Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25814696
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 122000 characters in sequence are not A, C, G, or T
File 121 of 126
Found at i:24015669 original size:18 final size:18
Alignment explanation
Indices: 24015646--24015682 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
24015636 GAGCAGATTT
24015646 TAATGATGATGTTTATAG
1 TAATGATGATGTTTATAG
24015664 TAATGATGATGTTTATAG
1 TAATGATGATGTTTATAG
24015682 T
1 T
24015683 GAGGAATAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.22, T:0.46
Consensus pattern (18 bp):
TAATGATGATGTTTATAG
Found at i:24018113 original size:29 final size:29
Alignment explanation
Indices: 24018071--24018128 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
24018061 GTTTTCCTTT
24018071 AGCTTCTGTCTCAAGGAACGCATTGATTC
1 AGCTTCTGTCTCAAGGAACGCATTGATTC
24018100 AGCTTCTGTCTCAAGGAACGCATTGATTC
1 AGCTTCTGTCTCAAGGAACGCATTGATTC
24018129 TTTCTTTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (29 bp):
AGCTTCTGTCTCAAGGAACGCATTGATTC
Found at i:24021620 original size:36 final size:39
Alignment explanation
Indices: 24021579--24021654 Score: 131
Period size: 38 Copynumber: 2.0 Consensus size: 39
24021569 CAAGAAGGGT
24021579 CTGCTGAAGG-AAGC-AAACATCATAGAGCCG-AACCAG
1 CTGCTGAAGGAAAGCAAAACATCATAGAGCCGAAACCAG
24021615 CTGCTGAAGGAAAGCAAAACATCATAGAGCCGAAACCAG
1 CTGCTGAAGGAAAGCAAAACATCATAGAGCCGAAACCAG
24021654 C
1 C
24021655 GTACACGTCT
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
36 10 0.27
37 4 0.11
38 16 0.43
39 7 0.19
ACGTcount: A:0.41, C:0.25, G:0.24, T:0.11
Consensus pattern (39 bp):
CTGCTGAAGGAAAGCAAAACATCATAGAGCCGAAACCAG
Found at i:24023111 original size:16 final size:16
Alignment explanation
Indices: 24023075--24023112 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
24023065 ATAAGTCAAA
*
24023075 CTTTTTTATTAAAACT
1 CTTTTTTATTAAAAAT
*
24023091 CTTTTTTTTTAAAAAT
1 CTTTTTTATTAAAAAT
24023107 -TTTTTT
1 CTTTTTT
24023113 CTTACAAGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.66
Consensus pattern (16 bp):
CTTTTTTATTAAAAAT
Found at i:24023127 original size:51 final size:50
Alignment explanation
Indices: 24023018--24023170 Score: 186
Period size: 51 Copynumber: 3.0 Consensus size: 50
24023008 TTTATAAAAT
* *
24023018 TCAAACTTACTTATTAAGAAT-TTCTTTCCTCTTAAAATTCTTTTTTTATAAG
1 TCAAACTTATTTATTAAGAATCTT-TTT-CTCTTAAAATT-TTTTTTTACAAG
* *
24023070 TCAAACTTTTTTATTAA-AACTCTTTTT-TTTTAAAAATTTTTTTCTTACAAG
1 TCAAACTTATTTATTAAGAA-TCTTTTTCTCTT-AAAATTTTTTT-TTACAAG
24023121 TCAAACTTATTTATTAAGAATCTTTTTCTCTTAAAATTTTTCTTTTACAA
1 TCAAACTTATTTATTAAGAATCTTTTTCTCTTAAAATTTTT-TTTTACAA
24023171 ATATTTTTAT
Statistics
Matches: 88, Mismatches: 6, Indels: 15
0.81 0.06 0.14
Matches are distributed among these distances:
50 8 0.09
51 52 0.59
52 26 0.30
53 2 0.02
ACGTcount: A:0.31, C:0.14, G:0.03, T:0.52
Consensus pattern (50 bp):
TCAAACTTATTTATTAAGAATCTTTTTCTCTTAAAATTTTTTTTTACAAG
Found at i:24026500 original size:29 final size:30
Alignment explanation
Indices: 24026436--24026500 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 30
24026426 TAATAAAATA
*
24026436 TTTAA-TATGATATTTTAATTTAAAAATTT
1 TTTAATTATGATATTTGAATTTAAAAATTT
*
24026465 TTT-ATTATGATATTTGAA-TTATAAATTT
1 TTTAATTATGATATTTGAATTTAAAAATTT
24026493 TTTAATTA
1 TTTAATTA
24026501 ATATTATACT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
28 13 0.41
29 19 0.59
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (30 bp):
TTTAATTATGATATTTGAATTTAAAAATTT
Found at i:24027651 original size:29 final size:29
Alignment explanation
Indices: 24027609--24027666 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
24027599 GTTTTCCTTT
24027609 AGCTTCTGTCTCAAGGAACGCATTGATTC
1 AGCTTCTGTCTCAAGGAACGCATTGATTC
24027638 AGCTTCTGTCTCAAGGAACGCATTGATTC
1 AGCTTCTGTCTCAAGGAACGCATTGATTC
24027667 TTTCTTTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (29 bp):
AGCTTCTGTCTCAAGGAACGCATTGATTC
Found at i:24031176 original size:39 final size:39
Alignment explanation
Indices: 24031122--24031200 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
24031112 CAAGAAGGGT
24031122 CTGCTGAAGGAAAGCAAAACATCATAGAGCCGAAACCAG
1 CTGCTGAAGGAAAGCAAAACATCATAGAGCCGAAACCAG
24031161 CTGCTGAAGGAAAGCAAAACATCATAGAGCCGAAACCAG
1 CTGCTGAAGGAAAGCAAAACATCATAGAGCCGAAACCAG
24031200 C
1 C
24031201 GTACACGTCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.43, C:0.24, G:0.23, T:0.10
Consensus pattern (39 bp):
CTGCTGAAGGAAAGCAAAACATCATAGAGCCGAAACCAG
Found at i:24032636 original size:52 final size:51
Alignment explanation
Indices: 24032564--24032715 Score: 159
Period size: 52 Copynumber: 2.9 Consensus size: 51
24032554 TTATAATCAT
* * *
24032564 TCAAACTTACCTATTAAAAATTTCTCTCCTCTTAAAATTCTTCTTC-TATAAG
1 TCAAACTTATCTATTAAAAATTT-T-TCCTCTTAAAATTCTTCTTCTTACAAA
* * *
24032616 TCAAATTTATCTATTAAAAATTTTTTTCCTTTTAAAATT-TTTTTCTTACAAA
1 TCAAACTTATCTATTAAAAA--TTTTTCCTCTTAAAATTCTTCTTCTTACAAA
*
24032668 TCAAACTTATTTATTAAGAATATTTTT-CTCTTAAAATTCTTCTT-TTAC
1 TCAAACTTATCTATTAA-AA-ATTTTTCCTCTTAAAATTCTTCTTCTTAC
24032716 CAATATTCTT
Statistics
Matches: 84, Mismatches: 10, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
51 19 0.23
52 58 0.69
53 3 0.04
54 4 0.05
ACGTcount: A:0.33, C:0.16, G:0.01, T:0.49
Consensus pattern (51 bp):
TCAAACTTATCTATTAAAAATTTTTCCTCTTAAAATTCTTCTTCTTACAAA
Found at i:24034403 original size:51 final size:51
Alignment explanation
Indices: 24034327--24034434 Score: 148
Period size: 51 Copynumber: 2.1 Consensus size: 51
24034317 TCTTCTCCTC
* * * *
24034327 TAAAA-TTTTTCTTCTATAAGTCAAACTTGTCTATTAAAATTCTTTTTCTTT
1 TAAAATTTTTTCTTCAAAAAGTCAAACTTATCTATTAAAA-TCTTTTTCTCT
*
24034378 TAAAATTTTTTCTT-AAAAAGTCAAACTTATTTATTAAAATCTTTTTCTCT
1 TAAAATTTTTTCTTCAAAAAGTCAAACTTATCTATTAAAATCTTTTTCTCT
24034428 TAAAATT
1 TAAAATT
24034435 CTTCTTTTAC
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
50 17 0.33
51 26 0.51
52 8 0.16
ACGTcount: A:0.34, C:0.12, G:0.03, T:0.51
Consensus pattern (51 bp):
TAAAATTTTTTCTTCAAAAAGTCAAACTTATCTATTAAAATCTTTTTCTCT
Found at i:24037821 original size:29 final size:30
Alignment explanation
Indices: 24037757--24037821 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 30
24037747 TAATAAAATA
*
24037757 TTTAA-TATGATATTTTAATTTAAAAATTT
1 TTTAATTATGATATTTGAATTTAAAAATTT
*
24037786 TTT-ATTATGATATTTGAA-TTATAAATTT
1 TTTAATTATGATATTTGAATTTAAAAATTT
24037814 TTTAATTA
1 TTTAATTA
24037822 ATATTATACT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
28 13 0.41
29 19 0.59
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (30 bp):
TTTAATTATGATATTTGAATTTAAAAATTT
Found at i:24038975 original size:29 final size:29
Alignment explanation
Indices: 24038933--24038990 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
24038923 GTTTTCCTTT
24038933 AGCTTCTGTCTCAAGGAACGCATTGATTC
1 AGCTTCTGTCTCAAGGAACGCATTGATTC
24038962 AGCTTCTGTCTCAAGGAACGCATTGATTC
1 AGCTTCTGTCTCAAGGAACGCATTGATTC
24038991 TTTCTTTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (29 bp):
AGCTTCTGTCTCAAGGAACGCATTGATTC
Found at i:24043921 original size:52 final size:51
Alignment explanation
Indices: 24043849--24044000 Score: 150
Period size: 52 Copynumber: 2.9 Consensus size: 51
24043839 TTATAATCAT
* * *
24043849 TCAAACTTACCTATTAAAAATTTCTCTCCTCTTAAAATTCTTCTTC-TATAAG
1 TCAAACTTATCTATTAAAAATTT-T-TCCTCTTAAAATTCTTCTTCTTACAAA
* * * *
24043901 TCAAATTTATCTATTAAAAATTTTTTTCATTTTAAAATT-TTTTTCTTACAAA
1 TCAAACTTATCTATTAAAAA--TTTTTCCTCTTAAAATTCTTCTTCTTACAAA
*
24043953 TCAAACTTATTTATTAAGAATATTTTT-CTCTTAAAATTCTTCTT-TTAC
1 TCAAACTTATCTATTAA-AA-ATTTTTCCTCTTAAAATTCTTCTTCTTAC
24044001 CAATATTCTT
Statistics
Matches: 82, Mismatches: 12, Indels: 13
0.77 0.11 0.12
Matches are distributed among these distances:
51 18 0.22
52 57 0.70
53 3 0.04
54 4 0.05
ACGTcount: A:0.34, C:0.16, G:0.01, T:0.49
Consensus pattern (51 bp):
TCAAACTTATCTATTAAAAATTTTTCCTCTTAAAATTCTTCTTCTTACAAA
Found at i:24045669 original size:52 final size:53
Alignment explanation
Indices: 24045582--24045728 Score: 180
Period size: 52 Copynumber: 2.8 Consensus size: 53
24045572 TTATAACAAT
* *
24045582 TCAAACTTA-CTTATTAAGAATTC-TTCTCCTCTTAAAATTTTTCTTC-TATAAG
1 TCAAACTTATC-TATTAA-AATTCTTTTTCCTCTTAAAATTTTTCTTCTTAAAAG
* *
24045634 TCAAACTTGTCTATTAAAATTCTTTTTCCTTTTAAAATTTTT-TTCTTAAAAG
1 TCAAACTTATCTATTAAAATTCTTTTTCCTCTTAAAATTTTTCTTCTTAAAAG
* *
24045686 TCAAACTTATTTATTAAAA-TCTTTTT-CTCTTAAAATTCTTCTT
1 TCAAACTTATCTATTAAAATTCTTTTTCCTCTTAAAATTTTTCTT
24045729 TTACAAATAT
Statistics
Matches: 83, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
50 12 0.14
51 17 0.20
52 53 0.64
53 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.03, T:0.50
Consensus pattern (53 bp):
TCAAACTTATCTATTAAAATTCTTTTTCCTCTTAAAATTTTTCTTCTTAAAAG
Found at i:24049491 original size:29 final size:30
Alignment explanation
Indices: 24049447--24049519 Score: 94
Period size: 29 Copynumber: 2.4 Consensus size: 30
24049437 AGAAAAAAAT
24049447 TTTGAATTATAAAAAAATATTTAATATGATA
1 TTTGAATTAT-AAAAAATATTTAATATGATA
* * * *
24049478 TTTTAATT-TAAAAATTTTTTATTATGATA
1 TTTGAATTATAAAAAATATTTAATATGATA
24049507 TTTGAATTATAAA
1 TTTGAATTATAAA
24049520 TTTATTAATT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
