Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25814696
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 122000 characters in sequence are not A, C, G, or T
File 36 of 126
Found at i:7462049 original size:18 final size:18
Alignment explanation
Indices: 7461987--7462049 Score: 65
Period size: 18 Copynumber: 3.4 Consensus size: 18
7461977 AATAGAAGAC
7461987 TTAAAAAATAAAGTAAAAAA
1 TTAAAAAAT-AA-TAAAAAA
* *
7462007 TCAAATAA-AATAAAAAA
1 TTAAAAAATAATAAAAAA
* *
7462024 TTTAAAAATAACAAAAAA
1 TTAAAAAATAATAAAAAA
7462042 TTAAAAAA
1 TTAAAAAA
7462050 AAAGAGAGAA
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
17 12 0.34
18 17 0.49
20 6 0.17
ACGTcount: A:0.75, C:0.03, G:0.02, T:0.21
Consensus pattern (18 bp):
TTAAAAAATAATAAAAAA
Found at i:7462128 original size:3 final size:3
Alignment explanation
Indices: 7462122--7462165 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
7462112 GGATAATAAT
7462122 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
7462166 TACTAATAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:7462175 original size:3 final size:3
Alignment explanation
Indices: 7462164--7462249 Score: 163
Period size: 3 Copynumber: 28.7 Consensus size: 3
7462154 CAACAACAAC
*
7462164 AAT ACT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7462212 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7462250 AATGGAAAAT
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
3 81 1.00
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7463338 original size:25 final size:22
Alignment explanation
Indices: 7463282--7463339 Score: 55
Period size: 25 Copynumber: 2.5 Consensus size: 22
7463272 TTTAAAGAAA
7463282 AAAGAATTA-AAAATCTTTATT
1 AAAGAATTATAAAATCTTTATT
*
7463303 TAAGAATATTATAAACATCTTTAGGTT
1 AAAG-A-ATTATAAA-ATCTTTA--TT
7463330 AAAGAATTAT
1 AAAGAATTAT
7463340 CTTATAATTC
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
21 3 0.10
22 1 0.03
23 4 0.14
24 3 0.10
25 12 0.41
26 1 0.03
27 5 0.17
ACGTcount: A:0.48, C:0.05, G:0.09, T:0.38
Consensus pattern (22 bp):
AAAGAATTATAAAATCTTTATT
Found at i:7464043 original size:19 final size:19
Alignment explanation
Indices: 7464015--7464057 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
7464005 TTAGGTTTTG
7464015 CTTAGCATTTGGGGATTCA
1 CTTAGCATTTGGGGATTCA
* * * *
7464034 TTTAGGATTTTGGGTTTCA
1 CTTAGCATTTGGGGATTCA
7464053 CTTAG
1 CTTAG
7464058 TGTTTCAAGT
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.19, C:0.12, G:0.26, T:0.44
Consensus pattern (19 bp):
CTTAGCATTTGGGGATTCA
Found at i:7465425 original size:33 final size:31
Alignment explanation
Indices: 7465366--7465426 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
7465356 TGCTTCCTTC
**
7465366 TCTTTTTTTTTTTTTTTTAGTTTTTTCTGCT
1 TCTTTTTTTTTTTAGTTTAGTTTTTTCTGCT
*
7465397 TCTTTTTTTTTTCTAGTTTGGTTCTTTTCT
1 TCTTTTTTTTTT-TAGTTTAGTT-TTTTCT
7465427 TATTTTGTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 12 0.48
32 7 0.28
33 6 0.24
ACGTcount: A:0.03, C:0.11, G:0.08, T:0.77
Consensus pattern (31 bp):
TCTTTTTTTTTTTAGTTTAGTTTTTTCTGCT
Found at i:7465426 original size:27 final size:26
Alignment explanation
Indices: 7465366--7465432 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 26
7465356 TGCTTCCTTC
* *
7465366 TCTTTT-TTTTTTTTTTTTAGTTTTT
1 TCTTTTCTTTTTTTTTTCTAGTTTGT
*
7465391 TCTGCTTCTTTTTTTTTTCTAGTTTGGT
1 TCT-TTTCTTTTTTTTTTCTAGTTT-GT
*
7465419 TCTTTTCTTATTTT
1 TCTTTTCTTTTTTT
7465433 GTCTCTTGCA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
25 3 0.09
26 2 0.06
27 25 0.74
28 4 0.12
ACGTcount: A:0.04, C:0.10, G:0.07, T:0.78
Consensus pattern (26 bp):
TCTTTTCTTTTTTTTTTCTAGTTTGT
Found at i:7468749 original size:17 final size:18
Alignment explanation
Indices: 7468722--7468756 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
7468712 TATAAGGTTT
*
7468722 TTTTATAAAAATATAATA
1 TTTTATAAAAATAAAATA
7468740 TTTT-TAAAAATAAAATA
1 TTTTATAAAAATAAAATA
7468757 CGTTAACTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
TTTTATAAAAATAAAATA
Found at i:7468893 original size:2 final size:2
Alignment explanation
Indices: 7468874--7468913 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
7468864 CGTGATAGTG
* *
7468874 TA TA TA T- TA CA TA CA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7468914 TTTGAAGGGA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:7469607 original size:6 final size:6
Alignment explanation
Indices: 7469596--7469633 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
7469586 CGAGGTTGAT
7469596 GGTGAC GGTGAC GGTGAC GGTGAC GGTGAC GGTGAC GG
1 GGTGAC GGTGAC GGTGAC GGTGAC GGTGAC GGTGAC GG
7469634 GTGCATCAGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.16, C:0.16, G:0.53, T:0.16
Consensus pattern (6 bp):
GGTGAC
Found at i:7475275 original size:12 final size:12
Alignment explanation
Indices: 7475257--7475296 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
7475247 TGGTGCATGT
7475257 ATAATAAAAACA
1 ATAATAAAAACA
* *
7475269 GTAATAATAACA
1 ATAATAAAAACA
*
7475281 ATAATAACAACA
1 ATAATAAAAACA
7475293 ATAA
1 ATAA
7475297 CACTATGCCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.68, C:0.10, G:0.03, T:0.20
Consensus pattern (12 bp):
ATAATAAAAACA
Found at i:7476843 original size:3 final size:3
Alignment explanation
Indices: 7476823--7476862 Score: 55
Period size: 3 Copynumber: 13.3 Consensus size: 3
7476813 TAAACACATG
*
7476823 ATA ATA ATTA ACA A-A ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7476863 GTAAAAAAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
2 2 0.06
3 29 0.85
4 3 0.09
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:7479839 original size:18 final size:18
Alignment explanation
Indices: 7479805--7479838 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7479795 TTAATGTGAC
*
7479805 ATAAATATCTAATAAAAT
1 ATAAATATATAATAAAAT
7479823 ATAAATATAT-ATAAAA
1 ATAAATATATAATAAAA
7479839 AAAATTAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (18 bp):
ATAAATATATAATAAAAT
Found at i:7479947 original size:10 final size:10
Alignment explanation
Indices: 7479934--7480057 Score: 99
Period size: 10 Copynumber: 12.3 Consensus size: 10
7479924 AAAATTATTT
7479934 AAAATTCTAA
1 AAAATTCTAA
*
7479944 AAAATTTTAA
1 AAAATTCTAA
*
7479954 AAAAATCTAA
1 AAAATTCTAA
7479964 AAAATT-TAA
1 AAAATTCTAA
7479973 AACAATTCTAA
1 AA-AATTCTAA
*
7479984 AAAATTGT-A
1 AAAATTCTAA
* * *
7479993 AAATTTTTGA
1 AAAATTCTAA
*
7480003 AAAGTTCTAAAA
1 AAAATTCT--AA
*
7480015 AAAATTCTAT
1 AAAATTCTAA
*
7480025 AAAATTGTAA
1 AAAATTCTAA
* *
7480035 ACAATTTTAA
1 AAAATTCTAA
*
7480045 AAAATTATAA
1 AAAATTCTAA
7480055 AAA
1 AAA
7480058 TAAAAAATGA
Statistics
Matches: 91, Mismatches: 18, Indels: 10
0.76 0.15 0.08
Matches are distributed among these distances:
9 12 0.13
10 66 0.73
11 5 0.05
12 8 0.09
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (10 bp):
AAAATTCTAA
Found at i:7480307 original size:16 final size:16
Alignment explanation
Indices: 7480280--7480317 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7480270 AAACATTCTA
*
7480280 AAAAATACAAAATTTT
1 AAAAATACAAAATATT
7480296 GAAAAATA-AAAATATT
1 -AAAAATACAAAATATT
7480312 AAAAAT
1 AAAAAT
7480318 TTCATAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 6 0.30
16 7 0.35
17 7 0.35
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (16 bp):
AAAAATACAAAATATT
Found at i:7480326 original size:20 final size:19
Alignment explanation
Indices: 7480301--7480375 Score: 71
Period size: 20 Copynumber: 3.8 Consensus size: 19
7480291 ATTTTGAAAA
7480301 ATAAAAATATTAAAAATTT
1 ATAAAAATATTAAAAATTT
7480320 CATAAAAA-ACTTCAAAAATTT
1 -ATAAAAATA-TT-AAAAATTT
* * *
7480341 TTGAAAAATTTTAAAAATAT
1 AT-AAAAATATTAAAAATTT
*
7480361 ATAAAAAAATTAAAA
1 ATAAAAATATTAAAA
7480376 TTGGAATATT
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
19 12 0.27
20 18 0.40
21 15 0.33
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.32
Consensus pattern (19 bp):
ATAAAAATATTAAAAATTT
Found at i:7480567 original size:10 final size:10
Alignment explanation
Indices: 7480534--7480568 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
7480524 AATTTTTATT
*
7480534 TTTTTTTGAA
1 TTTTTTGGAA
*
7480544 TTTCTTGGAA
1 TTTTTTGGAA
7480554 TTTTTTGGAA
1 TTTTTTGGAA
7480564 TTTTT
1 TTTTT
7480569 ATTAAAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.17, C:0.03, G:0.14, T:0.66
Consensus pattern (10 bp):
TTTTTTGGAA
Found at i:7480670 original size:21 final size:21
Alignment explanation
Indices: 7480644--7480695 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 21
7480634 TTAGTTTCAT
7480644 AATTTTTTAAAAAAT-ATTTCA
1 AATTTTTTAAAAAATAATTT-A
* *
7480665 GA-TTTTAAAAAAATAATTTA
1 AATTTTTTAAAAAATAATTTA
7480685 AATTTTTTAAA
1 AATTTTTTAAA
7480696 GATTTTTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 13 0.52
21 12 0.48
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (21 bp):
AATTTTTTAAAAAATAATTTA
Found at i:7480711 original size:22 final size:21
Alignment explanation
Indices: 7480645--7480747 Score: 61
Period size: 20 Copynumber: 5.0 Consensus size: 21
7480635 TAGTTTCATA
* * *
7480645 ATTTTTTAAAAAATATTTCAG
1 ATTTTTTAAAAATTTTTTTAG
* * ** *
7480666 A-TTTTAAAAAAATAATTTAA
1 ATTTTTTAAAAATTTTTTTAG
*
7480686 ATTTTTTAAAGATTTTTTTACG
1 ATTTTTTAAAAATTTTTTTA-G
*
7480708 A---TTTAAAATTTTTTTTTAG
1 ATTTTTTAAAA-ATTTTTTTAG
7480727 ATTTTTTAAAAATTTCTTTTA
1 ATTTTTTAAAAATTT-TTTTA
7480748 ATATTGGCGT
Statistics
Matches: 62, Mismatches: 13, Indels: 13
0.70 0.15 0.15
Matches are distributed among these distances:
19 8 0.13
20 24 0.39
21 17 0.27
22 13 0.21
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.54
