Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25814696
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 122000 characters in sequence are not A, C, G, or T
File 38 of 126
Found at i:7715326 original size:27 final size:27
Alignment explanation
Indices: 7715281--7715351 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 27
7715271 AATTTGACAA
7715281 TATGAAATATTTGTAAAAATTATAAAAAAT
1 TATGAAA-ATTT-T-AAAATTATAAAAAAT
* *
7715311 TATGATAATTTTAAAATTTTAAAAAAT
1 TATGAAAATTTTAAAATTATAAAAAAT
7715338 TATGAAAATTTTAA
1 TATGAAAATTTTAA
7715352 CAAAAACTAC
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 27 0.71
28 1 0.03
29 4 0.11
30 6 0.16
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.41
Consensus pattern (27 bp):
TATGAAAATTTTAAAATTATAAAAAAT
Found at i:7715436 original size:17 final size:17
Alignment explanation
Indices: 7715414--7715461 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 17
7715404 TCTTAATATT
* *
7715414 TTAAAAAACT-TAAAAC
1 TTAAAAAAATGTAAAAA
7715430 TTAAAAAAATGTAAAAA
1 TTAAAAAAATGTAAAAA
*
7715447 TTAAAAAAATCTAAA
1 TTAAAAAAATGTAAA
7715462 TTTTTTGAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
16 9 0.32
17 19 0.68
ACGTcount: A:0.67, C:0.06, G:0.02, T:0.25
Consensus pattern (17 bp):
TTAAAAAAATGTAAAAA
Found at i:7715482 original size:20 final size:20
Alignment explanation
Indices: 7715459--7715544 Score: 61
Period size: 19 Copynumber: 4.5 Consensus size: 20
7715449 AAAAAAATCT
7715459 AAATTTTTTGAAAATTTTTA
1 AAATTTTTTGAAAATTTTTA
* * *
7715479 AAA-TTTTAGAAAATATATA
1 AAATTTTTTGAAAATTTTTA
* * * *
7715498 AAA-ATTTTGAAAAATATGA
1 AAATTTTTTGAAAATTTTTA
* * *
7715517 AAGTTTTTT-AAAACTTCTA
1 AAATTTTTTGAAAATTTTTA
7715536 AAATTTTTT
1 AAATTTTTT
7715545 TTAAAAAATA
Statistics
Matches: 48, Mismatches: 17, Indels: 3
0.71 0.25 0.04
Matches are distributed among these distances:
19 41 0.85
20 7 0.15
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (20 bp):
AAATTTTTTGAAAATTTTTA
Found at i:7715749 original size:15 final size:15
Alignment explanation
Indices: 7715729--7715764 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
7715719 ATTTTTTTGA
7715729 ATTTTAATAAATTTT
1 ATTTTAATAAATTTT
*
7715744 ATTTTATTAAATTTT
1 ATTTTAATAAATTTT
7715759 -TTTTAA
1 ATTTTAA
7715765 ATCTTTTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
ATTTTAATAAATTTT
Found at i:7715764 original size:11 final size:10
Alignment explanation
Indices: 7715744--7715791 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
7715734 AATAAATTTT
*
7715744 ATTTTATTAA
1 ATTTTTTTAA
7715754 ATTTTTTTTAA
1 A-TTTTTTTAA
* *
7715765 ATCTTTTTGA
1 ATTTTTTTAA
*
7715775 ATTTTTTTGA
1 ATTTTTTTAA
7715785 ATTTTTT
1 ATTTTTT
7715792 GAATTTTAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
10 24 0.73
11 9 0.27
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.69
Consensus pattern (10 bp):
ATTTTTTTAA
Found at i:7715780 original size:9 final size:9
Alignment explanation
Indices: 7715757--7715860 Score: 77
Period size: 9 Copynumber: 11.2 Consensus size: 9
7715747 TTATTAAATT
*
7715757 TTTTTTAAA
1 TTTTTTGAA
7715766 TCTTTTTGAA
1 T-TTTTTGAA
7715776 TTTTTTTGAA
1 -TTTTTTGAA
7715786 TTTTTTGAA
1 TTTTTTGAA
* *
7715795 -TTTTAGAT
1 TTTTTTGAA
7715803 TTTTTTGAAA
1 TTTTTTG-AA
*
7715813 ATTTTT-AA
1 TTTTTTGAA
**
7715821 GTTTTTTGCT
1 -TTTTTTGAA
7715831 TTTTTTGAA
1 TTTTTTGAA
**
7715840 TTTTTAAAA
1 TTTTTTGAA
7715849 TTTTTTAGAA
1 TTTTTT-GAA
7715859 TT
1 TT
7715861 ATTTCTAGAA
Statistics
Matches: 73, Mismatches: 15, Indels: 13
0.72 0.15 0.13
Matches are distributed among these distances:
8 8 0.11
9 39 0.53
10 25 0.34
11 1 0.01
ACGTcount: A:0.25, C:0.02, G:0.09, T:0.64
Consensus pattern (9 bp):
TTTTTTGAA
Found at i:7715910 original size:10 final size:9
Alignment explanation
Indices: 7715757--7715910 Score: 62
Period size: 9 Copynumber: 16.3 Consensus size: 9
7715747 TTATTAAATT
7715757 TTTTTTAAA
1 TTTTTTAAA
*
7715766 TCTTTTTGAAT
1 T-TTTTT-AAA
*
7715777 TTTTTTGAA
1 TTTTTTAAA
*
7715786 TTTTTTGAA
1 TTTTTTAAA
*
7715795 --TTTTAGAT
1 TTTTTTA-AA
7715803 TTTTTTGAAA
1 TTTTTT-AAA
* *
7715813 ATTTTTAAG
1 TTTTTTAAA
***
7715822 TTTTTTGCT
1 TTTTTTAAA
*
7715831 TTTTTTGAA
1 TTTTTTAAA
*
7715840 TTTTTAAAA
1 TTTTTTAAA
7715849 TTTTTTAGAA
1 TTTTTTA-AA
7715859 TTATTTCTAGAA
1 TT-TTT-TA-AA
**
7715871 AATTTTAAA
1 TTTTTTAAA
*
7715880 -CTTTTATAA
1 TTTTTTA-AA
*
7715889 TTTTTTCAA
1 TTTTTTAAA
7715898 TTTTTTAATA
1 TTTTTTAA-A
7715908 TTT
1 TTT
7715911 CTTTTTTGGA
Statistics
Matches: 110, Mismatches: 23, Indels: 23
0.71 0.15 0.15
Matches are distributed among these distances:
7 4 0.04
8 6 0.05
9 51 0.46
10 34 0.31
11 10 0.09
12 5 0.05
ACGTcount: A:0.28, C:0.03, G:0.06, T:0.62
Consensus pattern (9 bp):
TTTTTTAAA
Found at i:7715956 original size:19 final size:18
Alignment explanation
Indices: 7715931--7715994 Score: 58
Period size: 20 Copynumber: 3.4 Consensus size: 18
7715921 TTTGTTTCAG
7715931 AAATTTTAAAATTCTTTT
1 AAATTTTAAAATTCTTTT
* *
7715949 AGAATTTTAGAATTTCATTTA
1 A-AATTTTA-AAATTC-TTTT
*
7715970 AAATTTTTAGAATT-TTTT
1 AAA-TTTTAAAATTCTTTT
7715988 AAATTTT
1 AAATTTT
7715995 TTTAGACTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
17 4 0.11
18 7 0.19
19 7 0.19
20 10 0.27
21 9 0.24
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.55
Consensus pattern (18 bp):
AAATTTTAAAATTCTTTT
Found at i:7715995 original size:19 final size:19
Alignment explanation
Indices: 7715757--7716014 Score: 88
Period size: 19 Copynumber: 13.2 Consensus size: 19
7715747 TTATTAAATT
*
7715757 TTTTTTA-AATCTTTTTGAA
1 TTTTTTAGAAT-TTTTTAAA
* *
7715776 TTTTTTTGAATTTTTTGAA
1 TTTTTTAGAATTTTTTAAA
*
7715795 --TTTTAGATTTTTTTGAAA
1 TTTTTTAGAATTTTTT-AAA
* * **
7715813 ATTTTTA-AGTTTTTT-GC
1 TTTTTTAGAATTTTTTAAA
* *
7715830 TTTTTTTGAATTTTTAAAA
1 TTTTTTAGAATTTTTTAAA
7715849 TTTTTTAGAATTATTTCTAGAA
1 TTTTTTAGAATT-TTT-TA-AA
** *
7715871 AATTTTA-AA-CTTTTATAA
1 TTTTTTAGAATTTTTTA-AA
*
7715889 TTTTTT-CAATTTTTTAATA
1 TTTTTTAGAATTTTTTAA-A
* *
7715908 TTTCTTTTTTGGATTTGTTTCAGAA
1 --T-TTTTTAGAATTT-TTT-A-AA
* *
7715933 -ATTTTAAAATTCTTTTAGAA
1 TTTTTTAGAATT-TTTTA-AA
7715953 --TTTTAGAATTTCATTTAAA
1 TTTTTTAGAATTT--TTTAAA
*
7715972 ATTTTTAGAATTTTTTAAA
1 TTTTTTAGAATTTTTTAAA
* *
7715991 TTTTTTTAGACTTTTTAAAA
1 -TTTTTTAGAATTTTTTAAA
7716011 TTTT
1 TTTT
7716015 CAAAATCTAA
Statistics
Matches: 182, Mismatches: 32, Indels: 50
0.69 0.12 0.19
Matches are distributed among these distances:
17 17 0.09
18 20 0.11
19 62 0.34
20 35 0.19
21 25 0.14
22 13 0.07
23 4 0.02
24 3 0.02
25 2 0.01
26 1 0.01
ACGTcount: A:0.29, C:0.04, G:0.07, T:0.60
Consensus pattern (19 bp):
TTTTTTAGAATTTTTTAAA
Found at i:7715998 original size:20 final size:20
Alignment explanation
Indices: 7715953--7716014 Score: 72
Period size: 20 Copynumber: 3.0 Consensus size: 20
7715943 TCTTTTAGAA
*
7715953 TTTTAGAATTTCATTTAAA-AT
1 TTTTAGAATTT--TTTAAATTT
7715974 TTTTAGAATTTTTTAAATTT
1 TTTTAGAATTTTTTAAATTT
* *
7715994 TTTTAGACTTTTTAAAATTT
1 TTTTAGAATTTTTTAAATTT
7716014 T
1 T
7716015 CAAAATCTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
19 6 0.16
20 20 0.54
21 11 0.30
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.60
Consensus pattern (20 bp):
TTTTAGAATTTTTTAAATTT
Found at i:7715998 original size:29 final size:31
Alignment explanation
Indices: 7715934--7716014 Score: 80
Period size: 29 Copynumber: 2.7 Consensus size: 31
7715924 GTTTCAGAAA
7715934 TTTTAAAATTCTTTTAGAA--TTTTAGAATTTC
1 TTTTAAAA-T-TTTTAGAATTTTTTAGAATTTC
*
7715965 ATTTAAAATTTTTAGAATTTTTTA-AATTT-
1 TTTTAAAATTTTTAGAATTTTTTAGAATTTC
* * *
7715994 TTTTAGACTTTTTAAAATTTT
1 TTTTAAAATTTTTAGAATTTT
7716015 CAAAATCTAA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
29 25 0.58
30 6 0.14
31 12 0.28
ACGTcount: A:0.33, C:0.04, G:0.05, T:0.58
Consensus pattern (31 bp):
TTTTAAAATTTTTAGAATTTTTTAGAATTTC
Found at i:7717806 original size:20 final size:22
Alignment explanation
Indices: 7717783--7717841 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 22
7717773 AAAAAAAAAC
7717783 TTCAAAAAAAATT-TAAAAG-A
1 TTCAAAAAAAATTCTAAAAGAA
*
7717803 TTC-ATAAAAATTCTAAAAGAA
1 TTCAAAAAAAATTCTAAAAGAA
* *
7717824 TT-AAAAAAACTTTTAAAA
1 TTCAAAAAAAATTCTAAAA
7717842 ATTTTTAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
19 8 0.25
20 9 0.28
21 15 0.47
ACGTcount: A:0.61, C:0.07, G:0.03, T:0.29
Consensus pattern (22 bp):
TTCAAAAAAAATTCTAAAAGAA
Found at i:7717832 original size:21 final size:19
Alignment explanation
Indices: 7717786--7717832 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
7717776 AAAAAACTTC
7717786 AAAAAAAATTTAAAAGATT
1 AAAAAAAATTTAAAAGATT
* *
7717805 CATAAAAATTCTAAAAGAATT
1 AAAAAAAATT-TAAAAG-ATT
7717826 AAAAAAA
1 AAAAAAA
7717833 CTTTTAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 8 0.36
20 6 0.27
21 8 0.36
ACGTcount: A:0.68, C:0.04, G:0.04, T:0.23
Consensus pattern (19 bp):
AAAAAAAATTTAAAAGATT
Found at i:7717840 original size:21 final size:20
Alignment explanation
Indices: 7717783--7717841 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
7717773 AAAAAAAAAC
*
7717783 TTCAAAAAAAATTTAAAAGA
1 TTCAAAAAAATTTTAAAAGA
* *
7717803 TTCATAAAAATTCTAAAAGAA
1 TTCAAAAAAATTTTAAAAG-A
7717824 TT-AAAAAAACTTTTAAAA
1 TTCAAAAAAA-TTTTAAAA
7717842 ATTTTTAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 22 0.69
21 10 0.31
ACGTcount: A:0.61, C:0.07, G:0.03, T:0.29
Consensus pattern (20 bp):
TTCAAAAAAATTTTAAAAGA
Found at i:7717959 original size:26 final size:27
Alignment explanation
Indices: 7717925--7717998 Score: 91
Period size: 26 Copynumber: 2.8 Consensus size: 27
7717915 TTATAAAAAT
*
7717925 ATTAAAAAATATTAATAT-TTTTACAA
1 ATTAAAAAATATTAAGATATTTTACAA
*
7717951 ATTAAAAAA-ATTAAGATATTTTATAA
1 ATTAAAAAATATTAAGATATTTTACAA
*
7717977 ATTCAAAAAAT-TTCAGATATTT
1 ATT-AAAAAATATTAAGATATTT
7717999 ATTAAAAATC
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
25 7 0.17
26 19 0.45
27 16 0.38
ACGTcount: A:0.53, C:0.04, G:0.03, T:0.41
Consensus pattern (27 bp):
ATTAAAAAATATTAAGATATTTTACAA
Found at i:7717969 original size:27 final size:26
Alignment explanation
Indices: 7717920--7718007 Score: 81
Period size: 26 Copynumber: 3.2 Consensus size: 26
7717910 ACAAATTATA
7717920 AAAATATTAAAAAATATTA-ATATTTTT
1 AAAA-ATTAAAAAA-ATTAGATATTTTT
*
7717947 ACAAATTAAAAAAATTAAGATA-TTTT
1 AAAAATTAAAAAAATT-AGATATTTTT
* *
7717973 ATAAATTCAAAAAATTTCAGATATTTATT
1 AAAAATT-AAAAAAATT-AGATATTT-TT
7718002 AAAAAT
1 AAAAAT
7718008 CCAAAAAGTT
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
25 3 0.06
26 20 0.39
27 19 0.37
28 2 0.04
29 7 0.14
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (26 bp):
AAAAATTAAAAAAATTAGATATTTTT
Found at i:7718385 original size:21 final size:19
Alignment explanation
Indices: 7718361--7718425 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 19
7718351 TTTTTGAAAA
7718361 TTTTAAAAAATCTTTCACAAT
1 TTTTAAAAAATCTTT-A-AAT