29 24 0.67
30 5 0.14
31 7 0.19
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.49
Consensus pattern (30 bp):
TTTGAATTATAAAAAATATTTAATATGATA
Found at i:24049530 original size:29 final size:29
Alignment explanation
Indices: 24049459--24049530 Score: 85
Period size: 28 Copynumber: 2.5 Consensus size: 29
24049449 TGAATTATAA
* *
24049459 AAAAATATTTAA-TATGATATTTTAATTT
1 AAAAATTTTTAATTATGATATTTGAATTT
*
24049487 AAAAATTTTTTATTATGATATTTGAA-TT
1 AAAAATTTTTAATTATGATATTTGAATTT
*
24049515 ATAAATTTATTAATTA
1 AAAAATTT-TTAATTA
24049531 ATATTATATT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (29 bp):
AAAAATTTTTAATTATGATATTTGAATTT
Found at i:24055955 original size:52 final size:51
Alignment explanation
Indices: 24055870--24056012 Score: 157
Period size: 52 Copynumber: 2.8 Consensus size: 51
24055860 ATAACCATTT
** * *
24055870 AAACTTACCTATTAAAAAT-TCTTCTCTTCTTAAAATTCTTTTTGTCT-AAGTC
1 AAACTTATTTATTAAAAATAT-TTTTC-TCTTAAAATTCTTTTTCT-TAAAGTC
* *
24055922 AAACTTGTTTATTAAAAATATTTTTCCTTTTAAAATT-TTTTTCTTACAAGTC
1 AAACTTATTTATTAAAAATATTTTT-CTCTTAAAATTCTTTTTCTTA-AAGTC
*
24055974 AAATTTATTTATTAAAAATATTTTTCTCTTAAAATTCTT
1 AAACTTATTTATTAAAAATATTTTTCTCTTAAAATTCTT
24056013 ATTTTACAAA
Statistics
Matches: 77, Mismatches: 9, Indels: 10
0.80 0.09 0.10
Matches are distributed among these distances:
50 1 0.01
51 16 0.21
52 58 0.75
53 2 0.03
ACGTcount: A:0.34, C:0.13, G:0.03, T:0.50
Consensus pattern (51 bp):
AAACTTATTTATTAAAAATATTTTTCTCTTAAAATTCTTTTTCTTAAAGTC
Found at i:24057968 original size:54 final size:54
Alignment explanation
Indices: 24057905--24058008 Score: 156
Period size: 54 Copynumber: 1.9 Consensus size: 54
24057895 ATATGTTTGG
*
24057905 TTATGTTAAAAGGGTGCAC-AAGAGTTTAAGTTTGTGTTTGTTTGGGTTGAGTGC
1 TTATGTTAAAAGGGTGCACAAAGA-TTTAAGTTTGTATTTGTTTGGGTTGAGTGC
** *
24057959 TTATGTTAAAAGGGTGCACAAAGATTTGGGTTTGTATTTGTTTGTGTTGA
1 TTATGTTAAAAGGGTGCACAAAGATTTAAGTTTGTATTTGTTTGGGTTGA
24058009 AAATACTCAA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
54 41 0.91
55 4 0.09
ACGTcount: A:0.23, C:0.05, G:0.30, T:0.42
Consensus pattern (54 bp):
TTATGTTAAAAGGGTGCACAAAGATTTAAGTTTGTATTTGTTTGGGTTGAGTGC
Found at i:24061051 original size:120 final size:120
Alignment explanation
Indices: 24060916--24061157 Score: 466
Period size: 120 Copynumber: 2.0 Consensus size: 120
24060906 ATTTAGACCC
24060916 TTCTTAAAATTAGTCATTGTTTACCAAGCCGAGGTTTTTTGGTACAATTCAAAATTTAATTTAAT
1 TTCTTAAAATTAGTCATTGTTTACCAAGCCGAGGTTTTTTGGTACAATTCAAAATTTAATTTAAT
*
24060981 TAATTAATATTTTTATTTTAAAAAAATAACATTTAATAAATTTAAGATTAAAATT
66 TAATTAATATTGTTATTTTAAAAAAATAACATTTAATAAATTTAAGATTAAAATT
*
24061036 TTCTTAAAATTAGTCATTGTTTACCAAGCCGAGGTTTTTTGGTACAATTTAAAATTTAATTTAAT
1 TTCTTAAAATTAGTCATTGTTTACCAAGCCGAGGTTTTTTGGTACAATTCAAAATTTAATTTAAT
24061101 TAATTAATATTGTTATTTTAAAAAAATAACATTTAATAAATTTAAGATTAAAATT
66 TAATTAATATTGTTATTTTAAAAAAATAACATTTAATAAATTTAAGATTAAAATT
24061156 TT
1 TT
24061158 AATATATAAA
Statistics
Matches: 120, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 120 1.00
ACGTcount: A:0.40, C:0.07, G:0.08, T:0.45
Consensus pattern (120 bp):
TTCTTAAAATTAGTCATTGTTTACCAAGCCGAGGTTTTTTGGTACAATTCAAAATTTAATTTAAT
TAATTAATATTGTTATTTTAAAAAAATAACATTTAATAAATTTAAGATTAAAATT
Found at i:24062747 original size:25 final size:23
Alignment explanation
Indices: 24062719--24062782 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 23
24062709 TTTTTTTAAA
24062719 ATTAATTTGATTTGAA-TTGAATTTT
1 ATTAATTTGATTT-AATTTG-A-TTT
24062744 ATTAATTTGATTTAATTTGATTT
1 ATTAATTTGATTTAATTTGATTT
24062767 ATTAATTT-A-TTAATTT
1 ATTAATTTGATTTAATTT
24062783 TAATTTTTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.18
22 1 0.03
23 11 0.29
24 3 0.08
25 16 0.42
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (23 bp):
ATTAATTTGATTTAATTTGATTT
Found at i:24062760 original size:35 final size:31
Alignment explanation
Indices: 24062720--24062782 Score: 90
Period size: 35 Copynumber: 1.9 Consensus size: 31
24062710 TTTTTTAAAA
24062720 TTAATTTGATTTGAATTGAATTTTATTAATTTGAT
1 TTAATTTGATTT--ATT-AA-TTTATTAATTTGAT
24062755 TTAATTTGATTTATTAATTTATTAATTT
1 TTAATTTGATTTATTAATTTATTAATTT
24062783 TAATTTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
31 11 0.39
32 2 0.07
33 3 0.11
35 12 0.43
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (31 bp):
TTAATTTGATTTATTAATTTATTAATTTGAT
Found at i:24062807 original size:25 final size:26
Alignment explanation
Indices: 24062754--24062811 Score: 75
Period size: 25 Copynumber: 2.2 Consensus size: 26
24062744 ATTAATTTGA
*
24062754 TTTAATTTGATTTATTAATTTATTAAT
1 TTTAATTT-ATTTATTAATATATTAAT
24062781 TTTAATTT-TTTATTATATATATT-AT
1 TTTAATTTATTTATTA-ATATATTAAT
24062806 TTTAAT
1 TTTAAT
24062812 AAAAATTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 15 0.52
26 6 0.21
27 8 0.28
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.66
Consensus pattern (26 bp):
TTTAATTTATTTATTAATATATTAAT
Found at i:24062899 original size:19 final size:20
Alignment explanation
Indices: 24062864--24062904 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
24062854 TATTTTATTT
24062864 TATAAAAAAATTAAAAATTA
1 TATAAAAAAATTAAAAATTA
*
24062884 TATAAATAAA-TAAAAATTA
1 TATAAAAAAATTAAAAATTA
24062903 TA
1 TA
24062905 ACTTGATTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
TATAAAAAAATTAAAAATTA
Found at i:24071694 original size:2 final size:2
Alignment explanation
Indices: 24071687--24071711 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
24071677 AGTTAGACTT
24071687 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
24071712 TGCCACACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24074009 original size:2 final size:2
Alignment explanation
Indices: 24074002--24074032 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
24073992 AAGATAGCAC
24074002 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
24074033 ATTATAGGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:24079290 original size:2 final size:2
Alignment explanation
Indices: 24079285--24079316 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
24079275 GGGGGGGGGG
24079285 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
24079317 AAGGAAATAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:24084400 original size:19 final size:18
Alignment explanation
Indices: 24084372--24084408 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
24084362 ACGAATAATT
*
24084372 ATTAATTAATTATAATTTA
1 ATTAAATAATTA-AATTTA
24084391 ATTAAATAATTAAATTTA
1 ATTAAATAATTAAATTTA
24084409 CACGTTGTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTAAATAATTAAATTTA
Found at i:24084976 original size:156 final size:156
Alignment explanation
Indices: 24084710--24085308 Score: 1063
Period size: 156 Copynumber: 3.8 Consensus size: 156
24084700 GTTAGTTGTT
*
24084710 GAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAAG
1 GAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGG
* *
24084775 AGTATACAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTATTTAAAGAAAAAT
66 AGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAT
24084840 CAAGATCAACCAATTAATTAATTATC
131 CAAGATCAACCAATTAATTAATTATC
*
24084866 GAAAATTATTCTCAATTGACTCTAATACTTTTAGCAAAAAATTGAGAAAATTCCCTCACCTCAGG
1 GAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGG
24084931 AGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAT
66 AGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAT
24084996 CAAGATCAACCAATTAATTAATTATC
131 CAAGATCAACCAATTAATTAATTATC
24085022 GAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGG
1 GAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGG
24085087 AGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAA
66 AGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAG----AA
* * *
24085152 AAATCAAAATCAGCCAAGTAATTAATTATC
127 AAATCAAGATCAACCAATTAATTAATTATC
*
24085182 GGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGG
1 GAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGG
* *
24085247 AGTATGCAAGAAAAACTACTGTTTTTACTTGTAGAGGCTCCGTCGTCGGATTAATTAAAGAA
66 AGTATGCAAGAAAAACTACTG-TTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAGAA
24085309 TAAAGAAAAA
Statistics
Matches: 427, Mismatches: 11, Indels: 9
0.96 0.02 0.02
Matches are distributed among these distances:
156 275 0.64
157 2 0.00
160 114 0.27
161 36 0.08
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.29
Consensus pattern (156 bp):
GAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGG
AGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAT
CAAGATCAACCAATTAATTAATTATC
Found at i:24085365 original size:10 final size:10
Alignment explanation
Indices: 24085350--24085376 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
24085340 GTCAAATAAA
24085350 AAAAAAATTC
1 AAAAAAATTC
24085360 AAAAAAATTC
1 AAAAAAATTC
24085370 AAAAAAA
1 AAAAAAA
24085377 AAAAAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:24085431 original size:5 final size:5
Alignment explanation
Indices: 24085394--24085448 Score: 58
Period size: 5 Copynumber: 10.6 Consensus size: 5
24085384 AAACCTGGAG
* *
24085394 CGGCT CGGAT CGCAGCT CGGCT TGG-T GCGGCT CGGCT CGGCT CGGCT
