Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25814696
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 122000 characters in sequence are not A, C, G, or T
File 39 of 126
Found at i:7830761 original size:11 final size:11
Alignment explanation
Indices: 7830727--7830761 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
7830717 CGAAAAATGG
*
7830727 AAGAAAAGAAA
1 AAGAAAAAAAA
*
7830738 AAGAGAAAAAA
1 AAGAAAAAAAA
7830749 AAGAAAAAAAA
1 AAGAAAAAAAA
7830760 AA
1 AA
7830762 TGTCTTGTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (11 bp):
AAGAAAAAAAA
Found at i:7832045 original size:32 final size:32
Alignment explanation
Indices: 7832008--7832072 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
7831998 TTTAGCAGGC
* * *
7832008 TTCAATAAACTCTAAGTGCATATATAGATTCA
1 TTCAATAAACTCCAAATCCATATATAGATTCA
7832040 TTCAATAAACTCCAAATCCATATATAGATTCA
1 TTCAATAAACTCCAAATCCATATATAGATTCA
7832072 T
1 T
7832073 GAATTATACC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.42, C:0.18, G:0.06, T:0.34
Consensus pattern (32 bp):
TTCAATAAACTCCAAATCCATATATAGATTCA
Found at i:7833638 original size:19 final size:19
Alignment explanation
Indices: 7833606--7833643 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
7833596 CCCATGGACT
* *
7833606 GCCTTTACTGATTATATTA
1 GCCTTCACTAATTATATTA
7833625 GCCTTCACTAATTATATTA
1 GCCTTCACTAATTATATTA
7833644 TCTTTTCTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.18, G:0.08, T:0.45
Consensus pattern (19 bp):
GCCTTCACTAATTATATTA
Found at i:7838715 original size:18 final size:19
Alignment explanation
Indices: 7838630--7838715 Score: 69
Period size: 18 Copynumber: 4.9 Consensus size: 19
7838620 CTTTCTTCTT
*
7838630 GATACATTTGAGATGGAGA
1 GATACATTTGAGGTGGAGA
* *
7838649 -ATATATTT-A--AGGA-A
1 GATACATTTGAGGTGGAGA
*
7838663 GATACATTTGTGGTGG-GA
1 GATACATTTGAGGTGGAGA
*
7838681 GATATATTTGAGGTGGAG-
1 GATACATTTGAGGTGGAGA
*
7838699 GATACATTTAAGGTGGA
1 GATACATTTGAGGTGGA
7838716 TAATAACCAT
Statistics
Matches: 52, Mismatches: 9, Indels: 13
0.70 0.12 0.18
Matches are distributed among these distances:
14 1 0.02
15 10 0.19
17 1 0.02
18 39 0.75
19 1 0.02
ACGTcount: A:0.34, C:0.03, G:0.31, T:0.31
Consensus pattern (19 bp):
GATACATTTGAGGTGGAGA
Found at i:7842493 original size:17 final size:17
Alignment explanation
Indices: 7842471--7842504 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7842461 AGATTTTAGC
7842471 TAAAAAAATTCAAAATT
1 TAAAAAAATTCAAAATT
**
7842488 TAAAAATTTTCAAAATT
1 TAAAAAAATTCAAAATT
7842505 ATATTTTAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (17 bp):
TAAAAAAATTCAAAATT
Found at i:7843490 original size:66 final size:66
Alignment explanation
Indices: 7843408--7843531 Score: 230
Period size: 66 Copynumber: 1.9 Consensus size: 66
7843398 ATTTTACGAC
*
7843408 CACTATTCTGCTATAAAATCACTATTTAATTCCCTGCATGTAATATAGTATTCATCTCCTAACTG
1 CACTATTCTGCTATAAAATCACTATTTAATTCCCTACATGTAATATAGTATTCATCTCCTAACTG
7843473 T
66 T
*
7843474 CACTATTCTGCTATAAAATCATTATTTAATTCCCTACATGTAATATAGTATTCATCTC
1 CACTATTCTGCTATAAAATCACTATTTAATTCCCTACATGTAATATAGTATTCATCTC
7843532 TATTATACTA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 56 1.00
ACGTcount: A:0.31, C:0.22, G:0.06, T:0.40
Consensus pattern (66 bp):
CACTATTCTGCTATAAAATCACTATTTAATTCCCTACATGTAATATAGTATTCATCTCCTAACTG
T
Found at i:7847542 original size:405 final size:405
Alignment explanation
Indices: 7846791--7848009 Score: 2375
Period size: 405 Copynumber: 3.0 Consensus size: 405
7846781 TTGACAACTG
7846791 ATTTATTCTACATAAATTAAGATTCTAATGAGGTTACTTAAATATTTGCCATATAGATGATGGAA
1 ATTTATTCTACATAAATTAAGATTCTAATGAGGTTACTTAAATATTTGCCATATAGATGATGGAA
7846856 ATCAGGAAGTTTCCAAATTAATAAGTGAACTACAAGCAAAGATAGAAGATGCAAATGCTGAGACA
66 ATCAGGAAGTTTCCAAATTAATAAGTGAACTACAAGCAAAGATAGAAGATGCAAATGCTGAGACA
7846921 CGTTCAGAGCGAGAAAAGGTAGTTGAACTTTGTCATATTTTATGGACAACAATAGAGTTTATAGC
131 CGTTCAGAGCGAGAAAAGGTAGTTGAACTTTGTCATATTTTATGGACAACAATAGAGTTTATAGC
*
7846986 ATTCCGATTTGTTACTTGTAGGCTAAGAAGCTGGCGGTGGAAAATGAAAAACTCAAATATCGCAT
196 ATTCCGATTTGTTACTTGTAGGCTAAGAAGCTGGCTGTGGAAAATGAAAAACTCAAATATCGCAT
7847051 TGCCCATCTTGTCCAAGCAGTTAGGGAGGCTGATCAGAAGTTAGAGAGTATGAGAGGTAACAATT
261 TGCCCATCTTGTCCAAGCAGTTAGGGAGGCTGATCAGAAGTTAGAGAGTATGAGAGGTAACAATT
7847116 GAAAACTTTTGTGCTGACTTTGAAGCATATATGTTATCAAATTGAGTTACAACCAGAAAGTCAGA
326 GAAAACTTTTGTGCTGACTTTGAAGCATATATGTTATCAAATTGAGTTACAACCAGAAAGTCAGA
7847181 AACCATATACAAGTA
391 AACCATATACAAGTA
7847196 ATTTATTCTACATAAATTAAGATTCTAATGAGGTTACTTAAATATTTGCCATATAGATGATGGAA
1 ATTTATTCTACATAAATTAAGATTCTAATGAGGTTACTTAAATATTTGCCATATAGATGATGGAA
7847261 ATCAGGAAGTTTCCAAATTAATAAGTGAACTACAAGCAAAGATAGAAGATGCAAATGCTGAGACA
66 ATCAGGAAGTTTCCAAATTAATAAGTGAACTACAAGCAAAGATAGAAGATGCAAATGCTGAGACA
*
7847326 CGTTCAGAGCGAGAAAAGGTAGTTGAACTTTGTCATATTCTATGGACAACAATAGAGTTTATAGC
131 CGTTCAGAGCGAGAAAAGGTAGTTGAACTTTGTCATATTTTATGGACAACAATAGAGTTTATAGC
7847391 ATTCCGATTTGTTACTTGTAGGCTAAGAAGCTGGCTGTGGAAAATGAAAAACTCAAATATCGCAT
196 ATTCCGATTTGTTACTTGTAGGCTAAGAAGCTGGCTGTGGAAAATGAAAAACTCAAATATCGCAT
7847456 TGCCCATCTTGTCCAAGCAGTTAGGGAGGCTGATCAGAAGTTAGAGAGTATGAGAGGTAACAATT
261 TGCCCATCTTGTCCAAGCAGTTAGGGAGGCTGATCAGAAGTTAGAGAGTATGAGAGGTAACAATT
7847521 GAAAACTTTTGTGCTGACTTTGAAGCATATATGTTATCAAATTGAGTTACAACCAGAAAGTCAGA
326 GAAAACTTTTGTGCTGACTTTGAAGCATATATGTTATCAAATTGAGTTACAACCAGAAAGTCAGA
7847586 AACCATATACAAGTA
391 AACCATATACAAGTA
7847601 ATTTATTCTACATAAATTAAGATTCTAATGAGGTTACTTAAATATTTGCCATATAGATGATGGAA
1 ATTTATTCTACATAAATTAAGATTCTAATGAGGTTACTTAAATATTTGCCATATAGATGATGGAA
*
7847666 ATCAGGAAGTTTCCAAATTAATAAGTGAACTGCAAGCAAAGATAGAAGATGCAAATGCTGAGACA
66 ATCAGGAAGTTTCCAAATTAATAAGTGAACTACAAGCAAAGATAGAAGATGCAAATGCTGAGACA
*
7847731 CGTTCAGAGCGAGATAAGGTAGTTGAACTTTGTCATATTTTATGGACAACAATAGAGTTTATAGC
131 CGTTCAGAGCGAGAAAAGGTAGTTGAACTTTGTCATATTTTATGGACAACAATAGAGTTTATAGC
7847796 ATTCCGATTTGTTACTTGTAGGCTAAGAAGCTGGCTGTGGAAAATGAAAAACTCAAATATCGCAT
196 ATTCCGATTTGTTACTTGTAGGCTAAGAAGCTGGCTGTGGAAAATGAAAAACTCAAATATCGCAT
*
7847861 TGCCCATCTTGTCCAAACAGTTAGGGAGGCTGATCAGAAGTTAGAGAGTATGAGAGGTAACAATT
261 TGCCCATCTTGTCCAAGCAGTTAGGGAGGCTGATCAGAAGTTAGAGAGTATGAGAGGTAACAATT
* *
7847926 GAAAACTTTTGTGCTGACTTTGAAGCATATATGTTATCAAATTGAGTTACAACCAGATAGTCGGA
326 GAAAACTTTTGTGCTGACTTTGAAGCATATATGTTATCAAATTGAGTTACAACCAGAAAGTCAGA
7847991 AACCATATACAAGTA
391 AACCATATACAAGTA
7848006 ATTT
1 ATTT
7848010 TGGGTATAGG
Statistics
Matches: 806, Mismatches: 8, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
405 806 1.00
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.29
Consensus pattern (405 bp):
ATTTATTCTACATAAATTAAGATTCTAATGAGGTTACTTAAATATTTGCCATATAGATGATGGAA
ATCAGGAAGTTTCCAAATTAATAAGTGAACTACAAGCAAAGATAGAAGATGCAAATGCTGAGACA
CGTTCAGAGCGAGAAAAGGTAGTTGAACTTTGTCATATTTTATGGACAACAATAGAGTTTATAGC
ATTCCGATTTGTTACTTGTAGGCTAAGAAGCTGGCTGTGGAAAATGAAAAACTCAAATATCGCAT
TGCCCATCTTGTCCAAGCAGTTAGGGAGGCTGATCAGAAGTTAGAGAGTATGAGAGGTAACAATT
GAAAACTTTTGTGCTGACTTTGAAGCATATATGTTATCAAATTGAGTTACAACCAGAAAGTCAGA
AACCATATACAAGTA
Found at i:7859045 original size:15 final size:17
Alignment explanation
Indices: 7859025--7859057 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
7859015 TACACTAAAA
7859025 AACAATG-ATCA-AAGT
1 AACAATGCATCATAAGT
7859040 AACAATGCATCATAAGT
1 AACAATGCATCATAAGT
7859057 A
1 A
7859058 CAAATTCGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 4 0.25
17 5 0.31
ACGTcount: A:0.52, C:0.15, G:0.12, T:0.21
Consensus pattern (17 bp):
AACAATGCATCATAAGT
Found at i:7861115 original size:88 final size:88
Alignment explanation
Indices: 7860966--7861141 Score: 343
Period size: 88 Copynumber: 2.0 Consensus size: 88
7860956 GATGCGAGAG
7860966 AATGTCACGGATTTAATAAAGAGTTTTGAATCCTACATCAAATAAAATAAAAAGATCACTGGGGT
1 AATGTCACGGATTTAATAAAGAGTTTTGAATCCTACATCAAATAAAATAAAAAGATCACTGGGGT
7861031 ATATAACTCATCTTGTGAGACAT
66 ATATAACTCATCTTGTGAGACAT
7861054 AATGTCACGGATTTAATAAAGAGTTTTGAATCCTACATCAAATAAAATAAAAAGATCACTGGGGT
1 AATGTCACGGATTTAATAAAGAGTTTTGAATCCTACATCAAATAAAATAAAAAGATCACTGGGGT
*
7861119 ATATAAGTCATCTTGTGAGACAT
66 ATATAACTCATCTTGTGAGACAT
7861142 CTTTTATAGG
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 87 1.00
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.30
Consensus pattern (88 bp):
AATGTCACGGATTTAATAAAGAGTTTTGAATCCTACATCAAATAAAATAAAAAGATCACTGGGGT
ATATAACTCATCTTGTGAGACAT
Found at i:7861274 original size:58 final size:58
Alignment explanation
Indices: 7861207--7861326 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 58
7861197 AAATATGAAC
* *
7861207 CGTGACAAAAAAATAGATCTAAAACG-TCGGATGAGTAAATAC-CTAAATCTCAAAATCG
1 CGTGACAAAAAAATAAATCTAAAA-GATCGGATGAGTAAATACTC-AAATCTCAAAATCA
*
7861265 CGTGACAAAAAAATAAATCTGAAAGATCGGATGAGTAAATACTCAAATCTCAAAATCA
1 CGTGACAAAAAAATAAATCTAAAAGATCGGATGAGTAAATACTCAAATCTCAAAATCA
7861323 CGTG
1 CGTG
7861327 GATTCGAAGC
Statistics
Matches: 57, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
57 1 0.02
58 55 0.96
59 1 0.02
ACGTcount: A:0.47, C:0.17, G:0.16, T:0.21
Consensus pattern (58 bp):
CGTGACAAAAAAATAAATCTAAAAGATCGGATGAGTAAATACTCAAATCTCAAAATCA
Found at i:7864513 original size:157 final size:156
Alignment explanation
Indices: 7864227--7864833 Score: 991
Period size: 157 Copynumber: 3.8 Consensus size: 156
7864217 GAAAAAACTC
7864227 GTGAATTTCAGCTTTTTTTTTTAATTGATAATTAATATTAACAGTTCTTGTGAGTTGAAATCATA
1 GTGAATTTCAGCTTTTTTTTTTAATTGATAATTAATATTAACAGTTCTTGTGAGTTGAAATCATA
*
7864292 CTTCTCCTTCCTGTATGAATTTCAGCTTTTTTTTTAATTGATAATTAATATTAACAGTTCTTGTG
66 CTTCTCCTTCCTGTGTGAATTTCAGCTTTTTTTTTAATTGATAATTAATATTAACAGTTCTTGTG
7864357 AGTTGAAATCATACTTCTCTTTCCTGT
131 AGTTGAAATCATACTTCTC-TTCCTGT
7864384 GTGAATTTCAGCTTTTTTTTTTAATTGATAATTAATATTAACAGTTCTTGTGAGTTGAAATCATA
1 GTGAATTTCAGCTTTTTTTTTTAATTGATAATTAATATTAACAGTTCTTGTGAGTTGAAATCATA
7864449 CTTCTCCTTCCTGTGTGAATTTCAGCTTTTTTTTTAATTGATAATTAATATTAACAGTTCTTGTG
66 CTTCTCCTTCCTGTGTGAATTTCAGCTTTTTTTTTAATTGATAATTAATATTAACAGTTCTTGTG
*
7864514 AGTTGAAATCAATACTTCTCCTCCTGT
131 AGTTGAAATC-ATACTTCTCTTCCTGT
7864541 GTGAATTTCAGCTTTTTTTTAATTGTTTTTTTTAAATTGATAATTAATATTAACAGTTCTTGTGA
1 GTGAATTTCAGC----------TT-TTTTTTTT-AATTGATAATTAATATTAACAGTTCTTGTGA
*
7864606 GTTGAAATCATACTTCCTCTTTCCTGTGTGAATTTCAGCTTTTTTTTTAATTGATAAATTAATAT
54 GTTGAAATCATACTT-CTCCTTCCTGTGTGAATTTCAGCTTTTTTTTTAATTGAT-AATTAATAT
7864671 TAACAGTTCTTGTGAGTTGAAATCATACTTCTCCTTCCTGT
117 TAACAGTTCTTGTGAGTTGAAATCATACTTCT-CTTCCTGT
*
7864712 GTGAATTTCAGC-TTTTTTTTAAATTGATAATTAATATTAACAGTTCTTGTGAGTTGAAATCATA
1 GTGAATTTCAGCTTTTTTTTTTAATTGATAATTAATATTAACAGTTCTTGTGAGTTGAAATCATA
* * *
7864776 CTTCTCTTTCCTGTGTGAATTTCAGGTTTTTTTTAAATTGATAATTAATATTAACAGT
66 CTTCTCCTTCCTGTGTGAATTTCAGCTTTTTTTTTAATTGATAATTAATATTAACAGT
7864834 GATATTCATA
Statistics
Matches: 427, Mismatches: 7, Indels: 33
0.91 0.01 0.07
Matches are distributed among these distances:
156 16 0.04
157 194 0.45
158 55 0.13
159 7 0.02
160 1 0.00
167 2 0.00
168 8 0.02
169 46 0.11
170 46 0.11
171 52 0.12
ACGTcount: A:0.27, C:0.13, G:0.13, T:0.48
Consensus pattern (156 bp):
GTGAATTTCAGCTTTTTTTTTTAATTGATAATTAATATTAACAGTTCTTGTGAGTTGAAATCATA
CTTCTCCTTCCTGTGTGAATTTCAGCTTTTTTTTTAATTGATAATTAATATTAACAGTTCTTGTG
