Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25814696
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 122000 characters in sequence are not A, C, G, or T
File 120 of 126
Found at i:23709337 original size:19 final size:19
Alignment explanation
Indices: 23709313--23709354 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
23709303 TTTTAATGTG
*
23709313 AATCATATTTAATCATATT
1 AATCATATATAATCATATT
**
23709332 AATCATATATAATTGTATT
1 AATCATATATAATCATATT
23709351 AATC
1 AATC
23709355 GTATCGTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (19 bp):
AATCATATATAATCATATT
Found at i:23720657 original size:24 final size:23
Alignment explanation
Indices: 23720630--23720678 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
23720620 AGCTTATTGT
23720630 AACCATATAAAATACTTAGATATA
1 AACCATA-AAAATACTTAGATATA
* * *
23720654 AACCATAGAATTACTTTGATATA
1 AACCATAAAAATACTTAGATATA
23720677 AA
1 AA
23720679 ATTTGAAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 15 0.68
24 7 0.32
ACGTcount: A:0.51, C:0.12, G:0.06, T:0.31
Consensus pattern (23 bp):
AACCATAAAAATACTTAGATATA
Found at i:23721879 original size:16 final size:16
Alignment explanation
Indices: 23721858--23721891 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
23721848 TGGCAAATTC
23721858 TCTGAACACTTCTCTA
1 TCTGAACACTTCTCTA
23721874 TCTGAACACTTCTCTA
1 TCTGAACACTTCTCTA
23721890 TC
1 TC
23721892 ATCTTTCTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.24, C:0.32, G:0.06, T:0.38
Consensus pattern (16 bp):
TCTGAACACTTCTCTA
Found at i:23727509 original size:14 final size:15
Alignment explanation
Indices: 23727477--23727517 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
23727467 GGTTAATCGT
23727477 AAATTAAATTATATA
1 AAATTAAATTATATA
*
23727492 AAATTAAATTA-ATC
1 AAATTAAATTATATA
*
23727506 AAATTATATTAT
1 AAATTAAATTAT
23727518 TTTATTTTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (15 bp):
AAATTAAATTATATA
Found at i:23727852 original size:17 final size:17
Alignment explanation
Indices: 23727832--23727865 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
23727822 TTTTTTAATC
23727832 AAATTAATTAAAAATTA
1 AAATTAATTAAAAATTA
**
23727849 AAATTTTTTAAAAATTA
1 AAATTAATTAAAAATTA
23727866 TTTTTGATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
AAATTAATTAAAAATTA
Found at i:23734081 original size:21 final size:22
Alignment explanation
Indices: 23734046--23734093 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 22
23734036 AATATAATTT
*
23734046 AAAAT-TTTAATAAAAATTATA
1 AAAATATTTAATAAAAATTAAA
23734067 AAAATATTTAA-AAAAATTAAA
1 AAAATATTTAATAAAAATTAAA
23734088 AAAATA
1 AAAATA
23734094 ATATATTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 20 0.80
22 5 0.20
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (22 bp):
AAAATATTTAATAAAAATTAAA
Found at i:23734087 original size:19 final size:19
Alignment explanation
Indices: 23734041--23734089 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 19
23734031 AAAAAAATAT
*
23734041 AATTTAAAATTTTAATAAA
1 AATTAAAAATTTTAATAAA
23734060 AATTATAAAAATATTTAA-AAA
1 AA-T-TAAAAAT-TTTAATAAA
23734081 AATTAAAAA
1 AATTAAAAA
23734090 AATAATATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
19 8 0.31
20 2 0.08
21 11 0.42
22 5 0.19
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
AATTAAAAATTTTAATAAA
Found at i:23734184 original size:20 final size:19
Alignment explanation
Indices: 23734133--23734187 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
23734123 ATTATAACAC
23734133 ATAAT-TTTTATATAAAAT
1 ATAATATTTTATATAAAAT
**
23734151 ATAATATAAATATATAAATAT
1 ATAATAT-TTTATATAAA-AT
*
23734172 TTAATATTTTATATAA
1 ATAATATTTTATATAA
23734188 TATAAATACT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
18 5 0.17
19 1 0.03
20 15 0.52
21 8 0.28
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
ATAATATTTTATATAAAAT
Found at i:23734737 original size:13 final size:13
Alignment explanation
Indices: 23734719--23734743 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23734709 TTTATCAATT
23734719 TTTTAATTTTTAA
1 TTTTAATTTTTAA
23734732 TTTTAATTTTTA
1 TTTTAATTTTTA
23734744 TATATTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTTAATTTTTAA
Found at i:23734789 original size:16 final size:17
Alignment explanation
Indices: 23734768--23734816 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
23734758 AAGATTTTAA
23734768 TATATAAAAATAA-ATT
1 TATATAAAAATAATATT
23734784 TATATAAAAA-AATTATT
1 TATATAAAAATAA-TATT
*
23734801 TTTATAAAAATTAATA
1 TATATAAAAA-TAATA
23734817 AAAATATATA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
15 2 0.07
16 10 0.36
17 12 0.43
18 2 0.07
19 2 0.07
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TATATAAAAATAATATT
Found at i:23735424 original size:23 final size:23
Alignment explanation
Indices: 23735394--23735443 Score: 68
Period size: 22 Copynumber: 2.2 Consensus size: 23
23735384 TTTGAAAATT
*
23735394 AAAT-TAATCAAAATTTTAATA-A
1 AAATATAAT-AAAATTTAAATATA
23735416 AAATATAATAAAATTTAAATATA
1 AAATATAATAAAATTTAAATATA
23735439 AAATA
1 AAATA
23735444 AAAACTATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
22 15 0.60
23 10 0.40
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (23 bp):
AAATATAATAAAATTTAAATATA
Found at i:23735444 original size:21 final size:22
Alignment explanation
Indices: 23735389--23735444 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
23735379 TTTGATTTGA
*
23735389 AAAT-TAAATTAATCAAAATTT
1 AAATATAAAATAATCAAAATTT
* *
23735410 TAATAAAAATATAAT-AAAATTT
1 AAATATAAA-ATAATCAAAATTT
23735432 AAATATAAAATAA
1 AAATATAAAATAA
23735445 AAACTATATG
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
21 7 0.25
22 17 0.61
23 4 0.14
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (22 bp):
AAATATAAAATAATCAAAATTT
Found at i:23736195 original size:30 final size:30
Alignment explanation
Indices: 23736161--23736234 Score: 94
Period size: 30 Copynumber: 2.4 Consensus size: 30
23736151 AATAATTTAT
*
23736161 GTTAAAAGTTTATTTAAATAAAAAATAAAA
1 GTTAAAAATTTATTTAAATAAAAAATAAAA
* *
23736191 GTTAAAAATTTATTTAAATATAAATTAAAA
1 GTTAAAAATTTATTTAAATAAAAAATAAAA
*
23736221 ATTAATTAAATTTA
1 GTTAA--AAATTTA
23736235 AAAATGTATT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
30 31 0.82
32 7 0.18
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (30 bp):
GTTAAAAATTTATTTAAATAAAAAATAAAA
Found at i:23736209 original size:23 final size:22
Alignment explanation
Indices: 23736183--23736236 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 22
23736173 TTTAAATAAA
*
23736183 AAATA-AAAGTTAAAAATTTATTT
1 AAATATAAA-TTAAAAAT-TAATT
23736206 AAATATAAATTAAAAATTAATT
1 AAATATAAATTAAAAATTAATT
*
23736228 AAATTTAAA
1 AAATATAAA
23736237 AATGTATTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 12 0.43
23 13 0.46
24 3 0.11
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (22 bp):
AAATATAAATTAAAAATTAATT
Found at i:23736229 original size:22 final size:24
Alignment explanation
Indices: 23736183--23736236 Score: 69
Period size: 22 Copynumber: 2.4 Consensus size: 24
23736173 TTTAAATAAA
*
23736183 AAATA-AAAGTTAAAAATTTATTT
1 AAATATAAAGTTAAAAATTTAATT
23736206 AAATATAAA-TTAAAAA-TTAATT
1 AAATATAAAGTTAAAAATTTAATT
*
23736228 AAATTTAAA
1 AAATATAAA
23736237 AATGTATTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 13 0.46
23 12 0.43
24 3 0.11
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (24 bp):
AAATATAAAGTTAAAAATTTAATT
Found at i:23740567 original size:80 final size:80
Alignment explanation
Indices: 23740432--23740592 Score: 286
Period size: 80 Copynumber: 2.0 Consensus size: 80
23740422 CGAACATAAT
*
23740432 AGGAAGGTCACTGGGATATAAAAGGGTTCACACCATCTCCGCCTTGTGAGGCACCTTTTGTAGGA
1 AGGAAGGTCACTGGGATATAAAAGGGTTCACACCATCTCCGCCTTGTGAGACACCTTTTGTAGGA
*
23740497 CAAAACCGTGAGGCC
66 CAAAACCATGAGGCC
*
23740512 AGGAAGGTCACTGGGGTATAAAAGGGTTCACACCATCTCCGCCTTGTGAGACACCTTTTGTAGGA
1 AGGAAGGTCACTGGGATATAAAAGGGTTCACACCATCTCCGCCTTGTGAGACACCTTTTGTAGGA