1 CGGCT CGGCT CG--GCT CGGCT CGGCT -CGGCT CGGCT CGGCT CGGCT
24085441 CGGCT CGG
1 CGGCT CGG
24085449 AGGGGCTGAA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
4 1 0.02
5 36 0.86
6 1 0.02
7 4 0.10
ACGTcount: A:0.04, C:0.35, G:0.42, T:0.20
Consensus pattern (5 bp):
CGGCT
Found at i:24085455 original size:15 final size:15
Alignment explanation
Indices: 24085394--24085455 Score: 52
Period size: 15 Copynumber: 4.0 Consensus size: 15
24085384 AAACCTGGAG
*
24085394 CGGCTCGGATCGCAGCT
1 CGGCTCGGA--GCGGCT
* *
24085411 CGGCTTGGTGCGGCT
1 CGGCTCGGAGCGGCT
**
24085426 CGGCTCGGCTCGGCT
1 CGGCTCGGAGCGGCT
*
24085441 CGGCTCGGAGGGGCT
1 CGGCTCGGAGCGGCT
24085456 GAAACGCGCG
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
15 29 0.81
17 7 0.19
ACGTcount: A:0.05, C:0.32, G:0.44, T:0.19
Consensus pattern (15 bp):
CGGCTCGGAGCGGCT
Found at i:24085692 original size:19 final size:19
Alignment explanation
Indices: 24085668--24085712 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
24085658 GAACGCCGGT
*
24085668 GCCGGATTCTGGAAAATTC
1 GCCGGAATCTGGAAAATTC
* *
24085687 GCCGGAATCTGGGAATTTC
1 GCCGGAATCTGGAAAATTC
24085706 GCCGGAA
1 GCCGGAA
24085713 ATTGGCCGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.22
Consensus pattern (19 bp):
GCCGGAATCTGGAAAATTC
Found at i:24086177 original size:12 final size:12
Alignment explanation
Indices: 24086160--24086192 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
24086150 CTAGCCCTCC
24086160 AAAATAAAAATT
1 AAAATAAAAATT
24086172 AAAAT-AAAATT
1 AAAATAAAAATT
24086183 AAAA-AAAAAT
1 AAAATAAAAAT
24086193 CTAGATAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 15 0.75
12 5 0.25
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
AAAATAAAAATT
Found at i:24086508 original size:20 final size:20
Alignment explanation
Indices: 24086486--24086550 Score: 94
Period size: 20 Copynumber: 3.2 Consensus size: 20
24086476 TTGCCCATTT
* *
24086486 GGGCCAGGCCCAAATGATCT
1 GGGCCAGGCCCAATTGATCC
*
24086506 GGGTCAGGCCCAATTGATCC
1 GGGCCAGGCCCAATTGATCC
*
24086526 GGGTCAGGCCCAATTGATCC
1 GGGCCAGGCCCAATTGATCC
24086546 GGGCC
1 GGGCC
24086551 CGGACCTGAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.20, C:0.31, G:0.32, T:0.17
Consensus pattern (20 bp):
GGGCCAGGCCCAATTGATCC
Found at i:24086656 original size:1 final size:1
Alignment explanation
Indices: 24086650--24086674 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
24086640 CCGACTCGAC
24086650 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
24086675 AGCTCCTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:24086733 original size:41 final size:41
Alignment explanation
Indices: 24086697--24087069 Score: 525
Period size: 42 Copynumber: 8.9 Consensus size: 41
24086687 CAGAGGCTCT
*
24086697 ACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACC
1 ACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGTACC
*
24086738 ACGACTTTGGACCAAAGATTAAAATTGCTCCTCTAAACAGAGG--CA
1 ACGACTTT-GA--AAA-A-T-AAATTGCTCCTCTAAACAGAGGTACC
* * *
24086783 ACGAACTTTGGAAAGTAAATTGCTCCTCTCAACAGAGGTACC
1 ACG-ACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGTACC
*
24086825 ACGACTTTGGAAAAATAAATTGCTCCTCTAAACCGAGGTACC
1 ACGACTTT-GAAAAATAAATTGCTCCTCTAAACAGAGGTACC
* *
24086867 ACGACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGGTACC
1 ACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGTACC
24086908 ACGACTTTGGAAAAATAAATTGCTCCTCTAAACAGAGGTACC
1 ACGACTTT-GAAAAATAAATTGCTCCTCTAAACAGAGGTACC
* * *
24086950 ACGACTTTGAAAAGTAAATTGCTCCTCTCAACAAAGGTACC
1 ACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGTACC
24086991 ACGACTTTGGAAAAATAAATTGCTCCTCTAAACAGAGGTACC
1 ACGACTTT-GAAAAATAAATTGCTCCTCTAAACAGAGGTACC
* *
24087033 ACGACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGG
1 ACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGG
24087070 CAACGAACTT
Statistics
Matches: 298, Mismatches: 22, Indels: 24
0.87 0.06 0.07
Matches are distributed among these distances:
40 21 0.07
41 117 0.39
42 120 0.40
43 3 0.01
44 3 0.01
45 6 0.02
46 6 0.02
47 22 0.07
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (41 bp):
ACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGTACC
Found at i:24086851 original size:42 final size:42
Alignment explanation
Indices: 24086697--24087085 Score: 535
Period size: 41 Copynumber: 9.3 Consensus size: 42
24086687 CAGAGGCTCT
*
24086697 ACGACTTT-GAAAAATAAATTGCTCCTCTAAACAGAGGCACC
1 ACGACTTTGGAAAAATAAATTGCTCCTCTAAACAGAGGTACC
*
24086738 ACGACTTTGGACCAAAGATTAAAATTGCTCCTCTAAACAGAGG--CA
1 ACGACTTTGGA--AAA-A-T-AAATTGCTCCTCTAAACAGAGGTACC
* *
24086783 ACGAACTTTGG-AAAGTAAATTGCTCCTCTCAACAGAGGTACC
1 ACG-ACTTTGGAAAAATAAATTGCTCCTCTAAACAGAGGTACC
*
24086825 ACGACTTTGGAAAAATAAATTGCTCCTCTAAACCGAGGTACC
1 ACGACTTTGGAAAAATAAATTGCTCCTCTAAACAGAGGTACC
* *
24086867 ACGACTTT-GAAAAGTAAATTGCTCCTCTCAACAGAGGTACC
1 ACGACTTTGGAAAAATAAATTGCTCCTCTAAACAGAGGTACC
24086908 ACGACTTTGGAAAAATAAATTGCTCCTCTAAACAGAGGTACC
1 ACGACTTTGGAAAAATAAATTGCTCCTCTAAACAGAGGTACC
* * *
24086950 ACGACTTT-GAAAAGTAAATTGCTCCTCTCAACAAAGGTACC
1 ACGACTTTGGAAAAATAAATTGCTCCTCTAAACAGAGGTACC
24086991 ACGACTTTGGAAAAATAAATTGCTCCTCTAAACAGAGGTACC
1 ACGACTTTGGAAAAATAAATTGCTCCTCTAAACAGAGGTACC
* * *
24087033 ACGACTTT-GAAAAGTAAATTGCTCCTCTCAACAGAGG--CA
1 ACGACTTTGGAAAAATAAATTGCTCCTCTAAACAGAGGTACC
24087072 ACGAACTTTGGAAA
1 ACG-ACTTTGGAAA
24087086 GTAAATACTC
Statistics
Matches: 313, Mismatches: 21, Indels: 28
0.86 0.06 0.08
Matches are distributed among these distances:
39 4 0.01
40 26 0.08
41 123 0.39
42 119 0.38
43 3 0.01
44 3 0.01
45 5 0.02
46 8 0.03
47 22 0.07
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (42 bp):
ACGACTTTGGAAAAATAAATTGCTCCTCTAAACAGAGGTACC
Found at i:24086898 original size:83 final size:83
Alignment explanation
Indices: 24086697--24087085 Score: 615
Period size: 83 Copynumber: 4.7 Consensus size: 83
24086687 CAGAGGCTCT
* * *
24086697 ACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGACCAAAGATTAAAA
1 ACGACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGGTACCACGACTTTGGA--AAA-A-T-AAA
*
24086762 TTGCTCCTCTAAACAGAGG--CA
61 TTGCTCCTCTAAACAGAGGTACC
*
24086783 ACGAACTTTGGAAAGTAAATTGCTCCTCTCAACAGAGGTACCACGACTTTGGAAAAATAAATTGC
1 ACG-ACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGGTACCACGACTTTGGAAAAATAAATTGC
*
24086848 TCCTCTAAACCGAGGTACC
65 TCCTCTAAACAGAGGTACC
24086867 ACGACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGGTACCACGACTTTGGAAAAATAAATTGCT
1 ACGACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGGTACCACGACTTTGGAAAAATAAATTGCT
24086932 CCTCTAAACAGAGGTACC
66 CCTCTAAACAGAGGTACC
*
24086950 ACGACTTTGAAAAGTAAATTGCTCCTCTCAACAAAGGTACCACGACTTTGGAAAAATAAATTGCT
1 ACGACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGGTACCACGACTTTGGAAAAATAAATTGCT
24087015 CCTCTAAACAGAGGTACC
66 CCTCTAAACAGAGGTACC
*
24087033 ACGACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGG--CAACGAACTTTGGAAA
1 ACGACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGGTACCACG-ACTTTGGAAA
24087086 GTAAATACTC
Statistics
Matches: 288, Mismatches: 11, Indels: 12
0.93 0.04 0.04
Matches are distributed among these distances:
81 4 0.01
82 31 0.11
83 197 0.68
84 5 0.02
85 3 0.01
86 3 0.01
87 45 0.16
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (83 bp):
ACGACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGGTACCACGACTTTGGAAAAATAAATTGCT
CCTCTAAACAGAGGTACC
Found at i:24088150 original size:26 final size:24
Alignment explanation
Indices: 24088108--24088197 Score: 103
Period size: 26 Copynumber: 3.7 Consensus size: 24
24088098 TCCTTTTTCA
* *
24088108 TTCACTTTTTCTTTTTTCCATTTT
1 TTCATTTTTTCATTTTTCCATTTT
*
24088132 TTCATTTTTTCATCATTTTTCATTTT
1 TTCATTTTTTCAT--TTTTCCATTTT
24088158 TTCATTTTTTCATTTTTCTCA-TTT
1 TTCATTTTTTCATTTTTC-CATTTT
*
24088182 TT-ATTTTTTTATTTTT
1 TTCATTTTTTCATTTTT
24088198 TTTTCAAGCA
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
23 13 0.22
24 20 0.34
25 2 0.03
26 23 0.40
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.73
Consensus pattern (24 bp):
TTCATTTTTTCATTTTTCCATTTT
Found at i:24088158 original size:34 final size:33
Alignment explanation
Indices: 24088101--24088198 Score: 130
Period size: 34 Copynumber: 2.9 Consensus size: 33
24088091 TGAGTCCTCC
24088101 TTTTTCATTCACTTTTTC-TTTTTTCCATTTTTTCA
1 TTTTTCA-TCA-TTTTTCATTTTTT-CATTTTTTCA
24088136 TTTTTTCATCATTTTTCATTTTTTCATTTTTTCA
1 -TTTTTCATCATTTTTCATTTTTTCATTTTTTCA
*
24088170 TTTTTC-TCATTTTT-ATTTTTTTATTTTTT
1 TTTTTCATCATTTTTCATTTTTTCATTTTTT
24088199 TTTCAAGCAT
Statistics
Matches: 60, Mismatches: 1, Indels: 7
0.88 0.01 0.10
Matches are distributed among these distances:
31 14 0.23
32 8 0.13
33 6 0.10
34 16 0.27
35 9 0.15
36 7 0.12
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.73
Consensus pattern (33 bp):
TTTTTCATCATTTTTCATTTTTTCATTTTTTCA
Found at i:24088199 original size:8 final size:8
Alignment explanation
Indices: 24088108--24088198 Score: 107
Period size: 8 Copynumber: 11.2 Consensus size: 8
24088098 TCCTTTTTCA
*
24088108 TTCACTTT
1 TTCATTTT
24088116 TTC-TTTT
1 TTCATTTT
24088123 TTCCATTTT
1 TT-CATTTT
24088132 TTCATTTT
1 TTCATTTT
24088140 TTCATCATTT
1 TTCAT--TTT
24088150 TTCATTTT
