Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25814696
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 122000 characters in sequence are not A, C, G, or T
File 114 of 126
Found at i:22526639 original size:43 final size:44
Alignment explanation
Indices: 22526574--22526656 Score: 132
Period size: 43 Copynumber: 1.9 Consensus size: 44
22526564 ATTATCATCA
*
22526574 ATTTACTACTAAATTATTTATGATTTATTACTAAGTTATTTTTT
1 ATTTACTACTAAATTATGTATGATTTATTACTAAGTTATTTTTT
* *
22526618 ATTTA-TATTAAATTATGTATGATTTATTATTAAGTTATT
1 ATTTACTACTAAATTATGTATGATTTATTACTAAGTTATT
22526657 ACTGATTAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
43 31 0.86
44 5 0.14
ACGTcount: A:0.34, C:0.04, G:0.06, T:0.57
Consensus pattern (44 bp):
ATTTACTACTAAATTATGTATGATTTATTACTAAGTTATTTTTT
Found at i:22526768 original size:22 final size:22
Alignment explanation
Indices: 22526733--22526778 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
22526723 AAAAATGATA
*
22526733 TACTATTAATTTATTACTAATT
1 TACTATTAATTTATAACTAATT
*
22526755 TACTATT-ATGTTATAATTAATT
1 TACTATTAAT-TTATAACTAATT
22526777 TA
1 TA
22526779 TTACTAAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 2 0.10
22 19 0.90
ACGTcount: A:0.37, C:0.07, G:0.02, T:0.54
Consensus pattern (22 bp):
TACTATTAATTTATAACTAATT
Found at i:22526789 original size:22 final size:23
Alignment explanation
Indices: 22526750--22526813 Score: 71
Period size: 22 Copynumber: 2.9 Consensus size: 23
22526740 AATTTATTAC
* *
22526750 TAATTTACTATTATGTTAT-AAT
1 TAATTTACTACTAAGTTATCAAT
*
22526772 TAATTTATTACTAAGTTATCAA-
1 TAATTTACTACTAAGTTATCAAT
*
22526794 TAATTAACTAC-AAGTTATCA
1 TAATTTACTACTAAGTTATCA
22526814 CTTATTTTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
21 9 0.25
22 25 0.69
23 2 0.06
ACGTcount: A:0.41, C:0.09, G:0.05, T:0.45
Consensus pattern (23 bp):
TAATTTACTACTAAGTTATCAAT
Found at i:22526987 original size:22 final size:22
Alignment explanation
Indices: 22526962--22527030 Score: 79
Period size: 22 Copynumber: 3.2 Consensus size: 22
22526952 TACTACCAAA
* *
22526962 TTATTATTTATCTACTATTAAG
1 TTATCATTAATCTACTATTAAG
*
22526984 TTATCATTAATTTACTATTAAG
1 TTATCATTAATCTACTATTAAG
*
22527006 TTATCGA-TAAT-TACTACTAAG
1 TTATC-ATTAATCTACTATTAAG
22527027 TTAT
1 TTAT
22527031 ACTGATTACA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
21 13 0.31
22 28 0.67
23 1 0.02
ACGTcount: A:0.35, C:0.10, G:0.06, T:0.49
Consensus pattern (22 bp):
TTATCATTAATCTACTATTAAG
Found at i:22528747 original size:27 final size:25
Alignment explanation
Indices: 22528717--22528779 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 25
22528707 TTTGGAAAGA
22528717 AAAT-AAAAATAAAAACTTAAAATAAAT
1 AAATAAAAAAT-AAAAC-TAAAAT-AAT
22528744 AAATCAAAAAATAAAACTAAAATAAT
1 AAAT-AAAAAATAAAACTAAAATAAT
*
22528770 AAAAAAAAAA
1 AAATAAAAAA
22528780 CATACGATCG
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
25 6 0.18
26 6 0.18
27 10 0.30
28 5 0.15
29 6 0.18
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (25 bp):
AAATAAAAAATAAAACTAAAATAAT
Found at i:22528764 original size:22 final size:21
Alignment explanation
Indices: 22528724--22528780 Score: 57
Period size: 21 Copynumber: 2.7 Consensus size: 21
22528714 AGAAAATAAA
*
22528724 AATAAAAACTTAAAA-T-AAAT
1 AATAAAAA-ATAAAACTAAAAT
22528744 AAATCAAAAAATAAAACTAAAAT
1 -AAT-AAAAAATAAAACTAAAAT
22528767 AATAAAAAA-AAAAC
1 AATAAAAAATAAAAC
22528781 ATACGATCGG
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
20 5 0.16
21 14 0.44
22 9 0.28
23 4 0.12
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.18
Consensus pattern (21 bp):
AATAAAAAATAAAACTAAAAT
Found at i:22531416 original size:14 final size:14
Alignment explanation
Indices: 22531393--22531429 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
22531383 TGTCAACATT
22531393 TTTA-TTAAAAATA
1 TTTATTTAAAAATA
22531406 TTTATTTAAAAATA
1 TTTATTTAAAAATA
*
22531420 TAT-TTTAAAA
1 TTTATTTAAAA
22531430 CTCATTAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
TTTATTTAAAAATA
Found at i:22536047 original size:33 final size:34
Alignment explanation
Indices: 22535993--22536059 Score: 109
Period size: 33 Copynumber: 2.0 Consensus size: 34
22535983 AGTGTCGCTT
* *
22535993 CAACTCCTTTTTCTTGGTACAAAAAGGCAACAAC
1 CAACTCCATTTTCTGGGTACAAAAAGGCAACAAC
22536027 CAACTCCATTTT-TGGGTACAAAAAGGCAACAAC
1 CAACTCCATTTTCTGGGTACAAAAAGGCAACAAC
22536060 TAGCACCAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 20 0.65
34 11 0.35
ACGTcount: A:0.37, C:0.25, G:0.13, T:0.24
Consensus pattern (34 bp):
CAACTCCATTTTCTGGGTACAAAAAGGCAACAAC
Found at i:22537580 original size:24 final size:24
Alignment explanation
Indices: 22537546--22537598 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
22537536 AAAATCACAC
*
22537546 AAAAT-AAT-TTTAAAAT-ATAAA
1 AAAATAAATGTTTTAAATGATAAA
*
22537567 AAAATAAATGTTTTAAATGTTAAA
1 AAAATAAATGTTTTAAATGATAAA
22537591 AAAATAAA
1 AAAATAAA
22537599 ACATAATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 5 0.19
22 3 0.11
23 7 0.26
24 12 0.44
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (24 bp):
AAAATAAATGTTTTAAATGATAAA
Found at i:22538935 original size:5 final size:5
Alignment explanation
Indices: 22538925--22538955 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
22538915 ATTTAAAATA
*
22538925 TTAAT TTAAT TTAAG TTAAT TTAAT TTAAT T
1 TTAAT TTAAT TTAAT TTAAT TTAAT TTAAT T
22538956 AATCTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (5 bp):
TTAAT
Found at i:22538943 original size:15 final size:14
Alignment explanation
Indices: 22538924--22538958 Score: 61
Period size: 15 Copynumber: 2.4 Consensus size: 14
22538914 AATTTAAAAT
22538924 ATTAATTTAATTTA
1 ATTAATTTAATTTA
22538938 AGTTAATTTAATTTA
1 A-TTAATTTAATTTA
22538953 ATTAAT
1 ATTAAT
22538959 CTATAAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 6 0.30
15 14 0.70
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (14 bp):
ATTAATTTAATTTA
Found at i:22540271 original size:30 final size:30
Alignment explanation
Indices: 22540214--22540271 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
22540204 TTTATCGTAT
* *
22540214 ATTATAATTTTTGTGAAAATAAATTTAAAA
1 ATTATAATTTTTATGAAAACAAATTTAAAA
*
22540244 ATTATAATTTTTAAT-AAAACAATTTTAA
1 ATTATAATTTTT-ATGAAAACAAATTTAA
22540272 TTTTCTCTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (30 bp):
ATTATAATTTTTATGAAAACAAATTTAAAA
Found at i:22541516 original size:22 final size:23
Alignment explanation
Indices: 22541461--22541516 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 23
22541451 TTAATATAAC
*
22541461 TATTAAAATATTAAATATATATAT
1 TATTAAAAT-TGAAATATATATAT
* *
22541485 TGTTAAAATTGAAAT-TATTTAT
1 TATTAAAATTGAAATATATATAT
*
22541507 TATTAGAATT
1 TATTAAAATT
22541517 ATTAATATTA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
22 14 0.52
23 5 0.19
24 8 0.30
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.48
Consensus pattern (23 bp):
TATTAAAATTGAAATATATATAT
Found at i:22541676 original size:15 final size:15
Alignment explanation
Indices: 22541658--22541739 Score: 53
Period size: 15 Copynumber: 5.5 Consensus size: 15
22541648 TATTTATTAA
22541658 TAATATATTATCTAT
1 TAATATATTATCTAT
*
22541673 TAATATATTGT-TAT
1 TAATATATTATCTAT
* * *
22541687 AAAATTTATTAATCAAAT
1 -TAATATATT-ATC-TAT
*
22541705 TAATA-A-TATTTAT
1 TAATATATTATCTAT
* *
22541718 TATTATATTATTTAT
1 TAATATATTATCTAT
22541733 TAATATA
1 TAATATA
22541740 ATCTTAAAAT
Statistics
Matches: 50, Mismatches: 11, Indels: 12
0.68 0.15 0.16
Matches are distributed among these distances:
13 6 0.12
14 6 0.12
15 31 0.62
16 2 0.04
17 3 0.06
18 2 0.04
ACGTcount: A:0.44, C:0.02, G:0.01, T:0.52
Consensus pattern (15 bp):
TAATATATTATCTAT
Found at i:22541756 original size:37 final size:37
Alignment explanation
Indices: 22541610--22541756 Score: 87
Period size: 37 Copynumber: 4.0 Consensus size: 37
22541600 TTATTATTCT
* *
22541610 TTATATTATTTATTAAT-AT--TTTACATTAATATT-
1 TTATATTATTTATTAATAATAATTTAAAATAATATTA
* *
22541643 TT-TATTATTTATTAATAATATATTATCTATTAAT-ATATTG
1 TTATATTATTTATTAATAATA-A-T-T-TA-AAATAATATTA
** * *
22541683 TTATAAAATTTATTAATCA-AA-TTAATAATATTTATTA
1 TTATATTATTTATTAATAATAATTTAA-AATA-ATATTA
22541720 TTATATTATTTATTAAT-ATAATCTTAAAATAATATTA
1 TTATATTATTTATTAATAATAAT-TTAAAATAATATTA
22541757 CTAGTTAGAA
Statistics
Matches: 87, Mismatches: 11, Indels: 28
0.69 0.09 0.22
Matches are distributed among these distances:
32 14 0.16
33 4 0.05
35 5 0.06
36 2 0.02
37 27 0.31
38 5 0.06
39 12 0.14
40 5 0.06
41 13 0.15
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54
Consensus pattern (37 bp):
TTATATTATTTATTAATAATAATTTAAAATAATATTA
Found at i:22546947 original size:12 final size:13
Alignment explanation
Indices: 22546917--22546964 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
22546907 GAAAAAACCA
22546917 AAAAAGAAAAAAG
1 AAAAAGAAAAAAG
22546930 AAAAAGAAAAAAG
1 AAAAAGAAAAAAG
*
22546943 -TAAAGAAATAAA-
1 AAAAAGAAA-AAAG
*
22546955 AAAAATAAAA
1 AAAAAGAAAA
22546965 GCTTATAGAG
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
12 8 0.27
13 22 0.73
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.06
Consensus pattern (13 bp):
AAAAAGAAAAAAG
Found at i:22546947 original size:18 final size:17
Alignment explanation
Indices: 22546916--22546963 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
22546906 TGAAAAAACC
*
22546916 AAAAAAGAAAAAAGAAA-
1 AAAAAA-AATAAAGAAAT
22546933 AAGAAAAAAGTAAAGAAAT
1 AA-AAAAAA-TAAAGAAAT
22546952 AAAAAAAATAAA
1 AAAAAAAATAAA
22546964 AGCTTATAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 8 0.30
