTATTT
1 TTTTATTT
22356829 TTAAAGAAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
18 7 0.17
19 4 0.10
20 15 0.36
21 13 0.31
22 3 0.07
ACGTcount: A:0.30, C:0.00, G:0.01, T:0.69
Consensus pattern (21 bp):
TTTTATTTATAATTTATATAA
Found at i:22356818 original size:21 final size:21
Alignment explanation
Indices: 22356781--22356828 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
22356771 TATTTAATAT
22356781 ATTTTATTTATAATTTTTATA
1 ATTTTATTTATAATTTTTATA
22356802 ATTTTATTT-TAATTTTT-TA
1 ATTTTATTTATAATTTTTATA
22356821 A-TTTATTT
1 ATTTTATTT
22356829 TTAAAGAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.26
19 3 0.11
20 8 0.30
21 9 0.33
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (21 bp):
ATTTTATTTATAATTTTTATA
Found at i:22358929 original size:21 final size:21
Alignment explanation
Indices: 22358867--22358936 Score: 58
Period size: 21 Copynumber: 3.4 Consensus size: 21
22358857 TTACTTTTGT
*
22358867 AATAGAAAAGTGAA-AAGCAAAA
1 AATA-AAAAATGAATAA-CAAAA
**
22358889 AAT-AAAAA--AATAACTGAA
1 AATAAAAAATGAATAACAAAA
22358907 AATAAAAAATGAATAACAAAA
1 AATAAAAAATGAATAACAAAA
*
22358928 AAAAAAAAA
1 AATAAAAAA
22358937 AAAACAAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
18 8 0.21
19 7 0.18
20 4 0.11
21 16 0.42
22 3 0.08
ACGTcount: A:0.76, C:0.04, G:0.09, T:0.11
Consensus pattern (21 bp):
AATAAAAAATGAATAACAAAA
Found at i:22358942 original size:18 final size:18
Alignment explanation
Indices: 22358879--22358946 Score: 55
Period size: 18 Copynumber: 3.6 Consensus size: 18
22358869 TAGAAAAGTG
* *
22358879 AAAAGCAAAAAATAAAAA
1 AAAAACAAAAAAAAAAAA
* **
22358897 AATAACTGAAAATAAAAAATG
1 AAAAAC--AAAA-AAAAAAAA
*
22358918 AATAACAAAAAAAAAAAA
1 AAAAACAAAAAAAAAAAA
22358936 AAAAACAAAAA
1 AAAAACAAAAA
22358947 CACCAACCAA
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
18 20 0.51
19 4 0.10
20 4 0.10
21 11 0.28
ACGTcount: A:0.81, C:0.06, G:0.04, T:0.09
Consensus pattern (18 bp):
AAAAACAAAAAAAAAAAA
Found at i:22360682 original size:29 final size:30
Alignment explanation
Indices: 22360634--22360693 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 30
22360624 AATTAATAAA
*
22360634 TTTATAATTCAAATACTATATTAAATTTTT
1 TTTATAATTCAAATACTATATTAAATATTT
* *
22360664 TTTA-AATTCAAGTATTATATTAAATATTT
1 TTTATAATTCAAATACTATATTAAATATTT
22360693 T
1 T
22360694 ATTTTTATTC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 23 0.85
30 4 0.15
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.53
Consensus pattern (30 bp):
TTTATAATTCAAATACTATATTAAATATTT
Found at i:22371729 original size:64 final size:64
Alignment explanation
Indices: 22371658--22371781 Score: 187
Period size: 64 Copynumber: 1.9 Consensus size: 64
22371648 ATAGAAACGC
* * * *
22371658 CTTAAATAATTTATTTATAAAAAAAT-AAAATGATTATTTAAGGTATTTTTATACAAAAAAAAAT
1 CTTAAATAATCTATTTATAAAAAAATAAAAAT-ATTAGTTAAGGCATTTCTATACAAAAAAAAAT
*
22371722 CTTAAATAATCTATTTATAAAAATATAAAAATATTAGTTAAGGCATTTCTATACAAAAAA
1 CTTAAATAATCTATTTATAAAAAAATAAAAATATTAGTTAAGGCATTTCTATACAAAAAA
22371782 TGCCTTAAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
64 49 0.91
65 5 0.09
ACGTcount: A:0.52, C:0.06, G:0.05, T:0.37
Consensus pattern (64 bp):
CTTAAATAATCTATTTATAAAAAAATAAAAATATTAGTTAAGGCATTTCTATACAAAAAAAAAT
Found at i:22371851 original size:112 final size:112
Alignment explanation
Indices: 22371682--22371901 Score: 322
Period size: 112 Copynumber: 2.0 Consensus size: 112
22371672 TTATAAAAAA
22371682 ATAAAATGATTATTTAAGGTATTTTTATACAAAAAAAAATCTTAAATAATCTATTTATAAAAATA
1 ATAAAATGATTATTTAAGGTATTTTTATACAAAAAAAAATCTTAAATAATCTATTTATAAAAATA
* *
22371747 TAAAAAT-ATTAGTTAAGGCATTTCTATACAAAAAATGCCTTAAAAATT
66 T-AAAATGATTAGTTAAAGCATTTCTATAC-AAAAATACCTTAAAAATT
* **
22371795 ATAAAA-GTATTATTTAAGTTATTTTTTATAC-AAAAACGAT-TTAAATAATCTATTTATAAAAA
1 ATAAAATG-ATTATTTAAGGTA-TTTTTATACAAAAAAAAATCTTAAATAATCTATTTATAAAAA
*
22371857 TATAAAATGATTATTTAAAGCATTTCTATACAAAAATACCTTAAA
64 TATAAAATGATTAGTTAAAGCATTTCTATACAAAAATACCTTAAA
22371902 TAATCATTTT
Statistics
Matches: 98, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
111 18 0.18
112 46 0.47
113 25 0.26
114 9 0.09
ACGTcount: A:0.50, C:0.07, G:0.05, T:0.38
Consensus pattern (112 bp):
ATAAAATGATTATTTAAGGTATTTTTATACAAAAAAAAATCTTAAATAATCTATTTATAAAAATA
TAAAATGATTAGTTAAAGCATTTCTATACAAAAATACCTTAAAAATT
Found at i:22372137 original size:71 final size:71
Alignment explanation
Indices: 22371999--22372137 Score: 156
Period size: 71 Copynumber: 2.0 Consensus size: 71
22371989 AAATAATTTA
* * * * * * * * *
22371999 TTTATAAAAGTATAAAATGATTATTTAAAGTATTTCTGTACAAAAAACTCTTTAAATAATTTTTT
1 TTTATAAAAATATAAAAAGATTATTTAAAGCATTTATGTACAAAAAACCCCTAAAATAATCTATT
22372064 TATCCT
66 TATCCT
*
22372070 TTTATAAAAATATAAAAAGATTATTT-AAGACATTATATGTAC-AATAACCCCTAAAATAATCTA
1 TTTATAAAAATATAAAAAGATTATTTAAAG-CATT-TATGTACAAAAAACCCCTAAAATAATCTA
22372133 TTTAT
64 TTTAT
22372138 AAAAACAAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
70 3 0.05
71 47 0.84
72 6 0.11
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (71 bp):
TTTATAAAAATATAAAAAGATTATTTAAAGCATTTATGTACAAAAAACCCCTAAAATAATCTATT
TATCCT
Found at i:22373111 original size:15 final size:14
Alignment explanation
Indices: 22373074--22373153 Score: 54
Period size: 15 Copynumber: 5.4 Consensus size: 14
22373064 ATCCCTATTA
22373074 AATTACATATTAAATT
1 AATTACATA--AAATT
*
22373090 AACTACATAAAACTT
1 AATTACATAAAA-TT
22373105 AATTACATATTAAATT
1 AATTACATA--AAATT
* * *
22373121 -ATTATATTAAATC
1 AATTACATAAAATT
*
22373134 AACTACATAAAACTT
1 AATTACATAAAA-TT
22373149 AATTA
1 AATTA
22373154 TATATTAAAT
Statistics
Matches: 49, Mismatches: 10, Indels: 11
0.70 0.14 0.16
Matches are distributed among these distances:
13 4 0.08
14 11 0.22
15 21 0.43
16 10 0.20
17 3 0.06
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (14 bp):
AATTACATAAAATT
Found at i:22376724 original size:24 final size:24
Alignment explanation
Indices: 22376680--22376725 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
22376670 CCTAAAATAA
* *
22376680 AAAACTTAAAACTCTCTAAACCCT
1 AAAACTTAAAACTCCCAAAACCCT
22376704 AAAACTTCAAAA-TCCCAAAACC
1 AAAACTT-AAAACTCCCAAAACC
22376726 AAAACCCTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 15 0.79
25 4 0.21
ACGTcount: A:0.50, C:0.30, G:0.00, T:0.20
Consensus pattern (24 bp):
AAAACTTAAAACTCCCAAAACCCT
Found at i:22388412 original size:93 final size:93
Alignment explanation
Indices: 22388253--22388435 Score: 312
Period size: 93 Copynumber: 2.0 Consensus size: 93
22388243 ACTAGCTCCT
* * * *
22388253 GGAGTACGGTTACGTGTAAGGAAGGTTATAGTACCTTCATATTACCCACCCAAAAGATGGTATCG
1 GGAGTACGATTACGTGTAAAGAAGGTTATAGCACCTTCACATTACCCACCCAAAAGATGGTATCG
*
22388318 AAAATTATTCCTAAATTACTCCAATTCA
66 AAAATTATCCCTAAATTACTCCAATTCA
*
22388346 GGAGTACGATTACGTGTAAAGAAGGTTATAGCACCTTCACATTGCCCACCCAAAAGATGGTATCG
1 GGAGTACGATTACGTGTAAAGAAGGTTATAGCACCTTCACATTACCCACCCAAAAGATGGTATCG
22388411 AAAATTATCCCTAAATTACTCCAAT
66 AAAATTATCCCTAAATTACTCCAAT
22388436 ATGTTTGTAA
Statistics
Matches: 84, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 84 1.00
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (93 bp):
GGAGTACGATTACGTGTAAAGAAGGTTATAGCACCTTCACATTACCCACCCAAAAGATGGTATCG
AAAATTATCCCTAAATTACTCCAATTCA
Found at i:22388947 original size:19 final size:19
Alignment explanation
Indices: 22388923--22388959 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
22388913 TAAGGCTTTA
*
22388923 TTGAAAATTGTTTTTTATG
1 TTGAAAATTATTTTTTATG
*
22388942 TTGAAATTTATTTTTTAT
1 TTGAAAATTATTTTTTAT
22388960 AAAAAATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.11, T:0.62
Consensus pattern (19 bp):
TTGAAAATTATTTTTTATG
Found at i:22389218 original size:4 final size:4
Alignment explanation
Indices: 22389211--22389267 Score: 62
Period size: 4 Copynumber: 14.2 Consensus size: 4
22389201 AAAAAATTAC
* * * *