Consensus pattern (21 bp):
ATTTTTTAAAAATTTTTTTAG
Found at i:7481601 original size:18 final size:18
Alignment explanation
Indices: 7481580--7481637 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
7481570 TTTTTCATCT
7481580 TTTTATTTTTAATTTCT-G
1 TTTTATTTTTAATTT-TAG
* *
7481598 TTTTAATTTTAGTTTTAG
1 TTTTATTTTTAATTTTAG
*
7481616 CTTTATTTTTTAATTTTA-
1 TTTTA-TTTTTAATTTTAG
7481634 TTTT
1 TTTT
7481638 TTGATTTTGG
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
17 1 0.03
18 21 0.66
19 10 0.31
ACGTcount: A:0.19, C:0.03, G:0.05, T:0.72
Consensus pattern (18 bp):
TTTTATTTTTAATTTTAG
Found at i:7481607 original size:25 final size:25
Alignment explanation
Indices: 7481580--7481644 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
7481570 TTTTTCATCT
*
7481580 TTTTATTTTTA-ATTTCTGTTTTAA
1 TTTTATTTTTAGATTTATGTTTTAA
* * *
7481604 TTTTAGTTTTAGCTTTATTTTTTAA
1 TTTTATTTTTAGATTTATGTTTTAA
*
7481629 TTTTATTTTTTGATTT
1 TTTTATTTTTAGATTT
7481645 TGGTATGTGA
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
24 10 0.30
25 23 0.70
ACGTcount: A:0.18, C:0.03, G:0.06, T:0.72
Consensus pattern (25 bp):
TTTTATTTTTAGATTTATGTTTTAA
Found at i:7481633 original size:13 final size:13
Alignment explanation
Indices: 7481580--7481645 Score: 57
Period size: 13 Copynumber: 5.3 Consensus size: 13
7481570 TTTTTCATCT
7481580 TTTTA-TTTTTAA
1 TTTTATTTTTTAA
* *
7481592 -TTTCTGTTTTAA
1 TTTTATTTTTTAA
* *
7481604 TTTTA-GTTTTAG
1 TTTTATTTTTTAA
*
7481616 CTTTATTTTTTAA
1 TTTTATTTTTTAA
*
7481629 TTTTATTTTTTGA
1 TTTTATTTTTTAA
7481642 TTTT
1 TTTT
7481646 GGTATGTGAT
Statistics
Matches: 42, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
11 3 0.07
12 16 0.38
13 23 0.55
ACGTcount: A:0.18, C:0.03, G:0.06, T:0.73
Consensus pattern (13 bp):
TTTTATTTTTTAA
Found at i:7481638 original size:12 final size:12
Alignment explanation
Indices: 7481580--7481638 Score: 57
Period size: 12 Copynumber: 4.8 Consensus size: 12
7481570 TTTTTCATCT
7481580 TTTTATTTTTAA
1 TTTTATTTTTAA
*
7481592 TTTCT-GTTTTAA
1 TTT-TATTTTTAA
* *
7481604 TTTTAGTTTTAG
1 TTTTATTTTTAA
*
7481616 CTTTATTTTTTAA
1 TTTTA-TTTTTAA
7481629 TTTTATTTTT
1 TTTTATTTTT
7481639 TGATTTTGGT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
11 1 0.03
12 27 0.71
13 10 0.26
ACGTcount: A:0.19, C:0.03, G:0.05, T:0.73
Consensus pattern (12 bp):
TTTTATTTTTAA
Found at i:7482055 original size:22 final size:21
Alignment explanation
Indices: 7482030--7482070 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
7482020 GTAATATCTA
*
7482030 TTTTGATCTTTCACTTTTTGGG
1 TTTTGAGCTTTCA-TTTTTGGG
*
7482052 TTTTGAGCTTTGATTTTTG
1 TTTTGAGCTTTCATTTTTG
7482071 AGATTCTGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.10, C:0.10, G:0.20, T:0.61
Consensus pattern (21 bp):
TTTTGAGCTTTCATTTTTGGG
Found at i:7482687 original size:14 final size:13
Alignment explanation
Indices: 7482647--7482689 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 13
7482637 GACATCTATA
7482647 ATTTGCATGTTTT
1 ATTTGCATGTTTT
7482660 ATTT--ATGATTTT
1 ATTTGCATG-TTTT
7482672 ATTTGCATGCTTTT
1 ATTTGCATG-TTTT
7482686 ATTT
1 ATTT
7482690 TTATATTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
11 3 0.12
12 8 0.31
13 4 0.15
14 11 0.42
ACGTcount: A:0.19, C:0.07, G:0.12, T:0.63
Consensus pattern (13 bp):
ATTTGCATGTTTT
Found at i:7482762 original size:25 final size:25
Alignment explanation
Indices: 7482734--7482822 Score: 85
Period size: 25 Copynumber: 3.6 Consensus size: 25
7482724 TTTTGCATAA
7482734 ATTTGCATGATTTTTATAATATTTT
1 ATTTGCATGATTTTTATAATATTTT
* *
7482759 ATTTGCATG-CTTTTATTATTATATTT
1 ATTTGCATGATTTTTA-TAATAT-TTT
** *
7482785 -TTTGCATGAATAATTATAATA-TAT
1 ATTTGCATG-ATTTTTATAATATTTT
7482809 ATTTGCATGATTTT
1 ATTTGCATGATTTT
7482823 GCATGAATTT
Statistics
Matches: 50, Mismatches: 9, Indels: 11
0.71 0.13 0.16
Matches are distributed among these distances:
24 10 0.20
25 30 0.60
26 7 0.14
27 3 0.06
ACGTcount: A:0.29, C:0.06, G:0.09, T:0.56
Consensus pattern (25 bp):
ATTTGCATGATTTTTATAATATTTT
Found at i:7482783 original size:22 final size:24
Alignment explanation
Indices: 7482734--7482784 Score: 61
Period size: 22 Copynumber: 2.2 Consensus size: 24
7482724 TTTTGCATAA
* *
7482734 ATTTGCATGATTTTTATAATATTTT
1 ATTTGCATGACTTTTAT-ATATTAT
7482759 ATTTGCATG-CTTTTAT-TATTAT
1 ATTTGCATGACTTTTATATATTAT
7482781 ATTT
1 ATTT
7482785 TTTGCATGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 9 0.38
24 6 0.25
25 9 0.38
ACGTcount: A:0.25, C:0.06, G:0.08, T:0.61
Consensus pattern (24 bp):
ATTTGCATGACTTTTATATATTAT
Found at i:7482857 original size:21 final size:21
Alignment explanation
Indices: 7482831--7482880 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
7482821 TTGCATGAAT
*
7482831 TTAATTTGCTTGCATGATTTA
1 TTAATTTGCTTGCATGACTTA
**
7482852 TTAATTTATTTGCATGACTTA
1 TTAATTTGCTTGCATGACTTA
7482873 TT-ATTTGC
1 TTAATTTGC
7482881 ATCATTTATT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
20 4 0.17
21 20 0.83
ACGTcount: A:0.24, C:0.10, G:0.12, T:0.54
Consensus pattern (21 bp):
TTAATTTGCTTGCATGACTTA
Found at i:7482878 original size:16 final size:16
Alignment explanation
Indices: 7482857--7482892 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7482847 ATTTATTAAT
*
7482857 TTATTTGCATGACTTA
1 TTATTTGCATCACTTA
*
7482873 TTATTTGCATCATTTA
1 TTATTTGCATCACTTA
7482889 TTAT
1 TTAT
7482893 GATATTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.25, C:0.11, G:0.08, T:0.56
Consensus pattern (16 bp):
TTATTTGCATCACTTA
Found at i:7486267 original size:27 final size:27
Alignment explanation
Indices: 7486237--7486293 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 27
7486227 TATTTAGGTA
* *
7486237 ATATTTTTTA-TAAATATATATTAATAT
1 ATATTTTTCATTAAAAATATATTAAT-T
7486264 ATATTTTTCATTAAAAATATATTAATT
1 ATATTTTTCATTAAAAATATATTAATT
7486291 ATA
1 ATA
7486294 ATTAATGTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 13 0.48
28 14 0.52
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.53
Consensus pattern (27 bp):
ATATTTTTCATTAAAAATATATTAATT
Found at i:7489402 original size:35 final size:35
Alignment explanation
Indices: 7489346--7489414 Score: 81
Period size: 35 Copynumber: 2.0 Consensus size: 35
7489336 TCTCTCTTGA
*
7489346 AAAATGATGAAAAGTGCAAAAATAA-AAATGAAAGAG
1 AAAATGATGAAAAGAGCAAAAA-AAGAAAT-AAAGAG
7489382 AAAAT-ATGAAAAGAAG-AAAAAAAGAAATAAAGA
1 AAAATGATGAAAAG-AGCAAAAAAAGAAATAAAGA
7489415 AAAGAGAAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
34 7 0.23
35 17 0.57
36 6 0.20
ACGTcount: A:0.70, C:0.01, G:0.17, T:0.12
Consensus pattern (35 bp):
AAAATGATGAAAAGAGCAAAAAAAGAAATAAAGAG
Found at i:7489954 original size:14 final size:15
Alignment explanation
Indices: 7489925--7489954 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7489915 TGAAACAAAA
7489925 TTTAGAATTAATTTG
1 TTTAGAATTAATTTG
7489940 TTTAGAATT-ATTTG
1 TTTAGAATTAATTTG
7489954 T
1 T
7489955 ATATTCATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (15 bp):
TTTAGAATTAATTTG
Found at i:7491066 original size:58 final size:55
Alignment explanation
Indices: 7490948--7491157 Score: 198
Period size: 53 Copynumber: 3.8 Consensus size: 55
7490938 AAATATATAT
* * * * * * *
7490948 AATTATTTCACAATTTGGGCCAAATTAGAAA-T-ATTTTCTTT-TTGAAATATCTA
1 AATT-TTTCACCATTTGGGTCAATTTAGAAATTCTTTTTATTTATTTAAATTTCTA
* * *
7491001 AAATTTTCACCATTTGGGTCTATTTAGGAATTCTTTTTATTTATTTATAGGATTTCTA
1 AATTTTTCACCATTTGGGTCAATTTAGAAATTCTTTTTATTTATTTA-A--ATTTCTA
* * *
7491059 AATTTTTCACCATTTGGGTCAATTTAAAAATAT-TTTCT-TTT-TTGAAATTTCTA
1 AATTTTTCACCATTTGGGTCAATTTAGAAAT-TCTTTTTATTTATTTAAATTTCTA
* *
7491112 AATTTTCCACCATTTGGGCCAATTTAGAAATTCTTTTTATTTATTT
1 AATTTTTCACCATTTGGGTCAATTTAGAAATTCTTTTTATTTATTT
7491158 TTTTTTATTT
Statistics
Matches: 126, Mismatches: 21, Indels: 18
0.76 0.13 0.11
Matches are distributed among these distances:
52 22 0.17
53 43 0.34
54 10 0.08
55 6 0.05
56 4 0.03
57 3 0.02
58 37 0.29
59 1 0.01
ACGTcount: A:0.30, C:0.12, G:0.10, T:0.49
Consensus pattern (55 bp):
AATTTTTCACCATTTGGGTCAATTTAGAAATTCTTTTTATTTATTTAAATTTCTA
Found at i:7491076 original size:110 final size:112
Alignment explanation
Indices: 7490948--7491157 Score: 318
Period size: 111 Copynumber: 1.9 Consensus size: 112
7490938 AAATATATAT
*
7490948 AATTATTTCACAATTTGGGCCAAATTAGAAATATTTTC-TTTTTGAAATATCTAAAATTTT-CAC
1 AATTATTTCACAATTTGGGCCAAATTAAAAATATTTTCTTTTTTGAAATATCT-AAATTTTCCAC
* * *
7491011 CATTTGGGTCTATTTAGGAATTCTTTTTATTTATTTATAGGATTTCTA
65 CATTTGGGCCAATTTAGAAATTCTTTTTATTTATTTATAGGATTTCTA
* * * *
7491059 AATT-TTTCACCATTTGGGTCAATTTAAAAATATTTTCTTTTTTGAAATTTCTAAATTTTCCACC
1 AATTATTTCACAATTTGGGCCAAATTAAAAATATTTTCTTTTTTGAAATATCTAAATTTTCCACC
7491123 ATTTGGGCCAATTTAGAAATTCTTTTTATTTATTT
66 ATTTGGGCCAATTTAGAAATTCTTTTTATTTATTT
7491158 TTTTTTATTT
Statistics
Matches: 89, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
110 36 0.40
111 53 0.60
ACGTcount: A:0.30, C:0.12, G:0.10, T:0.49
Consensus pattern (112 bp):
AATTATTTCACAATTTGGGCCAAATTAAAAATATTTTCTTTTTTGAAATATCTAAATTTTCCACC
ATTTGGGCCAATTTAGAAATTCTTTTTATTTATTTATAGGATTTCTA
Found at i:7491127 original size:53 final size:52
Alignment explanation
Indices: 7490953--7491142 Score: 195
Period size: 58 Copynumber: 3.5 Consensus size: 52
7490943 TATATAATTA
* * *
7490953 TTTCACAATTTGGGCCAAATTAGAAATATTTTC-TTTTTGAAATATCTAAAAT
1 TTTCACCATTTGGGCCAATTTAGAAATATTTTCTTTTTTGAAATTTCT-AAAT
* * * * *
7491005 TTTCACCATTTGGGTCTATTTAGGAAT-TCTTTTTATTTATTTATAGGATTTCTAAATT
1 TTTCACCATTTGGGCCAATTTAGAAATAT-TTTCT-TTT-TTGA-A--ATTTCTAAA-T
* *
7491063 TTTCACCATTTGGGTCAATTTAAAAATATTTTCTTTTTTGAAATTTCTAAAT
1 TTTCACCATTTGGGCCAATTTAGAAATATTTTCTTTTTTGAAATTTCTAAAT