AGTTGAAATCATACTTCTCTTCCTGT
Found at i:7864755 original size:249 final size:248
Alignment explanation
Indices: 7864318--7864811 Score: 911
Period size: 249 Copynumber: 2.0 Consensus size: 248
7864308 GAATTTCAGC
*
7864318 TTTTTTTTTAATTGATAATTAATATTAACAGTTCTTGTGAGTTGAAATCATACTTCTCTTTCCTG
1 TTTTTTTTAAATTGATAATTAATATTAACAGTTCTTGTGAGTTGAAATCATACTTCTCTTTCCTG
7864383 TGTGAATTTCAGCTTTTTTTTTTAATTGATAATTAATATTAACAGTTCTTGTGAGTTGAAATCAT
66 TGTGAATTTCAGCTTTTTTTTTTAATTGATAATTAATATTAACAGTTCTTGTGAGTTGAAATCAT
*
7864448 ACTTCTCCTTCCTGTGTGAATTTCAGCTTTTTTTTTAATTGATAATTAATATTAACAGTTCTTGT
131 ACTTCTCCTTCCTGTGTGAATTTCAGCTTTTTTTTAAATTGATAATTAATATTAACAGTTCTTGT
7864513 GAGTTGAAATCAATACTTCTC-CTCCTGTGTGAATTTCAGCTTTTTTTTAATTG
196 GAGTTGAAATC-ATACTTCTCTCTCCTGTGTGAATTTCAGCTTTTTTTTAATTG
7864566 TTTTTTTTAAATTGATAATTAATATTAACAGTTCTTGTGAGTTGAAATCATACTTCCTCTTTCCT
1 TTTTTTTTAAATTGATAATTAATATTAACAGTTCTTGTGAGTTGAAATCATACTT-CTCTTTCCT
7864631 GTGTGAATTTCAGC-TTTTTTTTTAATTGATAAATTAATATTAACAGTTCTTGTGAGTTGAAATC
65 GTGTGAATTTCAGCTTTTTTTTTTAATTGAT-AATTAATATTAACAGTTCTTGTGAGTTGAAATC
7864695 ATACTTCTCCTTCCTGTGTGAATTTCAGCTTTTTTTTAAATTGATAATTAATATTAACAGTTCTT
129 ATACTTCTCCTTCCTGTGTGAATTTCAGCTTTTTTTTAAATTGATAATTAATATTAACAGTTCTT
* *
7864760 GTGAGTTGAAATCATACTTCTCTTTCCTGTGTGAATTTCAGGTTTTTTTTAA
194 GTGAGTTGAAATCATACTTCTCTCTCCTGTGTGAATTTCAGCTTTTTTTTAA
7864812 ATTGATAATT
Statistics
Matches: 239, Mismatches: 4, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
248 79 0.33
249 160 0.67
ACGTcount: A:0.26, C:0.13, G:0.13, T:0.49
Consensus pattern (248 bp):
TTTTTTTTAAATTGATAATTAATATTAACAGTTCTTGTGAGTTGAAATCATACTTCTCTTTCCTG
TGTGAATTTCAGCTTTTTTTTTTAATTGATAATTAATATTAACAGTTCTTGTGAGTTGAAATCAT
ACTTCTCCTTCCTGTGTGAATTTCAGCTTTTTTTTAAATTGATAATTAATATTAACAGTTCTTGT
GAGTTGAAATCATACTTCTCTCTCCTGTGTGAATTTCAGCTTTTTTTTAATTG
Found at i:7864779 original size:78 final size:78
Alignment explanation
Indices: 7864227--7864833 Score: 837
Period size: 78 Copynumber: 7.6 Consensus size: 78
7864217 GAAAAAACTC
7864227 GTGAATTTCAGCTTTTTTTTTTAATTGATAATTAATATTAACAGTTCTTGTGAGTTGAAATCATA
1 GTGAATTTCAGC-TTTTTTTTTAATTGATAATTAATATTAACAGTTCTTGTGAGTTGAAATCATA
7864292 CTTCTCCTTCCTGT
65 CTTCTCCTTCCTGT
*
7864306 ATGAATTTCAGCTTTTTTTTTAATTGATAATTAATATTAACAGTTCTTGTGAGTTGAAATCATAC
1 GTGAATTTCAGCTTTTTTTTTAATTGATAATTAATATTAACAGTTCTTGTGAGTTGAAATCATAC
*
7864371 TTCTCTTTCCTGT
66 TTCTCCTTCCTGT
7864384 GTGAATTTCAGCTTTTTTTTTTAATTGATAATTAATATTAACAGTTCTTGTGAGTTGAAATCATA
1 GTGAATTTCAGC-TTTTTTTTTAATTGATAATTAATATTAACAGTTCTTGTGAGTTGAAATCATA
7864449 CTTCTCCTTCCTGT
65 CTTCTCCTTCCTGT
7864463 GTGAATTTCAGCTTTTTTTTTAATTGATAATTAATATTAACAGTTCTTGTGAGTTGAAATCAATA
1 GTGAATTTCAGCTTTTTTTTTAATTGATAATTAATATTAACAGTTCTTGTGAGTTGAAATC-ATA
7864528 CTTCTCC-TCCTGT
65 CTTCTCCTTCCTGT
* * * * *
7864541 GTGAATTTCAGC-TTTTTTTTAATTGTTTTTTTTAAATTGATAATTAATA-TTAACAGTTCT-TG
1 GTGAATTTCAGCTTTTTTTTTAATTG------AT-AATTAAT-ATTAACAGTT--C--TTGTGAG
** * * *
7864603 -TGAGTTGAAATCATACTTCCTCTTTCCTGT
54 TTGAAATCATA-C-TTC-T-C-C-TTCCTGT
7864633 GTGAATTTCAGCTTTTTTTTTAATTGATAAATTAATATTAACAGTTCTTGTGAGTTGAAATCATA
1 GTGAATTTCAGCTTTTTTTTTAATTGAT-AATTAATATTAACAGTTCTTGTGAGTTGAAATCATA
7864698 CTTCTCCTTCCTGT
65 CTTCTCCTTCCTGT
*
7864712 GTGAATTTCAGCTTTTTTTTAAATTGATAATTAATATTAACAGTTCTTGTGAGTTGAAATCATAC
1 GTGAATTTCAGCTTTTTTTTTAATTGATAATTAATATTAACAGTTCTTGTGAGTTGAAATCATAC
*
7864777 TTCTCTTTCCTGT
66 TTCTCCTTCCTGT
* *
7864790 GTGAATTTCAGGTTTTTTTTAAATTGATAATTAATATTAACAGT
1 GTGAATTTCAGCTTTTTTTTTAATTGATAATTAATATTAACAGT
7864834 GATATTCATA
Statistics
Matches: 476, Mismatches: 27, Indels: 51
0.86 0.05 0.09
Matches are distributed among these distances:
77 13 0.03
78 235 0.49
79 132 0.28
80 1 0.00
81 1 0.00
82 1 0.00
83 6 0.01
84 10 0.02
85 15 0.03
86 12 0.03
87 13 0.03
88 4 0.01
89 1 0.00
90 1 0.00
92 18 0.04
93 13 0.03
ACGTcount: A:0.27, C:0.13, G:0.13, T:0.48
Consensus pattern (78 bp):
GTGAATTTCAGCTTTTTTTTTAATTGATAATTAATATTAACAGTTCTTGTGAGTTGAAATCATAC
TTCTCCTTCCTGT
Found at i:7872051 original size:19 final size:20
Alignment explanation
Indices: 7872003--7872042 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
7871993 ACTCGAAATT
7872003 AATAAAATATTATTTTTTAA
1 AATAAAATATTATTTTTTAA
7872023 AATAAAATATTATTTTTTAA
1 AATAAAATATTATTTTTTAA
7872043 TTTAAATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
AATAAAATATTATTTTTTAA
Found at i:7872058 original size:24 final size:24
Alignment explanation
Indices: 7872044--7872114 Score: 85
Period size: 24 Copynumber: 3.0 Consensus size: 24
7872034 ATTTTTTAAT
7872044 TTAAATATAAAATTATATATATAA
1 TTAAATATAAAATTATATATATAA
*
7872068 TTAAATATAAAATTAAATA-ACTAA
1 TTAAATATAAAATTATATATA-TAA
7872092 TTAAA-A-AATAATTTATATATATA
1 TTAAATATAA-AA-TTATATATATA
7872115 GGGTAGGGTA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
22 2 0.05
23 4 0.10
24 34 0.83
25 1 0.02
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.39
Consensus pattern (24 bp):
TTAAATATAAAATTATATATATAA
Found at i:7872069 original size:12 final size:12
Alignment explanation
Indices: 7872044--7872114 Score: 65
Period size: 12 Copynumber: 5.9 Consensus size: 12
7872034 ATTTTTTAAT
*
7872044 TTAAATATAAAA
1 TTAAATATATAA
*
7872056 TTATATATATAA
1 TTAAATATATAA
*
7872068 TTAAATATAAAA
1 TTAAATATATAA
7872080 TTAAATA-ACTAA
1 TTAAATATA-TAA
*
7872092 TTAAA-AAATAA
1 TTAAATATATAA
*
7872103 TTTATATATATA
1 -TTAAATATATA
7872115 GGGTAGGGTA
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
11 5 0.10
12 39 0.81
13 4 0.08
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.39
Consensus pattern (12 bp):
TTAAATATATAA
Found at i:7879933 original size:11 final size:11
Alignment explanation
Indices: 7879919--7879950 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
7879909 ACCGAAAAGA
7879919 AAAGAAAAAAT
1 AAAGAAAAAAT
7879930 AAAGAAAAAAT
1 AAAGAAAAAAT
7879941 AAAGAGAAAA
1 AAAGA-AAAA
7879951 GGGAGAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 16 0.80
12 4 0.20
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.06
Consensus pattern (11 bp):
AAAGAAAAAAT
Found at i:7880965 original size:24 final size:22
Alignment explanation
Indices: 7880919--7880970 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
7880909 AAATAATTTT
*
7880919 TATAAATATGTATTTTTTAAAA
1 TATAAATATGTAGTTTTTAAAA
*
7880941 TATAAATATATTAGTTTTTATAAA
1 TATAAATAT-GTAGTTTTTA-AAA
*
7880965 TTTAAA
1 TATAAA
7880971 ATAATATGAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 9 0.36
23 8 0.32
24 8 0.32
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (22 bp):
TATAAATATGTAGTTTTTAAAA
Found at i:7882155 original size:11 final size:11
Alignment explanation
Indices: 7882136--7882173 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
7882126 TTAAAATTAC
7882136 AAAAGAATTTTT
1 AAAA-AATTTTT
*
7882148 AAAAAATTCTT
1 AAAAAATTTTT
7882159 AAAAAA-TTTT
1 AAAAAATTTTT
7882169 AAAAA
1 AAAAA
7882174 GTTCTAGGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 8 0.33
11 12 0.50
12 4 0.17
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (11 bp):
AAAAAATTTTT
Found at i:7882433 original size:17 final size:18
Alignment explanation
Indices: 7882399--7882440 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
7882389 CTTGAAAGTT
*
7882399 TTTAAAAATCCAGGAAAA
1 TTTAAAAATCCAGAAAAA
*
7882417 TTTAAAAAT-CTGAAAAA
1 TTTAAAAATCCAGAAAAA
7882434 -TTAAAAA
1 TTTAAAAA
7882441 CAATATGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 7 0.32
17 6 0.27
18 9 0.41
ACGTcount: A:0.60, C:0.07, G:0.07, T:0.26
Consensus pattern (18 bp):
TTTAAAAATCCAGAAAAA
Found at i:7882599 original size:15 final size:15
Alignment explanation
Indices: 7882575--7882604 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7882565 ATTTTCTTGT
7882575 ATTTTATATATTTTA
1 ATTTTATATATTTTA
*
7882590 ATTTTTTATATTTTA
1 ATTTTATATATTTTA
7882605 TAAAAATTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
ATTTTATATATTTTA
Found at i:7882639 original size:36 final size:37
Alignment explanation
Indices: 7882585--7882663 Score: 99
Period size: 36 Copynumber: 2.1 Consensus size: 37
7882575 ATTTTATATA
*
7882585 TTTTAATTTTTTATATTTTATAAAAATTTT-AGGAATT
1 TTTTTATTTTTTATATTTTATAAAAATTTTGA-GAATT
* *
7882622 TTTTTATTTTTT-TATTTTCTAGAAATTTTGAGAATT
1 TTTTTATTTTTTATATTTTATAAAAATTTTGAGAATT
7882658 TATTTT
1 T-TTTT
7882664 TTAAATATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
36 21 0.57
37 16 0.43
ACGTcount: A:0.29, C:0.01, G:0.06, T:0.63
Consensus pattern (37 bp):
TTTTTATTTTTTATATTTTATAAAAATTTTGAGAATT
Found at i:7882761 original size:18 final size:17
Alignment explanation
Indices: 7882715--7882761 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 17
7882705 TTTTTAGGAA
7882715 TTTTT-AAAATTCAATT
1 TTTTTAAAAATTCAATT
* *
7882731 TTTTTAGAGATTCAAATT
1 TTTTTAAAAATTC-AATT
7882749 TTTTTAAAAATTC
1 TTTTTAAAAATTC
7882762 TACTATTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 5 0.20
17 5 0.20
18 15 0.60
ACGTcount: A:0.36, C:0.06, G:0.04, T:0.53
Consensus pattern (17 bp):
TTTTTAAAAATTCAATT
Found at i:7882928 original size:10 final size:9
Alignment explanation
Indices: 7882883--7882997 Score: 71
Period size: 8 Copynumber: 12.8 Consensus size: 9
7882873 TAATTTTCCG
7882883 AAATTTTTT
1 AAATTTTTT
7882892 GAAA--TTTT
1 -AAATTTTTT
7882900 AAATTAATTTT
1 AAATT--TTTT
*
7882911 -AGTTTTTT
1 AAATTTTTT
7882919 GAAATTTTTT
1 -AAATTTTTT
*
7882929 AATTTTTTT
1 AAATTTTTT
*
7882938 AAA-TTTTA
1 AAATTTTTT
*
7882946 AAATATTTT
1 AAATTTTTT
*
7882955 AGATCTTTTT
1 AAAT-TTTTT
**
7882965 AAA-TTAGT
1 AAATTTTTT
7882973 AATATTTTTT
1 AA-ATTTTTT
7882983 -AATTTTTT
1 AAATTTTTT
7882991 AAATTTT
1 AAATTTT
7882998 AATTTTTTTT
Statistics
Matches: 80, Mismatches: 14, Indels: 23
0.68 0.12 0.20
Matches are distributed among these distances:
7 3 0.04
8 27 0.34
9 24 0.30
10 22 0.28
11 4 0.05
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.61
Consensus pattern (9 bp):
AAATTTTTT
Found at i:7882928 original size:18 final size:18
Alignment explanation
Indices: 7882907--7883005 Score: 64
Period size: 18 Copynumber: 5.7 Consensus size: 18
7882897 TTTAAATTAA
*
7882907 TTTTAGTTTTTTGAAATT
1 TTTTAATTTTTTGAAATT
*
7882925 TTTTAATTTTTTTAAATT
1 TTTTAATTTTTTGAAATT
** * *
7882943 TTAAAATATTTT-AGATCT
1 TTTTAATTTTTTGAAAT-T
* **
7882961 TTTTAAATTAGT-AATATT
1 TTTTAATTTTTTGAA-ATT
7882979 TTTTAATTTTTT-AAA--
1 TTTTAATTTTTTGAAATT
7882994 TTTTAATTTTTT
1 TTTTAATTTTTT
7883006 TTAATGTTAA
Statistics
Matches: 63, Mismatches: 16, Indels: 7
0.73 0.19 0.08
Matches are distributed among these distances:
15 12 0.19
17 4 0.06
18 45 0.71
19 2 0.03
ACGTcount: A:0.30, C:0.01, G:0.04, T:0.65
Consensus pattern (18 bp):
TTTTAATTTTTTGAAATT
Found at i:7882933 original size:45 final size:45
Alignment explanation
Indices: 7882884--7882969 Score: 122
Period size: 45 Copynumber: 1.9 Consensus size: 45
7882874 AATTTTCCGA
*
7882884 AATTTTTTGAAATTTTAAATTAATTTTAG-T-TTTTTGAAATTTTTT
1 AATTTTTTGAAATTTTAAAAT-ATTTTAGATCTTTTT-AAATTTTTT
*
7882929 AATTTTTTTAAATTTTAAAATATTTTAGATCTTTTTAAATT
1 AATTTTTTGAAATTTTAAAATATTTTAGATCTTTTTAAATT
7882970 AGTAATATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