18 17 0.63
19 2 0.07
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.06
Consensus pattern (17 bp):
AAAAAAAATAAAGAAAT
Found at i:22546958 original size:17 final size:18
Alignment explanation
Indices: 22546926--22546963 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
22546916 AAAAAAGAAA
*
22546926 AAAGAAAAAGAAAAAAGT
1 AAAGAAAAAGAAAAAAAT
*
22546944 AAAGAAATA-AAAAAAAT
1 AAAGAAAAAGAAAAAAAT
22546961 AAA
1 AAA
22546964 AGCTTATAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.82, C:0.00, G:0.11, T:0.08
Consensus pattern (18 bp):
AAAGAAAAAGAAAAAAAT
Found at i:22551336 original size:17 final size:18
Alignment explanation
Indices: 22551309--22551342 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
22551299 GTTTCACACT
22551309 AAAAAATTAAAAAATTTC
1 AAAAAATTAAAAAATTTC
22551327 AAAAAA-TAAAAAATTT
1 AAAAAATTAAAAAATTT
22551343 GATTGAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (18 bp):
AAAAAATTAAAAAATTTC
Found at i:22551386 original size:356 final size:356
Alignment explanation
Indices: 22550676--22551385 Score: 1280
Period size: 356 Copynumber: 2.0 Consensus size: 356
22550666 GATCCCATAA
* *
22550676 AAAAATGCGAGTCCCATATTCAAAAACAAAAAAGTGGATCTTAAGGAAAAAATTTTTGAAAATGG
1 AAAAATGCGAGTCCCATATTCAAAAACAAAAAAATGGATCTTAAGGAAAAAATTTGTGAAAATGG
* * *
22550741 ATCCTCCTCTTAAAAGGATTTATTTAAAAAATTAAAAAAATTACATGTGTCAACTTTAAAGAAAT
66 ATCCTCCTCTTAAAAAGATTTATTTAAAAAATTAAAAAAATCACATATGTCAACTTTAAAGAAAT
*
22550806 ATATTATGGATGACATGTAACGCATAATGCATATCCCTATATATACATAATTTGTCTATAAGATG
131 ATATTATGGATGACATGTAACGCATAATGCATATCCCTATATATACATAATTTATCTATAAGATG
22550871 GTTGAAGGCATATATAATTTAAAATTTAATTATGTATAAATATAATATTTATATTAAATAAAAAA
196 GTTGAAGGCATATATAATTTAAAATTTAATTATGTATAAATATAATATTTATATTAAATAAAAAA
*
22550936 ATATGGGTTTCACACTAAAAAAATTAAAAAGTTTTCAAAAAATAAAAAATTTGATTGAAAAGGCC
261 ATATGGGTTTCACACTAAAAAAATTAAAAAGATTTCAAAAAATAAAAAATTTGATTGAAAAGGCC
*
22551001 AAGATGTAAATCCCACACACAAAAAAAAAAT
326 AAGATGTAAATCCCACACAAAAAAAAAAAAT
* *
22551032 AAAAATGTGAGTCCCATATTCAAAAACAAAAAAATGGATCTTAAGGAAAATATTTGTGAAAATGG
1 AAAAATGCGAGTCCCATATTCAAAAACAAAAAAATGGATCTTAAGGAAAAAATTTGTGAAAATGG
22551097 ATCCTCCTCTTAAAAAGATTTATTTAAAAAATTAAAAAAATCACATATGTCAACTTTAAAGAAAT
66 ATCCTCCTCTTAAAAAGATTTATTTAAAAAATTAAAAAAATCACATATGTCAACTTTAAAGAAAT
* *
22551162 ATATTGTGGATGACATGTAACGCATAATGTATATCCCTATATATACATAATTTATCTATAAGATG
131 ATATTATGGATGACATGTAACGCATAATGCATATCCCTATATATACATAATTTATCTATAAGATG
*
22551227 GTTGAAGGTATATATAATTTAAAATTTAATTATGTATAAATATAATATTTATATTAAATAAAAAA
196 GTTGAAGGCATATATAATTTAAAATTTAATTATGTATAAATATAATATTTATATTAAAT-AAAAA
22551292 AATATGGGTTTCACACT-AAAAAATTAAAAA-ATTTCAAAAAATAAAAAATTTGATTGAAAAGGC
260 AATATGGGTTTCACACTAAAAAAATTAAAAAGATTTCAAAAAATAAAAAATTTGATTGAAAAGGC
22551355 CAAGATGTAAATCCCACACAAAAAAAAAAAA
325 CAAGATGTAAATCCCACACAAAAAAAAAAAA
22551386 AATATCCCAC
Statistics
Matches: 340, Mismatches: 13, Indels: 3
0.96 0.04 0.01
Matches are distributed among these distances:
355 62 0.18
356 256 0.75
357 22 0.06
ACGTcount: A:0.49, C:0.10, G:0.11, T:0.30
Consensus pattern (356 bp):
AAAAATGCGAGTCCCATATTCAAAAACAAAAAAATGGATCTTAAGGAAAAAATTTGTGAAAATGG
ATCCTCCTCTTAAAAAGATTTATTTAAAAAATTAAAAAAATCACATATGTCAACTTTAAAGAAAT
ATATTATGGATGACATGTAACGCATAATGCATATCCCTATATATACATAATTTATCTATAAGATG
GTTGAAGGCATATATAATTTAAAATTTAATTATGTATAAATATAATATTTATATTAAATAAAAAA
ATATGGGTTTCACACTAAAAAAATTAAAAAGATTTCAAAAAATAAAAAATTTGATTGAAAAGGCC
AAGATGTAAATCCCACACAAAAAAAAAAAAT
Found at i:22551773 original size:15 final size:15
Alignment explanation
Indices: 22551750--22551780 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
22551740 AATCCGCGGC
22551750 ATTTATATTATTATT
1 ATTTATATTATTATT
*
22551765 ATTTTTATTATTATT
1 ATTTATATTATTATT
22551780 A
1 A
22551781 CAACTTTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
ATTTATATTATTATT
Found at i:22553623 original size:2 final size:2
Alignment explanation
Indices: 22553618--22553644 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
22553608 TTTTCTTGCA
22553618 CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT C
22553645 CCCCCCCTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:22569286 original size:13 final size:13
Alignment explanation
Indices: 22569268--22569292 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22569258 TTAAACATGT
22569268 TAAATAATATAAC
1 TAAATAATATAAC
22569281 TAAATAATATAA
1 TAAATAATATAA
22569293 AAAGGTACAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
TAAATAATATAAC
Found at i:22570517 original size:18 final size:18
Alignment explanation
Indices: 22570490--22570524 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
22570480 ACAAACTAGC
22570490 TTTTATTTTTTA-ATTAA
1 TTTTATTTTTTATATTAA
22570507 TTTTAATTTTTTATATTA
1 TTTT-ATTTTTTATATTA
22570525 TCTTAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 8 0.50
19 4 0.25
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTATTTTTTATATTAA
Found at i:22570530 original size:18 final size:18
Alignment explanation
Indices: 22570494--22570531 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
22570484 ACTAGCTTTT
*
22570494 ATTTTTTAATTAATTTTA
1 ATTTTTTAATTAATCTTA
22570512 ATTTTTTATATT-ATCTTA
1 ATTTTTTA-ATTAATCTTA
22570530 AT
1 AT
22570532 AAAAATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (18 bp):
ATTTTTTAATTAATCTTA
Found at i:22572660 original size:21 final size:21
Alignment explanation
Indices: 22572643--22572681 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
22572633 TAATTAATTT
22572643 AAATTTATTTAATT-TTAATA
1 AAATTTATTTAATTATTAATA
*
22572663 AAATTTATTTTATTATTAA
1 AAATTTATTTAATTATTAA
22572682 AATTATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
AAATTTATTTAATTATTAATA
Found at i:22575523 original size:17 final size:16
Alignment explanation
Indices: 22575490--22575529 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 16
22575480 TTTTAATAAA
22575490 TATTTAAATAAATTTT
1 TATTTAAATAAATTTT
22575506 TATTTCAAATGAAATTTT
1 TATTT-AAAT-AAATTTT
*
22575524 GATTTA
1 TATTTA
22575530 TATTAATGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 5 0.24
17 5 0.24
18 11 0.52
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.53
Consensus pattern (16 bp):
TATTTAAATAAATTTT
Found at i:22575574 original size:30 final size:29
Alignment explanation
Indices: 22575538--22575607 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 29
22575528 TATATTAATG
22575538 GTTTATTTATATATAAATTAAAAGTTAAAA
1 GTTTATTTA-ATATAAATTAAAAGTTAAAA
* *
22575568 GTTTATTTGAATGTAAATTAAAATTTAAAA
1 GTTTATTT-AATATAAATTAAAAGTTAAAA
*
22575598 ATTTATTTAA
1 GTTTATTTAA
22575608 GTGTAATAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.06
30 33 0.92
31 1 0.03
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.46
Consensus pattern (29 bp):
GTTTATTTAATATAAATTAAAAGTTAAAA
Found at i:22575613 original size:30 final size:30
Alignment explanation
Indices: 22575551--22575632 Score: 105
Period size: 30 Copynumber: 2.8 Consensus size: 30
22575541 TATTTATATA
* *
22575551 TAAATTAAAAGTTAAAAGTTTATTTGAATG
1 TAAATTAAAATTTAAAAATTTATTTGAATG
22575581 TAAATTAAAATTTAAAAATTTATTT-AAGTG
1 TAAATTAAAATTTAAAAATTTATTTGAA-TG
* *
22575611 T-AATAAAAATATAAAAATTTAT
1 TAAATTAAAATTTAAAAATTTAT
22575633 CTAAATAAAG
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
29 21 0.45
30 26 0.55
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.40
Consensus pattern (30 bp):
TAAATTAAAATTTAAAAATTTATTTGAATG
Found at i:22575628 original size:29 final size:30
Alignment explanation
Indices: 22575563--22575632 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 30
22575553 AATTAAAAGT
* * *
22575563 TAAAAGTTTATTTGAATGTAAATTAAAATT
1 TAAAAATTTATTTGAATGTAAATAAAAATA
22575593 TAAAAATTTATTT-AAGTGT-AATAAAAATA
1 TAAAAATTTATTTGAA-TGTAAATAAAAATA
22575622 TAAAAATTTAT
1 TAAAAATTTAT
22575633 CTAAATAAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
29 21 0.58
30 15 0.42
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.41
Consensus pattern (30 bp):
TAAAAATTTATTTGAATGTAAATAAAAATA
Found at i:22586067 original size:14 final size:13
Alignment explanation
Indices: 22586021--22586067 Score: 53
Period size: 14 Copynumber: 3.6 Consensus size: 13
22586011 ATGTGTTTTA
22586021 TTTAATAATTAA-
1 TTTAATAATTAAT
22586033 -TTAGATAATTAAT
1 TTTA-ATAATTAAT
*
22586046 TTTTATAATTATAT
1 TTTAATAATTA-AT
22586060 TTTAATAA
1 TTTAATAA
22586068 AATTAATTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
11 3 0.10
12 8 0.28
13 7 0.24
14 11 0.38
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (13 bp):
TTTAATAATTAAT
Found at i:22589753 original size:2 final size:2
Alignment explanation
Indices: 22589746--22589770 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
22589736 TCATAAATAA
22589746 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
22589771 CACACAACGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:22590142 original size:16 final size:16
Alignment explanation
Indices: 22590121--22590156 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
22590111 TATAATTATC
*
22590121 AGTAAAATTTGTTGTT
1 AGTAAAATTTGTTGGT
22590137 AGT-AAATTTGTTGGT
1 AGTAAAATTTGTTGGT
22590152 AGTAA
1 AGTAA
22590157 GCATGAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (16 bp):
AGTAAAATTTGTTGGT
Found at i:22590398 original size:20 final size:19
Alignment explanation
Indices: 22590360--22590402 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
22590350 ATCAAATCAA
22590360 ATAACATCCATCAAACATCC
1 ATAACATCCATCAAACAT-C
*
22590380 ATAACATTCAT-AAAGCATC
1 ATAACATCCATCAAA-CATC