22389211 AAAT AAAT AAAT ATAT AAAT -AAT CAAAT AAAC AAAC AAAC AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAAT AAAT AAAT AAAT AAAT
22389259 AAAT AAAT A
1 AAAT AAAT A
22389268 GACAATTGTG
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
3 3 0.06
4 41 0.87
5 3 0.06
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:22393891 original size:33 final size:33
Alignment explanation
Indices: 22393853--22393972 Score: 134
Period size: 34 Copynumber: 3.6 Consensus size: 33
22393843 CACTAAATTA
*
22393853 AAAAATACATTTTTAAAAAGATTATAATTATTC
1 AAAAATACATTTTCAAAAAGATTATAATTATTC
* * *
22393886 AAAAATATATTTTTAAAAAATATTATAATTA-TC
1 AAAAATACA-TTTTCAAAAAGATTATAATTATTC
** *
22393919 TAAAAATGTATTTTCAAAAAGTATTATAATTATTT
1 -AAAAATACATTTTCAAAAAG-ATTATAATTATTC
*
22393954 AAAAATTCATTTTCAAAAA
1 AAAAATACATTTTCAAAAA
22393973 TAAATTTTTA
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
33 19 0.26
34 54 0.73
35 1 0.01
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.41
Consensus pattern (33 bp):
AAAAATACATTTTCAAAAAGATTATAATTATTC
Found at i:22393908 original size:15 final size:15
Alignment explanation
Indices: 22393850--22393908 Score: 64
Period size: 15 Copynumber: 3.7 Consensus size: 15
22393840 CTTCACTAAA
*
22393850 TTAAAAAATACATTT
1 TTAAAAAATATATTT
*
22393865 TTAAAAAGATTATAATTA
1 TTAAAAA-A-TAT-ATTT
*
22393883 TTCAAAAATATATTT
1 TTAAAAAATATATTT
22393898 TTAAAAAATAT
1 TTAAAAAATAT
22393909 TATAATTATC
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
15 20 0.56
16 4 0.11
17 3 0.08
18 9 0.25
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (15 bp):
TTAAAAAATATATTT
Found at i:22394553 original size:34 final size:34
Alignment explanation
Indices: 22394515--22394593 Score: 97
Period size: 34 Copynumber: 2.3 Consensus size: 34
22394505 AAGATTTCAT
* * *
22394515 AAATGAATGTTTGAAAA-TCATTAAAATTTTTTTA
1 AAATGAATATTTAAAAATTC-TTAAAATTTTTTAA
*
22394549 AAATGTATATTTAAAAATTCTTAAAATTTTTTAA
1 AAATGAATATTTAAAAATTCTTAAAATTTTTTAA
*
22394583 AAATTAATATT
1 AAATGAATATT
22394594 CACAAGCTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
34 36 0.95
35 2 0.05
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.46
Consensus pattern (34 bp):
AAATGAATATTTAAAAATTCTTAAAATTTTTTAA
Found at i:22401028 original size:18 final size:18
Alignment explanation
Indices: 22401005--22401040 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
22400995 ACTTATTTGA
* *
22401005 CATAAAGTAAATGTGATT
1 CATAAAATAAATATGATT
22401023 CATAAAATAAATATGATT
1 CATAAAATAAATATGATT
22401041 TAATTTAGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.50, C:0.06, G:0.11, T:0.33
Consensus pattern (18 bp):
CATAAAATAAATATGATT
Found at i:22406291 original size:5 final size:5
Alignment explanation
Indices: 22406281--22406319 Score: 69
Period size: 5 Copynumber: 7.6 Consensus size: 5
22406271 TTTCTTGGTT
22406281 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTGC TTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTT-C TTT
22406320 GGTGTTGCGC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 29 0.88
6 4 0.12
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (5 bp):
TTTTC
Found at i:22409227 original size:323 final size:323
Alignment explanation
Indices: 22408634--22409255 Score: 756
Period size: 323 Copynumber: 1.9 Consensus size: 323
22408624 CTTTTTTAAA
* *
22408634 AGTATTTTGTTTTGCATGTTATTTGAATGAAATTATGATTTTGTTTTTTATAGATTTTTTGTTTT
1 AGTATTTTGTTTTGAATGTTATTTGAATGAAATTATGATTTTG--TTTTATAGA---TTTGTATT
* * * * *
22408699 TTTTTTTGCCTTAGGGTTTTTAAAGCTTGTTAGATATTAAATTTTCGATTTAGTATGAATTGTAT
61 TTTTTTCGCCTCAGGGTTTTTAAAGCTTGTTAAATATTAAATTTTCAAATTAGTATGAATTGTAT
* * * * * **
22408764 TGTGTATTGTTTTCTTTTATTTATTGTGTATTTTGGTTATATTTGATTTTGGTCTATCAAGTGAT
126 TATATATTGTTTTCTTTTATTTATTATGTATTTTAGTTATATTTGATTCTACTCTATCAAGTGAT
* * * *
22408829 TAATTGACGTACTATATGAGTTAATGATATTAGTTTGAATAAAACTATTTACGATATTTGAAAGG
191 TAATTAAAGTACCATATGAGTTAATGATATTAGTTTGAACAAAACTATTTACGATATTTGAAAGG
* *
22408894 TTGATTGTTTGTCACAGATAGAGTTGATGTTTAATTGTGGTATAATTGTATAATTGTGTTTTTGT
256 TTAATTGTTTGTCAAAGATAGAGTTGATGTTTAATTGTGGTATAATTGTATAATTGTGTTTTTGT
22408959 AGG
321 AGG
* * *
22408962 AGTATTTTGTTTTGAATGTTATTTGAATGAAGTTATTATTTTG-TTT-TCGA-TTG-ATTTTTTT
1 AGTATTTTGTTTTGAATGTTATTTGAATGAAATTATGATTTTGTTTTATAGATTTGTATTTTTTT
* * *
22409023 TCGTCTCAGGGTTTCTTGAAGCTAT-TTAAATATTAAGTTTTCAAATTAGTATGAATTGTATTAT
66 TCGCCTCAGGGTTT-TTAAAGCT-TGTTAAATATTAAATTTTCAAATTAGTATGAATTGTATTAT
*
22409087 ATATTGTTTTTATTTATTTATTTATTATGTATTTTAG-T-TATTTGACTTCTACT-TATCAAGTG
129 ATATTG--TTT-TCT-TTTATTTATTATGTATTTTAGTTATATTTGA-TTCTACTCTATCAAGTG
* * * ** *
22409149 GTTGATCTAAAGTACCATATGAGTTGATGATATTAGTTTGAACAAAACTATTTGTGGTATTTGAA
189 ATTAAT-TAAAGTACCATATGAGTTAATGATATTAGTTTGAACAAAACTATTTACGATATTTGAA
* *
22409214 GGGTTAATTGTTTGTCAAAGATGGAGTTGATGTTTAATTGTG
253 AGGTTAATTGTTTGTCAAAGATAGAGTTGATGTTTAATTGTG
22409256 AGATAATAGT
Statistics
Matches: 251, Mismatches: 35, Indels: 21
0.82 0.11 0.07
Matches are distributed among these distances:
319 18 0.07
320 49 0.20
321 1 0.00
322 23 0.09
323 95 0.38
324 22 0.09
325 3 0.01
328 40 0.16
ACGTcount: A:0.26, C:0.05, G:0.18, T:0.51
Consensus pattern (323 bp):
AGTATTTTGTTTTGAATGTTATTTGAATGAAATTATGATTTTGTTTTATAGATTTGTATTTTTTT
TCGCCTCAGGGTTTTTAAAGCTTGTTAAATATTAAATTTTCAAATTAGTATGAATTGTATTATAT
ATTGTTTTCTTTTATTTATTATGTATTTTAGTTATATTTGATTCTACTCTATCAAGTGATTAATT
AAAGTACCATATGAGTTAATGATATTAGTTTGAACAAAACTATTTACGATATTTGAAAGGTTAAT
TGTTTGTCAAAGATAGAGTTGATGTTTAATTGTGGTATAATTGTATAATTGTGTTTTTGTAGG
Found at i:22418446 original size:51 final size:51
Alignment explanation
Indices: 22418360--22418456 Score: 133
Period size: 51 Copynumber: 1.9 Consensus size: 51
22418350 TTTAGAAATA
** * * *
22418360 GATTTTCAAAAATTCTTAAAGGTTTTTATATATTTATTTTTGAAAACTTTG
1 GATTTTCAAAAATTCTTAAAGACTTATAGACATTTATTTTTGAAAACTTTG
22418411 GATTTTCAAAAAATT-TTAAAGACTTATAGACATTTATTTTTGAAAA
1 GATTTTC-AAAAATTCTTAAAGACTTATAGACATTTATTTTTGAAAA
22418457 TTTTTAAAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
51 33 0.82
52 7 0.17
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.46
Consensus pattern (51 bp):
GATTTTCAAAAATTCTTAAAGACTTATAGACATTTATTTTTGAAAACTTTG
Found at i:22419695 original size:21 final size:21
Alignment explanation
Indices: 22419666--22419724 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
22419656 GATAATTTAA
*
22419666 GATATAATTTTGATAATCATT
1 GATAAAATTTTGATAATCATT
* * *
22419687 GGTACAATTTTGATAATCTTT
1 GATAAAATTTTGATAATCATT
*
22419708 GATAAAATTTTGGTAAT
1 GATAAAATTTTGATAAT
22419725 TCCTTGATCT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.36, C:0.05, G:0.14, T:0.46
Consensus pattern (21 bp):
GATAAAATTTTGATAATCATT
Found at i:22420059 original size:22 final size:22
Alignment explanation
Indices: 22420034--22420075 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
22420024 ATAATTGATA
*
22420034 ATTAAGTTATTATTGTTTTAGT
1 ATTAAGTTATTATTGATTTAGT
**
22420056 ATTATTTTATTATTGATTTA
1 ATTAAGTTATTATTGATTTA
22420076 CTACTAAGCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.62
Consensus pattern (22 bp):
ATTAAGTTATTATTGATTTAGT
Found at i:22420143 original size:22 final size:22
Alignment explanation
Indices: 22420118--22420166 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
22420108 AGTATTGAAG
** **
22420118 TACTATTACTTTATGAATGATT
1 TACTATTAAGTTATGAACAATT
22420140 TACTATTAAGTTATGAACAATT
1 TACTATTAAGTTATGAACAATT
22420162 TACTA
1 TACTA
22420167 ATAAATTTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.37, C:0.10, G:0.08, T:0.45
Consensus pattern (22 bp):
TACTATTAAGTTATGAACAATT
Found at i:22420183 original size:22 final size:22
Alignment explanation
Indices: 22420128--22420213 Score: 77
Period size: 22 Copynumber: 4.0 Consensus size: 22
22420118 TACTATTACT
* * * *
22420128 TTATGAATGATTTACTATTAAG
1 TTATTAATAATTTACTAATAAA
* *
22420150 TTATGAACAATTTACTAATAAA
1 TTATTAATAATTTACTAATAAA
* *
22420172 TTTTTAATAATTTACTACTAAA
