Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25814696
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 122000 characters in sequence are not A, C, G, or T
File 34 of 126
Found at i:7104992 original size:60 final size:60
Alignment explanation
Indices: 7104928--7105043 Score: 214
Period size: 60 Copynumber: 1.9 Consensus size: 60
7104918 GGTTTTAAGG
* *
7104928 TTAGGGTTTAGGTTTAGGGATAGGGTTAGGGTTAAGGTTATGATTTAAGGTTTAGGGTTT
1 TTAGGGTTTAGGTTAAGGGATAAGGTTAGGGTTAAGGTTATGATTTAAGGTTTAGGGTTT
7104988 TTAGGGTTTAGGTTAAGGGATAAGGTTAGGGTTAAGGTTATGATTTAAGGTTTAGG
1 TTAGGGTTTAGGTTAAGGGATAAGGTTAGGGTTAAGGTTATGATTTAAGGTTTAGG
7105044 ATTGGAATTT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
60 54 1.00
ACGTcount: A:0.24, C:0.00, G:0.36, T:0.40
Consensus pattern (60 bp):
TTAGGGTTTAGGTTAAGGGATAAGGTTAGGGTTAAGGTTATGATTTAAGGTTTAGGGTTT
Found at i:7107440 original size:47 final size:46
Alignment explanation
Indices: 7107389--7107613 Score: 168
Period size: 47 Copynumber: 4.8 Consensus size: 46
7107379 CTGTCTACAA
* *
7107389 AAAGGCTCATATGAAATAGACATTTGAGCTTTAAAAAATT-TGTCTAG
1 AAAGGCTCATATGAAATAGACA-TCGAGCTTT-AAAAATTCTATCTAG
* * *
7107436 AAAGGACTCCTATGAAATAGACATCGAGCTTTAAAAATTCTATTTGG
1 AAAGG-CTCATATGAAATAGACATCGAGCTTTAAAAATTCTATCTAG
* * * * * *
7107483 AAATGGCTCATATGAAATGGGCATCGAACTTTAAAAA-TCTTTCCAA
1 AAA-GGCTCATATGAAATAGACATCGAGCTTTAAAAATTCTATCTAG
** * * * **
7107529 AAAGGGCTTTTATGAAGTAGGCATCAAAATTTTAAAAA-TCTATCTAG
1 AAA-GGCTCATATGAAATAGACATC-GAGCTTTAAAAATTCTATCTAG
* * * *
7107576 AAAGGGATCCTATGAAATAGGCATCGAACTTTAAAAAT
1 AAA-GGCTCATATGAAATAGACATCGAGCTTTAAAAAT
7107614 ATATTTGGAA
Statistics
Matches: 143, Mismatches: 30, Indels: 10
0.78 0.16 0.05
Matches are distributed among these distances:
46 41 0.29
47 84 0.59
48 18 0.13
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.29
Consensus pattern (46 bp):
AAAGGCTCATATGAAATAGACATCGAGCTTTAAAAATTCTATCTAG
Found at i:7107635 original size:93 final size:94
Alignment explanation
Indices: 7107538--7107721 Score: 253
Period size: 93 Copynumber: 2.0 Consensus size: 94
7107528 AAAAGGGCTT
* * * *
7107538 TTATGAAGTAGGCATCAAAATTTTAAAAATCTATCTAGAAAGGGATCCTATGAAATAGGCATCGA
1 TTATGAAGTAGGAATCAAAATTTAAAAAATCTATCTAGAAAAGGATCCTATGAAATAGGCATCAA
7107603 ACTTTAAAAA-TATATTTGGAAATGACCC
66 ACTTTAAAAACTATATTTGGAAATGACCC
* * * * * *
7107631 TTATGAAGTAGGAATCAAACTTTAAAAAATCTATTTGGAAAAGGTTCTTATGAAATAGGCATTAA
1 TTATGAAGTAGGAATCAAAATTTAAAAAATCTATCTAGAAAAGGATCCTATGAAATAGGCATCAA
* *
7107696 ACTTTAAAAACTCTGTTTGGAAATGA
66 ACTTTAAAAACTATATTTGGAAATGA
7107722 TGATTTGTCT
Statistics
Matches: 78, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
93 65 0.83
94 13 0.17
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.31
Consensus pattern (94 bp):
TTATGAAGTAGGAATCAAAATTTAAAAAATCTATCTAGAAAAGGATCCTATGAAATAGGCATCAA
ACTTTAAAAACTATATTTGGAAATGACCC
Found at i:7107681 original size:47 final size:47
Alignment explanation
Indices: 7107436--7107718 Score: 239
Period size: 47 Copynumber: 6.0 Consensus size: 47
7107426 ATTTGTCTAG
* * * * *
7107436 AAAGGACTCCTATGAAATAGACATCGAGCTTTAAAAATTCTATTTGGA
1 AAAGG-CTCTTATGAAATAGGCATCAAACTTTAAAAAATCTATTTGGA
* * * * ***
7107484 AATGGCTCATATGAAATGGGCATCGAACTTT-AAAAATCT-TTCCAA
1 AAAGGCTCTTATGAAATAGGCATCAAACTTTAAAAAATCTATTTGGA
* * * * * *
7107529 AAAGGGCTTTTATGAAGTAGGCATCAAAATTTTAAAAATCTATCTAGA
1 AAA-GGCTCTTATGAAATAGGCATCAAACTTTAAAAAATCTATTTGGA
* * * * *
7107577 AAGGGATCCTATGAAATAGGCATCGAACTTT-AAAAATATATTTGGA
1 AAAGGCTCTTATGAAATAGGCATCAAACTTTAAAAAATCTATTTGGA
* * * * *
7107623 AATGACCCTTATGAAGTAGGAATCAAACTTTAAAAAATCTATTTGGA
1 AAAGGCTCTTATGAAATAGGCATCAAACTTTAAAAAATCTATTTGGA
* * * *
7107670 AAAGGTTCTTATGAAATAGGCATTAAACTTTAAAAACTCTGTTTGGA
1 AAAGGCTCTTATGAAATAGGCATCAAACTTTAAAAAATCTATTTGGA
7107717 AA
1 AA
7107719 TGATGATTTG
Statistics
Matches: 183, Mismatches: 48, Indels: 9
0.76 0.20 0.04
Matches are distributed among these distances:
45 5 0.03
46 64 0.35
47 106 0.58
48 8 0.04
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.30
Consensus pattern (47 bp):
AAAGGCTCTTATGAAATAGGCATCAAACTTTAAAAAATCTATTTGGA
Found at i:7107682 original size:140 final size:139
Alignment explanation
Indices: 7107417--7107705 Score: 334
Period size: 140 Copynumber: 2.1 Consensus size: 139
7107407 GACATTTGAG
* * * *
7107417 CTTTAAAAAATTTGTCTAGAAAGGACTCCTATGAAATAGACATCGAGCTTTAAAAATTCTATTTG
1 CTTT-AAAAATCTATCTAGAAAGGACTCCTATGAAATAGACATCGAACTTTAAAAATTATATTTG
* * * * * *
7107482 GAAATGGCTCATATGAAATGGGCATCGAACTTTAAAAATCTTTCCAAAAAGGGCTTTTATGAAGT
65 GAAATGACCCATATGAAATAGGAATCAAACTTTAAAAATCTTTCCAAAAAGGGCTTTTATGAAAT
7107547 AGGCATCAAAA
130 AGGCAT-AAAA
* *
7107558 TTTTAAAAATCTATCTAGAAAGGGA-TCCTATGAAATAGGCATCGAACTTTAAAAA-TATATTTG
1 CTTTAAAAATCTATCTAGAAA-GGACTCCTATGAAATAGACATCGAACTTTAAAAATTATATTTG
* * ***
7107621 GAAATGACCCTTATGAAGTAGGAATCAAACTTTAAAAAATCTATTTGGAAAA-GG-TTCTTATGA
65 GAAATGACCCATATGAAATAGGAATCAAACTTT-AAAAATCT-TTCCAAAAAGGGCTT-TTATGA
*
7107684 AATAGGCATTAAA
127 AATAGGCATAAAA
7107697 CTTTAAAAA
1 CTTTAAAAA
7107706 CTCTGTTTGG
Statistics
Matches: 125, Mismatches: 19, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
139 46 0.37
140 67 0.54
141 12 0.10
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.30
Consensus pattern (139 bp):
CTTTAAAAATCTATCTAGAAAGGACTCCTATGAAATAGACATCGAACTTTAAAAATTATATTTGG
AAATGACCCATATGAAATAGGAATCAAACTTTAAAAATCTTTCCAAAAAGGGCTTTTATGAAATA
GGCATAAAA
Found at i:7113531 original size:17 final size:17
Alignment explanation
Indices: 7113490--7113549 Score: 72
Period size: 16 Copynumber: 3.6 Consensus size: 17
7113480 ATAATGGGTG
7113490 AAAGAATAAAAGAGAGAA
1 AAAGAA-AAAAGAGAGAA
7113508 AAA-AAAAAAGAGAGAA
1 AAAGAAAAAAGAGAGAA
7113524 AAAGAAAAATA-AGA-AA
1 AAAGAAAAA-AGAGAGAA
*
7113540 AAATAAAAAA
1 AAAGAAAAAA
7113550 AATGAAAGAA
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
15 1 0.03
16 24 0.62
17 10 0.26
18 4 0.10
ACGTcount: A:0.80, C:0.00, G:0.15, T:0.05
Consensus pattern (17 bp):
AAAGAAAAAAGAGAGAA
Found at i:7114372 original size:63 final size:62
Alignment explanation
Indices: 7114292--7114574 Score: 262
Period size: 63 Copynumber: 4.4 Consensus size: 62
7114282 TCAGTGGGTG
* *
7114292 AAATTTGTTCTGAAATGGTTAGTGCTGAGAAACCTATGAGTGATGACCAAGTGATGGAAGATA
1 AAATTT-TTCTGAAATGGTTAGTGCTGAGAAACCTATGAGTGGTGACCAAGTGATAGAAGATA
* * * * *
7114355 AAACTTTTTCTGAAATGGTTAGTACTGAGAAACCTTTAAGCGGTGACCAAGTGATAGAGGATA
1 AAA-TTTTTCTGAAATGGTTAGTGCTGAGAAACCTATGAGTGGTGACCAAGTGATAGAAGATA
* *** * * *
7114418 AAATTTGTTCTAAAATGGTTAGTGCTGAGAAACCTATGA-TCGGTGACCAAACAATGGAGGACA
1 AAATTT-TTCTGAAATGGTTAGTGCTGAGAAACCTATGAGT-GGTGACCAAGTGATAGAAGATA
* * *
7114481 AAATTCATTCTAAAATGAAATGGCTAGTGCTGAGAAGCCTATGAGTGGTGACCAAGTGATAGAAG
1 AAATT--TT-T---CTGAAATGGTTAGTGCTGAGAAACCTATGAGTGGTGACCAAGTGATAGAAG
*
7114546 ACA
60 ATA
* * * *
7114549 GAATTCATTCTGATATGGCTAGTGCT
1 AAATT-TTTCTGAAATGGTTAGTGCT
7114575 AAAAAGCTCA
Statistics
Matches: 179, Mismatches: 31, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
62 3 0.02
63 120 0.67
64 4 0.02
65 2 0.01
66 1 0.01
67 1 0.01
68 47 0.26
69 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.28
Consensus pattern (62 bp):
AAATTTTTCTGAAATGGTTAGTGCTGAGAAACCTATGAGTGGTGACCAAGTGATAGAAGATA
Found at i:7115265 original size:21 final size:20
Alignment explanation
Indices: 7115233--7115272 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
7115223 AAATTTATTA
* *
7115233 AATGTGAACCTTTGAACTTG
1 AATGAGAACCTTTAAACTTG
7115253 AATGAGAAGCCTTTAAACTT
1 AATGAGAA-CCTTTAAACTT
7115273 TTGGATGTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (20 bp):
AATGAGAACCTTTAAACTTG
Found at i:7115685 original size:41 final size:41
Alignment explanation
Indices: 7115640--7115755 Score: 133
Period size: 41 Copynumber: 2.8 Consensus size: 41
7115630 GTGCCTCTGC
* ***
7115640 TTAGATGAGCATTTTATTTTTTTGAGTCATTAAGCCTTTAT
1 TTAGAAGAGCATTTTATTTTTCAAAGTCATTAAGCCTTTAT
* * ** *
7115681 TTAGAGGAGCCTTTTATTTTTCAAAGTTGTTGAGCCTTTAT
1 TTAGAAGAGCATTTTATTTTTCAAAGTCATTAAGCCTTTAT
* *
7115722 TTAAAAGAGCATTTTATTTTTCAAAGTCGTTAAG
1 TTAGAAGAGCATTTTATTTTTCAAAGTCATTAAG
7115756 TTTGGCTTAA
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 62 1.00
ACGTcount: A:0.27, C:0.10, G:0.16, T:0.47
Consensus pattern (41 bp):
TTAGAAGAGCATTTTATTTTTCAAAGTCATTAAGCCTTTAT
Found at i:7115842 original size:16 final size:17
Alignment explanation
Indices: 7115810--7115850 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
7115800 TGATTTTTTT
*
7115810 TTAAAAAATAAATAAAA
1 TTAAAAAATAAAGAAAA
7115827 TTAAAAAA-AAAGAAAA
1 TTAAAAAATAAAGAAAA
*
7115843 ATAAAAAA
1 TTAAAAAA
7115851 GGGTGAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 14 0.64
17 8 0.36
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.17
Consensus pattern (17 bp):
TTAAAAAATAAAGAAAA
Found at i:7117039 original size:14 final size:14
Alignment explanation
Indices: 7117020--7117046 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7117010 AATTTGAAAA
7117020 AAAAATAAATAAAT
1 AAAAATAAATAAAT
7117034 AAAAATAAATAAA
1 AAAAATAAATAAA
7117047 ATATTTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (14 bp):
AAAAATAAATAAAT
Found at i:7117462 original size:13 final size:14
Alignment explanation
Indices: 7117436--7117465 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
7117426 TAAAAACAAA
7117436 AATAAATAAAAAAG
1 AATAAATAAAAAAG
7117450 AATAAAT-AAAAAG
1 AATAAATAAAAAAG
7117463 AAT
1 AAT
7117466 TTTTAAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.17
Consensus pattern (14 bp):
AATAAATAAAAAAG
Found at i:7117527 original size:53 final size:52
Alignment explanation
Indices: 7117464--7117646 Score: 195
Period size: 53 Copynumber: 3.4 Consensus size: 52
7117454 AATAAAAAGA
* * *
7117464 ATTTTTAAATTGGCCCAAATGGTGGAAAATTTAGAAATTTCGAAAAAGAAAAT
1 ATTTCTAAATTGACCCAAATGGTGAAAAATTTAGAAATTTC-AAAAAGAAAAT