22590399 ATAA
1 ATAA
22590403 AATATCCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.49, C:0.26, G:0.02, T:0.23
Consensus pattern (19 bp):
ATAACATCCATCAAACATC
Found at i:22591302 original size:66 final size:66
Alignment explanation
Indices: 22591232--22591356 Score: 178
Period size: 66 Copynumber: 1.9 Consensus size: 66
22591222 ATATACTATT
* * * *
22591232 AAAATAATTCATCAATAATCACAATACACAACTATCATCATAATGCAAAATACGTAATATATGGT
1 AAAATAATTAATCAACAATCACAATACACAACTATCATCACAATGCAAAATACGCAATATATGGT
22591297 A
66 A
* * * *
22591298 AAAATAGTTAATCAACAATCACAATACACAATTGTCATCACAATTCAAAATACGCAATA
1 AAAATAATTAATCAACAATCACAATACACAACTATCATCACAATGCAAAATACGCAATA
22591357 GTTTTCATAT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
66 51 1.00
ACGTcount: A:0.50, C:0.18, G:0.06, T:0.26
Consensus pattern (66 bp):
AAAATAATTAATCAACAATCACAATACACAACTATCATCACAATGCAAAATACGCAATATATGGT
A
Found at i:22592125 original size:57 final size:57
Alignment explanation
Indices: 22592037--22592149 Score: 199
Period size: 57 Copynumber: 2.0 Consensus size: 57
22592027 TATTTGAAAT
* *
22592037 ATTGTTCCATGCTCGTTGAACAAGATCATCATTTGACTTAGCCCATTGACATTTTTA
1 ATTGTTCCATGCTCGTTAAACAAGATCATCATCTGACTTAGCCCATTGACATTTTTA
*
22592094 ATTGTTCTATGCTCGTTAAACAAGATCATCATCTGACTTAGCCCATTGACATTTTT
1 ATTGTTCCATGCTCGTTAAACAAGATCATCATCTGACTTAGCCCATTGACATTTTT
22592150 TCTAACATAA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.27, C:0.21, G:0.13, T:0.39
Consensus pattern (57 bp):
ATTGTTCCATGCTCGTTAAACAAGATCATCATCTGACTTAGCCCATTGACATTTTTA
Found at i:22593585 original size:120 final size:120
Alignment explanation
Indices: 22593461--22593726 Score: 390
Period size: 120 Copynumber: 2.2 Consensus size: 120
22593451 TTTACTAAAT
* *
22593461 TATGAAATATATAAA-TTACTTCAAAAAAAATATAAATCTTATTCCACATAAAACCCAATTATAA
1 TATGAAATATA-AAACATACATCAAAAAAAATATAAATCTTATTCCACATAAAACCCAATTATAA
* * * *
22593525 CATTAAATTAACATAAATAATTTTAATTTCTATAATTATTATTAAAATTTAGATAA
65 CATCAAATCAACATAAATAATTTTAATTTCTATAATTATTATTAAAATTTAAAAAA
* * * * *
22593581 TATGAAATATAAAACATCCATCAAAATAAATATAAATCTTATTCTACATCAAACTCAATTATAAC
1 TATGAAATATAAAACATACATCAAAAAAAATATAAATCTTATTCCACATAAAACCCAATTATAAC
*
22593646 CTCAAATCAACATAAATAATTTTAATTTCTATAATTATTATTAAAATTTAAAAAA
66 ATCAAATCAACATAAATAATTTTAATTTCTATAATTATTATTAAAATTTAAAAAA
* *
22593701 TATTAAATATAAAACATCCATCAAAA
1 TATGAAATATAAAACATACATCAAAA
22593727 CATATGTAAA
Statistics
Matches: 132, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
119 3 0.02
120 129 0.98
ACGTcount: A:0.52, C:0.12, G:0.01, T:0.35
Consensus pattern (120 bp):
TATGAAATATAAAACATACATCAAAAAAAATATAAATCTTATTCCACATAAAACCCAATTATAAC
ATCAAATCAACATAAATAATTTTAATTTCTATAATTATTATTAAAATTTAAAAAA
Found at i:22593749 original size:120 final size:120
Alignment explanation
Indices: 22593481--22593758 Score: 387
Period size: 120 Copynumber: 2.3 Consensus size: 120
22593471 ATAAATTACT
* * ** * * *
22593481 TCAAAAAAAATATAAATCTTATTCCACATAAAACCCAATTATAACATTAAATTAACATAAATAAT
1 TCAAAACAAATATAAATCTTAATATACATCAAACCCAATTATAACATCAAATCAACATAAATAAT
* *
22593546 TTTAATTTCTATAATTATTATTAAAATTTAGATAATATGAAATATAAAACATCCA
66 TTTAATTTCTATAATTATTATTAAAATTTAAAAAATATGAAATATAAAACATCCA
* * * * *
22593601 TCAAAATAAATATAAATCTTATTCTACATCAAACTCAATTATAACCTCAAATCAACATAAATAAT
1 TCAAAACAAATATAAATCTTAATATACATCAAACCCAATTATAACATCAAATCAACATAAATAAT
*
22593666 TTTAATTTCTATAATTATTATTAAAATTTAAAAAATATTAAATATAAAACATCCA
66 TTTAATTTCTATAATTATTATTAAAATTTAAAAAATATGAAATATAAAACATCCA
* *
22593721 TCAAAACATATGTAAA-CTTTAATATACATCAAACCCAA
1 TCAAAACAAATATAAATC-TTAATATACATCAAACCCAA
22593759 ATTAACGAAT
Statistics
Matches: 141, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
119 1 0.01
120 140 0.99
ACGTcount: A:0.51, C:0.14, G:0.01, T:0.34
Consensus pattern (120 bp):
TCAAAACAAATATAAATCTTAATATACATCAAACCCAATTATAACATCAAATCAACATAAATAAT
TTTAATTTCTATAATTATTATTAAAATTTAAAAAATATGAAATATAAAACATCCA
Found at i:22593890 original size:20 final size:20
Alignment explanation
Indices: 22593865--22593930 Score: 73
Period size: 20 Copynumber: 3.2 Consensus size: 20
22593855 TAATATTTTC
22593865 ACAAATAAAAAAAAAACTCA
1 ACAAATAAAAAAAAAACTCA
22593885 ACAAATAAAAAAAAATA-TCA
1 ACAAATAAAAAAAAA-ACTCA
* *
22593905 AC-AATACTAAAAATAAACCCA
1 ACAAATA--AAAAAAAAACTCA
22593926 ACAAA
1 ACAAA
22593931 ATTTAACAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
19 4 0.10
20 21 0.54
21 12 0.31
22 2 0.05
ACGTcount: A:0.71, C:0.17, G:0.00, T:0.12
Consensus pattern (20 bp):
ACAAATAAAAAAAAAACTCA
Found at i:22594387 original size:14 final size:15
Alignment explanation
Indices: 22594361--22594389 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
22594351 GTTAGTAATG
22594361 TGTAAATTTTTTTTT
1 TGTAAATTTTTTTTT
22594376 TGTAAATTTTTTTT
1 TGTAAATTTTTTTT
22594390 ATGAAGTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.07, T:0.72
Consensus pattern (15 bp):
TGTAAATTTTTTTTT
Found at i:22594399 original size:14 final size:15
Alignment explanation
Indices: 22594361--22594401 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
22594351 GTTAGTAATG
*
22594361 TGTAAATTTTTTTTT
1 TGTAAATTTTTTTTA
22594376 TGTAAATTTTTTTTA
1 TGTAAATTTTTTTTA
*
22594391 TG-AAGTTTTTT
1 TGTAAATTTTTT
22594402 GTCAATAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 8 0.33
15 16 0.67
ACGTcount: A:0.22, C:0.00, G:0.10, T:0.68
Consensus pattern (15 bp):
TGTAAATTTTTTTTA
Found at i:22606922 original size:33 final size:32
Alignment explanation
Indices: 22606865--22606934 Score: 88
Period size: 33 Copynumber: 2.2 Consensus size: 32
22606855 TTTGAATTTG
*
22606865 ATTATTTAATTATATAATAAATATAATAAATT
1 ATTATTCAATTATATAATAAATATAATAAATT
**
22606897 ATTATTCAATTGAT-TATATAAATATAATATTTT
1 ATTATTCAATT-ATATA-ATAAATATAATAAATT
22606930 ATTAT
1 ATTAT
22606935 AATTACAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
32 12 0.36
33 21 0.64
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (32 bp):
ATTATTCAATTATATAATAAATATAATAAATT
Found at i:22608445 original size:29 final size:30
Alignment explanation
Indices: 22608411--22608482 Score: 83
Period size: 29 Copynumber: 2.4 Consensus size: 30
22608401 TATTAATTAA
** *
22608411 TAAATTTATAATTTATATTTAACATTT-TT
1 TAAATTTATAAAATATATTAAACATTTATT
*
22608440 TAAATTCATAAAATATATTAAACATTTCATT
1 TAAATTTATAAAATATATTAAACATTT-ATT
*
22608471 AAAATTTATAAA
1 TAAATTTATAAA
22608483 TAATTTATGA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 23 0.66
31 12 0.34
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (30 bp):
TAAATTTATAAAATATATTAAACATTTATT
Found at i:22612570 original size:21 final size:21
Alignment explanation
Indices: 22612544--22612584 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
22612534 CATTAAGATA
22612544 AGTAGAT-ATCCTATTTAAAGT
1 AGTAGATGATCC-ATTTAAAGT
*
22612565 AGTAGATGTTCCATTTAAAG
1 AGTAGATGATCCATTTAAAG
22612585 AAAGTACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (21 bp):
AGTAGATGATCCATTTAAAGT
Found at i:22619844 original size:27 final size:27
Alignment explanation
Indices: 22619777--22619840 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 27
22619767 AATGATCAAA
* * *
22619777 TTTATCTAATTATTATTCTGATTTCTTT
1 TTTAT-TAATTATTATTCTGAATCCTCT
*
22619805 TTTTTTAATTATTATT-TGAATCCTCT
1 TTTATTAATTATTATTCTGAATCCTCT
22619831 TTTATTAATT
1 TTTATTAATT
22619841 TATTCCCTTC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 16 0.52
27 11 0.35
28 4 0.13
ACGTcount: A:0.23, C:0.09, G:0.03, T:0.64
Consensus pattern (27 bp):
TTTATTAATTATTATTCTGAATCCTCT
Found at i:22622502 original size:18 final size:19
Alignment explanation
Indices: 22622468--22622503 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
22622458 TAATAGCTTA
22622468 AATATTAATAATTTATATT
1 AATATTAATAATTTATATT
*
22622487 AATATT-ATATTTTATAT
1 AATATTAATAATTTATAT
22622504 AAAAATCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
AATATTAATAATTTATATT
Found at i:22626923 original size:29 final size:27
Alignment explanation
Indices: 22626864--22626932 Score: 79
Period size: 29 Copynumber: 2.5 Consensus size: 27
22626854 ATTTTTTCGT
22626864 ATTTT-TAATTTTATTTTTTAAGAAAA
1 ATTTTATAATTTTATTTTTTAAGAAAA
22626890 ATTTTATAATATTTATGTTTTTAA-AAAGA
1 ATTTTATAAT-TTTAT-TTTTTAAGAAA-A
* *
22626919 GTTTTAAAATTTTA
1 ATTTTATAATTTTA
22626933 AAATTTTTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
26 5 0.14
27 4 0.11
28 12 0.32
29 16 0.43
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (27 bp):
ATTTTATAATTTTATTTTTTAAGAAAA
Found at i:22627284 original size:33 final size:37
Alignment explanation
Indices: 22627239--22627315 Score: 99
Period size: 33 Copynumber: 2.2 Consensus size: 37
22627229 TTAAATTTTG
* *
22627239 AAAAAATAAAAAT-TTTAAAAA-TG-ATTT-TTATTT
1 AAAAAATAAAAATATTGAAAAAGTGCATTTAATATTT
*
22627272 AAAAAATTAAAATATTGAAAAAGTGCATTTAATATTT
1 AAAAAATAAAAATATTGAAAAAGTGCATTTAATATTT
22627309 AAAAAAT
1 AAAAAAT
22627316 GAGAAAATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
33 12 0.32
34 7 0.19
35 2 0.05
36 4 0.11
37 12 0.32
ACGTcount: A:0.57, C:0.01, G:0.05, T:0.36
Consensus pattern (37 bp):
AAAAAATAAAAATATTGAAAAAGTGCATTTAATATTT
Found at i:22627380 original size:22 final size:22
Alignment explanation
Indices: 22627355--22627409 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
22627345 GAATTTTTTT
22627355 AAAATTAAAATATGATTT-T-AG
1 AAAATTAAAA-ATGATTTCTAAG
*
22627376 AAAAATTCAAAAATGTTTTCTAAG
1 -AAAATT-AAAAATGATTTCTAAG
22627400 AAAATTAAAA
1 AAAATTAAAA
22627410 CATTAAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
22 16 0.55
23 11 0.38
24 2 0.07