1 TTATTAATAATTTACTAATAAA
*
22420194 TTATTGAT-ATTTACT-ATAAA
1 TTATTAATAATTTACTAATAAA
22420214 GTTACAATTG
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 4 0.08
21 7 0.13
22 42 0.79
ACGTcount: A:0.42, C:0.07, G:0.06, T:0.45
Consensus pattern (22 bp):
TTATTAATAATTTACTAATAAA
Found at i:22420388 original size:22 final size:22
Alignment explanation
Indices: 22420274--22420762 Score: 133
Period size: 22 Copynumber: 22.3 Consensus size: 22
22420264 ACTGATTAAC
* *
22420274 TAATTTACTATAAAATTATCAC
1 TAATTTACTATTAAATTATCAT
* *
22420296 TAATTTACAATTAAATTAGCAT
1 TAATTTACTATTAAATTATCAT
* ** * *
22420318 TGATTTAC-AACAATTTATTAT
1 TAATTTACTATTAAATTATCAT
* * * * *
22420339 TGATTTACTACTAAGTTATTAA
1 TAATTTACTATTAAATTATCAT
* **
22420361 TGATTTACTATTATGTTATCAT
1 TAATTTACTATTAAATTATCAT
** * *
22420383 TAATTTACTATTTAGCTTTTTAT
1 TAATTTACTA-TTAAATTATCAT
* * * *
22420406 T-ATTTATTATAAAATCATTA-
1 TAATTTACTATTAAATTATCAT
* *
22420426 TAGATTTATTATTAAATTAAC-T
1 TA-ATTTACTATTAAATTATCAT
* * * ** * *
22420448 ATGATTCATTACCAAATTATGAC
1 -TAATTTACTATTAAATTATCAT
22420471 TAATTTA-TATTAAATTATCCA-
1 TAATTTACTATTAAATTAT-CAT
* * *
22420492 TGATTTATTATTAAGTTA-CA-
1 TAATTTACTATTAAATTATCAT
* * * *
22420512 TGATTAACTATTGATTTATCGA-
1 TAATTTACTATTAAATTATC-AT
* *
22420534 TGATTTACTACTTCTAAGTTAT-AT
1 TAATTTACTA--T-TAAATTATCAT
* * * *
22420558 TAATTTATTTTTAAGTTTTCAAT
1 TAATTTACTATTAAATTATC-AT
* * *
22420581 T-ATTAATTAATAAATTATCAT
1 TAATTTACTATTAAATTATCAT
* * *
22420602 TGATTTACTACTAAGTTATTCA-
1 TAATTTACTATTAAATTA-TCAT
** ** *
22420624 TAATTTACTACGGAGTTTATCAAC
1 TAATTTACTA-TTAAATTATC-AT
*
22420648 TAA-TTACTATTAAATTGA-AAT
1 TAATTTACTATTAAATT-ATCAT
* * *
22420669 TGATTTACTATTAAGTTATCAC
1 TAATTTACTATTAAATTATCAT
22420691 TAATTTACTATTAAATTATCAT
1 TAATTTACTATTAAATTATCAT
* * *
22420713 TAATTAATTATTAAATTATCAA
1 TAATTTACTATTAAATTATCAT
* * * *
22420735 TGATTAACTATTGAGTTATCAT
1 TAATTTACTATTAAATTATCAT
*
22420757 TTATTT
1 TAATTT
22420763 TTTAGTAACC
Statistics
Matches: 347, Mismatches: 95, Indels: 50
0.71 0.19 0.10
Matches are distributed among these distances:
20 17 0.05
21 52 0.15
22 232 0.67
23 29 0.08
24 11 0.03
25 6 0.02
ACGTcount: A:0.37, C:0.09, G:0.06, T:0.48
Consensus pattern (22 bp):
TAATTTACTATTAAATTATCAT
Found at i:22421119 original size:22 final size:22
Alignment explanation
Indices: 22421065--22421106 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
22421055 AGTAATATAC
*
22421065 TACTAAGTTATAAATGATTTAA
1 TACTAAATTATAAATGATTTAA
* *
22421087 TATTAAATTATCAATGATTT
1 TACTAAATTATAAATGATTT
22421107 TTTACTAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.45
Consensus pattern (22 bp):
TACTAAATTATAAATGATTTAA
Found at i:22421216 original size:11 final size:10
Alignment explanation
Indices: 22421202--22421262 Score: 50
Period size: 11 Copynumber: 5.6 Consensus size: 10
22421192 TACGATTAAG
22421202 TTATTGATAAT
1 TTATT-ATAAT
22421213 TTATTATAAAT
1 TTATTAT-AAT
* *
22421224 TTATAACAGAT
1 TTATTATA-AT
22421235 TTATTACTAAT
1 TTATTA-TAAT
*
22421246 TTATTGATGAT
1 TTATT-ATAAT
22421257 TTATTA
1 TTATTA
22421263 AAAAGTTATC
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
10 4 0.10
11 35 0.85
12 2 0.05
ACGTcount: A:0.38, C:0.03, G:0.07, T:0.52
Consensus pattern (10 bp):
TTATTATAAT
Found at i:22421227 original size:22 final size:22
Alignment explanation
Indices: 22421202--22421271 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
22421192 TACGATTAAG
22421202 TTATTGATAATTTATTATAAAT
1 TTATTGATAATTTATTATAAAT
* *
22421224 TTA-TAACAGATTTATTACT-AAT
1 TTATTGATA-ATTTATTA-TAAAT
* * *
22421246 TTATTGATGATTTATTAAAAAG
1 TTATTGATAATTTATTATAAAT
22421268 TTAT
1 TTAT
22421272 CAAAGATTAA
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
21 3 0.08
22 31 0.84
23 3 0.08
ACGTcount: A:0.40, C:0.03, G:0.07, T:0.50
Consensus pattern (22 bp):
TTATTGATAATTTATTATAAAT
Found at i:22421310 original size:22 final size:22
Alignment explanation
Indices: 22421285--22421676 Score: 134
Period size: 22 Copynumber: 18.2 Consensus size: 22
22421275 AGATTAACTA
*
22421285 ATTTACTACTAAATTATCATTG
1 ATTTACTATTAAATTATCATTG
*
22421307 ATTTA-TAATTAAGTTAT--TTG
1 ATTTACT-ATTAAATTATCATTG
* * * *
22421327 TAATTTATTATT-AGTTATTAGTG
1 --ATTTACTATTAAATTATCATTG
* * *
22421350 ATTTATTAGTAACTTATCA---
1 ATTTACTATTAAATTATCATTG
* * *
22421369 ATTTACTACTAAATTATAAATG
1 ATTTACTATTAAATTATCATTG
* * *
22421391 ATTTACTATTATATTTTTATAT-
1 ATTTACTATTAAATTATCAT-TG
* * ** * *
22421413 ATTTATTACTATGTTGTTATTG
1 ATTTACTATTAAATTATCATTG
* * *
22421435 ATTTACTACTAAATTTTTTATT-
1 ATTTACTATTAAA-TTATCATTG
** *
22421457 ATTTACTAAAAAATTATCACTG
1 ATTTACTATTAAATTATCATTG
* *
22421479 A-TTATTGTTAAATTATC-TATG
1 ATTTACTATTAAATTATCAT-TG
* * * * *
22421500 ATTCATTATCATATTATTATTG
1 ATTTACTATTAAATTATCATTG
*
22421522 ATTTA-TATTAAATTATGCA-TA
1 ATTTACTATTAAATTAT-CATTG
* * *
22421543 ATTTACTGTTAAATTATCACTA
1 ATTTACTATTAAATTATCATTG
* *
22421565 ATTAACTATTAAATTATCGA-TA
1 ATTTACTATTAAATTATC-ATTG
* * * *
22421587 AATTATTATTAAATTAT-ACTA
1 ATTTACTATTAAATTATCATTG
* *
22421608 ATTTACTTTTAAACTT-TCAATG
1 ATTTACTATTAAA-TTATCATTG
* *
22421630 ATTAACTATTAAATAATCATT-
1 ATTTACTATTAAATTATCATTG
* *
22421651 ATTTACTACTAAATTATCATTT
1 ATTTACTATTAAATTATCATTG
22421673 ATTT
1 ATTT
22421677 GCTAATAAGT
Statistics
Matches: 283, Mismatches: 61, Indels: 52
0.71 0.15 0.13
Matches are distributed among these distances:
19 15 0.05
20 4 0.01
21 86 0.30
22 165 0.58
23 13 0.05
ACGTcount: A:0.37, C:0.08, G:0.05, T:0.50
Consensus pattern (22 bp):
ATTTACTATTAAATTATCATTG
Found at i:22421344 original size:21 final size:22
Alignment explanation
Indices: 22421307--22421366 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 22
22421297 ATTATCATTG
* *
22421307 ATTTATAATTAAGTTATTTGTA
1 ATTTATTATTAAGTTATTAGTA
*
22421329 ATTTATTATT-AGTTATTAGTG
1 ATTTATTATTAAGTTATTAGTA
* *
22421350 ATTTATTAGTAACTTAT
1 ATTTATTATTAAGTTAT
22421367 CAATTTACTA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 18 0.56
22 14 0.44
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (22 bp):
ATTTATTATTAAGTTATTAGTA
Found at i:22421417 original size:84 final size:85
Alignment explanation
Indices: 22421284--22421439 Score: 203
Period size: 84 Copynumber: 1.8 Consensus size: 85
22421274 AAGATTAACT
* * * *
22421284 AATTTACTACTAAATTATCATTGATTTATAATTAAGTTATTTGTAATTTATTATTA-GTTATTAG
1 AATTTACTACTAAATTATAAATGATTTATAATTAAGTTATTTATAATTTATTACTATGTTATTAG
22421348 TGATTTATTAGTAACTTATC
66 TGATTTATTAGTAACTTATC
*
22421368 AATTTACTACTAAATTATAAATGATTTACT-ATTATA-TT-TTTATATATTTATTACTATGTTGT
1 AATTTACTACTAAATTATAAATGATTTA-TAATTA-AGTTATTTATA-ATTTATTACTATGTTAT
*
22421430 TATTGATTTA
63 TAGTGATTTA
22421440 CTACTAAATT
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
83 5 0.08
84 42 0.68
85 15 0.24
ACGTcount: A:0.35, C:0.06, G:0.07, T:0.53
Consensus pattern (85 bp):
AATTTACTACTAAATTATAAATGATTTATAATTAAGTTATTTATAATTTATTACTATGTTATTAG
TGATTTATTAGTAACTTATC
Found at i:22421581 original size:65 final size:64
Alignment explanation
Indices: 22421512--22421667 Score: 172
Period size: 65 Copynumber: 2.4 Consensus size: 64
22421502 TCATTATCAT
* * *
22421512 ATTATTATTGATTTA-TATTAAATTATGCATAATTTACTGTTAAA-TTATCACTAATTAACTATT
1 ATTATCATT-ATTTACTATTAAATTATAC-TAATTTACTGTTAAACTT-TCAATAATTAACTATT
22421575 AA
63 AA
* * * * *
22421577 ATTATCGATAAATTATTATTAAATTATACTAATTTACTTTTAAACTTTCAATGATTAACTATTAA
1 ATTATC-ATTATTTACTATTAAATTATACTAATTTACTGTTAAACTTTCAATAATTAACTATTAA
* *
22421642 ATAATCATTATTTACTACTAAATTAT
1 ATTATCATTATTTACTATTAAATTAT
22421668 CATTTATTTG
Statistics
Matches: 76, Mismatches: 12, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
64 16 0.21
65 44 0.58
66 16 0.21
ACGTcount: A:0.41, C:0.09, G:0.03, T:0.47
Consensus pattern (64 bp):
ATTATCATTATTTACTATTAAATTATACTAATTTACTGTTAAACTTTCAATAATTAACTATTAA
Found at i:22421599 original size:11 final size:12
Alignment explanation