1 TTCATTTT
24088158 TTCATTTT
1 TTCATTTT
24088166 TTCATTTT
1 TTCATTTT
24088174 TCTCA-TTT
1 T-TCATTTT
24088182 TT-ATTTT
1 TTCATTTT
*
24088189 TTTATTTT
1 TTCATTTT
24088197 TT
1 TT
24088199 TTTCAAGCAT
Statistics
Matches: 75, Mismatches: 1, Indels: 14
0.83 0.01 0.16
Matches are distributed among these distances:
6 1 0.01
7 11 0.15
8 46 0.61
9 9 0.12
10 8 0.11
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.74
Consensus pattern (8 bp):
TTCATTTT
Found at i:24093111 original size:15 final size:14
Alignment explanation
Indices: 24093087--24093116 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
24093077 TCTTTCTCCT
24093087 TCTTTAGCCTTCTC
1 TCTTTAGCCTTCTC
24093101 TCTTCTAGCCTTCTC
1 TCTT-TAGCCTTCTC
24093116 T
1 T
24093117 AGCATTTCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.07, C:0.37, G:0.07, T:0.50
Consensus pattern (14 bp):
TCTTTAGCCTTCTC
Found at i:24098666 original size:156 final size:156
Alignment explanation
Indices: 24098400--24098992 Score: 993
Period size: 156 Copynumber: 3.8 Consensus size: 156
24098390 GTTAGTTGTT
*
24098400 GAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAAG
1 GAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGG
*
24098465 AGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTATTTAAAGAAAAAT
66 AGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAT
24098530 CAAGATCAACCAATTAATTAATTATC
131 CAAGATCAACCAATTAATTAATTATC
24098556 GAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGG
1 GAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGG
24098621 AGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAG-AAAAT
66 AGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAT
24098685 C-AGATCAACCAATTAATT-ATTATC
131 CAAGATCAACCAATTAATTAATTATC
24098709 GAAAATTATTCTC-ATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTTCACCTCAG
1 GAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCC-TCACCTCAG
24098773 GAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAA
65 GAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAG-----
* *
24098838 AAAAATCAA-ATCAGCCAAGTAATTAATTA-C
125 AAAAATCAAGATCAACCAATTAATTAATTATC
*
24098868 GGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGG
1 GAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGG
* *
24098933 AGTATGCAAGAAAAACTACTGTTTATTTACTTGTAGAGGC-CCGTCGTCGGATTAATTAAA
66 AGTATGCAAGAAAAACTACTG--T-TTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAA
24098993 AATAAAAACG
Statistics
Matches: 417, Mismatches: 7, Indels: 21
0.94 0.02 0.05
Matches are distributed among these distances:
152 41 0.10
153 88 0.21
154 17 0.04
155 6 0.01
156 122 0.29
159 63 0.15
160 46 0.11
161 21 0.05
162 13 0.03
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (156 bp):
GAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGG
AGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAT
CAAGATCAACCAATTAATTAATTATC
Found at i:24100634 original size:156 final size:156
Alignment explanation
Indices: 24100368--24100966 Score: 1072
Period size: 156 Copynumber: 3.8 Consensus size: 156
24100358 GTTAGTTGTT
*
24100368 GAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAAG
1 GAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGG
* *
24100433 AGTATACAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTATTTAAAGAAAAAT
66 AGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAT
24100498 CAAGATCAACCAATTAATTAATTATC
131 CAAGATCAACCAATTAATTAATTATC
24100524 GAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGG
1 GAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGG
24100589 AGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAT
66 AGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAT
24100654 CAAGATCAACCAATTAATTAATTATC
131 CAAGATCAACCAATTAATTAATTATC
24100680 GAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGG
1 GAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGG
24100745 AGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAA
66 AGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAG----AA
* * *
24100810 AAATCAAAATCAGCCAAGTAATTAATTATC
127 AAATCAAGATCAACCAATTAATTAATTATC
*
24100840 GGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGG
1 GAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGG
* *
24100905 AGTATGCAAGAAAAACTACTGTTTTTACTTGTAGAGGCTCCGTCGTCGGATTAATTAAAGAA
66 AGTATGCAAGAAAAACTACTG-TTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAGAA
24100967 TAAAGAAAAA
Statistics
Matches: 429, Mismatches: 9, Indels: 9
0.96 0.02 0.02
Matches are distributed among these distances:
156 277 0.65
157 2 0.00
160 114 0.27
161 36 0.08
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (156 bp):
GAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCCCTCACCTCAGG
AGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAATTAAAGAAAAAT
CAAGATCAACCAATTAATTAATTATC
Found at i:24101018 original size:16 final size:15
Alignment explanation
Indices: 24100972--24101040 Score: 56
Period size: 12 Copynumber: 4.6 Consensus size: 15
24100962 AAGAATAAAG
24100972 AAAAAAAAATCAAGAT
1 AAAAAAAAATCAA-AT
* *
24100988 CAAAATCAAAGTCAAAT
1 -AAAA-AAAAATCAAAT
24101005 AAAAAAAAATTCAAA-
1 AAAAAAAAA-TCAAAT
24101020 AAAAAAAAA--AAA-
1 AAAAAAAAATCAAAT
24101032 AAAAAAAAA
1 AAAAAAAAA
24101041 ACCTGGAGCG
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
12 12 0.26
15 12 0.26
16 9 0.20
17 6 0.13
18 7 0.15
ACGTcount: A:0.80, C:0.07, G:0.03, T:0.10
Consensus pattern (15 bp):
AAAAAAAAATCAAAT
Found at i:24101021 original size:1 final size:1
Alignment explanation
Indices: 24101017--24101041 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
24101007 AAAAAAATTC
24101017 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
24101042 CCTGGAGCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:24101342 original size:19 final size:19
Alignment explanation
Indices: 24101320--24101357 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
24101310 GGTGCCGAAT
24101320 TCTGGAAAATTCGCCGGAA
1 TCTGGAAAATTCGCCGGAA
* *
24101339 TCTGGGAATTTCGCCGGAA
1 TCTGGAAAATTCGCCGGAA
24101358 ATTGGCCGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (19 bp):
TCTGGAAAATTCGCCGGAA
Found at i:24102152 original size:20 final size:20
Alignment explanation
Indices: 24102130--24102194 Score: 94
Period size: 20 Copynumber: 3.2 Consensus size: 20
24102120 TTGCCCATTT
* *
24102130 GGGCCAGGCCCAAATGATCT
1 GGGCCAGGCCCAATTGATCC
*
24102150 GGGTCAGGCCCAATTGATCC
1 GGGCCAGGCCCAATTGATCC
*
24102170 GGGTCAGGCCCAATTGATCC
1 GGGCCAGGCCCAATTGATCC
24102190 GGGCC
1 GGGCC
24102195 CGGACCTGAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.20, C:0.31, G:0.32, T:0.17
Consensus pattern (20 bp):
GGGCCAGGCCCAATTGATCC
Found at i:24103540 original size:20 final size:19
Alignment explanation
Indices: 24103515--24103558 Score: 70
Period size: 20 Copynumber: 2.3 Consensus size: 19
24103505 AAAAATTAAA
*
24103515 TTATATATTTTTATTAATTT
1 TTATATATTTTT-TAAATTT
24103535 TTATATATTTTTTAAATTT
1 TTATATATTTTTTAAATTT
24103554 TTATA
1 TTATA
24103559 AAAAATAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
TTATATATTTTTTAAATTT
Found at i:24103560 original size:10 final size:10
Alignment explanation
Indices: 24103515--24103560 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
24103505 AAAAATTAAA
*
24103515 TTATATATTT
1 TTATAAATTT
*
24103525 TTATTAATTT
1 TTATAAATTT
*
24103535 TTATATATTT
1 TTATAAATTT
24103545 TT-TAAATTT
1 TTATAAATTT
24103554 TTATAAA
1 TTATAAA
24103561 AAATAATTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
9 8 0.27
10 22 0.73
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
TTATAAATTT
Found at i:24103972 original size:14 final size:14
Alignment explanation
Indices: 24103953--24104002 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 14
24103943 CTTCGAATGA
24103953 GTTTTTTCATACAT
1 GTTTTTTCATACAT
*
24103967 GTTTTTTCAGATTCGA-
1 GTTTTTTC--ATAC-AT
24103983 GTTTTTTCATACAT
1 GTTTTTTCATACAT
24103997 -TTTTTT
1 GTTTTTT
24104003 TTTCAAGTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
13 7 0.23
14 11 0.37
16 11 0.37
17 1 0.03
ACGTcount: A:0.18, C:0.12, G:0.10, T:0.60
Consensus pattern (14 bp):
GTTTTTTCATACAT
Found at i:24107210 original size:2 final size:2
Alignment explanation
Indices: 24107203--24107236 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
24107193 CTATCAGAGA
24107203 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24107237 TCTTGTCTAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:24107961 original size:3 final size:3
Alignment explanation
Indices: 24107953--24107978 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
24107943 ATGTTCTCAA
24107953 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
24107979 AAAGTTTACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:24111152 original size:28 final size:26
Alignment explanation
Indices: 24111087--24111152 Score: 71
Period size: 30 Copynumber: 2.4 Consensus size: 26
24111077 CATATTTTGC
24111087 AAATATAA-AATCTAAAAATTATATG
1 AAATATAATAATCTAAAAATTATATG
*
24111112 AATATACCTAATAATCTCAAATATTATATG
1 AA-ATA--TAATAATCT-AAAAATTATATG
24111142 ATAATATAATA
1 A-AATATAATA