ACGTcount: A:0.56, C:0.04, G:0.07, T:0.33
Consensus pattern (22 bp):
AAAATTAAAAATGATTTCTAAG
Found at i:22627508 original size:23 final size:24
Alignment explanation
Indices: 22627470--22627527 Score: 68
Period size: 23 Copynumber: 2.5 Consensus size: 24
22627460 ATTTGAGATT
22627470 TGATTTCTTTTAAAAAA-TAA-AATA
1 TGATTT-TTTTAAAAAAGTAAGAA-A
*
22627494 TGATTTTTTTTAAAAAGTAAGAAA
1 TGATTTTTTTAAAAAAGTAAGAAA
22627518 T-ATTTTTTTA
1 TGATTTTTTTA
22627528 TTAGTAATTG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
23 17 0.57
24 11 0.37
25 2 0.07
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (24 bp):
TGATTTTTTTAAAAAAGTAAGAAA
Found at i:22628427 original size:19 final size:20
Alignment explanation
Indices: 22628403--22628443 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
22628393 AATTGTGTTG
22628403 TTTTAAT-AAAAAAATATTT
1 TTTTAATAAAAAAAATATTT
22628422 TTTTAATAAAAAAAATATTT
1 TTTTAATAAAAAAAATATTT
22628442 TT
1 TT
22628444 AAATAATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TTTTAATAAAAAAAATATTT
Found at i:22628448 original size:19 final size:20
Alignment explanation
Indices: 22628410--22628449 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
22628400 TTGTTTTAAT
*
22628410 AAAAAAATATTTTTTTAATA
1 AAAAAAATATTTTTTAAATA
22628430 AAAAAAATA-TTTTTAAATA
1 AAAAAAATATTTTTTAAATA
22628449 A
1 A
22628450 TTAAAGTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
AAAAAAATATTTTTTAAATA
Found at i:22628522 original size:23 final size:23
Alignment explanation
Indices: 22628476--22628522 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
22628466 TCATTTGAAT
*
22628476 AATCATTTTTTTATTTCAATAAA
1 AATCATTTTTATATTTCAATAAA
*
22628499 AATCATTTTTCATGTTTCAA-AAA
1 AATCATTTTT-ATATTTCAATAAA
22628522 A
1 A
22628523 TTACAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.40, C:0.11, G:0.02, T:0.47
Consensus pattern (23 bp):
AATCATTTTTATATTTCAATAAA
Found at i:22629359 original size:16 final size:16
Alignment explanation
Indices: 22629338--22629380 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
22629328 ATTATTTTTT
*
22629338 AAATATAAATATTTAA
1 AAATATAAATATATAA
* *
22629354 AAATATCATTATATAA
1 AAATATAAATATATAA
*
22629370 ATATATAAATA
1 AAATATAAATA
22629381 AAAAATTAAA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (16 bp):
AAATATAAATATATAA
Found at i:22629635 original size:17 final size:17
Alignment explanation
Indices: 22629613--22629651 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
22629603 ATGTTATTTC
22629613 ATATTTATTAAAATATT
1 ATATTTATTAAAATATT
* * *
22629630 ATATTTCTTATAATCTT
1 ATATTTATTAAAATATT
22629647 ATATT
1 ATATT
22629652 CAAATTAAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.56
Consensus pattern (17 bp):
ATATTTATTAAAATATT
Found at i:22630353 original size:5 final size:5
Alignment explanation
Indices: 22630343--22630372 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
22630333 TCAAATTTGA
22630343 AATTT AATTT AATTT AATTT AA-TT AATTT A
1 AATTT AATTT AATTT AATTT AATTT AATTT A
22630373 TGTAATTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
AATTT
Found at i:22630361 original size:15 final size:14
Alignment explanation
Indices: 22630343--22630372 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
22630333 TCAAATTTGA
22630343 AATTTAATTTAATTT
1 AATTTAA-TTAATTT
22630358 AATTTAATTAATTT
1 AATTTAATTAATTT
22630372 A
1 A
22630373 TGTAATTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
AATTTAATTAATTT
Found at i:22630518 original size:79 final size:74
Alignment explanation
Indices: 22630409--22630557 Score: 183
Period size: 75 Copynumber: 1.9 Consensus size: 74
22630399 CATCATATAT
* *
22630409 TATCTATATATAAAAGTGTTGATTTAAAAAAATACTAAAATTGATAGACTAAAATATTTTTAATA
1 TATCTATATATAAAAGTGTTGATTT-AAAAAATACTAAAA-AGATA-AC-AAAATATTCTTAATA
22630474 AATTTTTATTTTA
62 AATTTTTATTTTA
* * * *
22630487 TATCATATATATAAAAGTG-TGAATTTCAAAAATATTAAAAAGATAACAAAATATTCTTAGTGAA
1 TATC-TATATATAAAAGTGTTG-ATTTAAAAAATACTAAAAAGATAACAAAATATTCTTAATAAA
22630551 TTTTTAT
64 TTTTTAT
22630558 ATAAAATTTA
Statistics
Matches: 63, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
75 21 0.33
76 2 0.03
77 4 0.06
78 18 0.29
79 18 0.29
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.41
Consensus pattern (74 bp):
TATCTATATATAAAAGTGTTGATTTAAAAAATACTAAAAAGATAACAAAATATTCTTAATAAATT
TTTATTTTA
Found at i:22630931 original size:27 final size:28
Alignment explanation
Indices: 22630901--22630958 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 28
22630891 ACTAAAATCA
*
22630901 TTTCATTAAAATTTCTCT-TTTATTTTT
1 TTTCATTAAAATATCTCTATTTATTTTT
* ** *
22630928 TTTCTTTATTATATCTTTATTTATTTTT
1 TTTCATTAAAATATCTCTATTTATTTTT
22630956 TTT
1 TTT
22630959 AAATTTCAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
27 13 0.52
28 12 0.48
ACGTcount: A:0.19, C:0.09, G:0.00, T:0.72
Consensus pattern (28 bp):
TTTCATTAAAATATCTCTATTTATTTTT
Found at i:22631938 original size:31 final size:30
Alignment explanation
Indices: 22631854--22631947 Score: 86
Period size: 30 Copynumber: 3.1 Consensus size: 30
22631844 TTATTTATTT
* * *
22631854 TTTTAATAT-TTTATTAT-AATCAAATAAA
1 TTTTAAAATATTTATTTTGAATCAATTAAA
*
22631882 TTTTAAAATTTTTATTTTGAATCAATTAAA
1 TTTTAAAATATTTATTTTGAATCAATTAAA
* *
22631912 TTATT-AAATATTTATTTTTACTTCAATTAAAA
1 TT-TTAAAATATTTATTTTGA-ATCAATT-AAA
22631944 TTTT
1 TTTT
22631948 GATTAAATGA
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
28 8 0.15
29 7 0.13
30 25 0.45
31 10 0.18
32 5 0.09
ACGTcount: A:0.40, C:0.04, G:0.01, T:0.54
Consensus pattern (30 bp):
TTTTAAAATATTTATTTTGAATCAATTAAA
Found at i:22635569 original size:3 final size:3
Alignment explanation
Indices: 22635554--22635590 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
22635544 TGTTTTCTAC
* *
22635554 TTA TTA CTA TTA TTA TTA TTA TTA TTA TTG TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
22635591 CTGACCTTAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:22643136 original size:3 final size:3
Alignment explanation
Indices: 22643128--22643168 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
22643118 TCTTGTCCAG
22643128 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
22643169 TTTTAGATAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:22643745 original size:33 final size:32
Alignment explanation
Indices: 22643688--22643752 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 32
22643678 TAATAGATTG
* *
22643688 AATATAAAATTTGATAATTTATATATTTATAT
1 AATATAAAATTTAATAATTCATATATTTATAT
22643720 AATATAAAATATTAATAATTCATATATTTATAT
1 AATATAAAAT-TTAATAATTCATATATTTATAT
22643753 CGTATTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 10 0.33
33 20 0.67
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (32 bp):
AATATAAAATTTAATAATTCATATATTTATAT
Found at i:22648517 original size:7 final size:7
Alignment explanation
Indices: 22648498--22648531 Score: 59
Period size: 7 Copynumber: 4.7 Consensus size: 7
22648488 CAACCAACAC
22648498 CAATGATT
1 CAATGA-T
22648506 CAATGAT
1 CAATGAT
22648513 CAATGAT
1 CAATGAT
22648520 CAATGAT
1 CAATGAT
22648527 CAATG
1 CAATG
22648532 TAAAGCATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 20 0.77
8 6 0.23
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.29
Consensus pattern (7 bp):
CAATGAT
Found at i:22648892 original size:2 final size:2
Alignment explanation
Indices: 22648885--22648921 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
22648875 TTACCAGGTG
22648885 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
22648922 GAGAAAAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:22649054 original size:21 final size:21
Alignment explanation
Indices: 22649014--22649054 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
22649004 ATTCAATATG
**
22649014 GAAAGAAAATCAAAGGAAAGA
1 GAAAGAAAATCAAAAAAAAGA
*
22649035 GAAAGAAAATGAAAAAAAAG
1 GAAAGAAAATCAAAAAAAAG
22649055 GCAGGTTTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.71, C:0.02, G:0.22, T:0.05
Consensus pattern (21 bp):
GAAAGAAAATCAAAAAAAAGA
Found at i:22650818 original size:255 final size:255
Alignment explanation
Indices: 22650364--22650857 Score: 846
Period size: 255 Copynumber: 1.9 Consensus size: 255
22650354 GATCAAAAGA
* * * *
22650364 GGCAGCTGAACTAGTTTTTCTTTGAAAGAATAAGAACGTCTTTATTATGGTATATACAAAACTCT
1 GGCAGCTGAACTAGTCTTTCTTTGAAAGAATAAGAACATCTTCACTATGGTATATACAAAACTCT
*
22650429 ATAAGCCATTTACCACTACAATTCTTTGGTAGGCTGCCGTCGTAAAAGCTTACAAGAAAACTTCA
66 ATAAGCCATTTACCACTACAATTCTTTGGTAGGCTGCCGTCGCAAAAGCTTACAAGAAAACTTCA
* *
22650494 AGCATCAAGCCCTATGCACCTAATCCTAGAATGATATCTGTTTAAAAGATCCAACCAACTCGTGT
131 AGCATCAAGCCCTATGAACCTAATCCTAGAATGATATCTGTTTAAAAGATCCAACCAACTCGAGT
22650559 TTATACACTTCAAACAAGTTTATGTTTTGGAACAATCAGAAACGATCAAAAGAGGCTGCC
196 TTATACACTTCAAACAAGTTTATGTTTTGGAACAATCAGAAACGATCAAAAGAGGCTGCC
22650619 GGCAGCTGAACTAGTCTTTCTTTGAAAGAATAAGAACATCTTCACTATGGTATATACAAAACTCT
1 GGCAGCTGAACTAGTCTTTCTTTGAAAGAATAAGAACATCTTCACTATGGTATATACAAAACTCT
* * *
22650684 ATAAGCCATTTACGACTTCAATTCTTTGGTAGGCTGCCGTCGCAAAAGCTTGCAAGAAAACTTCA
66 ATAAGCCATTTACCACTACAATTCTTTGGTAGGCTGCCGTCGCAAAAGCTTACAAGAAAACTTCA
* * *
22650749 AGCATCAAGCCCTAT-AAGCCTAATCCTAGAATGATATCTGTTTAAAAGATCCAATCACCTTGAG
131 AGCATCAAGCCCTATGAA-CCTAATCCTAGAATGATATCTGTTTAAAAGATCCAACCAACTCGAG
*
22650813 TTTATACACTTCAAACATGTTTATGTTTTGGAACAATCAGAAACG
195 TTTATACACTTCAAACAAGTTTATGTTTTGGAACAATCAGAAACG
22650858 GCAGGGATCA
Statistics
Matches: 224, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
254 1 0.00
255 223 1.00
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (255 bp):