Indices: 22421551--22421603 Score: 51
Period size: 11 Copynumber: 4.8 Consensus size: 12
22421541 TAATTTACTG
22421551 TTAAATTATC-A
1 TTAAATTATCTA
* *
22421562 CT-AATTAACTA
1 TTAAATTATCTA
*
22421573 TTAAATTATCGA
1 TTAAATTATCTA
22421585 -TAAATTAT-TA
1 TTAAATTATCTA
22421595 TTAAATTAT
1 TTAAATTAT
22421604 ACTAATTTAC
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.45, C:0.08, G:0.02, T:0.45
Consensus pattern (12 bp):
TTAAATTATCTA
Found at i:22421663 original size:21 final size:22
Alignment explanation
Indices: 22421634--22421676 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
22421624 TCAATGATTA
*
22421634 ACTATTAAATAATCA-TTATTT
1 ACTACTAAATAATCATTTATTT
*
22421655 ACTACTAAATTATCATTTATTT
1 ACTACTAAATAATCATTTATTT
22421677 GCTAATAAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.49
Consensus pattern (22 bp):
ACTACTAAATAATCATTTATTT
Found at i:22421766 original size:44 final size:44
Alignment explanation
Indices: 22421704--22421802 Score: 112
Period size: 44 Copynumber: 2.2 Consensus size: 44
22421694 GATTTACTGC
*
22421704 TATCAATTAA-TTACTATTAAGTTTA-AACTGATTTATTAATAAAT
1 TATCAA-TAATTTACTATTAA-TTTATAACTAATTTATTAATAAAT
* * * * *
22421748 TATCAATAATTTATTATTAATTTATTATTAATTTATTACTAAGT
1 TATCAATAATTTACTATTAATTTATAACTAATTTATTAATAAAT
22421792 TATCAATAATT
1 TATCAATAATT
22421803 AATGACTAAG
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
43 7 0.15
44 40 0.85
ACGTcount: A:0.41, C:0.06, G:0.03, T:0.49
Consensus pattern (44 bp):
TATCAATAATTTACTATTAATTTATAACTAATTTATTAATAAAT
Found at i:22421768 original size:11 final size:11
Alignment explanation
Indices: 22421734--22421802 Score: 75
Period size: 11 Copynumber: 6.3 Consensus size: 11
22421724 GTTTAAACTG
22421734 ATTTATTAATA
1 ATTTATTAATA
* *
22421745 AATTATCAATA
1 ATTTATTAATA
*
22421756 ATTTATTATTA
1 ATTTATTAATA
*
22421767 ATTTATTATTA
1 ATTTATTAATA
*
22421778 ATTTATTACTA
1 ATTTATTAATA
* *
22421789 AGTTATCAATA
1 ATTTATTAATA
22421800 ATT
1 ATT
22421803 AATGACTAAG
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 48 1.00
ACGTcount: A:0.42, C:0.04, G:0.01, T:0.52
Consensus pattern (11 bp):
ATTTATTAATA
Found at i:22421810 original size:22 final size:22
Alignment explanation
Indices: 22421734--22421816 Score: 94
Period size: 22 Copynumber: 3.8 Consensus size: 22
22421724 GTTTAAACTG
* *
22421734 ATTTATTAATAAATTATCAATA
1 ATTTATTACTAAGTTATCAATA
* * * *
22421756 ATTTATTATTAATTTATTATTA
1 ATTTATTACTAAGTTATCAATA
22421778 ATTTATTACTAAGTTATCAATA
1 ATTTATTACTAAGTTATCAATA
* *
22421800 ATTAATGACTAAGTTAT
1 ATTTATTACTAAGTTAT
22421817 AGCTTTTTTT
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 51 1.00
ACGTcount: A:0.42, C:0.05, G:0.04, T:0.49
Consensus pattern (22 bp):
ATTTATTACTAAGTTATCAATA
Found at i:22421976 original size:22 final size:21
Alignment explanation
Indices: 22421951--22422007 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 21
22421941 AAATATAAAC
*
22421951 TATTAACTACTAAATTATCATT
1 TATTTACTACTAAATTATCA-T
* *
22421973 TATTTACTATTAAATTATTAT
1 TATTTACTACTAAATTATCAT
22421994 TAGTTTACTACTAA
1 TA-TTTACTACTAA
22422008 GCTATACTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 3 0.10
22 27 0.90
ACGTcount: A:0.39, C:0.11, G:0.02, T:0.49
Consensus pattern (21 bp):
TATTTACTACTAAATTATCAT
Found at i:22422792 original size:2 final size:2
Alignment explanation
Indices: 22422787--22422817 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
22422777 ATGAGACTTT
22422787 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
22422818 TGATACCAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22425181 original size:2 final size:2
Alignment explanation
Indices: 22425174--22425204 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
22425164 AATCATTAGC
22425174 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22425205 GTTAATAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:22426734 original size:30 final size:30
Alignment explanation
Indices: 22426676--22426753 Score: 95
Period size: 30 Copynumber: 2.6 Consensus size: 30
22426666 AAATTTTTAT
* *
22426676 TTTATTAT-AATTAATTGAGTTCTCAAATA
1 TTTATTATCAATTAATTAAGTTCTAAAATA
* *
22426705 TTTATTATCAATTAATTAATTTTTAAAATA
1 TTTATTATCAATTAATTAAGTTCTAAAATA
* *
22426735 TTTATTTTCATTTAATTAA
1 TTTATTATCAATTAATTAA
22426754 ACTCTCAGTT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
29 8 0.19
30 34 0.81
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (30 bp):
TTTATTATCAATTAATTAAGTTCTAAAATA
Found at i:22426837 original size:16 final size:18
Alignment explanation
Indices: 22426817--22426857 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
22426807 ATTTAATTAG
22426817 ATAAAAA-TAAATATATT
1 ATAAAAATTAAATATATT
*
22426834 -TAAAAATTAAATTTATT
1 ATAAAAATTAAATATATT
22426851 ATAAAAA
1 ATAAAAA
22426858 AAAGGATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 6 0.29
17 9 0.43
18 6 0.29
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
ATAAAAATTAAATATATT
Found at i:22427205 original size:16 final size:16
Alignment explanation
Indices: 22427161--22427207 Score: 76
Period size: 16 Copynumber: 2.9 Consensus size: 16
22427151 TATTTGAATA
*
22427161 ATTTTAAATTTAAATT
1 ATTTTAAATTTAGATT
*
22427177 ATTTCAAATTTAGATT
1 ATTTTAAATTTAGATT
22427193 ATTTTAAATTTAGAT
1 ATTTTAAATTTAGAT
22427208 AGATTCCAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.53
Consensus pattern (16 bp):
ATTTTAAATTTAGATT
Found at i:22427374 original size:16 final size:16
Alignment explanation
Indices: 22427355--22427400 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
22427345 TCATTACGAT
22427355 TTTAAATTATTTCAGC
1 TTTAAATTATTTCAGC
* * *
22427371 TTTAAATTGTTTTAGG
1 TTTAAATTATTTCAGC
*
22427387 TTTATATTATTTCA
1 TTTAAATTATTTCA
22427401 AATCCGAATT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.28, C:0.07, G:0.09, T:0.57
Consensus pattern (16 bp):
TTTAAATTATTTCAGC
Found at i:22427864 original size:24 final size:23
Alignment explanation
Indices: 22427802--22427853 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 23
22427792 ATTTTTTATT
*
22427802 TAATTTTTTAATTATAATTATAA
1 TAATTTTTTAATTATAATTACAA
22427825 TAATTTTTTAAATTATAATTACAA
1 TAATTTTTT-AATTATAATTACAA
22427849 TAATT
1 TAATT
22427854 ATTATTATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
23 9 0.33
24 18 0.67
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (23 bp):
TAATTTTTTAATTATAATTACAA
Found at i:22428101 original size:19 final size:20
Alignment explanation
Indices: 22428064--22428101 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
22428054 TTTATTTTTA
22428064 TTTAAAAATATTAAAATAAC
1 TTTAAAAATATTAAAATAAC
* *
22428084 TTTAATAAT-TTAACATAA
1 TTTAAAAATATTAAAATAA
22428102 TAAATAAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.39
Consensus pattern (20 bp):
TTTAAAAATATTAAAATAAC
Found at i:22428275 original size:140 final size:141
Alignment explanation
Indices: 22428104--22428382 Score: 463
Period size: 140 Copynumber: 2.0 Consensus size: 141
22428094 TAACATAATA
* * *
22428104 AATAAATTTTATTACATAATAATAAATAATATTAATCTGTATTAATATTTTGATTGAATAAATAC
1 AATAAATTTTATTACATAATAATAAAGAATATTAATATGTATTAATATTTTGATTAAATAAATAC
*
22428169 TAAATTCTATAATC-AATAAATATTTAATAAATTAAAAATTAAACATTTTCTAATTAATATGACT
66 TAAATTCTATAATCAAATAAATATTTAATAAATTAAAAA-TAAACATTTTATAATTAATATGACT
22428233 TAACAAAAATTT
130 TAACAAAAATTT
* *
22428245 AATAAA-TTTATTATATATTAATAAAGAATATTAATATGTATTAATATTTTGATTAAATAAATAC
1 AATAAATTTTATTACATAATAATAAAGAATATTAATATGTATTAATATTTTGATTAAATAAATAC
* *
22428309 TAAATTTTATAATCAAATAAATATTTAATAAATTAAAAATAAATATTTTATAATTAATATGACTT
66 TAAATTCTATAATCAAATAAATATTTAATAAATTAAAAATAAACATTTTATAATTAATATGACTT
22428374 AACAAAAAT
131 AACAAAAAT
22428383 ATATAATTAC
Statistics
Matches: 129, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
140 99 0.77
141 30 0.23
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (141 bp):