24111153 TAAAAATAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
25 2 0.06
26 3 0.09
28 8 0.24
29 5 0.15
30 15 0.44
31 1 0.03
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.35
Consensus pattern (26 bp):
AAATATAATAATCTAAAAATTATATG
Found at i:24111163 original size:16 final size:16
Alignment explanation
Indices: 24111142--24111173 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
24111132 ATATTATATG
24111142 ATAATATAATATAAAA
1 ATAATATAATATAAAA
*
24111158 ATAATATAATTTAAAA
1 ATAATATAATATAAAA
24111174 TTTTAATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
ATAATATAATATAAAA
Found at i:24111898 original size:37 final size:37
Alignment explanation
Indices: 24111857--24111933 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
24111847 ATTTATTTTG
*
24111857 AATTTAATTTAATTTTATAAAT-TTAATATTTAAAT-TT
1 AATTTAATTTAATATTA-AAATATTAAT-TTTAAATCTT
* *
24111894 AATTTGATTTAATATTAAAATATTAATTTTATATCTT
1 AATTTAATTTAATATTAAAATATTAATTTTAAATCTT
24111931 AAT
1 AAT
24111934 CGACTCAACT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 10 0.29
37 25 0.71
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.55
Consensus pattern (37 bp):
AATTTAATTTAATATTAAAATATTAATTTTAAATCTT
Found at i:24111907 original size:23 final size:24
Alignment explanation
Indices: 24111877--24111922 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
24111867 AATTTTATAA
*
24111877 ATTTAATATTTAAAT-TTAATTTG
1 ATTTAATATTAAAATATTAATTTG
24111900 ATTTAATATTAAAATATTAATTT
1 ATTTAATATTAAAATATTAATTT
24111923 TATATCTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (24 bp):
ATTTAATATTAAAATATTAATTTG
Found at i:24111970 original size:26 final size:28
Alignment explanation
Indices: 24111941--24111992 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
24111931 AATCGACTCA
24111941 ACTTTCATATG-TTT-AAATTCATAATC
1 ACTTTCATATGATTTAAAATTCATAATC
* *
24111967 ACTTTGATTTGATTTAAAATTCATAA
1 ACTTTCATATGATTTAAAATTCATAA
24111993 AATATTAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 9 0.41
27 3 0.14
28 10 0.45
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.46
Consensus pattern (28 bp):
ACTTTCATATGATTTAAAATTCATAATC
Found at i:24115165 original size:22 final size:23
Alignment explanation
Indices: 24115121--24115166 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
24115111 AAAATTTAAT
*
24115121 TTTTATAAATAAGGTATTATTTA
1 TTTTATAAATAAAGTATTATTTA
* *
24115144 TTTTATAAA-AAATTATTTTTTA
1 TTTTATAAATAAAGTATTATTTA
24115166 T
1 T
24115167 ACAATCATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (23 bp):
TTTTATAAATAAAGTATTATTTA
Found at i:24119079 original size:13 final size:14
Alignment explanation
Indices: 24119058--24119108 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
24119048 TTAATATAAT
24119058 AAATATAAATAAAA
1 AAATATAAATAAAA
24119072 AAAT-TAAATAAAA
1 AAATATAAATAAAA
* * *
24119085 AATTATAAATTATA
1 AAATATAAATAAAA
*
24119099 AATTATAAAT
1 AAATATAAAT
24119109 TTATCATGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
13 12 0.36
14 21 0.64
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
AAATATAAATAAAA
Found at i:24119086 original size:12 final size:12
Alignment explanation
Indices: 24119047--24119089 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 12
24119037 TAATAATTTT
*
24119047 ATTAATATAATAA
1 ATTAA-ATAAAAA
24119060 ATATAAATAAAAAA
1 AT-TAAAT-AAAAA
24119074 ATTAAATAAAAA
1 ATTAAATAAAAA
24119086 ATTA
1 ATTA
24119090 TAAATTATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
12 9 0.33
13 9 0.33
14 9 0.33
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (12 bp):
ATTAAATAAAAA
Found at i:24119094 original size:7 final size:7
Alignment explanation
Indices: 24119084--24119109 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
24119074 ATTAAATAAA
24119084 AAATTAT
1 AAATTAT
24119091 AAATTAT
1 AAATTAT
24119098 AAATTAT
1 AAATTAT
24119105 AAATT
1 AAATT
24119110 TATCATGTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
AAATTAT
Found at i:24120699 original size:2 final size:2
Alignment explanation
Indices: 24120694--24120718 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
24120684 GCAAGTTATG
24120694 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
24120719 GAGGATAGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:24120833 original size:3 final size:3
Alignment explanation
Indices: 24120825--24120858 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
24120815 TCTGAATTAT
*
24120825 AGA AGA AGA AGA AGA AGA AGA AGA AAA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
24120859 ATGCCTTAGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:24121112 original size:28 final size:28
Alignment explanation
Indices: 24121080--24121152 Score: 137
Period size: 28 Copynumber: 2.6 Consensus size: 28
24121070 AAATAATTGT
*
24121080 CCCTGAACTCACAGATAACACATCTAGG
1 CCCTGAACTCACAGACAACACATCTAGG
24121108 CCCTGAACTCACAGACAACACATCTAGG
1 CCCTGAACTCACAGACAACACATCTAGG
24121136 CCCTGAACTCACAGACA
1 CCCTGAACTCACAGACA
24121153 TCTAGGTATC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.36, C:0.36, G:0.14, T:0.15
Consensus pattern (28 bp):
CCCTGAACTCACAGACAACACATCTAGG
Found at i:24121951 original size:31 final size:31
Alignment explanation
Indices: 24121916--24121982 Score: 134
Period size: 31 Copynumber: 2.2 Consensus size: 31
24121906 CAATGAAAAT
24121916 GAGCAACCAAATGACAATATGTTCACATCAA
1 GAGCAACCAAATGACAATATGTTCACATCAA
24121947 GAGCAACCAAATGACAATATGTTCACATCAA
1 GAGCAACCAAATGACAATATGTTCACATCAA
24121978 GAGCA
1 GAGCA
24121983 CCTACTCTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.45, C:0.22, G:0.15, T:0.18
Consensus pattern (31 bp):
GAGCAACCAAATGACAATATGTTCACATCAA
Found at i:24132246 original size:13 final size:13
Alignment explanation
Indices: 24132224--24132255 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
24132214 AATATGATGT
*
24132224 AAATACAATATAA
1 AAATAAAATATAA
24132237 AAATAAAATATAA
1 AAATAAAATATAA
24132250 AAATAA
1 AAATAA
24132256 TTTAATTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (13 bp):
AAATAAAATATAA
Found at i:24134189 original size:28 final size:30
Alignment explanation
Indices: 24134150--24134210 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 30
24134140 TTTTAAAATC
24134150 TAAACTATTAAATTA-AAT-CAAATATAAA
1 TAAACTATTAAATTATAATACAAATATAAA
24134178 TAAA-TATATAAATTATTAATACCAAATATAAA
1 TAAACTAT-TAAATTA-TAATA-CAAATATAAA
24134210 T
1 T
24134211 CCGCTTCAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
27 3 0.11
28 11 0.39
30 3 0.11
32 11 0.39
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (30 bp):
TAAACTATTAAATTATAATACAAATATAAA
Found at i:24138770 original size:22 final size:22
Alignment explanation
Indices: 24138715--24138781 Score: 59
Period size: 22 Copynumber: 3.0 Consensus size: 22
24138705 ATCTTATTTT
24138715 ATATATATATTTAAA-AA-ATAAA
1 ATAT-TAT-TTTAAATAATATAAA
*
24138737 AT-TTTTTATTAAATAATATAAA
1 ATATTATT-TTAAATAATATAAA
24138759 ATATTATTTTAAATTAATTATAA
1 ATATTATTTTAAA-TAA-TATAA
24138782 TTAATATATT
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 1 0.03
20 7 0.19
21 3 0.08
22 14 0.38
23 7 0.19
24 5 0.14
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
ATATTATTTTAAATAATATAAA
Found at i:24139143 original size:18 final size:19
Alignment explanation
Indices: 24139120--24139160 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
24139110 AATCAAATTA
*
24139120 TATATATATTTT-AGTTTT
1 TATATATATTTTAAATTTT
24139138 TATATATATTTTAAATTTT
1 TATATATATTTTAAATTTT
24139157 TATA
1 TATA
24139161 AAATAAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (19 bp):
TATATATATTTTAAATTTT
Found at i:24139214 original size:11 final size:10
Alignment explanation
Indices: 24139179--24139229 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
24139169 TTAATAATTT
24139179 TATATTAAAA
1 TATATTAAAA
* *
24139189 TCTATTTAAA
1 TATATTAAAA
24139199 TATATTAAAA
1 TATATTAAAA
24139209 TAATATATAAAA
1 T-ATAT-TAAAA
24139221 -AT-TTAAAA
1 TATATTAAAA
24139229 T
1 T
24139230 TTAAAAATCG
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
8 5 0.15
9 1 0.03
10 19 0.56
11 4 0.12
12 5 0.15
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (10 bp):
TATATTAAAA
Found at i:24152050 original size:11 final size:11
Alignment explanation
Indices: 24152034--24152075 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
24152024 AATTTCTTAA
24152034 GAGATTTGTTT
1 GAGATTTGTTT
*
24152045 GAGATTTGTTA
1 GAGATTTGTTT
*
24152056 GAGATTTATTT
1 GAGATTTGTTT
24152067 GAGATTTGT
1 GAGATTTGT
24152076 CAGATATTGC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:24152058 original size:22 final size:22
Alignment explanation
Indices: 24152033--24152075 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
24152023 AAATTTCTTA
*
24152033 AGAGATTTGTTTGAGATTTGTT
1 AGAGATTTATTTGAGATTTGTT
24152055 AGAGATTTATTTGAGATTTGT
1 AGAGATTTATTTGAGATTTGT
24152076 CAGATATTGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.49
Consensus pattern (22 bp):
AGAGATTTATTTGAGATTTGTT
Found at i:24152180 original size:52 final size:52
Alignment explanation
Indices: 24152100--24152256 Score: 185
Period size: 52 Copynumber: 3.0 Consensus size: 52
24152090 TGGACAAGAA
* *