GGCAGCTGAACTAGTCTTTCTTTGAAAGAATAAGAACATCTTCACTATGGTATATACAAAACTCT
ATAAGCCATTTACCACTACAATTCTTTGGTAGGCTGCCGTCGCAAAAGCTTACAAGAAAACTTCA
AGCATCAAGCCCTATGAACCTAATCCTAGAATGATATCTGTTTAAAAGATCCAACCAACTCGAGT
TTATACACTTCAAACAAGTTTATGTTTTGGAACAATCAGAAACGATCAAAAGAGGCTGCC
Found at i:22652870 original size:84 final size:84
Alignment explanation
Indices: 22652742--22652917 Score: 282
Period size: 84 Copynumber: 2.1 Consensus size: 84
22652732 AACAAGGCTT
* *
22652742 TTAAAATTGAGTCAGAAATTAAATATCAAAATTAATCAGTTTAGATTAGATTAATATTGTGATAA
1 TTAAAATTGAGTCAGAAATTAAATATCAAAATTAATCAATTTAGATTAGAGTAATATTGTGATAA
22652807 TAACAACATATTACAGAGC
66 TAACAACATATTACAGAGC
* * * *
22652826 TTAAAATTGAGTCAGAAATT-AATGATCAGAATTAATCAATTTAGATTAGGGTAATTTTGTGATG
1 TTAAAATTGAGTCAGAAATTAAAT-ATCAAAATTAATCAATTTAGATTAGAGTAATATTGTGATA
22652890 ATAACAACATATTACAGAGC
65 ATAACAACATATTACAGAGC
22652910 TTAAAATT
1 TTAAAATT
22652918 TTAAAATTCC
Statistics
Matches: 85, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
83 3 0.04
84 82 0.96
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.34
Consensus pattern (84 bp):
TTAAAATTGAGTCAGAAATTAAATATCAAAATTAATCAATTTAGATTAGAGTAATATTGTGATAA
TAACAACATATTACAGAGC
Found at i:22653356 original size:26 final size:26
Alignment explanation
Indices: 22653320--22653376 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
22653310 CGAAACATAC
* *
22653320 TTGGGTTTTTTGGGTAATGGGCCGGT
1 TTGGGTCTTTTGGGTAATGGGCAGGT
*
22653346 TTGGGTCTTTTGGGTAATGGGTAGGT
1 TTGGGTCTTTTGGGTAATGGGCAGGT
22653372 TTGGG
1 TTGGG
22653377 CCATTTATGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.09, C:0.05, G:0.44, T:0.42
Consensus pattern (26 bp):
TTGGGTCTTTTGGGTAATGGGCAGGT
Found at i:22658361 original size:21 final size:22
Alignment explanation
Indices: 22658319--22658361 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
22658309 ACTTTTCTTG
*
22658319 CTTAAAATTAAACAAAATACTC
1 CTTAAAATTAAACAAAACACTC
22658341 CTTAAAA-TAAA-AACAACACTC
1 CTTAAAATTAAACAA-AACACTC
22658362 TTTGTGAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 2 0.11
21 10 0.53
22 7 0.37
ACGTcount: A:0.56, C:0.21, G:0.00, T:0.23
Consensus pattern (22 bp):
CTTAAAATTAAACAAAACACTC
Found at i:22659013 original size:15 final size:14
Alignment explanation
Indices: 22658993--22659024 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
22658983 AATTTTAAGG
22658993 TTTGGATTTTAGGAT
1 TTTGGATTTT-GGAT
22659008 TTTGGATTTTGGAT
1 TTTGGATTTTGGAT
22659022 TTT
1 TTT
22659025 AGGGTTTGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.16, C:0.00, G:0.25, T:0.59
Consensus pattern (14 bp):
TTTGGATTTTGGAT
Found at i:22659016 original size:7 final size:7
Alignment explanation
Indices: 22658993--22659024 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
22658983 AATTTTAAGG
22658993 TTTGGAT
1 TTTGGAT
22659000 TTTAGGAT
1 TTT-GGAT
22659008 TTTGGAT
1 TTTGGAT
22659015 TTTGGAT
1 TTTGGAT
22659022 TTT
1 TTT
22659025 AGGGTTTGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 17 0.71
8 7 0.29
ACGTcount: A:0.16, C:0.00, G:0.25, T:0.59
Consensus pattern (7 bp):
TTTGGAT
Found at i:22659037 original size:22 final size:22
Alignment explanation
Indices: 22658993--22659038 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
22658983 AATTTTAAGG
*
22658993 TTTGGATTTTAGGATTTTGGAT
1 TTTGGATTTTAGGAGTTTGGAT
22659015 TTTGGATTTTAGG-GTTTGAGAT
1 TTTGGATTTTAGGAGTTTG-GAT
22659037 TT
1 TT
22659039 GAAGTTTTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.17, C:0.00, G:0.28, T:0.54
Consensus pattern (22 bp):
TTTGGATTTTAGGAGTTTGGAT
Found at i:22661189 original size:35 final size:34
Alignment explanation
Indices: 22661145--22661255 Score: 104
Period size: 35 Copynumber: 3.3 Consensus size: 34
22661135 AAAAGACTAG
*
22661145 GATTAAACTACGAGTCAGAGAATAACAATAATCGA
1 GATTAAACTACGAGTCAGAGAATAA-AACAATCGA
* * *
22661180 GATTAAACTACGA-T-TGA-AATAAAGAGACT-GA
1 GATTAAACTACGAGTCAGAGAATAAA-ACAATCGA
* * *
22661211 GATTAAACCACGAGTCAGAGAATAATAGCAATCAA
1 GATTAAACTACGAGTCAGAGAATAA-AACAATCGA
22661246 GATTAAACTA
1 GATTAAACTA
22661256 TAATTTTAAA
Statistics
Matches: 60, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
31 15 0.25
32 9 0.15
33 4 0.07
34 8 0.13
35 24 0.40
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.21
Consensus pattern (34 bp):
GATTAAACTACGAGTCAGAGAATAAAACAATCGA
Found at i:22661215 original size:66 final size:66
Alignment explanation
Indices: 22661130--22661255 Score: 182
Period size: 66 Copynumber: 1.9 Consensus size: 66
22661120 ACAAGTCAAA
* * *
22661130 AAATAAAAAGACTAGGATTAAACTACGAGTCAGAGAATAACAATAATCGAGATTAAACTACGATT
1 AAATAAAAAGACTAGGATTAAACCACGAGTCAGAGAATAACAACAATCAAGATTAAACTACGATT
22661195 G
66 G
* * *
22661196 AAATAAAGAGACT-GAGATTAAACCACGAGTCAGAGAATAATAGCAATCAAGATTAAACTA
1 AAATAAAAAGACTAG-GATTAAACCACGAGTCAGAGAATAACAACAATCAAGATTAAACTA
22661256 TAATTTTAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
65 1 0.02
66 52 0.98
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.20
Consensus pattern (66 bp):
AAATAAAAAGACTAGGATTAAACCACGAGTCAGAGAATAACAACAATCAAGATTAAACTACGATT
G
Found at i:22661233 original size:135 final size:134
Alignment explanation
Indices: 22660970--22661235 Score: 319
Period size: 135 Copynumber: 2.0 Consensus size: 134
22660960 ATTTGGATTG
* *
22660970 AACTTGGATTGCATCACAAGTCAAAAAATAAAGAGACTGAAACTAAACCACGAGTCAGAGAATAA
1 AACTTGGATTGAATCACAAGTCAAAAAATAAAAAGACTGAAACTAAACCACGAGTCAGAGAATAA
* * * * * *
22661035 CAATGATCGGTATTAAATCGTGACTTGGAAGTAAAGAGATCGGGATTGAACCGCGAGTTAGAATA
66 CAATAATCGGTATTAAATCG-GACTTGGAAATAAAGAGATCGAGATTAAACCACGAGTGAGAATA
22661100 ACGTC
130 ACGTC
* * *
22661105 AACTTGGATTGAATCACAAGTCAAAAAATAAAAAGACT-AGGATTAAACTACGAGTCAGAGAATA
1 AACTTGGATTGAATCACAAGTCAAAAAATAAAAAGACTGA-AACTAAACCACGAGTCAGAGAATA
22661169 ACAATAATCGAG-ATTAAACTAC-GA-TT-GAAATAAAGAGA-CTGAGATTAAACCACGAGTCAG
65 ACAATAATCG-GTATTAAA-T-CGGACTTGGAAATAAAGAGATC-GAGATTAAACCACGAGT--G
22661229 AGAATAA
124 AGAATAA
22661236 TAGCAATCAA
Statistics
Matches: 113, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
132 1 0.01
133 25 0.22
134 3 0.03
135 81 0.72
136 2 0.02
137 1 0.01
ACGTcount: A:0.45, C:0.14, G:0.20, T:0.20
Consensus pattern (134 bp):
AACTTGGATTGAATCACAAGTCAAAAAATAAAAAGACTGAAACTAAACCACGAGTCAGAGAATAA
CAATAATCGGTATTAAATCGGACTTGGAAATAAAGAGATCGAGATTAAACCACGAGTGAGAATAA
CGTC
Found at i:22661353 original size:36 final size:34
Alignment explanation
Indices: 22661290--22661357 Score: 91
Period size: 36 Copynumber: 1.9 Consensus size: 34
22661280 ATTGAACTGC
*
22661290 AAGTCAAAGAATAAAGAGATTAGGATTAAATCTT
1 AAGTCAAAGAAAAAAGAGATTAGGATTAAATCTT
* *
22661324 AAGTTAAAGAAAAAATGAGGATTGGGATTAAATC
1 AAGTCAAAGAAAAAA-GA-GATTAGGATTAAATC
22661358 ATGACTTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 13 0.45
35 2 0.07
36 14 0.48
ACGTcount: A:0.50, C:0.04, G:0.21, T:0.25
Consensus pattern (34 bp):
AAGTCAAAGAAAAAAGAGATTAGGATTAAATCTT
Found at i:22661367 original size:36 final size:34
Alignment explanation
Indices: 22661295--22661385 Score: 85
Period size: 36 Copynumber: 2.6 Consensus size: 34
22661285 ACTGCAAGTC
* * *
22661295 AAAGAATAAAGAGATTAGGATTAAATCTTAAGTT
1 AAAGAAAAAAGAGATTAGGATTAAATCATAACTT
* *
22661329 AAAGAAAAAATGAGGATTGGGATTAAATCATGACTT
1 AAAGAAAAAA-GA-GATTAGGATTAAATCATAACTT
** *
22661365 AAA-AGTAAAGAGATCAGGATT
1 AAAGAAAAAAGAGATTAGGATT
22661386 GAACCACGAG
Statistics
Matches: 46, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
33 8 0.17
34 11 0.24
35 6 0.13
36 21 0.46
ACGTcount: A:0.49, C:0.04, G:0.21, T:0.25
Consensus pattern (34 bp):
AAAGAAAAAAGAGATTAGGATTAAATCATAACTT
Found at i:22672573 original size:20 final size:20
Alignment explanation
Indices: 22672548--22672586 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
22672538 AACTATTTCT
22672548 CACATCATCATCTATTATAG
1 CACATCATCATCTATTATAG
22672568 CACATCATCATCTATTATA
1 CACATCATCATCTATTATA
22672587 TATTAGTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.26, G:0.03, T:0.36
Consensus pattern (20 bp):
CACATCATCATCTATTATAG
Found at i:22674134 original size:23 final size:23
Alignment explanation
Indices: 22674100--22674158 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 23
22674090 TCATACTAAA
*
22674100 TTTAGGGTTTTCATAATTTTGAAT
1 TTTAGGG-TTTCAGAATTTTGAAT
* *
22674124 TTTAGGGTTTC-GGATTTTGGAT
1 TTTAGGGTTTCAGAATTTTGAAT
22674146 TTTAGGGTTTCAG
1 TTTAGGGTTTCAG
22674159 TTTTAGGGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
22 19 0.61
23 5 0.16
24 7 0.23
ACGTcount: A:0.19, C:0.05, G:0.25, T:0.51
Consensus pattern (23 bp):
TTTAGGGTTTCAGAATTTTGAAT
Found at i:22674164 original size:14 final size:14
Alignment explanation
Indices: 22674145--22674197 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
22674135 GGATTTTGGA
22674145 TTTTAGGGTTTCAG
1 TTTTAGGGTTTCAG
*
22674159 TTTTAGGGTTTGAG
1 TTTTAGGGTTTCAG
* * *
22674173 GTTT-GAAGTTTTAG
1 TTTTAG-GGTTTCAG
22674187 TTTTAGGGTTT
1 TTTTAGGGTTT
22674198 AAAAGATTTA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
13 1 0.03
14 29 0.94
15 1 0.03
ACGTcount: A:0.15, C:0.02, G:0.30, T:0.53
Consensus pattern (14 bp):
TTTTAGGGTTTCAG
Found at i:22675257 original size:11 final size:11
Alignment explanation
Indices: 22675243--22675272 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
22675233 GTTTTTTGTG
22675243 TTCTTTTTTTT
1 TTCTTTTTTTT
22675254 TTCTTTTTTTT
1 TTCTTTTTTTT
*
22675265 TTGTTTTT
1 TTCTTTTT
22675273 CTATTTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.07, G:0.03, T:0.90
Consensus pattern (11 bp):
TTCTTTTTTTT