AATAAATTTTATTACATAATAATAAAGAATATTAATATGTATTAATATTTTGATTAAATAAATAC
TAAATTCTATAATCAAATAAATATTTAATAAATTAAAAATAAACATTTTATAATTAATATGACTT
AACAAAAATTT
Found at i:22428351 original size:22 final size:21
Alignment explanation
Indices: 22428323--22428365 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
22428313 TTTTATAATC
22428323 AAATAAATATTTAATAAATTAA
1 AAATAAATATTTAAT-AATTAA
*
22428345 AAATAAATATTTTATAATTAA
1 AAATAAATATTTAATAATTAA
22428366 TATGACTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
AAATAAATATTTAATAATTAA
Found at i:22429155 original size:20 final size:20
Alignment explanation
Indices: 22429130--22429182 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
22429120 ACAGAGGGTT
22429130 TATTCCAAACTCTTTTGCTA
1 TATTCCAAACTCTTTTGCTA
22429150 TATTCCAAACTCTTTTGCTA
1 TATTCCAAACTCTTTTGCTA
22429170 TATTCCAAACTCT
1 TATTCCAAACTCT
22429183 ACAATACCGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.26, C:0.26, G:0.04, T:0.43
Consensus pattern (20 bp):
TATTCCAAACTCTTTTGCTA
Found at i:22433791 original size:30 final size:30
Alignment explanation
Indices: 22433721--22433827 Score: 103
Period size: 30 Copynumber: 3.6 Consensus size: 30
22433711 ATACTCTTCG
* * * *
22433721 ATTTTT-AGGAATTTAATCCCTATAGTATT
1 ATTTTTAAGAAATTTAATCTCTAAAATATT
*
22433750 A-TTTAAAGAAATTTAATCAT-TAAAATATT
1 ATTTTTAAGAAATTTAATC-TCTAAAATATT
* *
22433779 ATTTTTAAGAAATTTAATCTCTATAGTATT
1 ATTTTTAAGAAATTTAATCTCTAAAATATT
*
22433809 ATTTTTTAAGGAATTTAAT
1 A-TTTTTAAGAAATTTAAT
22433828 TCAAGTACAT
Statistics
Matches: 64, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
28 3 0.05
29 21 0.33
30 24 0.38
31 16 0.25
ACGTcount: A:0.39, C:0.06, G:0.07, T:0.48
Consensus pattern (30 bp):
ATTTTTAAGAAATTTAATCTCTAAAATATT
Found at i:22434626 original size:23 final size:24
Alignment explanation
Indices: 22434576--22434627 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 24
22434566 GTTTGGTTTG
* *
22434576 GAATTATAAAAAGAAATTGAAAGGA
1 GAATTAAAAAAAGAAATT-AAAGAA
*
22434601 GAATTAAAAAAAGGAATT-AAGAA
1 GAATTAAAAAAAGAAATTAAAGAA
22434624 GAAT
1 GAAT
22434628 GAGTTGGTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 8 0.33
25 16 0.67
ACGTcount: A:0.62, C:0.00, G:0.19, T:0.19
Consensus pattern (24 bp):
GAATTAAAAAAAGAAATTAAAGAA
Found at i:22434952 original size:16 final size:17
Alignment explanation
Indices: 22434926--22434961 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
22434916 TAAATTCTTA
22434926 AATTATTTTATTTTTAT
1 AATTATTTTATTTTTAT
*
22434943 AATT-TTTTATTTTTTT
1 AATTATTTTATTTTTAT
22434959 AAT
1 AAT
22434962 ATTATATCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (17 bp):
AATTATTTTATTTTTAT
Found at i:22445353 original size:34 final size:34
Alignment explanation
Indices: 22445315--22445381 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
22445305 TCCCATTACA
*
22445315 TGGTTCCTTTTAAATCAAATATCATCTTTTCATG
1 TGGTTCCTTTTAAATCAAATATCATATTTTCATG
22445349 TGGTTCCTTTTAAATCAAATATCATATTTTCAT
1 TGGTTCCTTTTAAATCAAATATCATATTTTCAT
22445382 AATCATTTTG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.28, C:0.16, G:0.07, T:0.48
Consensus pattern (34 bp):
TGGTTCCTTTTAAATCAAATATCATATTTTCATG
Found at i:22448190 original size:34 final size:35
Alignment explanation
Indices: 22448130--22448204 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 35
22448120 AATATTTTAA
*
22448130 TTAATTAAATTTAATATGATAATATTATATTTCTT
1 TTAATTAAATTTAATATGATAATATTATATTTATT
* **
22448165 TTAATTAAATTT-ATATGTTGTTATTATATTTATT
1 TTAATTAAATTTAATATGATAATATTATATTTATT
*
22448199 TCAATT
1 TTAATT
22448205 TGAAATCAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
34 23 0.66
35 12 0.34
ACGTcount: A:0.36, C:0.03, G:0.04, T:0.57
Consensus pattern (35 bp):
TTAATTAAATTTAATATGATAATATTATATTTATT
Found at i:22448692 original size:13 final size:12
Alignment explanation
Indices: 22448660--22448697 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
22448650 GCTGATATGT
22448660 ACATATATTTTA
1 ACATATATTTTA
22448672 ACATATATTTCTA
1 ACATATATTT-TA
22448685 GA-ATATATTTTA
1 -ACATATATTTTA
22448697 A
1 A
22448698 GTTAGATTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 1 0.04
12 12 0.50
13 10 0.42
14 1 0.04
ACGTcount: A:0.42, C:0.08, G:0.03, T:0.47
Consensus pattern (12 bp):
ACATATATTTTA
Found at i:22452115 original size:97 final size:97
Alignment explanation
Indices: 22451986--22452165 Score: 324
Period size: 97 Copynumber: 1.9 Consensus size: 97
22451976 AAAAACAAAT
*
22451986 AAAAAAAAGAAAGAAGAAAGGAAGGATAACACCGCCGTCAACGGCTGAAGCACCACTTTTAACCG
1 AAAAAAAAGAAAGAAGAAAAGAAGGATAACACCGCCGTCAACGGCTGAAGCACCACTTTTAACCG
*
22452051 CAAAAATAAGAATTACCTTAAAAACAAATAAA
66 CAAAAACAAGAATTACCTTAAAAACAAATAAA
*
22452083 AAAAAAAAGAAAGAAGAAAAGAAGGATAACACCGCCGTCAACGGCTGAAGCACCGCTTTTAACCG
1 AAAAAAAAGAAAGAAGAAAAGAAGGATAACACCGCCGTCAACGGCTGAAGCACCACTTTTAACCG
*
22452148 CAAAAACAAGATTTACCT
66 CAAAAACAAGAATTACCT
22452166 CGATGTCGAA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
97 79 1.00
ACGTcount: A:0.50, C:0.20, G:0.17, T:0.13
Consensus pattern (97 bp):
AAAAAAAAGAAAGAAGAAAAGAAGGATAACACCGCCGTCAACGGCTGAAGCACCACTTTTAACCG
CAAAAACAAGAATTACCTTAAAAACAAATAAA
Found at i:22452264 original size:15 final size:15
Alignment explanation
Indices: 22452244--22452273 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
22452234 AGAGAGTGGC
22452244 GTCTGACTTTTCTGA
1 GTCTGACTTTTCTGA
22452259 GTCTGACTTTTCTGA
1 GTCTGACTTTTCTGA
22452274 AAGGCAAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.20, G:0.20, T:0.47
Consensus pattern (15 bp):
GTCTGACTTTTCTGA
Found at i:22452463 original size:23 final size:23
Alignment explanation
Indices: 22452437--22452485 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
22452427 TAGCACTTTG
* * *
22452437 TTTTAATTGTTTTAAAGCCCATT
1 TTTTAATTGCTATAAAGCCCAAT
22452460 TTTTAATTGCTATAAAGCCCAAT
1 TTTTAATTGCTATAAAGCCCAAT
22452483 TTT
1 TTT
22452486 AAAGGTCTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.08, T:0.49
Consensus pattern (23 bp):
TTTTAATTGCTATAAAGCCCAAT
Found at i:22454156 original size:17 final size:17
Alignment explanation
Indices: 22454134--22454168 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
22454124 GAAACAACAA
22454134 AGTTTTTACTTAAAGAT
1 AGTTTTTACTTAAAGAT
*
22454151 AGTTTTTGCTTAAAGAT
1 AGTTTTTACTTAAAGAT
22454168 A
1 A
22454169 TTTGTAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.34, C:0.06, G:0.14, T:0.46
Consensus pattern (17 bp):
AGTTTTTACTTAAAGAT
Found at i:22455974 original size:62 final size:62
Alignment explanation
Indices: 22455903--22456031 Score: 181
Period size: 62 Copynumber: 2.1 Consensus size: 62
22455893 TCATAAATCC
* *
22455903 TAAAATATAAAAAGATTATTTAA-AGGGTTTTCTATACAAAAATGCTTTAAATAATTCA-TTTA
1 TAAAATATAAAAAGATTATTTAAGA-GGTCTTCTATACAAAAAAGCTTTAAATAA-TCATTTTA
* * *
22455965 TAAAATATAAAAAGATTATTTAAGATGTCTTCTGTATAAAAAAGCTTTAAATAATCATTTTA
1 TAAAATATAAAAAGATTATTTAAGAGGTCTTCTATACAAAAAAGCTTTAAATAATCATTTTA
22456027 TAAAA
1 TAAAA
22456032 ATATTAACCA
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
61 3 0.05
62 56 0.93
63 1 0.02
ACGTcount: A:0.48, C:0.06, G:0.08, T:0.38
Consensus pattern (62 bp):
TAAAATATAAAAAGATTATTTAAGAGGTCTTCTATACAAAAAAGCTTTAAATAATCATTTTA
Found at i:22456142 original size:105 final size:106
Alignment explanation
Indices: 22455979--22456176 Score: 276
Period size: 105 Copynumber: 1.9 Consensus size: 106
22455969 ATATAAAAAG
* * *
22455979 ATTATTTAAGATGTCTTCTGTATAAAAAAGCTTTAAATAATCATTTTATAAAAATATTAACCATA
1 ATTATTTAAGATATCTTCTGTACAAAAAAGCATTAAATAATCATTTTATAAAAATATTAACCATA
22456044 AACCTTAAAATATAAAA-GACTATTTAAGGCGTTTTTGTAC
66 AACCTTAAAATATAAAAGGACTATTTAAGGCGTTTTTGTAC
* * **
22456084 ATTATTTAAGATATTTTTTGTACAAAAATA-CATTAAATAATTC-TTTTATAAAAATATTAACTT
1 ATTATTTAAGATATCTTCTGTACAAAAA-AGCATTAAATAA-TCATTTTATAAAAATATTAACCA
* *
22456147 TAAATCTTAAAATATAAAAGGATTATTTAA
64 TAAACCTTAAAATATAAAAGGACTATTTAA
22456177 AGTATTTTTT