*
7718382 TTTTAAAAAA-CTTTAGATT
1 TTTTAAAAAATCTTTA-AAT
*
7718401 TTTTCAAAAAATTTTTAAAT
1 TTTT-AAAAAATCTTTAAAT
7718421 TTTTA
1 TTTTA
7718426 TTTTAAATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
19 8 0.21
20 16 0.42
21 14 0.37
ACGTcount: A:0.42, C:0.08, G:0.02, T:0.49
Consensus pattern (19 bp):
TTTTAAAAAATCTTTAAAT
Found at i:7718423 original size:20 final size:20
Alignment explanation
Indices: 7718361--7718425 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 20
7718351 TTTTTGAAAA
*
7718361 TTTTAAAAAATCTTTCACAAT
1 TTTTAAAAAAT-TTTTACAAT
* * *
7718382 TTTTAAAAAA-CTTTAGATT
1 TTTTAAAAAATTTTTACAAT
7718401 TTTTCAAAAAATTTTTA-AAT
1 TTTT-AAAAAATTTTTACAAT
7718421 TTTTA
1 TTTTA
7718426 TTTTAAATAT
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
19 10 0.28
20 12 0.33
21 14 0.39
ACGTcount: A:0.42, C:0.08, G:0.02, T:0.49
Consensus pattern (20 bp):
TTTTAAAAAATTTTTACAAT
Found at i:7724342 original size:59 final size:58
Alignment explanation
Indices: 7724241--7724357 Score: 146
Period size: 59 Copynumber: 2.0 Consensus size: 58
7724231 ATCGTCCATT
* * *
7724241 ATTTGACTTTTTTCCTCCTTGACACATGTAGAATGCAATACATATTGTCAACATTCATC
1 ATTTGACTTTTCTCCTCCTTGACACATATAGAA-GCAATACATATTATCAACATTCATC
* * *
7724300 ATTTGACTTTTCTCTTTCTTGACACATATAGAA-CATATTACATATTATTAACATTCAT
1 ATTTGACTTTTCTCCTCCTTGACACATATAGAAGCA-A-TACATATTATCAACATTCAT
7724358 ATGTTATGTA
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
57 2 0.04
58 1 0.02
59 47 0.94
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.42
Consensus pattern (58 bp):
ATTTGACTTTTCTCCTCCTTGACACATATAGAAGCAATACATATTATCAACATTCATC
Found at i:7730392 original size:22 final size:22
Alignment explanation
Indices: 7730351--7730394 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
7730341 TTATAATTAA
7730351 ATATATATTTAAACAAAAATTT
1 ATATATATTTAAACAAAAATTT
7730373 ATATAT-TTTCAAA-AATAAATTT
1 ATATATATTT-AAACAA-AAATTT
7730395 TCAAGAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (22 bp):
ATATATATTTAAACAAAAATTT
Found at i:7735518 original size:35 final size:35
Alignment explanation
Indices: 7735468--7735537 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
7735458 ATATATAAAC
* *
7735468 CAAATATTTTTTGGGCATAAATATACAACTGACTT
1 CAAATATTTTCTGGGCAAAAATATACAACTGACTT
* *
7735503 CAAATATTTTCTGGGCAAAAATCTACAATTGACTT
1 CAAATATTTTCTGGGCAAAAATATACAACTGACTT
7735538 GACATATGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.36
Consensus pattern (35 bp):
CAAATATTTTCTGGGCAAAAATATACAACTGACTT
Found at i:7737313 original size:18 final size:18
Alignment explanation
Indices: 7737286--7737322 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7737276 ATAATATTAG
*
7737286 AATAAAAAAATTAAAATT
1 AATAAAAAAAATAAAATT
*
7737304 AATAATAAAAATAAAATT
1 AATAAAAAAAATAAAATT
7737322 A
1 A
7737323 TTTATTAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (18 bp):
AATAAAAAAAATAAAATT
Found at i:7737329 original size:25 final size:25
Alignment explanation
Indices: 7737301--7737382 Score: 96
Period size: 24 Copynumber: 3.2 Consensus size: 25
7737291 AAAAATTAAA
7737301 ATTAATAATAAAAATAAAATTATTT
1 ATTAATAATAAAAATAAAATTATTT
* *
7737326 ATTAATTAT-ATAATAAAATT-TATT
1 ATTAATAATAAAAATAAAATTAT-TT
*
7737350 ATATAAAAATAAAAATAAAAATTATTT
1 AT-TAATAATAAAAAT-AAAATTATTT
7737377 ATTAAT
1 ATTAAT
7737383 TTATTATATG
Statistics
Matches: 46, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
23 1 0.02
24 14 0.30
25 13 0.28
26 7 0.15
27 10 0.22
28 1 0.02
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (25 bp):
ATTAATAATAAAAATAAAATTATTT
Found at i:7737364 original size:21 final size:20
Alignment explanation
Indices: 7737291--7737365 Score: 64
Period size: 21 Copynumber: 3.6 Consensus size: 20
7737281 ATTAGAATAA
* *
7737291 AAAAATTAAAA-TTAATAAT
1 AAAAATAAAAATTTATTAAT
7737310 AAAAATAAAATTATTTATTAATT
1 AAAAATAAAA--ATTTATTAA-T
*
7737333 ATATAAT-AAAATTTATTATAT
1 A-AAAATAAAAATTTATTA-AT
7737354 AAAAATAAAAAT
1 AAAAATAAAAAT
7737366 AAAAATTATT
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
19 9 0.20
20 4 0.09
21 16 0.36
22 7 0.16
23 5 0.11
24 4 0.09
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
AAAAATAAAAATTTATTAAT
Found at i:7738050 original size:14 final size:14
Alignment explanation
Indices: 7738031--7738073 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
7738021 TTATTAATTT
7738031 AATTTAATAAATAA
1 AATTTAATAAATAA
* *
7738045 AATTTATTATATAA
1 AATTTAATAAATAA
* *
7738059 AAATAAATAAATAA
1 AATTTAATAAATAA
7738073 A
1 A
7738074 TAAAATATTA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (14 bp):
AATTTAATAAATAA
Found at i:7738813 original size:29 final size:31
Alignment explanation
Indices: 7738763--7738845 Score: 118
Period size: 30 Copynumber: 2.8 Consensus size: 31
7738753 AATTCATAAA
*
7738763 TTTATAATTTAAATATTGTATTAAA-ATTTT
1 TTTATAATTTAAATATTATATTAAATATTTT
7738793 TTTA-AATTTAAATATTATATTAAATATTTT
1 TTTATAATTTAAATATTATATTAAATATTTT
* *
7738823 ATTATAATTTAAA-AATATATTAA
1 TTTATAATTTAAATATTATATTAA
7738846 CCAAAATATT
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
29 19 0.40
30 21 0.44
31 8 0.17
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (31 bp):
TTTATAATTTAAATATTATATTAAATATTTT
Found at i:7739038 original size:31 final size:29
Alignment explanation
Indices: 7739003--7739061 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
7738993 AAATTTGACA
7739003 ATTTATATCATTATATCATATAAAATATTAT
1 ATTTATATCA-TATATCATATAAAA-ATTAT
* *
7739034 ATTTATATCATATGTTATATAAAAATTA
1 ATTTATATCATATATCATATAAAAATTA
7739062 CGTGTCATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 4 0.15
30 12 0.46
31 10 0.38
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.47
Consensus pattern (29 bp):
ATTTATATCATATATCATATAAAAATTAT
Found at i:7739460 original size:19 final size:18
Alignment explanation
Indices: 7739426--7739464 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
7739416 TTTAATAATT
7739426 TAAAATCAATATAAAAAA
1 TAAAATCAATATAAAAAA
7739444 TAAAATTCAAT-TAAAAAA
1 TAAAA-TCAATATAAAAAA
7739462 TAA
1 TAA
7739465 TTTAAACAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (18 bp):
TAAAATCAATATAAAAAA
Found at i:7739865 original size:15 final size:15
Alignment explanation
Indices: 7739845--7739874 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7739835 TCTTCAAATG
*
7739845 AGTTAAATAAATAAA
1 AGTTAAAGAAATAAA
7739860 AGTTAAAGAAATAAA
1 AGTTAAAGAAATAAA
7739875 GATAAATTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.00, G:0.10, T:0.23
Consensus pattern (15 bp):
AGTTAAAGAAATAAA
Found at i:7740839 original size:385 final size:382
Alignment explanation
Indices: 7740332--7741062 Score: 887
Period size: 385 Copynumber: 1.9 Consensus size: 382
7740322 GATGACAATG
* * * * * *
7740332 ACATTATTTAATCTAATCTTATTCGTAATATTATCTTATCCTATCATATTATAATATTATATACC
1 ACATTATTAAATATAATCTTATTCATAATATCATCTTATCCTATCATATCATAATATTATATACA
* *
7740397 AAGCATGAGCTTAGGTAATATTTGGTACATAAGATAATGAATAAGATAGGATGATAATCATCCTA
66 AAGCAT--GCTTAGGTAATATTTGGTACATAAGATAACGAATAAGATAGAATGATAATCATCCTA
* *
7740462 TATTATGTTTGGTTTGTATCTAAAGAAAAT-GATAGGATTAGAAGGATGATTAATCATCCTCTAG
129 TATTATGTTTGGTTTGTAT-TAAA-AAAATGGATAGAATTAGAAAGATGATTAAT-ATCCTCTAG
* * * *
7740526 GTATAAGATGATTCAATCTTTCTAAGAGAAAATGATTATT-TTTTTAATTCATAAAATTGCACTT
191 GTATAAGATGATTCAATCTTTCCAA-AGAAAA-GATAATTATTTTTAATCCATAAAATTGAACTT
* *
7740590 ACATGACCTATTATACATTTAAAAATTACATCGATGATTTAAATTATATAAACTTT-AA-GGATA
254 ACATGACCTATTATACATTTAAAAATTACATCAATAATTTAAATTATATAAACTTTAAAGGGATA
* *
7740653 ATTTTGATCAATAAAGAAATTATCATGTCATAATCCTTGTACACATAAAAAACATGATAGGATA
319 ACTTTGATCAATAAAGAAAGTATCATGTCATAATCCTTGTACACATAAAAAACATGATAGGATA
* * * *
7740717 ACATTATTAAATATAATTTTATTCATAATATCATCTTATTCTATCTTATCATAATCTTATATACT
1 ACATTATTAAATATAATCTTATTCATAATATCATCTTATCCTATCATATCATAATATTATATAC-
* * * * * *
7740782 AAACGCAT-CTTTAGGTCATATTTGGTACATAGGATGACGGATAAGATAGAATGATAATTATCTT
65 AAA-GCATGC-TTAGGTAATATTTGGTACATAAGATAACGAATAAGATAGAATGATAATCATCCT
* * * * * **
7740846 ATATTATGTTTGGTTTGTATTTAAATAATGGATAGAATTATAAAGATGATTAATATTCTTTTTGT
128 ATATTATGTTTGGTTTGTATTAAAAAAATGGATAGAATTAGAAAGATGATTAATATCCTCTAGGT
* * * **
7740911 ATAAGATGATTTAATCTTTCCAAAGTAGAGATAATTATTTTTAATCCATAGGATTGAACTTACAT
193 ATAAGATGATTCAATCTTTCCAAAGAAAAGATAATTATTTTTAATCCATAAAATTGAACTTACAT
**** * * *
7740976 TTTTTATTATACTTTTAAAAATTACATCAATAATTTAAATTGTTTAAACTTTGAAAAGGGATAAC
258 GACCTATTATACATTTAAAAATTACATCAATAATTTAAATTATATAAACTTT--AAAGGGATAAC
*
7741041 TTTGATCAATAAATAAAGTATC
321 TTTGATCAATAAAGAAAGTATC
7741063 TTATTTTAAT
Statistics
Matches: 289, Mismatches: 48, Indels: 17
0.82 0.14 0.05
Matches are distributed among these distances:
381 6 0.02
382 71 0.25
383 32 0.11
384 25 0.09
385 123 0.43
386 28 0.10
387 4 0.01
ACGTcount: A:0.39, C:0.10, G:0.11, T:0.40
Consensus pattern (382 bp):
ACATTATTAAATATAATCTTATTCATAATATCATCTTATCCTATCATATCATAATATTATATACA
AAGCATGCTTAGGTAATATTTGGTACATAAGATAACGAATAAGATAGAATGATAATCATCCTATA
TTATGTTTGGTTTGTATTAAAAAAATGGATAGAATTAGAAAGATGATTAATATCCTCTAGGTATA
AGATGATTCAATCTTTCCAAAGAAAAGATAATTATTTTTAATCCATAAAATTGAACTTACATGAC
CTATTATACATTTAAAAATTACATCAATAATTTAAATTATATAAACTTTAAAGGGATAACTTTGA
TCAATAAAGAAAGTATCATGTCATAATCCTTGTACACATAAAAAACATGATAGGATA
Found at i:7741244 original size:386 final size:383
Alignment explanation
Indices: 7740017--7741461 Score: 1093
Period size: 386 Copynumber: 3.7 Consensus size: 383
7740007 AGATTTTTAA
* * * * * * * *
7740017 GTCATGTTTGATGCATAAAATTATTGATAGGATAA-GATGATAATCATTTTATATCATGTTTGAT
1 GTCATATTTGATACATAAAATGATGGATAAGA-AAGGATGATAATCA-TCTATATTATGTTTGGT
* * * * * *
7740081 TTGTATCTAAAGAGA-GGAATAATGATTGTAAGGAGGATTAAT-ATTCTTTTAGTATAAGATTAT
64 TTGTATTTAAA-AAATGG-ATAAT-ATTATAAAGAGGATTAATCATTCTTTTTGTATAAGATGAT
* * * * * * * * * *
7740144 TGAAT-TCTCCTCAAGTGGAGATAATTATTTTTAATCTAT-GAGATTAAATTTACATGTGCAACT
126 TCAATCTTTCC-AAAGTAGAGATAATTATTTTTAATCCATAG-GATTGAACTTACATGTCCTATT
* * * * *
7740207 ATACTTTTAAAAATTATATCAATAATTTAAATTGTATAAACTTTGAGGAATGATAATTTTAACAA
189 ATACTTTTAAAAATTACATCAATAATTTAAATTGTATAAACTTTGA-AAAGGATAATTTGATC-A
* * *
7740272 ATAAATAAATTATCCTATTCTAATCTTTA-CATACATCAAATACAAAATAAGATGACAATGACAT
252 ATAAATAAATTATCATATTATAATCTTTATCAT--ATCAAATACAAGATAAGATG---AT---AT
* * * *
7740336 TATTTAATCTAATCTTATTCG-TAATATTATCTTATCCTAT-CATATTATAATATTATATACCAA
309 TATTTAATATAATCTTATT-GATAATATCATCTTATTCTATCCA-ATCATAATATTATATACCAA
* * *
7740399 GCATGA-GCTTAG
372 ACA-CATCCTTAG
* * * * * *
7740411 GTAATATTTGGTACATAAGATAATGAATAAGATAGGATGATAATCATCCTATATTATGTTTGGTT
1 GTCATATTTGATACATAAAATGATGGATAAGAAAGGATGATAATCAT-CTATATTATGTTTGGTT
* ** * * * * * **
7740476 TGTATCTAAAGAAAAT-GATAGGATTAGAAGGATGATTAATCATCCTCTAGGTATAAGATGATTC
65 TGTAT-TTAA-AAAATGGATAATATTATAAAGAGGATTAATCATTCTTTTTGTATAAGATGATTC
* * * * * ** * *
7740540 AATCTTTCTAAGAGAAAATGATTATT-TTTTTAATTCATAAAATTGCACTTACATGACCTATTAT
128 AATCTTTCCAA-AGTAGA-GATAATTATTTTTAATCCATAGGATTGAACTTACATGTCCTATTAT