24152100 GACTTACAAAAGAAGAATTCTAAGAGAAAGAAGATTCTTAATAGGTAAGTTT
1 GACTTACAAGAGAAGAATTCTAAGAGAAAGAGGATTCTTAATAGGTAAGTTT
** * * *
24152152 GACTTGTAAGAGAAGAATTCTAAAAGAAA-AGGAATTTTTAATAGGCAAGTTT
1 GACTTACAAGAGAAGAATTCTAAGAGAAAGAGG-ATTCTTAATAGGTAAGTTT
* *
24152204 GACTTACAGGAGAAGAATTCTAAGAG-GAGAGGGATTCTTAAT-GGTCAAGTTT
1 GACTTACAAGAGAAGAATTCTAAGAGAAAGA-GGATTCTTAATAGGT-AAGTTT
24152256 G
1 G
24152257 TATGGTTATA
Statistics
Matches: 87, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
51 5 0.06
52 80 0.92
53 2 0.02
ACGTcount: A:0.41, C:0.08, G:0.24, T:0.27
Consensus pattern (52 bp):
GACTTACAAGAGAAGAATTCTAAGAGAAAGAGGATTCTTAATAGGTAAGTTT
Found at i:24152421 original size:19 final size:19
Alignment explanation
Indices: 24152399--24152435 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
24152389 TTTGTGAGTG
24152399 GACTAGAGGAGACTGAGAT
1 GACTAGAGGAGACTGAGAT
24152418 GACTAGAGGAGACTGAGA
1 GACTAGAGGAGACTGAGA
24152436 GGGTCCACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.11, G:0.38, T:0.14
Consensus pattern (19 bp):
GACTAGAGGAGACTGAGAT
Found at i:24152799 original size:31 final size:31
Alignment explanation
Indices: 24152761--24152827 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
24152751 AGGCTTTTAG
*
24152761 CCCAACAAATGATATCAAAGTTGTGGTAATC
1 CCCAACAAATGATATCAAAGCTGTGGTAATC
* * **
24152792 CCCAACAAATGGTATCAGAGCTGTGGTGTTC
1 CCCAACAAATGATATCAAAGCTGTGGTAATC
24152823 CCCAA
1 CCCAA
24152828 TAACTCTCTT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (31 bp):
CCCAACAAATGATATCAAAGCTGTGGTAATC
Found at i:24153306 original size:27 final size:27
Alignment explanation
Indices: 24153272--24153325 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
24153262 TCGTATCTTT
24153272 TATTTATGTTGTATTAATATCATATCA
1 TATTTATGTTGTATTAATATCATATCA
*
24153299 TATTTATGTTGTATTCATATCATATCA
1 TATTTATGTTGTATTAATATCATATCA
24153326 CTATCGTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.09, G:0.07, T:0.52
Consensus pattern (27 bp):
TATTTATGTTGTATTAATATCATATCA
Found at i:24153859 original size:19 final size:19
Alignment explanation
Indices: 24153823--24153861 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
24153813 AAATATTATT
** *
24153823 TATAATAATATTTTATTAA
1 TATAATAATACATAATTAA
24153842 TATAATAATACATAATTAA
1 TATAATAATACATAATTAA
24153861 T
1 T
24153862 GTTACAAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (19 bp):
TATAATAATACATAATTAA
Found at i:24159455 original size:18 final size:18
Alignment explanation
Indices: 24159434--24159479 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
24159424 CAAGAAAGAT
*
24159434 GACGCCGGTGAGAAAAAA
1 GACGCCGGAGAGAAAAAA
* *
24159452 GACGGCGGAGAGAAGAAA
1 GACGCCGGAGAGAAAAAA
*
24159470 GACACCGGAG
1 GACGCCGGAG
24159480 GTGATAATAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.41, C:0.17, G:0.39, T:0.02
Consensus pattern (18 bp):
GACGCCGGAGAGAAAAAA
Found at i:24159570 original size:24 final size:24
Alignment explanation
Indices: 24159539--24159603 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 24
24159529 GGAAGGAGGT
24159539 GGAG-AAAAGAAAGAAGGCGGCGG
1 GGAGAAAAAGAAAGAAGGCGGCGG
24159562 GGAGAAAAAG---GAAGGCGGCGG
1 GGAGAAAAAGAAAGAAGGCGGCGG
* * *
24159583 AGAGAAGAAGAAAGATGGCGG
1 GGAGAAAAAGAAAGAAGGCGG
24159604 TGAGAAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
21 19 0.54
23 4 0.11
24 12 0.34
ACGTcount: A:0.43, C:0.08, G:0.48, T:0.02
Consensus pattern (24 bp):
GGAGAAAAAGAAAGAAGGCGGCGG
Found at i:24159573 original size:42 final size:42
Alignment explanation
Indices: 24159521--24159660 Score: 124
Period size: 42 Copynumber: 3.3 Consensus size: 42
24159511 TGCGGTTGGC
* * *
24159521 GAGAAGAAGGAAGGAGGTGGAGAAAAGAAAGAAGGCGGCGGG
1 GAGAAAAAAGAAGGAGGCGGAGAAAAGAAAGAAGGCGGCGGG
* * * ** *
24159563 GAGAAAAAGGAAGGCGGCGGAGAGAAG-AAGAAAGATGGCGGT
1 GAGAAAAAAGAAGGAGGCGGAGAAAAGAAAG-AAGGCGGCGGG
* * *
24159605 GAGAAAAAAGAA-GATGGCGGTGAGAAA-AAGGAGGGCGGCGGG
1 GAGAAAAAAGAAGGA-GGCGGAGA-AAAGAAAGAAGGCGGCGGG
24159647 GAGAAAAAAGAAGG
1 GAGAAAAAAGAAGG
24159661 TGACGGTGGT
Statistics
Matches: 77, Mismatches: 16, Indels: 9
0.75 0.16 0.09
Matches are distributed among these distances:
41 4 0.05
42 68 0.88
43 5 0.06
ACGTcount: A:0.44, C:0.06, G:0.46, T:0.04
Consensus pattern (42 bp):
GAGAAAAAAGAAGGAGGCGGAGAAAAGAAAGAAGGCGGCGGG
Found at i:24159575 original size:21 final size:21
Alignment explanation
Indices: 24159551--24159660 Score: 112
Period size: 21 Copynumber: 5.2 Consensus size: 21
24159541 AGAAAAGAAA
24159551 GAAGGCGGCGGGGAGAAAAAG
1 GAAGGCGGCGGGGAGAAAAAG
* *
24159572 GAAGGCGGCGGAGAGAAGAAG
1 GAAGGCGGCGGGGAGAAAAAG
* ** * *
24159593 AAAGATGGCGGTGAGAAAAAA
1 GAAGGCGGCGGGGAGAAAAAG
** *
24159614 GAAGATGGCGGTGAGAAAAAG
1 GAAGGCGGCGGGGAGAAAAAG
* *
24159635 GAGGGCGGCGGGGAGAAAAAA
1 GAAGGCGGCGGGGAGAAAAAG
24159656 GAAGG
1 GAAGG
24159661 TGACGGTGGT
Statistics
Matches: 73, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 73 1.00
ACGTcount: A:0.42, C:0.07, G:0.47, T:0.04
Consensus pattern (21 bp):
GAAGGCGGCGGGGAGAAAAAG
Found at i:24159589 original size:63 final size:63
Alignment explanation
Indices: 24159521--24159660 Score: 158
Period size: 63 Copynumber: 2.2 Consensus size: 63
24159511 TGCGGTTGGC
* *
24159521 GAGAAGAAGGAAGGA-GGTGGAGA-AAAGAAAGAAGGCGGCGGGGAGAAAAAGGAAGGCGGCGGA
1 GAGAAGAA-GAAGGATGGCGGAGAGAAA-AAAGAAGACGGCGGGGAGAAAAAGGAAGGCGGCGGA
* * * * * *
24159584 GAGAAGAAGAAAGATGGCGGTGAGAAAAAAGAAGATGGCGGTGAGAAAAAGGAGGGCGGCGGG
1 GAGAAGAAGAAGGATGGCGGAGAGAAAAAAGAAGACGGCGGGGAGAAAAAGGAAGGCGGCGGA
*
24159647 GAGAAAAAAGAAGG
1 GAG-AAGAAGAAGG
24159661 TGACGGTGGT
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
62 5 0.08
63 48 0.75
64 11 0.17
ACGTcount: A:0.44, C:0.06, G:0.46, T:0.04
Consensus pattern (63 bp):
GAGAAGAAGAAGGATGGCGGAGAGAAAAAAGAAGACGGCGGGGAGAAAAAGGAAGGCGGCGGA
Found at i:24159668 original size:42 final size:42
Alignment explanation
Indices: 24159548--24159668 Score: 136
Period size: 42 Copynumber: 2.9 Consensus size: 42
24159538 TGGAGAAAAG
* * *
24159548 AAAG-AAGGCGGCGGGGAGAAAAAGGAAGGCGGCGGAGAGAA
1 AAAGAAAGGCGGCGGGGAGAAAAAAGAAGGTGGCGGTGAGAA
* ** * *
24159589 GAAGAAAGATGGCGGTGAGAAAAAAGAAGATGGCGGTGAGAA
1 AAAGAAAGGCGGCGGGGAGAAAAAAGAAGGTGGCGGTGAGAA
* * *
24159631 AAAGGAGGGCGGCGGGGAGAAAAAAGAAGGTGACGGTG
1 AAAGAAAGGCGGCGGGGAGAAAAAAGAAGGTGGCGGTG
24159669 GTGAAGCTAA
Statistics
Matches: 63, Mismatches: 16, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
41 3 0.05
42 60 0.95
ACGTcount: A:0.41, C:0.07, G:0.46, T:0.05
Consensus pattern (42 bp):
AAAGAAAGGCGGCGGGGAGAAAAAAGAAGGTGGCGGTGAGAA
Found at i:24159836 original size:18 final size:18
Alignment explanation
Indices: 24159813--24159856 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
24159803 GAGTACGGAT
24159813 ACATGAATCATCCTGGGG
1 ACATGAATCATCCTGGGG
**
24159831 ACATGAATCATCCTGGTT
1 ACATGAATCATCCTGGGG
24159849 ACATGAAT
1 ACATGAAT
24159857 ATGAATCAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.27
Consensus pattern (18 bp):
ACATGAATCATCCTGGGG
Found at i:24162284 original size:2 final size:2
Alignment explanation
Indices: 24162279--24162308 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
24162269 ATATGCATGC
24162279 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24162309 GACATCTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:24167340 original size:202 final size:199
Alignment explanation
Indices: 24166955--24167351 Score: 505
Period size: 202 Copynumber: 2.0 Consensus size: 199
24166945 TATTAATGTA
* *
24166955 GGTTTAAGGTAACCTCTAGGATTATATTTTAACTGATTTTATTTAACTATTAGCTTAATTTTACA
1 GGTTTAAGGTAACCTCTAGGATTATATTTTAACTGATTTTATCTAACTATTAGCTCAATTTTACA
* * * *
24167020 GAGATGGCTAGCAATAATGACTTTGACTTCGGGTTGTACTAGCATGCCTTTAGGCCCAAAAAAAG
66 AAGATGGCTAGCAATAATGACTTTGACTTCAGGTTGTACCAGCATGCCTTTAGGACCAAAAAAAG
* * *
24167085 GCCAAAAGAAAATTCAACTCGAGACCCTGTCTTGTAGGAGAAACAATGTCATTAATACCTGTATT
131 GCCAAAAGAAAATTCAACTCAAGACCCTATCTTGTAGGAG-AACAAGGTCATTAATACCT-TATT
24167150 AGGGTG
194 AGGGTG
* *
24167156 GGTTTAAGGTAACCTCATATGAGTT-TATTTTAACCTGATTTTATCTAACTATTAGCTCGATTTT
1 GGTTTAAGGTAACCTC-TAGGA-TTATATTTTAA-CTGATTTTATCTAACTATTAGCTCAATTTT
** * * * * * **
24167220 GTAAAGATGGCTAGTAATGATGACTTTGGCTTTAGGTTGTACCAGTATG-CTTTCA-GACTTAAA
63 ACAAAGATGGCTAGCAATAATGACTTTGACTTCAGGTTGTACCAGCATGCCTTT-AGGACCAAAA
*
24167283 AAGGGCCAAAAGAAAATTCAACTCAAGACCCTATCTTGTAAAGGAG-ACAAGGTCATTAATACCT
127 AAAGGCCAAAAGAAAATTCAACTCAAGACCCTATCTTGT--AGGAGAACAAGGTCATTAATACCT
24167347 TATTA
190 TATTA
24167352 CATTACTATT
Statistics
Matches: 169, Mismatches: 21, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
201 21 0.12
202 74 0.44
203 69 0.41
204 5 0.03
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (199 bp):
GGTTTAAGGTAACCTCTAGGATTATATTTTAACTGATTTTATCTAACTATTAGCTCAATTTTACA
AAGATGGCTAGCAATAATGACTTTGACTTCAGGTTGTACCAGCATGCCTTTAGGACCAAAAAAAG
GCCAAAAGAAAATTCAACTCAAGACCCTATCTTGTAGGAGAACAAGGTCATTAATACCTTATTAG
GGTG
Found at i:24175654 original size:11 final size:11
Alignment explanation
Indices: 24175632--24175680 Score: 62
Period size: 11 Copynumber: 4.2 Consensus size: 11
24175622 ATTGACAATT
24175632 TAAAACATAATA
1 TAAAA-ATAATA
24175644 TAAAAATAATA
1 TAAAAATAATA