Statistics
Matches: 81, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
105 69 0.85
106 12 0.15
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.40
Consensus pattern (106 bp):
ATTATTTAAGATATCTTCTGTACAAAAAAGCATTAAATAATCATTTTATAAAAATATTAACCATA
AACCTTAAAATATAAAAGGACTATTTAAGGCGTTTTTGTAC
Found at i:22462228 original size:17 final size:20
Alignment explanation
Indices: 22462183--22462230 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
22462173 CGTCTTTAAT
22462183 AATA-AATAATTACAATGAA
1 AATATAATAATTACAATGAA
22462202 AATATAATAATTACAATGAA
1 AATATAATAATTACAATGAA
22462222 AATATAATA
1 AATATAATA
22462231 TAAGTATTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 4 0.14
20 24 0.86
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.29
Consensus pattern (20 bp):
AATATAATAATTACAATGAA
Found at i:22468311 original size:21 final size:21
Alignment explanation
Indices: 22468285--22468333 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
22468275 TGAAATAGTG
*
22468285 TCTTGCATTGCTTTTATTTTT
1 TCTTGCATTGCTTCTATTTTT
22468306 TCTTGCATTGCTTCTATTTTT
1 TCTTGCATTGCTTCTATTTTT
*
22468327 TTTTGCA
1 TCTTGCA
22468334 ATACTTGAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.10, C:0.16, G:0.10, T:0.63
Consensus pattern (21 bp):
TCTTGCATTGCTTCTATTTTT
Found at i:22478139 original size:22 final size:22
Alignment explanation
Indices: 22478114--22478155 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
22478104 TTGTCTATCC
* *
22478114 TAATTTTAGGGATACAAATACT
1 TAATTCTAGAGATACAAATACT
*
22478136 TAATTCTAGATATACAAATA
1 TAATTCTAGAGATACAAATA
22478156 TAAATATACA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.36
Consensus pattern (22 bp):
TAATTCTAGAGATACAAATACT
Found at i:22481844 original size:23 final size:24
Alignment explanation
Indices: 22481788--22481846 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
22481778 AAAGGGTTTG
* *
22481788 GCAATGAAGGCCTAAACAGGATTC
1 GCAATGAAGGCCTAAACAGAAATC
22481812 GACAATGAAGGCCTAAA-A-AAATC
1 G-CAATGAAGGCCTAAACAGAAATC
22481835 AGCAATGAAGGC
1 -GCAATGAAGGC
22481847 TGAAAATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
23 13 0.42
24 3 0.10
25 15 0.48
ACGTcount: A:0.44, C:0.19, G:0.24, T:0.14
Consensus pattern (24 bp):
GCAATGAAGGCCTAAACAGAAATC
Found at i:22482518 original size:142 final size:142
Alignment explanation
Indices: 22482330--22482610 Score: 544
Period size: 142 Copynumber: 2.0 Consensus size: 142
22482320 TAAAAGCCTA
22482330 ATGTAACTCCATTGAGTTTTAAGAAAACTGTTGGGGTTAGAAGTGTTGCTGCTAACAAGCCTTGT
1 ATGTAACTCCATTGAGTTTTAAGAAAACTGTTGGGGTTAGAAGTGTTGCTGCTAACAAGCCTTGT
*
22482395 TTTTCCAAGCATTAGAATGCGTTACTTTAGTCAATGATCATTCTGTTCTATGTTACCACAATTTT
66 TTTTCCAAGCACTAGAATGCGTTACTTTAGTCAATGATCATTCTGTTCTATGTTACCACAATTTT
22482460 TCTCAATGTTTC
131 TCTCAATGTTTC
22482472 ATGTAACTCCATTGAGTTTTAAGAAAACTGTTGGGGTTAGAAGTGTTGCTGCTAACAAGCCTTGT
1 ATGTAACTCCATTGAGTTTTAAGAAAACTGTTGGGGTTAGAAGTGTTGCTGCTAACAAGCCTTGT
*
22482537 TTTTCCAAGCACTAGAATGCGTTACTTTAGTCTATGATCATTCTGTTCTATGTTACCACAATTTT
66 TTTTCCAAGCACTAGAATGCGTTACTTTAGTCAATGATCATTCTGTTCTATGTTACCACAATTTT
22482602 TCTCAATGT
131 TCTCAATGT
22482611 GTCTTTTAGG
Statistics
Matches: 137, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
142 137 1.00
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.39
Consensus pattern (142 bp):
ATGTAACTCCATTGAGTTTTAAGAAAACTGTTGGGGTTAGAAGTGTTGCTGCTAACAAGCCTTGT
TTTTCCAAGCACTAGAATGCGTTACTTTAGTCAATGATCATTCTGTTCTATGTTACCACAATTTT
TCTCAATGTTTC
Found at i:22483989 original size:14 final size:15
Alignment explanation
Indices: 22483940--22483991 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
22483930 TTTTAAAAAG
*
22483940 TAATATTTAATTAATT
1 TAATATTTAAAT-ATT
*
22483956 TGATATTTAAAT-TT
1 TAATATTTAAATATT
*
22483970 TAATATTTATATATT
1 TAATATTTAAATATT
22483985 TATATAT
1 TA-ATAT
22483992 GTTTTATTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
14 12 0.40
15 4 0.13
16 14 0.47
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (15 bp):
TAATATTTAAATATT
Found at i:22486638 original size:67 final size:67
Alignment explanation
Indices: 22486529--22486666 Score: 179
Period size: 67 Copynumber: 2.1 Consensus size: 67
22486519 AATAGACAGG
* ** * * **
22486529 TTTTGATGATAATGAAAATTTTGTGGTGCTCAAAACTGTCTTAATGCTCAAGATATTAGGGTCTT
1 TTTTGATGATAATGAAAATTTTGTGGTACTCAAAACCATCTTAATCCTCAAGAGATTAGCATCTT
22486594 CC
66 CC
* *
22486596 TTTTGATGATAATGAAAATTTAT-TGGTACTCAAAACCATCTTATTCCTCAATAGATTAGCATCT
1 TTTTGATGATAATGAAAATTT-TGTGGTACTCAAAACCATCTTAATCCTCAAGAGATTAGCATCT
22486660 TCC
65 TCC
22486663 TTTT
1 TTTT
22486667 TACATTCTAT
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
67 60 0.98
68 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.14, T:0.41
Consensus pattern (67 bp):
TTTTGATGATAATGAAAATTTTGTGGTACTCAAAACCATCTTAATCCTCAAGAGATTAGCATCTT
CC
Found at i:22496579 original size:2 final size:2
Alignment explanation
Indices: 22496572--22496600 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
22496562 TTAATAGCCT
22496572 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
22496601 TCTCCTTATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22499924 original size:8 final size:8
Alignment explanation
Indices: 22499911--22499951 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
22499901 TTTTTATTTA
22499911 TATATATT
1 TATATATT
*
22499919 TATATAAT
1 TATATATT
22499927 TATATATT
1 TATATATT
*
22499935 TAAATATT
1 TATATATT
22499943 TATAT-TT
1 TATATATT
22499950 TA
1 TA
22499952 AAAAATAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
7 4 0.14
8 25 0.86
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (8 bp):
TATATATT
Found at i:22499934 original size:16 final size:15
Alignment explanation
Indices: 22499911--22499966 Score: 58
Period size: 16 Copynumber: 3.6 Consensus size: 15
22499901 TTTTTATTTA
*
22499911 TATATATTTATATAAT
1 TATAT-TTTAAATAAT
*
22499927 TATATATTTAAATATT
1 TATAT-TTTAAATAAT
*
22499943 TATATTTTAAAAAAT
1 TATATTTTAAATAAT
*
22499958 AATATTTTA
1 TATATTTTA
22499967 TATTTAAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
15 16 0.46
16 19 0.54
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
TATATTTTAAATAAT
Found at i:22499994 original size:23 final size:21
Alignment explanation
Indices: 22499937--22499988 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
22499927 TATATATTTA
22499937 AATA-TTTATATTTTAAAAAAT
1 AATATTTTATA-TTTAAAAAAT
22499958 AATATTTTATATTTAAAAAAT
1 AATATTTTATATTTAAAAAAT
22499979 AATATTTTAT
1 AATATTTTAT
22499989 TGATTTCGGA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 24 0.80
22 6 0.20
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
AATATTTTATATTTAAAAAAT
Found at i:22500068 original size:10 final size:10
Alignment explanation
Indices: 22500053--22500082 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
22500043 AGTTTGAGTA
22500053 TAAAAAAAAT
1 TAAAAAAAAT
22500063 T-AAAAAAAT
1 TAAAAAAAAT
22500072 TAAAAAAAAT
1 TAAAAAAAAT
22500082 T
1 T
22500083 CGAATCGGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (10 bp):
TAAAAAAAAT
Found at i:22500069 original size:9 final size:9
Alignment explanation
Indices: 22500055--22500079 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
22500045 TTTGAGTATA
22500055 AAAAAAATT
1 AAAAAAATT
22500064 AAAAAAATT
1 AAAAAAATT
22500073 AAAAAAA
1 AAAAAAA
22500080 ATTCGAATCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (9 bp):
AAAAAAATT
Found at i:22500836 original size:22 final size:22
Alignment explanation
Indices: 22500793--22500839 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
22500783 TAAAAATAAG
* **
22500793 CTTGTGAAATCGAAGCTGCAAC
1 CTTGTGAAATCGAAACCACAAC
*
22500815 CTTGTGAAATCTAAACCACAAC
1 CTTGTGAAATCGAAACCACAAC
22500837 CTT
1 CTT
22500840 CACAAAATCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.26
Consensus pattern (22 bp):
CTTGTGAAATCGAAACCACAAC