* * * *
7740604 ACATTTAAAAATTACATCGATGATTTAAATTATATAAACTTT---AAGGATAATTTTGATCAATA
191 ACTTTTAAAAATTACATCAATAATTTAAATTGTATAAACTTTGAAAAGGATAA-TTTGATCAATA
* * * * * * * * * * *
7740666 AAGAAATTATCATGTCATAATCCTTGTA-CACATAAAAAACATGATAGGATAACATTATTAAATA
255 AATAAATTATCATATTATAAT-CTT-TATCATATCAAATACAAGATAAGATGATATTATTTAATA
* * ** * * * *
7740730 TAATTTTATTCATAATATCATCTTATTCTATCTTATCATAATCTTATATACTAAACGCATCTTTA
318 TAATCTTATTGATAATATCATCTTATTCTATCCAATCATAATATTATATACCAAACACATCCTTA
7740795 G
383 G
* ** * * * *
7740796 GTCATATTTGGTACATAGGATGACGGATAAGATAGAATGATAATTATCTTATATTATGTTTGGTT
1 GTCATATTTGATACATAAAATGATGGATAAGAAAGGATGATAATCATC-TATATTATGTTTGGTT
* * *
7740861 TGTATTTAAATAATGGATAGA-ATTATAAAGATGATTAAT-ATTCTTTTTGTATAAGATGATTTA
65 TGTATTTAAAAAATGGATA-ATATTATAAAGAGGATTAATCATTCTTTTTGTATAAGATGATTCA
* **
7740924 ATCTTTCCAAAGTAGAGATAATTATTTTTAATCCATAGGATTGAACTTACATTTTTTATTATACT
129 ATCTTTCCAAAGTAGAGATAATTATTTTTAATCCATAGGATTGAACTTACATGTCCTATTATACT
*
7740989 TTTAAAAATTACATCAATAATTTAAATTGTTTAAACTTTGAAAAGGGATAACTTTGATCAATAAA
194 TTTAAAAATTACATCAATAATTTAAATTGTATAAACTTTGAAAA-GGATAA-TTTGATCAATAAA
* * * * *
7741054 TAAAGTATCTTATTTTAATTTTTATGCATATCAAATACAAGATAAGATGATATTATTTAATTTAA
257 TAAATTATCATATTATAATCTTTAT-CATATCAAATACAAGATAAGATGATATTATTTAATATAA
* * * ***
7741119 TCTTATTGATAATATCATTTTATTTTATCCAATCATAATTTTGCGTACCAAACACATCCTTAG
321 TCTTATTGATAATATCATCTTATTCTATCCAATCATAATATTATATACCAAACACATCCTTAG
* * * *
7741182 ATCATGTTTGATGCATAAAATGATGGA-AAGAAAAGGATGATAATTATGCTATATTATGTTTGGT
1 GTCATATTTGATACATAAAATGATGGATAAG-AAAGGATGATAATCAT-CTATATTATGTTTGGT
* * ** *
7741246 TTATATATAAAGCAAA-GGATAATATTGCAAAGAGGTTTAATCA-TCTTCTTTGTATAAGATGAT
64 TTGTATTTAAA--AAATGGATAATATTATAAAGAGGATTAATCATTCTT-TTTGTATAAGATGAT
* * * * * *
7741309 TCAATCATCTT-C-AAGT-GAAGAGAATTATTTTTAATCCATAGGATTGAATTTATATATCTTGT
126 TCAATC-T-TTCCAAAGTAG-AGATAATTATTTTTAATCCATAGGATTGAACTTACATGTCCTAT
* * * * * * *
7741371 TATA-TCCTTAAAAATTACATTAATAATTTGAATTGTATAAATTTTGAAGAAGCATAATTTTAAC
188 TATACT-TTTAAAAATTACATCAATAATTTAAATTGTATAAACTTTGAA-AAGGATAATTTGATC
* * *
7741435 TAATAAACAAATTATTATATCATAATC
251 -AATAAATAAATTATCATATTATAATC
7741462 CTTGTACACA
Statistics
Matches: 828, Mismatches: 184, Indels: 84
0.76 0.17 0.08
Matches are distributed among these distances:
381 6 0.01
382 71 0.09
383 32 0.04
384 27 0.03
385 125 0.15
386 171 0.21
387 31 0.04
388 131 0.16
389 4 0.00
390 2 0.00
391 41 0.05
392 8 0.01
393 21 0.03
394 77 0.09
395 74 0.09
396 7 0.01
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.40
Consensus pattern (383 bp):
GTCATATTTGATACATAAAATGATGGATAAGAAAGGATGATAATCATCTATATTATGTTTGGTTT
GTATTTAAAAAATGGATAATATTATAAAGAGGATTAATCATTCTTTTTGTATAAGATGATTCAAT
CTTTCCAAAGTAGAGATAATTATTTTTAATCCATAGGATTGAACTTACATGTCCTATTATACTTT
TAAAAATTACATCAATAATTTAAATTGTATAAACTTTGAAAAGGATAATTTGATCAATAAATAAA
TTATCATATTATAATCTTTATCATATCAAATACAAGATAAGATGATATTATTTAATATAATCTTA
TTGATAATATCATCTTATTCTATCCAATCATAATATTATATACCAAACACATCCTTAG
Found at i:7741502 original size:388 final size:383
Alignment explanation
Indices: 7740113--7741520 Score: 1034
Period size: 388 Copynumber: 3.6 Consensus size: 383
7740103 TGATTGTAAG
* * * * * * *
7740113 GAGGATTAATATTCTTTTAGTATAAGATTATTGAAT-TCTCCTCAAGTGGAGATAATTATTTTTA
1 GAGGATTAATATTCTTTTTGTATAAGATGATTCAATCTTTCC-AAAGTAGAGAGAATTATTTTTA
* * * * * * * *
7740177 ATCTAT-GAGATTAAATTTACATGTGC-AACTATACTTTTAAAAATTATATCAATAATTTAAATT
65 ATCCATAG-GATTGAACTTACATAT-CTTATTATACTCTTAAAAATTACATCAATAATTTAAATT
* * *
7740240 GTATAAACTTTGAGGAATGATAATTTT-AACAAATAAATAAATTATCCTAT-TC-TAAT-CTT-T
128 GTATAAACTTTGAAGAA-GATAATTTTGATC-AATAAACAAATTAT--TATATCATAATCCTTGT
* * * * *
7740300 ACATACATCAAATACAAAATAAGATGACAATGACATTATTTAATCTAATCTTATTCGTAATATTA
189 AC--ACATAAAATACAAGATAA-AT---AA--A-ATTATTTAATTTAAT-TTATTCATAATATCA
* * * * * * * * * *
7740365 TCTTATCCTAT-CATATTATAATATTATATACCAAGCATGA-GCTTAGGTAATATTTGGTACATA
244 TCTTATTCTATCCA-ATCATAATCTTACATACCAAACA-CATCCTTAGATCATATTTGATACATA
* * * * * * * * * * * *
7740428 AGATAATGAATAAGATAGGATGATAATCATCCTATATTATGTTTGGTTTGTATCTAAAGAAAATG
307 AAATGACGGATAAGAAAGAATGATAATTATCTTATATTATGTTTGGTTTATATATAAA-CAAAGG
* * *
7740493 ATAGGATTAGAAG
371 ATAGAATTACAAA
* * * ** * * * **
7740506 GATGATTAATCATCCTCTAGGTATAAGATGATTCAATCTTTCTAAGAGAAAATGATTATT-TTTT
1 GAGGATTAAT-ATTCTTTTTGTATAAGATGATTCAATCTTTCCAA-AGTAGA-GAGAATTATTTT
* ** * * * *
7740570 TAATTCATAAAATTGCACTTACATGA-CCTATTATACAT-TTAAAAATTACATCGATGATTTAAA
63 TAATCCATAGGATTGAACTTACAT-ATCTTATTATAC-TCTTAAAAATTACATCAATAATTTAAA
* * * *
7740633 TTATATAAACTTT-AAG--GATAATTTTGATCAATAAAGAAATTATCATGTCATAATCCTTGTAC
126 TTGTATAAACTTTGAAGAAGATAATTTTGATCAATAAACAAATTATTATATCATAATCCTTGTAC
* * * * * *
7740695 ACATAAAAAACATGATAGGATAACATTATTAAATATAATTTTATTCATAATATCATCTTATTCTA
191 ACATAAAATACAAGATA-AATAAAATTATTTAATTTAA-TTTATTCATAATATCATCTTATTCTA
** * * * * * * **
7740760 TCTTATCATAATCTTATATACTAAACGCATCTTTAGGTCATATTTGGTACATAGGATGACGGATA
254 TCCAATCATAATCTTACATACCAAACACATCCTTAGATCATATTTGATACATAAAATGACGGATA
* * * * * *
7740825 AGATAGAATGATAATTATCTTATATTATGTTTGGTTTGTATTTAAATAATGGATAGAATTATAAA
319 AGAAAGAATGATAATTATCTTATATTATGTTTGGTTTATATATAAACAAAGGATAGAATTACAAA
* * *
7740890 GATGATTAATATTCTTTTTGTATAAGATGATTTAATCTTTCCAAAGTAGAGATAATTATTTTTAA
1 GAGGATTAATATTCTTTTTGTATAAGATGATTCAATCTTTCCAAAGTAGAGAGAATTATTTTTAA
* * * *
7740955 TCCATAGGATTGAACTTACATTTTTTATTATACTTTTAAAAATTACATCAATAATTTAAATTGTT
66 TCCATAGGATTGAACTTACATATCTTATTATACTCTTAAAAATTACATCAATAATTTAAATTGTA
* * * ** ** * * *
7741020 TAAACTTTGAA-AAGGGATAACTTTGATCAATAAATAAAGTATCT-TATTTTAATTTTTATGCAT
131 TAAACTTTGAAGAA--GATAATTTTGATCAATAAACAAATTAT-TATATCATAATCCTTGTACAC
* * * * * *
7741083 ATCAAATACAAGATAAGATGATATTATTTAATTTAATCTTATTGATAATATCATTTTATTTTATC
193 ATAAAATACAAGATAA-ATAAAATTATTTAATTTAAT-TTATTCATAATATCATCTTATTCTATC
* * * * * *
7741148 CAATCATAATTTTGCGTACCAAACACATCCTTAGATCATGTTTGATGCATAAAATGATGGA-AAG
256 CAATCATAATCTTACATACCAAACACATCCTTAGATCATATTTGATACATAAAATGACGGATAAG
* *
7741212 AAAAGGATGATAATTATGC-TATATTATGTTTGGTTTATATATAAAGCAAAGGATA-ATATTGCA
321 -AAAGAATGATAATTAT-CTTATATTATGTTTGGTTTATATATAAA-CAAAGGATAGA-ATTACA
7741275 AA
382 AA
*
7741277 GAGGTTTAATCA-TCTTCTTTGTATAAGATGATTCAATCATCTT-C-AAGT-GAAGAGAATTATT
1 GAGGATTAAT-ATTCTT-TTTGTATAAGATGATTCAATC-T-TTCCAAAGTAG-AGAGAATTATT
* * * * *
7741338 TTTAATCCATAGGATTGAATTTATATATCTTGTTATA-TCCTTAAAAATTACATTAATAATTTGA
61 TTTAATCCATAGGATTGAACTTACATATCTTATTATACT-CTTAAAAATTACATCAATAATTTAA
* *
7741402 ATTGTATAAATTTTGAAGAAGCATAATTTT-AACTAATAAACAAATTATTATATCATAATCCTTG
125 ATTGTATAAACTTTGAAGAAG-ATAATTTTGATC-AATAAACAAATTATTATATCATAATCCTTG
*
7741466 TACACATAAAATATAAGATATAATAAAATTATTTAATTTAATTCTATTCATAATA
188 TACACATAAAATACAAGATA-AATAAAATTATTTAATTTAATT-TATTCATAATA
7741521 AATTTGTATA
Statistics
Matches: 806, Mismatches: 165, Indels: 93
0.76 0.16 0.09
Matches are distributed among these distances:
381 7 0.01
382 70 0.09
383 30 0.04
384 24 0.03
385 127 0.16
386 171 0.21
387 33 0.04
388 178 0.22
389 7 0.01
390 4 0.00
391 41 0.05
392 5 0.01
393 12 0.01
394 24 0.03
395 66 0.08
396 7 0.01
ACGTcount: A:0.40, C:0.10, G:0.11, T:0.40
Consensus pattern (383 bp):
GAGGATTAATATTCTTTTTGTATAAGATGATTCAATCTTTCCAAAGTAGAGAGAATTATTTTTAA
TCCATAGGATTGAACTTACATATCTTATTATACTCTTAAAAATTACATCAATAATTTAAATTGTA
TAAACTTTGAAGAAGATAATTTTGATCAATAAACAAATTATTATATCATAATCCTTGTACACATA
AAATACAAGATAAATAAAATTATTTAATTTAATTTATTCATAATATCATCTTATTCTATCCAATC
ATAATCTTACATACCAAACACATCCTTAGATCATATTTGATACATAAAATGACGGATAAGAAAGA
ATGATAATTATCTTATATTATGTTTGGTTTATATATAAACAAAGGATAGAATTACAAA
Found at i:7742051 original size:2 final size:2
Alignment explanation
Indices: 7742044--7742133 Score: 92
Period size: 2 Copynumber: 45.0 Consensus size: 2
7742034 CAAATGAAGC
* * * *
7742044 TA TA TA TA TA TA TA TA AA CA TA TA TA TA TA TA TA CA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * **
7742086 TA TA TA TA CA TA -A GTA TA TA TA TA TG TA CG TA TA TA TA TA TA
1 TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7742128 TA TA TA
1 TA TA TA
7742134 ATTGGATTCT
Statistics
Matches: 71, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
1 1 0.01
2 69 0.97
3 1 0.01
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.43
Consensus pattern (2 bp):
TA
Found at i:7742068 original size:16 final size:16
Alignment explanation
Indices: 7742047--7742129 Score: 103
Period size: 16 Copynumber: 4.9 Consensus size: 16
7742037 ATGAAGCTAT
*
7742047 ATATATATATATAAAC
1 ATATATATATATATAC
7742063 ATATATATATATATAC
1 ATATATATATATATAC
*
7742079 ATGTATATATATATAC
1 ATATATATATATATAC
7742095 ATAAGTATATATATATGTAC
1 AT-A-TATATATATA--TAC
*
7742115 GTATATATATATATA
1 ATATATATATATATA
7742130 TATAATTGGA
Statistics
Matches: 59, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
16 34 0.58
18 20 0.34
19 1 0.02
20 4 0.07
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.42
Consensus pattern (16 bp):
ATATATATATATATAC
Found at i:7752179 original size:30 final size:30
Alignment explanation
Indices: 7752124--7752185 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
7752114 TTTGAAATAT
* *
7752124 AAATAATTGAATATTTATAATATTAATAAA
1 AAATAATTCAATATTTATAATATTAAGAAA
7752154 AAATAATTCAAT-TTTATTACA-ATTAAGAAA
1 AAATAATTCAATATTTA-TA-ATATTAAGAAA
7752184 AA
1 AA
7752186 TATTTTTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 4 0.14
30 23 0.82
31 1 0.04
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.37
Consensus pattern (30 bp):
AAATAATTCAATATTTATAATATTAAGAAA
Found at i:7760135 original size:14 final size:14
Alignment explanation
Indices: 7760116--7760143 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7760106 TGCCCCCACC
7760116 ATAGCTATTACTCT
1 ATAGCTATTACTCT
7760130 ATAGCTATTACTCT
1 ATAGCTATTACTCT
7760144 TATCCAACTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (14 bp):
ATAGCTATTACTCT
Found at i:7760574 original size:21 final size:21
Alignment explanation
Indices: 7760549--7760589 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7760539 TCTTTAACAG
7760549 AAAAATTCAGAAA-AATTTTTA
1 AAAAATT-AGAAATAATTTTTA
*
7760570 AAAAATTTGAAATAATTTTT
1 AAAAATTAGAAATAATTTTT
7760590 TTTTTAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.54, C:0.02, G:0.05, T:0.39
Consensus pattern (21 bp):
AAAAATTAGAAATAATTTTTA
Found at i:7760785 original size:50 final size:50
Alignment explanation
Indices: 7760713--7760819 Score: 127
Period size: 50 Copynumber: 2.2 Consensus size: 50
7760703 TCTGAAATTT
*
7760713 TTTTA-AAAAATCTAACAAATTTTCAAA-TATTCT-AAAACAATTTCAAAAAA
1 TTTTAGAAAAATCTAACAAATTTT-AAAGAATTCTGAAAA-AATTT-AAAAAA
7760763 TTTTAGAAAAA-CTTAA-AAATTTTAAAGAATTCTGAAAAAATTTAAAAAA
1 TTTTAGAAAAATC-TAACAAATTTTAAAGAATTCTGAAAAAATTTAAAAAA
7760812 -TTTAGAAA
1 TTTTAGAAA
7760820 CTTTTAAAAA
Statistics
Matches: 52, Mismatches: 1, Indels: 10
0.83 0.02 0.16
Matches are distributed among these distances:
48 8 0.15
49 9 0.17
50 23 0.44