*
23740577 CAAAATCATGAGGCC
66 CAAAACCATGAGGCC
23740592 A
1 A
23740593 AAGGGGCCAG
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 77 1.00
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.22
Consensus pattern (80 bp):
AGGAAGGTCACTGGGATATAAAAGGGTTCACACCATCTCCGCCTTGTGAGACACCTTTTGTAGGA
CAAAACCATGAGGCC
Found at i:23742403 original size:18 final size:18
Alignment explanation
Indices: 23742375--23742480 Score: 80
Period size: 18 Copynumber: 6.1 Consensus size: 18
23742365 AACATAATTT
*
23742375 TACTTATAAATAATATTA
1 TACTAATAAATAATATTA
*
23742393 TACAAATAAAT-A-A-TA
1 TACTAATAAATAATATTA
*
23742408 TACTATTAATATAATA-TA
1 TACTAATAA-ATAATATTA
23742426 T--TAATAAATAATATTA
1 TACTAATAAATAATATTA
* *
23742442 TATTCATAAATAATATTA
1 TACTAATAAATAATATTA
* *
23742460 TAATATATTAATAAATATTA
1 TACTA-ATAAAT-AATATTA
23742480 T
1 T
23742481 TATAATATTA
Statistics
Matches: 71, Mismatches: 9, Indels: 14
0.76 0.10 0.15
Matches are distributed among these distances:
15 15 0.21
16 11 0.15
17 2 0.03
18 30 0.42
19 5 0.07
20 8 0.11
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (18 bp):
TACTAATAAATAATATTA
Found at i:23742435 original size:31 final size:31
Alignment explanation
Indices: 23742397--23742572 Score: 117
Period size: 31 Copynumber: 5.4 Consensus size: 31
23742387 ATATTATACA
*
23742397 AATAAATAATATACTATTAATATAATATATT
1 AATAAATAATATAATATTAATATAATATATT
* *
23742428 AATAAATAATATTATATTCATA-AATAATATT
1 AATAAATAATATAATATTAATATAAT-ATATT
* *
23742459 -ATAATATATTAATAAATATTATTAT-A-ATATT
1 AATAA-ATAAT-AT-AATATTAATATAATATATT
* * *
23742490 AATAAAATCTCATATTAATAATAATAGTATAATCTATT
1 AAT-AAA--T-A-A-T-ATAATATTAATATAATATATT
* *
23742528 AATAAATAACATACTATTAATATAATATATT
1 AATAAATAATATAATATTAATATAATATATT
*
23742559 AATATATTAATATA
1 AATA-AATAATATA
23742573 TTAATAAAAA
Statistics
Matches: 112, Mismatches: 18, Indels: 29
0.70 0.11 0.18
Matches are distributed among these distances:
30 7 0.06
31 54 0.48
32 12 0.11
33 11 0.10
34 2 0.02
35 2 0.02
36 9 0.08
37 8 0.07
38 7 0.06
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (31 bp):
AATAAATAATATAATATTAATATAATATATT
Found at i:23742523 original size:25 final size:24
Alignment explanation
Indices: 23742454--23742524 Score: 58
Period size: 25 Copynumber: 3.0 Consensus size: 24
23742444 TTCATAAATA
*
23742454 ATATTATAATATATTAAT-AAATAT-
1 ATATTATAATA-A-TAATAAAATCTC
*
23742478 -TATTATAATATTAATAAAATCTC
1 ATATTATAATAATAATAAAATCTC
* *
23742501 ATATTAATAATAATAGTATAATCT
1 ATATT-ATAATAATAATAAAATCT
23742525 ATTAATAAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
21 4 0.11
22 5 0.13
23 10 0.26
24 4 0.11
25 15 0.39
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (24 bp):
ATATTATAATAATAATAAAATCTC
Found at i:23742563 original size:8 final size:8
Alignment explanation
Indices: 23742501--23742578 Score: 60
Period size: 8 Copynumber: 10.1 Consensus size: 8
23742491 ATAAAATCTC
23742501 ATATTAAT
1 ATATTAAT
23742509 A-A-TAAT
1 ATATTAAT
23742515 AGTA-TAAT
1 A-TATTAAT
*
23742523 CTATTAAT
1 ATATTAAT
* *
23742531 AAATAACAT
1 ATATTA-AT
23742540 ACTATT-A-
1 A-TATTAAT
23742547 ATA-TAAT
1 ATATTAAT
23742554 ATATTAAT
1 ATATTAAT
23742562 ATATTAAT
1 ATATTAAT
23742570 ATATTAAT
1 ATATTAAT
23742578 A
1 A
23742579 AAAAATATAA
Statistics
Matches: 56, Mismatches: 6, Indels: 16
0.72 0.08 0.21
Matches are distributed among these distances:
5 1 0.02
6 8 0.14
7 7 0.12
8 35 0.62
9 3 0.05
10 2 0.04
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (8 bp):
ATATTAAT
Found at i:23748583 original size:15 final size:15
Alignment explanation
Indices: 23748565--23748602 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
23748555 ATGAAATATT
*
23748565 TTTTTAA-TTTATTAA
1 TTTTTAATTTTAAT-A
23748580 TTTTTAATTTTAATA
1 TTTTTAATTTTAATA
23748595 TTTTTAAT
1 TTTTTAAT
23748603 AAAAAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTTTAATTTTAATA
Found at i:23748777 original size:4 final size:4
Alignment explanation
Indices: 23748770--23748795 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
23748760 TATATATATA
23748770 TATT TATT TATT TATT TATT TATT TA
1 TATT TATT TATT TATT TATT TATT TA
23748796 CTAACAGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
TATT
Found at i:23749028 original size:25 final size:28
Alignment explanation
Indices: 23748962--23749030 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 28
23748952 TTGAAAGTTT
23748962 TAATAAAAATTATATATAAATTTATTAAAA
1 TAAT-AAAATT-TATATAAATTTATTAAAA
* *
23748992 TAA-AAAAATTATAT-AA-TTA-TAATA
1 TAATAAAATTTATATAAATTTATTAAAA
23749016 TAATAAAATTTATAT
1 TAATAAAATTTATAT
23749031 CTTATTCATA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
24 7 0.20
25 13 0.37
26 2 0.06
27 5 0.14
28 5 0.14
30 3 0.09
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (28 bp):
TAATAAAATTTATATAAATTTATTAAAA
Found at i:23749653 original size:62 final size:62
Alignment explanation
Indices: 23749583--23749705 Score: 219
Period size: 62 Copynumber: 2.0 Consensus size: 62
23749573 AAATGGCTAC
*
23749583 TAATTATTGGAAGGAAAAGCTTAATTTAATTATTATAGAGTCCTATTATCATATGCTTTAAT
1 TAATTATTGGAAGGAAAAGCTTAATTTAATTATTATAGAGTCCTATTATCATAAGCTTTAAT
* *
23749645 TAATTATTGGGAGGAAAAGCTTAATTTAATTATTATAGAGTCCTATTATTATAAGCTTTAA
1 TAATTATTGGAAGGAAAAGCTTAATTTAATTATTATAGAGTCCTATTATCATAAGCTTTAA
23749706 GCTTAAGAAA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.37, C:0.07, G:0.14, T:0.41
Consensus pattern (62 bp):
TAATTATTGGAAGGAAAAGCTTAATTTAATTATTATAGAGTCCTATTATCATAAGCTTTAAT
Found at i:23750117 original size:29 final size:29
Alignment explanation
Indices: 23750055--23750139 Score: 91
Period size: 29 Copynumber: 2.9 Consensus size: 29
23750045 TTAATAAAAT
* *
23750055 AAATATTTAAAAGTTTAATTCATTTGTAATA
1 AAATATTTAAAA-TTTAATT-AATTATAATA
23750086 AAA-ATTTTAAAATTTAATTAATTATAATA
1 AAATA-TTTAAAATTTAATTAATTATAATA
* * *
23750115 AAATATTAAAAACTTAAATAATTAT
1 AAATATTTAAAATTTAATTAATTAT
23750140 TAAATTTTTA
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
29 28 0.60
30 9 0.19
31 10 0.21
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (29 bp):
AAATATTTAAAATTTAATTAATTATAATA
Found at i:23751767 original size:12 final size:12
Alignment explanation
Indices: 23751750--23751774 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23751740 GTATAAAAAA
23751750 ATTTAATAAATT
1 ATTTAATAAATT
23751762 ATTTAATAAATT
1 ATTTAATAAATT
23751774 A
1 A
23751775 ACAATAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
ATTTAATAAATT
Found at i:23754068 original size:2 final size:2
Alignment explanation
Indices: 23754061--23754088 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
23754051 ATGGTTTGAT
23754061 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
23754089 CTTAGGAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:23755301 original size:22 final size:20
Alignment explanation
Indices: 23755255--23755302 Score: 51
Period size: 22 Copynumber: 2.3 Consensus size: 20
23755245 TGTTAAAAAG
23755255 TAAAAATAAATTTAAAATAT
1 TAAAAATAAATTTAAAATAT
* * *
23755275 AAAAAATAAGAGTTTTAGATAT
1 TAAAAATAA-A-TTTAAAATAT
23755297 TAAAAA
1 TAAAAA
23755303 AAAAATAGGA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 8 0.36
21 1 0.05
22 13 0.59
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (20 bp):
TAAAAATAAATTTAAAATAT
Found at i:23764461 original size:23 final size:24
Alignment explanation
Indices: 23764433--23764478 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
23764423 AAATAATAGG
* *
23764433 TATTAAAATTTTA-ATTTTAAAAT
1 TATTAAAATGTCACATTTTAAAAT
23764456 TATTAAAATGTCACATTTTAAAA
1 TATTAAAATGTCACATTTTAAAA
23764479 ATAATCAGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (24 bp):
TATTAAAATGTCACATTTTAAAAT
Found at i:23767424 original size:13 final size:13
Alignment explanation
Indices: 23767406--23767451 Score: 56
Period size: 14 Copynumber: 3.4 Consensus size: 13
23767396 TATAAATATC
*
23767406 AATTTTGATAAAA
1 AATTTTAATAAAA
23767419 AATTTTAATATAAA