7491115 TTTCCACCATTTGGGCCAATTTAGAAAT
1 TTT-CACCATTTGGGCCAATTTAGAAAT
7491143 TCTTTTTATT
Statistics
Matches: 113, Mismatches: 15, Indels: 19
0.77 0.10 0.13
Matches are distributed among these distances:
51 1 0.01
52 29 0.26
53 31 0.27
54 3 0.03
55 4 0.04
56 4 0.04
57 6 0.05
58 34 0.30
59 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.11, T:0.47
Consensus pattern (52 bp):
TTTCACCATTTGGGCCAATTTAGAAATATTTTCTTTTTTGAAATTTCTAAAT
Found at i:7491164 original size:14 final size:14
Alignment explanation
Indices: 7491145--7491178 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
7491135 TTAGAAATTC
7491145 TTTTTATTTATTTT
1 TTTTTATTTATTTT
7491159 TTTTTATTTATTTT
1 TTTTTATTTATTTT
7491173 TGTTTT
1 T-TTTT
7491179 TAGAAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 15 0.79
15 4 0.21
ACGTcount: A:0.12, C:0.00, G:0.03, T:0.85
Consensus pattern (14 bp):
TTTTTATTTATTTT
Found at i:7492914 original size:41 final size:41
Alignment explanation
Indices: 7492857--7492997 Score: 147
Period size: 41 Copynumber: 3.4 Consensus size: 41
7492847 AAACTTAATG
* *
7492857 ACTTTGAAAAATAAAAGGCTCTTTTAAATAAAGGCTCAACA
1 ACTTTGAAAAATAAAAGGCTCATCTAAATAAAGGCTCAACA
* * **
7492898 ACTTTGAAAAATAAAAGGCTCCTCTAAATAAAGGCTTAATG
1 ACTTTGAAAAATAAAAGGCTCATCTAAATAAAGGCTCAACA
*** * ** * *
7492939 ACTCAAAAAAATAAAATGCTCATCTAAGCAGAGGCACAACA
1 ACTTTGAAAAATAAAAGGCTCATCTAAATAAAGGCTCAACA
*
7492980 ACTTTTAAAAATAAAAGG
1 ACTTTGAAAAATAAAAGG
7492998 AAAATAAAAA
Statistics
Matches: 79, Mismatches: 21, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
41 79 1.00
ACGTcount: A:0.48, C:0.16, G:0.13, T:0.23
Consensus pattern (41 bp):
ACTTTGAAAAATAAAAGGCTCATCTAAATAAAGGCTCAACA
Found at i:7493261 original size:23 final size:22
Alignment explanation
Indices: 7493235--7493280 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
7493225 TTTCATAAGA
*
7493235 ATTCAAATTTGTAAGATTTCAAG
1 ATTCAAATTTGTAA-ATTGCAAG
*
7493258 ATTCATATTTGTAAATTGCAAG
1 ATTCAAATTTGTAAATTGCAAG
7493280 A
1 A
7493281 CTTGCATCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (22 bp):
ATTCAAATTTGTAAATTGCAAG
Found at i:7493372 original size:20 final size:20
Alignment explanation
Indices: 7493334--7493372 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7493324 TCACATCCAA
* *
7493334 AAGTTTAAAGCTTCTCATTC
1 AAGTTCAAAGCTTCACATTC
*
7493354 AAGTTCAAAGGTTCACATT
1 AAGTTCAAAGCTTCACATT
7493373 TAATAAATTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (20 bp):
AAGTTCAAAGCTTCACATTC
Found at i:7493444 original size:108 final size:110
Alignment explanation
Indices: 7493312--7493509 Score: 328
Period size: 108 Copynumber: 1.8 Consensus size: 110
7493302 TTCTCATTTG
* * *
7493312 AATTTTGGAGATTCACATCCAAAAGTTTAAAGCTTCTCATTCAAGTTCAAAGGTTCACATTTAAT
1 AATTTTGGAGATTCACATCAAAAAGTTCAAAGCTTCTCATTCAAGTTCAAAGGATCACATTTAAT
*
7493377 AAAT-TTGAAG-TTCACATCCAAAAAGTTTAAGCTTTTTTGTTCA
66 AAATCTTAAAGTTTCACATCCAAAAAGTTTAAGCTTTTTTGTTCA
*
7493420 AATTTTGGAGATTCACATCAAAAAGTTCAAAGCTTCTCATTCTAGTTCAAAGGATCACATTTAAT
1 AATTTTGGAGATTCACATCAAAAAGTTCAAAGCTTCTCATTCAAGTTCAAAGGATCACATTTAAT
*
7493485 AAATCTTAAAGTTTCACATCTAAAA
66 AAATCTTAAAGTTTCACATCCAAAA
7493510 TCTCAAAGGT
Statistics
Matches: 82, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
108 65 0.79
109 5 0.06
110 12 0.15
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.35
Consensus pattern (110 bp):
AATTTTGGAGATTCACATCAAAAAGTTCAAAGCTTCTCATTCAAGTTCAAAGGATCACATTTAAT
AAATCTTAAAGTTTCACATCCAAAAAGTTTAAGCTTTTTTGTTCA
Found at i:7493566 original size:23 final size:23
Alignment explanation
Indices: 7493485--7493572 Score: 90
Period size: 25 Copynumber: 3.8 Consensus size: 23
7493475 CACATTTAAT
* * *
7493485 AAATCTTAAAGTTTCACATCT-A
1 AAATCTTAAAGATTCTCATTTGA
* *
7493507 AAATCTCAAAGGTTCTCATTTGA
1 AAATCTTAAAGATTCTCATTTGA
7493530 AAATGTCTTAAAGATTCTCATTTGA
1 AAA--TCTTAAAGATTCTCATTTGA
7493555 ATAA-CTTAAAGATTCTCA
1 A-AATCTTAAAGATTCTCA
7493573 AAGATTTTCA
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
22 17 0.30
23 18 0.32
25 19 0.34
26 2 0.04
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (23 bp):
AAATCTTAAAGATTCTCATTTGA
Found at i:7493576 original size:33 final size:33
Alignment explanation
Indices: 7493539--7493617 Score: 124
Period size: 33 Copynumber: 2.4 Consensus size: 33
7493529 AAAATGTCTT
* *
7493539 AAAGATTCTCATTTGAATAACTTAAAGATTCTC
1 AAAGATTCTCATTTGAAAAACTCAAAGATTCTC
*
7493572 AAAGATTTTCATTTGAAAAACTCAAAGATTCTC
1 AAAGATTCTCATTTGAAAAACTCAAAGATTCTC
7493605 AAAGATTCT-ATTT
1 AAAGATTCTCATTT
7493618 AAGATTCAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 4 0.10
33 38 0.90
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.37
Consensus pattern (33 bp):
AAAGATTCTCATTTGAAAAACTCAAAGATTCTC
Found at i:7493679 original size:21 final size:21
Alignment explanation
Indices: 7493602--7493729 Score: 89
Period size: 21 Copynumber: 5.8 Consensus size: 21
7493592 CTCAAAGATT
7493602 CTCAAAGATTCT-ATTTAAGA
1 CTCAAAGATTCTCATTTAAGA
* * *
7493622 TTCAAAGGTTCTCATTTTAAAATGT
1 CTCAAAGATTCTCA-TTT--AA-GA
*
7493647 CTTAAAG-TTCTCATTTAAGA
1 CTCAAAGATTCTCATTTAAGA
* *
7493667 CTCAAAGGTTCTCATTTGAAAATGT
1 CTCAAAGATTCTCATTT---AA-GA
* * *
7493692 CTTAAAGATTCTTATTTACGA
1 CTCAAAGATTCTCATTTAAGA
7493713 CTCAAAGATTCTCATTT
1 CTCAAAGATTCTCATTT
7493730 GAGGATTCAT
Statistics
Matches: 83, Mismatches: 15, Indels: 19
0.71 0.13 0.16
Matches are distributed among these distances:
20 17 0.20
21 28 0.34
22 4 0.05
23 3 0.04
24 10 0.12
25 21 0.25
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.40
Consensus pattern (21 bp):
CTCAAAGATTCTCATTTAAGA
Found at i:7493708 original size:25 final size:24
Alignment explanation
Indices: 7493625--7493709 Score: 88
Period size: 25 Copynumber: 3.6 Consensus size: 24
7493615 TTTAAGATTC
7493625 AAAGGTTCTCATTTTAAAATGTCTT
1 AAAGGTTCTCA-TTTAAAATGTCTT
* *
7493650 AAA-GTTCTCATTT--AA-GACTC
1 AAAGGTTCTCATTTAAAATGTCTT
7493670 AAAGGTTCTCATTTGAAAATGTCTT
1 AAAGGTTCTCATTT-AAAATGTCTT
* *
7493695 AAAGATTCTTATTTA
1 AAAGGTTCTCATTTA
7493710 CGACTCAAAG
Statistics
Matches: 49, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
20 6 0.12
21 12 0.24
23 3 0.06
24 10 0.20
25 18 0.37
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.41
Consensus pattern (24 bp):
AAAGGTTCTCATTTAAAATGTCTT
Found at i:7493726 original size:46 final size:46
Alignment explanation
Indices: 7493605--7493731 Score: 195
Period size: 45 Copynumber: 2.8 Consensus size: 46
7493595 AAAGATTCTC
* *
7493605 AAAGATTC-TATTTAAGATTCAAAGGTTCTCATTTTAAAATGTCTT
1 AAAGATTCTTATTTAAGACTCAAAGGTTCTCATTTGAAAATGTCTT
*
7493650 AAAG-TTCTCATTTAAGACTCAAAGGTTCTCATTTGAAAATGTCTT
1 AAAGATTCTTATTTAAGACTCAAAGGTTCTCATTTGAAAATGTCTT
* *
7493695 AAAGATTCTTATTTACGACTCAAAGATTCTCATTTGA
1 AAAGATTCTTATTTAAGACTCAAAGGTTCTCATTTGA
7493732 GGATTCATGA
Statistics
Matches: 74, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
44 3 0.04
45 42 0.57
46 29 0.39
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (46 bp):
AAAGATTCTTATTTAAGACTCAAAGGTTCTCATTTGAAAATGTCTT
Found at i:7494245 original size:63 final size:63
Alignment explanation
Indices: 7494090--7494351 Score: 274
Period size: 63 Copynumber: 4.1 Consensus size: 63
7494080 TATCAAAATG
* * * * *
7494090 AATTCTATCTTCTATCACTTGGTCACCATTCATAGGCTTCTCAGCACTAGCCATTTCATTTCAGA
1 AATTTTATCCTCTATCACTTGGTCACCACTCATAGGTTTCTCAGCACTA---A--CCATTTCAGA
**
7494155 ATG
61 ACA
* * * * * *
7494158 GATTTTGTCCTCTATTATTTGGTCACCGCTCATAGGTTTCTCAGCACTAACCATTTTAGAACA
1 AATTTTATCCTCTATCACTTGGTCACCACTCATAGGTTTCTCAGCACTAACCATTTCAGAACA
* * * * *
7494221 AATTTTATCCTCTATCACTTGGTCATCGCTTAAAGGTTTCTCAGTACTAACCATTTCAGAA-A
1 AATTTTATCCTCTATCACTTGGTCACCACTCATAGGTTTCTCAGCACTAACCATTTCAGAACA
* * *
7494283 AAGTTTTATCTTCCATCACTTGGTCATCACTCATAGGTTTCTCAGCACTAACCATTTCAGAACA
1 AA-TTTTATCCTCTATCACTTGGTCACCACTCATAGGTTTCTCAGCACTAACCATTTCAGAACA
7494347 AATTT
1 AATTT
7494352 CACCCACTGA
Statistics
Matches: 164, Mismatches: 28, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
62 3 0.02
63 117 0.71
64 3 0.02
65 1 0.01
68 40 0.24
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.37
Consensus pattern (63 bp):
AATTTTATCCTCTATCACTTGGTCACCACTCATAGGTTTCTCAGCACTAACCATTTCAGAACA
Found at i:7495119 original size:9 final size:10
Alignment explanation
Indices: 7495092--7495116 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7495082 ATTCTTTCAT
7495092 TTTTTTCTTA
1 TTTTTTCTTA
7495102 TTTTTTCTTA
1 TTTTTTCTTA
7495112 TTTTT
1 TTTTT
7495117 CTTTTTCTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTTTTCTTA
Found at i:7495147 original size:15 final size:15
Alignment explanation
Indices: 7495102--7495155 Score: 56
Period size: 16 Copynumber: 3.5 Consensus size: 15
7495092 TTTTTTCTTA
*
7495102 TTTTTTCTTATTTTTC
1 TTTTTTCTT-TCTTTC
*
7495118 -TTTTTCTCTCTTTTC
1 TTTTTTCTTTC-TTTC
7495133 TTTTTTCTTTCTTTC
1 TTTTTTCTTTCTTTC
7495148 ATTTTTTC
1 -TTTTTTC
7495156 ACCCATTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
14 1 0.03
15 15 0.47
16 16 0.50
ACGTcount: A:0.04, C:0.19, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTTTCTTTCTTTC
Found at i:7500828 original size:14 final size:14
Alignment explanation
Indices: 7500809--7500835 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7500799 TAAAATAATA
7500809 AAAAATTATCATGT
1 AAAAATTATCATGT
7500823 AAAAATTATCATG
1 AAAAATTATCATG
7500836 CAAACAACCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAAATTATCATGT
Found at i:7500954 original size:25 final size:25
Alignment explanation
Indices: 7500933--7500996 Score: 92
Period size: 25 Copynumber: 2.5 Consensus size: 25
7500923 AACAAAAAAC
7500933 AGAAAATAAGAAAAAATGAAAATAAA
1 AGAAAA-AAGAAAAAATGAAAATAAA