* * * *
7117517 ATTTTTAAATTGACCCAAATGGTGAAAAATTTAGAAATCCTATAAATAAATAAAAGGA
1 ATTTCTAAATTGACCCAAATGGTGAAAAATTTAGAAAT--T-TCAA-AAAGAAAA--T
* * *
7117575 ATTCCTAAATAGACCCAAATGGTGAAAAATTTAGATATTTCAAAAAGAAAAT
1 ATTTCTAAATTGACCCAAATGGTGAAAAATTTAGAAATTTCAAAAAGAAAAT
* *
7117627 ATTTCTAATTTGGCCCAAAT
1 ATTTCTAAATTGACCCAAAT
7117647 TGTGGAATAA
Statistics
Matches: 108, Mismatches: 16, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
52 16 0.15
53 36 0.33
54 7 0.06
55 6 0.06
56 9 0.08
58 34 0.31
ACGTcount: A:0.46, C:0.10, G:0.13, T:0.30
Consensus pattern (52 bp):
ATTTCTAAATTGACCCAAATGGTGAAAAATTTAGAAATTTCAAAAAGAAAAT
Found at i:7118669 original size:14 final size:15
Alignment explanation
Indices: 7118652--7118681 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7118642 ATATGAATAT
7118652 ACAAA-TAATTCTAA
1 ACAAATTAATTCTAA
7118666 ACAAATTAATTCTAA
1 ACAAATTAATTCTAA
7118681 A
1 A
7118682 TTTTGTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (15 bp):
ACAAATTAATTCTAA
Found at i:7122366 original size:28 final size:26
Alignment explanation
Indices: 7122313--7122370 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 26
7122303 TTACATTAAT
7122313 TATAATTAATATATTTTTAATGAAAAA
1 TATAATTAATATATTTTTAA-GAAAAA
7122340 TATATATTAATATATATTTATAA-AAAAA
1 TATA-ATTAATATAT-TTT-TAAGAAAAA
7122368 TAT
1 TAT
7122371 TACCTAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
27 4 0.14
28 18 0.64
29 3 0.11
30 3 0.11
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (26 bp):
TATAATTAATATATTTTTAAGAAAAA
Found at i:7125734 original size:16 final size:16
Alignment explanation
Indices: 7125715--7125750 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7125705 AAAAAATATC
*
7125715 ATAATAAATGATGCAA
1 ATAATAAATCATGCAA
*
7125731 ATAATAAGTCATGCAA
1 ATAATAAATCATGCAA
7125747 ATAA
1 ATAA
7125751 ATTAATAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.56, C:0.08, G:0.11, T:0.25
Consensus pattern (16 bp):
ATAATAAATCATGCAA
Found at i:7125756 original size:21 final size:21
Alignment explanation
Indices: 7125728--7125776 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
7125718 ATAAATGATG
*
7125728 CAAA-TAATAAGTCATGCAAA
1 CAAATTAATAAATCATGCAAA
* *
7125748 TAAATTAATAAATCATGCAAG
1 CAAATTAATAAATCATGCAAA
7125769 CAAATTAA
1 CAAATTAA
7125777 ATTCATGCAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 3 0.12
21 21 0.88
ACGTcount: A:0.55, C:0.12, G:0.08, T:0.24
Consensus pattern (21 bp):
CAAATTAATAAATCATGCAAA
Found at i:7125843 original size:25 final size:25
Alignment explanation
Indices: 7125815--7125873 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
7125805 TATAATTATT
7125815 CATGC-AA-AAAATATAATAATAAAAG
1 CATGCAAATAAAATATAAT-A-AAAAG
* *
7125840 CATGCAAATAAAATATTATAAAAAT
1 CATGCAAATAAAATATAATAAAAAG
7125865 CATGCAAAT
1 CATGCAAAT
7125874 TTATGCAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 18 0.60
26 3 0.10
27 9 0.30
ACGTcount: A:0.59, C:0.10, G:0.07, T:0.24
Consensus pattern (25 bp):
CATGCAAATAAAATATAATAAAAAG
Found at i:7125935 original size:14 final size:13
Alignment explanation
Indices: 7125918--7125960 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 13
7125908 AAAAATATAA
7125918 AAATAAAAGCATGC
1 AAATAAAA-CATGC
7125932 AAATAAAATCAT--
1 AAATAAAA-CATGC
7125944 AAATAAAACATGC
1 AAATAAAACATGC
7125957 AAAT
1 AAAT
7125961 TATAGATGTC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
11 3 0.12
12 8 0.31
13 4 0.15
14 11 0.42
ACGTcount: A:0.63, C:0.12, G:0.07, T:0.19
Consensus pattern (13 bp):
AAATAAAACATGC
Found at i:7127018 original size:13 final size:12
Alignment explanation
Indices: 7126963--7127021 Score: 66
Period size: 12 Copynumber: 4.8 Consensus size: 12
7126953 ACCAAAATCA
7126963 AAAAATAAAATT
1 AAAAATAAAATT
**
7126975 AAAAAATAAAGCT
1 -AAAAATAAAATT
*
7126988 AAAACTAAAATT
1 AAAAATAAAATT
7127000 -AAAATAGAAATT
1 AAAAATA-AAATT
7127012 AAAAATAAAA
1 AAAAATAAAA
7127022 AGAAGAAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
11 5 0.13
12 17 0.45
13 16 0.42
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.20
Consensus pattern (12 bp):
AAAAATAAAATT
Found at i:7127943 original size:21 final size:20
Alignment explanation
Indices: 7127918--7127971 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
7127908 AAAAATCTTT
7127918 AAAAAATTTAAATTATTTTT-
1 AAAAAATTTAAA-TATTTTTA
**
7127938 TTAAAATTTGAAATATTTTTA
1 AAAAAATTT-AAATATTTTTA
7127959 AAAAAATTATAAA
1 AAAAAATT-TAAA
7127972 AAATTATGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
20 14 0.52
21 12 0.44
22 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
AAAAAATTTAAATATTTTTA
Found at i:7127963 original size:20 final size:20
Alignment explanation
Indices: 7127915--7127963 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
7127905 TAAAAAAATC
7127915 TTTAAAAAATTTAAATTATT
1 TTTAAAAAATTTAAATTATT
**
7127935 TTTTTAAAATTTGAAA-TATT
1 TTTAAAAAATTT-AAATTATT
7127955 TTTAAAAAA
1 TTTAAAAAA
7127964 ATTATAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 21 0.88
21 3 0.12
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (20 bp):
TTTAAAAAATTTAAATTATT
Found at i:7128264 original size:20 final size:20
Alignment explanation
Indices: 7128241--7128306 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
7128231 AATTTTAATT
*
7128241 TTTTTTATATATTTTTAAAA
1 TTTTTTATAAATTTTTAAAA
* * * *
7128261 TTTTTCAAAAATTTTTGAAG
1 TTTTTTATAAATTTTTAAAA
*
7128281 TTTTTTATGAAATTTTTAATA
1 TTTTTTAT-AAATTTTTAAAA
7128302 TTTTT
1 TTTTT
7128307 ATTTTTCAAA
Statistics
Matches: 35, Mismatches: 10, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
20 21 0.60
21 14 0.40
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.62
Consensus pattern (20 bp):
TTTTTTATAAATTTTTAAAA
Found at i:7128470 original size:36 final size:36
Alignment explanation
Indices: 7128391--7128472 Score: 89
Period size: 36 Copynumber: 2.3 Consensus size: 36
7128381 AATTTTTAGA
* * *
7128391 ATTTTA-TTTTTAACTTTCAGATTTTTTCAAAACTT
1 ATTTTATTTTTTAAATTTCAAATATTTTCAAAACTT
*
7128426 -TTTATATTTTTTAAATTTTAAATATTTTCAAAA-TAT
1 ATTT-TATTTTTTAAATTTCAAATATTTTCAAAACT-T
7128462 ATTTTATTTTT
1 ATTTTATTTTT
7128473 AGTTTTTTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
34 3 0.08
35 3 0.08
36 30 0.77
37 3 0.08
ACGTcount: A:0.32, C:0.06, G:0.01, T:0.61
Consensus pattern (36 bp):
ATTTTATTTTTTAAATTTCAAATATTTTCAAAACTT
Found at i:7128512 original size:17 final size:17
Alignment explanation
Indices: 7128487--7128529 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
7128477 TTTTAATTTT
7128487 TTTAA-TTTTAAGAAAA
1 TTTAATTTTTAAGAAAA
* **
7128503 TTTAGTTTTTATTAAAA
1 TTTAATTTTTAAGAAAA
7128520 TTTAATTTTT
1 TTTAATTTTT
7128530 TAATATTTTC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (17 bp):
TTTAATTTTTAAGAAAA
Found at i:7128607 original size:25 final size:24
Alignment explanation
Indices: 7128534--7128614 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 24
7128524 ATTTTTTAAT
*
7128534 ATTTTCTTAAATATTTTAGATTTTTA
1 ATTTT-TTAAATATTTT-CATTTTTA
* *
7128560 A-TTTGTAAA-ATTATCATAATTTTA
1 ATTTTTTAAATATTTTCAT--TTTTA
*
7128584 ATTTTTTAAAATATTTTCATTTTTT
1 ATTTTTT-AAATATTTTCATTTTTA
7128609 ATTTTT
1 ATTTTT
7128615 ATAATTTTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
22 2 0.05
23 4 0.09
24 10 0.23
25 17 0.39
26 4 0.09
27 7 0.16
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (24 bp):
ATTTTTTAAATATTTTCATTTTTA
Found at i:7128625 original size:10 final size:10
Alignment explanation
Indices: 7128610--7128735 Score: 92
Period size: 10 Copynumber: 12.4 Consensus size: 10
7128600 TCATTTTTTA
*
7128610 TTTTTATAAT
1 TTTTTAGAAT
*
7128620 TTTTTAAAAT
1 TTTTTAGAAT
* *
7128630 TGTTTACAAT
1 TTTTTAGAAT
*
7128640 TTTATAGAATT
1 TTTTTAGAA-T
*
7128651 TTTTTAGAAC
1 TTTTTAGAAT
* * *
7128661 TTTTCAAAAA
1 TTTTTAGAAT
* *
7128671 ATTTTACAATT
1 TTTTTAGAA-T
7128682 TTTTTAGAAT
1 TTTTTAGAAT
*
7128692 TGTTTT-TAAT
1 T-TTTTAGAAT
*
7128702 TTTTTAGATT
1 TTTTTAGAAT
*
7128712 TTTTTAAAAT
1 TTTTTAGAAT
7128722 TTTTTAGAAT
1 TTTTTAGAAT
7128732 TTTT
1 TTTT
7128736 AAATAATTTT
Statistics
Matches: 89, Mismatches: 23, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
9 4 0.04
10 65 0.73
11 20 0.22
ACGTcount: A:0.32, C:0.03, G:0.06, T:0.60
Consensus pattern (10 bp):
TTTTTAGAAT
Found at i:7128640 original size:20 final size:19
Alignment explanation
Indices: 7128583--7128736 Score: 75
Period size: 20 Copynumber: 7.9 Consensus size: 19
7128573 TCATAATTTT
7128583 AATTTTTTAAAATATTTT-C
1 AATTTTTTAAAAT-TTTTAC
*
7128602 -ATTTTTT---ATTTTTAT
1 AATTTTTTAAAATTTTTAC
7128617 AATTTTTTAAAATTGTTTAC
1 AATTTTTTAAAATT-TTTAC
* * *
7128637 AATTTTATAGAATTTTTTTAG
1 AATTTTTTA-AA-ATTTTTAC
** *
7128658 AACTTTTCAAAAAATTTTAC
1 AA-TTTTTTAAAATTTTTAC
* **
7128678 AATTTTTTTAGAATTGTTTTT
1 AA-TTTTTTAAAATT-TTTAC
** *
7128699 AATTTTTTAGATTTTTTTAA
1 AATTTTTTA-AAATTTTTAC
*
7128719 AATTTTTTAGAATTTTTA
1 AATTTTTTAAAATTTTTA
7128737 AATAATTTTA
Statistics
Matches: 99, Mismatches: 25, Indels: 22
0.68 0.17 0.15
Matches are distributed among these distances:
14 4 0.04
15 2 0.02
16 7 0.07
18 7 0.07
19 9 0.09
20 46 0.46
21 17 0.17
22 7 0.07
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.60
Consensus pattern (19 bp):
AATTTTTTAAAATTTTTAC
Found at i:7128745 original size:20 final size:19
Alignment explanation
Indices: 7128682--7128756 Score: 60
Period size: 20 Copynumber: 3.7 Consensus size: 19
7128672 TTTTACAATT
** *
7128682 TTTTTAGAATTGTTTTTAAT
1 TTTTTAGAATT-TTTAAAAA
* *
7128702 TTTTTAGATTTTTTTAAAAT
1 TTTTTAGA-ATTTTTAAAAA
7128722 TTTTTAGAATTTTTAAATAA
1 TTTTTAGAATTTTTAAA-AA
*
7128742 TTTTAAGAAATTTTT
1 TTTTTAG-AATTTTT
7128757 TTACTTTCTA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
19 8 0.17
20 29 0.63
21 9 0.20
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61