1 AATTTTAATA-AAA
*
23767433 TATTTTAATTAAAA
1 AATTTTAA-TAAAA
23767447 AATTT
1 AATTT
23767452 AATCACAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
13 9 0.32
14 17 0.61
15 2 0.07
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (13 bp):
AATTTTAATAAAA
Found at i:23767439 original size:14 final size:14
Alignment explanation
Indices: 23767406--23767454 Score: 57
Period size: 13 Copynumber: 3.6 Consensus size: 14
23767396 TATAAATATC
*
23767406 AATTTTGATA-AAA
1 AATTTTAATATAAA
23767419 AATTTTAATATAAA
1 AATTTTAATATAAA
*
23767433 TATTTTAAT-TAAA
1 AATTTTAATATAAA
*
23767446 AAATTTAAT
1 AATTTTAAT
23767455 CACAATTATA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
13 20 0.65
14 11 0.35
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (14 bp):
AATTTTAATATAAA
Found at i:23768144 original size:5 final size:5
Alignment explanation
Indices: 23768136--23768176 Score: 55
Period size: 5 Copynumber: 7.8 Consensus size: 5
23768126 AGAAAATATG
*
23768136 ATAAA ATAAA ATAATA TTATAA ATAAA ATAAA ATAAA ATAA
1 ATAAA ATAAA ATAA-A ATA-AA ATAAA ATAAA ATAAA ATAA
23768177 TATTATTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 25 0.78
6 6 0.19
7 1 0.03
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (5 bp):
ATAAA
Found at i:23768157 original size:18 final size:17
Alignment explanation
Indices: 23768130--23768166 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
23768120 AAGAAGAGAA
23768130 AATATGATAAAATAAAAT
1 AATATGAT-AAATAAAAT
*
23768148 AATATTATAAATAAAAT
1 AATATGATAAATAAAAT
23768165 AA
1 AA
23768167 AATAAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (17 bp):
AATATGATAAATAAAAT
Found at i:23769236 original size:25 final size:24
Alignment explanation
Indices: 23769206--23769260 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 24
23769196 AATGGCCGGT
*
23769206 GAAAAAATATAAAA-AAGAAAAAGG
1 GAAAAAATA-AAAAGAAGAAAAACG
*
23769230 GAGAAAAATAAAAAGAAGGAAAACG
1 GA-AAAAATAAAAAGAAGAAAAACG
23769255 GAAAAA
1 GAAAAA
23769261 TCCAATTCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 10 0.37
25 17 0.63
ACGTcount: A:0.73, C:0.02, G:0.20, T:0.05
Consensus pattern (24 bp):
GAAAAAATAAAAAGAAGAAAAACG
Found at i:23769649 original size:2 final size:2
Alignment explanation
Indices: 23769642--23769669 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
23769632 ACAAACACCC
23769642 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
23769670 TTAAATATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:23775647 original size:22 final size:21
Alignment explanation
Indices: 23775622--23775663 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
23775612 TTTTCAGTTT
* *
23775622 TCTATCTTCTTTTGTCTCTTCC
1 TCTATCTACTTCTGT-TCTTCC
23775644 TCTATCTACTTCTGTTCTTC
1 TCTATCTACTTCTGTTCTTC
23775664 ACCCTTATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.07, C:0.31, G:0.05, T:0.57
Consensus pattern (21 bp):
TCTATCTACTTCTGTTCTTCC
Found at i:23783603 original size:27 final size:26
Alignment explanation
Indices: 23783572--23783631 Score: 93
Period size: 27 Copynumber: 2.3 Consensus size: 26
23783562 TTTAAATAGT
*
23783572 AAAAAAAATTATTATAATTATGATAA
1 AAAAAAAATTATTATAACTATGATAA
*
23783598 ATAAAAAAATTATTATAACTATGATTA
1 A-AAAAAAATTATTATAACTATGATAA
23783625 AAAAAAA
1 AAAAAAA
23783632 TATAATAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 7 0.23
27 24 0.77
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (26 bp):
AAAAAAAATTATTATAACTATGATAA
Found at i:23783639 original size:24 final size:25
Alignment explanation
Indices: 23783571--23783639 Score: 77
Period size: 24 Copynumber: 2.7 Consensus size: 25
23783561 ATTTAAATAG
*
23783571 TAAAAAAAATTATTATAATTATGATAAA
1 TAAAAAAAA-TATTATAACTATGAT--A
*
23783599 TAAAAAAATTATTATAACTATGAT-
1 TAAAAAAAATATTATAACTATGATA
*
23783623 TAAAAAAAATATAATAA
1 TAAAAAAAATATTATAA
23783640 AATTTATTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
24 15 0.41
27 14 0.38
28 8 0.22
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.33
Consensus pattern (25 bp):
TAAAAAAAATATTATAACTATGATA
Found at i:23785862 original size:31 final size:31
Alignment explanation
Indices: 23785827--23785886 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
23785817 AAATTTACTC
* *
23785827 ATTAATAAGATAACATCATCTGATTTATTTT
1 ATTAATAAAATAACATCATCTAATTTATTTT
*
23785858 ATTAATAAAATAATATCATCTAATTTATT
1 ATTAATAAAATAACATCATCTAATTTATT
23785887 GATAATATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.43, C:0.08, G:0.03, T:0.45
Consensus pattern (31 bp):
ATTAATAAAATAACATCATCTAATTTATTTT
Found at i:23789502 original size:24 final size:24
Alignment explanation
Indices: 23789475--23789521 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
23789465 CAAAATTAAG
* *
23789475 AAAT-TATTATTATTATTTAAATAT
1 AAATATATAATTA-TATATAAATAT
23789499 AAATATATAATTATATATAAATA
1 AAATATATAATTATATATAAATA
23789522 AAAAATTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (24 bp):
AAATATATAATTATATATAAATAT
Found at i:23789528 original size:18 final size:18
Alignment explanation
Indices: 23789495--23789529 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23789485 TATTATTTAA
* *
23789495 ATATAAATATATAATTAT
1 ATATAAATAAAAAATTAT
23789513 ATATAAATAAAAAATTA
1 ATATAAATAAAAAATTA
23789530 AAAAATAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
ATATAAATAAAAAATTAT
Found at i:23789994 original size:20 final size:20
Alignment explanation
Indices: 23789944--23789998 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
23789934 TATACATTTA
*
23789944 AAAAAAT-ATATTTAAAGAT
1 AAAAAATAATATTTAAAAAT
**
23789963 -AATTATATATATTTAAAAAT
1 AAAAAATA-ATATTTAAAAAT
23789983 AAAAAATAATATTTAA
1 AAAAAATAATATTTAA
23789999 TTATTATTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
18 4 0.14
20 19 0.68
21 5 0.18
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (20 bp):
AAAAAATAATATTTAAAAAT
Found at i:23813848 original size:13 final size:12
Alignment explanation
Indices: 23813826--23813875 Score: 57
Period size: 13 Copynumber: 4.1 Consensus size: 12
23813816 AATTACTTTC
*
23813826 ATATTTTATTTT
1 ATATTATATTTT
23813838 AATATTATA-TTT
1 -ATATTATATTTT
*
23813850 ATATCATATTATT
1 ATATTATATT-TT
23813863 ATATTATATTTT
1 ATATTATATTTT
23813875 A
1 A
23813876 AAATATCAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
11 7 0.22
12 7 0.22
13 18 0.56
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (12 bp):
ATATTATATTTT
Found at i:23819005 original size:34 final size:34
Alignment explanation
Indices: 23818961--23819028 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
23818951 AAAACTGAGC
*
23818961 ATGTACCTGCAAACGAGTCCCTGATAGGCTGAAT
1 ATGTACCTGCAAACAAGTCCCTGATAGGCTGAAT
* * **
23818995 ATGTATCTGCAAATAAGTCTTTGATAGGCTGAAT
1 ATGTACCTGCAAACAAGTCCCTGATAGGCTGAAT
23819029 TTCCTGTTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (34 bp):
ATGTACCTGCAAACAAGTCCCTGATAGGCTGAAT
Found at i:23821056 original size:37 final size:38
Alignment explanation
Indices: 23821014--23821124 Score: 102
Period size: 37 Copynumber: 3.0 Consensus size: 38
23821004 ATTGGATTTT
23821014 TTTTCTCTTGCTATTTCTTCCTGGATTTTTTGCAAGAC
1 TTTTCTCTTGCTATTTCTTCCTGGATTTTTTGCAAGAC
* * * ** * * **
23821052 -TTTCTCTTGTTATTTGTT-ATACA-TTATTGGATTAC
1 TTTTCTCTTGCTATTTCTTCCTGGATTTTTTGCAAGAC
* *
23821087 TTTTCTCTTGCTATGTCTTCCTGGATTTTCTGCAAGAC
1 TTTTCTCTTGCTATTTCTTCCTGGATTTTTTGCAAGAC
23821125 AATATTGGAT
Statistics
Matches: 50, Mismatches: 20, Indels: 6
0.66 0.26 0.08
Matches are distributed among these distances:
35 8 0.16
36 17 0.34
37 18 0.36
38 7 0.14
ACGTcount: A:0.15, C:0.19, G:0.14, T:0.52
Consensus pattern (38 bp):
TTTTCTCTTGCTATTTCTTCCTGGATTTTTTGCAAGAC
Found at i:23821098 original size:73 final size:74
Alignment explanation
Indices: 23820978--23821124 Score: 233
Period size: 73 Copynumber: 2.0 Consensus size: 74
23820968 CAGGCGTGTT
** *
23820978 TTTCTCTTGCTATTTTATTATACATTATTGGATTTTTTTTCTCTTGCTATTTCTTCCTGGATTTT