* *
7500959 ATAAAAAATAAAAAATGAAAATAAGA
1 AGAAAAAAGAAAAAATGAAAATAA-A
7500985 AGAAAAAAGAAA
1 AGAAAAAAGAAA
7500997 GCCAAAACTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 17 0.52
26 16 0.48
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (25 bp):
AGAAAAAAGAAAAAATGAAAATAAA
Found at i:7502090 original size:24 final size:25
Alignment explanation
Indices: 7502032--7502091 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 25
7502022 AACTAAAATT
*
7502032 AAAAACCAAAATCCAAATTAAGACA
1 AAAAATCAAAATCCAAATTAAGACA
7502057 AAAAAT-AAAA-CCAAAATTAAGAC-
1 AAAAATCAAAATCC-AAATTAAGACA
*
7502080 TAAAATCAAAAT
1 AAAAATCAAAAT
7502092 TAAAAATTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
23 7 0.23
24 18 0.60
25 5 0.17
ACGTcount: A:0.67, C:0.15, G:0.03, T:0.15
Consensus pattern (25 bp):
AAAAATCAAAATCCAAATTAAGACA
Found at i:7502882 original size:84 final size:84
Alignment explanation
Indices: 7502756--7502998 Score: 229
Period size: 84 Copynumber: 2.9 Consensus size: 84
7502746 ACGTATTCAT
* * * *
7502756 CTTGAAAGACTTATGAATCTTGCTTAGAGGACTTAGAGATTATGCCTAGAGGCCTTACAAATGTT
1 CTTGAAAGACTTATGAATCTTGCTTAGAGAACTTAGAGATTATACCCAGAGGCCTTACAAAT-TA
* *
7502821 GA-TTCTAAAATAGATTTAG
65 AACTTCGAAAATAGATTTAG
* * * * *
7502840 CTTGGAAGACTTATGAATCTTGCTTGGAGAACTTGGTA-ATTATACCCATAGGCTTTACAAATTA
1 CTTGAAAGACTTATGAATCTTGCTTAGAGAACTTAG-AGATTATACCCAGAGGCCTTACAAATTA
*
7502904 AACTTGGAAAATAGATTTAG
65 AACTTCGAAAATAGATTTAG
* * * * * * * * * * * * *
7502924 CTCGTAATACTTATGAATCTTGCCTAAAGGAGTTAGTGATTATGCTCAAAGGTCTTAAAAATTAA
1 CTTGAAAGACTTATGAATCTTGCTTAGAGAACTTAGAGATTATACCCAGAGGCCTTACAAATTAA
7502989 ACTTCGAAAA
66 ACTTCGAAAA
7502999 AGCTTTTTTT
Statistics
Matches: 127, Mismatches: 29, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
83 2 0.02
84 124 0.98
85 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.33
Consensus pattern (84 bp):
CTTGAAAGACTTATGAATCTTGCTTAGAGAACTTAGAGATTATACCCAGAGGCCTTACAAATTAA
ACTTCGAAAATAGATTTAG
Found at i:7503076 original size:22 final size:22
Alignment explanation
Indices: 7503051--7503106 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
7503041 TGGATATCTG
*
7503051 GAGGTTTTAAAGATCATGCCCA
1 GAGGTTTTAAAGATCATGCCAA
* * * *
7503073 GAGGTCTTATAGATCTTGTCAA
1 GAGGTTTTAAAGATCATGCCAA
7503095 GAGGATTTTAAA
1 GAGG-TTTTAAA
7503107 AAGAATTTGA
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
22 21 0.81
23 5 0.19
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.32
Consensus pattern (22 bp):
GAGGTTTTAAAGATCATGCCAA
Found at i:7507812 original size:35 final size:36
Alignment explanation
Indices: 7507736--7507823 Score: 97
Period size: 36 Copynumber: 2.5 Consensus size: 36
7507726 AAAACAATTG
* * * * *
7507736 GGACAACATCACAAATCAAAAAATAAGTAATGACTA
1 GGACAACACCACAAGTTAAAAAATAAGTAACGACCA
* *
7507772 TGACAACACCACAAGTTAAAAAATATG-AACGACCA
1 GGACAACACCACAAGTTAAAAAATAAGTAACGACCA
*
7507807 GGACAACACCATAAGTT
1 GGACAACACCACAAGTT
7507824 GGAACATAAG
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
35 21 0.49
36 22 0.51
ACGTcount: A:0.51, C:0.20, G:0.12, T:0.16
Consensus pattern (36 bp):
GGACAACACCACAAGTTAAAAAATAAGTAACGACCA
Found at i:7507985 original size:18 final size:18
Alignment explanation
Indices: 7507962--7507996 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7507952 TGGGACAACG
7507962 CTAACGGTTGAGAAAACC
1 CTAACGGTTGAGAAAACC
*
7507980 CTAACGGTTGGGAAAAC
1 CTAACGGTTGAGAAAAC
7507997 AAATATGATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.20, G:0.26, T:0.17
Consensus pattern (18 bp):
CTAACGGTTGAGAAAACC
Found at i:7508188 original size:36 final size:36
Alignment explanation
Indices: 7508012--7508188 Score: 137
Period size: 35 Copynumber: 5.0 Consensus size: 36
7508002 TGATCGGGAC
* * * * *
7508012 AATACCAATAATTAAGAAGAAAAAGATGATCAGGAC
1 AATACCAATAGTTAAAAAGATAAAGATGATCAAGAT
* * * * * *
7508048 AACATCAACAGTCAAAAAGATAAATATGA-CTGAGAT
1 AATACCAATAGTTAAAAAGATAAAGATGATC-AAGAT
* *** *
7508084 AACACCAATAGTTTGGAAG-TAAAAATGATCAAGAT
1 AATACCAATAGTTAAAAAGATAAAGATGATCAAGAT
* *
7508119 AATACCAATCA-TTAGAAAG-TAAAGATGACCAAGAT
1 AATACCAAT-AGTTAAAAAGATAAAGATGATCAAGAT
*
7508154 AATACCAATAGTAAAAAAGATAAAGATGATCAAGA
1 AATACCAATAGTTAAAAAGATAAAGATGATCAAGA
7508189 CCTCTTTACA
Statistics
Matches: 109, Mismatches: 27, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
34 1 0.01
35 56 0.51
36 52 0.48
ACGTcount: A:0.54, C:0.12, G:0.15, T:0.19
Consensus pattern (36 bp):
AATACCAATAGTTAAAAAGATAAAGATGATCAAGAT
Found at i:7508307 original size:107 final size:107
Alignment explanation
Indices: 7508211--7508406 Score: 245
Period size: 107 Copynumber: 1.8 Consensus size: 107
7508201 AGTCAAGAAA
*
7508211 AAAAATGATCGAGACAATACCAATGATCAAGAA-ATAAAGATGA-CTAAGACAACACCAATGGTT
1 AAAAATGATCGAGACAACACCAATGATCAAGAAGATAAAGATGACCT-AGACAACACCAATGGTT
* * *
7508274 AGG-AAGTAAAGATCACTGGGACAACATTGACAATTGAGAATAT
65 -GGAAAGTAAAAATCACTAGGACAACATTGACAATTAAGAATAT
* * * * * **
7508317 AAAGATGATCGAGATAACACCAATGGTCGAGAAGATAAAGATGACCTAGGCAACGTCAATGGTTG
1 AAAAATGATCGAGACAACACCAATGATCAAGAAGATAAAGATGACCTAGACAACACCAATGGTTG
*
7508382 GAAAGTAAAAATGACTAGGACAACA
66 GAAAGTAAAAATCACTAGGACAACA
7508407 CTAGTGGTAA
Statistics
Matches: 76, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
106 30 0.39
107 44 0.58
108 2 0.03
ACGTcount: A:0.46, C:0.14, G:0.21, T:0.18
Consensus pattern (107 bp):
AAAAATGATCGAGACAACACCAATGATCAAGAAGATAAAGATGACCTAGACAACACCAATGGTTG
GAAAGTAAAAATCACTAGGACAACATTGACAATTAAGAATAT
Found at i:7508456 original size:71 final size:70
Alignment explanation
Indices: 7508381--7508668 Score: 231
Period size: 71 Copynumber: 4.0 Consensus size: 70
7508371 GTCAATGGTT
* * * * *
7508381 GGAAAGTAAAAATGACTAGGACAACACTAGTGGTAAAAAAGATAAAGATGATTGGGACAATACCA
1 GGAAAGTAAAAATGACTAGGACAACACCAATGGTCAAAAAG-TAAAGATGATTGAGACAACACCA
*
7508446 ATAGTA
65 ACAGTA
* * * * *
7508452 GGAAAG-ATAAAATGACT-GGTATAACACCAACGGTCAAAAAGTAAAAGATGTTTGGGACATCAC
1 GGAAAGTA-AAAATGACTAGG-ACAACACCAATGGTCAAAAAGT-AAAGATGATTGAGACAACAC
*
7508515 CAACAGTT
63 CAACAGTA
* * * * * *
7508523 GGGAAGTAAAAGATGA-TCAAGACAACACAAATGGTTAAGAAGTAAAGATGACTGAGACAACACC
1 GGAAAGTAAAA-ATGACT-AGGACAACACCAATGGTCAAAAAGTAAAGATGATTGAGACAACACC
*
7508587 AACAGTT
64 AACAGTA
* * * * * * * *
7508594 GAAAAATAAAAGTGATTAGGATAACACCAATGGTCAAAAAGATAAAAATGATCGAGATAACACCA
1 GGAAAGTAAAAATGACTAGGACAACACCAATGGTCAAAAAG-TAAAGATGATTGAGACAACACCA
*
7508659 ATAGTCA
65 ACAGT-A
7508666 GGA
1 GGA
7508669 TGTAAAAGTT
Statistics
Matches: 170, Mismatches: 37, Indels: 19
0.75 0.16 0.08
Matches are distributed among these distances:
70 26 0.15
71 119 0.70
72 24 0.14
73 1 0.01
ACGTcount: A:0.48, C:0.13, G:0.21, T:0.18
Consensus pattern (70 bp):
GGAAAGTAAAAATGACTAGGACAACACCAATGGTCAAAAAGTAAAGATGATTGAGACAACACCAA
CAGTA
Found at i:7508565 original size:36 final size:36
Alignment explanation
Indices: 7508525--7508988 Score: 184
Period size: 36 Copynumber: 13.0 Consensus size: 36
7508515 CAACAGTTGG
* *
7508525 GAAGTAAAAGATGATCAAGACAACACAAATGGTTAA
1 GAAGTAAAAGATGATCAAGACAACACCAATGGTCAA
* * * *
7508561 GAAGT-AAAGATGA-CTGAGACAACACCAACAGTTGAA
1 GAAGTAAAAGATGATC-AAGACAACACCAA-TGGTCAA
* * * *
7508597 -AAATAAAAG-TGATTAGGATAACACCAATGGTCAA
1 GAAGTAAAAGATGATCAAGACAACACCAATGGTCAA
* * * * *
7508631 AAAGATAAAA-ATGATCGAGATAACACCAATAGTCAG
1 GAAG-TAAAAGATGATCAAGACAACACCAATGGTCAA
* * * * *
7508667 GATGTAAAAGTTGATCGAA-ACATCACTAATGGTAAA
1 GAAGTAAAAGATGATC-AAGACAACACCAATGGTCAA
* * * * * * ** **
7508703 AAACTAGAAG-TGATCAGGATAATACCAACAGTCGT
1 GAAGTAAAAGATGATCAAGACAACACCAATGGTCAA
*
7508738 GAAGAAAAAGATGATC-AGAACAACACCAATGGTCAA
1 GAAGTAAAAGATGATCAAG-ACAACACCAATGGTCAA
* * * * *
7508774 GAGGT-AAAGATGACCGAGACAACATCACACGGTCAA
1 GAAGTAAAAGATGATCAAGACAACACCA-ATGGTCAA
* * **
7508810 GAAG-ATAAAGATGATTAAGACAACACCAACGGTTGA
1 GAAGTA-AAAGATGATCAAGACAACACCAATGGTCAA
* * ** * *
7508846 GAA-AATAAAGATGAT-AGGGATGACACCAATGATAAA
1 GAAGTA-AAAGATGATCA-AGACAACACCAATGGTCAA
* * * * *
7508882 AAAG-ATAAAGATGATCGAGATAATACCAATAGTCAA
1 GAAGTA-AAAGATGATCAAGACAACACCAATGGTCAA
*** * *
7508918 GAAGTAAAAGATGATTGGGACAACATCAATGGTTAA
1 GAAGTAAAAGATGATCAAGACAACACCAATGGTCAA
* * * *
7508954 GAAATAAAAG-TGA-CTAGGATAATACCAATGGTCAA
1 GAAGTAAAAGATGATC-AAGACAACACCAATGGTCAA
7508989 AAAAATAAAG
Statistics
Matches: 310, Mismatches: 96, Indels: 45
0.69 0.21 0.10
Matches are distributed among these distances:
34 6 0.02
35 98 0.32
36 186 0.60
37 20 0.06
ACGTcount: A:0.48, C:0.13, G:0.20, T:0.18
Consensus pattern (36 bp):
GAAGTAAAAGATGATCAAGACAACACCAATGGTCAA
Found at i:7508640 original size:107 final size:106
Alignment explanation
Indices: 7508529--7508797 Score: 249
Period size: 107 Copynumber: 2.5 Consensus size: 106
7508519 AGTTGGGAAG
* * *
7508529 TAAAAGATGATCAAGACAACACAAATGGTTAAGAAGTAAAGATGACTGAGACAACACCAACAGTT
1 TAAAAGATGATC-AGACAACACCAATGGTCAAGAAGTAAAGATGACTGAGACAACACCAA-AGGT
* * **
7508594 GAAAAA-TAAAAGTGATTAGGATAACACCAATGGTCAAAAAGA
64 AAAAAACTAAAAGTGATCAGGATAACACCAACAGTCAAAAAGA
* * * * * * * * *
7508636 TAAAA-ATGATCGAGATAACACCAATAGTCAGGATGTAAAAGTTGA-TCGAAACATCACTAATGG
1 TAAAAGATGATC-AGACAACACCAATGGTCAAGAAGT-AAAGATGACT-GAGACAACACCAAAGG
* * ***
7508699 TAAAAAACTAGAAGTGATCAGGATAATACCAACAGTCGTGAAGA
63 TAAAAAACTAAAAGTGATCAGGATAACACCAACAGTCAAAAAGA
* *
7508743 -AAAAGATGATCAGAACAACACCAATGGTCAAGAGGTAAAGATGACCGAGACAACA
1 TAAAAGATGATCAG-ACAACACCAATGGTCAAGAAGTAAAGATGACTGAGACAACA
7508798 TCACACGGTC
Statistics
Matches: 126, Mismatches: 30, Indels: 13
0.75 0.18 0.08
Matches are distributed among these distances:
106 52 0.41
107 74 0.59
ACGTcount: A:0.49, C:0.14, G:0.20, T:0.17
Consensus pattern (106 bp):
TAAAAGATGATCAGACAACACCAATGGTCAAGAAGTAAAGATGACTGAGACAACACCAAAGGTAA