44 7 0.19
45 25 0.68
46 5 0.14
ACGTcount: A:0.34, C:0.01, G:0.05, T:0.60
Consensus pattern (45 bp):
AATTTTTTGAAATTTTAAAATATTTTAGATCTTTTTAAATTTTTT
Found at i:7882944 original size:27 final size:27
Alignment explanation
Indices: 7882887--7882997 Score: 86
Period size: 27 Copynumber: 4.1 Consensus size: 27
7882877 TTTCCGAAAT
* * **
7882887 TTTTTGAAA-TTTTAAATTAATTTTAGT
1 TTTTTGAAATTTTTTAATT-TTTTTAAA
7882914 TTTTTGAAATTTTTTAATTTTTTTAAA
1 TTTTTGAAATTTTTTAATTTTTTTAAA
* * *
7882941 -TTTTAAAATATTTTAGATCTTTTTAAA
1 TTTTTGAAATTTTTTA-ATTTTTTTAAA
**
7882968 TTAGT-AATATTTTTTAA-TTTTTTAAA
1 TTTTTGAA-ATTTTTTAATTTTTTTAAA
7882994 TTTT
1 TTTT
7882998 AATTTTTTTT
Statistics
Matches: 67, Mismatches: 13, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
26 23 0.34
27 27 0.40
28 17 0.25
ACGTcount: A:0.32, C:0.01, G:0.05, T:0.62
Consensus pattern (27 bp):
TTTTTGAAATTTTTTAATTTTTTTAAA
Found at i:7882981 original size:44 final size:45
Alignment explanation
Indices: 7882887--7882988 Score: 111
Period size: 44 Copynumber: 2.3 Consensus size: 45
7882877 TTTCCGAAAT
* ** *
7882887 TTTTTGAAATTTTAAATTAATTTTAGTTTTTTGAAATTTTTTAATT
1 TTTTT-AAATTTTAAAATAATTTTAGTTTTTTGAAATTTAGTAATA
7882933 TTTTTAAATTTTAAAAT-ATTTTAGATCTTTTT-AAA-TTAGTAATA
1 TTTTTAAATTTTAAAATAATTTTAG-T-TTTTTGAAATTTAGTAATA
*
7882977 TTTTTTAATTTT
1 TTTTTAAATTTT
7882989 TTAAATTTTA
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
44 24 0.49
45 15 0.31
46 10 0.20
ACGTcount: A:0.32, C:0.01, G:0.05, T:0.62
Consensus pattern (45 bp):
TTTTTAAATTTTAAAATAATTTTAGTTTTTTGAAATTTAGTAATA
Found at i:7882981 original size:45 final size:46
Alignment explanation
Indices: 7882885--7882994 Score: 120
Period size: 45 Copynumber: 2.4 Consensus size: 46
7882875 ATTTTCCGAA
* **
7882885 ATTTTTTGAAATTTTAAATTAATTTTAGTTTTTTGAAATTTTTTAAT
1 ATTTTTT-AAATTTTAAAATAATTTTAGTTTTTTGAAATTTAGTAAT
7882932 -TTTTTTAAATTTTAAAAT-ATTTTAGATCTTTTT-AAA-TTAGTAAT
1 ATTTTTTAAATTTTAAAATAATTTTAG-T-TTTTTGAAATTTAGTAAT
* *
7882976 ATTTTTTAATTTTTTAAAT
1 ATTTTTTAAATTTTAAAAT
7882995 TTTAATTTTT
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
44 13 0.24
45 31 0.56
46 11 0.20
ACGTcount: A:0.34, C:0.01, G:0.05, T:0.61
Consensus pattern (46 bp):
ATTTTTTAAATTTTAAAATAATTTTAGTTTTTTGAAATTTAGTAAT
Found at i:7883006 original size:16 final size:16
Alignment explanation
Indices: 7882979--7883016 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7882969 TAGTAATATT
7882979 TTTTAA-TTTTTTAAA
1 TTTTAATTTTTTTAAA
*
7882994 TTTTAATTTTTTTTAA
1 TTTTAATTTTTTTAAA
*
7883010 TGTTAAT
1 TTTTAAT
7883017 ATGACAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (16 bp):
TTTTAATTTTTTTAAA
Found at i:7883007 original size:26 final size:25
Alignment explanation
Indices: 7882922--7883010 Score: 106
Period size: 26 Copynumber: 3.4 Consensus size: 25
7882912 GTTTTTTGAA
*
7882922 ATTTTTTAATTTTTTTAAATTTTAAA
1 ATTTTTTAA-TTTTTTAAATTTTAAT
* *
7882948 ATATTTTAGATCTTTTTAAATTAGTAAT
1 ATTTTTTA-AT-TTTTTAAATT-TTAAT
7882976 ATTTTTTAATTTTTTAAATTTTAAT
1 ATTTTTTAATTTTTTAAATTTTAAT
*
7883001 TTTTTTTAAT
1 ATTTTTTAAT
7883011 GTTAATATGA
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
25 13 0.24
26 18 0.33
27 13 0.24
28 10 0.19
ACGTcount: A:0.33, C:0.01, G:0.02, T:0.64
Consensus pattern (25 bp):
ATTTTTTAATTTTTTAAATTTTAAT
Found at i:7883492 original size:16 final size:16
Alignment explanation
Indices: 7883473--7883506 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
7883463 TTTATTATAA
7883473 TTTTAAATTATATTAT
1 TTTTAAATTATATTAT
*
7883489 TTTTATATTATATTAT
1 TTTTAAATTATATTAT
7883505 TT
1 TT
7883507 GTGTCATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTTAAATTATATTAT
Found at i:7884644 original size:28 final size:28
Alignment explanation
Indices: 7884584--7884666 Score: 96
Period size: 29 Copynumber: 2.9 Consensus size: 28
7884574 ACTTTTGGAA
* *
7884584 TTTTTATAAAATTTTCTAAT-TTTTCTG
1 TTTTTATAAAATTTTATAATATTTTATG
7884611 TTTTTATAAAATTTTTATAATATTTTATG
1 TTTTTATAAAA-TTTTATAATATTTTATG
* * *
7884640 TTTTAAAAAAGATTTTATAAAATTTTA
1 TTTTTATAAA-ATTTTATAATATTTTA
7884667 AAATTTTTTA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
27 11 0.23
28 8 0.17
29 28 0.58
30 1 0.02
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (28 bp):
TTTTTATAAAATTTTATAATATTTTATG
Found at i:7884912 original size:19 final size:18
Alignment explanation
Indices: 7884890--7884946 Score: 51
Period size: 20 Copynumber: 2.9 Consensus size: 18
7884880 AAAAAGAAAT
7884890 TAAAAATATAAAAATTTTA
1 TAAAAAT-TAAAAATTTTA
* *
7884909 TAAAAATTCTAAAAAGTTAA
1 TAAAAA-T-TAAAAATTTTA
*
7884929 AAAAAATTAAAATATTTT
1 TAAAAATTAAAA-ATTTT
7884947 GTTAAATAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
18 5 0.17
19 10 0.33
20 15 0.50
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (18 bp):
TAAAAATTAAAAATTTTA
Found at i:7885269 original size:37 final size:37
Alignment explanation
Indices: 7885189--7885270 Score: 96
Period size: 37 Copynumber: 2.2 Consensus size: 37
7885179 ATAAATTTAA
* * *
7885189 TATTTTATTGAAAATTTCAAAAAATTCAAAATATTTT
1 TATTTTATTGAAAATTTCAAAAAACTCAAAAAATTAT
*
7885226 TATTTTATTTAATAATTT-AAAAAACTCAAAAAAATTAT
1 TATTTTATTGAA-AATTTCAAAAAACTC-AAAAAATTAT
7885264 T-TTTTAT
1 TATTTTAT
7885271 ATTATAGGGA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
37 25 0.64
38 14 0.36
ACGTcount: A:0.46, C:0.05, G:0.01, T:0.48
Consensus pattern (37 bp):
TATTTTATTGAAAATTTCAAAAAACTCAAAAAATTAT
Found at i:7885644 original size:24 final size:24
Alignment explanation
Indices: 7885588--7885644 Score: 62
Period size: 26 Copynumber: 2.3 Consensus size: 24
7885578 GACCATTTTT
7885588 TAAATAGAAAATAGATTTTTAAAAA
1 TAAATA-AAAATAGATTTTTAAAAA
* *
7885613 TAAGATAAAATTAGAATTTTTAACAA
1 TAA-ATAAAAATAG-ATTTTTAAAAA
7885639 -AAATAA
1 TAAATAA
7885645 TTTAATTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
24 4 0.14
25 11 0.39
26 13 0.46
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.32
Consensus pattern (24 bp):
TAAATAAAAATAGATTTTTAAAAA
Found at i:7885717 original size:18 final size:17
Alignment explanation
Indices: 7885677--7885739 Score: 54
Period size: 18 Copynumber: 3.5 Consensus size: 17
7885667 GATTAATATT
* *
7885677 TATTTTTTATTATAATA
1 TATTTTTTAGTAAAATA
*
7885694 TGTTTTATTAGTAAAATA
1 TATTTT-TTAGTAAAATA
* *
7885712 TATTTTTAAAATAAAATTA
1 TATTTTT-TAGTAAAA-TA
7885731 TATTTTTTA
1 TATTTTTTA
7885740 AAACTTAAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
17 6 0.17
18 21 0.58
19 9 0.25
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (17 bp):
TATTTTTTAGTAAAATA
Found at i:7885732 original size:19 final size:21
Alignment explanation
Indices: 7885705--7885752 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
7885695 GTTTTATTAG
7885705 TAAAA-TATA-TTTTTAAAA-
1 TAAAATTATATTTTTTAAAAC
7885723 TAAAATTATATTTTTTAAAAC
1 TAAAATTATATTTTTTAAAAC
7885744 TTAAAATTA
1 -TAAAATTA
7885753 AATTAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 5 0.19
19 4 0.15
20 9 0.35
22 8 0.31
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (21 bp):
TAAAATTATATTTTTTAAAAC
Found at i:7887675 original size:2 final size:2
Alignment explanation
Indices: 7887668--7887697 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7887658 TGATTAGTAG
7887668 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7887698 GTTTTGAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7888095 original size:26 final size:26
Alignment explanation
Indices: 7888066--7888116 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
7888056 TAAAATTTCT
7888066 GTTTAAAGTGATATTAATTAATTACG
1 GTTTAAAGTGATATTAATTAATTACG
7888092 GTTTAAAGTGATATTAATTAATTAC
1 GTTTAAAGTGATATTAATTAATTAC
7888117 ACACTGGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.39, C:0.04, G:0.14, T:0.43
Consensus pattern (26 bp):
GTTTAAAGTGATATTAATTAATTACG
Found at i:7888776 original size:3 final size:3
Alignment explanation
Indices: 7888768--7888808 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
7888758 ATTTATTTAT
7888768 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7888809 GCAAATGAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7892231 original size:10 final size:9
Alignment explanation
Indices: 7892209--7892250 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
7892199 CTTTAATTGT
7892209 ATTTATTTA
1 ATTTATTTA
*
7892218 ATTTTTTTA
1 ATTTATTTA
*
7892227 CATTTATCTA
1 -ATTTATTTA
7892237 ATTT-TTTA
1 ATTTATTTA
7892245 ATTTAT
1 ATTTAT
7892251 CTAGTTATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
8 7 0.26
9 13 0.48
10 7 0.26
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.67
Consensus pattern (9 bp):
ATTTATTTA
Found at i:7892248 original size:17 final size:19
Alignment explanation
Indices: 7892209--7892253 Score: 67
Period size: 17 Copynumber: 2.5 Consensus size: 19
7892199 CTTTAATTGT
*
7892209 ATTTATTTAATTTTTTTAC
1 ATTTATCTAATTTTTTTAC
7892228 ATTTATCTAA-TTTTTTA-
1 ATTTATCTAATTTTTTTAC
7892245 ATTTATCTA
1 ATTTATCTA
7892254 GTTATATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 9 0.36
18 7 0.28
19 9 0.36
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (19 bp):
ATTTATCTAATTTTTTTAC
Found at i:7892972 original size:21 final size:20
Alignment explanation
Indices: 7892936--7892975 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
7892926 ATTTAATATT
7892936 AATAAAAAACATAAATAATA
1 AATAAAAAACATAAATAATA
7892956 AATAAATAAAC-TCAAATAAT
1 AATAAA-AAACAT-AAATAAT
7892976 TTTTTATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (20 bp):
AATAAAAAACATAAATAATA
Found at i:7893816 original size:14 final size:14
Alignment explanation
Indices: 7893776--7893806 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
7893766 AAATGATTAA
*
7893776 AAAATTTAGAAATG
1 AAAATTTAAAAATG
7893790 AAAATTTAAAAATG
1 AAAATTTAAAAATG
7893804 AAA
1 AAA
7893807 CTTGTAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.65, C:0.00, G:0.10, T:0.26
Consensus pattern (14 bp):
AAAATTTAAAAATG
Found at i:7896078 original size:15 final size:14
Alignment explanation
Indices: 7896057--7896094 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
7896047 TGGTCTATGA
7896057 TTTTTTTTTGTCTT
1 TTTTTTTTTGTCTT
7896071 TCTTTTTTTT-TCTT
1 T-TTTTTTTTGTCTT
*
7896085 TTATTTTTTG
1 TTTTTTTTTG
7896095 GTAAAATATC
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 7 0.33
14 6 0.29
15 8 0.38
ACGTcount: A:0.03, C:0.08, G:0.05, T:0.84
Consensus pattern (14 bp):
TTTTTTTTTGTCTT
Found at i:7907860 original size:84 final size:85
Alignment explanation
Indices: 7907694--7907869 Score: 214
Period size: 84 Copynumber: 2.1 Consensus size: 85
7907684 AGATGAAACG
** *
7907694 AAAAACTTTCCACAATTAGTTTTTTTCTAAATGTCATGCTCATTGGTTGTTACCACATTTGCTTT
1 AAAAACTTTCCACAATTAGTTCATTTATAAATGTCAT-CTCATTGGTTGTTACCACATTTGCTTT
*
7907759 ATTGGTATTTAGTGGAATAAC
65 ATTGGTATTTAGCGGAATAAC
* * ** *
7907780 AAAAACTTTCCACAATTTGTTCATTTATAAGTGTCAT-TGGTT-GTTGATTATCACATTTGCTTT
1 AAAAACTTTCCACAATTAGTTCATTTATAAATGTCATCTCATTGGTTG-TTACCACATTTGCTTT
*
7907843 ATTGGTACTTT-GCGGAATAAG
65 ATTGGTA-TTTAGCGGAATAAC
7907864 AAAAAC
1 AAAAAC