51 12 0.23
ACGTcount: A:0.55, C:0.07, G:0.04, T:0.34
Consensus pattern (50 bp):
TTTTAGAAAAATCTAACAAATTTTAAAGAATTCTGAAAAAATTTAAAAAA
Found at i:7760793 original size:29 final size:28
Alignment explanation
Indices: 7760758--7760876 Score: 91
Period size: 29 Copynumber: 4.2 Consensus size: 28
7760748 AACAATTTCA
*
7760758 AAAAATTTTAGAAAAACTTAAAAATTTT
1 AAAAATTTTAGAAAAATTTAAAAATTTT
* *
7760786 AAAGAATTCT-GAAAAAATTTAAAAAATTT
1 AAA-AATTTTAG-AAAAATTTAAAAATTTT
* **
7760815 AGAAACTTTTA-AAAAATTTAAAAA-AAT
1 A-AAAATTTTAGAAAAATTTAAAAATTTT
* * *
7760842 ATAAAATTTCTAGAAAATTTTAAAAACTTC
1 A-AAAATTT-TAGAAAAATTTAAAAATTTT
7760872 AAAAA
1 AAAAA
7760877 GAATTAAGGA
Statistics
Matches: 71, Mismatches: 13, Indels: 13
0.73 0.13 0.13
Matches are distributed among these distances:
27 8 0.11
28 19 0.27
29 41 0.58
30 3 0.04
ACGTcount: A:0.59, C:0.05, G:0.04, T:0.32
Consensus pattern (28 bp):
AAAAATTTTAGAAAAATTTAAAAATTTT
Found at i:7760839 original size:38 final size:38
Alignment explanation
Indices: 7760717--7760910 Score: 135
Period size: 38 Copynumber: 5.0 Consensus size: 38
7760707 AAATTTTTTT
* * ** *
7760717 AAAAAATCTAACAAATTTTCAAATATTCTAAAACAATTTCA
1 AAAAAATTTAAAAAATTTAGAAA-ATTTTAAAA-AATTT-A
* * * *
7760758 AAAAATTTTAGAAAAACTTA-AAAATTTTAAAGAATTCTG
1 AAAAAATTTA-AAAAATTTAGAAAATTTTAAAAAATT-TA
*
7760797 AAAAAATTTAAAAAATTTAGAAACTTTTAAAAAATTTA
1 AAAAAATTTAAAAAATTTAGAAAATTTTAAAAAATTTA
* * * *
7760835 AAAAAATAT-AAAATTTCTAGAAAATTTTAAAAACTTCA
1 AAAAAATTTAAAAAATT-TAGAAAATTTTAAAAAATTTA
* *
7760873 AAAAGAA-TTAAGGAAATTTA-AAAGATTTCAAAAAATTT
1 AAAA-AATTTAA-AAAATTTAGAAA-ATTTTAAAAAATTT
7760911 CCAAATTTTA
Statistics
Matches: 121, Mismatches: 24, Indels: 18
0.74 0.15 0.11
Matches are distributed among these distances:
37 6 0.05
38 43 0.36
39 43 0.36
40 12 0.10
41 11 0.09
42 6 0.05
ACGTcount: A:0.57, C:0.07, G:0.05, T:0.32
Consensus pattern (38 bp):
AAAAAATTTAAAAAATTTAGAAAATTTTAAAAAATTTA
Found at i:7760858 original size:28 final size:28
Alignment explanation
Indices: 7760797--7760867 Score: 83
Period size: 28 Copynumber: 2.5 Consensus size: 28
7760787 AAGAATTCTG
*
7760797 AAAAAATTTAAAAAATTTAGAAACTTTT
1 AAAAAATTTAAAAAATATAGAAACTTTT
7760825 AAAAAATTTAAAAAAATATA-AAA-TTTCT
1 AAAAAATTT-AAAAAATATAGAAACTTT-T
* *
7760853 AGAAAATTTTAAAAA
1 AAAAAATTTAAAAAA
7760868 CTTCAAAAAG
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
27 8 0.21
28 21 0.55
29 9 0.24
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (28 bp):
AAAAAATTTAAAAAATATAGAAACTTTT
Found at i:7760865 original size:19 final size:18
Alignment explanation
Indices: 7760751--7760924 Score: 84
Period size: 19 Copynumber: 9.1 Consensus size: 18
7760741 ATTCTAAAAC
7760751 AATTTCAAAAAATTTTAGAAA
1 AATTT-AAAAAATTTT--AAA
*
7760772 AACTT-AAAAATTTTAAA
1 AATTTAAAAAATTTTAAA
*
7760789 GAATTCTGAAAAAATTTAAAA
1 -AATT-T-AAAAAATTTTAAA
* *
7760810 AATTTAGAAACTTTTAAAA
1 AATTTAAAAAATTTT-AAA
* *
7760829 AATTTAAAAAAATATAAA
1 AATTTAAAAAATTTTAAA
* *
7760847 ATTTCTAGAAAATTTTAAA
1 AATT-TAAAAAATTTTAAA
* *
7760866 AACTTCAAAAAGA-ATTAAGGA
1 AA-TTTAAAAA-ATTTTAA--A
* *
7760887 AATTTAAAAGATTTCAAAA
1 AATTTAAAAAATTT-TAAA
**
7760906 AATTT-CCAAATTTTAAA
1 AATTTAAAAAATTTTAAA
7760923 AA
1 AA
7760925 AAAATTCAAA
Statistics
Matches: 115, Mismatches: 26, Indels: 28
0.68 0.15 0.17
Matches are distributed among these distances:
17 8 0.07
18 21 0.18
19 52 0.45
20 14 0.12
21 20 0.17
ACGTcount: A:0.57, C:0.06, G:0.05, T:0.32
Consensus pattern (18 bp):
AATTTAAAAAATTTTAAA
Found at i:7760915 original size:11 final size:10
Alignment explanation
Indices: 7760746--7760938 Score: 66
Period size: 10 Copynumber: 19.7 Consensus size: 10
7760736 CAAATATTCT
7760746 AAAACAATTTC
1 AAAA-AATTTC
*
7760757 AAAAAATTTT
1 AAAAAATTTC
*
7760767 AGAAAAACTT-
1 A-AAAAATTTC
*
7760777 -AAAAATTTT
1 AAAAAATTTC
* *
7760786 AAAGAATTCTG
1 AAAAAATT-TC
7760797 AAAAAATTT-
1 AAAAAATTTC
7760806 AAAAAATTT-
1 AAAAAATTTC
* * *
7760815 AGAAACTTTT
1 AAAAAATTTC
7760825 AAAAAATTT-
1 AAAAAATTTC
*
7760834 AAAAAA-AT-
1 AAAAAATTTC
*
7760842 ATAAAATTTC
1 AAAAAATTTC
*
7760852 TAGAAAATTT-
1 -AAAAAATTTC
* *
7760862 TAAAAACTTC
1 AAAAAATTTC
*
7760872 AAAAAGAATT-
1 AAAAA-ATTTC
*
7760882 AAGGAAATTT-
1 AA-AAAATTTC
*
7760892 AAAAGATTTC
1 AAAAAATTTC
7760902 AAAAAATTTC
1 AAAAAATTTC
* * *
7760912 -CAAATTTTAA
1 AAAAAATTT-C
*
7760922 AAAAAAATTC
1 AAAAAATTTC
7760932 AAAAAAT
1 AAAAAAT
7760939 GAAGATTTTA
Statistics
Matches: 136, Mismatches: 32, Indels: 29
0.69 0.16 0.15
Matches are distributed among these distances:
8 13 0.10
9 40 0.29
10 46 0.34
11 37 0.27
ACGTcount: A:0.59, C:0.06, G:0.05, T:0.31
Consensus pattern (10 bp):
AAAAAATTTC
Found at i:7761151 original size:20 final size:20
Alignment explanation
Indices: 7761128--7761166 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
7761118 TATAAATTTG
7761128 AAAAATT-TTGATAATTTTTC
1 AAAAATTGTT-ATAATTTTTC
7761148 AAAAATTGTTATAATTTTT
1 AAAAATTGTTATAATTTTT
7761167 TTAGAATTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (20 bp):
AAAAATTGTTATAATTTTTC
Found at i:7761242 original size:22 final size:23
Alignment explanation
Indices: 7761207--7761251 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
7761197 AAAAAATTTC
*
7761207 AAAAATTTTATTAGAAATTTTTA
1 AAAAATATTATTAGAAATTTTTA
* *
7761230 AAAAATATT-TTAGTATTTTTTA
1 AAAAATATTATTAGAAATTTTTA
7761252 TAATTTTTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (23 bp):
AAAAATATTATTAGAAATTTTTA
Found at i:7761377 original size:9 final size:9
Alignment explanation
Indices: 7761356--7761402 Score: 62
Period size: 9 Copynumber: 5.4 Consensus size: 9
7761346 TTTAAAAATT
7761356 ATTTTTA-A
1 ATTTTTAGA
*
7761364 GTTTTTAGA
1 ATTTTTAGA
7761373 ATTTTTAGA
1 ATTTTTAGA
7761382 ATTTTTA-A
1 ATTTTTAGA
*
7761390 AATTTTAGA
1 ATTTTTAGA
7761399 ATTT
1 ATTT
7761403 AAAAAAAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
8 13 0.39
9 20 0.61
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (9 bp):
ATTTTTAGA
Found at i:7761378 original size:17 final size:18
Alignment explanation
Indices: 7761356--7761402 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
7761346 TTTAAAAATT
* *
7761356 ATTTTTA-AGTTTTTAGA
1 ATTTTTAGAATTTTTAAA
7761373 ATTTTTAGAATTTTTAAA
1 ATTTTTAGAATTTTTAAA
7761391 A-TTTTAGAATTT
1 ATTTTTAGAATTT
7761403 AAAAAAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
17 18 0.67
18 9 0.33
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (18 bp):
ATTTTTAGAATTTTTAAA
Found at i:7761408 original size:17 final size:17
Alignment explanation
Indices: 7761375--7761408 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7761365 TTTTTAGAAT
**
7761375 TTTTAGAATTTTTAAAA
1 TTTTAGAATTTAAAAAA
7761392 TTTTAGAATTTAAAAAA
1 TTTTAGAATTTAAAAAA
7761409 AAATTTTAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (17 bp):
TTTTAGAATTTAAAAAA
Found at i:7761436 original size:21 final size:22
Alignment explanation
Indices: 7761407--7761470 Score: 60
Period size: 23 Copynumber: 2.9 Consensus size: 22
7761397 GAATTTAAAA
* *
7761407 AAAAATTTTAATA-TTTTTTAG
1 AAAATTTTTAAAATTTTTTTAG
7761428 AAAATTTTTAAAAATTTTTTTAG
1 AAAATTTTT-AAAATTTTTTTAG
*
7761451 -AATTTTTTAAGCAATTTTTT
1 AAAATTTTTAA--AATTTTTT
7761471 GAATTTTTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
21 10 0.28
22 10 0.28
23 16 0.44
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.55
Consensus pattern (22 bp):
AAAATTTTTAAAATTTTTTTAG
Found at i:7761440 original size:9 final size:10
Alignment explanation
Indices: 7761285--7761446 Score: 68
Period size: 10 Copynumber: 16.3 Consensus size: 10
7761275 TTTTATAAAA
*
7761285 TTTAAAAACT
1 TTTAAAAATT
7761295 TTTAAAAATAT
1 TTTAAAAAT-T
*
7761306 TTTAAAATTGT
1 TTTAAAAAT-T
7761317 TTTCAAAAA-T
1 TTT-AAAAATT
* *
7761327 TTTCAAAGTT
1 TTTAAAAATT
* *
7761337 TTT-AGATTT
1 TTTAAAAATT
7761346 TTTAAAAATT
1 TTTAAAAATT
** *
7761356 ATTTTTAAGTT
1 -TTTAAAAATT
*
7761367 TTT-AGAATT
1 TTTAAAAATT
*
7761376 TTT-AGAATT
1 TTTAAAAATT
7761385 TTT-AAAA-T
1 TTTAAAAATT
*
7761393 TTT-AGAATT
1 TTTAAAAATT
** *
7761402 TAAAAAAAAAT
1 T-TTAAAAATT
* *
7761413 TTTAATATTT
1 TTTAAAAATT
7761423 TTTAGAAAATT
1 TTTA-AAAATT
7761434 TTTAAAAATT
1 TTTAAAAATT
7761444 TTT
1 TTT
7761447 TTAGAATTTT
Statistics
Matches: 114, Mismatches: 29, Indels: 18
0.71 0.18 0.11
Matches are distributed among these distances:
8 7 0.06
9 30 0.26
10 40 0.35
11 33 0.29
12 4 0.04
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (10 bp):
TTTAAAAATT
Found at i:7761466 original size:12 final size:12
Alignment explanation
Indices: 7761419--7761470 Score: 56
Period size: 11 Copynumber: 4.6 Consensus size: 12
7761409 AAATTTTAAT
7761419 ATTTTTT-AGAA
1 ATTTTTTAAGAA
*
7761430 AATTTTTAA-AA
1 ATTTTTTAAGAA
*
7761441 ATTTTTTTAG-A
1 ATTTTTTAAGAA
*
7761452 ATTTTTTAAGCA
1 ATTTTTTAAGAA
7761464 ATTTTTT
1 ATTTTTT
7761471 GAATTTTTTC
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
11 25 0.74
12 9 0.26
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.58
Consensus pattern (12 bp):
ATTTTTTAAGAA
Found at i:7761487 original size:21 final size:22
Alignment explanation
Indices: 7761419--7761479 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
7761409 AAATTTTAAT
*
7761419 ATTTTTTAGAAAATTTTTAA-AA
1 ATTTTTTAG-AATTTTTTAAGAA
*
7761441 ATTTTTTTAGAATTTTTTAAGCA
1 A-TTTTTTAGAATTTTTTAAGAA
7761464 ATTTTTT-GAATTTTTT
1 ATTTTTTAGAATTTTTT
7761480 CTGAAATTAC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
21 9 0.26
22 16 0.46
23 10 0.29
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.59
Consensus pattern (22 bp):
ATTTTTTAGAATTTTTTAAGAA
Found at i:7761589 original size:13 final size:13
Alignment explanation
Indices: 7761571--7761595 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7761561 TATATTATGT
7761571 TAACAAAATTAAC
1 TAACAAAATTAAC
7761584 TAACAAAATTAA
1 TAACAAAATTAA
7761596 TCCCAAGTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (13 bp):
TAACAAAATTAAC
Found at i:7764368 original size:2 final size:2
Alignment explanation
Indices: 7764361--7764401 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
7764351 TATGCAATGA
7764361 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7764402 GAGAGAGAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7764406 original size:2 final size:2
Alignment explanation
Indices: 7764401--7764426 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7764391 ATATATATAT
7764401 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
7764427 TCATATGCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7767095 original size:22 final size:23
Alignment explanation
Indices: 7767055--7767116 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
7767045 TTTTTTTAGT
* * *
7767055 ATTTAAAATTATCATAATT-TAA
1 ATTTAAATTTATCAAAATTAAAA
*
7767077 ATTTAAATTTATTAAAATTAAAA
1 ATTTAAATTTATCAAAATTAAAA
7767100 ATTTAATATTTTATCAA
1 ATTTAA-A-TTTATCAA