1 TTTCTCTTGCTATTTTATTATACATTATTGGATTACTTTTCTCTTGCTATGTCTTCCTGGATTTT
*
23821043 TTGCAAGAC
66 CTGCAAGAC
* *
23821052 TTTCTCTTGTTA-TTTGTTATACATTATTGGATTACTTTTCTCTTGCTATGTCTTCCTGGATTTT
1 TTTCTCTTGCTATTTTATTATACATTATTGGATTACTTTTCTCTTGCTATGTCTTCCTGGATTTT
23821116 CTGCAAGAC
66 CTGCAAGAC
23821125 AATATTGGAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
73 56 0.84
74 11 0.16
ACGTcount: A:0.16, C:0.17, G:0.12, T:0.54
Consensus pattern (74 bp):
TTTCTCTTGCTATTTTATTATACATTATTGGATTACTTTTCTCTTGCTATGTCTTCCTGGATTTT
CTGCAAGAC
Found at i:23821938 original size:18 final size:17
Alignment explanation
Indices: 23821908--23821946 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
23821898 TGTGACATTC
23821908 ATAATATTAATATATAA
1 ATAATATTAATATATAA
*
23821925 ATAATATATAATATGTAA
1 ATAATAT-TAATATATAA
23821943 ATAA
1 ATAA
23821947 CACATTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (17 bp):
ATAATATTAATATATAA
Found at i:23822245 original size:18 final size:18
Alignment explanation
Indices: 23822220--23822286 Score: 55
Period size: 18 Copynumber: 3.7 Consensus size: 18
23822210 TTTTTATTTT
23822220 TTAT-TTTTTATCAAAAA
1 TTATGTTTTTATCAAAAA
*
23822237 TTATGTTTTTATATAAAAAA
1 TTATG-TTTT-TATCAAAAA
** * * *
23822257 AAATCTTTTCAACAAAAA
1 TTATGTTTTTATCAAAAA
23822275 TTATGTTTTTAT
1 TTATGTTTTTAT
23822287 TTTTAAAATA
Statistics
Matches: 35, Mismatches: 12, Indels: 5
0.67 0.23 0.10
Matches are distributed among these distances:
17 4 0.11
18 13 0.37
19 8 0.23
20 10 0.29
ACGTcount: A:0.42, C:0.06, G:0.03, T:0.49
Consensus pattern (18 bp):
TTATGTTTTTATCAAAAA
Found at i:23822356 original size:24 final size:26
Alignment explanation
Indices: 23822313--23822361 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 26
23822303 TTGAATTTTG
23822313 AAAAATATAAATTTTATATTTTTAAC
1 AAAAATATAAATTTTATATTTTTAAC
*
23822339 AAAAAT-TACATTTT-TATTTTTAA
1 AAAAATATAAATTTTATATTTTTAA
23822362 AATGTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 9 0.41
25 7 0.32
26 6 0.27
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (26 bp):
AAAAATATAAATTTTATATTTTTAAC
Found at i:23822793 original size:73 final size:75
Alignment explanation
Indices: 23822646--23822808 Score: 172
Period size: 73 Copynumber: 2.2 Consensus size: 75
23822636 ATTCAAAATA
* * *
23822646 TCATTTTTTCAACAAAAATTATATTTTTTTATCTTAAAAACGACATCTTTATTAAATTCTCAAAA
1 TCATTTTTTCAACAAAAATTATATCTTTTTATCTTAAAAACCACATCTTTATTAAATTATCAAAA
23822711 ATAAATTTTT
66 ATAAATTTTT
* * * * * *
23822721 TCATATTTTT-AACAAAAATTGTA-CTTTTTATTTTAAAAGCCTCAT-TTTTTTAAATTATGAAA
1 TCAT-TTTTTCAACAAAAATTATATCTTTTTATCTTAAAAACCACATCTTTATTAAATTATCAAA
*
23822783 AAT-ATTTTTT
65 AATAAATTTTT
* * *
23822793 TTATCTTTTCAGCAAA
1 TCATTTTTTCAACAAA
23822809 TATTGTGTTT
Statistics
Matches: 73, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
71 4 0.05
72 14 0.19
73 17 0.23
74 17 0.23
75 16 0.22
76 5 0.07
ACGTcount: A:0.37, C:0.11, G:0.03, T:0.48
Consensus pattern (75 bp):
TCATTTTTTCAACAAAAATTATATCTTTTTATCTTAAAAACCACATCTTTATTAAATTATCAAAA
ATAAATTTTT
Found at i:23823114 original size:15 final size:15
Alignment explanation
Indices: 23823078--23823107 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
23823068 TTATATTCTC
*
23823078 ATAAAAAATCAAATT
1 ATAAAAAATAAAATT
23823093 ATAAAAAATAAAATT
1 ATAAAAAATAAAATT
23823108 TCAAAAAGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (15 bp):
ATAAAAAATAAAATT
Found at i:23823898 original size:3 final size:3
Alignment explanation
Indices: 23823890--23823951 Score: 54
Period size: 3 Copynumber: 20.7 Consensus size: 3
23823880 CATTGCCTCT
* * * * *
23823890 TCA TCA TCA TCA TCC TCA TCC TCC TCC TCA TCA TCA TCA -GA GTCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA -TCA
*
23823935 TCA TCT TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TC
23823952 CTCTTCTTCA
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
2 1 0.02
3 47 0.96
4 1 0.02
ACGTcount: A:0.24, C:0.39, G:0.03, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:23826604 original size:21 final size:21
Alignment explanation
Indices: 23826578--23826627 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
23826568 TTATTAATTT
*
23826578 TAATTTTATAAATATAATATC
1 TAATTTTATAAATAAAATATC
* * *
23826599 TAATTTTATCATTAAAATATT
1 TAATTTTATAAATAAAATATC
23826620 TAATTTTA
1 TAATTTTA
23826628 CTATTTTCGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (21 bp):
TAATTTTATAAATAAAATATC
Found at i:23827352 original size:15 final size:15
Alignment explanation
Indices: 23827308--23827354 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
23827298 ATTATTATAA
*
23827308 TTATAATTAAAAAAAT
1 TTAT-ATTAAATAAAT
23827324 TTA-A-T-AATAAAT
1 TTATATTAAATAAAT
23827336 TTATATTAAATAAAT
1 TTATATTAAATAAAT
23827351 TTAT
1 TTAT
23827355 TAATGTTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
12 9 0.33
13 2 0.07
14 2 0.07
15 11 0.41
16 3 0.11
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TTATATTAAATAAAT
Found at i:23827383 original size:25 final size:26
Alignment explanation
Indices: 23827308--23827383 Score: 75
Period size: 27 Copynumber: 2.9 Consensus size: 26
23827298 ATTATTATAA
* **
23827308 TTATAATTAAAAAAATTTAATAATAAAT
1 TTAT-ATTAAATAAATTTAATAAT-GTT
*
23827336 TTATATTAAATAAATTTATTAATGTT
1 TTATATTAAATAAATTTAATAATGTT
23827362 TTAT-TTAAATTAAA-TTAATAAT
1 TTATATTAAA-TAAATTTAATAAT
23827384 AATTAAAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
25 12 0.29
26 9 0.21
27 17 0.40
28 4 0.10
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (26 bp):
TTATATTAAATAAATTTAATAATGTT
Found at i:23827475 original size:3 final size:3
Alignment explanation
Indices: 23827467--23827492 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
23827457 GTCCAGTCAA
23827467 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
23827493 AAACATCACG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:23833985 original size:19 final size:22
Alignment explanation
Indices: 23833945--23833987 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
23833935 TTATAAATTT
23833945 TAAATAAAATATGATAATATAA
1 TAAATAAAATATGATAATATAA
23833967 TAAA-AAAATATGA-AA-ATAA
1 TAAATAAAATATGATAATATAA
23833986 TA
1 TA
23833988 TCAATTAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.29
20 2 0.10
21 9 0.43
22 4 0.19
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (22 bp):
TAAATAAAATATGATAATATAA
Found at i:23836032 original size:23 final size:24
Alignment explanation
Indices: 23835998--23836055 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
23835988 TATATTTTTT
23835998 TAATT-TTATTAAA-TTTAAAT-A
1 TAATTATTATTAAATTTTAAATCA
23836019 TAATTATTATTTAAATTTTAAATCA
1 TAATTATTA-TTAAATTTTAAATCA
23836044 TGAATTA-TATTA
1 T-AATTATTATTA
23836056 GGGTATCATC
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
21 5 0.16
22 3 0.09
23 5 0.16
24 10 0.31
25 4 0.12
26 5 0.16
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (24 bp):
TAATTATTATTAAATTTTAAATCA
Found at i:23836999 original size:19 final size:19
Alignment explanation
Indices: 23836975--23837012 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
23836965 TTTTACTCGA
*
23836975 TTAATTTTCATTTTAATTT
1 TTAATTTTAATTTTAATTT
*
23836994 TTAATTTTAATTTTTATTT
1 TTAATTTTAATTTTAATTT
23837013 ATTCATTGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (19 bp):
TTAATTTTAATTTTAATTT
Found at i:23837000 original size:13 final size:13
Alignment explanation
Indices: 23836975--23837009 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
23836965 TTTTACTCGA
*
23836975 TTAA-TTTTCATT
1 TTAATTTTTAATT
23836987 TTAATTTTTAATT
1 TTAATTTTTAATT
23837000 TTAATTTTTA
1 TTAATTTTTA
23837010 TTTATTCATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 4 0.19
13 17 0.81
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.69
Consensus pattern (13 bp):
TTAATTTTTAATT
Found at i:23845555 original size:11 final size:11
Alignment explanation
Indices: 23845539--23845571 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
23845529 CATACTCAAT