Consensus pattern (19 bp):
TTTTTAGAATTTTTAAAAA
Found at i:7128753 original size:21 final size:19
Alignment explanation
Indices: 7128712--7128756 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
7128702 TTTTTAGATT
* *
7128712 TTTTTAAAATTTTTTAGAA
1 TTTTTAAAAATTTTAAGAA
7128731 TTTTTAAATAATTTTAAGAAA
1 TTTTTAAA-AATTTTAAG-AA
7128752 TTTTT
1 TTTTT
7128757 TTACTTTCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 8 0.36
20 7 0.32
21 7 0.32
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (19 bp):
TTTTTAAAAATTTTAAGAA
Found at i:7128862 original size:18 final size:19
Alignment explanation
Indices: 7128829--7128864 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
7128819 TTGATTAAAT
*
7128829 TTTTATATATATATTTATA
1 TTTTATATAGATATTTATA
7128848 TTTTAT-TAGATATTTAT
1 TTTTATATAGATATTTAT
7128865 GTCACATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (19 bp):
TTTTATATAGATATTTATA
Found at i:7131821 original size:3 final size:3
Alignment explanation
Indices: 7131813--7131852 Score: 55
Period size: 3 Copynumber: 13.3 Consensus size: 3
7131803 TCTTTTTTAC
*
7131813 TTA TTA TTA TTA TTA TTA TTA TTA TT- TTG TTAA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA T
7131853 CATGTGTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
2 2 0.06
3 30 0.88
4 2 0.06
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7133396 original size:12 final size:12
Alignment explanation
Indices: 7133379--7133418 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
7133369 AGGCATAGTG
*
7133379 TTATTGTTGTTA
1 TTATTGTTATTA
7133391 TTATTGTTATTA
1 TTATTGTTATTA
* *
7133403 TTACTGTTTTTA
1 TTATTGTTATTA
7133415 TTAT
1 TTAT
7133419 ACATGCACCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.20, C:0.03, G:0.10, T:0.68
Consensus pattern (12 bp):
TTATTGTTATTA
Found at i:7139061 original size:6 final size:6
Alignment explanation
Indices: 7139050--7139087 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
7139040 GCTGATGCAC
7139050 CCGTCA CCGTCA CCGTCA CCGTCA CCGTCA CCGTCA CC
1 CCGTCA CCGTCA CCGTCA CCGTCA CCGTCA CCGTCA CC
7139088 ATCAACCTCG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.16, C:0.53, G:0.16, T:0.16
Consensus pattern (6 bp):
CCGTCA
Found at i:7139940 original size:17 final size:18
Alignment explanation
Indices: 7139915--7139949 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
7139905 AAAGTTAACG
*
7139915 TATTTTATTTTTA-AAAA
1 TATTATATTTTTATAAAA
7139932 TATTATATTTTTATAAAA
1 TATTATATTTTTATAAAA
7139950 AAACCTTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TATTATATTTTTATAAAA
Found at i:7142491 original size:31 final size:32
Alignment explanation
Indices: 7142453--7142527 Score: 107
Period size: 32 Copynumber: 2.4 Consensus size: 32
7142443 GAAAAATGAA
*
7142453 ATCAAATGAAATCCAA-GTGCATTAATATTAT
1 ATCAAATGAAATCAAACGTGCATTAATATTAT
* * *
7142484 ATCAAATGAAATCAAACGTGTATTAGTATTTT
1 ATCAAATGAAATCAAACGTGCATTAATATTAT
7142516 ATCAAATGAAAT
1 ATCAAATGAAAT
7142528 TAAATGAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
31 15 0.38
32 24 0.62
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.33
Consensus pattern (32 bp):
ATCAAATGAAATCAAACGTGCATTAATATTAT
Found at i:7143319 original size:12 final size:12
Alignment explanation
Indices: 7143297--7143326 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
7143287 CTTATATATT
7143297 TACAT-ATGAAA
1 TACATCATGAAA
7143308 TACATCATGAAA
1 TACATCATGAAA
7143320 TACATCA
1 TACATCA
7143327 ATTATTCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.28
12 13 0.72
ACGTcount: A:0.50, C:0.17, G:0.07, T:0.27
Consensus pattern (12 bp):
TACATCATGAAA
Found at i:7144937 original size:17 final size:16
Alignment explanation
Indices: 7144917--7144974 Score: 71
Period size: 17 Copynumber: 3.5 Consensus size: 16
7144907 TGGTAATATA
7144917 ATTATCAAGTGATTTTT
1 ATTATCAAGTGA-TTTT
* *
7144934 ATTATCAATGTAATGTT
1 ATTATCAA-GTGATTTT
*
7144951 ATCATCAAGTGATTTT
1 ATTATCAAGTGATTTT
7144967 ATTATCAA
1 ATTATCAA
7144975 TGTAATGTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
16 13 0.38
17 18 0.53
18 3 0.09
ACGTcount: A:0.34, C:0.09, G:0.10, T:0.47
Consensus pattern (16 bp):
ATTATCAAGTGATTTT
Found at i:7144947 original size:34 final size:33
Alignment explanation
Indices: 7144900--7144980 Score: 110
Period size: 34 Copynumber: 2.4 Consensus size: 33
7144890 TTTTAATAAA
*
7144900 ATTATC-ATGGTAATATAATTATCAAGTGATTTTT
1 ATTATCAAT-GTAATATAATCATCAAGTGA-TTTT
* *
7144934 ATTATCAATGTAATGTTATCATCAAGTGATTTT
1 ATTATCAATGTAATATAATCATCAAGTGATTTT
7144967 ATTATCAATGTAAT
1 ATTATCAATGTAAT
7144981 GTTATCACTC
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
33 18 0.42
34 23 0.53
35 2 0.05
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.46
Consensus pattern (33 bp):
ATTATCAATGTAATATAATCATCAAGTGATTTT
Found at i:7144972 original size:33 final size:34
Alignment explanation
Indices: 7144920--7144987 Score: 129
Period size: 33 Copynumber: 2.0 Consensus size: 34
7144910 TAATATAATT
7144920 ATCAAGTGATTTTTATTATCAATGTAATGTTATC
1 ATCAAGTGATTTTTATTATCAATGTAATGTTATC
7144954 ATCAAGTGA-TTTTATTATCAATGTAATGTTATC
1 ATCAAGTGATTTTTATTATCAATGTAATGTTATC
7144987 A
1 A
7144988 CTCTTAATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 25 0.74
34 9 0.26
ACGTcount: A:0.34, C:0.09, G:0.12, T:0.46
Consensus pattern (34 bp):
ATCAAGTGATTTTTATTATCAATGTAATGTTATC
Found at i:7146645 original size:20 final size:22
Alignment explanation
Indices: 7146622--7146661 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
7146612 TAAAATATAT
7146622 TTAAAAATT-AAAA-AATTTAC
1 TTAAAAATTGAAAATAATTTAC
*
7146642 TTAAAATTTGAAAATAATTT
1 TTAAAAATTGAAAATAATTT
7146662 TAAACAATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 4 0.24
22 5 0.29
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.40
Consensus pattern (22 bp):
TTAAAAATTGAAAATAATTTAC
Found at i:7146747 original size:32 final size:31
Alignment explanation
Indices: 7146683--7146787 Score: 90
Period size: 32 Copynumber: 3.4 Consensus size: 31
7146673 ACTTCAATTT
* * * *
7146683 AAAAATTAAATAAAAATATCTGTATTAGTTTA
1 AAAAATTAGATAAAAATATC-ATATCATTTTA
7146715 AAAAATTAGATAAAAACCTAT-ATATCATTTTA
1 AAAAATTAGATAAAAA--TATCATATCATTTTA
* *
7146747 AAATATTA-AGTAAAAATTTCATATCATTTTA
1 AAAAATTAGA-TAAAAATATCATATCATTTTA
*
7146778 AATAA-TAGAT
1 AAAAATTAGAT
7146788 TTATGAATCT
Statistics
Matches: 60, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
30 5 0.08
31 16 0.27
32 36 0.60
34 3 0.05
ACGTcount: A:0.52, C:0.06, G:0.05, T:0.37
Consensus pattern (31 bp):
AAAAATTAGATAAAAATATCATATCATTTTA
Found at i:7148339 original size:10 final size:10
Alignment explanation
Indices: 7148326--7148368 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
7148316 TTGGATCCAA
7148326 TTATATATTT
1 TTATATATTT
7148336 TTAT-TAATTT
1 TTATAT-ATTT
7148346 TTATATATTT
1 TTATATATTT
7148356 TTA-A-ATTT
1 TTATATATTT
7148364 TTATA
1 TTATA
7148369 AAATAAAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
8 7 0.23
9 3 0.10
10 19 0.63
11 1 0.03
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
TTATATATTT
Found at i:7148362 original size:18 final size:19
Alignment explanation
Indices: 7148326--7148368 Score: 70
Period size: 20 Copynumber: 2.3 Consensus size: 19
7148316 TTGGATCCAA
7148326 TTATATATTTTTATTAATTT
1 TTATATATTTTTA-TAATTT
7148346 TTATATATTTTTA-AATTT
1 TTATATATTTTTATAATTT
7148364 TTATA
1 TTATA
7148369 AAATAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 10 0.43
20 13 0.57
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TTATATATTTTTATAATTT
Found at i:7148418 original size:20 final size:19
Alignment explanation
Indices: 7148395--7148439 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
7148385 TTTATATCTT
*
7148395 AATTTATTTAAATATATAAA
1 AATTTATTAAAATA-ATAAA
*
7148415 AATTATATTAAAATAATACA
1 AATT-TATTAAAATAATAAA
7148435 AATTT
1 AATTT
7148440 TAAAAAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 1 0.05
20 12 0.55
21 9 0.41
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (19 bp):
AATTTATTAAAATAATAAA
Found at i:7148896 original size:14 final size:15
Alignment explanation
Indices: 7148877--7148905 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7148867 AGCATGTTAT
7148877 TTATAATT-ATTGTA
1 TTATAATTAATTGTA
7148891 TTATAATTAATTGTA
1 TTATAATTAATTGTA
7148906 ATTTTAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (15 bp):
TTATAATTAATTGTA
Found at i:7149153 original size:32 final size:29
Alignment explanation
Indices: 7149099--7149163 Score: 76
Period size: 32 Copynumber: 2.1 Consensus size: 29
7149089 TCATTTAAAA
* * *
7149099 TTAAAAAAATCATATTTAATTAAAAGTATAT
1 TTAAAAAAATAAAATTAAATTAAAA--ATAT
7149130 TTAAAATAAATAAAATTAAATTAAAAATAT
1 TTAAAA-AAATAAAATTAAATTAAAAATAT
7149160 TTAA
1 TTAA
7149164 TCATTAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
30 8 0.27
31 6 0.20
32 16 0.53
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (29 bp):
TTAAAAAAATAAAATTAAATTAAAAATAT
Found at i:7152508 original size:18 final size:20
Alignment explanation
Indices: 7152485--7152523 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
7152475 AATATTAAGA
7152485 TTGAAT-CAAAAA-TAATTT
1 TTGAATGCAAAAACTAATTT
*
7152503 TTGAATGTAAAAACTAATTT
1 TTGAATGCAAAAACTAATTT
7152523 T
1 T
7152524 AACAACAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 5 0.28
20 7 0.39
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.41
Consensus pattern (20 bp):
TTGAATGCAAAAACTAATTT
Found at i:7153878 original size:2 final size:2
Alignment explanation
Indices: 7153873--7153901 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7153863 CTGATATTTT
7153873 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7153902 TGGTATGTCG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7157803 original size:18 final size:17