7767117 TAAATCATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
22 16 0.50
23 8 0.25
24 1 0.03
25 7 0.22
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (23 bp):
ATTTAAATTTATCAAAATTAAAA
Found at i:7767602 original size:2 final size:2
Alignment explanation
Indices: 7767595--7767626 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7767585 TTGCTTTACC
7767595 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7767627 TCATGAGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7775009 original size:34 final size:34
Alignment explanation
Indices: 7774970--7775040 Score: 92
Period size: 34 Copynumber: 2.1 Consensus size: 34
7774960 TTCTTGCATT
* *
7774970 TTGGGTCAAAT-TCTTAAA-CTTCTTGTCTAATTTG
1 TTGGGTCAAATCTC-TAAAGATT-TTATCTAATTTG
7775004 TTGGGTCAAATCTCTAAAGATTTTATCTAATTTG
1 TTGGGTCAAATCTCTAAAGATTTTATCTAATTTG
7775038 TTG
1 TTG
7775041 CATTTTTTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
34 29 0.88
35 4 0.12
ACGTcount: A:0.25, C:0.13, G:0.15, T:0.46
Consensus pattern (34 bp):
TTGGGTCAAATCTCTAAAGATTTTATCTAATTTG
Found at i:7777559 original size:34 final size:35
Alignment explanation
Indices: 7777498--7777564 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
7777488 CACCGTTAAA
*
7777498 TGCTAAAATGTAGTGGCAGTTTGTACTATAAATGT
1 TGCTAAAATGTAGTGACAGTTTGTACTATAAATGT
* * *
7777533 TGCT-AAATTTAGTGACATTTTTTACTATAAAT
1 TGCTAAAATGTAGTGACAGTTTGTACTATAAAT
7777565 ACCGTTAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 24 0.86
35 4 0.14
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42
Consensus pattern (35 bp):
TGCTAAAATGTAGTGACAGTTTGTACTATAAATGT
Found at i:7779877 original size:2 final size:2
Alignment explanation
Indices: 7779830--7779858 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7779820 GAGAAGTGTG
7779830 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7779859 GATTTTCATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7781549 original size:26 final size:26
Alignment explanation
Indices: 7781500--7781564 Score: 89
Period size: 26 Copynumber: 2.6 Consensus size: 26
7781490 TAATATAACA
*
7781500 ATTAAAATAT-TAAAAATGATTTATT
1 ATTAAAATATATTAAAATGATTTATT
* *
7781525 ATTAAAATATATTGAAATTATTTATT
1 ATTAAAATATATTAAAATGATTTATT
7781551 ATTAAAAT-TATTAA
1 ATTAAAATATATTAA
7781565 TATTAAAAAC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 15 0.43
26 20 0.57
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (26 bp):
ATTAAAATATATTAAAATGATTTATT
Found at i:7781570 original size:15 final size:16
Alignment explanation
Indices: 7781533--7781655 Score: 61
Period size: 16 Copynumber: 7.3 Consensus size: 16
7781523 TTATTAAAAT
*
7781533 ATATTGAAATTATTTA
1 ATATTAAAATTATTTA
*
7781549 TTATTAAAATTA-TTA
1 ATATTAAAATTATTTA
* *
7781564 ATATTAAAAACTAATTA
1 ATATT-AAAATTATTTA
*
7781581 TATTTTAATAATAATATTTA
1 -ATATTAA-AAT--TATTTA
7781601 ATATTAAAATATTATGTTA
1 ATATT-AAA-ATTAT-TTA
* * *
7781620 ATATAAAAAATACTTA
1 ATATTAAAATTATTTA
* *
7781636 A-AATAAAACTATTTA
1 ATATTAAAATTATTTA
*
7781651 TTATT
1 ATATT
7781656 CTTTATATTA
Statistics
Matches: 80, Mismatches: 17, Indels: 20
0.68 0.15 0.17
Matches are distributed among these distances:
15 17 0.21
16 22 0.28
17 8 0.10
18 12 0.15
19 12 0.15
20 9 0.11
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (16 bp):
ATATTAAAATTATTTA
Found at i:7781573 original size:16 final size:17
Alignment explanation
Indices: 7781539--7781630 Score: 71
Period size: 19 Copynumber: 5.2 Consensus size: 17
7781529 AAATATATTG
*
7781539 AAATTATTTATTATT-A
1 AAATTATTTAATATTAA
7781555 AAATTA-TTAATATTAA
1 AAATTATTTAATATTAA
* * *
7781571 AAACTAATTATATTTTAA
1 AAATTATTTA-ATATTAA
*
7781589 TAATAATATTTAATATTAA
1 -AA-ATTATTTAATATTAA
*
7781608 AATATTATGTTAATATAAA
1 AA-ATTAT-TTAATATTAA
7781627 AAAT
1 AAAT
7781631 ACTTAAAATA
Statistics
Matches: 62, Mismatches: 8, Indels: 10
0.77 0.10 0.12
Matches are distributed among these distances:
15 7 0.11
16 12 0.19
17 3 0.05
18 15 0.24
19 19 0.31
20 6 0.10
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (17 bp):
AAATTATTTAATATTAA
Found at i:7781620 original size:19 final size:18
Alignment explanation
Indices: 7781543--7781636 Score: 65
Period size: 18 Copynumber: 5.4 Consensus size: 18
7781533 ATATTGAAAT
*
7781543 TATTTATTATTAAAAT--
1 TATTTAATATTAAAATAA
*
7781559 TA-TTAATATTAAAA-AC
1 TATTTAATATTAAAATAA
* *
7781575 TAATTATATTTTAATAATAA
1 TATTTA-ATATTAA-AATAA
*
7781595 TATTTAATATTAAAATAT
1 TATTTAATATTAAAATAA
7781613 TATGTTAATA-TAAAA-AA
1 TAT-TTAATATTAAAATAA
*
7781630 TACTTAA
1 TATTTAA
7781637 AATAAAACTA
Statistics
Matches: 63, Mismatches: 8, Indels: 14
0.74 0.09 0.16
Matches are distributed among these distances:
15 11 0.17
16 8 0.13
17 6 0.10
18 18 0.29
19 14 0.22
20 6 0.10
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.46
Consensus pattern (18 bp):
TATTTAATATTAAAATAA
Found at i:7781695 original size:23 final size:23
Alignment explanation
Indices: 7781661--7781870 Score: 100
Period size: 23 Copynumber: 9.1 Consensus size: 23
7781651 TTATTCTTTA
* *
7781661 TATTA-TTGTTAATATATTATAC
1 TATTATTTATTAATATATTATAT
7781683 TATTATTTATTAATAATAGTTATTAT
1 TATTATTTATTAAT-ATA-TTA-TAT
7781709 TA-TATTATATTAATAGTATGT-TA-
1 TATTATT-TATTAATA-TAT-TATAT
*
7781732 T-TTA-TTAATAATATATTAT-T
1 TATTATTTATTAATATATTATAT
* * * *
7781752 TATTAATATATTATTACAATAT-T
1 TATT-ATTTATTAATATATTATAT
* *
7781775 TATTAATTAAAGTAATAATATT-TAT
1 TATT-ATT-TATTAAT-ATATTATAT
* *
7781800 TATTATGTTATTTAT-TATTATAA
1 TATTAT-TTATTAATATATTATAT
* * *
7781823 TATTATTTACTAATGTATTATAA
1 TATTATTTATTAATATATTATAT
*
7781846 TATTATTTCTTAATATTATT-TAT
1 TATTATTTATTAATA-TATTATAT
7781869 TA
1 TA
7781871 ATAGTATACT
Statistics
Matches: 144, Mismatches: 24, Indels: 39
0.70 0.12 0.19
Matches are distributed among these distances:
19 1 0.01
20 5 0.03
21 9 0.06
22 17 0.12
23 60 0.42
24 20 0.14
25 18 0.12
26 14 0.10
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (23 bp):
TATTATTTATTAATATATTATAT
Found at i:7781718 original size:41 final size:41
Alignment explanation
Indices: 7781659--7781869 Score: 135
Period size: 44 Copynumber: 5.2 Consensus size: 41
7781649 TATTATTCTT
*
7781659 TATATTA-TTGTTAATATATTATACTATTATTTATTAATAA
1 TATATTATTTATTAATATATTATACTATTATTTATTAATAA
* *
7781699 TAGTTATTATTATATT-ATATTAATAGTA-TGTTATTTATTAATAA
1 TA--TATTATT-TATTAATA-TATTA-TACTATTATTTATTAATAA
*
7781743 TATATTATTTATTAATATATTATTAC-AATATTTATTAATTAAA
1 TATATTATTTATTAATATATTA-TACTATTATTTATTAA-T-AA
*
7781786 GTAATAATATTTATT-AT-TATGT-TA-T-TTA-TTATT-AT-A
1 -T-ATATTATTTATTAATATAT-TATACTATTATTTATTAATAA
* * * * *
7781822 -ATATTATTTACTAATGTATTATAATATTATTTCTTAATAT
1 TATATTATTTATTAATATATTATACTATTATTTATTAATAA
7781862 TAT-TTATT
1 TATATTATT
7781870 AATAGTATAC
Statistics
Matches: 135, Mismatches: 13, Indels: 46
0.70 0.07 0.24
Matches are distributed among these distances:
33 10 0.07
34 3 0.02
35 5 0.04
36 2 0.01
37 3 0.02
38 5 0.04
39 3 0.02
40 12 0.09
41 24 0.18
42 18 0.13
43 9 0.07
44 28 0.21
45 13 0.10
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (41 bp):
TATATTATTTATTAATATATTATACTATTATTTATTAATAA
Found at i:7781758 original size:15 final size:15
Alignment explanation
Indices: 7781683--7781843 Score: 89
Period size: 15 Copynumber: 10.4 Consensus size: 15
7781673 TATATTATAC
7781683 TATTATTTATTAATA
1 TATTATTTATTAATA
* *
7781698 -A-TAGTTATTATTA
1 TATTATTTATTAATA
* *
7781711 TATTATATTAATAGTA
1 TATTAT-TTATTAATA
*
7781727 TGTTATTTATTAATAATA
1 TATTATTTA-T--TAATA
7781745 TATTATTTATTAATA
1 TATTATTTATTAATA
*
7781760 TATTA-TTA-CAATA
1 TATTATTTATTAATA
*
7781773 T-TTATTAATTAAAGTAA
1 TATTATTTATT-AA-T-A
* *
7781790 TAATATTTATTATTA
1 TATTATTTATTAATA
*
7781805 TGTTATTTATTATTATAA
1 TATTATTTATTA--AT-A
* *
7781823 TATTATTTACTAATG
1 TATTATTTATTAATA
7781838 TATTAT
1 TATTAT
7781844 AATATTATTT
Statistics
Matches: 110, Mismatches: 21, Indels: 30
0.68 0.13 0.19
Matches are distributed among these distances:
12 3 0.03
13 17 0.15
14 5 0.05
15 34 0.31
16 16 0.15
17 5 0.05
18 30 0.27
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.55
Consensus pattern (15 bp):
TATTATTTATTAATA
Found at i:7781766 original size:18 final size:18
Alignment explanation
Indices: 7781659--7781929 Score: 84
Period size: 18 Copynumber: 13.8 Consensus size: 18
7781649 TATTATTCTT
* * *
7781659 TATATTATTGTTAATATAT
1 TATATTATTATTTAT-TAA
*
7781678 TATACTATTATTTATTAA
1 TATATTATTATTTATTAA
7781696 TAATAGTTATTATTATATTATA
1 T-ATA-TTATTATT-TATTA-A
*
7781718 TTAATAGTATGTTATTTATTAA
1 -T-ATA-T-TATTATTTATTAA
7781740 TA-ATATATTATTTATTAA
1 TATAT-TATTATTTATTAA
7781758 TATATTATTACAATATTTATTAA
1 TATATTA-T----TATTTATTAA
* *
7781781 TTAAAGTAATAATATTTATT-A
1 -T--A-TATTATTATTTATTAA
* *
7781802 T-TA-TGTTATTTATTAT
1 TATATTATTATTTATTAA
* *
7781818 TATAATATTATTTACTAA
1 TATATTATTATTTATTAA
* * **
7781836 TGTATTATAATATTATTTC
1 TATATTATTAT-TTATTAA
*
7781855 T-TAATATTATTTATTAA
1 TATATTATTATTTATTAA
*
7781872 TAGTATACTATTAATAATATTATAA
1 TA-TAT--TATT-AT-TTA-T-TAA
* *
7781897 TATAATATTATTTATCAA
1 TATATTATTATTTATTAA
*
7781915 TATAATATTATTTAT
1 TATATTATTATTTAT
7781930 AAGTAAAATT
Statistics
Matches: 194, Mismatches: 30, Indels: 57
0.69 0.11 0.20
Matches are distributed among these distances:
15 9 0.05
16 3 0.02
17 8 0.04
18 63 0.32
19 27 0.14
20 11 0.06
21 13 0.07
22 16 0.08
23 24 0.12
24 10 0.05
25 5 0.03
26 1 0.01
27 4 0.02
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.54
Consensus pattern (18 bp):
TATATTATTATTTATTAA
Found at i:7781784 original size:45 final size:43
Alignment explanation
Indices: 7781659--7781804 Score: 129
Period size: 41 Copynumber: 3.3 Consensus size: 43
7781649 TATTATTCTT
* * *
7781659 TATATTATTGTTAATATATTATACTATTATTTATTAA-TAATAG
1 TATATTATTATTAATATATTATAC-AATATTTATTAATTAATAA
* * * *
7781702 T-TATTATTA-TATTATATTA-ATAGTATGTTATTTATTAATAA
1 TATATTATTATTAATATATTATACAATAT-TTATTAATTAATAA
7781743 TATATTATTTATTAATATATTATTACAATATTTATTAATTAAAGTAA
1 TATATTA-TTATTAATATATTA-TACAATATTTATTAATT-AA-TAA
7781790 TAATATTTATTATTA
1 T-ATA-TTATTATTA
7781805 TGTTATTTAT
Statistics
Matches: 82, Mismatches: 10, Indels: 17
0.75 0.09 0.16
Matches are distributed among these distances:
39 4 0.05
40 7 0.09
41 15 0.18
42 12 0.15
43 4 0.05
44 9 0.11
45 8 0.10
46 7 0.09
47 4 0.05
48 9 0.11
49 3 0.04
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.54
Consensus pattern (43 bp):
TATATTATTATTAATATATTATACAATATTTATTAATTAATAA
Found at i:7787688 original size:18 final size:19
Alignment explanation
Indices: 7787665--7787707 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
7787655 AAAGAGAATG
7787665 AAGAAAAAAA-GAAAAGAA
1 AAGAAAAAAATGAAAAGAA
*
7787683 AAGAAAAAAATTAAAAGAA
1 AAGAAAAAAATGAAAAGAA
7787702 AA-AAAA
1 AAGAAAA
7787708 TAATAAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 14 0.61
19 9 0.39
ACGTcount: A:0.84, C:0.00, G:0.12, T:0.05
Consensus pattern (19 bp):
AAGAAAAAAATGAAAAGAA
Found at i:7787692 original size:19 final size:18