23845539 AAAATCTAGTA
1 AAAATCTAGTA
*
23845550 AAAATCCAGTA
1 AAAATCTAGTA
23845561 AAAA-CTAGTA
1 AAAATCTAGTA
23845571 A
1 A
23845572 CAAAGAAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
10 6 0.30
11 14 0.70
ACGTcount: A:0.58, C:0.12, G:0.09, T:0.21
Consensus pattern (11 bp):
AAAATCTAGTA
Found at i:23846608 original size:66 final size:66
Alignment explanation
Indices: 23846464--23846609 Score: 159
Period size: 66 Copynumber: 2.2 Consensus size: 66
23846454 AGCTGTCGTA
* * * * *
23846464 TCCTTGGCTTTCTCTGCTGCATAGTTCTTATATTCAGACGCCTTTCCCGCTGCTGTATCCTTTGC
1 TCCTTGGCTTTCTCTGCCGCATAGTCCGTATATTCAGAAGCCTTTCCCGATGCTGTATCCTTTGC
23846529 T
66 T
* * * * ** * *
23846530 TCCTTAGTTTTCTGTGCCGCATAGTCCGTATATTCGGAAGCCTTTTGCGATG-TGATGTCTTTTG
1 TCCTTGGCTTTCTCTGCCGCATAGTCCGTATATTCAGAAGCCTTTCCCGATGCTG-TATCCTTTG
23846594 CT
65 CT
23846596 TCCTTGGCTTTCTC
1 TCCTTGGCTTTCTC
23846610 AGCTGTATAA
Statistics
Matches: 63, Mismatches: 16, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
65 2 0.03
66 61 0.97
ACGTcount: A:0.11, C:0.27, G:0.19, T:0.43
Consensus pattern (66 bp):
TCCTTGGCTTTCTCTGCCGCATAGTCCGTATATTCAGAAGCCTTTCCCGATGCTGTATCCTTTGC
T
Found at i:23846819 original size:99 final size:98
Alignment explanation
Indices: 23846644--23846837 Score: 246
Period size: 99 Copynumber: 2.0 Consensus size: 98
23846634 GGCCTTTACT
* *
23846644 GTTACTTTGTCCTTTGCTTCTTTCGCCTTCTGGGCAGCAGAGTCTGTCGTCTCCTTTGCCTTCGG
1 GTTACTGTGTCCTTTGCTTCCTTCGCCTTCTGGGCAGCAGAGTCTGTCGTCTCCTTTGCCTTCGG
* ** *
23846709 CGCTGCATAATCTGTGTACTCAGCTGTCTTCCCA
66 CGCTG-ATAATCAGCATAATCAGCTGTCTTCCCA
* * * *
23846743 GTTACTGTGTCCTTTGTTTCCTTCGCCTTCTGGGCGGCAGAGTCTTTCGTCTCCTTTTCCTTCTG
1 GTTACTGTGTCCTTTGCTTCCTTCGCCTTCTGGGCAGCAGAGTCTGTCGTCTCCTTTGCCTTC-G
* *
23846808 AGTGGTG-TAATCAGCATAATCAGCTGTCTT
65 -GCGCTGATAATCAGCATAATCAGCTGTCTT
23846838 TTGCTTTGTG
Statistics
Matches: 81, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
99 76 0.94
100 1 0.01
101 4 0.05
ACGTcount: A:0.11, C:0.28, G:0.22, T:0.40
Consensus pattern (98 bp):
GTTACTGTGTCCTTTGCTTCCTTCGCCTTCTGGGCAGCAGAGTCTGTCGTCTCCTTTGCCTTCGG
CGCTGATAATCAGCATAATCAGCTGTCTTCCCA
Found at i:23846982 original size:21 final size:21
Alignment explanation
Indices: 23846958--23847003 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
23846948 TCTCAGCTAA
* *
23846958 CTCCTTCGCTTTCTCTGATGC
1 CTCCTTCGCCTGCTCTGATGC
23846979 CTCCTTCGCCTGCTCTGATGC
1 CTCCTTCGCCTGCTCTGATGC
23847000 CTCC
1 CTCC
23847004 CTGGACTTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.04, C:0.43, G:0.15, T:0.37
Consensus pattern (21 bp):
CTCCTTCGCCTGCTCTGATGC
Found at i:23867267 original size:2 final size:2
Alignment explanation
Indices: 23867260--23867290 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
23867250 CTATGGATAT
23867260 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
23867291 GTGTAAAAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:23868432 original size:39 final size:39
Alignment explanation
Indices: 23868389--23868463 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
23868379 AAAATACATA
*
23868389 AATAAAAACTAAACCTGATTACAAATTATTCATTGAACG
1 AATAAAAACCAAACCTGATTACAAATTATTCATTGAACG
*
23868428 AATAAAAACCGAACCTGATTACAAATTATTCATTGA
1 AATAAAAACCAAACCTGATTACAAATTATTCATTGA
23868464 TCATTTTATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.48, C:0.16, G:0.08, T:0.28
Consensus pattern (39 bp):
AATAAAAACCAAACCTGATTACAAATTATTCATTGAACG
Found at i:23876511 original size:15 final size:15
Alignment explanation
Indices: 23876491--23876525 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
23876481 TTTAACATGT
23876491 TAAAAT-ATTTGATCA
1 TAAAATAATTTG-TCA
23876506 TAAAATAATTTGTCA
1 TAAAATAATTTGTCA
23876521 TAAAA
1 TAAAA
23876526 CATGTGTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.51, C:0.06, G:0.06, T:0.37
Consensus pattern (15 bp):
TAAAATAATTTGTCA
Found at i:23877948 original size:2 final size:2
Alignment explanation
Indices: 23877941--23877969 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
23877931 TGCTTTTAAA
23877941 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
23877970 AAACGAGTCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:23878810 original size:22 final size:22
Alignment explanation
Indices: 23878784--23878825 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
23878774 AAATATTATG
23878784 ATTTA-AAATTTTAATAAAAAAT
1 ATTTATAAA-TTTAATAAAAAAT
*
23878806 ATTTATAAATTTGATAAAAA
1 ATTTATAAATTTAATAAAAA
23878826 TCAAAAGACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (22 bp):
ATTTATAAATTTAATAAAAAAT
Found at i:23892687 original size:73 final size:72
Alignment explanation
Indices: 23892602--23892762 Score: 209
Period size: 73 Copynumber: 2.2 Consensus size: 72
23892592 GTAAAAGATC
* * *
23892602 TACCCCTAAAAGACTCCTAAAATTCCT-AAGTCCTACGGTAACAAATCAAAAAGAAAAGGGTAAA
1 TACCCCTAAAAGACTCCTAAAACTCCTAAAGTCCTAAGGTAACAAATC--AAACAAAAGGGTAAA
23892666 AAAGAGACT
64 AAAGAGACT
* * *
23892675 TACCCCTAAAAGACACCTAAAACTCTTAAAAGTCCTAAGGTAACAAGTCAAACAAAAGGGTAAAA
1 TACCCCTAAAAGACTCCTAAAACTCCT-AAAGTCCTAAGGTAACAAATCAAACAAAAGGGTAAAA
23892740 AAGAGACT
65 AAGAGACT
*
23892748 T-CCTCCCAAAAGACT
1 TACC-CCTAAAAGACT
23892763 TTTTCAAAGT
Statistics
Matches: 77, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
72 2 0.03
73 57 0.74
75 18 0.23
ACGTcount: A:0.47, C:0.22, G:0.13, T:0.17
Consensus pattern (72 bp):
TACCCCTAAAAGACTCCTAAAACTCCTAAAGTCCTAAGGTAACAAATCAAACAAAAGGGTAAAAA
AGAGACT
Found at i:23893011 original size:21 final size:21
Alignment explanation
Indices: 23892987--23893026 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
23892977 ATTTATTATT
*
23892987 TAATTTATATATAATATATAA
1 TAATTAATATATAATATATAA
* *
23893008 TAATTAATTTATTATATAT
1 TAATTAATATATAATATAT
23893027 TTTGAATTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
TAATTAATATATAATATATAA
Found at i:23893150 original size:20 final size:20
Alignment explanation
Indices: 23893122--23893160 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
23893112 AATAATAAAA
*
23893122 TGTTATATATTTTTTATTTT
1 TGTTATATAATTTTTATTTT
*
23893142 TGTTGTATAATTTTTATTT
1 TGTTATATAATTTTTATTT
23893161 AATATAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.72
Consensus pattern (20 bp):
TGTTATATAATTTTTATTTT
Found at i:23893497 original size:25 final size:25
Alignment explanation
Indices: 23893468--23893516 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
23893458 CATTATAATC
23893468 TTAAATATT-TCGAAAGTTTTAATTA
1 TTAAATATTAT-GAAAGTTTTAATTA
*
23893493 TTAAATATTATGAAGGTTTTAATT
1 TTAAATATTATGAAAGTTTTAATT
23893517 TTGAATGCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.39, C:0.02, G:0.10, T:0.49
Consensus pattern (25 bp):
TTAAATATTATGAAAGTTTTAATTA
Found at i:23893654 original size:22 final size:23
Alignment explanation
Indices: 23893629--23893673 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
23893619 AAAAAATATT
23893629 TGTAT-AACTTTAAATTAAGATA
1 TGTATAAACTTTAAATTAAGATA
* *
23893651 TGTATAAATTTTAAATTGAGATA
1 TGTATAAACTTTAAATTAAGATA
23893674 AGATATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.42
Consensus pattern (23 bp):
TGTATAAACTTTAAATTAAGATA
Found at i:23897664 original size:87 final size:87
Alignment explanation
Indices: 23897549--23897721 Score: 292
Period size: 87 Copynumber: 2.0 Consensus size: 87
23897539 CTTATCTTTT
23897549 AGGACAAGATCTGCAAAATCAATAAACCACAAAATGGTTAAATTCATCTTTAAGAAAGCAACAAA
1 AGGACAAGATCTGCAAAATCAATAAACCACAAAATGGTTAAATTCATCTTTAAGAAAGCAACAAA
23897614 GAGGAGCAAATATTATAAATGA
66 GAGGAGCAAATATTATAAATGA
** * *
23897636 AGGACAAGATCTGCAAAATGGATAAACCACAAAATGGTTAAATTCATCTTTAAGAAAGTAACGAA
1 AGGACAAGATCTGCAAAATCAATAAACCACAAAATGGTTAAATTCATCTTTAAGAAAGCAACAAA
* *
23897701 GTGGAGCAAATATTATCAATG
66 GAGGAGCAAATATTATAAATG
23897722 GTGTAGTGCA
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 80 1.00
ACGTcount: A:0.48, C:0.13, G:0.17, T:0.22
Consensus pattern (87 bp):