Alignment explanation
Indices: 7157776--7157809 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7157766 ACTTGACCTG
*
7157776 AAATATTATTATATTAAA
1 AAATAATATTAT-TTAAA
7157794 AAATAATATTATTTAA
1 AAATAATATTATTTAA
7157810 TTTAATTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AAATAATATTATTTAAA
Found at i:7158053 original size:25 final size:25
Alignment explanation
Indices: 7158025--7158083 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
7158015 TTAATTTTAA
* *
7158025 ATATTATTA-AACATAAATATTTTTT
1 ATATTATTATAACATAAATA-ATATT
*
7158050 ATATT-TTATATCATAAATAATATT
1 ATATTATTATAACATAAATAATATT
7158074 ATATTATTAT
1 ATATTATTAT
7158084 TTTAAAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 11 0.38
25 18 0.62
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (25 bp):
ATATTATTATAACATAAATAATATT
Found at i:7158080 original size:29 final size:28
Alignment explanation
Indices: 7158040--7158100 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 28
7158030 ATTAAACATA
* **
7158040 AATATTTTTTA-TATTTTATATCATAAAT
1 AATATTTATTATTATTTTA-AAAATAAAT
7158068 AATATTATATTATTATTTTAAAAATAAAT
1 AATATT-TATTATTATTTTAAAAATAAAT
7158097 AATA
1 AATA
7158101 AATATTGAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 6 0.21
29 15 0.54
30 7 0.25
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (28 bp):
AATATTTATTATTATTTTAAAAATAAAT
Found at i:7158278 original size:28 final size:28
Alignment explanation
Indices: 7158220--7158281 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
7158210 TTTAATTTAT
* * *
7158220 AATATATTATTTTTATATTTTATTGACA
1 AATATATTATTGTTATATTTTAATAACA
*
7158248 AATATA-TATTGTTACTATTTTAATAATA
1 AATATATTATTGTTA-TATTTTAATAACA
7158276 AATATA
1 AATATA
7158282 AATAAATAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 7 0.24
28 22 0.76
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (28 bp):
AATATATTATTGTTATATTTTAATAACA
Found at i:7161247 original size:22 final size:24
Alignment explanation
Indices: 7161196--7161241 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
7161186 AAAAAATTAA
*
7161196 AATATTAC-TATTAAAAGTATTTT
1 AATATTTCATATTAAAAGTATTTT
7161219 AATATTTCATATT-AAA-TATTTT
1 AATATTTCATATTAAAAGTATTTT
7161241 A
1 A
7161242 TAATTTACTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 7 0.33
23 10 0.48
24 4 0.19
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.50
Consensus pattern (24 bp):
AATATTTCATATTAAAAGTATTTT
Found at i:7161489 original size:42 final size:44
Alignment explanation
Indices: 7161443--7161529 Score: 126
Period size: 42 Copynumber: 2.0 Consensus size: 44
7161433 TTATATTATA
7161443 TTATTATTTTAATAA-TAA-TT-AATAACATATATAATAATATTT
1 TTATTATTTTAATAATTAAGTTAAATAACATA-ATAATAATATTT
*
7161485 TTATTATTTTAATAATTAATGTTAAATAACATAATAATATTATTT
1 TTATTATTTTAATAATTAA-GTTAAATAACATAATAATAATATTT
7161530 CTTAATATGA
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
42 15 0.38
43 3 0.08
45 13 0.32
46 9 0.22
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (44 bp):
TTATTATTTTAATAATTAAGTTAAATAACATAATAATAATATTT
Found at i:7161528 original size:39 final size:38
Alignment explanation
Indices: 7161440--7161536 Score: 92
Period size: 42 Copynumber: 2.4 Consensus size: 38
7161430 GTATTATATT
*
7161440 ATATTATTATTTTAATAATAATTAATAACATATATAATA
1 ATATTATTATTTTAATAATAATT-ATAACATACATAATA
7161479 ATATTTTTATTATTTTAATAATTAATGT-TAA-ATAACATAATA
1 ATA---TTATTATTTTAATAA-TAAT-TATAACAT-ACATAATA
*
7161521 ATATTATT-TCTTAATA
1 ATATTATTATTTTAATA
7161537 TGAATATTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
38 7 0.14
39 8 0.16
41 2 0.04
42 28 0.56
43 4 0.08
44 1 0.02
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.49
Consensus pattern (38 bp):
ATATTATTATTTTAATAATAATTATAACATACATAATA
Found at i:7162554 original size:15 final size:15
Alignment explanation
Indices: 7162528--7162566 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
7162518 GAGAACCAAG
* *
7162528 ATAAAAAAAAAAATT
1 ATAAAAATAAAAATA
*
7162543 ATTAAAATAAAAATA
1 ATAAAAATAAAAATA
7162558 ATAAAAATA
1 ATAAAAATA
7162567 CACCAATTGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (15 bp):
ATAAAAATAAAAATA
Found at i:7162735 original size:17 final size:17
Alignment explanation
Indices: 7162715--7162753 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
7162705 AAGATCATGG
7162715 TAAAAAATAAAAAATTA
1 TAAAAAATAAAAAATTA
* *
7162732 TAAAAGATTAAAAATTA
1 TAAAAAATAAAAAATTA
7162749 -AAAAA
1 TAAAAA
7162754 TACATTAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (17 bp):
TAAAAAATAAAAAATTA
Found at i:7164275 original size:18 final size:18
Alignment explanation
Indices: 7164252--7164310 Score: 70
Period size: 18 Copynumber: 3.3 Consensus size: 18
7164242 GTATAATTTT
7164252 ATTTTTATTAAATTTATA
1 ATTTTTATTAAATTTATA
7164270 ATTTTTATTAATATTT-TA
1 ATTTTTATTAA-ATTTATA
*
7164288 ATTTATATTATAA-TTAT-
1 ATTTTTATTA-AATTTATA
7164305 ATTTTT
1 ATTTTT
7164311 TTATATCATT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
17 7 0.19
18 24 0.67
19 5 0.14
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
ATTTTTATTAAATTTATA
Found at i:7164295 original size:12 final size:12
Alignment explanation
Indices: 7164262--7164309 Score: 53
Period size: 12 Copynumber: 4.0 Consensus size: 12
7164252 ATTTTTATTA
7164262 AATTTATAATTTT
1 AATTTAT-ATTTT
* *
7164275 TATTAATATTTT
1 AATTTATATTTT
*
7164287 AATTTATATTAT
1 AATTTATATTTT
7164299 AA-TTATATTTT
1 AATTTATATTTT
7164310 TTTATATCAT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
11 8 0.28
12 16 0.55
13 5 0.17
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
AATTTATATTTT
Found at i:7164305 original size:36 final size:36
Alignment explanation
Indices: 7164247--7164325 Score: 94
Period size: 36 Copynumber: 2.2 Consensus size: 36
7164237 ATCAAGTATA
*
7164247 ATTTT-ATTTTTATTAAATTTATAATTTTTATTA-AT-
1 ATTTTAATTTATATTAAATTTAT-ATTTTT-TTATATC
7164282 ATTTTAATTTATATTATAA-TTATATTTTTTTATATC
1 ATTTTAATTTATATTA-AATTTATATTTTTTTATATC
7164318 ATTTTAAT
1 ATTTTAAT
7164326 ATTGTGTTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
34 3 0.08
35 13 0.33
36 21 0.54
37 2 0.05
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (36 bp):
ATTTTAATTTATATTAAATTTATATTTTTTTATATC
Found at i:7164327 original size:21 final size:23
Alignment explanation
Indices: 7164276--7164328 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 23
7164266 TATAATTTTT
*
7164276 ATTAATATTTTAATTTATATTATA
1 ATTAATATTTT-ATTTATATCATA
7164300 ATT-ATATTTT-TTTATATCAT-
1 ATTAATATTTTATTTATATCATA
*
7164320 TTTAATATT
1 ATTAATATT
7164329 GTGTTATCGT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 2 0.08
21 14 0.54
23 7 0.27
24 3 0.12
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (23 bp):
ATTAATATTTTATTTATATCATA
Found at i:7164955 original size:20 final size:20
Alignment explanation
Indices: 7164930--7164970 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
7164920 CTCTTCTGAT
7164930 GCCAAGTTCCAGAATTTTCA
1 GCCAAGTTCCAGAATTTTCA
7164950 GCCAAGTTCCAGAATTTTCA
1 GCCAAGTTCCAGAATTTTCA
7164970 G
1 G
7164971 AACAAAGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (20 bp):
GCCAAGTTCCAGAATTTTCA
Found at i:7176043 original size:12 final size:12
Alignment explanation
Indices: 7176026--7176050 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7176016 TTGTCCACCA
7176026 AAAACAAGAAAC
1 AAAACAAGAAAC
7176038 AAAACAAGAAAC
1 AAAACAAGAAAC
7176050 A
1 A
7176051 CTTCACCTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.16, G:0.08, T:0.00
Consensus pattern (12 bp):
AAAACAAGAAAC
Found at i:7177967 original size:15 final size:15
Alignment explanation
Indices: 7177943--7177981 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
7177933 AAGCCATGAA
7177943 CATACCTTCCAATTC
1 CATACCTTCCAATTC
*
7177958 CATACGTTCCAATTC
1 CATACCTTCCAATTC
7177973 CATACCTTC
1 CATACCTTC
7177982 TCCAAAACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.26, C:0.38, G:0.03, T:0.33
Consensus pattern (15 bp):
CATACCTTCCAATTC
Found at i:7180268 original size:17 final size:17
Alignment explanation
Indices: 7180254--7180286 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
7180244 AATTAAATAA
7180254 TAAA-TATA-TTTAAAT
1 TAAATTATATTTTAAAT
7180269 TAAATTATATTTTAAAT
1 TAAATTATATTTTAAAT
7180286 T
1 T
7180287 TTAAATGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 4 0.25
17 8 0.50
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TAAATTATATTTTAAAT
Found at i:7180530 original size:11 final size:11
Alignment explanation
Indices: 7180494--7180531 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
7180484 AAATTTATTT
7180494 TTGATAATTAA
1 TTGATAATTAA
7180505 TTGA-AATTAA
1 TTGATAATTAA
*
7180515 TTTGATAATTGA
1 -TTGATAATTAA
7180527 TTGAT
1 TTGAT
7180532 TAATCAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
10 6 0.25
11 13 0.54
12 5 0.21
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.47
Consensus pattern (11 bp):
TTGATAATTAA
Found at i:7181339 original size:13 final size:13
Alignment explanation
Indices: 7181321--7181345 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7181311 TACTTTTTGC
7181321 AATCTAAAATATT
1 AATCTAAAATATT
7181334 AATCTAAAATAT
1 AATCTAAAATAT
7181346 AACAAATTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (13 bp):
AATCTAAAATATT
Found at i:7181489 original size:19 final size:20
Alignment explanation
Indices: 7181453--7181501 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
7181443 ATATTAGCAT
**
7181453 TTTTTTTCTCTTTCTTTTT-C
1 TTTTTTT-TCTTAATTTTTCC
7181473 TTTTTTTTCTTAATTTTTCC
1 TTTTTTTTCTTAATTTTTCC
7181493 TTTCTTTTT
1 TTT-TTTTT
7181502 TTTTTTATCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 9 0.36
20 11 0.44
21 5 0.20
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.80
Consensus pattern (20 bp):