Alignment explanation
Indices: 7787668--7787707 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
7787658 GAGAATGAAG
7787668 AAAAAAAGAAAAGAAAAGA
1 AAAAAAAGAAAAGAAAA-A
**
7787687 AAAAAATTAAAAGAAAAA
1 AAAAAAAGAAAAGAAAAA
7787705 AAA
1 AAA
7787708 TAATAAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.85, C:0.00, G:0.10, T:0.05
Consensus pattern (18 bp):
AAAAAAAGAAAAGAAAAA
Found at i:7787739 original size:24 final size:24
Alignment explanation
Indices: 7787671--7787732 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
7787661 AATGAAGAAA
* **
7787671 AAAAGAAAAGAAAAGAA-AAAAATT
1 AAAAGAAAA-AAAATAATAAATTTT
7787695 AAAAGAAAAAAAATAATAAATTTT
1 AAAAGAAAAAAAATAATAAATTTT
*
7787719 AAAAGTAAAAAAAT
1 AAAAGAAAAAAAAT
7787733 TTAAAATGAC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
23 6 0.18
24 27 0.82
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (24 bp):
AAAAGAAAAAAAATAATAAATTTT
Found at i:7788450 original size:34 final size:35
Alignment explanation
Indices: 7788382--7788469 Score: 110
Period size: 34 Copynumber: 2.6 Consensus size: 35
7788372 TATTTTAACA
*
7788382 ACTCCTTTAACAAAAGGC-AATGAAACTTGAAAAG
1 ACTCATTTAACAAAAGGCTAATGAAACTTGAAAAG
* **
7788416 ACTC-TTCTAACTAAAGGCTAATGGTACTTG-AAAG
1 ACTCATT-TAACAAAAGGCTAATGAAACTTGAAAAG
7788450 ACTCATTTAACAAAAGGCTA
1 ACTCATTTAACAAAAGGCTA
7788470 CACTACTTGA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
33 2 0.04
34 34 0.72
35 11 0.23
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.25
Consensus pattern (35 bp):
ACTCATTTAACAAAAGGCTAATGAAACTTGAAAAG
Found at i:7788873 original size:117 final size:115
Alignment explanation
Indices: 7788660--7788873 Score: 277
Period size: 117 Copynumber: 1.8 Consensus size: 115
7788650 GTCGCTACTG
* ** *
7788660 AGAAAATTTAATGACATTCAAAATTGAATACATGGATATCACCACAGAGTGAATTTGATTAAAGC
1 AGAAAATTTAATGAAACCCAAAATTGAATACATGGATACCACCACAGAGTGAATTTGATTAAA-C
*
7788725 TTTGATATCACCACTGAAAGAGTTTTGATAAAAGATTGAATTTCACTACAA
65 TTTGATATCACCACTGAAAAAGTTTTGATAAAAGATTGAATTTCACTACAA
* * *
7788776 AGAAAATTTTAATGAAACCCAAACTTGAATACTTGGATACCACCATAGAGTGAATTTGATTAAA-
1 AGAAAA-TTTAATGAAACCCAAAATTGAATACATGGATACCACCACAGAGTGAATTTGATTAAAC
** * *
7788840 TTTCGGATATCATTATTGAAAAAGTTTTTATAAA
65 TTT--GATATCACCACTGAAAAAGTTTTGATAAA
7788874 GTCCATATAT
Statistics
Matches: 83, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
115 3 0.04
116 6 0.07
117 74 0.89
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.32
Consensus pattern (115 bp):
AGAAAATTTAATGAAACCCAAAATTGAATACATGGATACCACCACAGAGTGAATTTGATTAAACT
TTGATATCACCACTGAAAAAGTTTTGATAAAAGATTGAATTTCACTACAA
Found at i:7789023 original size:62 final size:63
Alignment explanation
Indices: 7788891--7789023 Score: 171
Period size: 63 Copynumber: 2.1 Consensus size: 63
7788881 TATTATTACC
* * * * *
7788891 AAAACATGCAGAAAACTTAGATATCACCATTGAGGAATTTGAATAAAAATCATATATTATCAT
1 AAAATATGCAAAAAACTCAGATATCACCACTGAGGAATTTGAATAAAAATCATATATCATCAT
* * *
7788954 AAAATATGCAAAAAACTCGGATATCATCACTGA-GAAGTTTTAAT-AAAATCATATATCATCAT
1 AAAATATGCAAAAAACTCAGATATCACCACTGAGGAA-TTTGAATAAAAATCATATATCATCAT
7789016 AAAATATG
1 AAAATATG
7789024 TAGAAGACTA
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
62 28 0.46
63 33 0.54
ACGTcount: A:0.48, C:0.13, G:0.11, T:0.29
Consensus pattern (63 bp):
AAAATATGCAAAAAACTCAGATATCACCACTGAGGAATTTGAATAAAAATCATATATCATCAT
Found at i:7789038 original size:62 final size:63
Alignment explanation
Indices: 7788891--7789039 Score: 169
Period size: 62 Copynumber: 2.4 Consensus size: 63
7788881 TATTATTACC
* * * *
7788891 AAAACATGCAGAAAACTTA-GATATCACCATTGAGGAATTTGAATAAAAATCATATATTATCAT
1 AAAATATGCAAAAAAC-TAGGATATCACCACTGAGGAATTTGAATAAAAATCATATATCATCAT
* * *
7788954 AAAATATGCAAAAAACTCGGATATCATCACTGA-GAAGTTTTAAT-AAAATCATATATCATCAT
1 AAAATATGCAAAAAACTAGGATATCACCACTGAGGAA-TTTGAATAAAAATCATATATCATCAT
* * *
7789016 AAAATATGTAGAAGACTAGGATAT
1 AAAATATGCAAAAAACTAGGATAT
7789040 TGCCATCGAA
Statistics
Matches: 73, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
62 41 0.56
63 32 0.44
ACGTcount: A:0.48, C:0.12, G:0.12, T:0.28
Consensus pattern (63 bp):
AAAATATGCAAAAAACTAGGATATCACCACTGAGGAATTTGAATAAAAATCATATATCATCAT
Found at i:7791084 original size:11 final size:9
Alignment explanation
Indices: 7791060--7791098 Score: 51
Period size: 9 Copynumber: 4.1 Consensus size: 9
7791050 ATCATTTTTA
7791060 TTTTTTTCT
1 TTTTTTTCT
7791069 TTTTTTTCT
1 TTTTTTTCT
7791078 TCCTTTTTTCT
1 T--TTTTTTCT
*
7791089 TTTCTTTCT
1 TTTTTTTCT
7791098 T
1 T
7791099 CTTTCACTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
9 18 0.67
11 9 0.33
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (9 bp):
TTTTTTTCT
Found at i:7791086 original size:20 final size:20
Alignment explanation
Indices: 7791061--7791099 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
7791051 TCATTTTTAT
*
7791061 TTTTTTCTTTTTTTTCTTCC
1 TTTTTTCTTTTCTTTCTTCC
7791081 TTTTTTCTTTTCTTTCTTC
1 TTTTTTCTTTTCTTTCTTC
7791100 TTTCACTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTTTTCTTTTCTTTCTTCC
Found at i:7791103 original size:16 final size:16
Alignment explanation
Indices: 7791065--7791103 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7791055 TTTTATTTTT
*
7791065 TTCTTTTTTTTCTTCC
1 TTCTTTCTTTTCTTCC
* *
7791081 TTTTTTCTTTTCTTTC
1 TTCTTTCTTTTCTTCC
7791097 TTCTTTC
1 TTCTTTC
7791104 ACTTCATCGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (16 bp):
TTCTTTCTTTTCTTCC
Found at i:7796925 original size:25 final size:26
Alignment explanation
Indices: 7796896--7796952 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
7796886 TAATATAACG
*
7796896 ATTAAAATAT-TAAAAATTATTTATT
1 ATTAAAATATATAAAAATGATTTATT
**
7796921 ATTAAAATATATTGAAATGATTTATT
1 ATTAAAATATATAAAAATGATTTATT
7796947 ATTAAA
1 ATTAAA
7796953 GTTATTAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 10 0.36
26 18 0.64
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.46
Consensus pattern (26 bp):
ATTAAAATATATAAAAATGATTTATT
Found at i:7796985 original size:13 final size:13
Alignment explanation
Indices: 7796969--7796998 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7796959 AATATTAAAA
*
7796969 AATAATTATATTT
1 AATAATAATATTT
7796982 AATAATAATATTT
1 AATAATAATATTT
7796995 AATA
1 AATA
7796999 TTAAAATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
AATAATAATATTT
Found at i:7797223 original size:13 final size:13
Alignment explanation
Indices: 7797205--7797272 Score: 50
Period size: 13 Copynumber: 5.1 Consensus size: 13
7797195 TTGCGTTATT
7797205 TATTAATATAATA
1 TATTAATATAATA
7797218 TATTAATAGT-ATA
1 TATTAATA-TAATA
*
7797231 TTATTTAT-TAATA
1 -TATTAATATAATA
* *
7797244 TATTATAATATTATT
1 TA-T-TAATATAATA
*
7797259 TATTAATATCATA
1 TATTAATATAATA
7797272 T
1 T
7797273 TATTTATTTA
Statistics
Matches: 43, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
12 3 0.07
13 24 0.56
14 11 0.26
15 5 0.12
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (13 bp):
TATTAATATAATA
Found at i:7797253 original size:41 final size:40
Alignment explanation
Indices: 7797208--7797294 Score: 113
Period size: 41 Copynumber: 2.1 Consensus size: 40
7797198 CGTTATTTAT
*
7797208 TAATATAATATATTAATAGT-ATATTATTTATTAATATATTA
1 TAATATAATATATTAATA-TCATATTATTTATTAAT-TAATA
* * *
7797249 TAATATTATTTATTAATATCATATTATTTATTTATTAATA
1 TAATATAATATATTAATATCATATTATTTATTAATTAATA
7797289 TAATAT
1 TAATAT
7797295 TATGTTAGCT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
40 11 0.27
41 30 0.73
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (40 bp):
TAATATAATATATTAATATCATATTATTTATTAATTAATA
Found at i:7797258 original size:23 final size:22
Alignment explanation
Indices: 7797228--7797290 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 22
7797218 TATTAATAGT
7797228 ATATTATTTATTAATATATTATA
1 ATATTATTTATTAATATA-TATA
*
7797251 ATATTATTTATTAATATCATATT
1 ATATTATTTATTAATAT-ATATA
7797274 AT-TTATTTATTAATATA
1 ATATTATTTATTAATATA
7797291 ATATTATGTT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
21 1 0.03
22 14 0.37
23 22 0.58
24 1 0.03
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (22 bp):
ATATTATTTATTAATATATATA
Found at i:7799165 original size:28 final size:28
Alignment explanation
Indices: 7799122--7799204 Score: 82
Period size: 28 Copynumber: 2.9 Consensus size: 28
7799112 ATATTATTCT
7799122 AATATTTATTTA-TAATAATATGTAT-TAA
1 AATA-TTATTTATTAATAATAT-TATATAA
*
7799150 AATATTATTTATTAAT-ATATTATAATAT
1 AATATTATTTATTAATAATATTAT-ATAA
* *
7799178 AATATTATTTATTTATTAATATAATAT
1 AATATTATTTA-TTAATAATATTATAT
7799205 TATTTATAAG
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
26 3 0.06
27 11 0.23
28 21 0.45
29 6 0.13
30 6 0.13
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (28 bp):
AATATTATTTATTAATAATATTATATAA
Found at i:7799169 original size:15 final size:15
Alignment explanation
Indices: 7799091--7799205 Score: 78
Period size: 15 Copynumber: 7.5 Consensus size: 15
7799081 ATTTGCCAAC
*
7799091 ATATTATTTATTAAC
1 ATATTATTTATTAAT
*
7799106 ATAAATATATTATTCTAAT
1 AT-ATTAT-TTA-T-TAAT
7799125 AT-TTATTTA-TAAT
1 ATATTATTTATTAAT
* *
7799138 A-A-TATGTATTAAA
1 ATATTATTTATTAAT
7799151 ATATTATTTATTAAT
1 ATATTATTTATTAAT
*
7799166 ATATTA-TAATATAAT
1 ATATTATTTAT-TAAT
7799181 ATTATTTATTTATTAAT
1 A-TA-TTATTTATTAAT
*
7799198 ATAATATT
1 ATATTATT
7799206 ATTTATAAGT
Statistics
Matches: 78, Mismatches: 10, Indels: 24
0.70 0.09 0.21
Matches are distributed among these distances:
12 5 0.06
13 9 0.12
14 4 0.05
15 26 0.33
16 11 0.14
17 14 0.18
18 4 0.05
19 5 0.06
ACGTcount: A:0.44, C:0.02, G:0.01, T:0.53
Consensus pattern (15 bp):
ATATTATTTATTAAT
Found at i:7804382 original size:14 final size:14
Alignment explanation
Indices: 7804358--7804398 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
7804348 AAACAACAAT
*
7804358 AAAAAATAGAAAAGG
1 AAAAAA-AGAAAAAG
7804373 AAAAAAAGAAAAAG
1 AAAAAAAGAAAAAG
7804387 AAAAAAAGAAAA
1 AAAAAAAGAAAA
7804399 CTTATCAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
14 19 0.76
15 6 0.24
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (14 bp):
AAAAAAAGAAAAAG
Found at i:7805390 original size:19 final size:20
Alignment explanation
Indices: 7805366--7805409 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
7805356 AAATGAGCTA
*
7805366 AAAAATAAAAT-CAAAAAAT
1 AAAAATAAAATGCAAAAAAG
*
7805385 AAAAATAAAATGGAAAAAAG
1 AAAAATAAAATGCAAAAAAG
7805405 AAAAA
1 AAAAA
7805410 AGAAACTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.80, C:0.02, G:0.07, T:0.11
Consensus pattern (20 bp):
AAAAATAAAATGCAAAAAAG
Found at i:7805712 original size:51 final size:51
Alignment explanation
Indices: 7805609--7805713 Score: 122
Period size: 51 Copynumber: 2.1 Consensus size: 51
7805599 AAATTCATCG
* * * ** *
7805609 AAAACTTCAACAAAAAACTAAGAATTCCATCAGTTTCTGGAAAAGTCACCA
1 AAAAATTCAACAAAAAACTAAAAAATCCATCAGTTTCTAAAAAACTCACCA