AGGACAAGATCTGCAAAATCAATAAACCACAAAATGGTTAAATTCATCTTTAAGAAAGCAACAAA
GAGGAGCAAATATTATAAATGA
Found at i:23902865 original size:11 final size:11
Alignment explanation
Indices: 23902849--23902892 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
23902839 TAAAATTTTA
23902849 AAATTTAATTT
1 AAATTTAATTT
23902860 AAATTTAAATTT
1 AAATTT-AATTT
**
23902872 TTATTTAATTT
1 AAATTTAATTT
*
23902883 AAATTAAATT
1 AAATTTAATT
23902893 AATTAAAATT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
11 18 0.67
12 9 0.33
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
AAATTTAATTT
Found at i:23902866 original size:6 final size:6
Alignment explanation
Indices: 23902849--23902904 Score: 50
Period size: 6 Copynumber: 10.2 Consensus size: 6
23902839 TAAAATTTTA
**
23902849 AAATTT -AATTT AAATTT AAATTT TTATTT -AATTT AAA-TT AAA-TT
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT
*
23902893 -AATTA AAATTT A
1 AAATTT AAATTT A
23902905 TCAATTCATT
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
4 2 0.05
5 17 0.41
6 22 0.54
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
AAATTT
Found at i:23903029 original size:19 final size:19
Alignment explanation
Indices: 23903005--23903043 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
23902995 AATTTTATTT
* *
23903005 TATAAAATTTTAAAATATA
1 TATAAAAATTTAAAAAATA
23903024 TATAAAAATTTAAAAAATA
1 TATAAAAATTTAAAAAATA
23903043 T
1 T
23903044 TTAATTTGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
TATAAAAATTTAAAAAATA
Found at i:23907218 original size:16 final size:16
Alignment explanation
Indices: 23907197--23907229 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
23907187 CATGACTTAG
23907197 TTGCATTCTTAGTATT
1 TTGCATTCTTAGTATT
23907213 TTGCATTCTTAGTATT
1 TTGCATTCTTAGTATT
23907229 T
1 T
23907230 GGATAGAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.12, T:0.58
Consensus pattern (16 bp):
TTGCATTCTTAGTATT
Found at i:23908914 original size:18 final size:21
Alignment explanation
Indices: 23908870--23908917 Score: 57
Period size: 22 Copynumber: 2.4 Consensus size: 21
23908860 AAGTTTTTAT
23908870 TTTTTTATTTATATTCAAATAA
1 TTTTTTATTTATA-TCAAATAA
*
23908892 GTTTTTATTTA-A-CAAA-AA
1 TTTTTTATTTATATCAAATAA
23908910 TTTTTTAT
1 TTTTTTAT
23908918 ATGAAGGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 9 0.38
19 4 0.17
21 1 0.04
22 10 0.42
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.58
Consensus pattern (21 bp):
TTTTTTATTTATATCAAATAA
Found at i:23909009 original size:30 final size:28
Alignment explanation
Indices: 23908937--23909021 Score: 84
Period size: 30 Copynumber: 2.9 Consensus size: 28
23908927 TATTTGGCTA
* *
23908937 TAAATTAAAGATTAAGTGTT-TTATTAGG
1 TAAATTAAAGATTAAGAGTTATT-TGAGG
*
23908965 TAAA-TAAATTATTAAAGAGTTATTTGAGTG
1 TAAATTAAA-GATT-AAGAGTTATTTGAG-G
23908995 TAAATTAAAGATTAAGAGTTTATTTGA
1 TAAATTAAAGATTAAGAG-TTATTTGA
23909022 ATATGATAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
27 4 0.09
28 7 0.15
29 14 0.30
30 18 0.38
31 4 0.09
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.41
Consensus pattern (28 bp):
TAAATTAAAGATTAAGAGTTATTTGAGG
Found at i:23910479 original size:14 final size:13
Alignment explanation
Indices: 23910439--23910482 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
23910429 TTTTTTATTA
23910439 AAAATTATGAAA-T
1 AAAATTAT-AAATT
*
23910452 AAAATTAAAAATT
1 AAAATTATAAATT
23910465 AAAATTGATAAATT
1 AAAATT-ATAAATT
23910479 AAAA
1 AAAA
23910483 GATTTTAGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
12 3 0.11
13 14 0.52
14 10 0.37
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.30
Consensus pattern (13 bp):
AAAATTATAAATT
Found at i:23915716 original size:13 final size:13
Alignment explanation
Indices: 23915698--23915723 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
23915688 TTTATCTTCG
23915698 AAATAAAATTTCA
1 AAATAAAATTTCA
23915711 AAATAAAATTTCA
1 AAATAAAATTTCA
23915724 TCAACCAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
AAATAAAATTTCA
Found at i:23916267 original size:32 final size:32
Alignment explanation
Indices: 23916226--23916286 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
23916216 TTTATATAAA
23916226 ATATCATATAAATATATGAATTATAATATTTT
1 ATATCATATAAATATATGAATTATAATATTTT
* *
23916258 ATATGATATAAATATATGAATTATCATAT
1 ATATCATATAAATATATGAATTATAATAT
23916287 CTAGTTGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.44
Consensus pattern (32 bp):
ATATCATATAAATATATGAATTATAATATTTT
Found at i:23917142 original size:23 final size:22
Alignment explanation
Indices: 23917099--23917144 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
23917089 AAAATATGAC
23917099 ATATATATTTTTTTATTAAATTT
1 ATATATATTTTTTTA-TAAATTT
23917122 ATATATAATTTTTGTTA-AAATTT
1 ATATAT-ATTTTT-TTATAAATTT
23917145 TAAATTATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 12 0.57
24 6 0.29
25 3 0.14
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
ATATATATTTTTTTATAAATTT
Found at i:23919448 original size:12 final size:13
Alignment explanation
Indices: 23919431--23919460 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
23919421 CATTACTTCT
23919431 TTCTTGTTC-TAG
1 TTCTTGTTCTTAG
23919443 TTCTTGTTCTTAG
1 TTCTTGTTCTTAG
23919456 TTCTT
1 TTCTT
23919461 CCCTGGTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.53
13 8 0.47
ACGTcount: A:0.07, C:0.17, G:0.13, T:0.63
Consensus pattern (13 bp):
TTCTTGTTCTTAG
Found at i:23920135 original size:2 final size:2
Alignment explanation
Indices: 23920128--23920157 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
23920118 CCCTCATTTC
23920128 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23920158 GAACATCACC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23921449 original size:30 final size:30
Alignment explanation
Indices: 23921390--23921449 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
23921380 GCAGAGCCAC
* *
23921390 TTCTAAAATCCTAATATCTAGTGTGATCTT
1 TTCTAAAATCCTAATATCTAGTATAATCTT
* *
23921420 TTCTAAAATCTTAATGTCTAGTATAATCTT
1 TTCTAAAATCCTAATATCTAGTATAATCTT
23921450 AATCTTGTGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.15, G:0.08, T:0.45
Consensus pattern (30 bp):
TTCTAAAATCCTAATATCTAGTATAATCTT
Found at i:23928300 original size:2 final size:2
Alignment explanation
Indices: 23928293--23928321 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
23928283 CTCCCTTCCT
23928293 TA TA TA TA TA TA TA TA -A TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
23928322 ATTATATTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:23928314 original size:13 final size:13
Alignment explanation
Indices: 23928296--23928328 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
23928286 CCTTCCTTAT
23928296 ATATATATATATA
1 ATATATATATATA
23928309 ATATATATATATA
1 ATATATATATATA
23928322 AT-TATAT
1 ATATATAT
23928329 TTGATAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 5 0.25
13 15 0.75
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATATATATATATA
Found at i:23928379 original size:10 final size:10
Alignment explanation
Indices: 23928364--23928396 Score: 57
Period size: 10 Copynumber: 3.2 Consensus size: 10
23928354 AATATGATAC
23928364 AAAAATATAT
1 AAAAATATAT
23928374 AAAAATATAT
1 AAAAATATAT
23928384 AAAAATAATAT
1 AAAAAT-ATAT
23928395 AA
1 AA
23928397 TAAAATTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 16 0.73
11 6 0.27
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (10 bp):
AAAAATATAT
Found at i:23928393 original size:23 final size:24
Alignment explanation
Indices: 23928354--23928401 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
23928344 ATGATGTGAT
*
23928354 AATATGATACAAAAATAT-ATAAA
1 AATATGATAAAAAAATATAATAAA
23928377 AATAT-ATAAAAATAATATAATAAA
1 AATATGATAAAAA-AATATAATAAA
23928401 A
1 A
23928402 TTTTAATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 6 0.27
23 10 0.45
24 6 0.27
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (24 bp):
AATATGATAAAAAAATATAATAAA