AAAACTAAAAGTGATCAGGATAACACCAACAGTCAAAAAGA
Found at i:7508658 original size:142 final size:140
Alignment explanation
Indices: 7508211--7508699 Score: 373
Period size: 142 Copynumber: 3.5 Consensus size: 140
7508201 AGTCAAGAAA
* *** * *
7508211 AAAAATGATCGAGACAATACCAAT-GATCAAGAAAT-AAAGATGACTAAGACAACACCAATGGTT
1 AAAAATGATCGAGACAACACCAATAG-TTGGGAAGTAAAAGATGACTAAGACAACACTAATGGTT
* * *** * *
7508274 AGGAAGTAAAGATCACTGGGACAACATTGACAATTG-AGAATATAAAGATGATCGAGATAACACC
65 AAGAAGTAAAGATGACTGGGACAACACCAACAGTTGAAAAATA-AAAG-TGAT-G-GATAACACC
* *
7508338 AATGGTCGAGAAGAT
126 AATGGTCAAAAAGAT
* * * * ** * * * * *
7508353 AAAGATGACCTAGGCAACGTCAATGGTTGGAAAGTAAAA-ATGACTAGGACAACACTAGTGGTAA
1 AAAAATGATCGAGACAACACCAATAGTTGGGAAGTAAAAGATGACTAAGACAACACTAATGGTTA
* * * * * *
7508417 AAAAGATAAAGATGATTGGGACAATACCAATAGTAGGAAAGATAAAA-TGACTGGTATAACACCA
66 AGAAG-TAAAGATGACTGGGACAACACCAACAGT-TGAAAAATAAAAGTGA-TGG-ATAACACCA
*
7508481 ACGGTCAAAAAG-T
127 ATGGTCAAAAAGAT
* * * * * *
7508494 AAAAGATGTTTGGGACATCACCAACAGTTGGGAAGTAAAAGATGA-TCAAGACAACACAAATGGT
1 AAAA-ATGATCGAGACAACACCAATAGTTGGGAAGTAAAAGATGACT-AAGACAACACTAATGGT
*
7508558 TAAGAAGTAAAGATGACTGAGACAACACCAACAGTTGAAAAATAAAAGTGATTAGGATAACACCA
64 TAAGAAGTAAAGATGACTGGGACAACACCAACAGTTGAAAAATAAAAGTGA-T-GGATAACACCA
7508623 ATGGTCAAAAAGAT
127 ATGGTCAAAAAGAT
* ** * * * *
7508637 AAAAATGATCGAGATAACACCAATAGTCAGGATGTAAAAGTTGATCGAA-ACATCACTAATGGT
1 AAAAATGATCGAGACAACACCAATAGTTGGGAAGTAAAAGATGA-CTAAGACAACACTAATGGT
7508700 AAAAAACTAG
Statistics
Matches: 261, Mismatches: 71, Indels: 30
0.72 0.20 0.08
Matches are distributed among these distances:
141 15 0.06
142 181 0.69
143 57 0.22
144 4 0.02
145 4 0.02
ACGTcount: A:0.47, C:0.13, G:0.21, T:0.19
Consensus pattern (140 bp):
AAAAATGATCGAGACAACACCAATAGTTGGGAAGTAAAAGATGACTAAGACAACACTAATGGTTA
AGAAGTAAAGATGACTGGGACAACACCAACAGTTGAAAAATAAAAGTGATGGATAACACCAATGG
TCAAAAAGAT
Found at i:7508872 original size:108 final size:106
Alignment explanation
Indices: 7508759--7509007 Score: 243
Period size: 108 Copynumber: 2.3 Consensus size: 106
7508749 TGATCAGAAC
* * * *
7508759 AACACCAATGGTCAAGAGGTAAAGATGACCGAGACAACATCACACGGTCAAGAAG-ATAAAGATG
1 AACACCAATGGTCAAAAGATAAAGATGACCGAGACAACACCA-ACAGTCAAGAAGTA-AAAGATG
*
7508823 ATTAAGACAACACCAACGGTTGAGAAA-ATAAAGATGA-TAGGGAT
64 ATTAAGACAACACCAACGGTTAAGAAATA-AAAG-TGACTA-GGAT
* * * * * * *
7508867 GACACCAATGATAAAAAAGATAAAGATGATCGAGATAATACCAATAGTCAAGAAGTAAAAGATGA
1 AACACCAATGGT-CAAAAGATAAAGATGACCGAGACAACACCAACAGTCAAGAAGTAAAAGATGA
** * *
7508932 TTGGGACAACATCAATGGTTAAGAAATAAAAGTGACTAGGAT
65 TTAAGACAACACCAACGGTTAAGAAATAAAAGTGACTAGGAT
* * *
7508974 AATACCAATGGTCAAAAAAATAAAGATGATCGAG
1 AACACCAATGGTC-AAAAGATAAAGATGACCGAG
7509008 GAAGATAAAG
Statistics
Matches: 115, Mismatches: 21, Indels: 11
0.78 0.14 0.07
Matches are distributed among these distances:
107 35 0.30
108 55 0.48
109 25 0.22
ACGTcount: A:0.49, C:0.13, G:0.21, T:0.17
Consensus pattern (106 bp):
AACACCAATGGTCAAAAGATAAAGATGACCGAGACAACACCAACAGTCAAGAAGTAAAAGATGAT
TAAGACAACACCAACGGTTAAGAAATAAAAGTGACTAGGAT
Found at i:7509149 original size:36 final size:35
Alignment explanation
Indices: 7509109--7509185 Score: 82
Period size: 36 Copynumber: 2.2 Consensus size: 35
7509099 TTGAGATAAT
* *
7509109 ACCAATAGTGAAGAAGTAAAAGATGACCAGAACAAC
1 ACCAATAGTCAAGAAATAAAAG-TGACCAGAACAAC
* * ** *
7509145 ACCAATGGTCAAGAAATAGAAGTGACTGGGACAAC
1 ACCAATAGTCAAGAAATAAAAGTGACCAGAACAAC
7509180 ACCAAT
1 ACCAAT
7509186 GATCGAAAAG
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
35 16 0.47
36 18 0.53
ACGTcount: A:0.48, C:0.18, G:0.21, T:0.13
Consensus pattern (35 bp):
ACCAATAGTCAAGAAATAAAAGTGACCAGAACAAC
Found at i:7511132 original size:149 final size:139
Alignment explanation
Indices: 7510999--7511270 Score: 336
Period size: 138 Copynumber: 1.9 Consensus size: 139
7510989 AACTTTAGCA
* *
7510999 TTCTTTTTTCATGAATTCTTTCTC-TTTTTTTACTTGGAATTCTAACTGAAGCCTTATTCACTTT
1 TTCTTTTTTCATGAATTATTTCTCTTTTTTTTACTT--AA----AACTAAAGCCTTATTCACTTT
* * * *
7511063 TTGCTTTGGACTC-CTATCTCTGAGGTGCATGTCTTT-TCTTTTTTGTTC-TTCCTTTTTTTGAA
60 TTCCTTCGAACTCTC-ATCTCTGAGGTCCATGTCTTTCT-TTTTTTGTTCTTTCCTTTTTTTGAA
7511125 AACATTTGACTTCAACT
123 AACATTTGACTTCAACT
* *
7511142 TTCTTTTTTCTTGAATTATTTCTCTTTTTTTTACTTAAGACTAAAGCCTTATTCACTTTTTCCTT
1 TTCTTTTTTCATGAATTATTTCTCTTTTTTTTACTTAAAACTAAAGCCTTATTCACTTTTTCCTT
* * *
7511207 CGAACTCTCATCTTTGAGGTCCATGTCTTTCTTTTTTTGTTCTTTTTCTTTTTCTGAAAACATT
66 CGAACTCTCATCTCTGAGGTCCATGTCTTTCTTTTTTTGTTC-TTTCCTTTTTTTGAAAACATT
7511271 CATTCTTGAA
Statistics
Matches: 113, Mismatches: 11, Indels: 13
0.82 0.08 0.09
Matches are distributed among these distances:
138 58 0.51
139 2 0.02
140 18 0.16
142 2 0.02
143 22 0.19
144 11 0.10
ACGTcount: A:0.17, C:0.19, G:0.10, T:0.54
Consensus pattern (139 bp):
TTCTTTTTTCATGAATTATTTCTCTTTTTTTTACTTAAAACTAAAGCCTTATTCACTTTTTCCTT
CGAACTCTCATCTCTGAGGTCCATGTCTTTCTTTTTTTGTTCTTTCCTTTTTTTGAAAACATTTG
ACTTCAACT
Found at i:7511625 original size:149 final size:151
Alignment explanation
Indices: 7511458--7511758 Score: 552
Period size: 151 Copynumber: 2.0 Consensus size: 151
7511448 TTTTTTTTAC
* *
7511458 TTGGGATTCTAAATGAAGCATTATTTAC-TTTTGCTTTGGACTCTTATCTTTGAGGTGCATATGT
1 TTGGGATTCTAAATGAAGCATTATTTACTTTTTGCTTTGGACTCTCATCTTTGAGGTGCATATCT
7511522 TTCTTTCTTT-TTTTTTTTATTTTTTAATGAAAGAATTATATTTGGACTGTGAATATTCATATAA
66 TTCTTTCTTTATTTTTTTTATTTTTTAATGAAAGAATTATATTTGGACTGTGAATATTCATATAA
7511586 TCATGAACAACATTCCAAAAT
131 TCATGAACAACATTCCAAAAT
* *
7511607 TTGGGATTCTAAATGAAGCCTTATTTACTTTTTGCTTTGGACTCTCATCTTTGAGGTGCATGTCT
1 TTGGGATTCTAAATGAAGCATTATTTACTTTTTGCTTTGGACTCTCATCTTTGAGGTGCATATCT
7511672 TTCTTTCTTTATTTTTTTTATTTTTTAATGAAAGAATTATATTTGGACTGTGAATATTCATATAA
66 TTCTTTCTTTATTTTTTTTATTTTTTAATGAAAGAATTATATTTGGACTGTGAATATTCATATAA
7511737 TCATGAACAACATTCCAAAAT
131 TCATGAACAACATTCCAAAAT
7511758 T
1 T
7511759 CTTTCTTTTA
Statistics
Matches: 146, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
149 27 0.18
150 43 0.29
151 76 0.52
ACGTcount: A:0.28, C:0.12, G:0.13, T:0.47
Consensus pattern (151 bp):
TTGGGATTCTAAATGAAGCATTATTTACTTTTTGCTTTGGACTCTCATCTTTGAGGTGCATATCT
TTCTTTCTTTATTTTTTTTATTTTTTAATGAAAGAATTATATTTGGACTGTGAATATTCATATAA
TCATGAACAACATTCCAAAAT
Found at i:7512659 original size:139 final size:139
Alignment explanation
Indices: 7512409--7512828 Score: 822
Period size: 139 Copynumber: 3.0 Consensus size: 139
7512399 CTCAAGGTTC
7512409 TTATGATGGTGAAAATTAAGCTGTATGAAATATCTCAAATTTGATCATATAGGTCATAAAAGGTT
1 TTATGATGGTGAAAATTAAGCTGTATGAAATATCTCAAATTTGATCATATAGGTCATAAAAGGTT
*
7512474 TATTTTAGTTCCAAACTGTTTAGCATTTTTAGTAAAAATAAGGGAAAATGTATTTATGCATGAAA
66 TATTTTAGTTCCAAACTGTTTAGCATTTTTGGTAAAAATAAGGGAAAATGTATTTATGCATGAAA
7512539 CAAATTGTA
131 CAAATTGTA
7512548 TTATGATGGTGAAAATTAAGCTGTATGAAATATCTCAAATTTGATCATATAGGTCATAAAAGGTT
1 TTATGATGGTGAAAATTAAGCTGTATGAAATATCTCAAATTTGATCATATAGGTCATAAAAGGTT
7512613 TATTTTAGTTCCAAACTGTTTAGCATTTTTGGTAAAAATAAGGGAAAATGTATTTATGCATGAAA
66 TATTTTAGTTCCAAACTGTTTAGCATTTTTGGTAAAAATAAGGGAAAATGTATTTATGCATGAAA
7512678 CAAATTGTA
131 CAAATTGTA
*
7512687 TTATGATGGAGAAAATTAAGCTGTATGAAATATCTCAAATTTGATCATATAGGTCATAAAAGGTT
1 TTATGATGGTGAAAATTAAGCTGTATGAAATATCTCAAATTTGATCATATAGGTCATAAAAGGTT
7512752 TATTTTAGTTCCAAACTGTTTAGCATTTTTGGTAAAAATAAGGGAAAATGTATTTATGCATGAAA
66 TATTTTAGTTCCAAACTGTTTAGCATTTTTGGTAAAAATAAGGGAAAATGTATTTATGCATGAAA
7512817 CAAATTGTA
131 CAAATTGTA
7512826 TTA
1 TTA
7512829 GGCGAGAAGA
Statistics
Matches: 279, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
139 279 1.00
ACGTcount: A:0.39, C:0.08, G:0.17, T:0.37
Consensus pattern (139 bp):
TTATGATGGTGAAAATTAAGCTGTATGAAATATCTCAAATTTGATCATATAGGTCATAAAAGGTT
TATTTTAGTTCCAAACTGTTTAGCATTTTTGGTAAAAATAAGGGAAAATGTATTTATGCATGAAA
CAAATTGTA
Found at i:7517469 original size:3 final size:3
Alignment explanation
Indices: 7517463--7517509 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
7517453 TTTCTTTAAA
*
7517463 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATA ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
7517510 GCATAACTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:7520909 original size:23 final size:22
Alignment explanation
Indices: 7520883--7520925 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
7520873 TTCACTTTTC
* *
7520883 TCTTTTTGTTTTTTGTTTTTGTA
1 TCTTTTTATCTTTT-TTTTTGTA
7520906 TCTTTTTATCTTTTTTTTTG
1 TCTTTTTATCTTTTTTTTTG
7520926 CATGAGTTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.05, C:0.07, G:0.09, T:0.79
Consensus pattern (22 bp):
TCTTTTTATCTTTTTTTTTGTA
Found at i:7529903 original size:47 final size:47
Alignment explanation
Indices: 7529837--7529927 Score: 137
Period size: 47 Copynumber: 1.9 Consensus size: 47
7529827 TAAACAAATG
* * *
7529837 ATAATGATAATTTATGATGATTTTAAAGTTTGATCCATGATTTGTAT
1 ATAAAGATAATTTACGATGATTTTAAAGATTGATCCATGATTTGTAT
* *
7529884 ATAAAGATGATTTACGATGATTTTAATGATTGATCCATGATTTG
1 ATAAAGATAATTTACGATGATTTTAAAGATTGATCCATGATTTG
7529928 GTTTGATTAC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 39 1.00
ACGTcount: A:0.34, C:0.05, G:0.16, T:0.44
Consensus pattern (47 bp):
ATAAAGATAATTTACGATGATTTTAAAGATTGATCCATGATTTGTAT
Found at i:7530949 original size:62 final size:61
Alignment explanation
Indices: 7530883--7531002 Score: 136
Period size: 62 Copynumber: 2.0 Consensus size: 61
7530873 AAAAATTATT
* * *
7530883 ATGATCTGTATTCAGTAATTACATCATCTTTTTTTA-TAGTAATTTAAAAATTCTT-CATGATA
1 ATGATCTGCATTCAGTAACTACATCA--TTTTTTTAGTAATAATTTAAAAA-TCTTGCATGATA
* * * *
7530945 ATGATTTGCCTTCATTAACTATATCATTTTTTTAGTAATAATTTAAAAATCTTGCATG
1 ATGATCTGCATTCAGTAACTACATCATTTTTTTAGTAATAATTTAAAAATCTTGCATG
7531003 CCAGTGATCT