24175655 TAAATAAATAATA
1 T-AA-AAATAATA
*
24175668 TATAAATAATA
1 TAAAAATAATA
24175679 TA
1 TA
24175681 GTTTAAAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
11 17 0.50
12 8 0.24
13 9 0.26
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (11 bp):
TAAAAATAATA
Found at i:24175670 original size:15 final size:15
Alignment explanation
Indices: 24175638--24175676 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 15
24175628 AATTTAAAAC
24175638 ATAATATAAAAATAAT
1 ATAA-ATAAAAATAAT
24175654 ATAAATAAATAAT-AT
1 ATAAATAAA-AATAAT
24175669 ATAAATAA
1 ATAAATAA
24175677 TATAGTTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 15 0.68
16 7 0.32
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
ATAAATAAAAATAAT
Found at i:24176965 original size:7 final size:7
Alignment explanation
Indices: 24176951--24177010 Score: 59
Period size: 7 Copynumber: 8.1 Consensus size: 7
24176941 TTAAATTATA
24176951 TTAT-TT
1 TTATATT
24176957 TTATATT
1 TTATATT
24176964 TTATATT
1 TTATATT
24176971 TTATATTT
1 TTATA-TT
*
24176979 ATTATCATA
1 -TTAT-ATT
24176988 TTATATT
1 TTATATT
*
24176995 TTAAATT
1 TTATATT
24177002 ATTATATT
1 -TTATATT
24177010 T
1 T
24177011 AAATGGAGGA
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
6 4 0.09
7 23 0.51
8 12 0.27
9 5 0.11
10 1 0.02
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.67
Consensus pattern (7 bp):
TTATATT
Found at i:24176970 original size:15 final size:14
Alignment explanation
Indices: 24176951--24177010 Score: 59
Period size: 15 Copynumber: 4.1 Consensus size: 14
24176941 TTAAATTATA
24176951 TTAT-TTTTATATT
1 TTATATTTTATATT
24176964 TTATATTTTATATTT
1 TTATATTTTATA-TT
*
24176979 ATTATCATATTATATT
1 -TTAT-ATTTTATATT
*
24176995 TTAAATTATTATATT
1 TTATATT-TTATATT
24177010 T
1 T
24177011 AAATGGAGGA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
13 4 0.10
14 9 0.23
15 13 0.33
16 6 0.15
17 7 0.18
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.67
Consensus pattern (14 bp):
TTATATTTTATATT
Found at i:24177006 original size:26 final size:25
Alignment explanation
Indices: 24176950--24177006 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 25
24176940 TTTAAATTAT
* * *
24176950 ATTATTTTTATATTTTATATTTTAT
1 ATTATTATTATATATTATATTTTAA
24176975 A-T-TTATTATCATATTATATTTTAA
1 ATTATTATTAT-ATATTATATTTTAA
24176999 ATTATTAT
1 ATTATTAT
24177007 ATTTAAATGG
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
23 6 0.23
24 14 0.54
25 2 0.08
26 4 0.15
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (25 bp):
ATTATTATTATATATTATATTTTAA
Found at i:24177013 original size:14 final size:15
Alignment explanation
Indices: 24176986--24177014 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
24176976 TTTATTATCA
24176986 TATTATATTTTAAAT
1 TATTATATTTTAAAT
24177001 TATTATA-TTTAAAT
1 TATTATATTTTAAAT
24177015 GGAGGAAAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TATTATATTTTAAAT
Found at i:24196165 original size:25 final size:24
Alignment explanation
Indices: 24196137--24196184 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
24196127 TCAATTCATA
* *
24196137 TATATATATAAATATAAATATAAAT
1 TATATATAAAAAT-TAAAAATAAAT
24196162 TATATATAAAAATTAAAAATAAA
1 TATATATAAAAATTAAAAATAAA
24196185 AATCATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (24 bp):
TATATATAAAAATTAAAAATAAAT
Found at i:24196169 original size:23 final size:24
Alignment explanation
Indices: 24196139--24196218 Score: 71
Period size: 24 Copynumber: 3.5 Consensus size: 24
24196129 AATTCATATA
24196139 TATATATAAATA-TAAATATAAAT
1 TATATATAAATAGTAAATATAAAT
* * *
24196162 TATATATAAAAATTAAAAATAAA-
1 TATATATAAATAGTAAATATAAAT
*
24196185 AATCATATAAA-AGTAAATATTAAAT
1 TAT-ATATAAATAGTAAATA-TAAAT
24196210 T-TA-ATAAAT
1 TATATATAAAT
24196219 TATATATTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
22 5 0.11
23 20 0.43
24 21 0.46
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (24 bp):
TATATATAAATAGTAAATATAAAT
Found at i:24196174 original size:13 final size:13
Alignment explanation
Indices: 24196137--24196193 Score: 53
Period size: 13 Copynumber: 4.5 Consensus size: 13
24196127 TCAATTCATA
*
24196137 TATATATATAAA-
1 TATATATAAAAAT
* *
24196149 TATAAATATAAAT
1 TATATATAAAAAT
24196162 TATATATAAAAAT
1 TATATATAAAAAT
* *
24196175 TAAAAATAAAAAT
1 TATATATAAAAAT
*
24196188 CATATA
1 TATATA
24196194 AAAGTAAATA
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
12 11 0.31
13 25 0.69
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (13 bp):
TATATATAAAAAT
Found at i:24202497 original size:21 final size:22
Alignment explanation
Indices: 24202460--24202507 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
24202450 AAAATTAAAA
*
24202460 AAAAAAATTCTTTGGATACTTT
1 AAAAAAATTCTTGGGATACTTT
*
24202482 AAAAAAATT-TTGGGATATTTT
1 AAAAAAATTCTTGGGATACTTT
*
24202503 TAAAA
1 AAAAA
24202508 GTTAAAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.46, C:0.04, G:0.10, T:0.40
Consensus pattern (22 bp):
AAAAAAATTCTTGGGATACTTT
Found at i:24202581 original size:19 final size:21
Alignment explanation
Indices: 24202559--24202602 Score: 60
Period size: 19 Copynumber: 2.3 Consensus size: 21
24202549 TTTTTTCGTC
24202559 AATAAAATTAT-TAT-ATATA
1 AATAAAATTATATATAATATA
24202578 AAT--AATTATATATAATATA
1 AATAAAATTATATATAATATA
24202597 AATAAA
1 AATAAA
24202603 TACCAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
17 6 0.29
18 3 0.14
19 11 0.52
21 1 0.05
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
AATAAAATTATATATAATATA
Found at i:24202585 original size:14 final size:14
Alignment explanation
Indices: 24202563--24202597 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
24202553 TTCGTCAATA
*
24202563 AAATTATTATATAT
1 AAATAATTATATAT
24202577 AAATAATTATATAT
1 AAATAATTATATAT
24202591 AATATAA
1 AA-ATAA
24202598 ATAAATACCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 15 0.79
15 4 0.21
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
AAATAATTATATAT
Found at i:24203280 original size:58 final size:59
Alignment explanation
Indices: 24203145--24203288 Score: 209
Period size: 59 Copynumber: 2.4 Consensus size: 59
24203135 GATTTAGATA
* * *
24203145 TTAAATTTGATTTTATTTTTTTAAATAATATATAAAATTATAAATTTTTAAAATTTGAT
1 TTAAATTTGAATTAATTTTTTTAAATAATATATAAAATTATAAATTTTTAAAATTCGAT
* * *
24203204 TTAGATTTGAATTGATTTTTTTAAATAATATATAATATTATAAATTTTTAAAATTCG-T
1 TTAAATTTGAATTAATTTTTTTAAATAATATATAAAATTATAAATTTTTAAAATTCGAT
*
24203262 TTAAATTTGAATCAATTTTTTTTAAAT
1 TTAAATTTGAATTAA-TTTTTTTAAAT
24203289 TGATTTTATT
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
58 13 0.17
59 63 0.83
ACGTcount: A:0.40, C:0.01, G:0.05, T:0.53
Consensus pattern (59 bp):
TTAAATTTGAATTAATTTTTTTAAATAATATATAAAATTATAAATTTTTAAAATTCGAT
Found at i:24203388 original size:22 final size:24
Alignment explanation
Indices: 24203351--24203394 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
24203341 AATTTTTTTT
*
24203351 ATTTTTATATATTATTTTAATAAA
1 ATTTTTATATATTATTTAAATAAA
24203375 ATTTTTA-ATA-TATTTAAATA
1 ATTTTTATATATTATTTAAATA
24203395 GATTTATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 3 0.16
24 7 0.37
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (24 bp):
ATTTTTATATATTATTTAAATAAA
Found at i:24203448 original size:18 final size:20
Alignment explanation
Indices: 24203425--24203467 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
24203415 AATTTTATTT
24203425 TATAAAAAT-T-TAAAAATA
1 TATAAAAATCTATAAAAATA
24203443 TAT-AAAATCTAATAAAAATA
1 TATAAAAATCT-ATAAAAATA
24203463 TATAA
1 TATAA
24203468 TTTAGTTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 5 0.24
18 4 0.19
20 11 0.52
21 1 0.05
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (20 bp):
TATAAAAATCTATAAAAATA
Found at i:24205846 original size:2 final size:2
Alignment explanation
Indices: 24205839--24205882 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
24205829 TATCTCTTCA
24205839 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24205881 AT
1 AT
24205883 CAATGCTTGG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:24209007 original size:16 final size:16
Alignment explanation
Indices: 24208976--24209027 Score: 79
Period size: 16 Copynumber: 3.2 Consensus size: 16
24208966 TGCTGCAGTC
24208976 TTAGAATAGG-AAGAA
1 TTAGAATAGGAAAGAA
24208991 TTAGAATAGGAAAGAA
1 TTAGAATAGGAAAGAA
24209007 TTAGAATAGGGAAAAGAA
1 TTAGAATA-GG-AAAGAA
24209025 TTA
1 TTA
24209028 CAGATGCTGA
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
15 10 0.29
16 13 0.38
17 2 0.06
18 9 0.26
ACGTcount: A:0.54, C:0.00, G:0.25, T:0.21
Consensus pattern (16 bp):
TTAGAATAGGAAAGAA
Found at i:24219469 original size:50 final size:52
Alignment explanation
Indices: 24219409--24219506 Score: 123
Period size: 50 Copynumber: 1.9 Consensus size: 52
24219399 TTTTAAATTG
* *
24219409 AATTGATTG-AATTATAT-TATTTTATTTTTATTAA-CAAA-ATTAAAATTTTT
1 AATTGATTGAAATTA-ATGTAATTT-TTTTTATTAATCAAATAATAAAATTTTT
*
24219459 AATTTATTGAAATTAATGTAATTTTTTTTATTAATCAAATAATAAAAT
1 AATTGATTGAAATTAATGTAATTTTTTTTATTAATCAAATAATAAAAT
24219507 ATATTAAGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
50 20 0.49
51 14 0.34
52 7 0.17
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (52 bp):