7907870 AATAACTTTC
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
83 4 0.05
84 39 0.50
85 3 0.04
86 32 0.41
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.41
Consensus pattern (85 bp):
AAAAACTTTCCACAATTAGTTCATTTATAAATGTCATCTCATTGGTTGTTACCACATTTGCTTTA
TTGGTATTTAGCGGAATAAC
Found at i:7914386 original size:20 final size:21
Alignment explanation
Indices: 7914351--7914392 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
7914341 GACATTTTTT
7914351 ATGCTTTAGCAGGGTTTCACAA
1 ATGCTTTAGCAGGGTTTC-CAA
7914373 ATGC-TTAG-AGGGTTTCCAA
1 ATGCTTTAGCAGGGTTTCCAA
7914392 A
1 A
7914393 GGACTAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 4 0.20
20 8 0.40
21 4 0.20
22 4 0.20
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.31
Consensus pattern (21 bp):
ATGCTTTAGCAGGGTTTCCAA
Found at i:7916033 original size:152 final size:152
Alignment explanation
Indices: 7915830--7916218 Score: 388
Period size: 152 Copynumber: 2.5 Consensus size: 152
7915820 ATGTAGTAGC
* * *
7915830 AAATTTACATTTTTACCCTTTTACAACATAAAAAGTTCTAAAAACACATAAA-TCATAATATTTT
1 AAATTAACATTTTTACCATTTTACAACAGAAAAAGTTCTAAAAACACATAAACT-ATAATATTTT
* * * * * *
7915894 CACACATACCAAGCATGATAGCCAAATTCAATCATTCAAACAAGTTTAATATCATTTATTCGAGC
65 CACACATACCAAGCATAACAGCCAAATTCAATCATCCAAACAAGTTTAATACCATGTATTCAAGC
*
7915959 TATCTATGCTATTATATAGCAGT
130 TATCTAAGCTATTATATAGCAGT
** * *
7915982 AAATTAACATTTTTACCATTTTACAGTAGAAAAAG-TCTTAAAACCATATAAACTATAATATTTT
1 AAATTAACATTTTTACCATTTTACAACAGAAAAAGTTC-TAAAAACACATAAACTATAATATTTT
* * ** * *
7916046 CACATATATCAAGTGTAACAGCTAAGTTCAATCATCCAAACAAGTTTAATACCATGTATTCAAGC
65 CACACATACCAAGCATAACAGCCAAATTCAATCATCCAAACAAGTTTAATACCATGTATTCAAGC
*
7916111 TATCTAAGCTATTAAAATAGAAATATAGCAGC
130 TATCTAAGCTA-T----T----ATATAGCAGT
* * * * * * * *
7916143 AAATTTATATTTTTACCCTTTTACGACATAAAAAGTCCT-AAAACACATAAGCTGTAATATTTTC
1 AAATTAACATTTTTACCATTTTACAACAGAAAAAGTTCTAAAAACACATAAACTATAATATTTTC
*
7916207 ACACATATCAAG
66 ACACATACCAAG
7916219 TATAGTAGCC
Statistics
Matches: 191, Mismatches: 34, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
151 2 0.01
152 115 0.60
153 2 0.01
157 1 0.01
160 32 0.17
161 38 0.20
162 1 0.01
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (152 bp):
AAATTAACATTTTTACCATTTTACAACAGAAAAAGTTCTAAAAACACATAAACTATAATATTTTC
ACACATACCAAGCATAACAGCCAAATTCAATCATCCAAACAAGTTTAATACCATGTATTCAAGCT
ATCTAAGCTATTATATAGCAGT
Found at i:7916448 original size:320 final size:313
Alignment explanation
Indices: 7915801--7916476 Score: 730
Period size: 320 Copynumber: 2.1 Consensus size: 313
7915791 TATATTCGAG
* * * *
7915801 CTAAGCTATTAAAACAGAAATGTAGTAGCAAATTTACATTTTTACCCTTTTACAACATAAAAAGT
1 CTAAGCTATTAAAATAGAAATATAGCAGCAAATTTATATTTTTACCCTTTTACAACATAAAAAGT
* *
7915866 TCTAAAAACACATAAATCATAATATTTTCACACATACCAAGCATGATAGCCAAATTCAATCATTC
66 CCTAAAAACACATAAATCATAATATTTTCACACATACCAAGCATGATAGCCAAATTCAACCATTC
* * * * *
7915931 AAACAAGTTTAATATCATTTATTCGAGCTATCTATGCTATTATATAGCAGTAAATTAACATTTTT
131 AAACAAGTTTAATATCATATATTCAAGCTATCTATGCTATAATATAACAGCAAATTAACATTTTT
* * ** * * * * **
7915996 ACCATTTTACAGTAGAAAAAGTCTTAAAACCATATAAACTATAATATTTTCACATATATCAAGTG
196 ACCATTTTACAGTACAAAAAATCCCAAAAACACATAAACCATAATATTTTCACATATACCAAGCA
* * * * *
7916061 TAACAGCTAAGTTCAATCATCCAAACAAGTTTAATACCATGTATTCAAGCTAT
261 TAACAGCCAAGTTCAACCATCCAAACAAATTTAATAACATGCATTCAAGCTAT
*
7916114 CTAAGCTATTAAAATAGAAATATAGCAGCAAATTTATATTTTTACCCTTTTACGACATAAAAAGT
1 CTAAGCTATTAAAATAGAAATATAGCAGCAAATTTATATTTTTACCCTTTTACAACATAAAAAGT
* * * * * * **
7916179 CCT-AAAACACAT-AAGCTGTAATATTTTCACACATATCAAGTAT-AGTAGCCTAGTTTGACCAT
66 CCTAAAAACACATAAATC-ATAATATTTTCACACATACCAAGCATGA-TAGCCAAATTCAACCAT
* * *
7916241 TCGAATAA-TTTAATATCATATATTCAAGCTATCTACGTTGCTAAAATAGAAATATAATAGCAAA
129 TCAAACAAGTTTAATATCATATATTCAAGCTATCTA---TGCT---AT---AATATAACAGCAAA
* * * * ** *
7916305 TTTATATTTTTGCCCTTTTATGGTACAAAAAATCCCAAAAATACATAAACCATAATATTTTCACA
185 TTAACATTTTTACCATTTTACAGTACAAAAAATCCCAAAAACACATAAACCATAATATTTTCACA
* * * * * *
7916370 TATACCAAGCATGATAGCCAAGTTTAACCATTCAGACAAATTTAATAATATGCATTCAAGCTAT
250 TATACCAAGCATAACAGCCAAGTTCAACCATCCAAACAAATTTAATAACATGCATTCAAGCTAT
* * * *
7916434 CTAAGTTGTTAAAATAGAAATATAACAGTAAATTTATATTTTT
1 CTAAGCTATTAAAATAGAAATATAGCAGCAAATTTATATTTTT
7916477 GCTATTTTAA
Statistics
Matches: 297, Mismatches: 55, Indels: 15
0.81 0.15 0.04
Matches are distributed among these distances:
311 29 0.10
312 50 0.17
313 62 0.21
314 4 0.01
317 2 0.01
320 150 0.51
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.33
Consensus pattern (313 bp):
CTAAGCTATTAAAATAGAAATATAGCAGCAAATTTATATTTTTACCCTTTTACAACATAAAAAGT
CCTAAAAACACATAAATCATAATATTTTCACACATACCAAGCATGATAGCCAAATTCAACCATTC
AAACAAGTTTAATATCATATATTCAAGCTATCTATGCTATAATATAACAGCAAATTAACATTTTT
ACCATTTTACAGTACAAAAAATCCCAAAAACACATAAACCATAATATTTTCACATATACCAAGCA
TAACAGCCAAGTTCAACCATCCAAACAAATTTAATAACATGCATTCAAGCTAT
Found at i:7916455 original size:161 final size:157
Alignment explanation
Indices: 7916011--7916496 Score: 503
Period size: 160 Copynumber: 3.0 Consensus size: 157
7916001 TTTACAGTAG
* * * * * * *
7916011 AAAAAGTCTTAAAACCATATAAACTATAATATTTTCACATATATCAAGTGTAACAGCTAAGTTCA
1 AAAAAGTC-CAAAAACACATAAACTATAATATTTTCACATATATCAAGTAT-ATAGCCAAGTTTA
* * * * ** * * *
7916076 ATCATCCAAACAAGTTTAATACCATGTATTCAAGCTATCTAAGCTATTAAAATAGAAATATAGCA
64 ACCATTCAGACAAATTTAATAATATG-ATTCAAGCTATCTAAGTTGTTAAAATAGAAATATAACA
* *
7916141 GCAAATTTATATTTTTACCCTTTTACGACA
128 GCAAATTTATATTTTTGCCCTTTTAGGACA
* * * * * *
7916171 TAAAAAGTCCTAAAACACATAAGCTGTAATATTTTCACACATATCAAGTATAGTAGCCTAGTTTG
1 -AAAAAGTCCAAAAACACATAAACTATAATATTTTCACATATATCAAGTATA-TAGCCAAGTTTA
* *
7916236 ACCATTC-GA-ATAATTTAATATCATAT-ATTCAAGCTATCTACGTTGCTAAAATAGAAATATAA
64 ACCATTCAGACA-AATTTAATA--ATATGATTCAAGCTATCTAAGTTGTTAAAATAGAAATATAA
*
7916298 TAGCAAATTTATATTTTTGCCCTTTTATGGTACA
126 CAGCAAATTTATATTTTTGCCCTTTTA-GG-ACA
* * * *
7916332 AAAAA-TCCCAAAAATACATAAACCATAATATTTTCACATATACCAAGCATGATAGCCAAGTTTA
1 AAAAAGT-CCAAAAACACATAAACTATAATATTTTCACATATATCAAGTAT-ATAGCCAAGTTTA
7916396 ACCATTCAGACAAATTTAATAATATGCATTCAAGCTATCTAAGTTGTTAAAATAGAAATATAACA
64 ACCATTCAGACAAATTTAATAATATG-ATTCAAGCTATCTAAGTTGTTAAAATAGAAATATAACA
* **
7916461 GTAAATTTATATTTTTGCTATTTTAAGGCACA
128 GCAAATTTATATTTTTGCCCTTTT-AGG-ACA
7916493 AAAA
1 AAAA
7916497 GTCATTTATA
Statistics
Matches: 268, Mismatches: 44, Indels: 26
0.79 0.13 0.08
Matches are distributed among these distances:
158 1 0.00
159 71 0.26
160 104 0.39
161 90 0.34
162 2 0.01
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.33
Consensus pattern (157 bp):
AAAAAGTCCAAAAACACATAAACTATAATATTTTCACATATATCAAGTATATAGCCAAGTTTAAC
CATTCAGACAAATTTAATAATATGATTCAAGCTATCTAAGTTGTTAAAATAGAAATATAACAGCA
AATTTATATTTTTGCCCTTTTAGGACA
Found at i:7916657 original size:180 final size:180
Alignment explanation
Indices: 7916331--7916678 Score: 438
Period size: 180 Copynumber: 1.9 Consensus size: 180
7916321 TTTATGGTAC
* * * *
7916331 AAAAAATCCCAAAAATACATAAACCATAATATTTTCACATATACCAAGCATGATAGCCAAGTTTA
1 AAAAAATCCCAAAAACACATAAACCATAATATTTTCACATATACCAAGCATGACAACCAAGTTCA
* *
7916396 ACCATTCAGACAAATTTAATAATATGCATTCAAGCTATCTAAGTTGTTAAAATAGAAATATAACA
66 ACCACTCAGACAAATTTAATAATATGCACTCAAGCTATCTAAGTTGTTAAAATAGAAATATAACA
* * *
7916461 GTAAATTTATATTTTTGCTATTTTAA-GGCACAAAAAGTCATTTATAGCAT
131 GCAAATTTACATTTTTGCT-CTTTAACGGCACAAAAAGTCATTTATAGCAT
* * * * * * *
7916511 AAAAAGTCCCTAAAACATATAAATCATAATATTTTCACATATACCAAGCATGGCAACTATGTTCA
1 AAAAAATCCCAAAAACACATAAACCATAATATTTTCACATATACCAAGCATGACAACCAAGTTCA
*
7916576 ACCACTC-GA-ATAAGTTTAAT-ATCATGTACTCAAGCTATCTAAGTTGTTAAAATAGAAATATA
66 ACCACTCAGACA-AA-TTTAATAAT-ATGCACTCAAGCTATCTAAGTTGTTAAAATAGAAATATA
*
7916638 GA-AGCAAATATT-CATTTTTGCTCTTTAACGGTACAAAAAGT
128 -ACAGCAAAT-TTACATTTTTGCTCTTTAACGGCACAAAAAGT
7916679 GCTAAAAACA
Statistics
Matches: 144, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
178 1 0.01
179 11 0.08
180 129 0.90
181 3 0.02
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.31
Consensus pattern (180 bp):
AAAAAATCCCAAAAACACATAAACCATAATATTTTCACATATACCAAGCATGACAACCAAGTTCA
ACCACTCAGACAAATTTAATAATATGCACTCAAGCTATCTAAGTTGTTAAAATAGAAATATAACA
GCAAATTTACATTTTTGCTCTTTAACGGCACAAAAAGTCATTTATAGCAT
Found at i:7916833 original size:159 final size:160
Alignment explanation
Indices: 7916511--7916835 Score: 340
Period size: 159 Copynumber: 2.0 Consensus size: 160
7916501 TTTATAGCAT
* * *
7916511 AAAAAGTCCCTAAAACATATAAATCATAATATTTTCACATATACCAAGCATGGCAACTATGTTCA
1 AAAAAGTCCCTAAAACACATAAACCATAATATTTTCACATATACCAAGCATGGCAACAATGTTCA
* * * * **
7916576 ACCACTCGAATAAGTTTAATATCATGTACTCAAGCTATCTAAGTTGTTAAAATAGAAATATAGAA
66 ACAACTCGAACAAGGTTAATATCATGTACTAAAGCTATCTAAACTGTTAAAATAGAAATATAGAA
** * *
7916641 GCAAATATTCATTTTTGCTCTTTAACGGTAC
131 -CAAATATTCATTTTCACCCTTTAACGGCAC
* * **
7916672 AAAAAGT-GCTAAAA-ACATAAACCATAATATTTTCACATATATCAAGTGTGGCAATCAAAT-TT
1 AAAAAGTCCCTAAAACACATAAACCATAATATTTTCACATATACCAAGCATGGCAA-C-AATGTT
* * * *
7916734 -AACAATTCGGACAAGGTTAATATCATGTATTAAAGCTATTTAAACTGTTAAAATAGAAATATAG
64 CAACAACTCGAACAAGGTTAATATCATGTACTAAAGCTATCTAAACTGTTAAAATAGAAATATAG
*
7916798 CAA-AAA-ATTTATAATTTCACCCTTTGAA-GGCAC
129 -AACAAATATTCAT--TTTCACCCTTT-AACGGCAC
7916831 AAAAA
1 AAAAA
7916836 CTCTTAAAAA
Statistics
Matches: 136, Mismatches: 22, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
157 5 0.04
158 3 0.02
159 106 0.78
160 13 0.10
161 9 0.07
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.30
Consensus pattern (160 bp):
AAAAAGTCCCTAAAACACATAAACCATAATATTTTCACATATACCAAGCATGGCAACAATGTTCA
ACAACTCGAACAAGGTTAATATCATGTACTAAAGCTATCTAAACTGTTAAAATAGAAATATAGAA
CAAATATTCATTTTCACCCTTTAACGGCAC
Found at i:7917916 original size:2 final size:2
Alignment explanation
Indices: 7917909--7917946 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
7917899 CTCTAAATTC
7917909 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7917947 AAACTCTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7920140 original size:19 final size:19
Alignment explanation
Indices: 7920116--7920155 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
7920106 CTCCTTAATC
7920116 TTGCTTTGAAGAATCATGA
1 TTGCTTTGAAGAATCATGA
*
7920135 TTGCTTTGAGGAATCATGA
1 TTGCTTTGAAGAATCATGA
7920154 TT
1 TT
7920156 TCTTCTTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.40
Consensus pattern (19 bp):
TTGCTTTGAAGAATCATGA
Found at i:7921576 original size:2 final size:2
Alignment explanation
Indices: 7921569--7921594 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7921559 CATACTAATT
7921569 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
7921595 CAAAAAAGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7921738 original size:22 final size:22
Alignment explanation
Indices: 7921712--7921770 Score: 59
Period size: 22 Copynumber: 2.6 Consensus size: 22
7921702 CAATTAAATA
7921712 AACAATTATTACATAATCAAATT
1 AACAATTATTACATAATC-AATT
*
7921735 -ACAATTTTTGA-ATAATCAATT
1 AACAATTATT-ACATAATCAATT
*
7921756 AACAAATTATAACAT
1 AAC-AATTATTACAT
7921771 GACTGAACAA
Statistics
Matches: 29, Mismatches: 3, Indels: 8
0.73 0.08 0.20
Matches are distributed among these distances:
21 4 0.14
22 17 0.59
23 8 0.28
ACGTcount: A:0.51, C:0.12, G:0.02, T:0.36
Consensus pattern (22 bp):
AACAATTATTACATAATCAATT
Found at i:7925302 original size:16 final size:16
Alignment explanation
Indices: 7925281--7925327 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
7925271 TAAAAAGTTA
7925281 AAATATTATAAAAAAT
1 AAATATTATAAAAAAT
7925297 AAATATT-TAAAAGAA-
1 AAATATTATAAAA-AAT
7925312 AAA-A--ATAAAAAAT
1 AAATATTATAAAAAAT
7925325 AAA
1 AAA
7925328 GAGAAAAATC
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
12 2 0.07
13 8 0.29
14 1 0.04
15 8 0.29
16 9 0.32
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (16 bp):
AAATATTATAAAAAAT
Found at i:7925328 original size:19 final size:21
Alignment explanation
Indices: 7925304--7925348 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 21
7925294 AATAAATATT
*
7925304 TAAA-AGAAAAAAATAAAAAA
1 TAAAGAGAAAAACATAAAAAA
7925324 TAAAGAGAAAAATCATAAAAAA
1 TAAAGAGAAAAA-CATAAAAAA
7925346 TAA
1 TAA
7925349 CCTAACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.18
21 7 0.32
22 11 0.50
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.13
Consensus pattern (21 bp):
TAAAGAGAAAAACATAAAAAA
Found at i:7925332 original size:21 final size:20
Alignment explanation
Indices: 7925290--7925348 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 20
7925280 AAAATATTAT
**
7925290 AAAAAATAAATATTTAAAAGA
1 AAAAAATAAA-AAATAAAAGA
7925311 AAAAAATAAAAAATAAAGAGA
1 AAAAAATAAAAAATAAA-AGA
*
7925332 AAAATCATAAAAAATAA
1 AAAA-AATAAAAAATAA
7925349 CCTAACAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 5 0.15
21 17 0.52
22 11 0.33
ACGTcount: A:0.76, C:0.02, G:0.05, T:0.17
Consensus pattern (20 bp):
AAAAAATAAAAAATAAAAGA
Found at i:7929121 original size:23 final size:23
Alignment explanation
Indices: 7929068--7929121 Score: 54
Period size: 24 Copynumber: 2.3 Consensus size: 23
7929058 ATGAAGCTAG
7929068 TTTAAAAAAAAAAAAAAAAAACT
1 TTTAAAAAAAAAAAAAAAAAACT
* * * * *
7929091 TTCCAAAATAAAAGAAGAAAAGCT
1 TT-TAAAAAAAAAAAAAAAAAACT
7929115 TTTAAAA
1 TTTAAAA
7929122 GTGGGGGGGG
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
23 6 0.25
24 18 0.75
ACGTcount: A:0.67, C:0.07, G:0.06, T:0.20
Consensus pattern (23 bp):
TTTAAAAAAAAAAAAAAAAAACT
Found at i:7933342 original size:31 final size:29
Alignment explanation
Indices: 7933295--7933359 Score: 94
Period size: 31 Copynumber: 2.2 Consensus size: 29
7933285 ATTATTAGTA
* *
7933295 AAATAAATTATAATAATTTATTAATATATT
1 AAATTAATTATAATAATTTATTAATA-AAT
7933325 AAATTAATTAATAATAATTTATTAATAAAT
1 AAATTAATT-ATAATAATTTATTAATAAAT
7933355 AAATT
1 AAATT
7933360 TTTTAAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 15 0.47
31 17 0.53
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (29 bp):
AAATTAATTATAATAATTTATTAATAAAT
Found at i:7937634 original size:2 final size:2
Alignment explanation
Indices: 7937627--7937668 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
7937617 AATTGATCTT
*
7937627 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA GA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7937669 AGTAAAGTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:7942294 original size:19 final size:20
Alignment explanation
Indices: 7942258--7942295 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
7942248 TTTTGAAGAT
* *
7942258 ATTATATAATTATTTTATAG
1 ATTATATAATAATATTATAG
7942278 ATTAT-TAATAATATTATA
1 ATTATATAATAATATTATA
7942296 ATATTCAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (20 bp):
ATTATATAATAATATTATAG
Found at i:7942977 original size:3 final size:3
Alignment explanation
Indices: 7942969--7942996 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
7942959 CTTTCAACTC
7942969 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
7942997 TCTCTTTCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:7948728 original size:59 final size:59
Alignment explanation
Indices: 7948630--7949036 Score: 552
Period size: 59 Copynumber: 6.7 Consensus size: 59
7948620 TTTTTTGTAG
* **
7948630 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTGAAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCTAA
*
7948689 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAATTTTGATTT-TCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTT-ATTTCT-AA
* *
7948749 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGGAAATTTATTTTTCTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTA--TTTC---TAA
* *
7948813 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTG-AAATTTATTTCTGA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTTGAAAATTTATTTCTAA
7948872 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTGAAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCTAA
* * *
7948929 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTATTTTGGAAATTCATTTTTCTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTT-TTTT-GAAA---ATTTAT-TTCTAA
*
7948994 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
7949037 TGGAATTTTT
Statistics
Matches: 315, Mismatches: 15, Indels: 31
0.87 0.04 0.09
Matches are distributed among these distances:
56 7 0.02
57 47 0.15
59 87 0.28
60 58 0.18
61 7 0.02
62 4 0.01
64 52 0.17
65 53 0.17
ACGTcount: A:0.33, C:0.14, G:0.08, T:0.46
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCTAA
Found at i:7949037 original size:183 final size:183
Alignment explanation
Indices: 7948617--7949038 Score: 678
Period size: 183 Copynumber: 2.3 Consensus size: 183
7948607 GGAAAGAATG
* **
7948617 ATTTTT-TTTGTAGGGAAAATTGATACTTTCAACTTTT-CCTCAAAAA-CCTTTTTTTTGAAAAT
1 ATTTTTCTTT-TAAGGAAAATTGATACTTTCAACTTTTCCCT-AAAAATATTTTTTTTTGAAAAT
*
7948679 TTATTTCTAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAATTTTGATT
64 TTATTTCTAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGAAAATTTGATT
*
7948744 TTCAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGGAAATTT
128 TTCAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGGAAATTC
7948800 ATTTTTCTTTTAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTG-AAATTT
1 ATTTTTCTTTTAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAAAATTT
*
7948864 ATTTCTGAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTGAAAATTT-A-TTTC
66 ATTTCTAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTGATTTTC
* *
7948926 TAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTATTTTGGAAATTC
131 -AAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTT-TTTTGGAAATTC
7948981 ATTTTTCTTTTAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTG
1 ATTTTTCTTTTAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTG
7949039 GAATTTTTTA
Statistics
Matches: 226, Mismatches: 8, Indels: 12
0.92 0.03 0.05
Matches are distributed among these distances:
179 4 0.02
180 40 0.18
181 82 0.36
183 85 0.38
184 15 0.07
ACGTcount: A:0.32, C:0.13, G:0.08, T:0.46
Consensus pattern (183 bp):
ATTTTTCTTTTAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAAAATTT
ATTTCTAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTGATTTTC
AAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGGAAATTC
Found at i:7949574 original size:20 final size:20
Alignment explanation
Indices: 7949546--7949593 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
7949536 TGGCCGGAAG
*
7949546 TTCGCCGGTTTCTGGGATTA
1 TTCGTCGGTTTCTGGGATTA
* *
7949566 TTCGTCGGTTTCTTGGATTC
1 TTCGTCGGTTTCTGGGATTA
7949586 TTCGTCGG
1 TTCGTCGG
7949594 AAACTGGGCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.06, C:0.21, G:0.29, T:0.44
Consensus pattern (20 bp):
TTCGTCGGTTTCTGGGATTA
Found at i:7950123 original size:16 final size:15
Alignment explanation
Indices: 7950097--7950171 Score: 59
Period size: 16 Copynumber: 4.9 Consensus size: 15
7950087 ATATAATTAT
7950097 ATAAGTAAAATACAAA
1 ATAA-TAAAATACAAA
7950113 ATGAATAAAATA-AAA
1 AT-AATAAAATACAAA
7950128 A-AGATAAAA-A-AAA
1 ATA-ATAAAATACAAA
*
7950141 ATATATATATATACATAA
1 ATA-ATA-AAATACA-AA
7950159 ATAATAAAATACA
1 ATAATAAAATACA
7950172 CATAAATATT
Statistics
Matches: 49, Mismatches: 3, Indels: 14
0.74 0.05 0.21
Matches are distributed among these distances:
13 6 0.12
14 10 0.20
15 6 0.12
16 16 0.33
17 6 0.12
18 5 0.10
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.23
Consensus pattern (15 bp):
ATAATAAAATACAAA
Found at i:7955992 original size:39 final size:39
Alignment explanation
Indices: 7955949--7956027 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
7955939 AAATTACTAT
7955949 TACTATAGTTATAAACAAGTAAAACTATTTGCTGTCATA
1 TACTATAGTTATAAACAAGTAAAACTATTTGCTGTCATA
7955988 TACTATAGTTATAAACAAGTAAAACTATTTGCTGTCATA
1 TACTATAGTTATAAACAAGTAAAACTATTTGCTGTCATA
7956027 T
1 T
7956028 CTAAATAAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.41, C:0.13, G:0.10, T:0.37
Consensus pattern (39 bp):
TACTATAGTTATAAACAAGTAAAACTATTTGCTGTCATA
Found at i:7958831 original size:12 final size:13
Alignment explanation
Indices: 7958804--7958836 Score: 50
Period size: 12 Copynumber: 2.5 Consensus size: 13
7958794 TAAACTTATC
7958804 AGAACAAAGTAAAA
1 AGAA-AAAGTAAAA
7958818 AGAAAAAG-AAAA
1 AGAAAAAGTAAAA
7958830 AGAAAAA
1 AGAAAAA
7958837 ATCCAACCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 11 0.58
13 4 0.21
14 4 0.21
ACGTcount: A:0.79, C:0.03, G:0.15, T:0.03
Consensus pattern (13 bp):
AGAAAAAGTAAAA
Found at i:7960675 original size:19 final size:20
Alignment explanation
Indices: 7960652--7960711 Score: 68
Period size: 19 Copynumber: 2.9 Consensus size: 20
7960642 TTAAAAAATT
7960652 TTCTAAAAATTCTAAAAAAA
1 TTCTAAAAATTCTAAAAAAA
*
7960672 -TCTAAAAATTTTAGAAAAAAA
1 TTCTAAAAATTCT--AAAAAAA
7960693 TTCTAAAGTAATTCTAAAA
1 TTCTAAA--AATTCTAAAA
7960712 CTTTATAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
19 11 0.33
21 7 0.21
22 10 0.30
24 5 0.15
ACGTcount: A:0.57, C:0.08, G:0.03, T:0.32
Consensus pattern (20 bp):
TTCTAAAAATTCTAAAAAAA
Found at i:7960697 original size:32 final size:31
Alignment explanation
Indices: 7960656--7960734 Score: 90
Period size: 32 Copynumber: 2.5 Consensus size: 31
7960646 AAAATTTTCT
*
7960656 AAAAATTCTAAAAAAATCTAAAAATTTTAGAA
1 AAAAATTCTAAAAAAATCT-AAAACTTTAGAA
* * *
7960688 AAAAATTCTAAAGTAATTCTAAAACTTTATAA
1 AAAAATTCTAAA-AAAATCTAAAACTTTAGAA
7960720 AAAAA-T-TAAAAAAAT
1 AAAAATTCTAAAAAAAT
7960735 TTTCTAAAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
29 3 0.08
30 4 0.10
31 1 0.03
32 27 0.68
33 5 0.12
ACGTcount: A:0.62, C:0.06, G:0.03, T:0.29
Consensus pattern (31 bp):
AAAAATTCTAAAAAAATCTAAAACTTTAGAA
Found at i:7960762 original size:32 final size:31
Alignment explanation
Indices: 7960704--7960768 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
7960694 TCTAAAGTAA
7960704 TTCTAAAACTTTATAAAAAAATTAAAAAAATT
1 TTCTAAAACTTTATAAAAAAATT-AAAAAATT
* *
7960736 TTCTAAAACTTT-TTAAAAACTCTAAAAAATT
1 TTCTAAAACTTTATAAAAAAAT-TAAAAAATT
7960767 TT
1 TT
7960769 GAAACTTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
31 17 0.57
32 13 0.43
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.38
Consensus pattern (31 bp):
TTCTAAAACTTTATAAAAAAATTAAAAAATT
Found at i:7960874 original size:32 final size:31