* *
7805660 AAAAATTCAACCAAAAACTAAAAAATCCATCGGTTTCTAAAAAACT-AGCCA
1 AAAAATTCAACAAAAAACTAAAAAATCCATCAGTTTCTAAAAAACTCA-CCA
7805711 AAA
1 AAA
7805714 TATGGCCAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
50 1 0.02
51 44 0.98
ACGTcount: A:0.51, C:0.21, G:0.08, T:0.20
Consensus pattern (51 bp):
AAAAATTCAACAAAAAACTAAAAAATCCATCAGTTTCTAAAAAACTCACCA
Found at i:7806323 original size:3 final size:3
Alignment explanation
Indices: 7806261--7806304 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
7806251 AAGAAAAAAA
* ** *
7806261 AAT AAT AAT AAT AGT AAT AAT TTT GAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7806305 ACCATGTACA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (3 bp):
AAT
Found at i:7806360 original size:13 final size:13
Alignment explanation
Indices: 7806343--7806386 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
7806333 ATATTGCCAT
7806343 ATAATATATTATA
1 ATAATATATTATA
* *
7806356 TTAATATACTATA
1 ATAATATATTATA
*
7806369 ATAATATATAATA
1 ATAATATATTATA
7806382 A-AATA
1 ATAATA
7806387 ATAAAAATAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
12 4 0.15
13 22 0.85
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (13 bp):
ATAATATATTATA
Found at i:7806874 original size:18 final size:17
Alignment explanation
Indices: 7806833--7806875 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
7806823 CAAAGGTCTT
7806833 AGATTCACAAAGATTTC
1 AGATTCACAAAGATTTC
7806850 A-AGTTCACAAAGACTTTC
1 AGA-TTCACAAAGA-TTTC
7806868 AGATTCAC
1 AGATTCAC
7806876 GGGAAAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 1 0.04
17 11 0.48
18 10 0.43
19 1 0.04
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.28
Consensus pattern (17 bp):
AGATTCACAAAGATTTC
Found at i:7806924 original size:86 final size:83
Alignment explanation
Indices: 7806819--7807080 Score: 325
Period size: 86 Copynumber: 3.1 Consensus size: 83
7806809 GGTTTTTAAA
7806819 TTCGCAAAGG-TCTTAGATTCACAAAGATTTCAAGTTCACAAAGACTTTCAGATTCACGGGAAAG
1 TTCGCAAAGGTTC-TAGATTCACAAAGATTTCAAGTTCACAAAGACTTTCAGATTCAC-GGAAA-
7806883 AAAAATTCACAAGATTCCAAGT
63 AAAAATTCACAAGATT-CAAGT
* * * *
7806905 TTTGCAAAGGTTCTAGATTCGCAAAGATTTCAAGTTCGCAAAGACTTTCAAATTCACAGGAAAAA
1 TTCGCAAAGGTTCTAGATTCACAAAGATTTCAAGTTCACAAAGACTTTCAGATTCAC-GGAAAAA
*
7806970 AAGATTCATAAGATTTCAAGT
65 AA-ATTCACAAGA-TTCAAGT
* * * * *
7806991 TTCGCAAAGGTTTTAGATTCAAAAAGATGT-AAGGTTCATAAAGACTTTCAGATTCAC--AATAA
1 TTCGCAAAGGTTCTAGATTCACAAAGATTTCAA-GTTCACAAAGACTTTCAGATTCACGGAAAAA
7807053 AAATTCACAAGACTTCAAGT
65 AAATTCACAAGA-TTCAAGT
7807073 TTCGCAAA
1 TTCGCAAA
7807081 AGTACAAGGT
Statistics
Matches: 155, Mismatches: 17, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
82 24 0.15
83 6 0.04
85 6 0.04
86 115 0.74
87 4 0.03
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (83 bp):
TTCGCAAAGGTTCTAGATTCACAAAGATTTCAAGTTCACAAAGACTTTCAGATTCACGGAAAAAA
AATTCACAAGATTCAAGT
Found at i:7806942 original size:17 final size:18
Alignment explanation
Indices: 7806922--7806955 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
7806912 AGGTTCTAGA
7806922 TTCGCAAAGA-TTTCAAG
1 TTCGCAAAGACTTTCAAG
7806939 TTCGCAAAGACTTTCAA
1 TTCGCAAAGACTTTCAA
7806956 ATTCACAGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (18 bp):
TTCGCAAAGACTTTCAAG
Found at i:7807251 original size:102 final size:103
Alignment explanation
Indices: 7807066--7807263 Score: 301
Period size: 102 Copynumber: 1.9 Consensus size: 103
7807056 TTCACAAGAC
* *
7807066 TTCAAGTTTCGCAAAAGTACAAGGTTTGTAAGGACTTTCAAATTCGCAAGAAAGAAATATTTATA
1 TTCAAGTTTCACAAAAGTACAAGGTTTGCAAGGACTTTCAAATTCGCAAGAAAGAAATATTTATA
*
7807131 AGATTCCAAGTTTCGCAAAGGTTCTAAATTCGCATGAT
66 AGATTCCAAGTTTCGCAAAGATTCTAAATTCGCATGAT
* * *
7807169 TTCAAGTTTCACAAAGGTGA-AAGGTTTGCAAGGACTTTCAGATT-GCAAGAAAGAAATATTTGT
1 TTCAAGTTTCACAAAAGT-ACAAGGTTTGCAAGGACTTTCAAATTCGCAAGAAAGAAATATTTAT
* *
7807232 AAGATTCCAAGTTTTGCAAAGATTCTAGATTC
65 AAGATTCCAAGTTTCGCAAAGATTCTAAATTC
7807264 ACAAAGATGC
Statistics
Matches: 86, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
102 47 0.55
103 38 0.44
104 1 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (103 bp):
TTCAAGTTTCACAAAAGTACAAGGTTTGCAAGGACTTTCAAATTCGCAAGAAAGAAATATTTATA
AGATTCCAAGTTTCGCAAAGATTCTAAATTCGCATGAT
Found at i:7807338 original size:86 final size:85
Alignment explanation
Indices: 7807176--7807354 Score: 241
Period size: 86 Copynumber: 2.1 Consensus size: 85
7807166 GATTTCAAGT
* * * * *
7807176 TTCACAAAGGTGAAAGGTTTGCAAGGACTTTCAGATTGCAAGAAAGAAATATTTGTAAGATTCCA
1 TTCACAAAGATGAAAGGTTTACAAGGACTTTCAGATTACAAGAAAGAAAGATTTGCAAGATTCCA
*
7807241 AGTTTTGCAAAGATTCTAGA
66 AGTTTTACAAAGATTCTAGA
* * **
7807261 TTCACAAAGATGCAAGGTTTACAAGGACTTTCAGATTTATAAGAAAGAAAGATTTGCAAGATTTT
1 TTCACAAAGATGAAAGGTTTACAAGGACTTTCAGA-TTACAAGAAAGAAAGATTTGCAAGATTCC
*
7807326 AAGTTTTACAAAGGTTCTAGA
65 AAGTTTTACAAAGATTCTAGA
*
7807347 TTCTCAAA
1 TTCACAAA
7807355 TATTTCAAGT
Statistics
Matches: 81, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
85 32 0.40
86 49 0.60
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.31
Consensus pattern (85 bp):
TTCACAAAGATGAAAGGTTTACAAGGACTTTCAGATTACAAGAAAGAAAGATTTGCAAGATTCCA
AGTTTTACAAAGATTCTAGA
Found at i:7811041 original size:12 final size:13
Alignment explanation
Indices: 7811009--7811042 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
7810999 AACATAATAC
7811009 AAACAATAAGAAA
1 AAACAATAAGAAA
*
7811022 AAAAAATAAG-AA
1 AAACAATAAGAAA
7811034 AAACAATAA
1 AAACAATAA
7811043 TCTCAAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.79, C:0.06, G:0.06, T:0.09
Consensus pattern (13 bp):
AAACAATAAGAAA
Found at i:7812030 original size:17 final size:16
Alignment explanation
Indices: 7811996--7812035 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
7811986 ATAAAACCAT
7811996 AATAAAA-AAACTAAA
1 AATAAAATAAACTAAA
*
7812011 AATAAAATAAGCTAAAA
1 AATAAAATAAACT-AAA
7812028 AATAAAAT
1 AATAAAAT
7812036 CAAAAAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 7 0.32
16 4 0.18
17 11 0.50
ACGTcount: A:0.75, C:0.05, G:0.03, T:0.17
Consensus pattern (16 bp):
AATAAAATAAACTAAA
Found at i:7812938 original size:9 final size:9
Alignment explanation
Indices: 7812905--7813011 Score: 67
Period size: 9 Copynumber: 11.8 Consensus size: 9
7812895 AAAATAAAAA
7812905 AATAATAAC
1 AATAATAAC
* *
7812914 AACAACAAC
1 AATAATAAC
*
7812923 AACAATAAC
1 AATAATAAC
*
7812932 AATAATAAT
1 AATAATAAC
7812941 AATAATAAAC
1 AATAAT-AAC
* *
7812951 CAT-GTAGA-
1 AATAATA-AC
*
7812959 AGATAATAAT
1 A-ATAATAAC
*
7812969 AATAATAAT
1 AATAATAAC
*
7812978 AATAATAAT
1 AATAATAAC
*
7812987 AATAATATAT
1 AATAATA-AC
7812997 AAT-ATAAC
1 AATAATAAC
7813005 AATAATA
1 AATAATA
7813012 CTATAATATA
Statistics
Matches: 80, Mismatches: 11, Indels: 14
0.76 0.10 0.13
Matches are distributed among these distances:
8 5 0.06
9 63 0.79
10 12 0.15
ACGTcount: A:0.64, C:0.08, G:0.03, T:0.25
Consensus pattern (9 bp):
AATAATAAC
Found at i:7812967 original size:3 final size:3
Alignment explanation
Indices: 7812961--7813011 Score: 77
Period size: 3 Copynumber: 17.0 Consensus size: 3
7812951 CATGTAGAAG
*
7812961 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA TATA AT- ATA ACA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA
7813006 ATA ATA
1 ATA ATA
7813012 CTATAATATA
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
2 2 0.05
3 39 0.89
4 3 0.07
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7813022 original size:21 final size:21
Alignment explanation
Indices: 7812963--7813022 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
7812953 TGTAGAAGAT
*
7812963 AATAATAATAATAATA-ATAAT
1 AATAATAAT-ATAATATATAAC
7812984 AATAATAATAT-ATAATATAAC
1 AATAATAATATAAT-ATATAAC
*
7813005 AATAATACTATAATATAT
1 AATAATAATATAATATAT
7813023 TGCCATATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
19 2 0.06
20 3 0.09
21 27 0.79
22 2 0.06
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (21 bp):
AATAATAATATAATATATAAC
Found at i:7813404 original size:14 final size:15
Alignment explanation
Indices: 7813375--7813428 Score: 55
Period size: 13 Copynumber: 3.9 Consensus size: 15
7813365 GTATGAAAAT
7813375 AAAAAAAGAATG-AGG
1 AAAAAAAGAA-GAAGG
7813390 AAAAAAAGAA-AAGG
1 AAAAAAAGAAGAAGG
*
7813404 AAATAAA-AAGAA-G
1 AAAAAAAGAAGAAGG
7813417 AAAAAAA-AAGAA
1 AAAAAAAGAAGAA
7813429 AAAAATATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
13 14 0.40
14 11 0.31
15 10 0.29
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.04
Consensus pattern (15 bp):
AAAAAAAGAAGAAGG
Found at i:7813430 original size:19 final size:18
Alignment explanation
Indices: 7813389--7813433 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
7813379 AAAGAATGAG
**
7813389 GAAAAAAAGAAAAGGAAA
1 GAAAAAAAGAAAAAAAAA
*
7813407 TAAAAAGAAGAAAAAAAAA
1 GAAAAA-AAGAAAAAAAAA
7813426 GAAAAAAA
1 GAAAAAAA
7813434 TATAATAATA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (18 bp):
GAAAAAAAGAAAAAAAAA
Found at i:7813438 original size:29 final size:31
Alignment explanation
Indices: 7813370--7813438 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 31
7813360 GCAATGTATG
* *
7813370 AAAATAAAAAAAGAATGAGGAAAAAAAGAAA
1 AAAATATAAAAAGAATGAGAAAAAAAAGAAA
*
7813401 AGGAA-ATAAAAAGAA-GA-AAAAAAAAGAAA
1 A-AAATATAAAAAGAATGAGAAAAAAAAGAAA
7813430 AAAATATAA
1 AAAATATAA
7813439 TAATAATAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
28 2 0.06
29 16 0.50
30 2 0.06
31 10 0.31
32 2 0.06
ACGTcount: A:0.78, C:0.00, G:0.14, T:0.07
Consensus pattern (31 bp):
AAAATATAAAAAGAATGAGAAAAAAAAGAAA
Found at i:7814645 original size:116 final size:116
Alignment explanation
Indices: 7814406--7814645 Score: 272
Period size: 116 Copynumber: 2.1 Consensus size: 116
7814396 TCGAATATTG
* * * * *
7814406 CCACCAAGAAAATTTCATGACATTCAAACTTGAATACATAGATATCACCACTGGATGAACTTGAT
1 CCACCAAAAAAATTTAATGAAATCCAAACTTGAATACATAGATATCACCACAGGATGAACTTGAT
* * * * * *
7814471 TAAAAATTGGATATCACCACCGAAAGAGTTTTTATAAAAGTTCAGATTTCA
66 TAAAAATTAGATATCACCACCAAAAAAGTTCTTATAAAAGTCCAGATATCA
* * *
7814522 CCA-CAAAAAAATTTTAATGAAATCCAAACTTGAATACTTGGATATCACCACA-GAGTGAATTTG
1 CCACCAAAAAAA-TTTAATGAAATCCAAACTTGAATACATAGATATCACCACAGGA-TGAACTTG
* *
7814585 ATT-AAAGTTCAGATATCACCACCAAAAAAGTTCTTATAAAA-TCCATATATCA
64 ATTAAAAATT-AGATATCACCACCAAAAAAGTTCTTATAAAAGTCCAGATATCA
*
7814637 TCACCAAAA
1 CCACCAAAA
7814646 CATTCAGAAA
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
115 24 0.23
116 79 0.77
ACGTcount: A:0.43, C:0.19, G:0.11, T:0.28
Consensus pattern (116 bp):
CCACCAAAAAAATTTAATGAAATCCAAACTTGAATACATAGATATCACCACAGGATGAACTTGAT
TAAAAATTAGATATCACCACCAAAAAAGTTCTTATAAAAGTCCAGATATCA
Found at i:7815062 original size:39 final size:39
Alignment explanation
Indices: 7814955--7815068 Score: 147
Period size: 39 Copynumber: 2.9 Consensus size: 39
7814945 CAATGCAAAT
* *
7814955 GCTAATGTCTTTATGCAAAAACAAGAATTCACGCCATGG