TTTTTTTTCTTAATTTTTCC
Found at i:7181505 original size:15 final size:15
Alignment explanation
Indices: 7181452--7181505 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
7181442 TATATTAGCA
7181452 TTTTTTTTCTCTTTCT
1 TTTTTTTTC-CTTTCT
*
7181468 TTTTCTTTT-TTTTCT
1 TTTT-TTTTCCTTTCT
**
7181483 TAATTTTTCCTTTCT
1 TTTTTTTTCCTTTCT
7181498 TTTTTTTT
1 TTTTTTTT
7181506 TTATCTCTCA
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
14 4 0.13
15 18 0.60
16 4 0.13
17 4 0.13
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (15 bp):
TTTTTTTTCCTTTCT
Found at i:7189906 original size:154 final size:154
Alignment explanation
Indices: 7189626--7189938 Score: 581
Period size: 154 Copynumber: 2.0 Consensus size: 154
7189616 AAAGAACTTT
* *
7189626 ATTTTAAGCAAAAATAAAAATGAAAAACAATGAAAAAGCTGAATTAAAGTTAAGCAATGTTCACC
1 ATTTTAAGCAAAAATAAAAATAAAAAACAATGAAAAAGCTAAATTAAAGTTAAGCAATGTTCACC
*
7189691 GAGGGGAGGGATTGCAACCTTGCAAATCTTTTCACCATGTTGAAATTTCTATGGGATCATCAGTC
66 GAGGGGAGGGATTGCAACCTTGCAAATCTTTTCACCATGTTAAAATTTCTATGGGATCATCAGTC
7189756 GGGGTGTGCCCCAACCTCGTGCAA
131 GGGGTGTGCCCCAACCTCGTGCAA
*
7189780 ATTTTAAGCAAAAATAAAAATAAAAAATAATGAAAAAGCTAAATTAAAGTTAAGCAATGTTCACC
1 ATTTTAAGCAAAAATAAAAATAAAAAACAATGAAAAAGCTAAATTAAAGTTAAGCAATGTTCACC
*
7189845 GATGGGAGGGATTGCAACCTTGCAAATCTTTTCACCATGTTAAAATTTCTATGGGATCATCAGTC
66 GAGGGGAGGGATTGCAACCTTGCAAATCTTTTCACCATGTTAAAATTTCTATGGGATCATCAGTC
7189910 GGGGTGTGCCCCAACCTCGTGCAA
131 GGGGTGTGCCCCAACCTCGTGCAA
7189934 ATTTT
1 ATTTT
7189939 TTTAAAATTA
Statistics
Matches: 154, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
154 154 1.00
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (154 bp):
ATTTTAAGCAAAAATAAAAATAAAAAACAATGAAAAAGCTAAATTAAAGTTAAGCAATGTTCACC
GAGGGGAGGGATTGCAACCTTGCAAATCTTTTCACCATGTTAAAATTTCTATGGGATCATCAGTC
GGGGTGTGCCCCAACCTCGTGCAA
Found at i:7193557 original size:22 final size:22
Alignment explanation
Indices: 7193529--7193573 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
7193519 AACATCTAAC
7193529 TTAAATTCGA-TTGAAATATAAA
1 TTAAATTC-ATTTGAAATATAAA
*
7193551 TTAAATTCATTTGATATATAAA
1 TTAAATTCATTTGAAATATAAA
7193573 T
1 T
7193574 ATAATAACTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 1 0.05
22 20 0.95
ACGTcount: A:0.47, C:0.04, G:0.07, T:0.42
Consensus pattern (22 bp):
TTAAATTCATTTGAAATATAAA
Found at i:7194031 original size:119 final size:119
Alignment explanation
Indices: 7193820--7194056 Score: 465
Period size: 119 Copynumber: 2.0 Consensus size: 119
7193810 AATAATAATA
7193820 AAAAAATGAGAGAAAAGGGTTGGACCACTCTTCGGTCTGATCCAGTTTGGAGTTCATTTGTAGGC
1 AAAAAATGAGAGAAAAGGGTTGGACCACTCTTCGGTCTGATCCAGTTTGGAGTTCATTTGTAGGC
7193885 TGGCCCACTTAACTTACTTCTAGAGGAACAAACCCAACTATTTAAAGCCTAAAT
66 TGGCCCACTTAACTTACTTCTAGAGGAACAAACCCAACTATTTAAAGCCTAAAT
7193939 AAAAAATGAGAGAAAAGGGTTGGACCACTCTTCGGTCTGATCCAGTTTGGAGTTCATTTGTAGGC
1 AAAAAATGAGAGAAAAGGGTTGGACCACTCTTCGGTCTGATCCAGTTTGGAGTTCATTTGTAGGC
*
7194004 TGGCCCATTTAACTTACTTCTAGAGGAACAAACCCAACTATTTAAAGCCTAAA
66 TGGCCCACTTAACTTACTTCTAGAGGAACAAACCCAACTATTTAAAGCCTAAA
7194057 GGGAAGTTTG
Statistics
Matches: 117, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
119 117 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (119 bp):
AAAAAATGAGAGAAAAGGGTTGGACCACTCTTCGGTCTGATCCAGTTTGGAGTTCATTTGTAGGC
TGGCCCACTTAACTTACTTCTAGAGGAACAAACCCAACTATTTAAAGCCTAAAT
Found at i:7195547 original size:60 final size:60
Alignment explanation
Indices: 7195445--7195565 Score: 197
Period size: 60 Copynumber: 2.0 Consensus size: 60
7195435 AACTTGAAGT
7195445 TGCATGGGTTGTTGCATGAGTAGTTACATGGCTAATTATATTGTGACTGAGTTGACTCAG
1 TGCATGGGTTGTTGCATGAGTAGTTACATGGCTAATTATATTGTGACTGAGTTGACTCAG
* * ** *
7195505 TGCATGGGTTGTTGCTTGAGTAGTTGCATGGCTCTTTGTATTGTGACTGAGTTGACTCAG
1 TGCATGGGTTGTTGCATGAGTAGTTACATGGCTAATTATATTGTGACTGAGTTGACTCAG
7195565 T
1 T
7195566 TTGCATTTTG
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.19, C:0.12, G:0.30, T:0.39
Consensus pattern (60 bp):
TGCATGGGTTGTTGCATGAGTAGTTACATGGCTAATTATATTGTGACTGAGTTGACTCAG
Found at i:7202964 original size:22 final size:25
Alignment explanation
Indices: 7202919--7202966 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
7202909 TTTTGATCTC
*
7202919 TTTGTTCAGATATATTTTATATTTT
1 TTTGTTCAGATATATATTATATTTT
7202944 TTTGTTCA-ATAT-TATTA-ATTTT
1 TTTGTTCAGATATATATTATATTTT
7202966 T
1 T
7202967 ATAAATAGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 6 0.27
23 4 0.18
24 4 0.18
25 8 0.36
ACGTcount: A:0.25, C:0.04, G:0.06, T:0.65
Consensus pattern (25 bp):
TTTGTTCAGATATATATTATATTTT
Found at i:7205390 original size:206 final size:204
Alignment explanation
Indices: 7205038--7205449 Score: 745
Period size: 206 Copynumber: 2.0 Consensus size: 204
7205028 TACTAGTTGT
*
7205038 ATTGTAGGGGGTTGATAAAAAAGTCTTTGTTGTATTTGGTGAGGTAGATAGACATAAGGAGTTGA
1 ATTGTAGGGGGTTGATAAAAAAGTCTTTGTTGTATTTGGTGAAGTAGATAGACATAAGGAGTTGA
7205103 TAAAAATTCCTAGGATTAGGATTGGTGATGATGGAGGAAATGAAAAAGGCAAAACCTTTTTAGTT
66 TAAAAATTCCTAGGATTAGGATTGGTGATGATGGAGGAAATGAAAAAGGCAAAACCTTTTTAGTT
* *
7205168 TGCTTCTTGTTAATTGTTCTCCATCTTTCCTAATTCTGTAAGGGTTTTTTGCCCTTATCCATGAG
131 TGCTTCTTGTTAATTGTTCTCCATCTTTCCTAATCCTGTAAGGGTTTTTTGCCCTTATCCATAAG
7205233 GTCTGCTGA
196 GTCTGCTGA
*
7205242 ATTGTAGGGGGTTGATAAAAAGGTCTTTGTTGTATTTGGTGAAGTAGATAGACATAAGGAGTATG
1 ATTGTAGGGGGTTGATAAAAAAGTCTTTGTTGTATTTGGTGAAGTAGATAGACATAAGGAGT-TG
7205307 AATAAAAATTCCTAGG-TTAGGAATTGGTGATGATGGAGGAAATGAAAAAGGCAAAACCTTTTTA
65 -ATAAAAATTCCTAGGATTAGG-ATTGGTGATGATGGAGGAAATGAAAAAGGCAAAACCTTTTTA
*
7205371 GTTTGCTTCTTGTTAATTGTTCTCCATCTTTCCTGATCCTGTAAGGGTTTTTTGCCCTTATCCAT
128 GTTTGCTTCTTGTTAATTGTTCTCCATCTTTCCTAATCCTGTAAGGGTTTTTTGCCCTTATCCAT
7205436 AAGGTCTGCTGA
193 AAGGTCTGCTGA
7205448 AT
1 AT
7205450 AAACCAACCA
Statistics
Matches: 200, Mismatches: 5, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
204 60 0.30
205 7 0.04
206 133 0.67
ACGTcount: A:0.28, C:0.11, G:0.24, T:0.36
Consensus pattern (204 bp):
ATTGTAGGGGGTTGATAAAAAAGTCTTTGTTGTATTTGGTGAAGTAGATAGACATAAGGAGTTGA
TAAAAATTCCTAGGATTAGGATTGGTGATGATGGAGGAAATGAAAAAGGCAAAACCTTTTTAGTT
TGCTTCTTGTTAATTGTTCTCCATCTTTCCTAATCCTGTAAGGGTTTTTTGCCCTTATCCATAAG
GTCTGCTGA
Found at i:7208347 original size:79 final size:79
Alignment explanation
Indices: 7208088--7208352 Score: 208
Period size: 79 Copynumber: 3.3 Consensus size: 79
7208078 TTGAAGTCTG
* * * * * * * *
7208088 AAATGAATAACTTAGACTAAGAAGGATTTGACAAAAGTTAAAATCCAAAACAAAAAGACCTAGAC
1 AAATAAATAACTTAGACTAAAAAAGATTTGACAAGAGTCAAAATTCAAAATAAAAAGACCTGGAC
* *
7208153 TGAGCCAAAGCCTGA
66 TGAACCGAAGCCT-A
* * * * * * * *
7208168 AAATAAATAACTTGGATTGAACTGAAGAAGAATCTGGCATAG-GCCAAAATTTGAAAATAGAATG
1 AAATAAATAACTT--A--G-ACTAAAAAAG-ATTTGACA-AGAGTCAAAA-TTCAAAATAAAAAG
* ** * *
7208232 ACCTGGATTGAATTGAAGTCTG
58 ACCTGGACTGAACCGAAGCCTA
* * *
7208254 AAATGAAGAACTTAGACTAAAAAAGATTTAACAAGAGTCAAAATTCAAAATAAAAAGACCTGGAC
1 AAATAAATAACTTAGACTAAAAAAGATTTGACAAGAGTCAAAATTCAAAATAAAAAGACCTGGAC
7208319 TGAACCGAAGCCTA
66 TGAACCGAAGCCTA
7208333 AAATAAATAACTTAGACTAA
1 AAATAAATAACTTAGACTAA
7208353 GTTGAAGAAA
Statistics
Matches: 135, Mismatches: 41, Indels: 19
0.69 0.21 0.10
Matches are distributed among these distances:
79 48 0.36
80 23 0.17
81 8 0.06
82 2 0.01
84 2 0.01
85 6 0.04
86 22 0.16
87 24 0.18
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.21
Consensus pattern (79 bp):
AAATAAATAACTTAGACTAAAAAAGATTTGACAAGAGTCAAAATTCAAAATAAAAAGACCTGGAC
TGAACCGAAGCCTA
Found at i:7208424 original size:165 final size:166
Alignment explanation
Indices: 7208040--7208436 Score: 451
Period size: 165 Copynumber: 2.4 Consensus size: 166
7208030 AATGAGCTGA
* * * * * ***
7208040 CATAGGCCAAAATC-CAAAAGACAATGACTTAGGTTGAATTGAAGTCTGAAATGAATAACTTAGA
1 CATAGGCCAAAATCTGAAAATAAAATGACCTAGATTGAACCAAAGTCTGAAATGAATAACTTAGA
* * * * *
7208104 CTAAGAAGGATTTGACAAAAGTTAAAATCCAAAACAAAAAGACCTAGACTGAGCCAAAGCCTGAA
66 CTAAAAAAGATTTAACAAAAGTCAAAATCCAAAACAAAAAGACCTAGACTGAACCAAAGCCTGAA
* * *
7208169 AATAAATAACTTGGATTGAACTGAAGAAGAATCTGG
131 AATAAATAACTTAGACTGAACTGAAGAAGAATCTAG
* * * *** *
7208205 CATAGGCCAAAATTTGAAAATAGAATGACCTGGATTGAATTGAAGTCTGAAATGAAGAACTTAGA
1 CATAGGCCAAAATCTGAAAATAAAATGACCTAGATTGAACCAAAGTCTGAAATGAATAACTTAGA
* * * * *
7208270 CTAAAAAAGATTTAACAAGAGTCAAAATTCAAAATAAAAAGACCTGGACTGAACCGAAGCCT-AA
66 CTAAAAAAGATTTAACAAAAGTCAAAATCCAAAACAAAAAGACCTAGACTGAACCAAAGCCTGAA
* *
7208334 AATAAATAACTTAGACT-AAGTTGAAGAA-AGATCTAT
131 AATAAATAACTTAGACTGAA-CTGAAGAAGA-ATCTAG
* * *
7208370 CATAGGTCAAAATCTGAAAATAAAATTACCTAGATTGAACCAAAGTTTGAAATGAATAACTTAGA
1 CATAGGCCAAAATCTGAAAATAAAATGACCTAGATTGAACCAAAGTCTGAAATGAATAACTTAGA
7208435 CT
66 CT
7208437 GAATTGAAGA
Statistics
Matches: 196, Mismatches: 33, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
164 3 0.02
165 98 0.50
166 95 0.48
ACGTcount: A:0.47, C:0.14, G:0.17, T:0.22
Consensus pattern (166 bp):
CATAGGCCAAAATCTGAAAATAAAATGACCTAGATTGAACCAAAGTCTGAAATGAATAACTTAGA
CTAAAAAAGATTTAACAAAAGTCAAAATCCAAAACAAAAAGACCTAGACTGAACCAAAGCCTGAA
AATAAATAACTTAGACTGAACTGAAGAAGAATCTAG
Found at i:7208428 original size:86 final size:86
Alignment explanation
Indices: 7208026--7208604 Score: 332
Period size: 86 Copynumber: 7.0 Consensus size: 86
7208016 GGAATGACCC
* * * * * * * ** *
7208026 GAAGAATGAGCTGA-CATAGGCCAAAATC-CAAAAGACAATGACTTAGGTTGAATTGAAGTCTGA
1 GAAGAAAGATCTGATCATAGGTCAAAATCTCAAAATAAAATGACCTAGATTGAACCGAAGTCTAA
7208089 AATGAATAACTTAGACTAA--
66 AATGAATAACTTAGACTAATT
* * * * * * * * * *
7208108 GAAG---GATTTGA-CAAAAGTTAAAATC-CAAAACAAAAAGACCTAGACTGAGCCAAAGCCTGA
1 GAAGAAAGATCTGATCATAGGTCAAAATCTCAAAATAAAATGACCTAGATTGAACCGAAGTCT-A
* * * *
7208168 AAATAAATAACTTGGATTGAACT
65 AAATGAATAACTTAGACT-AATT
* * * * * * ** *
7208191 GAAG-AAGAATCTG-GCATAGGCCAAAATTTGAAAATAGAATGACCTGGATTGAATTGAAGTCTG
1 GAAGAAAG-ATCTGATCATAGGTCAAAATCTCAAAATAAAATGACCTAGATTGAACCGAAGTCTA