Alignment explanation
Indices: 7960822--7960915 Score: 102
Period size: 32 Copynumber: 2.9 Consensus size: 31
7960812 AAAACTCTCC
*
7960822 AAAA-TAAAAAAATCAAATTTTAATAAAAATT
1 AAAATTAAAAAAA-CAAATTTTAATAAAAATA
* *
7960853 AAAATTAAAAAAAGAATATTTTTA-AAAAATA
1 AAAATTAAAAAAACAA-ATTTTAATAAAAATA
7960884 AAAATATAAAAAACACAAAATTTTAATAAAAA
1 AAAAT-TAAAAAA-AC-AAATTTTAATAAAAA
7960916 AATCCCAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
31 17 0.33
32 21 0.40
33 7 0.13
34 7 0.13
ACGTcount: A:0.69, C:0.03, G:0.01, T:0.27
Consensus pattern (31 bp):
AAAATTAAAAAAACAAATTTTAATAAAAATA
Found at i:7960925 original size:11 final size:11
Alignment explanation
Indices: 7960922--7960946 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7960912 AAAAAATCCC
7960922 AAAAATTCCAA
1 AAAAATTCCAA
7960933 AAAAATTCCAA
1 AAAAATTCCAA
7960944 AAA
1 AAA
7960947 TTTAGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.16, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAATTCCAA
Found at i:7960956 original size:20 final size:20
Alignment explanation
Indices: 7960911--7960948 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7960901 AAATTTTAAT
7960911 AAAAAAATCCCAAAAATTCC
1 AAAAAAATCCCAAAAATTCC
*
7960931 AAAAAAATTCCAAAAATT
1 AAAAAAATCCCAAAAATT
7960949 TAGAAAAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.63, C:0.18, G:0.00, T:0.18
Consensus pattern (20 bp):
AAAAAAATCCCAAAAATTCC
Found at i:7961015 original size:17 final size:15
Alignment explanation
Indices: 7960992--7961034 Score: 52
Period size: 14 Copynumber: 2.7 Consensus size: 15
7960982 TCATAACTTT
7960992 ATAAAAAATCTTAAA
1 ATAAAAAATCTTAAA
7961007 ACTTAAAAAAAT-TTAAA
1 A--T-AAAAAATCTTAAA
7961024 ATAAAAAATCT
1 ATAAAAAATCT
7961035 AAACTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
14 7 0.29
15 3 0.12
17 7 0.29
18 7 0.29
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (15 bp):
ATAAAAAATCTTAAA
Found at i:7961053 original size:21 final size:21
Alignment explanation
Indices: 7961026--7961086 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
7961016 AATTTAAAAT
* *
7961026 AAAAAATCTAAACTTTTTTTG
1 AAAAAATCTAAAATTTTTTTA
* *
7961047 TAAAAATTTAAAATTTTTTTA
1 AAAAAATCTAAAATTTTTTTA
*
7961068 AAAAAATTCTAAAAATTTT
1 AAAAAA-TCTAAAATTTTT
7961087 CACTTTTTAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 22 0.69
22 10 0.31
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (21 bp):
AAAAAATCTAAAATTTTTTTA
Found at i:7961268 original size:9 final size:10
Alignment explanation
Indices: 7961242--7961268 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
7961232 AATTATTTAA
7961242 AAATTTTTGG
1 AAATTTTTGG
7961252 AAATTTTTGG
1 AAATTTTTGG
7961262 AAATTTT
1 AAATTTT
7961269 AAAAACTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (10 bp):
AAATTTTTGG
Found at i:7961422 original size:9 final size:9
Alignment explanation
Indices: 7961408--7961461 Score: 54
Period size: 9 Copynumber: 5.8 Consensus size: 9
7961398 TAAAGTTTGA
7961408 AATTTTTAG
1 AATTTTTAG
*
7961417 AATTTTTTAT
1 AA-TTTTTAG
*
7961427 AAATTTTAG
1 AATTTTTAG
*
7961436 AATTTTTTG
1 AATTTTTAG
*
7961445 ATATTTTAAG
1 A-ATTTTTAG
7961455 AATTTTT
1 AATTTTT
7961462 TAAATAGTTT
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
9 20 0.57
10 15 0.43
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.59
Consensus pattern (9 bp):
AATTTTTAG
Found at i:7961433 original size:19 final size:17
Alignment explanation
Indices: 7961411--7961463 Score: 70
Period size: 19 Copynumber: 2.9 Consensus size: 17
7961401 AGTTTGAAAT
7961411 TTTTAGAATTTTTTATAAA
1 TTTTAGAATTTTTTAT--A
7961430 TTTTAGAATTTTTTGATA
1 TTTTAGAATTTTTT-ATA
7961448 TTTTAAGAATTTTTTA
1 TTTT-AGAATTTTTTA
7961464 AATAGTTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.19
19 24 0.75
20 2 0.06
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (17 bp):
TTTTAGAATTTTTTATA
Found at i:7961439 original size:28 final size:29
Alignment explanation
Indices: 7961392--7961451 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 29
7961382 TTTTAAAAAA
7961392 TTTTTATAAAGTTTGAAATTTTTAGA-AT
1 TTTTTATAAAGTTTGAAATTTTTAGATAT
* *
7961420 TTTTTATAAA-TTTTAGAATTTTTTGATAT
1 TTTTTATAAAGTTTGA-AATTTTTAGATAT
7961449 TTT
1 TTT
7961452 AAGAATTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 4 0.14
28 19 0.68
29 5 0.18
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (29 bp):
TTTTTATAAAGTTTGAAATTTTTAGATAT
Found at i:7961488 original size:33 final size:31
Alignment explanation
Indices: 7961438--7961499 Score: 88
Period size: 33 Copynumber: 1.9 Consensus size: 31
7961428 AATTTTAGAA
*
7961438 TTTTTTGATATTTTAAGAATTTTTTAAATAG
1 TTTTTTGATATTTTAAGAATTTTATAAATAG
*
7961469 TTTTTTTATAATTTATAAGAATTTTATAAAT
1 TTTTTTGAT-ATTT-TAAGAATTTTATAAAT
7961500 TTTTAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 8 0.30
32 4 0.15
33 15 0.56
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (31 bp):
TTTTTTGATATTTTAAGAATTTTATAAATAG
Found at i:7961581 original size:39 final size:40
Alignment explanation
Indices: 7961486--7961583 Score: 112
Period size: 39 Copynumber: 2.5 Consensus size: 40
7961476 ATAATTTATA
7961486 AGAATTTTATAAATTTTT-AAAAAAATTTCAAAACTTTTT
1 AGAATTTTATAAATTTTTAAAAAAAATTTCAAAACTTTTT
* * * *
7961525 AGAATTTTTTTATTTTTTAAAAAAAATTT-AGAA-TTTTT
1 AGAATTTTATAAATTTTTAAAAAAAATTTCAAAACTTTTT
* *
7961563 ATGAGTTTTAAAAATTTTTAA
1 A-GAATTTTATAAATTTTTAA
7961584 GTTTTTTATA
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
38 6 0.12
39 32 0.67
40 10 0.21
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (40 bp):
AGAATTTTATAAATTTTTAAAAAAAATTTCAAAACTTTTT
Found at i:7961633 original size:29 final size:27
Alignment explanation
Indices: 7961521--7961634 Score: 97
Period size: 28 Copynumber: 4.0 Consensus size: 27
7961511 TTTCAAAACT
*
7961521 TTTTAGAATTTTTTT-ATTTTTTAAAAAAA
1 TTTTA-AATTTTTTTGA-ATTTT-AAAAAA
* * * *
7961550 ATTTAGAATTTTTATGAGTTTTAAAAAT
1 TTTTA-AATTTTTTTGAATTTTAAAAAA
*
7961578 TTTTAAGTTTTTTAT-AATTTTAAAAAA
1 TTTTAAATTTTTT-TGAATTTTAAAAAA
7961605 TTCTTAAATTTTTTTGAATTTTAATAAAA
1 TT-TTAAATTTTTTTGAATTTTAA-AAAA
7961634 T
1 T
7961635 GAAAAAAATT
Statistics
Matches: 70, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
27 19 0.27
28 28 0.40
29 22 0.31
30 1 0.01
ACGTcount: A:0.39, C:0.01, G:0.05, T:0.55
Consensus pattern (27 bp):
TTTTAAATTTTTTTGAATTTTAAAAAA
Found at i:7961693 original size:29 final size:29
Alignment explanation
Indices: 7961521--7961703 Score: 94
Period size: 28 Copynumber: 6.5 Consensus size: 29
7961511 TTTCAAAACT
*
7961521 TTTTAGAATTTTTTTA-TTTTTTAAAAAAA
1 TTTTAGAA-TTTTTTAGATTTTTAAAAAAA
* * *
7961550 ATTTAGAA-TTTTTATGAGTTTT-AAAAAT
1 TTTTAGAATTTTTTA-GATTTTTAAAAAAA
* * *
7961578 TTTTA-AGTTTTTTATAATTTT-AAAAAA
1 TTTTAGAATTTTTTAGATTTTTAAAAAAA
* * *
7961605 TTCTTA-AATTTTTTTGAATTTTAATAAAA
1 TT-TTAGAATTTTTTAGATTTTTAAAAAAA
** * ** * ** * *
7961634 -TGAAAAAAATTATA-ATTTTCGAAGAAG
1 TTTTAGAATTTTTTAGATTTTTAAAAAAA
7961661 TTTTAGAATTTTTTAGATTTTTAAAAAAA
1 TTTTAGAATTTTTTAGATTTTTAAAAAAA
*
7961690 TTTTAAAATTTTTT
1 TTTTAGAATTTTTT
7961704 TTAAAATTGA
Statistics
Matches: 110, Mismatches: 36, Indels: 16
0.68 0.22 0.10
Matches are distributed among these distances:
27 27 0.25
28 45 0.41
29 38 0.35
ACGTcount: A:0.40, C:0.01, G:0.07, T:0.52
Consensus pattern (29 bp):
TTTTAGAATTTTTTAGATTTTTAAAAAAA
Found at i:7964388 original size:15 final size:14
Alignment explanation
Indices: 7964354--7964397 Score: 63
Period size: 13 Copynumber: 3.1 Consensus size: 14
7964344 TTTTTGTCTT
7964354 TTCTTTTATTAAGG
1 TTCTTTTATTAAGG
*
7964368 TT-TTTTTTTAAGG
1 TTCTTTTATTAAGG
7964381 ATTCTTTTATTAAGG
1 -TTCTTTTATTAAGG
7964396 TT
1 TT
7964398 TTAAAACATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
13 10 0.38
14 6 0.23
15 10 0.38
ACGTcount: A:0.20, C:0.05, G:0.14, T:0.61
Consensus pattern (14 bp):
TTCTTTTATTAAGG
Found at i:7965375 original size:21 final size:20
Alignment explanation
Indices: 7965349--7965394 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
7965339 TTGACGTAAA
7965349 AAATAC-TCATAATAAACAAAT
1 AAATACATCA-AATAAA-AAAT
*
7965370 AAATACATCAAATAAATAAT
1 AAATACATCAAATAAAAAAT
7965390 AAATA
1 AAATA
7965395 AATATAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 8 0.35
21 12 0.52
22 3 0.13
ACGTcount: A:0.65, C:0.11, G:0.00, T:0.24
Consensus pattern (20 bp):
AAATACATCAAATAAAAAAT
Found at i:7977150 original size:15 final size:15
Alignment explanation
Indices: 7977121--7977153 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
7977111 AAAACGCTGT
7977121 AATCATATGATAAAA
1 AATCATATGATAAAA
7977136 AATCAATATGA-AAAA
1 AATC-ATATGATAAAA
7977151 AAT
1 AAT
7977154 ATAAACGTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.64, C:0.06, G:0.06, T:0.24
Consensus pattern (15 bp):
AATCATATGATAAAA
Found at i:7977975 original size:26 final size:26
Alignment explanation
Indices: 7977945--7977994 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
7977935 TATTTAAAAG
7977945 TTTAGGGT-CTAAATTATATATTTTAT
1 TTTA-GGTACTAAATTATATATTTTAT
* *
7977971 TTTAGGTACTAATTTGTATATTTT
1 TTTAGGTACTAAATTATATATTTT
7977995 CTCAAAGTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 3 0.14
26 18 0.86
ACGTcount: A:0.28, C:0.04, G:0.12, T:0.56
Consensus pattern (26 bp):
TTTAGGTACTAAATTATATATTTTAT
Found at i:7982449 original size:16 final size:16
Alignment explanation
Indices: 7982411--7982450 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
7982401 AAACTTTAAA
*
7982411 ATCATCATAAATCATG
1 ATCATCATAAATCATC
*
7982427 ATCATCATAAATTATC
1 ATCATCATAAATCATC
*
7982443 ATTATCAT
1 ATCATCAT
7982451 TCGTTTATCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.42, C:0.17, G:0.03, T:0.38
Consensus pattern (16 bp):
ATCATCATAAATCATC
Found at i:8011659 original size:2 final size:2
Alignment explanation
Indices: 8011652--8011711 Score: 84
Period size: 2 Copynumber: 29.5 Consensus size: 2
8011642 TTGCTGGCTA
* * *
8011652 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AC AC ACT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT
8011695 AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT A
8011712 CACCTTATAA
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
2 54 0.98
3 1 0.02
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:8012535 original size:2 final size:2
Alignment explanation
Indices: 8012528--8012561 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
8012518 TTGATTTTTC
*
8012528 TA TA TA TA GA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8012562 TACAAAATGC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8013143 original size:117 final size:115
Alignment explanation
Indices: 8012927--8013144 Score: 267
Period size: 117 Copynumber: 1.9 Consensus size: 115
8012917 TCAACTAAAT
* ** *
8012927 AAAAATATTTAAAAATTATTAGTTATTGAAATTTAATTTTTAATAATTTATAAATAATCTAATAT
1 AAAAATATTTAAAAATTATTAATTATCCAAAATTAATTTTTAATAATTTATAAATAATCTAATAT
****
8012992 ATATCATTTTATCGCATAAAATTAATTTTCTAATAATTCTATGGTATTTA
66 ATATCATTTTATCGCATAAAATTAATCAAATAATAATTCTATGGTATTTA
* * *
8013042 AAAAAGTATTTAAAAATTGTTAATTATCCAAAATTAATTTTTTAAT-ATTTATATATAATTTAAA