1 GCTAATGTCTTTATGCAAATACAAGAATTCACGTCATGG
* * *
7814994 GCTAACGTCTTTATGCAAATACAAGAATTCATGTCATGT
1 GCTAATGTCTTTATGCAAATACAAGAATTCACGTCATGG
* ** *
7815033 GTTAATGTCTTTATGCAAATGTAAAAATTCACGTCA
1 GCTAATGTCTTTATGCAAATACAAGAATTCACGTCA
7815069 CAATGGAACA
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 64 1.00
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.32
Consensus pattern (39 bp):
GCTAATGTCTTTATGCAAATACAAGAATTCACGTCATGG
Found at i:7815200 original size:38 final size:38
Alignment explanation
Indices: 7815158--7815231 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
7815148 AAGCAAATAC
* *
7815158 GAATGCCTTTTGGGATGTAAAAGTAATGATGCAAATGT
1 GAATGCCTTTTGGGATCTAAAAGCAATGATGCAAATGT
* * *
7815196 GAATGTCTTTTGTGATCTAGAAGCAATGATGCAAAT
1 GAATGCCTTTTGGGATCTAAAAGCAATGATGCAAAT
7815232 ATTTTTTTCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.34, C:0.09, G:0.24, T:0.32
Consensus pattern (38 bp):
GAATGCCTTTTGGGATCTAAAAGCAATGATGCAAATGT
Found at i:7816857 original size:22 final size:22
Alignment explanation
Indices: 7816818--7816881 Score: 62
Period size: 24 Copynumber: 2.9 Consensus size: 22
7816808 CACTTAATCA
*
7816818 TTTTTTTTTC-CTATTTTCTTTCTC
1 TTTTTTTTTCACT-TTCT-TTTC-C
7816842 TTTTTTTTTCACTTTCTTTTCC
1 TTTTTTTTTCACTTTCTTTTCC
*
7816864 TTCTTTTTT--CTTTCTTTT
1 TTTTTTTTTCACTTTCTTTT
7816882 TTGAATGGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
20 9 0.24
22 9 0.24
23 4 0.11
24 13 0.35
25 2 0.05
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.77
Consensus pattern (22 bp):
TTTTTTTTTCACTTTCTTTTCC
Found at i:7816911 original size:12 final size:12
Alignment explanation
Indices: 7816894--7816927 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
7816884 GAATGGACTC
7816894 AAAACTTTTTTG
1 AAAACTTTTTTG
*
7816906 AAAACTTTCTTG
1 AAAACTTTTTTG
7816918 AAAACTTTTT
1 AAAACTTTTT
7816928 GTTGGACATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.47
Consensus pattern (12 bp):
AAAACTTTTTTG
Found at i:7819701 original size:42 final size:42
Alignment explanation
Indices: 7819654--7819734 Score: 105
Period size: 42 Copynumber: 1.9 Consensus size: 42
7819644 TGCAGCACTG
7819654 CTAAATTATAC-C-TTTTAGTGGCATTTATAGCTT-CAAATGTCA
1 CTAAATT-TACTCATTTT-GTGGCATTTATAG-TTCCAAATGTCA
*
7819696 CTAAATTTTCTCATTTTGTGGCATTTATAGTTCCAAATG
1 CTAAATTTACTCATTTTGTGGCATTTATAGTTCCAAATG
7819735 ATGCTATATG
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
41 4 0.11
42 27 0.77
43 4 0.11
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.43
Consensus pattern (42 bp):
CTAAATTTACTCATTTTGTGGCATTTATAGTTCCAAATGTCA
Found at i:7820447 original size:2 final size:2
Alignment explanation
Indices: 7820440--7820478 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
7820430 ACCTTGTTAA
* *
7820440 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT GT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7820479 GCTTAAAAGG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:7823468 original size:3 final size:3
Alignment explanation
Indices: 7823460--7823507 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
7823450 TTAACCTAAA
*
7823460 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT AAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7823508 ATTTTTGGTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:7825002 original size:114 final size:113
Alignment explanation
Indices: 7824661--7825006 Score: 376
Period size: 122 Copynumber: 3.0 Consensus size: 113
7824651 ACTATTAATA
* * *
7824661 AAAAAATAAAATCATAAGTGGTAATTTTATTTAAAATATTTACACAAAAAAATTTCTAAAATATT
1 AAAAAATAAAATCATAAGTGGTGATTTTA-TTAAAATATTTACACAAAAAATTTTTTAAAATA-T
* * * *
7824726 TTAAAAGTGTTAGAGATATTTTAGAATATTTTTTCAAACACACAAAAAAATTATT
64 TTAAAAGTGTTAAAAATATTTTAG-A-ATTTTTGC--A-ACATAAAAAAATTATT
* * **
7824781 AATAACTATAAAATTATGTGTGGTGATTTTATTAAAATATTTACACAAAGAAATTTTTTAAAATA
1 AA-AA-AATAAAATCATAAGTGGTGATTTTATTAAAATATTTACACAAA-AAATTTTTTAAAATA
*
7824846 TTCTAAAAGTGTTAAAAATATTTTAAAAATTTTTG-AACATAAAAAAA-TATT
63 TT-TAAAAGTGTTAAAAATATTTT-AGAATTTTTGCAACATAAAAAAATTATT
*
7824897 AAAAAATAAAATCAAAAGTGGTGATTTTATGTAAAATATTTACACAAACAAATTTTTTAAAAT-T
1 AAAAAATAAAATCATAAGTGGTGATTTTAT-TAAAATATTTACACAAA-AAATTTTTTAAAATAT
* * *
7824961 TTGAAAAGTGTTACAAATATTTTAGAA-CTTTGCAAGTATAAAAAAA
64 TT-AAAAGTGTTAAAAATATTTTAGAATTTTTGCAA-CATAAAAAAA
7825007 CCATTATTGA
Statistics
Matches: 195, Mismatches: 22, Indels: 24
0.81 0.09 0.10
Matches are distributed among these distances:
112 4 0.02
113 6 0.03
114 51 0.26
115 33 0.17
116 6 0.03
117 10 0.05
118 1 0.01
120 2 0.01
121 28 0.14
122 53 0.27
123 1 0.01
ACGTcount: A:0.49, C:0.06, G:0.08, T:0.37
Consensus pattern (113 bp):
AAAAAATAAAATCATAAGTGGTGATTTTATTAAAATATTTACACAAAAAATTTTTTAAAATATTT
AAAAGTGTTAAAAATATTTTAGAATTTTTGCAACATAAAAAAATTATT
Found at i:7825020 original size:114 final size:110
Alignment explanation
Indices: 7824665--7825021 Score: 333
Period size: 114 Copynumber: 3.1 Consensus size: 110
7824655 TTAATAAAAA
* * * *
7824665 AATAAAATCATAAGTGGTAATTTTATTTAAAATATTTACACAAAAAAATTTCTAAAATATTTTAA
1 AATAAAATCAAAAGTGGTGATTTTA-TTAAAATATTTACACAAAAAATTTTTTAAAATA-TTTAA
* * * *
7824730 AAGTGTTAGAGATATTTTAGAATATTTTTTCAAACACACAAAAAAATTATT
64 AAGTGTTAAAAATATTTTAG-A-ATTTTTGC-AACATA-AAAAAAATTATT
* *
7824781 AATAACTATAAAATTATGTGTGGTGATTTTATTAAAATATTTACACAAAGAAATTTTTTAAAATA
1 AATAA-AATCAAA--A---GTGGTGATTTTATTAAAATATTTACACAAA-AAATTTTTTAAAATA
* **
7824846 TTCTAAAAGTGTTAAAAATATTTTAAAAATTTTTG-AACATAAAAAAATATTAAAA
59 TT-TAAAAGTGTTAAAAATATTTT-AGAATTTTTGCAACATAAAAAAA-ATT-ATT
7824901 AATAAAATCAAAAGTGGTGATTTTATGTAAAATATTTACACAAACAAATTTTTTAAAAT-TTTGA
1 AATAAAATCAAAAGTGGTGATTTTAT-TAAAATATTTACACAAA-AAATTTTTTAAAATATTT-A
* * *
7824965 AAAGTGTTACAAATATTTTAGAA-CTTTGCAAGTATAAAAAAACCATTATT
63 AAAGTGTTAAAAATATTTTAGAATTTTTGCAA-CATAAAAAAA--ATTATT
*
7825015 GATAAAA
1 AATAAAA
7825022 GATAAGGTCA
Statistics
Matches: 201, Mismatches: 24, Indels: 34
0.78 0.09 0.13
Matches are distributed among these distances:
112 4 0.02
113 6 0.03
114 50 0.25
115 34 0.17
116 5 0.02
117 5 0.02
118 6 0.03
119 14 0.07
120 6 0.03
121 26 0.13
122 44 0.22
123 1 0.00
ACGTcount: A:0.49, C:0.06, G:0.08, T:0.37
Consensus pattern (110 bp):
AATAAAATCAAAAGTGGTGATTTTATTAAAATATTTACACAAAAAATTTTTTAAAATATTTAAAA
GTGTTAAAAATATTTTAGAATTTTTGCAACATAAAAAAAATTATT
Found at i:7825135 original size:12 final size:12
Alignment explanation
Indices: 7825118--7825156 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
7825108 TTTCAAACAC
7825118 AAAATAATAAAT
1 AAAATAATAAAT
7825130 AAAATAATAAA-
1 AAAATAATAAAT
*
7825141 ATAAACAATAAAT
1 A-AAATAATAAAT
7825154 AAA
1 AAA
7825157 CATTACAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
11 1 0.04
12 22 0.92
13 1 0.04
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.21
Consensus pattern (12 bp):
AAAATAATAAAT
Found at i:7828596 original size:18 final size:17
Alignment explanation
Indices: 7828564--7828604 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
7828554 AATAAGTAAC
*
7828564 AATAAATAATAATAATA
1 AATAAATAATAATAAAA
*
7828581 AATAAATTATTAATAAAA
1 AATAAA-TAATAATAAAA
7828599 AATAAA
1 AATAAA
7828605 ATCACAAGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
AATAAATAATAATAAAA
Found at i:7828791 original size:119 final size:121
Alignment explanation
Indices: 7828578--7828805 Score: 354
Period size: 119 Copynumber: 1.9 Consensus size: 121
7828568 AATAATAATA
* *
7828578 ATAAATAAATTATTAATAAAAAATAAAATCACAAGTGGTGATTTTATTTAAAATATTTACACAAA
1 ATAAAAAAATTATTAATAAAAAATAAAATCACAAATGGTGATTTTATTTAAAATATTTACACAAA
* * *
7828643 AAATTTTGTTTAAATATTCTAAAAGTGTTATAAATATTTTAGAATTTTTTTCAAAC
66 AAATTTTGCTCAAATATTCTAAAAGTGTTAAAAATATTTTAGAATTTTTTTCAAAC
**
7828699 ATAAAAAAATTATTAAT-AACTATAAAATCACAAATGGTGATTTTA-TTAAAATATTTACACAAA
1 ATAAAAAAATTATTAATAAAAAATAAAATCACAAATGGTGATTTTATTTAAAATATTTACAC-AA
*
7828762 AAAATTTT-CTCAAATATTTTAAAAGTGTTAAAAATATTTTAGAA
65 AAAATTTTGCTCAAATATTCTAAAAGTGTTAAAAATATTTTAGAA
7828806 AATTTCAAAT
Statistics
Matches: 98, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
119 47 0.48
120 35 0.36
121 16 0.16
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.39
Consensus pattern (121 bp):
ATAAAAAAATTATTAATAAAAAATAAAATCACAAATGGTGATTTTATTTAAAATATTTACACAAA
AAATTTTGCTCAAATATTCTAAAAGTGTTAAAAATATTTTAGAATTTTTTTCAAAC
Found at i:7828861 original size:24 final size:25
Alignment explanation
Indices: 7828826--7828875 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
7828816 AAAAAAATAA
*
7828826 TACAAAATAAA-TTT-TAAAATATT
1 TACAAAAGAAATTTTATAAAATATT
7828849 TACACAAAGAAATTTTATAAAATATT
1 TACA-AAAGAAATTTTATAAAATATT
7828875 T
1 T
7828876 TAAAAGTGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 4 0.17
24 6 0.26
25 3 0.13
26 10 0.43
ACGTcount: A:0.54, C:0.06, G:0.02, T:0.38
Consensus pattern (25 bp):
TACAAAAGAAATTTTATAAAATATT
Found at i:7828983 original size:214 final size:212
Alignment explanation
Indices: 7828624--7829014 Score: 522
Period size: 214 Copynumber: 1.8 Consensus size: 212
7828614 GGTGATTTTA
* *
7828624 TTTAAAATATTTACACAAAAAATTTTGTTTAAATATTCTAAAAGTGTTATAAATATTTTAGAATT
1 TTTAAAATATTTACACAAAAAATTTTGATAAAATATTCTAAAAGTGTTATAAATATTTTAGAA-T
** ** *
7828689 TTTTTCAAACATAAAAAAATTATTAATAACTATAAAATCACAAATGGTGATTTTATTAAAATATT
65 ACTTTCAAACATAAAAAAATTATTAATAAAAATAAAATCACAAATAGTGATTTTATT-AAATATT
* *
7828754 TACACAAAAAAATTTTCTCAAA-TATTTTAAAAGTGTTAAAAATATTTTAGAAAATTTCAAATAA
129 CAAACAAAAAAATTTTCT-AAAGTATTTTAAAAGTGTTAAAAATATTTTAGAAAATTTCAAATAA
7828818 AAAAATAATACAAAATAAAT
193 AAAAATAATACAAAATAAAT
*
7828838 TTTAAAATATTTACACAAAGAAATTTT-ATAAAATATTTTAAAAGTGTTATAAATATTTTA-AA-
1 TTTAAAATATTTACACAAA-AAATTTTGATAAAATATTCTAAAAGTGTTATAAATATTTTAGAAT
* * *
7828900 ACTTTGAAAGCATAAAAAAAACATTATTAATAAAAAATAAAGTCACAAGTAGTGATTTTATT-AA
65 ACTTTCAAA-CAT--AAAAAA-ATTATTAAT-AAAAATAAAATCACAAATAGTGATTTTATTAAA
* * *
7828964 TATTCAAATAAATAAATTTTCTAAAGTATTTTAAAAGTGTTAGAAATATTT
125 TATTCAAACAAAAAAATTTTCTAAAGTATTTTAAAAGTGTTAAAAATATTT
7829015 ATAATTTTTT
Statistics
Matches: 154, Mismatches: 16, Indels: 14
0.84 0.09 0.08
Matches are distributed among these distances:
211 6 0.04
212 3 0.02
213 5 0.03
214 99 0.64
215 16 0.10
216 25 0.16
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (212 bp):
TTTAAAATATTTACACAAAAAATTTTGATAAAATATTCTAAAAGTGTTATAAATATTTTAGAATA
CTTTCAAACATAAAAAAATTATTAATAAAAATAAAATCACAAATAGTGATTTTATTAAATATTCA
AACAAAAAAATTTTCTAAAGTATTTTAAAAGTGTTAAAAATATTTTAGAAAATTTCAAATAAAAA
AATAATACAAAATAAAT
Found at i:7830222 original size:2 final size:2
Alignment explanation
Indices: 7830215--7830264 Score: 73
Period size: 2 Copynumber: 25.0 Consensus size: 2
7830205 AGGTCTAACA
* *
7830215 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT AT TT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
7830257 AC AT AT AT
1 AT AT AT AT
7830265 GTAAATCAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Done.