AATTGATTGAAATTAATGTAATTTTTTTTATTAATCAAATAATAAAATTTTT
Found at i:24219907 original size:22 final size:22
Alignment explanation
Indices: 24219880--24220042 Score: 155
Period size: 22 Copynumber: 7.4 Consensus size: 22
24219870 ATAGGACTTT
* *
24219880 ATAATAAATCATTAACAATTTA
1 ATAATAAATCATTGATAATTTA
* *
24219902 ATAATAAATTATTAATAATTTA
1 ATAATAAATCATTGATAATTTA
* *
24219924 ATAATAAATCATTCATAAGTTA
1 ATAATAAATCATTGATAATTTA
* * * *
24219946 GTAATAAATTATTTATAAATTA
1 ATAATAAATCATTGATAATTTA
* ** * *
24219968 TTAATACTTCAATGTTAATTTA
1 ATAATAAATCATTGATAATTTA
*
24219990 ATAGTAAATCATTGATAATTTA
1 ATAATAAATCATTGATAATTTA
* *
24220012 ATAATATATTATTGATAATTTA
1 ATAATAAATCATTGATAATTTA
*
24220034 GTAATAAAT
1 ATAATAAAT
24220043 TACTAATAAA
Statistics
Matches: 113, Mismatches: 28, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 113 1.00
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.43
Consensus pattern (22 bp):
ATAATAAATCATTGATAATTTA
Found at i:24219919 original size:11 final size:11
Alignment explanation
Indices: 24219881--24219973 Score: 87
Period size: 11 Copynumber: 8.5 Consensus size: 11
24219871 TAGGACTTTA
*
24219881 TAATAAATCAT
1 TAATAAATTAT
* * *
24219892 TAACAATTTAA
1 TAATAAATTAT
24219903 TAATAAATTAT
1 TAATAAATTAT
* *
24219914 TAATAATTTAA
1 TAATAAATTAT
*
24219925 TAATAAATCAT
1 TAATAAATTAT
* * *
24219936 TCATAAGTTAG
1 TAATAAATTAT
24219947 TAATAAATTAT
1 TAATAAATTAT
*
24219958 TTATAAATTAT
1 TAATAAATTAT
24219969 TAATA
1 TAATA
24219974 CTTCAATGTT
Statistics
Matches: 61, Mismatches: 21, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
11 61 1.00
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (11 bp):
TAATAAATTAT
Found at i:24219951 original size:44 final size:44
Alignment explanation
Indices: 24219880--24220051 Score: 173
Period size: 44 Copynumber: 3.9 Consensus size: 44
24219870 ATAGGACTTT
* *
24219880 ATAATAAATCATTAACAATTTAATAATAAATTATTAATAATTTA
1 ATAATAAATCATTGATAATTTAATAATAAATTATTAATAATTTA
* * * * *
24219924 ATAATAAATCATTCATAAGTTAGTAATAAATTATTTATAAATTA
1 ATAATAAATCATTGATAATTTAATAATAAATTATTAATAATTTA
* ** * * * * *
24219968 TTAATACTTCAATGTTAATTTAATAGTAAATCATTGATAATTTA
1 ATAATAAATCATTGATAATTTAATAATAAATTATTAATAATTTA
* * * *
24220012 ATAATATATTATTGATAATTTAGTAATAAATTACTAATAA
1 ATAATAAATCATTGATAATTTAATAATAAATTATTAATAA
24220052 AATAGTTTTA
Statistics
Matches: 99, Mismatches: 29, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
44 99 1.00
ACGTcount: A:0.49, C:0.05, G:0.04, T:0.42
Consensus pattern (44 bp):
ATAATAAATCATTGATAATTTAATAATAAATTATTAATAATTTA
Found at i:24220068 original size:88 final size:88
Alignment explanation
Indices: 24219896--24220095 Score: 215
Period size: 88 Copynumber: 2.3 Consensus size: 88
24219886 AATCATTAAC
* * *
24219896 AATTTAATAATAAATTATTAATAATTTAATAATAAATCATTCATAAGTTAGTAATAAATTATTTA
1 AATTTAATAATAAATCATTAATAATTTAATAATAAATCATTCATAAGTTAGTAATAAATTACTAA
* **
24219961 TAAATTATTAATACTTCAATGTT
66 TAAAATATTAATAAATCAATGTT
* * * * * *
24219984 AATTTAATAGTAAATCATTGATAATTTAATAATATATTATTGATAATTTAGTAATAAATTACTAA
1 AATTTAATAATAAATCATTAATAATTTAATAATAAATCATTCATAAGTTAGTAATAAATTACTAA
*
24220049 TAAAATAGTT-TTAAATCAAT-TAT
66 TAAAATA-TTAATAAATCAATGT-T
* * * *
24220072 AACTTAATTATTAATAATTAATAA
1 AATTTAATAATAAATCATTAATAA
24220096 ATTTTTTATA
Statistics
Matches: 91, Mismatches: 19, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
87 1 0.01
88 88 0.97
89 2 0.02
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.43
Consensus pattern (88 bp):
AATTTAATAATAAATCATTAATAATTTAATAATAAATCATTCATAAGTTAGTAATAAATTACTAA
TAAAATATTAATAAATCAATGTT
Found at i:24221404 original size:18 final size:18
Alignment explanation
Indices: 24221381--24221423 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
24221371 GACCATCAGT
*
24221381 TTGATGTTTGTAAATAGA
1 TTGATGATTGTAAATAGA
24221399 TTGATGATTGTAAATAGA
1 TTGATGATTGTAAATAGA
24221417 TTGATGA
1 TTGATGA
24221424 ATAGATAGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (18 bp):
TTGATGATTGTAAATAGA
Found at i:24225299 original size:19 final size:18
Alignment explanation
Indices: 24225277--24225312 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
24225267 ATTTGATGTG
24225277 AAATATTATTATATTAATA
1 AAATATTATTAT-TTAATA
*
24225296 AAATATTTTTATTTAAT
1 AAATATTATTATTTAAT
24225313 TTTAGTTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
AAATATTATTATTTAATA
Found at i:24225422 original size:22 final size:22
Alignment explanation
Indices: 24225392--24225452 Score: 56
Period size: 22 Copynumber: 2.8 Consensus size: 22
24225382 TTCAAAAATA
*
24225392 AATAGTATTATAATATTATTTT
1 AATAATATTATAATATTATTTT
24225414 AATAATATTA-AATAATATATTTT
1 AATAATATTATAAT-AT-TATTTT
* *
24225437 TA-AATAAT-TAATATTA
1 AATAATATTATAATATTA
24225453 AAAAATATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
20 2 0.06
21 5 0.15
22 19 0.58
23 7 0.21
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (22 bp):
AATAATATTATAATATTATTTT
Found at i:24225441 original size:15 final size:15
Alignment explanation
Indices: 24225419--24225462 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
24225409 ATTTTAATAA
24225419 TATTAAATAATATAT
1 TATTAAATAATATAT
* *
24225434 TTTTAAATAAT-TAA
1 TATTAAATAATATAT
*
24225448 TATTAAAAAATATAT
1 TATTAAATAATATAT
24225463 AAATATTATT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATTAAATAATATAT
Found at i:24225634 original size:18 final size:18
Alignment explanation
Indices: 24225601--24225661 Score: 65
Period size: 18 Copynumber: 3.4 Consensus size: 18
24225591 TTTGTTGTGA
24225601 TTTAATAATAAAAACT-T
1 TTTAATAATAAAAACTAT
24225618 TTTATATAA-AAATAACTAT
1 TTTA-ATAATAAA-AACTAT
*
24225637 TTTAATAATATAAA-TATT
1 TTTAATAATAAAAACTA-T
24225655 TTTAATA
1 TTTAATA
24225662 TTTTAATAAC
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
17 9 0.24
18 22 0.58
19 7 0.18
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (18 bp):
TTTAATAATAAAAACTAT
Found at i:24225651 original size:21 final size:19
Alignment explanation
Indices: 24225603--24225652 Score: 50
Period size: 21 Copynumber: 2.6 Consensus size: 19
24225593 TGTTGTGATT
24225603 TAATAATAAA-AACTTTTTA
1 TAAT-ATAAATAACTTTTTA
*
24225622 T-ATAAAAATAACTATTTTAA
1 TAATATAAATAACT-TTTT-A
24225642 TAATATAAATA
1 TAATATAAATA
24225653 TTTTTAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
17 4 0.16
18 6 0.24
19 5 0.20
20 2 0.08
21 8 0.32
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (19 bp):
TAATATAAATAACTTTTTA
Found at i:24225723 original size:25 final size:26
Alignment explanation
Indices: 24225686--24225738 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 26
24225676 ATTACTATTT
*
24225686 TATTATTATAATATTAATAAAAATAA
1 TATTATTAAAATATTAATAAAAATAA
*
24225712 TATT-TTAAAATATTAATATAAATAA
1 TATTATTAAAATATTAATAAAAATAA
24225737 TA
1 TA
24225739 AATAATTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (26 bp):
TATTATTAAAATATTAATAAAAATAA
Found at i:24227945 original size:27 final size:27
Alignment explanation
Indices: 24227915--24227992 Score: 72
Period size: 27 Copynumber: 2.9 Consensus size: 27
24227905 TTTATTTTAT
24227915 ATTATATTTATATATATTATTAATAAA
1 ATTATATTTATATATATTATTAATAAA
* *
24227942 ATTATTTTTA-ATATCTTAATTTAATAAA
1 ATTATATTTATATATATT-A-TTAATAAA
*
24227970 A--ATATTATAGTATATATAATTAA
1 ATTATATT-TA-TATATATTATTAA
24227993 AATATAATCT
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
26 10 0.24
27 16 0.39
28 10 0.24
29 5 0.12
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (27 bp):
ATTATATTTATATATATTATTAATAAA
Found at i:24227989 original size:28 final size:28
Alignment explanation
Indices: 24227913--24227990 Score: 68
Period size: 28 Copynumber: 2.7 Consensus size: 28
24227903 TATTTATTTT
* *
24227913 ATATTATATTTATATATATTATTAATAAAA
1 ATATTATA-ATATATATAAT-TTAATAAAA
* * *
24227943 TTATTTTTAATATCT-TAATTTAATAAAA
1 ATA-TTATAATATATATAATTTAATAAAA
*
24227971 ATATTATAGTATATATAATT
1 ATATTATAATATATATAATT
24227991 AAAATATAAT
Statistics
Matches: 37, Mismatches: 9, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
27 8 0.22
28 16 0.43
29 3 0.08
30 6 0.16
31 4 0.11
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (28 bp):
ATATTATAATATATATAATTTAATAAAA
Found at i:24228349 original size:9 final size:9
Alignment explanation
Indices: 24228337--24228377 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
24228327 TTTTTCTCTC
24228337 TTTTTTTGT
1 TTTTTTTGT
**
24228346 TTTTCATGT
1 TTTTTTTGT
24228355 TTTTTTTG-
1 TTTTTTTGT
24228363 -TTTTTTGT
1 TTTTTTTGT
24228371 TTTTTTT
1 TTTTTTT
24228378 CATTTATTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
7 7 0.27
9 19 0.73
ACGTcount: A:0.02, C:0.02, G:0.10, T:0.85
Consensus pattern (9 bp):
TTTTTTTGT
Found at i:24228350 original size:18 final size:18
Alignment explanation
Indices: 24228327--24228367 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
24228317 TAGCAAGTAA
24228327 TTTTTC-TCTCTTTTTTTG
1 TTTTTCATCT-TTTTTTTG
*
24228345 TTTTTCATGTTTTTTTTG
1 TTTTTCATCTTTTTTTTG
24228363 TTTTT
1 TTTTT
24228368 TGTTTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 19 0.90
19 2 0.10
ACGTcount: A:0.02, C:0.10, G:0.07, T:0.80
Consensus pattern (18 bp):
TTTTTCATCTTTTTTTTG
Done.