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
60 12 0.24
61 17 0.35
62 20 0.41
ACGTcount: A:0.33, C:0.12, G:0.08, T:0.47
Consensus pattern (61 bp):
ATGATCTGCATTCAGTAACTACATCATTTTTTTAGTAATAATTTAAAAATCTTGCATGATA
Found at i:7535102 original size:22 final size:22
Alignment explanation
Indices: 7535055--7535102 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
7535045 TATATTTTTT
* *
7535055 ATTTTTATCAAATTTATATACA
1 ATTTTTATAAAATTTATAAACA
*
7535077 ATTTTTATTAAAATTT-TAAACC
1 ATTTTTA-TAAAATTTATAAACA
7535099 ATTT
1 ATTT
7535103 CACGTTTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (22 bp):
ATTTTTATAAAATTTATAAACA
Found at i:7546833 original size:15 final size:15
Alignment explanation
Indices: 7546785--7546833 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
7546775 ACTTTGCTAA
* *
7546785 TTTGTAATTTATAAT
1 TTTGTAATTAAAAAT
* *
7546800 TTTTTAATTACAAAT
1 TTTGTAATTAAAAAT
*
7546815 TTTGTAATTAAAAAC
1 TTTGTAATTAAAAAT
7546830 TTTG
1 TTTG
7546834 GTATTTTTTA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.37, C:0.04, G:0.06, T:0.53
Consensus pattern (15 bp):
TTTGTAATTAAAAAT
Found at i:7549590 original size:28 final size:29
Alignment explanation
Indices: 7549537--7549593 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
7549527 TAATTTTTAT
7549537 AAAATTTTATCAATATATTGAAAAAGATAA
1 AAAATTTTATCAATATATTG-AAAAGATAA
7549567 AAAATTTTA-CTAATATATTG-AAAGATA
1 AAAATTTTATC-AATATATTGAAAAGATA
7549594 TTTATGAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
28 7 0.27
29 1 0.04
30 18 0.69
ACGTcount: A:0.54, C:0.04, G:0.07, T:0.35
Consensus pattern (29 bp):
AAAATTTTATCAATATATTGAAAAGATAA
Found at i:7551445 original size:29 final size:29
Alignment explanation
Indices: 7551402--7551461 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
7551392 ACATCTTTAA
* * * *
7551402 AAAATCTTAATAGTCATGTTCTAAATTAT
1 AAAATCTCAACAGTCATATTCTAAAGTAT
*
7551431 AAAATCTCAACAGTCATATTTTAAAGTAT
1 AAAATCTCAACAGTCATATTCTAAAGTAT
7551460 AA
1 AA
7551462 TACTTTTCTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.37
Consensus pattern (29 bp):
AAAATCTCAACAGTCATATTCTAAAGTAT
Found at i:7551933 original size:180 final size:183
Alignment explanation
Indices: 7551637--7551983 Score: 452
Period size: 180 Copynumber: 1.9 Consensus size: 183
7551627 CCATTGTAGC
*
7551637 AAAAAAAAAAAAAATCTAGACAGCTTCATATGTAACATTTAAACAACAAAGAAAAAAAAAATAAA
1 AAAAAAAAAAAAAATCTAAACAGCTTCATATGTAACATTTAAACAACAAAGAAAAAAAAAATAAA
* * * *
7551702 AATAGTAAAAATACCTGCAATGGGCAACAGAAAAATACACCTGGCTACCCTTAGATGTAGCCCAA
66 AACAGTAAAAATACCTGCAATGGGCAACAGAAAAACACACCTGGATACCCTTAGATGCAGCCCAA
*
7551767 CCTTTCAACACATCATGTTCCACTGCAACTATCGCTACTAATTGTAGCAAACA
131 CCTTTCAACACATCAGGTTCCACTGCAACTATCGCTACTAATTGTAGCAAACA
* ** *
7551820 AAAAAAAAAAAAAATCTAAACAAAGCTTCATATGTAATATTT-AA-AAC-AA-TCAAAGAAAA-A
1 AAAAAAAAAAAAAATCTAAAC--AGCTTCATATGTAACATTTAAACAACAAAGAAAAAAAAAATA
* * * * *
7551880 AAAACGGTTAAAATACTTGCTATGGGCAATAGAAAAACACACCTGGATACCCTTAGATGCAGCCC
64 AAAACAGTAAAAATACCTGCAATGGGCAACAGAAAAACACACCTGGATACCCTTAGATGCAGCCC
* * * * * *
7551945 AATCTTTTAACGCATTAGGTTCCACTGGAACTATTGCTA
129 AACCTTTCAACACATCAGGTTCCACTGCAACTATCGCTA
7551984 TCAAAGATGA
Statistics
Matches: 141, Mismatches: 21, Indels: 7
0.83 0.12 0.04
Matches are distributed among these distances:
180 89 0.63
181 7 0.05
182 2 0.01
183 23 0.16
184 2 0.01
185 18 0.13
ACGTcount: A:0.47, C:0.19, G:0.12, T:0.22
Consensus pattern (183 bp):
AAAAAAAAAAAAAATCTAAACAGCTTCATATGTAACATTTAAACAACAAAGAAAAAAAAAATAAA
AACAGTAAAAATACCTGCAATGGGCAACAGAAAAACACACCTGGATACCCTTAGATGCAGCCCAA
CCTTTCAACACATCAGGTTCCACTGCAACTATCGCTACTAATTGTAGCAAACA
Found at i:7555262 original size:18 final size:17
Alignment explanation
Indices: 7555239--7555272 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7555229 ATATCAAAAG
7555239 TTTTATAAGAAATTTTAT
1 TTTTATAA-AAATTTTAT
*
7555257 TTTTATTAAAATTTTA
1 TTTTATAAAAATTTTA
7555273 CAATTGAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (17 bp):
TTTTATAAAAATTTTAT
Found at i:7555422 original size:16 final size:16
Alignment explanation
Indices: 7555376--7555472 Score: 54
Period size: 18 Copynumber: 5.9 Consensus size: 16
7555366 TTTCAGAATT
*
7555376 TTTTTTTAAAATTTCAG
1 TTTTTTT-AAATTTTAG
* *
7555393 TTTTTTTTATTTTTAG
1 TTTTTTTAAATTTTAG
* *
7555409 TTTTTTTAAGTTTTGTAA
1 TTTTTTTAA-ATTT-TAG
*
7555427 TTTTTTTGAATTTT--
1 TTTTTTTAAATTTTAG
***
7555441 TTGAATTAAATGTTTGAG
1 TTTTTTTAAAT-TTT-AG
7555459 TTTTTTTAAATTTT
1 TTTTTTTAAATTTT
7555473 TATAATTTTG
Statistics
Matches: 60, Mismatches: 14, Indels: 12
0.70 0.16 0.14
Matches are distributed among these distances:
14 7 0.12
15 3 0.05
16 15 0.25
17 17 0.28
18 18 0.30
ACGTcount: A:0.23, C:0.01, G:0.09, T:0.67
Consensus pattern (16 bp):
TTTTTTTAAATTTTAG
Found at i:7555479 original size:9 final size:9
Alignment explanation
Indices: 7555461--7555536 Score: 61
Period size: 9 Copynumber: 8.6 Consensus size: 9
7555451 TGTTTGAGTT
7555461 TTTTTA-AA
1 TTTTTATAA
7555469 TTTTTATAA
1 TTTTTATAA
*
7555478 TTTTGAATAA
1 TTTT-TATAA
7555488 TATTTTAT-A
1 T-TTTTATAA
*
7555497 TATTTTAAAA
1 T-TTTTATAA
7555507 TTTTTAT--
1 TTTTTATAA
* *
7555514 TTTTAAAAA
1 TTTTTATAA
7555523 TTTTTATAA
1 TTTTTATAA
7555532 TTTTT
1 TTTTT
7555537 TAAAGTATTT
Statistics
Matches: 54, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
7 5 0.09
8 6 0.11
9 31 0.57
10 9 0.17
11 3 0.06
ACGTcount: A:0.36, C:0.00, G:0.01, T:0.63
Consensus pattern (9 bp):
TTTTTATAA
Found at i:7555536 original size:19 final size:19
Alignment explanation
Indices: 7555466--7555561 Score: 76
Period size: 19 Copynumber: 5.2 Consensus size: 19
7555456 GAGTTTTTTT
*
7555466 AAATTTTTATAATTTTGAA
1 AAATTTTTATAATTTTTAA
*
7555485 TAATATTTTAT-ATATTTT-A
1 AAAT-TTTTATAAT-TTTTAA
7555504 AAA-TTTT-T-ATTTTTAA
1 AAATTTTTATAATTTTTAA
*
7555520 AAATTTTTATAATTTTTTA
1 AAATTTTTATAATTTTTAA
* * *
7555539 AAGTATTTATATTTTTTTAA
1 AAATTTTTATA-ATTTTTAA
7555559 AAA
1 AAA
7555562 AAAATTTTAT
Statistics
Matches: 61, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
15 4 0.07
16 7 0.11
17 8 0.13
18 1 0.02
19 24 0.39
20 17 0.28
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (19 bp):
AAATTTTTATAATTTTTAA
Found at i:7560289 original size:24 final size:24
Alignment explanation
Indices: 7560262--7560312 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
7560252 ATTTAATTCG
7560262 ACTTTAAGTCATTGCCAAATTATT
1 ACTTTAAGTCATTGCCAAATTATT
* * * *
7560286 ACTTTTATTTATTGCTAAATTATT
1 ACTTTAAGTCATTGCCAAATTATT
7560310 ACT
1 ACT
7560313 ATTTTTTGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.49
Consensus pattern (24 bp):
ACTTTAAGTCATTGCCAAATTATT
Found at i:7561880 original size:10 final size:9
Alignment explanation
Indices: 7561850--7561890 Score: 64
Period size: 9 Copynumber: 4.4 Consensus size: 9
7561840 AAAGTTCATT
*
7561850 AAAATTCTA
1 AAAATTTTA
7561859 AAAATTTTA
1 AAAATTTTA
7561868 AAAATTTTA
1 AAAATTTTA
7561877 AAAATTTCTA
1 AAAATTT-TA
7561887 AAAA
1 AAAA
7561891 AATTAAGGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
9 24 0.80
10 6 0.20
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (9 bp):
AAAATTTTA
Found at i:7561896 original size:19 final size:18
Alignment explanation
Indices: 7561857--7561896 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
7561847 ATTAAAATTC
**
7561857 TAAAAATTTTAAAAATTT
1 TAAAAATTTTAAAAAAAT
7561875 TAAAAATTTCTAAAAAAAT
1 TAAAAATTT-TAAAAAAAT
7561894 TAA
1 TAA
7561897 GGAAACTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (18 bp):
TAAAAATTTTAAAAAAAT
Found at i:7561956 original size:19 final size:19
Alignment explanation
Indices: 7561906--7561957 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
7561896 AGGAAACTTA
*
7561906 AAAATGTTCAAAAAATCTC
1 AAAATTTTCAAAAAATCTC
***
7561925 AAAATTAAAAAAAAATC-C
1 AAAATTTTCAAAAAATCTC
7561943 AAAATTTTTCAAAAA
1 AAAA-TTTTCAAAAA
7561958 TTAAAAAATT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
18 5 0.20
19 20 0.80
ACGTcount: A:0.62, C:0.12, G:0.02, T:0.25
Consensus pattern (19 bp):
AAAATTTTCAAAAAATCTC
Found at i:7562101 original size:23 final size:22
Alignment explanation
Indices: 7562074--7562119 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
7562064 AAATATAACA
7562074 TTTTAAAAAAACTGCAAAATTTT
1 TTTTAAAAAAACT-CAAAATTTT
**
7562097 TTTTAAAAATTCTCAAAATTTT
1 TTTTAAAAAAACTCAAAATTTT
7562119 T
1 T
7562120 CATTTTTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.43, C:0.09, G:0.02, T:0.46
Consensus pattern (22 bp):
TTTTAAAAAAACTCAAAATTTT
Found at i:7562104 original size:22 final size:22
Alignment explanation
Indices: 7562074--7562119 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
7562064 AAATATAACA
7562074 TTTTAAAAAA-ACTGCAAAATTT
1 TTTTAAAAAATACT-CAAAATTT
* *
7562096 TTTTTAAAAATTCTCAAAATTT
1 TTTTAAAAAATACTCAAAATTT
7562118 TT
1 TT
7562120 CATTTTTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 19 0.90
23 2 0.10
ACGTcount: A:0.43, C:0.09, G:0.02, T:0.46
Consensus pattern (22 bp):
TTTTAAAAAATACTCAAAATTT
Found at i:7562306 original size:21 final size:21
Alignment explanation
Indices: 7562282--7562328 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
7562272 TTGGAAAATG
* *
7562282 TAAACAATTTTTAAATTTTTT
1 TAAAAAATTTTCAAATTTTTT
*
7562303 TAAAAAATTTTCATA-TTTTT
1 TAAAAAATTTTCAAATTTTTT
7562323 TAAAAA
1 TAAAAA
7562329 TGCTAATGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (21 bp):
TAAAAAATTTTCAAATTTTTT
Found at i:7562675 original size:2 final size:2
Alignment explanation
Indices: 7562658--7562702 Score: 72
Period size: 2 Copynumber: 22.5 Consensus size: 2
7562648 CCTTTTAAGC
* *