Found at i:22675826 original size:21 final size:21
Alignment explanation
Indices: 22675802--22675843 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
22675792 AACCAATATT
*
22675802 ATTATTAATATTATTATTAAA
1 ATTATTAATATTAATATTAAA
*
22675823 ATTATTACTATTAATATTAAA
1 ATTATTAATATTAATATTAAA
22675844 CTAGAACTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
ATTATTAATATTAATATTAAA
Found at i:22675841 original size:12 final size:12
Alignment explanation
Indices: 22675796--22675829 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
22675786 TAATTAAACC
22675796 AATATTATTATT
1 AATATTATTATT
22675808 AATATTATTATT
1 AATATTATTATT
*
22675820 AAAATTATTA
1 AATATTATTA
22675830 CTATTAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
AATATTATTATT
Found at i:22677094 original size:21 final size:22
Alignment explanation
Indices: 22677070--22677110 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
22677060 ATTTTTTTTT
22677070 AATTTTTAATTTATT-TTTAAA
1 AATTTTTAATTTATTATTTAAA
*
22677091 AATTTTTATTTTATTATTTA
1 AATTTTTAATTTATTATTTA
22677111 TTTAATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (22 bp):
AATTTTTAATTTATTATTTAAA
Found at i:22677109 original size:28 final size:29
Alignment explanation
Indices: 22677065--22677122 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 29
22677055 AAGTCATTTT
22677065 TTTTTAATTTTTAATTTATTT-TTAAAAA
1 TTTTTAATTTTTAATTTATTTATTAAAAA
*
22677093 TTTTT-ATTTTATTATTTATTTAATTAAAAA
1 TTTTTAATTTT-TAATTTATTT-ATTAAAAA
22677123 AATTACGTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 5 0.19
28 14 0.54
30 7 0.27
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (29 bp):
TTTTTAATTTTTAATTTATTTATTAAAAA
Found at i:22677632 original size:3 final size:3
Alignment explanation
Indices: 22677624--22677653 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
22677614 GTTTGTTAAG
22677624 TAA TAA TAA TAA TAA TAA TAA TAAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA TA
22677654 CAAGAGGGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:22686134 original size:17 final size:17
Alignment explanation
Indices: 22686112--22686151 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
22686102 TTAAAATTAT
22686112 AATAATTTAATCATCAA
1 AATAATTTAATCATCAA
* * *
22686129 AATAATTTTATTATTAA
1 AATAATTTAATCATCAA
22686146 AATAAT
1 AATAAT
22686152 CTTATCAGAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (17 bp):
AATAATTTAATCATCAA
Found at i:22694259 original size:17 final size:17
Alignment explanation
Indices: 22694237--22694276 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
22694227 TTAAAATTAT
22694237 AATAATTTAATCATCAA
1 AATAATTTAATCATCAA
* * *
22694254 AATAATTTTATTATTAA
1 AATAATTTAATCATCAA
22694271 AATAAT
1 AATAAT
22694277 CTTGTCCATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (17 bp):
AATAATTTAATCATCAA
Found at i:22705606 original size:35 final size:35
Alignment explanation
Indices: 22705567--22705702 Score: 161
Period size: 35 Copynumber: 3.9 Consensus size: 35
22705557 TAAAATTAGT
* * * *
22705567 ACTAGTAGCGTTTTACATTCTAGAAGAATACAAGA
1 ACTAGTAGTGTTTTACATCCTAGGAGAATACAAGC
**
22705602 ACTAGTAGTACTTTACATCCTAGGAGAATACAAGC
1 ACTAGTAGTGTTTTACATCCTAGGAGAATACAAGC
* *
22705637 ACTAGTAGTGTTTTACATCCCAGGAGAATACGAGC
1 ACTAGTAGTGTTTTACATCCTAGGAGAATACAAGC
*
22705672 ACTAG-A-TATTTTACAAT-CTAGGAGAATACAA
1 ACTAGTAGTGTTTTAC-ATCCTAGGAGAATACAA
22705703 CACGATTTAC
Statistics
Matches: 87, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
33 19 0.22
34 3 0.03
35 65 0.75
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.27
Consensus pattern (35 bp):
ACTAGTAGTGTTTTACATCCTAGGAGAATACAAGC
Found at i:22708511 original size:43 final size:43
Alignment explanation
Indices: 22708462--22708562 Score: 132
Period size: 43 Copynumber: 2.3 Consensus size: 43
22708452 ATTTTTGATA
*
22708462 ATCTAGTAAATTCAGTATCCCTTAACGTATTTTTCATAATATTT
1 ATCTAGTAAATTCAGTATCCCTTAACATATTTTTCATAAT-TTT
* * * *
22708506 -TCTAGTAAATTCAGTATCCTTTGATATATTTTTTATAATTTT
1 ATCTAGTAAATTCAGTATCCCTTAACATATTTTTCATAATTTT
*
22708548 ATCTAATAAATTCAG
1 ATCTAGTAAATTCAG
22708563 GTCATATTTG
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
42 3 0.06
43 47 0.94
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.48
Consensus pattern (43 bp):
ATCTAGTAAATTCAGTATCCCTTAACATATTTTTCATAATTTT
Found at i:22708575 original size:44 final size:43
Alignment explanation
Indices: 22708489--22708578 Score: 112
Period size: 43 Copynumber: 2.1 Consensus size: 43
22708479 TCCCTTAACG
* *
22708489 TATTTTTCATAATATTTTCTAGTAAATTCAGTATCCTTTGATA
1 TATTTTTCATAATATTTTCTAATAAATTCAGTATCATTTGATA
*
22708532 TATTTTTTATAAT-TTTATCTAATAAATTCAGGTCAT-ATTTGATA
1 TATTTTTCATAATATTT-TCTAATAAATTCA-GT-ATCATTTGATA
22708576 TAT
1 TAT
22708579 AAGATTATGA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
42 3 0.07
43 24 0.59
44 12 0.29
45 2 0.05
ACGTcount: A:0.32, C:0.09, G:0.07, T:0.52
Consensus pattern (43 bp):
TATTTTTCATAATATTTTCTAATAAATTCAGTATCATTTGATA
Found at i:22708660 original size:2 final size:2
Alignment explanation
Indices: 22708655--22708679 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
22708645 TGTGTGTTTG
22708655 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
22708680 AGGATTAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:22710450 original size:33 final size:33
Alignment explanation
Indices: 22710408--22710470 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
22710398 AAAGCTTAAA
*
22710408 TTAAAATTAAGAATTTTTCTTTGAATGTTTTGT
1 TTAAAATTAAGAATATTTCTTTGAATGTTTTGT
22710441 TTAAAATTAAGAATATTTCTTTGAATGTTT
1 TTAAAATTAAGAATATTTCTTTGAATGTTT
22710471 GTCTATTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.33, C:0.03, G:0.11, T:0.52
Consensus pattern (33 bp):
TTAAAATTAAGAATATTTCTTTGAATGTTTTGT
Found at i:22713954 original size:58 final size:59
Alignment explanation
Indices: 22713856--22713989 Score: 189
Period size: 59 Copynumber: 2.3 Consensus size: 59
22713846 TTTCTTCAAA
* *
22713856 AAAAATCTTTTTTTAAAAATTTTATTTTCAAGAAAAATTGATAATTTTAACTTGTCCTT
1 AAAAATCTTTTTTTGAAAATTTTATTTTCAAGAAAAATTGATAATTTCAACTTGTCCTT
* * * * *
22713915 GAAAATGTTTTTTTGAAAATTTTATTTT-AAGAAAAATTGATACTTTCAACTTTTTCTT
1 AAAAATCTTTTTTTGAAAATTTTATTTTCAAGAAAAATTGATAATTTCAACTTGTCCTT
22713973 AAAAATACTTTTTTTGA
1 AAAAAT-CTTTTTTTGA
22713990 TGATACTTTC
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
58 31 0.48
59 34 0.52
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.49
Consensus pattern (59 bp):
AAAAATCTTTTTTTGAAAATTTTATTTTCAAGAAAAATTGATAATTTCAACTTGTCCTT
Found at i:22713985 original size:59 final size:60
Alignment explanation
Indices: 22713823--22713989 Score: 207
Period size: 58 Copynumber: 2.8 Consensus size: 60
22713813 ATGCTTTATA
* *
22713823 CAAG-AAAATTGATACTTTCAAC-TTTTCTTCAAAAAAAATCTTTTTTTAAAAATTTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTTCTT--AAAAATA-CTTTTTTTGAAAATTTTATTTT
* * * * * *
22713884 CAAGAAAAATTGATAATTTTAACTTGTCCTTGAAAAT-GTTTTTTTGAAAATTTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTTCTTAAAAATACTTTTTTTGAAAATTTTATTTT
22713943 -AAGAAAAATTGATACTTTCAACTTTTTCTTAAAAATACTTTTTTTGA
1 CAAGAAAAATTGATACTTTCAACTTTTTCTTAAAAATACTTTTTTTGA
22713990 TGATACTTTC
Statistics
Matches: 89, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
58 31 0.35
59 29 0.33
61 8 0.09
62 16 0.18
63 5 0.06
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.46
Consensus pattern (60 bp):
CAAGAAAAATTGATACTTTCAACTTTTTCTTAAAAATACTTTTTTTGAAAATTTTATTTT
Found at i:22714010 original size:96 final size:98
Alignment explanation
Indices: 22713894--22714085 Score: 291
Period size: 98 Copynumber: 2.0 Consensus size: 98
22713884 CAAGAAAAAT
* *
22713894 TGATAATTTTAACTTGTCCTTGAAAATGTTTTTTTGAAAA-TTTTATTTT-AA-GAAAAATTGAT
1 TGATAATTTCAACTTGTCCTTGAAAATATTTTTTTGAAAATTTTTATTTTCAATG-AAAATTGAT
*
22713956 ACTTTCAACTTTTTCTTAAAAATACTTTTTTTGA
65 ACTTTCAACTTTTCCTTAAAAATACTTTTTTTGA
* *
22713990 TGATACTTTCAACTTTTCCTTGAAAATATTTTTTTGAAAATTTTTATTTTCAATGAAAATTGATA
1 TGATAATTTCAACTTGTCCTTGAAAATATTTTTTTGAAAATTTTTATTTTCAATGAAAATTGATA
**
22714055 CTTTCAACTTTTCCTTAAAAATGTTTTTTTT
66 CTTTCAACTTTTCCTTAAAAATACTTTTTTT
22714086 TTTTGAAAAT
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
96 36 0.42
97 9 0.10
98 40 0.47
99 1 0.01
ACGTcount: A:0.32, C:0.10, G:0.07, T:0.51
Consensus pattern (98 bp):
TGATAATTTCAACTTGTCCTTGAAAATATTTTTTTGAAAATTTTTATTTTCAATGAAAATTGATA
CTTTCAACTTTTCCTTAAAAATACTTTTTTTGA
Found at i:22714022 original size:37 final size:38
Alignment explanation
Indices: 22713952--22714026 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
22713942 TAAGAAAAAT
*
22713952 TGATACTTTCAACTTTTTCTTAAAAATACTTTTTTTGA
1 TGATACTTTCAACTTTTCCTTAAAAATACTTTTTTTGA
*
22713990 TGATACTTTCAACTTTTCCTTGAAAATA-TTTTTTTGA
1 TGATACTTTCAACTTTTCCTTAAAAATACTTTTTTTGA
22714027 AAATTTTTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
37 9 0.26
38 26 0.74
ACGTcount: A:0.28, C:0.13, G:0.07, T:0.52
Consensus pattern (38 bp):
TGATACTTTCAACTTTTCCTTAAAAATACTTTTTTTGA
Found at i:22714177 original size:60 final size:60
Alignment explanation
Indices: 22713990--22714163 Score: 253
Period size: 65 Copynumber: 2.8 Consensus size: 60
22713980 CTTTTTTTGA
* *
22713990 TGATACTTTCAACTTTTCCTTGAAAATATTTTTTTGAAAATTTTTATTTTCAATG-AAAAT
1 TGATACTTTCAACTTTTCCTTAAAAATGTTTTTTTGAAAATTTTTATTTTCAA-GAAAAAT
22714050 TGATACTTTCAACTTTTCCTTAAAAATGTTTTTTTTTTTTGAAAATTTTTATTTTCAAGAAAAAT
1 TGATACTTTCAACTTTTCCTTAAAAATG-----TTTTTTTGAAAATTTTTATTTTCAAGAAAAAT
*
22714115 TGATACTTTTAACTTTTCCTTAAAAATGTTTTTTTGAAAA-TTTTATTTT