*
7208254 AAATGAAGAACTTAGACT-A--
65 AAATGAATAACTTAGACTAATT
* * * * * *
7208273 -AA-AAAGAT-TTAACA-AGAGTCAAAAT-TCAAAATAAAAAGACCTGGACTGAACCGAAGCCTA
1 GAAGAAAGATCTGATCATAG-GTCAAAATCTCAAAATAAAATGACCTAGATTGAACCGAAGTCTA
*
7208333 AAATAAATAACTTAGACTAAGTT
65 AAATGAATAACTTAGACTAA-TT
* * * * *
7208356 GAAGAAAGATCT-ATCATAGGTCAAAATCTGAAAATAAAATTACCTAGATTGAACCAAAGTTTGA
1 GAAGAAAGATCTGATCATAGGTCAAAATCTCAAAATAAAATGACCTAGATTGAACCGAAGTCTAA
7208420 AATGAATAACTTAGACTGAATT
66 AATGAATAACTTAGACT-AATT
* * * *
7208442 GAAGAAAGATCTGGT-ATAGGCCAAAATC-CAAAATCAAAATGACCTAGGTTGAGCCGAAGTCT-
1 GAAGAAAGATCTGATCATAGGTCAAAATCTCAAAAT-AAAATGACCTAGATTGAACCGAAGTCTA
* *
7208504 -AA--AATAACTTGGACTAAGCT
65 AAATGAATAACTTAGACTAA-TT
** * * * * * *
7208524 GAAGAGTGATTTGAT-GTAAGTCAAAATC-CAAAAACAAAATGACCTAGGTTGAACCAAAGTCTA
1 GAAGAAAGATCTGATCATAGGTCAAAATCTC-AAAATAAAATGACCTAGATTGAACCGAAGTCTA
*
7208587 AAATGAATAACTTGGACT
65 AAATGAATAACTTAGACT
7208605 GAGCCACAAT
Statistics
Matches: 380, Mismatches: 87, Indels: 56
0.73 0.17 0.11
Matches are distributed among these distances:
79 83 0.22
80 27 0.07
81 9 0.02
82 64 0.17
83 8 0.02
84 7 0.02
85 23 0.06
86 134 0.35
87 25 0.07
ACGTcount: A:0.46, C:0.14, G:0.18, T:0.22
Consensus pattern (86 bp):
GAAGAAAGATCTGATCATAGGTCAAAATCTCAAAATAAAATGACCTAGATTGAACCGAAGTCTAA
AATGAATAACTTAGACTAATT
Found at i:7209656 original size:65 final size:63
Alignment explanation
Indices: 7209554--7209689 Score: 175
Period size: 65 Copynumber: 2.1 Consensus size: 63
7209544 CAATTTGAGC
* *** * *
7209554 TTTTTTTTTTTTGAACTCTAATTGCCTTTTACGGGTTTTCAATTTGAGC-CATTTTTCTCTTTTT
1 TTTTTTTTTTTTGAACTCAAACCACCCTTTACAGGTTTTCAATTTGAGCTC--TTTTCTCTTTTT
*
7209618 TGTTTTTTTTTTTGAACTCAAACCACCCTTTATAGGTTTTCAATTTGAGCTCTTTTCTCTTTTT
1 T-TTTTTTTTTTTGAACTCAAACCACCCTTTACAGGTTTTCAATTTGAGCTCTTTTCTCTTTTT
7209682 TTTTTTTT
1 TTTTTTTT
7209690 AAGAAAAATA
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
63 7 0.11
64 14 0.22
65 41 0.65
66 1 0.02
ACGTcount: A:0.15, C:0.16, G:0.10, T:0.60
Consensus pattern (63 bp):
TTTTTTTTTTTTGAACTCAAACCACCCTTTACAGGTTTTCAATTTGAGCTCTTTTCTCTTTTT
Found at i:7217028 original size:15 final size:14
Alignment explanation
Indices: 7217004--7217042 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
7216994 TTATTTTGTT
7217004 AAATGTAATGAATGA
1 AAATG-AATGAATGA
*
7217019 GAATGCAATGAATGA
1 AAATG-AATGAATGA
7217034 AAATGAATG
1 AAATGAATG
7217043 CATCGAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 4 0.19
15 17 0.81
ACGTcount: A:0.51, C:0.03, G:0.23, T:0.23
Consensus pattern (14 bp):
AAATGAATGAATGA
Found at i:7220568 original size:58 final size:57
Alignment explanation
Indices: 7220295--7220731 Score: 436
Period size: 59 Copynumber: 7.4 Consensus size: 57
7220285 TCTTAGAGCA
7220295 TTTTGATATTTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTT
1 TTTTGA-ATTTTTATTTT-AAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATA--TTT
* * **
7220356 TTTTGAGAATTTTATTTTCAA-AGAAAATTGATACTTTCAACTTTTCTTTAAAAATCCTT
1 TTTTGA-ATTTTTATTTT-AAGA-AAAATTGATACTTTCAACTTTTCCTTAAAAATATTT
* * * *
7220415 TTCTGAAATCTTTATTTTCAAGGAAAATTTATACTTTCAACTTTTCCTTAAAAATATTT
1 TTTTG-AATTTTTATTTT-AAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATATTT
*
7220474 TTTTGAAGTTTTTATTCTTAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTT
1 TTTTGAA-TTTTTATT-TTAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATA-TTT
* * * ** *
7220534 TTTTGAATTTTTATTTTAACAAAAATTGAAACTTTCAACTTCT-AATGAAAATCATTT
1 TTTTGAATTTTTATTTTAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAAT-ATTT
*
7220591 TTTTAAAGTTTTT-TTTTAAGAAAAATTGATACTTTCAACTTTT-CTTCAAAAATATTT
1 TTTTGAA-TTTTTATTTTAAGAAAAATTGATACTTTCAACTTTTCCTT-AAAAATATTT
* * * * * *
7220648 GTTTGAAAATTTTT-TTGCT-AGGAAAATTGATACTTTGAACTTTTCTTTAAAAACATTTT
1 TTTTG--AATTTTTATT-TTAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATA-TTT
* *
7220707 TTTCTAAAATTTTATTTTAAGAAAA
1 TTT-TGAATTTTTATTTTAAGAAAA
7220732 TCATTGAAAA
Statistics
Matches: 315, Mismatches: 44, Indels: 36
0.80 0.11 0.09
Matches are distributed among these distances:
57 49 0.16
58 81 0.26
59 120 0.38
60 15 0.05
61 50 0.16
ACGTcount: A:0.35, C:0.10, G:0.06, T:0.49
Consensus pattern (57 bp):
TTTTGAATTTTTATTTTAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATATTT
Found at i:7220674 original size:115 final size:112
Alignment explanation
Indices: 7220309--7220731 Score: 399
Period size: 115 Copynumber: 3.6 Consensus size: 112
7220299 GATATTTTTA
* *
7220309 TTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAAT-ATTTTTTTTTGAGAA-TTTTATT
1 TTTTCTAGGAAAATTGATACTTTCAACTTTT-CTTAAAAATCA--TTTTTTT-A-AAGTTTT-TT
* * * *
7220372 TTCAA-AGAAAATTGATACTTTCAACTTTTCTTTAAAAATCCTTTTCTGAAATCTTT
60 TTTAAGA-AAAATTGATACTTTCAACTTTTCTTCAAAAAT-ATTTTTTGAAA--TTT
* * *
7220428 ATTTTCAAGGAAAATTTATACTTTCAACTTTTCCTTAAAAAT-ATTTTTTTGAAGTTTTTATTCT
1 -TTTTCTAGGAAAATTGATACTTTCAACTTTT-CTTAAAAATCATTTTTTTAAAGTTTTT-TT-T
*
7220492 TAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTG-AATTT
62 TAAGAAAAATTGATACTTTCAACTTTTCTTCAAAAATA--TTTTTTGAAATTT
* ** * * ** *
7220544 TTATTTTAACAAAAATTGAAACTTTCAACTTCTAATGAAAATCATTTTTTTAAAGTTTTTTTTTA
1 TT-TTCT-AGGAAAATTGATACTTTCAACTTTTCTTAAAAATCATTTTTTTAAAGTTTTTTTTTA
7220609 AGAAAAATTGATACTTTCAACTTTTCTTCAAAAATATTTGTTTGAAAATTT
64 AGAAAAATTGATACTTTCAACTTTTCTTCAAAAATATTT-TTTG-AAATTT
* * *
7220660 TTTTGCTAGGAAAATTGATACTTTGAACTTTTCTTTAAAAA-CATTTTTTTCTAAAATTTTATTT
1 TTTT-CTAGGAAAATTGATACTTTCAACTTTTC-TTAAAAATCA-TTTTTT-TAAAGTTTTTTTT
7220724 TAAGAAAA
62 TAAGAAAA
7220732 TCATTGAAAA
Statistics
Matches: 256, Mismatches: 31, Indels: 35
0.80 0.10 0.11
Matches are distributed among these distances:
113 3 0.01
114 4 0.02
115 64 0.25
116 35 0.14
117 61 0.24
118 42 0.16
119 7 0.03
120 40 0.16
ACGTcount: A:0.35, C:0.11, G:0.06, T:0.48
Consensus pattern (112 bp):
TTTTCTAGGAAAATTGATACTTTCAACTTTTCTTAAAAATCATTTTTTTAAAGTTTTTTTTTAAG
AAAAATTGATACTTTCAACTTTTCTTCAAAAATATTTTTTGAAATTT
Found at i:7221312 original size:14 final size:13
Alignment explanation
Indices: 7221282--7221313 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
7221272 CAAAAAATTC
7221282 AAAAACATCTTCG
1 AAAAACATCTTCG
7221295 AAAAACATCTTCG
1 AAAAACATCTTCG
7221308 AAAAAC
1 AAAAAC
7221314 CAATTAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.53, C:0.22, G:0.06, T:0.19
Consensus pattern (13 bp):
AAAAACATCTTCG
Found at i:7222884 original size:144 final size:142
Alignment explanation
Indices: 7222566--7222892 Score: 329
Period size: 144 Copynumber: 2.3 Consensus size: 142
7222556 TTTTAGGTGT
*
7222566 ATTAAAAACTTTGATCACACCTTAAGATA-TATGAAATTACTAAAATACTCTTAAAGACATTTTC
1 ATTAAAAACTTTGATTACACCTTAAGA-AGTATGAAATTACTAAAATACTCTTAAAGACATTTTC
* *
7222630 GTAAATTGACCTTCTCGATGTTAGAATTAACAAAAAGCTTTAGATCATGATTTGATATTATTTGA
65 GTAAATTGACCTTCTCGAGGTTAGAATTAACAAAAAGCTTTAGATCATGATTTGAAATTATTTGA
*
7222695 TGATTTTTAAAGT
130 TGATTTTTAAAGC
* * * * * ***
7222708 ATTGAAAA-TCTTGATTATATCTCAA-AAGGTATGAAATTATTAAAATACTCTTAAAGGTGTTTT
1 ATTAAAAACT-TTGATTACACCTTAAGAA-GTATGAAATTACTAAAATACTCTTAAAGACATTTT
* * * ** * ** * * * *
7222771 CGTAATTTGATCTTTTTTAGGTT-GATTTTTTTGCAAAATGTTTTAGATCATGTTTTTAAATTAT
64 CGTAAATTGACCTTCTCGAGGTTAGA---ATTAACAAAAAGCTTTAGATCATGATTTGAAATTAT
* *
7222835 TTGATGATTTTTTACGC
126 TTGATGATTTTTAAAGC
*
7222852 ATTAAAAACTTTGGTTACACCTTAAGAAGTATGAAATTACT
1 ATTAAAAACTTTGATTACACCTTAAGAAGTATGAAATTACT
7222893 GATAACTCTC
Statistics
Matches: 145, Mismatches: 32, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
140 1 0.01
141 4 0.03
142 65 0.45
144 72 0.50
145 3 0.02
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.42
Consensus pattern (142 bp):
ATTAAAAACTTTGATTACACCTTAAGAAGTATGAAATTACTAAAATACTCTTAAAGACATTTTCG
TAAATTGACCTTCTCGAGGTTAGAATTAACAAAAAGCTTTAGATCATGATTTGAAATTATTTGAT
GATTTTTAAAGC
Found at i:7226254 original size:15 final size:15
Alignment explanation
Indices: 7226236--7226290 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
7226226 TTTAATAAAT
*
7226236 TAAAAAATATAGATA
1 TAAAAAATATATATA
* *
7226251 TAAAATATATATAAA
1 TAAAAAATATATATA
7226266 TAAAATAATAATATATA
1 TAAAA-AAT-ATATATA
7226283 TAATAAAA
1 TAA-AAAA
7226291 ATTAAAAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
15 17 0.53
16 2 0.06
17 11 0.34
18 2 0.06
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (15 bp):
TAAAAAATATATATA
Found at i:7226262 original size:17 final size:15
Alignment explanation
Indices: 7226228--7226285 Score: 52
Period size: 15 Copynumber: 3.9 Consensus size: 15
7226218 GATAAAAATT
7226228 TAATA-AAT-TAAAA
1 TAATATAATATAAAA
7226241 -AATATAGATATAAAA
1 TAATATA-ATATAAAA
7226256 TATATATAA-ATAAAA
1 TA-ATATAATATAAAA
7226271 TAATAATATATATAA
1 TAAT-ATA-ATATAA
7226286 TAAAAATTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
12 4 0.11
13 1 0.03
14 4 0.11
15 16 0.43
16 3 0.08
17 9 0.24
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.33
Consensus pattern (15 bp):
TAATATAATATAAAA
Found at i:7226267 original size:23 final size:21
Alignment explanation
Indices: 7226250--7226290 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
7226240 AAATATAGAT
7226250 ATAA-AATATATATAAATAAA
1 ATAATAATATATATAAATAAA
7226270 ATAATAATATATAT-AATAAA
1 ATAATAATATATATAAATAAA
7226290 A
1 A
7226291 ATTAAAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (21 bp):
ATAATAATATATATAAATAAA
Found at i:7226301 original size:23 final size:21
Alignment explanation
Indices: 7226252--7226290 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7226242 ATATAGATAT
7226252 AAAATATATATAAATAAAATA
1 AAAATATATATAAATAAAATA
*
7226273 ATAATATATAT-AATAAAA
1 AAAATATATATAAATAAAA
7226291 ATTAAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (21 bp):
AAAATATATATAAATAAAATA
Found at i:7226301 original size:26 final size:28
Alignment explanation