Found at i:22506883 original size:21 final size:19
Alignment explanation
Indices: 22506852--22506890 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
22506842 TTTTGATTTT
*
22506852 TTTTATTGGTTTAGGGTTG
1 TTTTATTGGTTTAAGGTTG
22506871 TTTTATTTGGGTTTAAGGTT
1 TTTTA-TT-GGTTTAAGGTT
22506891 AAATATTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 2 0.12
21 10 0.59
ACGTcount: A:0.13, C:0.00, G:0.28, T:0.59
Consensus pattern (19 bp):
TTTTATTGGTTTAAGGTTG
Found at i:22514309 original size:2 final size:2
Alignment explanation
Indices: 22514302--22514326 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
22514292 GTCTTTGTTT
22514302 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
22514327 AGCTTCACGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:22514991 original size:11 final size:11
Alignment explanation
Indices: 22514975--22514999 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
22514965 TCAATGAATC
22514975 TTTTATTTTCT
1 TTTTATTTTCT
22514986 TTTTATTTTCT
1 TTTTATTTTCT
22514997 TTT
1 TTT
22515000 CTTTGAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTATTTTCT
Found at i:22515429 original size:21 final size:24
Alignment explanation
Indices: 22515397--22515449 Score: 67
Period size: 21 Copynumber: 2.3 Consensus size: 24
22515387 ATTTTCGCCC
*
22515397 AAAAATAAGCC-TTTAT-AATTA-
1 AAAAAAAAGCCTTTTATCAATTAT
*
22515418 ACAAAAAAGCCTTTTATCAATTAT
1 AAAAAAAAGCCTTTTATCAATTAT
22515442 AAAAAAAA
1 AAAAAAAA
22515450 ATTAAACATT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
21 9 0.35
22 5 0.19
23 5 0.19
24 7 0.27
ACGTcount: A:0.57, C:0.11, G:0.04, T:0.28
Consensus pattern (24 bp):
AAAAAAAAGCCTTTTATCAATTAT
Found at i:22519399 original size:27 final size:27
Alignment explanation
Indices: 22519369--22519423 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
22519359 TATAACACCC
* *
22519369 ACAACACCCATAACATCCACACAAACT
1 ACAAAACCCATAACATCAACACAAACT
* * *
22519396 ACAAAAGCCATACCATCAAGACAAACT
1 ACAAAACCCATAACATCAACACAAACT
22519423 A
1 A
22519424 AAGCAACCAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.51, C:0.35, G:0.04, T:0.11
Consensus pattern (27 bp):
ACAAAACCCATAACATCAACACAAACT
Found at i:22524562 original size:4 final size:4
Alignment explanation
Indices: 22524553--22524587 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
22524543 TGCCCGACTG
22524553 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA
22524588 TATATATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAA
Found at i:22524781 original size:27 final size:27
Alignment explanation
Indices: 22524749--22524800 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
22524739 AAGTAAAATA
*
22524749 TGATAATTTTTTATATAATTTTGATTT
1 TGATAATTTTTTATAAAATTTTGATTT
22524776 TGATAATTTTTTATAAAATTTTGAT
1 TGATAATTTTTTATAAAATTTTGAT
22524801 AACTTTCTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.60
Consensus pattern (27 bp):
TGATAATTTTTTATAAAATTTTGATTT
Found at i:22524798 original size:21 final size:21
Alignment explanation
Indices: 22524772--22524828 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
22524762 TATAATTTTG
* *
22524772 ATTTTGATAATTTTTTATAAA
1 ATTTTGATAACTTTCTATAAA
*
22524793 ATTTTGATAACTTTCTATATA
1 ATTTTGATAACTTTCTATAAA
*
22524814 GTTTTGATAACTTTC
1 ATTTTGATAACTTTC
22524829 AATATTAGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.32, C:0.07, G:0.07, T:0.54
Consensus pattern (21 bp):
ATTTTGATAACTTTCTATAAA
Found at i:22524833 original size:21 final size:21
Alignment explanation
Indices: 22524794--22524860 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
22524784 TTTTATAAAA
*
22524794 TTTTGATAACTTTCTATATAG
1 TTTTGATAACTTTCAATATAG
22524815 TTTTGATAACTTTCAATATTAG
1 TTTTGATAACTTTCAATA-TAG
* *
22524837 -TTTAATAA-TTTATAATATAG
1 TTTTGATAACTTT-CAATATAG
22524857 TTTT
1 TTTT
22524861 AGTAATCATT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
20 6 0.15
21 31 0.77
22 3 0.08
ACGTcount: A:0.33, C:0.06, G:0.07, T:0.54
Consensus pattern (21 bp):
TTTTGATAACTTTCAATATAG
Found at i:22525225 original size:22 final size:22
Alignment explanation
Indices: 22525111--22525371 Score: 118
Period size: 22 Copynumber: 12.0 Consensus size: 22
22525101 TAAGTATAAC
* *
22525111 TAAATTTATCAATGATTAACAAT
1 TAAA-TTATCAATGATTTACTAT
*
22525134 TAAATTATCATTGA-TT--TAT
1 TAAATTATCAATGATTTACTAT
* ** * *
22525153 TATATTATCAACAATTTACGAC
1 TAAATTATCAATGATTTACTAT
* * * * **
22525175 TAAGTTATTAATGATATATTGC
1 TAAATTATCAATGATTTACTAT
* *
22525197 TATATTACCAATGATTTACTAT
1 TAAATTATCAATGATTTACTAT
* * *
22525219 TAAATTAGCATTGATTTACTAG
1 TAAATTATCAATGATTTACTAT
* * * *
22525241 TAATTTATAAATAATTTACTAC
1 TAAATTATCAATGATTTACTAT
* * * *
22525263 TAAGTTATAAATAATTTATTAT
1 TAAATTATCAATGATTTACTAT
* * * *
22525285 TAAATTGTTAATTATTTACTAC
1 TAAATTATCAATGATTTACTAT
* * *
22525307 TAAGTTA-CTGATGATTTATTAT
1 TAAATTATC-AATGATTTACTAT
* *
22525329 AAAATTAT-AATTTATTTACTAT
1 TAAATTATCAA-TGATTTACTAT
* *
22525351 TAATTTATCGATGATTTACTA
1 TAAATTATCAATGATTTACTA
22525372 CAAAGTTATC
Statistics
Matches: 170, Mismatches: 61, Indels: 15
0.69 0.25 0.06
Matches are distributed among these distances:
19 12 0.07
20 2 0.01
21 2 0.01
22 149 0.88
23 5 0.03
ACGTcount: A:0.39, C:0.08, G:0.07, T:0.46
Consensus pattern (22 bp):
TAAATTATCAATGATTTACTAT
Found at i:22525324 original size:44 final size:44
Alignment explanation
Indices: 22525245--22525368 Score: 135
Period size: 44 Copynumber: 2.8 Consensus size: 44
22525235 TACTAGTAAT
* * * * *
22525245 TTATAAATAATTTACTACTAAGTTATAAATAATTTATTATTAAA
1 TTATAATTTATTTACTACTAAGTTATAGATGATTTATTATAAAA
*
22525289 TTGTTAA-TTATTTACTACTAAGTTACT-GATGATTTATTATAAAA
1 TT-ATAATTTATTTACTACTAAGTTA-TAGATGATTTATTATAAAA
* * *
22525333 TTATAATTTATTTACTATTAATTTATCGATGATTTA
1 TTATAATTTATTTACTACTAAGTTATAGATGATTTA
22525369 CTACAAAGTT
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
43 4 0.06
44 60 0.88
45 4 0.06
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.49
Consensus pattern (44 bp):
TTATAATTTATTTACTACTAAGTTATAGATGATTTATTATAAAA
Found at i:22525380 original size:22 final size:22
Alignment explanation
Indices: 22525298--22525381 Score: 55
Period size: 22 Copynumber: 3.8 Consensus size: 22
22525288 ATTGTTAATT
*
22525298 ATTTACTACTAAGTTA-CTGATG
1 ATTTACTACAAAGTTATC-GATG
* * * * *
22525320 ATTTATTATAAAATTAT-AATTT
1 ATTTACTACAAAGTTATCGA-TG
** *
22525342 ATTTACTATTAATTTATCGATG
1 ATTTACTACAAAGTTATCGATG
22525364 ATTTACTACAAAGTTATC
1 ATTTACTACAAAGTTATC
22525382 AAAAATTAAT
Statistics
Matches: 45, Mismatches: 14, Indels: 6
0.69 0.22 0.09
Matches are distributed among these distances:
21 1 0.02
22 43 0.96
23 1 0.02
ACGTcount: A:0.37, C:0.10, G:0.07, T:0.46
Consensus pattern (22 bp):
ATTTACTACAAAGTTATCGATG
Found at i:22525408 original size:74 final size:74
Alignment explanation
Indices: 22525320--22525462 Score: 189
Period size: 74 Copynumber: 1.9 Consensus size: 74
22525310 GTTACTGATG
* * * * *
22525320 ATTTATTATAAAATTATAATTTATTTACTATTAATTTATCGATGATTTACTACAAAGTTATCAAA
1 ATTTATTATAAAATTATAATTGATTTACAATTAAATTATCAATGATGTACTACAAAGTTATCAAA
22525385 AATTAATTA
66 AATTAATTA
* * *
22525394 ATTTATTACT-AAATTATCATTGATTTACAATTAAATTATTAATGATGTACTACTAAGTTATCAA
1 ATTTATTA-TAAAATTATAATTGATTTACAATTAAATTATCAATGATGTACTACAAAGTTATCAA
*
22525458 TAATT
65 AAATT
22525463 TACATCTAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
74 58 0.98
75 1 0.02
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.45
Consensus pattern (74 bp):
ATTTATTATAAAATTATAATTGATTTACAATTAAATTATCAATGATGTACTACAAAGTTATCAAA
AATTAATTA
Found at i:22525439 original size:22 final size:21
Alignment explanation
Indices: 22525403--22525480 Score: 66
Period size: 22 Copynumber: 3.6 Consensus size: 21
22525393 AATTTATTAC
*
22525403 TAAATTATCATTGATTTACAAT
1 TAAATTATCAATGATTTAC-AT
* * *
22525425 TAAATTATTAATGATGTACTAC
1 TAAATTATCAATGATTTAC-AT
* *
22525447 TAAGTTATCAATAATTTACAT