1 AAAAA-TATTTAAAAATTATTAATTATCCAAAATTAA-TTTTTAATAATTTATAAATAATCT-AA
* ***
8013106 TATATATCTTTTTATCTTTTAAAATTAATCAAATAATAA
63 TATATATCATTTTATCGCATAAAATTAATCAAATAATAA
8013145 AATTTTAAAA
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
115 5 0.06
116 39 0.46
117 41 0.48
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (115 bp):
AAAAATATTTAAAAATTATTAATTATCCAAAATTAATTTTTAATAATTTATAAATAATCTAATAT
ATATCATTTTATCGCATAAAATTAATCAAATAATAATTCTATGGTATTTA
Found at i:8013242 original size:98 final size:98
Alignment explanation
Indices: 8013050--8013232 Score: 298
Period size: 98 Copynumber: 1.9 Consensus size: 98
8013040 TAAAAAAGTA
* *
8013050 TTTAAAAATTGTTAATTATCCAAAATTAATTTTTTAATATTTATATATAATTTAAATATATATCT
1 TTTAAAAATTGATAATTATCCAAAATTAATTTTCTAATATTTATATATAATTTAAATATATATCT
**
8013115 TTTTATCTTTTAAAATTAATCAAATAATAAAAT
66 TTTTATCTCCTAAAATTAATCAAATAATAAAAT
8013148 TTTAAAAATT-ATAAGTTATCCAAAATTAATTTTCTAATAATTTATATATAATTTAAATATATAT
1 TTTAAAAATTGATAA-TTATCCAAAATTAATTTTCTAAT-ATTTATATATAATTTAAATATATAT
8013212 C-TTTTATCTCCTAAAATTAAT
64 CTTTTTATCTCCTAAAATTAAT
8013233 TTATTAATAA
Statistics
Matches: 79, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
97 3 0.04
98 50 0.63
99 26 0.33
ACGTcount: A:0.44, C:0.07, G:0.01, T:0.48
Consensus pattern (98 bp):
TTTAAAAATTGATAATTATCCAAAATTAATTTTCTAATATTTATATATAATTTAAATATATATCT
TTTTATCTCCTAAAATTAATCAAATAATAAAAT
Found at i:8013290 original size:125 final size:124
Alignment explanation
Indices: 8013133--8013363 Score: 333
Period size: 129 Copynumber: 1.8 Consensus size: 124
8013123 TTTAAAATTA
* *
8013133 ATCAAATAATAAAATTTTAAAAATTATAAGTTATCCAAAATTAATTTTCTAATAA-TT-TATATA
1 ATCAAATAATAAAATTTCAAAAATTATAAGTTATCCAAAATTAATTTTCCAATAATTTGTATATA
8013196 TAATTTAAATATATATCTT-TTATCTCCTAAAATTAATTTATTAATAATTTTATGGTTTT
66 TAATTTAAATATATAT-TTATTATCTCCTAAAATTAATTTATTAATAATTTTATGGTTTT
* *
8013255 ATCAAATAAATAAAAATATTCAAAAATTATTAGTTATCCAGAATTAATTTTCCAATAATTTGGGT
1 ATCAAAT-AAT-AAAAT-TTCAAAAATTATAAGTTATCCAAAATTAATTTTCCAATAATTT--GT
**
8013320 ATATATAATTTAAATATATATTTATTATCTTTTAAAATTAATTT
61 ATATATAATTTAAATATATATTTATTATCTCCTAAAATTAATTT
8013364 TTTTTAATAA
Statistics
Matches: 95, Mismatches: 6, Indels: 9
0.86 0.05 0.08
Matches are distributed among these distances:
122 7 0.07
123 3 0.03
124 5 0.05
125 36 0.38
126 2 0.02
128 2 0.02
129 40 0.42
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.46
Consensus pattern (124 bp):
ATCAAATAATAAAATTTCAAAAATTATAAGTTATCCAAAATTAATTTTCCAATAATTTGTATATA
TAATTTAAATATATATTTATTATCTCCTAAAATTAATTTATTAATAATTTTATGGTTTT
Found at i:8017121 original size:9 final size:9
Alignment explanation
Indices: 8017109--8017169 Score: 61
Period size: 9 Copynumber: 6.4 Consensus size: 9
8017099 AAAATATAAA
8017109 AAAATTTCT
1 AAAATTTCT
8017118 AAAATTTCT
1 AAAATTTCT
*
8017127 AAAAATTTTTT
1 -AAAA-TTTCT
8017138 AAAATTTCT
1 AAAATTTCT
*
8017147 AAAGATTTTT
1 AAA-ATTTCT
8017157 AAAAATTT-T
1 -AAAATTTCT
8017166 AAAA
1 AAAA
8017170 AATATTCAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
8 4 0.09
9 17 0.38
10 17 0.38
11 7 0.16
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (9 bp):
AAAATTTCT
Found at i:8017170 original size:9 final size:10
Alignment explanation
Indices: 8017108--8017184 Score: 77
Period size: 10 Copynumber: 7.7 Consensus size: 10
8017098 AAAAATATAA
8017108 AAAAATTTCT
1 AAAAATTTCT
8017118 -AAAATTTCT
1 AAAAATTTCT
*
8017127 AAAAATTTTT
1 AAAAATTTCT
*
8017137 TAAAATTTCT
1 AAAAATTTCT
* *
8017147 AAAGATTTTT
1 AAAAATTTCT
8017157 AAAAATTT-T
1 AAAAATTTCT
*
8017166 AAAAAATATTCA
1 -AAAAAT-TTCT
8017178 AAAAATT
1 AAAAATT
8017185 CTTATTGGTG
Statistics
Matches: 55, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
9 10 0.18
10 37 0.67
11 8 0.15
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.42
Consensus pattern (10 bp):
AAAAATTTCT
Found at i:8017686 original size:60 final size:59
Alignment explanation
Indices: 8017613--8017735 Score: 176
Period size: 60 Copynumber: 2.1 Consensus size: 59
8017603 TCCATACTAA
* *
8017613 TTTTTTTAGTGATCCATC-GATAAATTGTCGGTAATTCATCGTAATTATAGATGGAAAAGT
1 TTTTTTTAATGATCCATCAG-TAAATTGTCGATAATTCATCGTAATTATAGATGGAAAA-T
* * *
8017673 TTTTTTTAATGATCCATCAGTAAATTGTTGATAATTCATTGTAATTATCGATGGAAAAT
1 TTTTTTTAATGATCCATCAGTAAATTGTCGATAATTCATCGTAATTATAGATGGAAAAT
8017732 TTTT
1 TTTT
8017736 CATCAATAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
59 5 0.09
60 51 0.89
61 1 0.02
ACGTcount: A:0.32, C:0.09, G:0.15, T:0.44
Consensus pattern (59 bp):
TTTTTTTAATGATCCATCAGTAAATTGTCGATAATTCATCGTAATTATAGATGGAAAAT
Found at i:8019967 original size:304 final size:303
Alignment explanation
Indices: 8019226--8020109 Score: 1175
Period size: 304 Copynumber: 2.9 Consensus size: 303
8019216 TTTTTAGCTC
** * * *
8019226 AAAATGCTTTTAATATTCCAGATGATAAATTTTAATTGTTGGATTATTGAAGGTGGTTATATCCA
1 AAAATGCCATTAATATTCTAGATGATAAATTTTAA-TGGTCGATTATTGAAGGTGGTTATATCCA
* * * * * * *
8019291 AAAATGCCTTCAATAACATTTTGTTAGAGATTATTCAAGGTGTTACCTGTAAGAAAACTCTTTTC
65 GAAATACCTTCAATAACATTTTGTTAGAGATTATTCAAGGCGTTACCCGTAGGAAAACGCTCTTC
* *
8019356 CTAATCCATTCGATTAATTTTTAGTTGGTATTATTGAAGGCATCTTTTTAAAACGCCTTCAATAA
130 ATAATCCATTCGATTAATTTTTAGTTGGTATTATTGAAGGCATTTTTTTAAAACGCCTTCAATAA
* * * *
8019421 TTTATTCAAAAAAGACGAGACGGATTCTTGAAGGTATTTTTTTGCCCAAAATGCCTTTAATA-TC
195 TTTATACAAAAAAGACGAGACGGATTCTTGAAGGCA-TTTTTTGCCTAAAACGCCTTTAATATTC
* *
8019485 TCACACAATAAATTTTTGGAGGGATTATTGAATGCGATTTTGGTAA
259 -CACATAATAAATTTTTGGAGGGATTATTGAATGCGATTTTAGTAA
* * * * **
8019531 AAAATGCCATGAATATTCTAGACGATAAATTTTAATGGTCGAATTATTAAAAGTGGTTATATATA
1 AAAATGCCATTAATATTCTAGATGATAAATTTTAATGGTCG-ATTATTGAAGGTGGTTATATCCA
* ** * *
8019596 GAAATACCTTCAATAACATTTTTTTACTGATTATTCAAGGCATTA-CCATAGGAAAACGC-CATT
65 GAAATACCTTCAATAACATTTTGTTAGAGATTATTCAAGGCGTTACCCGTAGGAAAACGCTC-TT
* * * * *
8019659 CATAATACATTTGATTAATTTTTAGTTAGTATTATTGAAGGCCTTTTTTTAAAACGCCATCAATA
129 CATAATCCATTCGATTAATTTTTAGTTGGTATTATTGAAGGCATTTTTTTAAAACGCCTTCAATA
* * *
8019724 ATTTATACAAAAAAGATGCGACAGATTCTTGAAGGCATTTTTTGCCTAAAACGCCTTTAATATTC
194 ATTTATACAAAAAAGACGAGACGGATTCTTGAAGGCATTTTTTGCCTAAAACGCCTTTAATATTC
* *
8019789 CACATAATAAATTTTT-TATGGGATTATTGAA-GACTATTTTAGTAA
259 CACATAATAAATTTTTGGA-GGGATTATTGAATG-CGATTTTAGTAA
8019834 AAAATGCCATTAATATTCTAGATGATAAATTTTAATGGTCAGATTATTGAAGGTGGTTATATCCA
1 AAAATGCCATTAATATTCTAGATGATAAATTTTAATGGTC-GATTATTGAAGGTGGTTATATCCA
*
8019899 GAAATACCTTCAATAACATTTTGTTAGGGATTATTCAAGGCGTTACCCGTAGGAAAACGCTCTTC
65 GAAATACCTTCAATAACATTTTGTTAGAGATTATTCAAGGCGTTACCCGTAGGAAAACGCTCTTC
** * *
8019964 ATAATCCATTCGATTAATTTTTAGTTGGTATTATTGAAGGTGTTTTTTTAAAACACCTTTAATAA
130 ATAATCCATTCGATTAATTTTTAGTTGGTATTATTGAAGGCATTTTTTTAAAACGCCTTCAATAA
** * * * *
8020029 TCCATACAAAAAAGACGTGACGGATTCTTGAAGGCATTTTTGTTCATAAAACTCCTTTAATATTC
195 TTTATACAAAAAAGACGAGACGGATTCTTGAAGGCATTTTT-TGCCTAAAACGCCTTTAATATTC
*
8020094 GACATAATAAATTTTT
259 CACATAATAAATTTTT
8020110 AGGGTGATTA
Statistics
Matches: 501, Mismatches: 69, Indels: 18
0.85 0.12 0.03
Matches are distributed among these distances:
302 2 0.00
303 158 0.32
304 218 0.44
305 123 0.25
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38
Consensus pattern (303 bp):
AAAATGCCATTAATATTCTAGATGATAAATTTTAATGGTCGATTATTGAAGGTGGTTATATCCAG
AAATACCTTCAATAACATTTTGTTAGAGATTATTCAAGGCGTTACCCGTAGGAAAACGCTCTTCA
TAATCCATTCGATTAATTTTTAGTTGGTATTATTGAAGGCATTTTTTTAAAACGCCTTCAATAAT
TTATACAAAAAAGACGAGACGGATTCTTGAAGGCATTTTTTGCCTAAAACGCCTTTAATATTCCA
CATAATAAATTTTTGGAGGGATTATTGAATGCGATTTTAGTAA
Found at i:8023533 original size:40 final size:39
Alignment explanation
Indices: 8023488--8023614 Score: 107
Period size: 40 Copynumber: 3.2 Consensus size: 39
8023478 CACTTAAAAT
8023488 ACCATTCAACATATGATTTAGCCCCCTAATATCATACAAA
1 ACCATTCAACATATGATTTAGCCCCC-AATATCATACAAA
* * * ** * *
8023528 ACCATTCAACAAAATAATATTAGACAACAAGGT-TCA-GC-AC
1 ACCATTCAAC-ATATGAT-TTAGCCCCCAA--TATCATACAAA
*
8023568 ACCATTCAACATATGATTTAGTCCCCCAATATCATACAAT
1 ACCATTCAACATATGATTTAG-CCCCCAATATCATACAAA
8023608 ACCATTC
1 ACCATTC
8023615 GATAATACAA
Statistics
Matches: 65, Mismatches: 14, Indels: 16
0.68 0.15 0.17
Matches are distributed among these distances:
37 1 0.02
38 7 0.11
39 10 0.15
40 29 0.45
41 8 0.12
42 9 0.14
43 1 0.02
ACGTcount: A:0.41, C:0.27, G:0.06, T:0.26
Consensus pattern (39 bp):
ACCATTCAACATATGATTTAGCCCCCAATATCATACAAA
Found at i:8023627 original size:80 final size:79
Alignment explanation
Indices: 8023488--8023889 Score: 456
Period size: 80 Copynumber: 5.1 Consensus size: 79
8023478 CACTTAAAAT
* * * * * *
8023488 ACCATTCAACATATGATTTAG-CCCCCTAATATCATACAAAACCATTCAACAAAATAATATTAGA
1 ACCATTCAGCATATGATTTAGTCCCCC-AATATCATACAATACCATTCGA-TAAACAATATCAGA
*
8023552 CAACAAGGTTCAGCAC
64 CAACAAGGTTCAGCAA
*
8023568 ACCATTCAACATATGATTTAGTCCCCCAATATCATACAATACCATTCGATAATACAATATCAGAC
1 ACCATTCAGCATATGATTTAGTCCCCCAATATCATACAATACCATTCGATAA-ACAATATCAGAC
*
8023633 AACAAGGTTCAGTAA
65 AACAAGGTTCAGCAA
* * * * * *
8023648 ACCATTCAGCATAAGATTTTGCCCCCCAATATCATACAAAACCATTCAGCA-AAATAATATTAGA
1 ACCATTCAGCATATGATTTAGTCCCCCAATATCATACAATACCATTC-G-ATAAACAATATCAGA
*
8023712 CAACAAGGTTCAGCAC
64 CAACAAGGTTCAGCAA
8023728 ACCATTCAGCATATGATTTAGT-CCCCAATATCATACAATACCATTCGATAATACAATATCAG-C
1 ACCATTCAGCATATGATTTAGTCCCCCAATATCATACAATACCATTCGATAA-ACAATATCAGAC
* * *
8023791 AACAAAGTTTAACAA
65 AACAAGGTTCAGCAA
* * * * * *
8023806 ACCATTCGGCATATGATTCA-ACTCTCCAATATCATACAATACCATTC-AGTAAAAAAAATCAGA
1 ACCATTCAGCATATGATTTAGTC-CCCCAATATCATACAATACCATTCGA-TAAACAATATCAGA
*
8023869 CAACAAGGTTCAACAA
64 CAACAAGGTTCAGCAA
8023885 ACCAT
1 ACCAT
8023890 AATATTTAAA
Statistics
Matches: 278, Mismatches: 34, Indels: 21
0.83 0.10 0.06
Matches are distributed among these distances:
77 1 0.00
78 42 0.15
79 78 0.28
80 148 0.53
81 8 0.03
82 1 0.00
ACGTcount: A:0.43, C:0.25, G:0.08, T:0.24
Consensus pattern (79 bp):
ACCATTCAGCATATGATTTAGTCCCCCAATATCATACAATACCATTCGATAAACAATATCAGACA
ACAAGGTTCAGCAA
Found at i:8023688 original size:160 final size:158
Alignment explanation
Indices: 8023488--8023889 Score: 590
Period size: 160 Copynumber: 2.5 Consensus size: 158
8023478 CACTTAAAAT
* * *
8023488 ACCATTCAACATATGATTTAGCCCCCTAATATCATACAAAACCATTCAACAAAATAATATTAGAC
1 ACCATTCAGCATATGATTTAGCCCCCCAATATCATACAAAACCATTCAGCAAAATAATATTAGAC
8023553 AACAAGGTTCAGCACACCATTCAACATATGATTTAGTCCCCCAATATCATACAATACCATTCGAT
66 AACAAGGTTCAGCACACCATTCAACATATGATTTAGT-CCCCAATATCATACAATACCATTCGAT
* **
8023618 AATACAATATCAGACAACAAGGTTCAGTAA
130 AATACAATATCAG-CAACAAAGTTCAACAA
* *
8023648 ACCATTCAGCATAAGATTTTGCCCCCCAATATCATACAAAACCATTCAGCAAAATAATATTAGAC
1 ACCATTCAGCATATGATTTAGCCCCCCAATATCATACAAAACCATTCAGCAAAATAATATTAGAC
*
8023713 AACAAGGTTCAGCACACCATTCAGCATATGATTTAGTCCCCAATATCATACAATACCATTCGATA
66 AACAAGGTTCAGCACACCATTCAACATATGATTTAGTCCCCAATATCATACAATACCATTCGATA
*
8023778 ATACAATATCAGCAACAAAGTTTAACAA
131 ATACAATATCAGCAACAAAGTTCAACAA
* * * * * * * * *
8023806 ACCATTCGGCATATGATTCAACTCTCCAATATCATACAATACCATTCAGTAAAA-AAAATCAGAC
1 ACCATTCAGCATATGATTTAGCCCCCCAATATCATACAAAACCATTCAGCAAAATAATATTAGAC
* *
8023870 AACAAGGTTCAACAAACCAT
66 AACAAGGTTCAGCACACCAT