Indices: 7226230--7226307 Score: 79
Period size: 30 Copynumber: 2.8 Consensus size: 28
7226220 TAAAAATTTA
*
7226230 ATAAATTAAAAAATATAGATATAAAATAT
1 ATAAATTAAAAAATA-AAATATAAAATAT
* * *
7226259 ATATAAATAAAATAATAATATATATAATA-
1 ATA-AATTAAAA-AATAAAATATAAAATAT
7226288 A-AAATTAAAAAATAAAATAT
1 ATAAATTAAAAAATAAAATAT
7226308 CTAAGGATGA
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
26 9 0.21
27 7 0.17
28 1 0.02
29 4 0.10
30 17 0.40
31 4 0.10
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.31
Consensus pattern (28 bp):
ATAAATTAAAAAATAAAATATAAAATAT
Found at i:7227431 original size:14 final size:13
Alignment explanation
Indices: 7227407--7227486 Score: 61
Period size: 14 Copynumber: 5.8 Consensus size: 13
7227397 ATAACATCTA
7227407 TAAACTCTAAATCC
1 TAAAC-CTAAATCC
*
7227421 TAAACCTTAAATAC
1 TAAACC-TAAATCC
* *
7227435 TAAACGCAAAACCC
1 TAAAC-CTAAATCC
* * *
7227449 AAAATCTAAACCC
1 TAAACCTAAATCC
7227462 TAAACCTCAAATCC
1 TAAACCT-AAATCC
7227476 TAAACCCTAAA
1 TAAA-CCTAAA
7227487 CTAAATCTGG
Statistics
Matches: 52, Mismatches: 10, Indels: 8
0.74 0.14 0.11
Matches are distributed among these distances:
13 13 0.25
14 35 0.67
15 4 0.08
ACGTcount: A:0.49, C:0.30, G:0.01, T:0.20
Consensus pattern (13 bp):
TAAACCTAAATCC
Found at i:7227437 original size:21 final size:20
Alignment explanation
Indices: 7227407--7227491 Score: 82
Period size: 21 Copynumber: 4.2 Consensus size: 20
7227397 ATAACATCTA
* *
7227407 TAAACTCTAAATCCTAAACC
1 TAAAATCTAAACCCTAAACC
* * *
7227427 TTAAATACTAAACGCAAAACC
1 TAAAAT-CTAAACCCTAAACC
*
7227448 CAAAATCTAAACCCTAAACC
1 TAAAATCTAAACCCTAAACC
*
7227468 TCAAATCCTAAACCCTAAA-C
1 TAAAAT-CTAAACCCTAAACC
7227488 TAAA
1 TAAA
7227492 TCTGGAACCT
Statistics
Matches: 51, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
20 24 0.47
21 27 0.53
ACGTcount: A:0.49, C:0.29, G:0.01, T:0.20
Consensus pattern (20 bp):
TAAAATCTAAACCCTAAACC
Found at i:7235164 original size:22 final size:22
Alignment explanation
Indices: 7235139--7235214 Score: 59
Period size: 22 Copynumber: 3.5 Consensus size: 22
7235129 TATCAAACTT
7235139 AAAATCAATTAACATTAAGTGA
1 AAAATCAATTAACATTAAGTGA
* * * *
7235161 AAAA--ACTTAAATATCTAACT-T
1 AAAATCAATT-AACAT-TAAGTGA
*
7235182 AAAATCAATTAACATCAAGTGA
1 AAAATCAATTAACATTAAGTGA
7235204 AAAACTCAATT
1 AAAA-TCAATT
7235215 TAAATATAAA
Statistics
Matches: 39, Mismatches: 9, Indels: 11
0.66 0.15 0.19
Matches are distributed among these distances:
20 3 0.08
21 11 0.28
22 16 0.41
23 9 0.23
ACGTcount: A:0.54, C:0.13, G:0.05, T:0.28
Consensus pattern (22 bp):
AAAATCAATTAACATTAAGTGA
Found at i:7235165 original size:23 final size:23
Alignment explanation
Indices: 7235139--7235214 Score: 54
Period size: 23 Copynumber: 3.4 Consensus size: 23
7235129 TATCAAACTT
7235139 AAAATCAATTAACATTAAGTGAA
1 AAAATCAATTAACATTAAGTGAA
* * *
7235162 AAAA-C--TTAAATATCTAACT--T
1 AAAATCAATT-AACAT-TAAGTGAA
*
7235182 AAAATCAATTAACATCAAGTGAA
1 AAAATCAATTAACATTAAGTGAA
*
7235205 AAACTCAATT
1 AAAATCAATT
7235215 TAAATATAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
20 6 0.16
21 8 0.21
22 9 0.24
23 15 0.39
ACGTcount: A:0.54, C:0.13, G:0.05, T:0.28
Consensus pattern (23 bp):
AAAATCAATTAACATTAAGTGAA
Found at i:7235172 original size:43 final size:43
Alignment explanation
Indices: 7235124--7235207 Score: 150
Period size: 43 Copynumber: 2.0 Consensus size: 43
7235114 TAATATCATG
*
7235124 TTAAATATCAAACTTAAAATCAATTAACATTAAGTGAAAAAAC
1 TTAAATATCAAACTTAAAATCAATTAACATCAAGTGAAAAAAC
*
7235167 TTAAATATCTAACTTAAAATCAATTAACATCAAGTGAAAAA
1 TTAAATATCAAACTTAAAATCAATTAACATCAAGTGAAAAA
7235208 CTCAATTTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.55, C:0.12, G:0.05, T:0.29
Consensus pattern (43 bp):
TTAAATATCAAACTTAAAATCAATTAACATCAAGTGAAAAAAC
Found at i:7235206 original size:21 final size:21
Alignment explanation
Indices: 7235139--7235206 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
7235129 TATCAAACTT
*
7235139 AAAATCAATTAACATTAAGTG
1 AAAATCAATTAACATCAAGTG
* * *
7235160 AAAA--AACTTAAATATCTAACTT
1 AAAATCAA-TT-AACATC-AAGTG
7235182 AAAATCAATTAACATCAAGTG
1 AAAATCAATTAACATCAAGTG
7235203 AAAA
1 AAAA
7235207 ACTCAATTTA
Statistics
Matches: 35, Mismatches: 7, Indels: 10
0.67 0.13 0.19
Matches are distributed among these distances:
19 2 0.06
20 2 0.06
21 15 0.43
22 12 0.34
23 2 0.06
24 2 0.06
ACGTcount: A:0.56, C:0.12, G:0.06, T:0.26
Consensus pattern (21 bp):
AAAATCAATTAACATCAAGTG
Found at i:7236926 original size:12 final size:12
Alignment explanation
Indices: 7236903--7236937 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
7236893 TTTTATACTA
*
7236903 AAAAAATTAAAT
1 AAAAAATAAAAT
*
7236915 AAAAACTAAAAT
1 AAAAAATAAAAT
7236927 AAAAAATAAAA
1 AAAAAATAAAA
7236938 ATCGATAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (12 bp):
AAAAAATAAAAT
Found at i:7239910 original size:2 final size:2
Alignment explanation
Indices: 7239899--7239940 Score: 56
Period size: 2 Copynumber: 23.0 Consensus size: 2
7239889 CAAACGGAAT
7239899 TA TA -A TA TA TA TA TA TA TA TA TA TA TA -A TA T- TA TA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7239937 TA TA
1 TA TA
7239941 AATCTAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
1 4 0.11
2 32 0.89
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:7239920 original size:12 final size:11
Alignment explanation
Indices: 7239899--7239940 Score: 68
Period size: 12 Copynumber: 3.8 Consensus size: 11
7239889 CAAACGGAAT
7239899 TATAATATATA
1 TATAATATATA
7239910 TATATATATATA
1 TATA-ATATATA
7239922 TATAATAT-TA
1 TATAATATATA
7239932 TATAATATA
1 TATAATATA
7239941 AATCTAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.34
11 8 0.28
12 11 0.38
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
TATAATATATA
Found at i:7244444 original size:13 final size:13
Alignment explanation
Indices: 7244426--7244450 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7244416 CAAAATATTA
7244426 TATCTAAAATTTG
1 TATCTAAAATTTG
7244439 TATCTAAAATTT
1 TATCTAAAATTT
7244451 ATTTTACTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.04, T:0.48
Consensus pattern (13 bp):
TATCTAAAATTTG
Found at i:7251292 original size:23 final size:25
Alignment explanation
Indices: 7251245--7251296 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 25
7251235 TACATAATAT
7251245 ATAATAATTCATCGATTTATCAAAAA
1 ATAATAATTCATCGATTTA-CAAAAA
* *
7251271 ATAATGATTCATCGA-TTAAAAAAA
1 ATAATAATTCATCGATTTACAAAAA
7251295 AT
1 AT
7251297 CAAATAACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 7 0.29
25 3 0.12
26 14 0.58
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.33
Consensus pattern (25 bp):
ATAATAATTCATCGATTTACAAAAA
Found at i:7255876 original size:52 final size:52
Alignment explanation
Indices: 7255790--7255946 Score: 217
Period size: 52 Copynumber: 3.0 Consensus size: 52
7255780 TATAACCATA
* *
7255790 CAAACTTG-CTCATTAAGAATCCCTCTCCTCTTAGAATTCTTCTCTTGTAAGT
1 CAAACTTGCCT-ATTAAGAATCCCTTTCCTCTTAGAATTCTTCTCTTGCAAGT
* * *
7255842 TAAACTTGCCTATTAAGAATCTCTTTCCTTTTAGAATTCTTCTCTTGCAAGT
1 CAAACTTGCCTATTAAGAATCCCTTTCCTCTTAGAATTCTTCTCTTGCAAGT
* * * *
7255894 CAAACTTACCTATTAAGAATCCCTTTTCTCTTAAAATTCTTCTTTTGCAAGT
1 CAAACTTGCCTATTAAGAATCCCTTTCCTCTTAGAATTCTTCTCTTGCAAGT
7255946 C
1 C
7255947 TTCTTGTCCA
Statistics
Matches: 92, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
52 90 0.98
53 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.08, T:0.41
Consensus pattern (52 bp):
CAAACTTGCCTATTAAGAATCCCTTTCCTCTTAGAATTCTTCTCTTGCAAGT
Found at i:7255987 original size:11 final size:11
Alignment explanation
Indices: 7255971--7256012 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
7255961 GCAATATCTG
7255971 ACAAATCTCAT
1 ACAAATCTCAT
7255982 ACAAATCTC-T
1 ACAAATCTCAT
* *
7255992 AACAATTCTCAA
1 -ACAAATCTCAT
7256004 ACAAATCTC
1 ACAAATCTC
7256013 TTATGGGATT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
10 1 0.04
11 25 0.96
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.26
Consensus pattern (11 bp):
ACAAATCTCAT
Found at i:7255996 original size:22 final size:22
Alignment explanation
Indices: 7255971--7256013 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
7255961 GCAATATCTG
*
7255971 ACAAATCTCATACAAATCTCTA
1 ACAAATCTCAAACAAATCTCTA
*
7255993 ACAATTCTCAAACAAATCTCT
1 ACAAATCTCAAACAAATCTCT
7256014 TATGGGATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.44, C:0.28, G:0.00, T:0.28
Consensus pattern (22 bp):
ACAAATCTCAAACAAATCTCTA
Found at i:7266322 original size:18 final size:19
Alignment explanation
Indices: 7266275--7266323 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
7266265 CATTTATACA
*
7266275 GTATTTTTAAATACTCATAT
1 GTATTTTTTAATACT-ATAT
* *
7266295 TTACTTTTTAATACT-TAT
1 GTATTTTTTAATACTATAT
7266313 GTATTTTTTAA
1 GTATTTTTTAA
7266324 GTTATACATT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
18 12 0.50
20 12 0.50
ACGTcount: A:0.31, C:0.08, G:0.04, T:0.57
Consensus pattern (19 bp):
GTATTTTTTAATACTATAT
Found at i:7266774 original size:129 final size:129
Alignment explanation
Indices: 7266596--7266835 Score: 318
Period size: 129 Copynumber: 1.9 Consensus size: 129
7266586 TACACACCAC
* * *
7266596 ATTTATTACATTAAGGCATATGGGCAAATACAAACCCCACTTCTTATTGATACACTCAACGCTCC
1 ATTTATTACATTAAGGCATATGGGCAAACACAAACCCCACTTCTTATTGATACACCCAACGCACC
* * * *
7266661 CTAATGCACCATTTATTATGTCAAGGTTTTAAGCTAACGCACTCAACGTACCTTTTTGTGACAT
66 CTAATGCACCATTTATTATGTCAAGGCTCTAAGCCAACACACTCAACGTACCTTTTTGTGACAT
* * ** ** * *
7266725 ATTTGTTACATTAAGGCGTATGGGTGAACACAAACCCCACTTCTTATTGATATGCCCAATGCACT
1 ATTTATTACATTAAGGCATATGGGCAAACACAAACCCCACTTCTTATTGATACACCCAACGCACC
* * *
7266790 CTAGTGCACCATTTATTGTGTTAAGGCTCTAAGCCAACACACTCAA
66 CTAATGCACCATTTATTATGTCAAGGCTCTAAGCCAACACACTCAA
7266836 TGTGCCCCAG
Statistics