7562658 TA TA CA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7562700 TA T
1 TA T
7562703 TTAATACATT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7564133 original size:124 final size:126
Alignment explanation
Indices: 7563924--7564165 Score: 355
Period size: 124 Copynumber: 1.9 Consensus size: 126
7563914 AATGCAAGTG
* * **
7563924 TTGAAATTCGAATTTTAAATTTGTTATTATCTTTTAAAAATAATTATATGAATAAATTAAATTGA
1 TTGAAATTCGAATTTCAAATTTATTATTATCTTTTAAAAATAATTATATGAATAAATTAAATAAA
*
7563989 ATTTTAAATTTAACATGTATTATAC-CTTTTCAATTCACCATATGATATAGAATTGCAGATT
66 ATTTTAAATTTAACATGTATTATACTC-TCTCAATTCACCATATGATATAGAATTGCAGATT
** * *
7564050 TTGAAATTCGAA-TTCAAATTTATTATTAT-TTTTTTAAATAATTATATGAATCAATTGAATAAA
1 TTGAAATTCGAATTTCAAATTTATTATTATCTTTTAAAAATAATTATATGAATAAATTAAATAAA
* *
7564113 ATTTTAAATTTAACTTGTATTATACTCTCTCAATTCACCATATGATGTAGAAT
66 ATTTTAAATTTAACATGTATTATACTCTCTCAATTCACCATATGATATAGAAT
7564166 ACTAGAATGT
Statistics
Matches: 104, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
124 76 0.73
125 16 0.15
126 12 0.12
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.45
Consensus pattern (126 bp):
TTGAAATTCGAATTTCAAATTTATTATTATCTTTTAAAAATAATTATATGAATAAATTAAATAAA
ATTTTAAATTTAACATGTATTATACTCTCTCAATTCACCATATGATATAGAATTGCAGATT
Found at i:7564863 original size:2 final size:2
Alignment explanation
Indices: 7564856--7564886 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7564846 GGTAATATTT
7564856 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7564887 TAGTAAGTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7569363 original size:3 final size:3
Alignment explanation
Indices: 7569355--7569383 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
7569345 TTTTTAAAGT
7569355 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7569384 TACTTTGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:7569979 original size:21 final size:19
Alignment explanation
Indices: 7569943--7569987 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 19
7569933 AAATTAATGC
7569943 AAAAAATTAAAATGGTATTG
1 AAAAAATTAAAATGGT-TTG
*
7569963 AAAAAATTCAAATTGGTTTGG
1 AAAAAATT-AAAATGGTTT-G
7569984 AAAA
1 AAAA
7569988 GTCATTGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.53, C:0.02, G:0.16, T:0.29
Consensus pattern (19 bp):
AAAAAATTAAAATGGTTTG
Found at i:7570890 original size:3 final size:3
Alignment explanation
Indices: 7570882--7570911 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
7570872 CTATTTAGAA
7570882 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
7570912 TTTTTGGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:7575660 original size:35 final size:34
Alignment explanation
Indices: 7575581--7575679 Score: 110
Period size: 35 Copynumber: 2.7 Consensus size: 34
7575571 ATTTTTGAGT
*
7575581 TTTTTTCAAAATTTTATAATTTTGAATAATATTTTATA
1 TTTTTT-AAAATTTTAT--TTTT-AAAAATATTTTATA
*
7575619 TATTTTAAAATTTTCATTTTTAAAAAT-TTTTATAA
1 TTTTTTAAAATTTT-ATTTTTAAAAATATTTTAT-A
7575654 TTTTTTAAAATATTTATTTTTAAAAA
1 TTTTTTAAAAT-TTTATTTTTAAAAA
7575680 AAAAATTAAG
Statistics
Matches: 55, Mismatches: 3, Indels: 9
0.82 0.04 0.13
Matches are distributed among these distances:
34 6 0.11
35 27 0.49
36 7 0.13
37 8 0.15
38 7 0.13
ACGTcount: A:0.39, C:0.02, G:0.01, T:0.58
Consensus pattern (34 bp):
TTTTTTAAAATTTTATTTTTAAAAATATTTTATA
Found at i:7575702 original size:22 final size:23
Alignment explanation
Indices: 7575677--7575721 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
7575667 TTATTTTTAA
7575677 AAAAAAAATTAAG-AATTTTTTT
1 AAAAAAAATTAAGAAATTTTTTT
* *
7575699 AAAAAAATTTATGAAATTTTTTT
1 AAAAAAAATTAAGAAATTTTTTT
7575722 TAATATTGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.44
Consensus pattern (23 bp):
AAAAAAAATTAAGAAATTTTTTT
Found at i:7580228 original size:20 final size:20
Alignment explanation
Indices: 7580205--7580249 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
7580195 TATTTATATA
*
7580205 TATTTAGTAA-ATAAATTTTT
1 TATTTAATAATATAAA-TTTT
*
7580225 TATTAAATAATATAAATTTT
1 TATTTAATAATATAAATTTT
7580245 TATTT
1 TATTT
7580250 TGAATTAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (20 bp):
TATTTAATAATATAAATTTT
Found at i:7583229 original size:10 final size:10
Alignment explanation
Indices: 7583200--7583231 Score: 50
Period size: 9 Copynumber: 3.4 Consensus size: 10
7583190 AAAGTTCATT
7583200 AAAA-TTCTA
1 AAAATTTCTA
7583209 AAAATTT-TA
1 AAAATTTCTA
7583218 AAAATTTCTA
1 AAAATTTCTA
7583228 AAAA
1 AAAA
7583232 AATTAAGGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 13 0.62
10 8 0.38
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.34
Consensus pattern (10 bp):
AAAATTTCTA
Found at i:7583297 original size:19 final size:19
Alignment explanation
Indices: 7583247--7583298 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
7583237 AGGAAACTTA
*
7583247 AAAATGTTCAAAAAATCTC
1 AAAATTTTCAAAAAATCTC
***
7583266 AAAATTAAAAAAAAATC-C
1 AAAATTTTCAAAAAATCTC
7583284 AAAATTTTTCAAAAA
1 AAAA-TTTTCAAAAA
7583299 TTAAAAAATT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
18 5 0.20
19 20 0.80
ACGTcount: A:0.62, C:0.12, G:0.02, T:0.25
Consensus pattern (19 bp):
AAAATTTTCAAAAAATCTC
Found at i:7583454 original size:22 final size:22
Alignment explanation
Indices: 7583415--7583460 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
7583405 AAATATAACA
*
7583415 TTTTAAAAAAACTGCAAATTTT
1 TTTTAAAAAAACTGCAAAATTT
*
7583437 TTTTAAAAAATTCT-CAAAATTT
1 TTTTAAAAAA-ACTGCAAAATTT
7583459 TT
1 TT
7583461 CATTTTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 19 0.90
23 2 0.10
ACGTcount: A:0.43, C:0.09, G:0.02, T:0.46
Consensus pattern (22 bp):
TTTTAAAAAAACTGCAAAATTT
Found at i:7583651 original size:21 final size:21
Alignment explanation
Indices: 7583627--7583673 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
7583617 TTGGAAAATG
* *
7583627 TAAACAATTTTTAAATTTTTT
1 TAAAAAATTTTCAAATTTTTT
*
7583648 TAAAAAATTTTCATA-TTTTT
1 TAAAAAATTTTCAAATTTTTT
7583668 TAAAAA
1 TAAAAA
7583674 TGCTAATGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (21 bp):
TAAAAAATTTTCAAATTTTTT
Found at i:7584019 original size:2 final size:2
Alignment explanation
Indices: 7584002--7584042 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
7583992 CCTTTTAAGC
* *
7584002 TA TA CA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7584043 TTAATACATT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7585474 original size:124 final size:126
Alignment explanation
Indices: 7585265--7585506 Score: 355
Period size: 124 Copynumber: 1.9 Consensus size: 126
7585255 AATGCAAGTG
* * **
7585265 TTGAAATTCGAATTTTAAATTTGTTATTATCTTTTAAAAATAATTATATGAATAAATTAAATTGA
1 TTGAAATTCGAATTTCAAATTTATTATTATCTTTTAAAAATAATTATATGAATAAATTAAATAAA
*
7585330 ATTTTAAATTTAACATGTATTATAC-CTTTTCAATTCACCATATGATATAGAATTGCAGATT
66 ATTTTAAATTTAACATGTATTATACTC-TCTCAATTCACCATATGATATAGAATTGCAGATT
** * *
7585391 TTGAAATTCGAA-TTCAAATTTATTATTAT-TTTTTTAAATAATTATATGAATCAATTGAATAAA
1 TTGAAATTCGAATTTCAAATTTATTATTATCTTTTAAAAATAATTATATGAATAAATTAAATAAA
* *
7585454 ATTTTAAATTTAACTTGTATTATACTCTCTCAATTCACCATATGATGTAGAAT
66 ATTTTAAATTTAACATGTATTATACTCTCTCAATTCACCATATGATATAGAAT
7585507 ACTAGAATGT
Statistics
Matches: 104, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
124 76 0.73
125 16 0.15
126 12 0.12
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.45
Consensus pattern (126 bp):
TTGAAATTCGAATTTCAAATTTATTATTATCTTTTAAAAATAATTATATGAATAAATTAAATAAA
ATTTTAAATTTAACATGTATTATACTCTCTCAATTCACCATATGATATAGAATTGCAGATT
Found at i:7585706 original size:2 final size:2
Alignment explanation
Indices: 7585699--7585727 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7585689 TTCATTGAAT
7585699 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7585728 TTCATTTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7586210 original size:2 final size:2
Alignment explanation
Indices: 7586203--7586237 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
7586193 GGTAATATTT
7586203 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7586238 TAGTAAGTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7588010 original size:21 final size:21
Alignment explanation
Indices: 7587984--7588032 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
7587974 TAATGTGTTG
7587984 CATATTTTCAAAATTATCCAT
1 CATATTTTCAAAATTATCCAT
7588005 CATATTTTCAAAATTATCCAT
1 CATATTTTCAAAATTATCCAT
*
7588026 CCTATTT
1 CATATTT
7588033 AAAATTTTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.35, C:0.20, G:0.00, T:0.45
Consensus pattern (21 bp):
CATATTTTCAAAATTATCCAT
Found at i:7590731 original size:3 final size:3
Alignment explanation
Indices: 7590723--7590751 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
7590713 TTTATAAAGT
7590723 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7590752 TACTTTGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:7592259 original size:3 final size:3
Alignment explanation
Indices: 7592251--7592286 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
7592241 CCTATTTAGA
7592251 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
7592287 TTTGGAAAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:7592839 original size:190 final size:190
Alignment explanation
Indices: 7592477--7592823 Score: 413
Period size: 190 Copynumber: 1.8 Consensus size: 190
7592467 AAAAGAATAC
* * * *
7592477 AATTATTTGTATTGAAATTTCATCTAAATTATTTCACTATTTGGGCCAAATTTAGAGAAAATTTC
1 AATTATTTGTATTGAAATTTCATCTAAATTATTCCACCATTTAGGACAAATTTAGAGAAAATTTC
* ** * ** * **
7592542 TTACATAGAGATTTCTTAGGAATTTACCATTTGAAATTTTAAGAATCTCATCTTTGGGTAATTTG
66 TCACATAGAGATTTAATAGAAATTTACCATTTGAAATTTTAAGAATCTCATAATTGGATAATTAA