Found at i:23936749 original size:2 final size:2
Alignment explanation
Indices: 23936737--23936776 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
23936727 AGATCAACTC
* *
23936737 TA TA CA TA TA TA TA TA TA TA TG TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
23936777 GTCCTGTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:23940569 original size:2 final size:2
Alignment explanation
Indices: 23940562--23940596 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
23940552 GTCAAGTTTA
23940562 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23940597 GATGCAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:23950469 original size:20 final size:20
Alignment explanation
Indices: 23950444--23950485 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
23950434 TGCCTGCCAG
23950444 TGTTACTGAAACTTTACATA
1 TGTTACTGAAACTTTACATA
23950464 TGTTACTGAAACTTTACATA
1 TGTTACTGAAACTTTACATA
23950484 TG
1 TG
23950486 CATCCTGCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.40
Consensus pattern (20 bp):
TGTTACTGAAACTTTACATA
Found at i:23951525 original size:24 final size:24
Alignment explanation
Indices: 23951493--23951541 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
23951483 CTCTGGAAAG
23951493 TCGTAGGGTTGCCCAATATAGATA
1 TCGTAGGGTTGCCCAATATAGATA
*
23951517 TCGTAGGGTTGCTCAATATAGATA
1 TCGTAGGGTTGCCCAATATAGATA
23951541 T
1 T
23951542 GCTAAACAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (24 bp):
TCGTAGGGTTGCCCAATATAGATA
Found at i:23953418 original size:3 final size:3
Alignment explanation
Indices: 23953410--23953467 Score: 107
Period size: 3 Copynumber: 19.3 Consensus size: 3
23953400 TATTTGATTA
*
23953410 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
23953458 AAT AAT AAT A
1 AAT AAT AAT A
23953468 TTCATTTATT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:23954493 original size:149 final size:150
Alignment explanation
Indices: 23954237--23954535 Score: 442
Period size: 149 Copynumber: 2.0 Consensus size: 150
23954227 CTACTATTTA
* *
23954237 TAAATGTAAATTTTACATAATTAAATTATAGTTGGCTAATTATATATACAATAATTATATTTAAA
1 TAAATGTAAATTTTACATAATTAAATTATAATTGACTAATTATATATACAATAATTATATTTAAA
* * * * * *
23954302 CTACGATCGTCATGTACCAGTCTCAGTGGCGGCGCCCCTAAGGACA-TAAACAGATCAATTCATA
66 ATACGATCGTCATGAAACAGTCTCAATGGCAGCGCCCCTAAGGACACAAAACAGATCAATTCATA
23954366 GGCCAAACATAAACGAAAAT
131 GGCCAAACATAAACGAAAAT
23954386 TAAATGTAAATTTTACATAATTTTAAATTATAATTGACTAA-T-TATATACAATAATTATATTTA
1 TAAATGTAAATTTTACATAA--TTAAATTATAATTGACTAATTATATATACAATAATTATATTTA
** * *
23954449 AAATACTCTCGTCATGAAACAGTCTCAATGGCAGCGCCCTTAAGGACACAAAACAGGTCAATTCA
64 AAATACGATCGTCATGAAACAGTCTCAATGGCAGCGCCCCTAAGGACACAAAACAGATCAATTCA
*
23954514 TCGGCCAAACATAAACGAAAAT
129 TAGGCCAAACATAAACGAAAAT
23954536 CATTATCATC
Statistics
Matches: 134, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
149 81 0.60
150 36 0.27
151 17 0.13
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.30
Consensus pattern (150 bp):
TAAATGTAAATTTTACATAATTAAATTATAATTGACTAATTATATATACAATAATTATATTTAAA
ATACGATCGTCATGAAACAGTCTCAATGGCAGCGCCCCTAAGGACACAAAACAGATCAATTCATA
GGCCAAACATAAACGAAAAT
Found at i:23956230 original size:519 final size:520
Alignment explanation
Indices: 23955250--23956288 Score: 1864
Period size: 519 Copynumber: 2.0 Consensus size: 520
23955240 GTTTATCTTA
* * **
23955250 ATCTTAAAAATAAGATAAAATTTTTTACATGTCCAATTGGCAATCTTAAAGATGAGGTAAAATTT
1 ATCTTAAAAATAAGATAAAATCTTCTACATGTCCAATTCACAATCTTAAAGATGAGGTAAAATTT
* *
23955315 TTTACATGTCCAAGATTTAGTGAGACTATAAATGAATCTGAAGCACAAGAAAAGAACCAAGGTAA
66 TTTACATGTCCAAGATTTAGTGAGACTATAAATAAATATGAAGCACAAGAAAAGAACCAAGGTAA
*
23955380 TAATGCAGATAATAAGCTAGTCCAAGATAGATATGGTCAACAAGCACAGATTCTATCCAACATTT
131 TAATGCAGATAATAAACTAGTCCAAGATAGATATGGTCAACAAGCACAGATTCTATCCAACATTT
* * * * *
23955445 CTTGATTTATATGTATCTTCATATATGTGTACATAAATTACCTACTCATCGAGGAAAAGGATGGG
196 CTTGATTTATATATATCTTCATATACGTCTACATAAATTACCTACTCATCAAGGAAAAGGATAGG
*
23955510 CGAGTTTGGGATTCTTTCATTGCCAGCCTCCTAACATTTCCAAGCAGCTTGCGTGGTTAGTTTCA
261 CGAGTTTGGGATTCTTTCATTGCCAGCCTCCTAACATTTCCAAGCAGCTTGCATGGTTAGTTTCA
23955575 ATTCTATTTTCAACCGTCATTTTGAAGAAAGAAAAAAAATCTTTATTTGAGGGAGACTTGTTTTG
326 ATTCTATTTTCAACCGTCATTTTGAAGAAAGAAAAAAAATCTTTATTTGAGGGAGACTTGTTTTG
*
23955640 AATGAGCAGGCTCCATGATGATACGTTTATTAAAGGTACAATCACACGGGTACTGCATGACAGTA
391 AATGAGCAGGCTCCATGATGATACGTTTATTAAAGGTACAATCACACGGGTACTGCATGACAATA
*
23955705 AGGGAAACATGTTGGATACCTTCTCATACATATCAGATGAGGCTGTAGGATTTTTTAAGCAGTTG
456 AGGGAAACATGTTGGATACCTTCTCATACATATCAGATGAGGCGGTAGGATTTTTTAAGCAGTTG
* *
23955770 ATCTTAAAAATAAGGTAAAATCTTCTACATGTCCAATTCACGATCTTAAAGATGAGGTAAAATTT
1 ATCTTAAAAATAAGATAAAATCTTCTACATGTCCAATTCACAATCTTAAAGATGAGGTAAAATTT
23955835 TTTACATGTCCAAGATTTAGTGAGACTATAAATAAATATGAAGCACAAGAAAAGAACCAAGGTAA
66 TTTACATGTCCAAGATTTAGTGAGACTATAAATAAATATGAAGCACAAGAAAAGAACCAAGGTAA
*
23955900 TAATGCAGATAATAAACTAGTCCAAGATAGATATGGTCAACAAGCATAGATTCTATCCAACATTT
131 TAATGCAGATAATAAACTAGTCCAAGATAGATATGGTCAACAAGCACAGATTCTATCCAACATTT
23955965 CTTGATTTATATATATCTTCATATACGTCTACATAAA-TACCTACTCATCAAGGAAAAGGATAGG
196 CTTGATTTATATATATCTTCATATACGTCTACATAAATTACCTACTCATCAAGGAAAAGGATAGG
23956029 CGAGTTTGGGATTCTTTCATTGCCAGCCTCCTAACATTTCCAAGCAGCTTGCATGGTTAGTTTCA
261 CGAGTTTGGGATTCTTTCATTGCCAGCCTCCTAACATTTCCAAGCAGCTTGCATGGTTAGTTTCA
**
23956094 ATTCTATTTTCAATGGTCATTTTGAAGAAAGAAAAAAAATCTTTATTTGAGGGAGACTTGTTTTG
326 ATTCTATTTTCAACCGTCATTTTGAAGAAAGAAAAAAAATCTTTATTTGAGGGAGACTTGTTTTG
* *
23956159 AATGAGCAGGCTCCTTGCTGATACGTTTATTAAAGGTACAATCACACGGGTACTGCATGACAATA
391 AATGAGCAGGCTCCATGATGATACGTTTATTAAAGGTACAATCACACGGGTACTGCATGACAATA
*
23956224 AGGGAAACATGTTGGATACCTTCTCATAGATATCAGATGAGGCGGTAGGATTTTTTAAGCAGTTG
456 AGGGAAACATGTTGGATACCTTCTCATACATATCAGATGAGGCGGTAGGATTTTTTAAGCAGTTG
23956289 CTGGGCACAA
Statistics
Matches: 496, Mismatches: 23, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
519 277 0.56
520 219 0.44
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.31
Consensus pattern (520 bp):
ATCTTAAAAATAAGATAAAATCTTCTACATGTCCAATTCACAATCTTAAAGATGAGGTAAAATTT
TTTACATGTCCAAGATTTAGTGAGACTATAAATAAATATGAAGCACAAGAAAAGAACCAAGGTAA
TAATGCAGATAATAAACTAGTCCAAGATAGATATGGTCAACAAGCACAGATTCTATCCAACATTT
CTTGATTTATATATATCTTCATATACGTCTACATAAATTACCTACTCATCAAGGAAAAGGATAGG
CGAGTTTGGGATTCTTTCATTGCCAGCCTCCTAACATTTCCAAGCAGCTTGCATGGTTAGTTTCA
ATTCTATTTTCAACCGTCATTTTGAAGAAAGAAAAAAAATCTTTATTTGAGGGAGACTTGTTTTG
AATGAGCAGGCTCCATGATGATACGTTTATTAAAGGTACAATCACACGGGTACTGCATGACAATA
AGGGAAACATGTTGGATACCTTCTCATACATATCAGATGAGGCGGTAGGATTTTTTAAGCAGTTG
Found at i:23961028 original size:11 final size:12
Alignment explanation
Indices: 23961008--23961032 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23960998 ATATTAAAAA
23961008 TAAAATTTTTTC
1 TAAAATTTTTTC
23961020 TAAAATTTTTTC
1 TAAAATTTTTTC
23961032 T
1 T
23961033 TTAATGGTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (12 bp):
TAAAATTTTTTC
Found at i:23961305 original size:5 final size:5
Alignment explanation
Indices: 23961295--23961337 Score: 59
Period size: 5 Copynumber: 8.2 Consensus size: 5
23961285 AAGAATAAGG
*
23961295 TAAAA TAAAA TAATAT TATAAA TAAAA TAAAA TAAAA TAAAA T
1 TAAAA TAAAA TAA-AA TA-AAA TAAAA TAAAA TAAAA TAAAA T
23961338 TTTATATTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
5 27 0.79
6 6 0.18
7 1 0.03
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (5 bp):
TAAAA
Found at i:23961468 original size:14 final size:14
Alignment explanation
Indices: 23961445--23961478 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
23961435 AAATACAAAA
*
23961445 TTTAATTTTTTTAT
1 TTTAAATTTTTTAT
23961459 TTTAAATTTTTTAT
1 TTTAAATTTTTTAT
*
23961473 ATTAAA
1 TTTAAA
23961479 AAAATGATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTAAATTTTTTAT
Found at i:23966731 original size:13 final size:13
Alignment explanation
Indices: 23966705--23966740 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
23966695 TTGGAAAGAG
23966705 TTTTCTTCTCTTCT