Matches: 93, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
129 93 1.00
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.31
Consensus pattern (129 bp):
ATTTATTACATTAAGGCATATGGGCAAACACAAACCCCACTTCTTATTGATACACCCAACGCACC
CTAATGCACCATTTATTATGTCAAGGCTCTAAGCCAACACACTCAACGTACCTTTTTGTGACAT
Found at i:7267374 original size:160 final size:160
Alignment explanation
Indices: 7267104--7267425 Score: 563
Period size: 160 Copynumber: 2.0 Consensus size: 160
7267094 ATTACCTTAC
* * *
7267104 AACAATGTGCCATACTTATTATTTTTAACAAGCCATTTTATTTCCATTATTTGATTTAAATATTT
1 AACAAGGTGCCATACTTATTATTTTTAACAAGCCATTTTATTTCCACTATTTCATTTAAATATTT
*
7267169 TAAAGCAATTCTCACTTAGTGATCAACTCTTCCTACAATTCTTAAAGCCATCTAATAGGTTACAC
66 TAAAGCAATTCTCACTTAGTGATCAACTCTTCCTACAATTCTTAAAGCCATCTAATAAGTTACAC
7267234 CATTAAATTTGATATGCTATCTGCTTGATA
131 CATTAAATTTGATATGCTATCTGCTTGATA
7267264 AACAAGGTGCCATACTTATTATTTTTAACAAGCCATTTTATTTCCACTATTTCATTTAAATATTT
1 AACAAGGTGCCATACTTATTATTTTTAACAAGCCATTTTATTTCCACTATTTCATTTAAATATTT
* * *
7267329 TAAGGTAGTTCTCACTTAGTGATCAACTCTTCCTACAATTCTTAAAGCCATCTAATAAGTTACAC
66 TAAAGCAATTCTCACTTAGTGATCAACTCTTCCTACAATTCTTAAAGCCATCTAATAAGTTACAC
* *
7267394 CATTAAATTTGATATGTTATTTGCTTGATA
131 CATTAAATTTGATATGCTATCTGCTTGATA
7267424 AA
1 AA
7267426 GAAAAGTTGT
Statistics
Matches: 153, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
160 153 1.00
ACGTcount: A:0.33, C:0.18, G:0.09, T:0.41
Consensus pattern (160 bp):
AACAAGGTGCCATACTTATTATTTTTAACAAGCCATTTTATTTCCACTATTTCATTTAAATATTT
TAAAGCAATTCTCACTTAGTGATCAACTCTTCCTACAATTCTTAAAGCCATCTAATAAGTTACAC
CATTAAATTTGATATGCTATCTGCTTGATA
Found at i:7271281 original size:16 final size:14
Alignment explanation
Indices: 7271248--7271274 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7271238 AAGGCAGGTG
7271248 TGAAACAACACCTT
1 TGAAACAACACCTT
7271262 TGAAACAACACCT
1 TGAAACAACACCT
7271275 CTTTGAATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.30, G:0.07, T:0.19
Consensus pattern (14 bp):
TGAAACAACACCTT
Found at i:7275808 original size:21 final size:21
Alignment explanation
Indices: 7275742--7275808 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
7275732 TAAATTTTTA
*
7275742 AAATCTCTAAATTTTGG-ATC
1 AAATTTCTAAATTTTGGAATC
**
7275762 AAATTTC-AAGACTTTTATAATC
1 AAATTTCTAA-A-TTTTGGAATC
*
7275784 -AATTTCTAAATTTTGGAAAC
1 AAATTTCTAAATTTTGGAATC
7275804 AAATT
1 AAATT
7275809 CCAAGACTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 9
0.71 0.12 0.18
Matches are distributed among these distances:
19 2 0.06
20 14 0.39
21 15 0.42
22 5 0.14
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.40
Consensus pattern (21 bp):
AAATTTCTAAATTTTGGAATC
Found at i:7276800 original size:21 final size:22
Alignment explanation
Indices: 7276774--7276819 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
7276764 TTTATATATC
7276774 TATA-TTTAAAAAATAATATTT
1 TATATTTTAAAAAATAATATTT
7276795 TATATTTTAAAAAATAATATTT
1 TATATTTTAAAAAATAATATTT
7276817 TAT
1 TAT
7276820 TAATTTCGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 4 0.17
22 20 0.83
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
TATATTTTAAAAAATAATATTT
Found at i:7277485 original size:22 final size:21
Alignment explanation
Indices: 7277427--7277485 Score: 75
Period size: 22 Copynumber: 2.8 Consensus size: 21
7277417 TTCATGCTTA
*
7277427 ATCATGTAATAATAT-ATAAT
1 ATCATGCAATAATATAATAAT
* *
7277447 ATCATGCAAAAAAATAATAATT
1 ATCATGCAATAATATAATAA-T
7277469 ATCATGCAATAATATAA
1 ATCATGCAATAATATAA
7277486 ACTACCATGC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 12 0.38
21 4 0.12
22 16 0.50
ACGTcount: A:0.54, C:0.08, G:0.05, T:0.32
Consensus pattern (21 bp):
ATCATGCAATAATATAATAAT
Found at i:7277533 original size:16 final size:16
Alignment explanation
Indices: 7277514--7277561 Score: 60
Period size: 18 Copynumber: 2.9 Consensus size: 16
7277504 TAATAACCAT
7277514 TCATGCAAATATATAA
1 TCATGCAAATATATAA
*
7277530 TCATGCAATTAAATATAA
1 TCATGCAA--ATATATAA
*
7277548 TCATACAAATATAT
1 TCATGCAAATATAT
7277562 TAGTAATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 13 0.48
18 14 0.52
ACGTcount: A:0.50, C:0.12, G:0.04, T:0.33
Consensus pattern (16 bp):
TCATGCAAATATATAA
Found at i:7277547 original size:18 final size:18
Alignment explanation
Indices: 7277524--7277596 Score: 74
Period size: 18 Copynumber: 3.9 Consensus size: 18
7277514 TCATGCAAAT
7277524 ATATAATCATGCAATTAA
1 ATATAATCATGCAATTAA
* *
7277542 ATATAATCATACAAATATA
1 ATATAATCATGCAATTA-A
* ** *
7277561 TTAGTAATTTTGTAATTAA
1 ATA-TAATCATGCAATTAA
7277580 ATATAATCATGCAATTA
1 ATATAATCATGCAATTA
7277597 TGCATACAAT
Statistics
Matches: 41, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
18 26 0.63
19 6 0.15
20 9 0.22
ACGTcount: A:0.48, C:0.08, G:0.05, T:0.38
Consensus pattern (18 bp):
ATATAATCATGCAATTAA
Found at i:7277672 original size:22 final size:21
Alignment explanation
Indices: 7277631--7277684 Score: 76
Period size: 22 Copynumber: 2.6 Consensus size: 21
7277621 GCAATTAGAT
7277631 ATCATGC-AAATATAATATTA
1 ATCATGCAAAATATAATATTA
7277651 ATCATGCAATAATA-AATAATTA
1 ATCATGCAA-AATATAAT-ATTA
7277673 ATCATGCAAAAT
1 ATCATGCAAAAT
7277685 CATGCCATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.23
21 7 0.23
22 17 0.55
ACGTcount: A:0.52, C:0.11, G:0.06, T:0.31
Consensus pattern (21 bp):
ATCATGCAAAATATAATATTA
Found at i:7277779 original size:24 final size:24
Alignment explanation
Indices: 7277745--7277802 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
7277735 ATGCAATCAT
* *
7277745 ATCATAACATGCAATAATTATAAA
1 ATCATATCATGCAATAATCATAAA
7277769 ATCATATCATGCAATAATCATAAA
1 ATCATATCATGCAATAATCATAAA
7277793 ATCATATCAT
1 ATCATATCAT
7277803 ATCATTCAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.50, C:0.16, G:0.03, T:0.31
Consensus pattern (24 bp):
ATCATATCATGCAATAATCATAAA
Found at i:7277801 original size:29 final size:27
Alignment explanation
Indices: 7277739--7277814 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 27
7277729 CATACCATGC
* *
7277739 AATCATATCATAACATGCAATAATTAT
1 AATCATATCATATCATGCAATAATTAA
7277766 AA--A-ATCATATCATGCAATAATCATAA
1 AATCATATCATATCATGCAATAAT--TAA
*
7277792 AATCATATCATATCATTCAATAA
1 AATCATATCATATCATGCAATAA
7277815 AAAATAATAA
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
24 17 0.41
25 1 0.02
26 4 0.10
27 2 0.05
28 1 0.02
29 16 0.39
ACGTcount: A:0.50, C:0.16, G:0.03, T:0.32
Consensus pattern (27 bp):
AATCATATCATATCATGCAATAATTAA
Found at i:7277853 original size:24 final size:24
Alignment explanation
Indices: 7277816--7277917 Score: 80
Period size: 24 Copynumber: 4.0 Consensus size: 24
7277806 ATTCAATAAA
*
7277816 AAATA-ATAAATAATCATGCAAAT
1 AAATATATTAATAATCATGCAAAT
7277839 AAATATATTAATAATCATGCAATCACACAAAT
1 AAATATATTAATAATCATG--------CAAAT
*
7277871 AAATATATTAATAATCTTGCAAAT
1 AAATATATTAATAATCATGCAAAT
* * *
7277895 ATATAGATTAATAATCCTGCAAA
1 AAATATATTAATAATCATGCAAA
7277918 GATTAATCAT
Statistics
Matches: 65, Mismatches: 5, Indels: 17
0.75 0.06 0.20
Matches are distributed among these distances:
23 5 0.08
24 37 0.57
32 23 0.35
ACGTcount: A:0.53, C:0.12, G:0.05, T:0.30
Consensus pattern (24 bp):
AAATATATTAATAATCATGCAAAT
Found at i:7280845 original size:209 final size:211
Alignment explanation
Indices: 7280522--7280943 Score: 613
Period size: 209 Copynumber: 2.0 Consensus size: 211
7280512 ATTGAGTCTT
* *
7280522 TGCATTTCATCTGAACCTTCATTGATCACTTTCCAATGTCTCTTCAAAAACATTTCAACATCTAT
1 TGCATCTCATCTGAACCTTCATTGATCACCTTCCAATGTCTCTTCAAAAACATTTCAACATCTAT
*
7280587 TTTTTGTTCTATTTTCCAAATGTATACAATAAATGCAAGCAATGAATGAAAAGATTTTTCAAGAT
66 TTTTTGTTCTATTTTCCAAATGTATACAATAAATGCAAGCAATGAATGAAAA-AATTTTCAAGAT
* *
7280652 TCATTTCAATTTCATGATTCAATCTTTAGTTTTCTTG-TTTTTTTCAAACATGCATGATGCAATG
130 TCACTACAATTTCATGATTCAATCTTTAGTTTTCTTGTTTTTTTTCAAACATGCATGATGCAATG
7280716 TTCTCAATGTG-ATGCA
195 TTCTCAATGTGAATGCA
* * *
7280732 TGCATCTCATCTGAACCTTCATTGATCACCTTCTAATGT-TTTTCAAAAATATTTCAACATCTAT
1 TGCATCTCATCTGAACCTTCATTGATCACCTTCCAATGTCTCTTCAAAAACATTTCAACATCTAT
* *
7280796 TTTTCAT-TTC-ACTTTT-TAAATGTATATAATAAATGCAAGCAATGAATGAAAAAATTTTCAAG
66 TTTT--TGTTCTA-TTTTCCAAATGTATACAATAAATGCAAGCAATGAATGAAAAAATTTTCAAG
** * * ** *
7280858 ATTCACTACAATTTTGTGATTTAATTTTTAGTTTTCTTGTTTTTTTTCAGGCATGCATGATGTAA
128 ATTCACTACAATTTCATGATTCAATCTTTAGTTTTCTTGTTTTTTTTCAAACATGCATGATGCAA
7280923 TGTTCTCAATGTGAATGCA
193 TGTTCTCAATGTGAATGCA
7280942 TG
1 TG
7280944 GATATAATAC
Statistics
Matches: 190, Mismatches: 17, Indels: 10
0.88 0.08 0.05
Matches are distributed among these distances:
208 42 0.22
209 97 0.51
210 50 0.26
211 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.11, T:0.42
Consensus pattern (211 bp):
TGCATCTCATCTGAACCTTCATTGATCACCTTCCAATGTCTCTTCAAAAACATTTCAACATCTAT
TTTTTGTTCTATTTTCCAAATGTATACAATAAATGCAAGCAATGAATGAAAAAATTTTCAAGATT
CACTACAATTTCATGATTCAATCTTTAGTTTTCTTGTTTTTTTTCAAACATGCATGATGCAATGT
TCTCAATGTGAATGCA
Found at i:7281176 original size:23 final size:23
Alignment explanation
Indices: 7281145--7281196 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
7281135 AAAAATTTCT
* *
7281145 TATCAACATGGGTTATCATGCAC
1 TATCAACATGGGATATCATACAC
* *
7281168 TATCCACATGGGATATCCTACAC
1 TATCAACATGGGATATCATACAC
7281191 TATCAA
1 TATCAA
7281197 GTAATCTTAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (23 bp):
TATCAACATGGGATATCATACAC
Found at i:7289987 original size:29 final size:29
Alignment explanation
Indices: 7289945--7290006 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 29
7289935 AAGAAAAAAA
* *
7289945 AAGGTTAGTCAACATAACATAATATATAC
1 AAGGATAGTCAACATAACATAATAAATAC
7289974 AAGGATAGTCAACATAACATAATAAATAC
1 AAGGATAGTCAACATAACATAATAAATAC
7290003 AAGG
1 AAGG
7290007 CACAGTATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.52, C:0.13, G:0.13, T:0.23
Consensus pattern (29 bp):
AAGGATAGTCAACATAACATAATAAATAC
Done.