1 TAAATTATCAATGATTTACAT
*
22525468 CTAAATTAGCAAT
1 -TAAATTATCAAT
22525481 AAATTATTAA
Statistics
Matches: 43, Mismatches: 12, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
21 1 0.02
22 42 0.98
ACGTcount: A:0.42, C:0.10, G:0.06, T:0.41
Consensus pattern (21 bp):
TAAATTATCAATGATTTACAT
Found at i:22525530 original size:22 final size:22
Alignment explanation
Indices: 22525490--22525532 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
22525480 TAAATTATTA
*
22525490 ATTATGTTATTATGCATTTACT
1 ATTATGTTATTATGAATTTACT
*
22525512 ATTATGTTATTATTAATTTAC
1 ATTATGTTATTATGAATTTAC
22525533 CACTTAGTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.56
Consensus pattern (22 bp):
ATTATGTTATTATGAATTTACT
Found at i:22525650 original size:22 final size:22
Alignment explanation
Indices: 22525568--22525651 Score: 82
Period size: 22 Copynumber: 3.9 Consensus size: 22
22525558 AATCATCACA
*
22525568 AATTTATTATTAAATTAATCAT
1 AATTTATTATTAAATTATTCAT
* * *
22525590 AATTCATTATCAATTTA-TCACT
1 AATTTATTATTAAATTATTCA-T
*
22525612 ATTTTA-TATTAAATTATTCAT
1 AATTTATTATTAAATTATTCAT
* *
22525633 AATTTACTATTAAGTTATT
1 AATTTATTATTAAATTATT
22525652 TAACTATTAA
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
21 17 0.34
22 33 0.66
ACGTcount: A:0.39, C:0.08, G:0.01, T:0.51
Consensus pattern (22 bp):
AATTTATTATTAAATTATTCAT
Found at i:22525659 original size:16 final size:15
Alignment explanation
Indices: 22525634--22525667 Score: 59
Period size: 16 Copynumber: 2.2 Consensus size: 15
22525624 ATTATTCATA
22525634 ATTTACTATTAAGTT
1 ATTTACTATTAAGTT
22525649 ATTTAACTATTAAGTT
1 ATTT-ACTATTAAGTT
22525665 ATT
1 ATT
22525668 GATGATTAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.53
Consensus pattern (15 bp):
ATTTACTATTAAGTT
Found at i:22525758 original size:23 final size:23
Alignment explanation
Indices: 22525732--22525775 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
22525722 ACGATTAAAT
22525732 TATC-ATTAATTTACTACTAAGTG
1 TATCAATTAA-TTACTACTAAGTG
22525755 TATCAATTAATTACTACTAAG
1 TATCAATTAATTACTACTAAG
22525776 ATGAAATTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.39, C:0.14, G:0.07, T:0.41
Consensus pattern (23 bp):
TATCAATTAATTACTACTAAGTG
Found at i:22525811 original size:21 final size:22
Alignment explanation
Indices: 22525725--22525844 Score: 93
Period size: 22 Copynumber: 5.5 Consensus size: 22
22525715 ATAATATACG
*
22525725 ATTAAATTATCATTAATTTACT
1 ATTAAATTATCATTAATTTATT
* * *
22525747 ACTAAGTGTATCAATTAA-TTACT
1 ATTAAAT-TATC-ATTAATTTATT
* * * *
22525770 ACTAAGATGA-AATTGATTTATT
1 ATTAA-ATTATCATTAATTTATT
22525792 ATTAAATTAT-ATTAATTTATT
1 ATTAAATTATCATTAATTTATT
* *
22525813 ATTAAATTATCTTTGATTTATT
1 ATTAAATTATCATTAATTTATT
*
22525835 ATTAACTTAT
1 ATTAAATTAT
22525845 TAATGATTAA
Statistics
Matches: 79, Mismatches: 13, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
21 27 0.34
22 31 0.39
23 15 0.19
24 6 0.08
ACGTcount: A:0.39, C:0.07, G:0.05, T:0.49
Consensus pattern (22 bp):
ATTAAATTATCATTAATTTATT
Found at i:22525815 original size:11 final size:11
Alignment explanation
Indices: 22525785--22525846 Score: 65
Period size: 11 Copynumber: 5.7 Consensus size: 11
22525775 GATGAAATTG
22525785 ATTTATTATTA
1 ATTTATTATTA
*
22525796 AATTA-TATTA
1 ATTTATTATTA
22525806 ATTTATTATTA
1 ATTTATTATTA
* *
22525817 AATTATCT-TTG
1 ATTTAT-TATTA
22525828 ATTTATTATTA
1 ATTTATTATTA
*
22525839 ACTTATTA
1 ATTTATTA
22525847 ATGATTAACT
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
10 10 0.24
11 30 0.73
12 1 0.02
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.58
Consensus pattern (11 bp):
ATTTATTATTA
Found at i:22525851 original size:22 final size:22
Alignment explanation
Indices: 22525781--22525852 Score: 94
Period size: 22 Copynumber: 3.3 Consensus size: 22
22525771 CTAAGATGAA
22525781 ATTGATTTATTATTAAATTA-T
1 ATTGATTTATTATTAAATTATT
*
22525802 ATTAATTTATTATTAAATTATCT
1 ATTGATTTATTATTAAATTAT-T
*
22525825 -TTGATTTATTATTAACTTATT
1 ATTGATTTATTATTAAATTATT
*
22525846 AATGATT
1 ATTGATT
22525853 AACTACTAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
21 20 0.45
22 23 0.52
23 1 0.02
ACGTcount: A:0.36, C:0.03, G:0.04, T:0.57
Consensus pattern (22 bp):
ATTGATTTATTATTAAATTATT
Found at i:22526186 original size:22 final size:22
Alignment explanation
Indices: 22526161--22526236 Score: 73
Period size: 22 Copynumber: 3.5 Consensus size: 22
22526151 ATAATTGACA
*
22526161 ATTAAATTATCAGTTATTTACT
1 ATTAAATTATCAATTATTTACT
*
22526183 ATTAAATTATTAATTATTTACT
1 ATTAAATTATCAATTATTTACT
* * * *
22526205 -TTTAATCTATGAATAATTTACC
1 ATTAAAT-TATCAATTATTTACT
*
22526227 ATTAAGTTAT
1 ATTAAATTAT
22526237 GAAAGATTTA
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
21 5 0.11
22 35 0.80
23 4 0.09
ACGTcount: A:0.38, C:0.08, G:0.04, T:0.50
Consensus pattern (22 bp):
ATTAAATTATCAATTATTTACT
Found at i:22526237 original size:22 final size:22
Alignment explanation
Indices: 22526176--22526266 Score: 71
Period size: 22 Copynumber: 4.2 Consensus size: 22
22526166 ATTATCAGTT
* * * *
22526176 ATTTACTATTAAATTATTAATT
1 ATTTACCATTAAGTTATGAATA
**
22526198 ATTTACTTTTAA-TCTATGAATA
1 ATTTACCATTAAGT-TATGAATA
22526220 ATTTACCATTAAGTTATGAA-A
1 ATTTACCATTAAGTTATGAATA
* *
22526241 GATTTATCATTAAGTTA-GAATG
1 -ATTTACCATTAAGTTATGAATA
22526263 ATTT
1 ATTT
22526267 TTATAAATTA
Statistics
Matches: 58, Mismatches: 7, Indels: 9
0.78 0.09 0.12
Matches are distributed among these distances:
21 9 0.16
22 48 0.83
23 1 0.02
ACGTcount: A:0.38, C:0.07, G:0.08, T:0.47
Consensus pattern (22 bp):
ATTTACCATTAAGTTATGAATA
Found at i:22526318 original size:22 final size:21
Alignment explanation
Indices: 22526259--22526340 Score: 69
Period size: 22 Copynumber: 3.9 Consensus size: 21
22526249 ATTAAGTTAG
22526259 AATGATTT-TTATAAATTATT
1 AATGATTTATTATAAATTATT
** **
22526279 GGTGATTTACCACTAAATTATT
1 AATGATTTATTA-TAAATTATT
22526301 AATGATTTATTATAAAATT-TT
1 AATGATTTATTAT-AAATTATT
* *
22526322 AACTGATTTACTATTAATT
1 AA-TGATTTATTATAAATT
22526341 TACCAATGAT
Statistics
Matches: 48, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
20 6 0.12
21 10 0.21
22 32 0.67
ACGTcount: A:0.38, C:0.06, G:0.07, T:0.49
Consensus pattern (21 bp):
AATGATTTATTATAAATTATT
Found at i:22526496 original size:22 final size:22
Alignment explanation
Indices: 22526379--22526762 Score: 120
Period size: 22 Copynumber: 17.5 Consensus size: 22
22526369 TAATTAACTA
* * * *
22526379 ATTTACTACTAAATTATCACTA
1 ATTTACTATTAAATTATTAATG
* * * *
22526401 ATTTACAACTAAATTATTAGTA
1 ATTTACTATTAAATTATTAATG
** *
22526423 ATTTACTATTACTTTATTAGTG
1 ATTTACTATTAAATTATTAATG
* * *
22526445 ATTTATTGTTAAGTTATTAAT-
1 ATTTACTATTAAATTATTAATG
* *
22526466 -TTTTC-ATTAAATTATCAATG
1 ATTTACTATTAAATTATTAATG
* *
22526486 ATTTACTATTATATTTTTATAT-
1 ATTTACTATTAAATTATTA-ATG
** * * *
22526508 ATTTACTATTATTTTATCATTA
1 ATTTACTATTAAATTATTAATG
* * *
22526530 ATTTACTACTT-AATTTTTTATT
1 ATTTACTA-TTAAATTATTAATG
* ** * *
22526552 ATTTATTAGAAAATTA-TCATCA
1 ATTTACTATTAAATTATTAAT-G
* *
22526574 ATTTACTACTAAATTATTTATG
1 ATTTACTATTAAATTATTAATG
* * * ** *
22526596 ATTTATTACTAAGTTATTTTTT
1 ATTTACTATTAAATTATTAATG
22526618 ATTTA-TATTAAATTATGT-ATG
1 ATTTACTATTAAATTAT-TAATG
* * *
22526639 ATTTATTATTAAGTTATTACTG
1 ATTTACTATTAAATTATTAATG
* * * *
22526661 ATTAACTATTATATTATCT-GTT
1 ATTTACTATTAAATTAT-TAATG
* * **
22526683 ATTTACTACTAAATTCTTTGTG
1 ATTTACTATTAAATTATTAATG
* **
22526705 ATTTCTACTAATTAAACTAAAAATG
1 A-TT-TACT-ATTAAATTATTAATG
* * * *
22526730 ATATACTATTAATTTATTACTA
1 ATTTACTATTAAATTATTAATG
22526752 ATTTACTATTA
1 ATTTACTATTA
22526763 TGTTATAATT
Statistics
Matches: 265, Mismatches: 80, Indels: 34
0.70 0.21 0.09
Matches are distributed among these distances:
19 11 0.04
20 3 0.01
21 25 0.09
22 198 0.75
23 14 0.05
24 5 0.02
25 9 0.03
ACGTcount: A:0.35, C:0.08, G:0.04, T:0.52
Consensus pattern (22 bp):
ATTTACTATTAAATTATTAATG
Done.