*
7592607 TATTTAATTCCAAAAAATTTTTATATTTTTATTTATTTATTTTGTTGAAAAATAAATATT
131 TATTTAATTCCAAAAAATATTTATATTTTTATTTATTTATTTTGTTGAAAAATAAATATT
* *
7592667 AATTA-TTGTTATTGAAACTTT-ATCTAAATTATTCCACCATTTAGGATAAATTTAGATAAAATT
1 AATTATTTG-TATTGAAA-TTTCATCTAAATTATTCCACCATTTAGGACAAATTTAGAGAAAATT
* *
7592730 TCTCACCTA-AGAATTTAATAGAAATTTATCATTTGAAATTTCTATA-AAT-TCTATAATTGGAT
64 TCTCACATAGAG-ATTTAATAGAAATTTACCATTTGAAATTT-TA-AGAATCTC-ATAATTGGAT
*
7592792 AATTAATATTT-ATTCC-CAAAATATTTAT-TTTT
125 AATTAATATTTAATTCCAAAAAATATTTATATTTT
7592824 CTACCTTTTT
Statistics
Matches: 132, Mismatches: 19, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
188 4 0.03
189 15 0.11
190 88 0.67
191 24 0.18
192 1 0.01
ACGTcount: A:0.37, C:0.09, G:0.08, T:0.46
Consensus pattern (190 bp):
AATTATTTGTATTGAAATTTCATCTAAATTATTCCACCATTTAGGACAAATTTAGAGAAAATTTC
TCACATAGAGATTTAATAGAAATTTACCATTTGAAATTTTAAGAATCTCATAATTGGATAATTAA
TATTTAATTCCAAAAAATATTTATATTTTTATTTATTTATTTTGTTGAAAAATAAATATT
Found at i:7593192 original size:13 final size:13
Alignment explanation
Indices: 7593174--7593198 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7593164 TCCCTCTCTC
7593174 TTTCCTCTCATTT
1 TTTCCTCTCATTT
7593187 TTTCCTCTCATT
1 TTTCCTCTCATT
7593199 CTCTCTCTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.00, T:0.60
Consensus pattern (13 bp):
TTTCCTCTCATTT
Found at i:7593745 original size:17 final size:16
Alignment explanation
Indices: 7593723--7593758 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7593713 CTCAACACAC
*
7593723 TTTCTTTTTCCTTTTTT
1 TTTCTTTTT-ATTTTTT
7593740 TTTCTTTTTATTTTTT
1 TTTCTTTTTATTTTTT
7593756 TTT
1 TTT
7593759 AAAAAGTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.86
Consensus pattern (16 bp):
TTTCTTTTTATTTTTT
Found at i:7593950 original size:41 final size:41
Alignment explanation
Indices: 7593797--7593982 Score: 255
Period size: 42 Copynumber: 4.4 Consensus size: 41
7593787 AGACTCAACG
* * *
7593797 ACTTTGAAAGAATAAAATGCTCATCTAAATAGAGGTAACAAA
1 ACTTTGAAA-AATAAATTGCTCCTCTAAATAGAGGCAACAAA
**
7593839 ACTTTGAAAAAATAAATTGCTTTTCTAAATAGAGGCAACAAA
1 ACTTTG-AAAAATAAATTGCTCCTCTAAATAGAGGCAACAAA
* *
7593881 ACTTTGGAAAAGTAAATTGCTCCTCTAAATAAAGGCAACAAA
1 ACTTT-GAAAAATAAATTGCTCCTCTAAATAGAGGCAACAAA
* *
7593923 ACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCAACAAA
1 ACTTTGAAAAATAAATTGCTCCTCTAAATAGAGGCAACAAA
7593964 ACTTTGAAAAAATAAATTG
1 ACTTTG-AAAAATAAATTG
7593983 AATAAAATAA
Statistics
Matches: 128, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
41 38 0.30
42 86 0.67
43 4 0.03
ACGTcount: A:0.47, C:0.14, G:0.13, T:0.25
Consensus pattern (41 bp):
ACTTTGAAAAATAAATTGCTCCTCTAAATAGAGGCAACAAA
Found at i:7593963 original size:83 final size:84
Alignment explanation
Indices: 7593773--7593982 Score: 264
Period size: 84 Copynumber: 2.5 Consensus size: 84
7593763 AGTAAACAAA
* * * * * *
7593773 GCTCCTCTAAACAGAGAC-TCAACGACTTT-GAAAGAATAAAATGCTCATCTAAATAGAGGTAAC
1 GCTCCTCTAAACAGAGGCAACAA-AACTTTGGAAA-AATAAATTGCTCATCTAAATAAAGGCAAC
7593836 AAAACTTTGAAAAAATAAATT
64 AAAACTTTGAAAAAATAAATT
** * * *
7593857 GCTTTTCTAAATAGAGGCAACAAAACTTTGGAAAAGTAAATTGCTCCTCTAAATAAAGGCAACAA
1 GCTCCTCTAAACAGAGGCAACAAAACTTTGGAAAAATAAATTGCTCATCTAAATAAAGGCAACAA
*
7593922 AACTTTG-GAAAATAAATT
66 AACTTTGAAAAAATAAATT
*
7593940 GCTCCTCTAAACAGAGGCAACAAAACTTTGAAAAAATAAATTG
1 GCTCCTCTAAACAGAGGCAACAAAACTTTGGAAAAATAAATTG
7593983 AATAAAATAA
Statistics
Matches: 107, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
83 48 0.45
84 52 0.49
85 7 0.07
ACGTcount: A:0.46, C:0.16, G:0.14, T:0.24
Consensus pattern (84 bp):
GCTCCTCTAAACAGAGGCAACAAAACTTTGGAAAAATAAATTGCTCATCTAAATAAAGGCAACAA
AACTTTGAAAAAATAAATT
Found at i:7593991 original size:14 final size:13
Alignment explanation
Indices: 7593967--7593996 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
7593957 CAACAAAACT
7593967 TTGAAAAAATAAA
1 TTGAAAAAATAAA
7593980 TTGAATAAAATAAA
1 TTGAA-AAAATAAA
7593994 TTG
1 TTG
7593997 CTTCTCTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.30
Consensus pattern (13 bp):
TTGAAAAAATAAA
Found at i:7594023 original size:56 final size:56
Alignment explanation
Indices: 7593930--7594038 Score: 173
Period size: 56 Copynumber: 1.9 Consensus size: 56
7593920 AAAACTTTGG
7593930 AAAATAAATTGCTCCTCTAAACAGAGGCAACAAAACTTTGAAAAAATAAATTGAAT
1 AAAATAAATTGCTCCTCTAAACAGAGGCAACAAAACTTTGAAAAAATAAATTGAAT
* * * * *
7593986 AAAATAAATTGCTTCTCTAAACAGAGGGAACAGAACTTTGGAAAAGTAAATTG
1 AAAATAAATTGCTCCTCTAAACAGAGGCAACAAAACTTTGAAAAAATAAATTG
7594039 CTCCTCTAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 48 1.00
ACGTcount: A:0.49, C:0.13, G:0.15, T:0.24
Consensus pattern (56 bp):
AAAATAAATTGCTCCTCTAAACAGAGGCAACAAAACTTTGAAAAAATAAATTGAAT
Found at i:7594054 original size:42 final size:42
Alignment explanation
Indices: 7593986--7594085 Score: 166
Period size: 42 Copynumber: 2.4 Consensus size: 42
7593976 TAAATTGAAT
* *
7593986 AAAA-TAAATTGCTTCTCTAAACAGAGGGAACAGAACTTTGG
1 AAAAGTAAATTGCTCCTCTAAACAGAGGCAACAGAACTTTGG
*
7594027 AAAAGTAAATTGCTCCTCTAAATAGAGGCAACAGAACTTTGG
1 AAAAGTAAATTGCTCCTCTAAACAGAGGCAACAGAACTTTGG
7594069 AAAAGTAAATTGCTCCT
1 AAAAGTAAATTGCTCCT
7594086 TCGACAATCA
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
41 4 0.07
42 51 0.93
ACGTcount: A:0.41, C:0.16, G:0.18, T:0.25
Consensus pattern (42 bp):
AAAAGTAAATTGCTCCTCTAAACAGAGGCAACAGAACTTTGG
Found at i:7594065 original size:98 final size:98
Alignment explanation
Indices: 7593888--7594080 Score: 289
Period size: 98 Copynumber: 2.0 Consensus size: 98
7593878 AAAACTTTGG
*
7593888 AAAAGTAAATTGCTCCTCTAAATAAAGGCAACAAAACTTTGGAAAATAAATTGCTCCTCTAAACA
1 AAAAGTAAATTGCTCCTCTAAACAAAGGCAACAAAACTTTGGAAAATAAATTGCTCCTCTAAACA
7593953 GAGGCAACAAAACTTTGAAAAAATAAATTGAAT
66 GAGGCAACAAAACTTTGAAAAAATAAATTGAAT
* * * * *
7593986 AAAA-TAAATTGCTTCTCTAAACAGAGGGAACAGAACTTTGGAAAAGTAAATTGCTCCTCTAAAT
1 AAAAGTAAATTGCTCCTCTAAACAAAGGCAACAAAACTTTGGAAAA-TAAATTGCTCCTCTAAAC
* * *
7594050 AGAGGCAACAGAACTTTGGAAAAGTAAATTG
65 AGAGGCAACAAAACTTTGAAAAAATAAATTG
7594081 CTCCTTCGAC
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
97 36 0.42
98 49 0.58
ACGTcount: A:0.46, C:0.15, G:0.16, T:0.24
Consensus pattern (98 bp):
AAAAGTAAATTGCTCCTCTAAACAAAGGCAACAAAACTTTGGAAAATAAATTGCTCCTCTAAACA
GAGGCAACAAAACTTTGAAAAAATAAATTGAAT
Found at i:7605409 original size:19 final size:19
Alignment explanation
Indices: 7605385--7605424 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
7605375 GAATAGGCTC
7605385 GGGTCTACTAACCAAGACA
1 GGGTCTACTAACCAAGACA
7605404 GGGTCTACTAACCAAGACA
1 GGGTCTACTAACCAAGACA
7605423 GG
1 GG
7605425 TTTTACGAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.25, T:0.15
Consensus pattern (19 bp):
GGGTCTACTAACCAAGACA
Found at i:7607805 original size:33 final size:33
Alignment explanation
Indices: 7607760--7607829 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
7607750 AAAGTGAAAA
7607760 AAAAATGAAATGACCTAAATTGAACTAAAGTCT
1 AAAAATGAAATGACCTAAATTGAACTAAAGTCT
* * **
7607793 AAAAATGTAATGACTTGGATTGAACTAAAGTCT
1 AAAAATGAAATGACCTAAATTGAACTAAAGTCT
7607826 AAAA
1 AAAA
7607830 GTGCAATTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.50, C:0.10, G:0.14, T:0.26
Consensus pattern (33 bp):
AAAAATGAAATGACCTAAATTGAACTAAAGTCT
Found at i:7608032 original size:32 final size:32
Alignment explanation
Indices: 7607955--7608096 Score: 87
Period size: 32 Copynumber: 4.5 Consensus size: 32
7607945 AGTTGAGTTG
* * * *
7607955 AGGTCGAAGATG-AAGGTAACCGAATTGAGCCA
1 AGGTCGAAGATGAAAGGGAACAG-ACTAAGCCA
* *
7607987 ACGTCGAAGATG-AAGGTAACTAGACTAAGCCA
1 AGGTCGAAGATGAAAGGGAAC-AGACTAAGCCA
* *
7608019 AGGTCG-AGAATGAAAGGGATCGGACTAAGCCA
1 AGGTCGAAG-ATGAAAGGGAACAGACTAAGCCA
** * * *
7608051 AGGTAAAAAATG-AAGGTGATCA-AATAAGCCA
1 AGGTCGAAGATGAAAGG-GAACAGACTAAGCCA
*
7608082 AGGTTGAAGATGAAA
1 AGGTCGAAGATGAAA
7608097 TAAAAAAATT
Statistics
Matches: 88, Mismatches: 16, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
31 23 0.26
32 57 0.65
33 8 0.09
ACGTcount: A:0.42, C:0.13, G:0.29, T:0.15
Consensus pattern (32 bp):
AGGTCGAAGATGAAAGGGAACAGACTAAGCCA
Found at i:7610936 original size:20 final size:21
Alignment explanation
Indices: 7610907--7610948 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
7610897 GCTTCTATAT
*
7610907 TCTCATTTTTCATC-TTTCAA
1 TCTCACTTTTCATCTTTTCAA
*
7610927 TCTCACTTTTCTTCTTTTCAA
1 TCTCACTTTTCATCTTTTCAA
7610948 T
1 T
7610949 TTTTCTTTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.17, C:0.26, G:0.00, T:0.57
Consensus pattern (21 bp):
TCTCACTTTTCATCTTTTCAA
Found at i:7612006 original size:58 final size:58
Alignment explanation
Indices: 7611941--7612169 Score: 203
Period size: 66 Copynumber: 3.7 Consensus size: 58
7611931 TTGTGTAGAA
*
7611941 AAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTGAAAAGC-TTATTTTCAAG
1 AAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTGAAAA-CTTTAATTTCAAG
* * *
7611999 AAAAATTGATACTTTCTACTTTTTCCCAAAAATATTTTTTGTTTTTTGGAAACTTTAATTTCGAG
1 AAAAATTGATACTTTCAACTTTTTCCCAAAAATA-------TTTTTTGAAAACTTTAATTTCAAG
* *
7612064 AAAAATTGATACTTTCAAC-TTTTCTCCAAAAATATTTTTTTGTTTTTTGGAAACTTTAATTTCG
1 AAAAATTGATACTTTCAACTTTTTC-CCAAAAATA--------TTTTTTGAAAACTTTAATTTCA
7612128 AG
57 AG
* *
7612130 GAAAATTGATAATTTCAAC-TTTTCCTCAAAAATATTTTTT
1 AAAAATTGATACTTTCAACTTTTTCC-CAAAAATATTTTTT
7612170 TTTACAGTTC
Statistics
Matches: 153, Mismatches: 7, Indels: 22
0.84 0.04 0.12
Matches are distributed among these distances:
58 39 0.25
64 6 0.04
65 47 0.31
66 61 0.40
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (58 bp):
AAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTGAAAACTTTAATTTCAAG
Done.