1 TGATACTTTCAACTTTTCCTTAAAAATGTTTTTTTGAAAATTTTTATTTT
22714164 AGGAAAATCA
Statistics
Matches: 105, Mismatches: 3, Indels: 13
0.87 0.02 0.11
Matches are distributed among these distances:
59 9 0.09
60 38 0.36
64 1 0.01
65 57 0.54
ACGTcount: A:0.32, C:0.09, G:0.06, T:0.53
Consensus pattern (60 bp):
TGATACTTTCAACTTTTCCTTAAAAATGTTTTTTTGAAAATTTTTATTTTCAAGAAAAAT
Found at i:22715312 original size:9 final size:8
Alignment explanation
Indices: 22715296--22715320 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
22715286 ACCCATTCAC
22715296 TCTTTTTT
1 TCTTTTTT
22715304 TCTTTTTT
1 TCTTTTTT
22715312 TCTTTTTT
1 TCTTTTTT
22715320 T
1 T
22715321 AAATCACACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (8 bp):
TCTTTTTT
Found at i:22715438 original size:44 final size:43
Alignment explanation
Indices: 22715388--22715755 Score: 310
Period size: 44 Copynumber: 8.4 Consensus size: 43
22715378 ATTTCTAAAG
* * * *
22715388 AATAAACAAAACTTC-TCTAAACAGAGGCTTAACAACTTTAAAAA
1 AATAAACAAAGC-TCATCTAAACAGAGGCTCAACGACTTT-GAAA
* *
22715432 AATAAACAAAGCTCATCTAATCAGAGGCTTAACGACTTTGAAA
1 AATAAACAAAGCTCATCTAAACAGAGGCTCAACGACTTTGAAA
* * *
22715475 AATAAACAAGGCTCGTCTAAATAGAGGCTCAATC-ACTTTTGAAA
1 AATAAACAAAGCTCATCTAAACAGAGGCTCAA-CGAC-TTTGAAA
* * * *
22715519 AATAAATAAAGCTCTTCTAAATAGAAGCTCAACGACTTTGAAA
1 AATAAACAAAGCTCATCTAAACAGAGGCTCAACGACTTTGAAA
* * * * * * *
22715562 AGTAAATAAAACTCCTCTAAATAGAGGCTCAATGACTTTTAAAA
1 AATAAACAAAGCTCATCTAAACAGAGGCTCAACGAC-TTTGAAA
* ** * * *
22715606 AATAAACAAGGCTTTTCTAATCAAAGGCTCAACGACTTTCAAA
1 AATAAACAAAGCTCATCTAAACAGAGGCTCAACGACTTTGAAA
* * * * *
22715649 AATAAAC-AAGCCTCTTTTAAATAGAAGCTCAATGACTTTTGAAA
1 AATAAACAAAG-CTCATCTAAACAGAGGCTCAACGAC-TTTGAAA
* * * *
22715693 AATAAATAAGGCTCCTCTAAACAGAAGCTCAACGACTTTTGAAA
1 AATAAACAAAGCTCATCTAAACAGAGGCTCAACGAC-TTTGAAA
* *
22715737 AATAAACAAGGCTCCTCTA
1 AATAAACAAAGCTCATCTA
22715756 CAATCATATC
Statistics
Matches: 270, Mismatches: 46, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
42 2 0.01
43 104 0.39
44 162 0.60
45 2 0.01
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.25
Consensus pattern (43 bp):
AATAAACAAAGCTCATCTAAACAGAGGCTCAACGACTTTGAAA
Found at i:22715538 original size:87 final size:87
Alignment explanation
Indices: 22715388--22715755 Score: 409
Period size: 87 Copynumber: 4.2 Consensus size: 87
22715378 ATTTCTAAAG
** * * * * *
22715388 AATAAACAAAACTTCTCTAAACAGAGGCTTAA-CAACTTTAAAAAAATAAACAAAGCTCATCTAA
1 AATAAACAAGGCTCCTCTAAATAGAGGCTCAATC-ACTTTTAAAAAATAAACAAAGCTCTTCTAA
* *
22715452 TCAGAGGCTTAACGACTTTGAAA
65 TCAGAAGCTCAACGACTTTGAAA
* * *
22715475 AATAAACAAGGCTCGTCTAAATAGAGGCTCAATCACTTTTGAAAAATAAATAAAGCTCTTCTAAA
1 AATAAACAAGGCTCCTCTAAATAGAGGCTCAATCACTTTTAAAAAATAAACAAAGCTCTTCT-AA
22715540 T-AGAAGCTCAACGACTTTGAAA
65 TCAGAAGCTCAACGACTTTGAAA
* * ** * * *
22715562 AGTAAATAAAACTCCTCTAAATAGAGGCTCAATGACTTTTAAAAAATAAACAAGGCTTTTCTAAT
1 AATAAACAAGGCTCCTCTAAATAGAGGCTCAATCACTTTTAAAAAATAAACAAAGCTCTTCTAAT
*
22715627 CA-AAGGCTCAACGACTTTCAAA
66 CAGAA-GCTCAACGACTTTGAAA
* * * * * * * * * *
22715649 AATAAACAAGCCTCTTTTAAATAGAAGCTCAATGACTTTTGAAAAATAAATAAGGCTCCTCTAAA
1 AATAAACAAGGCTCCTCTAAATAGAGGCTCAATCACTTTTAAAAAATAAACAAAGCTCTTCTAAT
22715714 CAGAAGCTCAACGACTTTTGAAA
66 CAGAAGCTCAACGAC-TTTGAAA
22715737 AATAAACAAGGCTCCTCTA
1 AATAAACAAGGCTCCTCTA
22715756 CAATCATATC
Statistics
Matches: 236, Mismatches: 39, Indels: 11
0.83 0.14 0.04
Matches are distributed among these distances:
86 5 0.02
87 203 0.86
88 28 0.12
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.25
Consensus pattern (87 bp):
AATAAACAAGGCTCCTCTAAATAGAGGCTCAATCACTTTTAAAAAATAAACAAAGCTCTTCTAAT
CAGAAGCTCAACGACTTTGAAA
Found at i:22715613 original size:131 final size:132
Alignment explanation
Indices: 22715429--22715761 Score: 408
Period size: 131 Copynumber: 2.5 Consensus size: 132
22715419 ACAACTTTAA
* * * * * *
22715429 AAAAATAAACAAAGCTCATCTAATCAGAGGCTTAACGAC-TTTGAAAAATAAACAAGGCTCGTCT
1 AAAAATAAATAAAACTCCTCTAAACAGAGGCTCAACGACTTTTGAAAAATAAACAAGGCTCCTCT
* *
22715493 AAAT-AGAGGCTCAATC-ACTTTTGAAAAATAAATAAAG-CTCTTCTAAATAGAAGCTCAACGAC
66 AAATCAAAGGCTCAA-CGAC-TTTCAAAAATAAA-AAAGCCTCTTCTAAATAGAAGCTCAACGAC
22715555 -TTTG
128 TTTTG
* * * * **
22715559 AAAAGTAAATAAAACTCCTCTAAATAGAGGCTCAATGACTTTTAAAAAATAAACAAGGCTTTTCT
1 AAAAATAAATAAAACTCCTCTAAACAGAGGCTCAACGACTTTTGAAAAATAAACAAGGCTCCTCT
* * *
22715624 -AATCAAAGGCTCAACGACTTTCAAAAATAAACAAGCCTCTTTTAAATAGAAGCTCAATGACTTT
66 AAATCAAAGGCTCAACGACTTTCAAAAATAAAAAAGCCTCTTCTAAATAGAAGCTCAACGACTTT
22715688 TG
131 TG
** *
22715690 AAAAATAAATAAGGCTCCTCTAAACAGAAGCTCAACGACTTTTGAAAAATAAACAAGGCTCCTCT
1 AAAAATAAATAAAACTCCTCTAAACAGAGGCTCAACGACTTTTGAAAAATAAACAAGGCTCCTCT
22715755 ACAATCA
66 A-AATCA
22715762 TATCCAGAGA
Statistics
Matches: 171, Mismatches: 25, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
129 3 0.02
130 70 0.41
131 93 0.54
133 5 0.03
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (132 bp):
AAAAATAAATAAAACTCCTCTAAACAGAGGCTCAACGACTTTTGAAAAATAAACAAGGCTCCTCT
AAATCAAAGGCTCAACGACTTTCAAAAATAAAAAAGCCTCTTCTAAATAGAAGCTCAACGACTTT
TG
Found at i:22715692 original size:174 final size:175
Alignment explanation
Indices: 22715388--22715755 Score: 513
Period size: 174 Copynumber: 2.1 Consensus size: 175
22715378 ATTTCTAAAG
* *
22715388 AATAAACAAAACTTCTCTAAACAGAGGCTTAACAACTTTAAAAAAATAAACAAAGCTCATCTAAT
1 AATAAACAAAACTCCTCTAAACAGAGGCTCAACAACTTTAAAAAAATAAACAAAGCTCATCTAAT
* * * * *
22715453 CAGAGGCTTAACGACTTTGAAAAATAAACAAGGCTCGTCTAAATAGAGGCTCAATCACTTTTGAA
66 CAAAGGCTCAACGACTTTCAAAAATAAACAAGCCTCGTCTAAATAGAAGCTCAATCACTTTTGAA
* *
22715518 AAATAAATAAAGCTCTTCTAAATAGAAGCTCAACGAC-TTTGAAA
131 AAATAAATAAAGCTCCTCTAAACAGAAGCTCAACGACTTTTGAAA
* * * ** * * **
22715562 AGTAAATAAAACTCCTCTAAATAGAGGCTCAATGACTTTTAAAAAATAAACAAGGCTTTTCTAAT
1 AATAAACAAAACTCCTCTAAACAGAGGCTCAACAACTTTAAAAAAATAAACAAAGCTCATCTAAT
* * *
22715627 CAAAGGCTCAACGACTTTCAAAAATAAACAAGCCTCTTTTAAATAGAAGCTCAATGACTTTTGAA
66 CAAAGGCTCAACGACTTTCAAAAATAAACAAGCCTCGTCTAAATAGAAGCTCAATCACTTTTGAA
*
22715692 AAATAAATAAGGCTCCTCTAAACAGAAGCTCAACGACTTTTGAAA
131 AAATAAATAAAGCTCCTCTAAACAGAAGCTCAACGACTTTTGAAA
**
22715737 AATAAACAAGGCTCCTCTA
1 AATAAACAAAACTCCTCTA
22715756 CAATCATATC
Statistics
Matches: 167, Mismatches: 26, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
174 145 0.87
175 22 0.13
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.25
Consensus pattern (175 bp):
AATAAACAAAACTCCTCTAAACAGAGGCTCAACAACTTTAAAAAAATAAACAAAGCTCATCTAAT
CAAAGGCTCAACGACTTTCAAAAATAAACAAGCCTCGTCTAAATAGAAGCTCAATCACTTTTGAA
AAATAAATAAAGCTCCTCTAAACAGAAGCTCAACGACTTTTGAAA
Found at i:22716151 original size:12 final size:12
Alignment explanation
Indices: 22716132--22716161 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
22716122 CCTTTAATCT
22716132 TCAAAGACCAAG
1 TCAAAGACCAAG
*
22716144 TTAAAGACCAAG
1 TCAAAGACCAAG
22716156 TCAAAG
1 TCAAAG
22716162 CTTTTTTCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.20, G:0.17, T:0.13
Consensus pattern (12 bp):
TCAAAGACCAAG
Found at i:22716799 original size:9 final size:9
Alignment explanation
Indices: 22716785--22716831 Score: 69
Period size: 9 Copynumber: 5.3 Consensus size: 9
22716775 TTGAGTCATC
22716785 TTTTTTTAT
1 TTTTTTTAT
22716794 TTTTTTTA-
1 TTTTTTTAT
22716802 TTTTTTTAT
1 TTTTTTTAT
*
22716811 TTTTTTCAT
1 TTTTTTTAT
*
22716820 TTTTTTTCT
1 TTTTTTTAT
22716829 TTT
1 TTT
22716832 CAAGCATAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
8 8 0.24
9 26 0.76
ACGTcount: A:0.09, C:0.04, G:0.00, T:0.87
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:22716831 original size:15 final size:16
Alignment explanation
Indices: 22716786--22716833 Score: 53
Period size: 17 Copynumber: 3.0 Consensus size: 16
22716776 TGAGTCATCT
* *
22716786 TTTTTTATTTTTTTTA
1 TTTTTTATTCTTTTCA
*
22716802 TTTTTTTATTTTTTTCA
1 -TTTTTTATTCTTTTCA
22716819 TTTTTT-TTCTTTTCA
1 TTTTTTATTCTTTTCA
22716834 AGCATAGTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 8 0.28
16 6 0.21
17 15 0.52
ACGTcount: A:0.10, C:0.06, G:0.00, T:0.83
Consensus pattern (16 bp):
TTTTTTATTCTTTTCA
Found at i:22716831 original size:17 final size:17
Alignment explanation
Indices: 22716785--22716825 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
22716775 TTGAGTCATC
*
22716785 TTTTTTTATTTTTTTTA
1 TTTTTTTATTTTTTTCA
22716802 TTTTTTTATTTTTTTCA
1 TTTTTTTATTTTTTTCA
22716819 TTTTTTT
1 TTTTTTT
22716826 TCTTTTCAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.10, C:0.02, G:0.00, T:0.88
Consensus pattern (17 bp):
TTTTTTTATTTTTTTCA
Found at i:22719141 original size:16 final size:16
Alignment explanation
Indices: 22719120--22719163 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
22719110 TTTTTATTTA
22719120 TATATATTTATATAAT
1 TATATATTTATATAAT
* *
22719136 TATATATTTAAAAAAT
1 TATATATTTATATAAT
*
22719152 AATAT-TTTATAT
1 TATATATTTATAT
22719164 TTTTAAAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
15 5 0.22
16 18 0.78
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TATATATTTATATAAT
Found at i:22719174 original size:22 final size:23
Alignment explanation
Indices: 22719135--22719183 Score: 82
Period size: 22 Copynumber: 2.2 Consensus size: 23
22719125 ATTTATATAA
22719135 TTATATATTTAAAAAATAATATT
1 TTATATATTTAAAAAATAATATT
*
22719158 TTATAT-TTTTAAAAATAATATT
1 TTATATATTTAAAAAATAATATT
22719180 TTAT
1 TTAT
22719184 TAATTTCAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 19 0.76
23 6 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
TTATATATTTAAAAAATAATATT