1 TTTTCTT-TCTTCT
*
23966719 TTTTCTTTTTTCT
1 TTTTCTTTCTTCT
23966732 TTTTCTTTC
1 TTTTCTTTC
23966741 CTACCACCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 13 0.65
14 7 0.35
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTTCTTTCTTCT
Found at i:23968679 original size:14 final size:15
Alignment explanation
Indices: 23968660--23968702 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 15
23968650 CATTATCATT
23968660 AATAAAT-TTTAAAA
1 AATAAATATTTAAAA
23968674 AATAAATATTTAAAA
1 AATAAATATTTAAAA
**
23968689 TTTTAAATATTTAA
1 -AATAAATATTTAA
23968703 GTACATTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 7 0.28
15 7 0.28
16 11 0.44
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
AATAAATATTTAAAA
Found at i:23975609 original size:17 final size:17
Alignment explanation
Indices: 23975577--23975610 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
23975567 TTACTTCCAC
*
23975577 CCTCTATTTTCCTGTTT
1 CCTCTATTTTACTGTTT
*
23975594 CCTCTATTTTATTGTTT
1 CCTCTATTTTACTGTTT
23975611 TGTGCATGTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.09, C:0.24, G:0.06, T:0.62
Consensus pattern (17 bp):
CCTCTATTTTACTGTTT
Found at i:23976253 original size:16 final size:16
Alignment explanation
Indices: 23976229--23976264 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
23976219 GTCAAATATA
23976229 CATGAAAAGCTCAATG
1 CATGAAAAGCTCAATG
*
23976245 CATGTAAAGCTCAATG
1 CATGAAAAGCTCAATG
23976261 CATG
1 CATG
23976265 GAAATTTACT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.22
Consensus pattern (16 bp):
CATGAAAAGCTCAATG
Found at i:23976812 original size:25 final size:25
Alignment explanation
Indices: 23976771--23976818 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
23976761 TTGTATTTGT
*
23976771 TGAAAAGCTAAGAAATAAAACTGTG
1 TGAAAAACTAAGAAATAAAACTGTG
23976796 TGAAAAACTTAAG-AATAAAACTG
1 TGAAAAAC-TAAGAAATAAAACTG
23976819 AATGTATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.54, C:0.08, G:0.17, T:0.21
Consensus pattern (25 bp):
TGAAAAACTAAGAAATAAAACTGTG
Found at i:23976967 original size:22 final size:22
Alignment explanation
Indices: 23976939--23976982 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
23976929 ATTTTCTGTC
23976939 CTTAATTCTTAG-GATACAAATA
1 CTTAATTC-TAGAGATACAAATA
23976961 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
23976983 TAAATATACA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 3 0.14
22 18 0.86
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:23980835 original size:22 final size:22
Alignment explanation
Indices: 23980807--23980850 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
23980797 ATTTTCTGTC
23980807 CTTAATTCTAG-GAATACAAATA
1 CTTAATTCTAGAG-ATACAAATA
23980829 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
23980851 TAAATATACA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 20 0.95
23 1 0.05
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:23983969 original size:22 final size:22
Alignment explanation
Indices: 23983943--23983986 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
23983933 TGTATATTTA
*
23983943 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
23983965 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
23983987 GAAGATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:23984389 original size:18 final size:18
Alignment explanation
Indices: 23984366--23984400 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23984356 ATGTTCTTTG
*
23984366 GGTAAAGTTTCTAGTTCA
1 GGTAAAGCTTCTAGTTCA
*
23984384 GGTAAAGCTTCTGGTTC
1 GGTAAAGCTTCTAGTTC
23984401 TCATGGATTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.14, G:0.26, T:0.37
Consensus pattern (18 bp):
GGTAAAGCTTCTAGTTCA
Found at i:23987860 original size:22 final size:22
Alignment explanation
Indices: 23987834--23987877 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
23987824 TGTATATTTA
*
23987834 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
23987856 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
23987878 GAAGATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:23992674 original size:2 final size:2
Alignment explanation
Indices: 23992667--23992707 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
23992657 AGTGTCCTAC
* * *
23992667 TA TA TA TA TT TA TA TA TA TA TA TA TA TG TA TA TA TT TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
23992708 TTGACAGAAG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56
Consensus pattern (2 bp):
TA
Found at i:23994499 original size:39 final size:39
Alignment explanation
Indices: 23994424--23994502 Score: 106
Period size: 39 Copynumber: 2.0 Consensus size: 39
23994414 ATATTTCTAG
*
23994424 GGTTTGATTTGATGAGCAAGTTTGTTGGCATCAATGATT
1 GGTTTGATTTGATGAGCAAGTTTGTTAGCATCAATGATT
* * *
23994463 GGTTTGATTTGATGGGCAATTTTAG-TAGCATTAATGATT
1 GGTTTGATTTGATGAGCAAGTTT-GTTAGCATCAATGATT
23994502 G
1 G
23994503 ATTTCGGATT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 34 0.97
40 1 0.03
ACGTcount: A:0.24, C:0.06, G:0.28, T:0.42
Consensus pattern (39 bp):
GGTTTGATTTGATGAGCAAGTTTGTTAGCATCAATGATT
Found at i:23996856 original size:5 final size:6
Alignment explanation
Indices: 23996839--23996863 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
23996829 AATGATGCCA
23996839 TCTTTT TCTTTT TCTTTT TCTTTT T
1 TCTTTT TCTTTT TCTTTT TCTTTT T
23996864 TAAATAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TCTTTT
Found at i:24002500 original size:23 final size:22
Alignment explanation
Indices: 24002474--24002518 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
24002464 TTTATATAAT
*
24002474 TAAATTTAAAATATAATATTTAA
1 TAAACTTAAAATATAAT-TTTAA
* *
24002497 TAAACTTATAATTTAATTTTAA
1 TAAACTTAAAATATAATTTTAA
24002519 CATTTGTAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (22 bp):
TAAACTTAAAATATAATTTTAA
Found at i:24003388 original size:27 final size:25
Alignment explanation
Indices: 24003350--24003414 Score: 62
Period size: 26 Copynumber: 2.6 Consensus size: 25
24003340 CTCTTTATTT
24003350 AATTATCT-TTTTTCAAGATATCTCAA
1 AATTATCTATTTTTCAA-ATATCT-AA
* *
24003376 AATTATGTATTTTTTTAAATATCTAA
1 AATTATCTA-TTTTTCAAATATCTAA
*
24003402 AATT-TTTATTTTT
1 AATTATCTATTTTT
24003415 TATATTTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
24 5 0.15
25 3 0.09
26 13 0.38
27 6 0.18
28 7 0.21
ACGTcount: A:0.34, C:0.08, G:0.03, T:0.55
Consensus pattern (25 bp):
AATTATCTATTTTTCAAATATCTAA
Found at i:24004506 original size:22 final size:24
Alignment explanation
Indices: 24004481--24004540 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
24004471 TTTTTATATA
24004481 TTATTAATTT-TTATATT-AAA-TT
1 TTATTAATTTATTA-ATTCAAATTT
*
24004503 TTATCAATTTATTAATTCAAATTTT
1 TTATTAATTTATTAATTCAAA-TTT
24004528 TTATTAATTTATT
1 TTATTAATTTATT
24004541 TTTAATAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
22 12 0.38
23 6 0.19
25 14 0.44
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (24 bp):
TTATTAATTTATTAATTCAAATTT
Found at i:24005301 original size:32 final size:32
Alignment explanation
Indices: 24005259--24005331 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 32
24005249 ATAAATCATG
*
24005259 ATATAT-AATTTTTATATAAAATATAATATAA
1 ATATATAAATTTTAATATAAAATATAATATAA
***
24005290 ATATATAAATTTTAATATTTTATATAATATAA
1 ATATATAAATTTTAATATAAAATATAATATAA
24005322 AT-TCATAAAT
1 ATAT-ATAAAT
24005332 CCTTAAATCT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
31 7 0.19
32 29 0.81
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (32 bp):
ATATATAAATTTTAATATAAAATATAATATAA
Found at i:24013574 original size:16 final size:16
Alignment explanation
Indices: 24013553--24013584 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
24013543 AGGACATATT
24013553 TAAAACAACAAACTAC
1 TAAAACAACAAACTAC
24013569 TAAAACAACAAACTAC
1 TAAAACAACAAACTAC
24013585 CTCAACTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.25, G:0.00, T:0.12
Consensus pattern (16 bp):
TAAAACAACAAACTAC
Done.