8023890 AATATTTAAA
Statistics
Matches: 219, Mismatches: 23, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
157 26 0.12
158 57 0.26
159 40 0.18
160 96 0.44
ACGTcount: A:0.43, C:0.25, G:0.08, T:0.24
Consensus pattern (158 bp):
ACCATTCAGCATATGATTTAGCCCCCCAATATCATACAAAACCATTCAGCAAAATAATATTAGAC
AACAAGGTTCAGCACACCATTCAACATATGATTTAGTCCCCAATATCATACAATACCATTCGATA
ATACAATATCAGCAACAAAGTTCAACAA
Found at i:8033695 original size:131 final size:132
Alignment explanation
Indices: 8033443--8033777 Score: 362
Period size: 131 Copynumber: 2.5 Consensus size: 132
8033433 GGTATTTTTA
* * * *
8033443 TACAAACGCCACCAAAGCAATAACGTTTTT-TCATAAAAATGCCACTAAATTAATGGCGTCTCAA
1 TACAAATGCTACCAAAGCAATAACGTTTTTCTCATAAAAATACCACTAAATTAACGGCGTCTCAA
* * * *
8033507 AGATACAAATGCTGCTAATATAGAGACGTTTTTAGATAAAAACACCTTTAAAGTAGCG-ATGTTC
66 AGATAAAAACGCT-CTAATATAGAGACGTTTTTAGATAAAAACACCTTAAAAATAGCGAATGTTC
8033571 AGT
130 AGT
*
8033574 TACAAATGCTACCAAAGCAATAACGTTTTTCTCATAAAAACT-CCACTAAATTAACGGCATCTCA
1 TACAAATGCTACCAAAGCAATAACGTTTTTCTCATAAAAA-TACCACTAAATTAACGGCGTCTCA
* **
8033638 AAGA-AAAAACG-TCATTAATATAGA-A-GTATTTTCAGATACAAA-TGCTTCAAAAATAGCGAC
65 AAGATAAAAACGCTC--TAATATAGAGACGT-TTTT-AGATAAAAACACCTT-AAAAATAGCGA-
*
8033698 ATTTTCAGT
124 ATGTTCAGT
* * ** * *
8033707 TACAAATGGTATCAAAGCAATGTCGTTTTTCTCATAAAAAATACCACTAATTTAGCGGCGTCTCA
1 TACAAATGCTACCAAAGCAATAACGTTTTTCTCAT-AAAAATACCACTAAATTAACGGCGTCTCA
8033772 AAGATA
65 AAGATA
8033778 CAAATGCTAC
Statistics
Matches: 173, Mismatches: 19, Indels: 20
0.82 0.09 0.09
Matches are distributed among these distances:
129 3 0.02
130 9 0.05
131 58 0.34
132 33 0.19
133 41 0.24
134 28 0.16
135 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.28
Consensus pattern (132 bp):
TACAAATGCTACCAAAGCAATAACGTTTTTCTCATAAAAATACCACTAAATTAACGGCGTCTCAA
AGATAAAAACGCTCTAATATAGAGACGTTTTTAGATAAAAACACCTTAAAAATAGCGAATGTTCA
GT
Found at i:8036222 original size:17 final size:17
Alignment explanation
Indices: 8036200--8036245 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 17
8036190 TATCAAGTTA
8036200 TTTTTTCTTTTTTA-TT
1 TTTTTTCTTTTTTACTT
*
8036216 GTTTTTTC-TGTTTACTT
1 -TTTTTTCTTTTTTACTT
8036233 TTTCTTTCTTTTT
1 TTT-TTTCTTTTT
8036246 CCTTTTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
16 8 0.33
17 13 0.54
18 3 0.12
ACGTcount: A:0.04, C:0.11, G:0.04, T:0.80
Consensus pattern (17 bp):
TTTTTTCTTTTTTACTT
Found at i:8036797 original size:35 final size:36
Alignment explanation
Indices: 8036730--8036798 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
8036720 GGCACATGTC
* * *
8036730 CAAATTTATTATAATATCTCTCTTTTTATAATTAGT
1 CAAAATTACTATAATATCTCTCTTATTATAATTAGT
*
8036766 CAAAATTACTATAATAT-TTTCTTATTATAATTA
1 CAAAATTACTATAATATCTCTCTTATTATAATTA
8036799 CAAAAATAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 14 0.48
36 15 0.52
ACGTcount: A:0.38, C:0.10, G:0.01, T:0.51
Consensus pattern (36 bp):
CAAAATTACTATAATATCTCTCTTATTATAATTAGT
Found at i:8037200 original size:26 final size:24
Alignment explanation
Indices: 8037158--8037205 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
8037148 GAAAATTACT
* *
8037158 ATAAAAATATATTTATTATTTTAAC
1 ATAAAAATAAATGTATT-TTTTAAC
8037183 ATAAATAATAAATGTATTTTTTA
1 ATAAA-AATAAATGTATTTTTTA
8037206 TAAAAATAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 10 0.50
26 10 0.50
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (24 bp):
ATAAAAATAAATGTATTTTTTAAC
Found at i:8048150 original size:11 final size:11
Alignment explanation
Indices: 8048136--8048183 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
8048126 ACACAATTTT
8048136 AAAAAATTAT-
1 AAAAAATTATA
*
8048146 AAAAAATTCTA
1 AAAAAATTATA
*
8048157 TAAAAATTATA
1 AAAAAATTATA
* *
8048168 AAAAATTTTTA
1 AAAAAATTATA
8048179 AAAAA
1 AAAAA
8048184 TTTTAAAATT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
10 9 0.29
11 22 0.71
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (11 bp):
AAAAAATTATA
Found at i:8048163 original size:21 final size:21
Alignment explanation
Indices: 8048130--8048204 Score: 95
Period size: 21 Copynumber: 3.7 Consensus size: 21
8048120 AATTCAACAC
8048130 AATTT-TAAAAAATTATAAAA
1 AATTTATAAAAAATTATAAAA
8048150 AATTCTAT-AAAAATTATAAAA
1 AATT-TATAAAAAATTATAAAA
* *
8048171 AATTTTTAAAAAATT-T-TAA
1 AATTTATAAAAAATTATAAAA
8048190 AATTTATAAAAAATT
1 AATTTATAAAAAATT
8048205 TTTAATTTCA
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
19 16 0.33
20 7 0.14
21 25 0.51
22 1 0.02
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (21 bp):
AATTTATAAAAAATTATAAAA
Found at i:8048184 original size:11 final size:10
Alignment explanation
Indices: 8048019--8048259 Score: 103
Period size: 10 Copynumber: 24.3 Consensus size: 10
8048009 AAATTCTAAC
8048019 AAAAATTTTA
1 AAAAATTTTA
* *
8048029 AACAATTTTT
1 AAAAATTTTA
*
8048039 AAAAA-TTCA
1 AAAAATTTTA
* *
8048048 AAAAGAATTAA
1 AAAA-ATTTTA
*
8048059 AAAAATTCTCA
1 AAAAATT-TTA
*
8048070 AAAAATATT-
1 AAAAATTTTA
8048079 AAAAATTTT-
1 AAAAATTTTA
8048088 -AAAATTTCTA
1 AAAAATTT-TA
*
8048098 AAATATTTT-
1 AAAAATTTTA
* **
8048107 AGAAA-CCTA
1 AAAAATTTTA
*
8048116 AACAAA-TTCA
1 AA-AAATTTTA
*
8048126 ACACAATTTTA
1 A-AAAATTTTA
*
8048137 AAAAATTATA
1 AAAAATTTTA
*
8048147 AAAAATTCTA
1 AAAAATTTTA
*
8048157 TAAAAATTATA
1 -AAAAATTTTA
8048168 AAAAATTTTTA
1 AAAAA-TTTTA
8048179 AAAAATTTT-
1 AAAAATTTTA
8048188 -AAAATTTATA
1 AAAAATTT-TA
8048198 AAAAATTTT-
1 AAAAATTTTA
* *
8048207 --TAATTTCA
1 AAAAATTTTA
*
8048215 AAAAATTATCA
1 AAAAATT-TTA
**
8048226 AAAAATACTA
1 AAAAATTTTA
8048236 AAAAAGTTTT-
1 AAAAA-TTTTA
8048246 AAAAATTTCTA
1 AAAAATTT-TA
8048257 AAA
1 AAA
8048260 TTTTTTAAAT
Statistics
Matches: 174, Mismatches: 35, Indels: 43
0.69 0.14 0.17
Matches are distributed among these distances:
7 5 0.03
8 15 0.09
9 23 0.13
10 66 0.38
11 65 0.37
ACGTcount: A:0.58, C:0.07, G:0.01, T:0.34
Consensus pattern (10 bp):
AAAAATTTTA
Found at i:8048307 original size:60 final size:56
Alignment explanation
Indices: 8048158--8048324 Score: 151
Period size: 60 Copynumber: 2.9 Consensus size: 56
8048148 AAAATTCTAT
** * * *
8048158 AAAAATTAT-AAAAAATTTTTAAAAAATTTTAAAATTTATAAAAAATTTTTAATTTCA
1 AAAAATTATCAAAAAA-TACTAAAAAATTTAAAAATTTCT-AAAATTTTTTAATTTCA
8048215 AAAAATTATCAAAAAATACTAAAAAAGTTTTAAAAATTTCTAAAATTTTTTAAATGTTCA
1 AAAAATTATCAAAAAATACTAAAAAA--TTTAAAAATTTCTAAAATTTTTT-AAT-TTCA
* * * *
8048275 AAATATTTTCTAAAAATGTA-TCAAAAAATTTAAAAAATTCT-AAATTTTTT
1 AAAAATTATC-AAAAA-ATACT-AAAAAATTTAAAAATTTCTAAAATTTTTT
8048325 GAAAAATTAT
Statistics
Matches: 93, Mismatches: 9, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
57 17 0.18
58 15 0.16
59 23 0.25
60 24 0.26
61 6 0.06
62 8 0.09
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (56 bp):
AAAAATTATCAAAAAATACTAAAAAATTTAAAAATTTCTAAAATTTTTTAATTTCA
Found at i:8049015 original size:20 final size:20
Alignment explanation
Indices: 8048952--8049004 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
8048942 TTTTTTAAAA
*
8048952 TTTTT-AGAATCTTCAAAATT
1 TTTTTCAGAAT-TTCTAAATT
8048972 TTTTTCAGAATTTCTAAATT
1 TTTTTCAGAATTTCTAAATT
8048992 TTTTTCAGAATTT
1 TTTTTCAGAATTT
8049005 TTTTATTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 26 0.84
21 5 0.16
ACGTcount: A:0.30, C:0.09, G:0.06, T:0.55
Consensus pattern (20 bp):
TTTTTCAGAATTTCTAAATT
Found at i:8049093 original size:19 final size:19
Alignment explanation
Indices: 8049071--8049113 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
8049061 TTTTCAGAAG
8049071 TTTTTAATTTT-TAAAATTT
1 TTTTTAATTTTCT-AAATTT
*
8049090 TTTTGAATTTTCTAAATTT
1 TTTTTAATTTTCTAAATTT
8049109 TTTTT
1 TTTTT
8049114 TTGAAATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 20 0.95
20 1 0.05
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (19 bp):
TTTTTAATTTTCTAAATTT
Found at i:8049136 original size:20 final size:19
Alignment explanation
Indices: 8049111--8049173 Score: 65
Period size: 20 Copynumber: 3.3 Consensus size: 19
8049101 CTAAATTTTT
8049111 TTTTTGAAATTATGTTAGAA
1 TTTTTGAAATTAT-TTAGAA
* *
8049131 TTTTTGAAA-AATTTAGAG
1 TTTTTGAAATTATTTAGAA
* *
8049149 TTTTTAAAATTTTTTAAGAA
1 TTTTTGAAATTATTT-AGAA
8049169 TTTTT
1 TTTTT
8049174 TTATAATTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
18 13 0.37
19 5 0.14
20 17 0.49
ACGTcount: A:0.35, C:0.00, G:0.11, T:0.54
Consensus pattern (19 bp):
TTTTTGAAATTATTTAGAA
Found at i:8049152 original size:18 final size:19
Alignment explanation
Indices: 8049111--8049157 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
8049101 CTAAATTTTT
*
8049111 TTTTTGAAATTATGTTAGAA
1 TTTTTGAAA-AATGTTAGAA
*
8049131 TTTTTGAAAAAT-TTAGAG
1 TTTTTGAAAAATGTTAGAA
8049149 TTTTT-AAAA
1 TTTTTGAAAA
8049158 TTTTTTAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 4 0.16
18 10 0.40
19 2 0.08
20 9 0.36
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.49
Consensus pattern (19 bp):
TTTTTGAAAAATGTTAGAA
Found at i:8049181 original size:22 final size:20
Alignment explanation
Indices: 8049149--8049209 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 20
8049139 AAATTTAGAG
*
8049149 TTTTTAAAATTTTTTAAGAATT
1 TTTTTAAAA-TTTTGAA-AATT
*
8049171 TTTTTATAATTTTGAAAATT
1 TTTTTAAAATTTTGAAAATT
* *
8049191 TTTTTGACATTTTTGAAAA
1 TTTTT-AAAATTTTGAAAA
8049210 AATTTATAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
20 9 0.26
21 17 0.50
22 8 0.24
ACGTcount: A:0.34, C:0.02, G:0.07, T:0.57
Consensus pattern (20 bp):
TTTTTAAAATTTTGAAAATT
Found at i:8049204 original size:21 final size:20
Alignment explanation
Indices: 8049157--8049209 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
8049147 AGTTTTTAAA
* *
8049157 ATTTTTTAAGAATTTTTTTAT
1 ATTTTTGAA-AATTTTTTTAC
*
8049178 AATTTTGAAAATTTTTTTGAC
1 ATTTTTGAAAATTTTTTT-AC
8049199 ATTTTTGAAAA
1 ATTTTTGAAAA
8049210 AATTTATAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 9 0.33
21 18 0.67
ACGTcount: A:0.34, C:0.02, G:0.08, T:0.57
Consensus pattern (20 bp):
ATTTTTGAAAATTTTTTTAC
Found at i:8049338 original size:20 final size:19
Alignment explanation
Indices: 8049277--8049357 Score: 65
Period size: 20 Copynumber: 4.1 Consensus size: 19
8049267 GGATTTCTTG
**
8049277 AAATTCTTTTGAATTTTTTG
1 AAATT-TTTTGAATTTTTAA
* *
8049297 AGATTTTTTAAACTTTTT-A
1 AAATTTTTTGAA-TTTTTAA
8049316 AAATTATTTTGAATTTTTAA
1 AAATT-TTTTGAATTTTTAA
* *
8049336 AAATTTGATAGAATTTTTAA
1 AAATTT-TTTGAATTTTTAA
8049356 AA
1 AA
8049358 TTTATGTAGA
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
19 16 0.32
20 34 0.68
ACGTcount: A:0.37, C:0.02, G:0.07, T:0.53
Consensus pattern (19 bp):
AAATTTTTTGAATTTTTAA
Found at i:8049367 original size:20 final size:19
Alignment explanation
Indices: 8049310--8049371 Score: 72
Period size: 20 Copynumber: 3.2 Consensus size: 19
8049300 TTTTTTAAAC
* *
8049310 TTTTTAAAATTATTTTGAA
1 TTTTTAAAATTATGTAGAA
8049329 TTTTTAAAAATT-TGATAGAA
1 TTTTT-AAAATTATG-TAGAA
8049349 TTTTTAAAATTTATGTAGAA
1 TTTTTAAAA-TTATGTAGAA
8049369 TTT
1 TTT
8049372 AAAAAACATT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 10 0.27
20 25 0.68
21 2 0.05
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (19 bp):
TTTTTAAAATTATGTAGAA
Done.