Found at i:22724544 original size:15 final size:15
Alignment explanation
Indices: 22724523--22724557 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
22724513 TTATTTTGTT
22724523 AAATGTAATGAATGA
1 AAATGTAATGAATGA
*
22724538 GAATGTAATGAATGA
1 AAATGTAATGAATGA
22724553 AAATG
1 AAATG
22724558 CATGCATGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.23, T:0.26
Consensus pattern (15 bp):
AAATGTAATGAATGA
Found at i:22727927 original size:59 final size:60
Alignment explanation
Indices: 22727797--22727913 Score: 202
Period size: 60 Copynumber: 2.0 Consensus size: 60
22727787 GCTTTTATAC
* *
22727797 AAGAAAAATTGATACTTTCAAGTTTTCCTTGAAAATATTTTTTTGAAAATTTTTATTTTT
1 AAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTGAAAATTTTTATTTTT
22727857 AAGAAAAATTGATACTTTCAACTTTT-CTTAAAAATATTTTTTTGAAAA-TTTTATTTT
1 AAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTGAAAATTTTTATTTT
22727914 AGGAAAATCA
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
58 9 0.16
59 21 0.38
60 25 0.45
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.50
Consensus pattern (60 bp):
AAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTGAAAATTTTTATTTTT
Found at i:22727999 original size:3 final size:3
Alignment explanation
Indices: 22727991--22728016 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
22727981 AATAGGTAGA
22727991 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
22728017 ATGAAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:22729719 original size:9 final size:9
Alignment explanation
Indices: 22729705--22729732 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
22729695 AATAAAAATG
22729705 TATTAAACA
1 TATTAAACA
22729714 TATTAAACA
1 TATTAAACA
22729723 TATTAAACA
1 TATTAAACA
22729732 T
1 T
22729733 GTATCCGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.36
Consensus pattern (9 bp):
TATTAAACA
Found at i:22735692 original size:6 final size:6
Alignment explanation
Indices: 22735681--22735722 Score: 57
Period size: 6 Copynumber: 6.5 Consensus size: 6
22735671 TAGGGGGTCG
22735681 TTTGTT TTTGTT TTCTGTT TCTTGTT TTTGTT TTTAGTT TTT
1 TTTGTT TTTGTT TT-TGTT T-TTGTT TTTGTT TTT-GTT TTT
22735723 TTGAAATTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
6 16 0.48
7 16 0.48
8 1 0.03
ACGTcount: A:0.02, C:0.05, G:0.14, T:0.79
Consensus pattern (6 bp):
TTTGTT
Found at i:22735997 original size:18 final size:18
Alignment explanation
Indices: 22735974--22736425 Score: 148
Period size: 18 Copynumber: 24.9 Consensus size: 18
22735964 ATTAATAAAC
22735974 AATATATTAATTAATATT
1 AATATATTAATTAATATT
22735992 AATATATTTATTATTAATA-T
1 AATATA-TTA--ATTAATATT
*
22736012 AATATATT-ATT--CATT
1 AATATATTAATTAATATT
* *
22736027 AATATATTATATCATATTAAT
1 AATATATTA-AT--TAATATT
* *
22736048 AATATATTAATAAATACT
1 AATATATTAATTAATATT
* * *
22736066 -ATTTATTATATAAATAAT
1 AATATATTA-ATTAATATT
* * *
22736084 ATTACATTAATAAATAATGT
1 AATATATTAATTAAT-AT-T
* *
22736104 ATTATATT-ATCAATA-T
1 AATATATTAATTAATATT
*
22736120 AATATATGATATTAATA-T
1 AATATATTA-ATTAATATT
*
22736138 ATATAATATTAGTTTAA-A-T
1 A-AT-ATATTA-ATTAATATT
22736157 ATATATATTATATATATATATT
1 A-ATATATTA-AT-TA-ATATT
*
22736179 AAATATAATAATTAATA-T
1 -AATATATTAATTAATATT
*
22736197 -ATATAATAA-TAATATT
1 AATATATTAATTAATATT
22736213 AATAATATT-A-TAATA-T
1 AAT-ATATTAATTAATATT
22736229 -AT-TATTAATTATAATATAT
1 AATATATTAA-T-TAATAT-T
22736248 ATATTATATTATATTAATATT
1 A-A-TATATTA-ATTAATATT
* * *
22736269 AATATACTGATAAATATT
1 AATATATTAATTAATATT
* *
22736287 -AT-TATTAACAATATTTATT
1 AATATATT-A-ATTA-ATATT
*
22736306 AATATATAATAATTAATAAT
1 AATATAT--TAATTAATATT
**
22736326 -ATATATT-ATTTTTATT
1 AATATATTAATTAATATT
* *
22736342 AATATAATAA-TATTTATT
1 AATATATTAATTA-ATATT
* *
22736360 AATATATTAATAAATAAT
1 AATATATTAATTAATATT
*
22736378 ACTATATTAA-TAA-A-T
1 AATATATTAATTAATATT
*
22736393 AATATATTAATAAATATT
1 AATATATTAATTAATATT
*
22736411 ATTATATT-ATTAATA
1 AATATATTAATTAATA
22736426 AAAAAATAGA
Statistics
Matches: 333, Mismatches: 50, Indels: 103
0.69 0.10 0.21
Matches are distributed among these distances:
13 4 0.01
14 2 0.01
15 26 0.08
16 33 0.10
17 41 0.12
18 90 0.27
19 47 0.14
20 35 0.11
21 30 0.09
22 16 0.05
23 8 0.02
24 1 0.00
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.48
Consensus pattern (18 bp):
AATATATTAATTAATATT
Found at i:22735998 original size:33 final size:33
Alignment explanation
Indices: 22735923--22736425 Score: 165
Period size: 33 Copynumber: 15.0 Consensus size: 33
22735913 TGATGATACA
* * *
22735923 ATTATTATATTAATAAAATAATATTTTTATT-AT
1 ATTAATATATTAAT-AAATAATATATTAATTAAT
*
22735956 A-TAATTATATTAATAAACAATATATTAATTAAT
1 ATTAA-TATATTAATAAATAATATATTAATTAAT
22735989 ATTAATATATTTATTATTAATATAATATATTATTCATTAAT
1 ATTAATATA-TTA--A-TAA-ATAATATATTA---ATTAAT
* * * *
22736030 A-TATTATATCATATTAATAATATATTAATAAAT
1 ATTAATATATTA-ATAAATAATATATTAATTAAT
* * *
22736063 ACT-ATTTATTATATAAATAATATTACATTAATAAAT
1 ATTAATATATTA-ATAAATAATA-T--ATTAATTAAT
* *
22736099 AATGTATTATATT-ATCAATATAATATATGATATTAAT
1 -AT-TAATATATTAAT-AA-ATAATATATTA-ATTAAT
*
22736136 A-TATATAATATTAGTTTAAATATATATATTATATATATAT
1 ATTA-AT-ATATTA--ATAAATA-ATATATTA-AT-TA-AT
*
22736176 ATTAA-ATA-TAATAATTAATATATATAATAATAAT
1 ATTAATATATTAATAAATAATATAT-TAAT--TAAT
*
22736210 ATTAATA-A-T-AT-TATAATATATT-ATTAAT
1 ATTAATATATTAATAAATAATATATTAATTAAT
22736238 -TATAATATA-T-AT--AT--TATATTATATTAAT
1 AT-TAATATATTAATAAATAATATATTA-ATTAAT
* * *
22736266 ATTAATATACTGATAAAT-AT-TATT-ATTAAC
1 ATTAATATATTAATAAATAATATATTAATTAAT
* * *
22736296 AAT-ATTTATTAATATATAATA-ATTAA-TAAT
1 ATTAATATATTAATAAATAATATATTAATTAAT
* * *
22736326 ATATATTATTTTTATTAATATAATA-A-T-ATT--T
1 AT-TAATA-TATTAATAA-ATAATATATTAATTAAT
22736357 ATTAATATATTAATAAATAATACTA-T-ATTAAT
1 ATTAATATATTAATAAATAATA-TATTAATTAAT
*
22736389 AAATAATATATTAATAAATATTATTATATT-ATTAAT
1 -ATTAATATATTAATAAATA--A-TATATTAATTAAT
22736425 A
1 A
22736426 AAAAAATAGA
Statistics
Matches: 368, Mismatches: 42, Indels: 118
0.70 0.08 0.22
Matches are distributed among these distances:
26 6 0.02
27 1 0.00
28 30 0.08
29 23 0.06
30 29 0.08
31 6 0.02
32 32 0.09
33 67 0.18
34 34 0.09
35 16 0.04
36 40 0.11
37 18 0.05
38 31 0.08
39 16 0.04
40 10 0.03
41 9 0.02
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.48
Consensus pattern (33 bp):
ATTAATATATTAATAAATAATATATTAATTAAT
Found at i:22736006 original size:25 final size:25
Alignment explanation
Indices: 22735923--22736016 Score: 75
Period size: 25 Copynumber: 3.6 Consensus size: 25
22735913 TGATGATACA
* *
22735923 ATTATTATATTAATAAAATAATATTTTT
1 ATTATTA-ATTAAT--ATTAATATATTT
***
22735951 ATTATATAATT-ATATTAATA-AACA
1 ATTAT-TAATTAATATTAATATATTT
22735975 ATATATTAATTAATATTAATATATTT
1 AT-TATTAATTAATATTAATATATTT
22736001 ATTATTAATATAATAT
1 ATTATTAAT-TAATAT
22736017 ATTATTCATT
Statistics
Matches: 53, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
24 7 0.13
25 25 0.47
26 9 0.17
27 2 0.04
28 8 0.15
29 2 0.04
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (25 bp):
ATTATTAATTAATATTAATATATTT
Found at i:22736008 original size:15 final size:15
Alignment explanation
Indices: 22735988--22736074 Score: 59
Period size: 17 Copynumber: 5.2 Consensus size: 15
22735978 TATTAATTAA
22735988 TATTAATATATTTAT
1 TATTAATATATTTAT
22736003 TATTAATATAATATATTAT
1 TATT-A-AT-ATAT-TTAT
22736022 TCATTAATATATTATAT
1 T-ATTAATATATT-TAT
*
22736039 CATATTAATA-ATATAT
1 --TATTAATATATTTAT
*
22736055 TAATAAATACTATTTAT
1 T-ATTAATA-TATTTAT
22736072 TAT
1 TAT
22736075 ATAAATAATA
Statistics
Matches: 58, Mismatches: 3, Indels: 21
0.71 0.04 0.26
Matches are distributed among these distances:
14 1 0.02
15 10 0.17
16 7 0.12
17 17 0.29
18 13 0.22
19 7 0.12
20 3 0.05
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTAATATATTTAT
Found at i:22736179 original size:72 final size:72
Alignment explanation
Indices: 22735987--22736417 Score: 210
Period size: 69 Copynumber: 6.2 Consensus size: 72
22735977 ATATTAATTA
* * * *
22735987 ATATTAATATAT-TTATTATTA-ATATAATATA-T-TATTCAT-TA-ATATATTATATCAT-AT-
1 ATATTAATATATACTAATATTATATA-AATATATTATATTAATATATATATATTATATTATAATA
22736044 TAATA-AT
65 TAATATAT
* * * * *
22736051 ATATTAATAAATACTATTTATTATATAAATAATATTACATTAATAAATAATGTATTATATTATCA
1 ATATTAATATATACTA-ATATTATATAAAT-ATATTATATTAATATAT-ATATATTATATTAT-A
22736116 ATATAATATAT
62 ATATAATATAT
* *
22736127 GATATTAATATATA-TAATATTAGTTTAAATATA-TATATT-ATATATATATATTA-AATATAAT
1 -ATATTAATATATACTAATATTA-TATAAATATATTATATTAATATATATATATTATATTATAAT
22736188 AATTAATATAT
64 -A-TAATATAT
* * * *
22736199 ATAATAATA-ATATTAATAATAT-TATAATATA-T-TATTAAT-TATA-ATATATATATTATATT
1 ATATTAATATATACTAATATTATATA-AATATATTATATTAATATATATATAT-TATATTATAAT
22736258 AT-AT-TA-
64 ATAATATAT
*
22736264 ATATTAATATACTGA-TAAATATTATTATTAACA-ATATT-TATTAATATATA-ATAATTA-ATA
1 ATATTAATATA-T-ACT-AATATTA-TA-TAA-ATATATTATATTAATATATATAT-ATTATATT
* *
22736324 AT-ATATATTATTT
59 ATAATATAATATAT
* * * *
22736337 TTATTAATATA-A-TAATATT-TATTAATATATTA-ATAAATA-ATACTATATTA-ATAAATAAT
1 ATATTAATATATACTAATATTATATAAATATATTATATTAATATATA-TATATTATAT-TATAAT
* *
22736396 ATATTAATAA
64 ATAAT-ATAT
*
22736406 ATATTATTATAT
1 ATATTAATATAT
22736418 TATTAATAAA
Statistics
Matches: 292, Mismatches: 31, Indels: 82
0.72 0.08 0.20
Matches are distributed among these distances:
64 11 0.04
65 14 0.05
66 31 0.11
67 17 0.06
68 20 0.07
69 36 0.12
70 32 0.11
71 36 0.12
72 36 0.12
73 17 0.06
74 7 0.02
75 13 0.04
76 10 0.03
77 12 0.04
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.48
Consensus pattern (72 bp):
ATATTAATATATACTAATATTATATAAATATATTATATTAATATATATATATTATATTATAATAT
AATATAT
Done.