Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25814696
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 122000 characters in sequence are not A, C, G, or T
File 43 of 126
Found at i:8635462 original size:13 final size:12
Alignment explanation
Indices: 8635435--8635481 Score: 51
Period size: 13 Copynumber: 3.8 Consensus size: 12
8635425 GGTTTGGAGT
*
8635435 TTAGGTTT-GGT
1 TTAGGTTTAGGG
8635446 TTAGGATTTAGGG
1 TTAGG-TTTAGGG
*
8635459 TTAGGTTTAGGT
1 TTAGGTTTAGGG
8635471 TTATGGTTTAG
1 TTA-GGTTTAG
8635482 TTGAGGGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
11 5 0.16
12 12 0.39
13 14 0.45
ACGTcount: A:0.17, C:0.00, G:0.34, T:0.49
Consensus pattern (12 bp):
TTAGGTTTAGGG
Found at i:8635478 original size:32 final size:31
Alignment explanation
Indices: 8635315--8635490 Score: 107
Period size: 32 Copynumber: 5.5 Consensus size: 31
8635305 TTTGGGTATA
*
8635315 GGTTT-GAGTTAGGGTTTAGGGTTTAGAGTTTA-
1 GGTTTAGATTTAGGG-TTA-GGTTTAG-GTTTAT
*
8635347 GAGTTT-GATTTAGGGTTTAAGGTTT-GGTTTTAG
1 G-GTTTAGATTTAGGG-TT-AGGTTTAGG-TTTAT
* ** *
8635380 GGTTTAGAGTTT-GGTTTAGGTTTTTGTTTAA
1 GGTTTAGA-TTTAGGGTTAGGTTTAGGTTTAT
* *
8635411 GGTTTAAGATTTATGGTTTGGAGTTTAGG-TT-T
1 GGTTT-AGATTTA-GGGTTAG-GTTTAGGTTTAT
8635443 GGTTTAGGATTTAGGGTTAGGTTTAGGTTTAT
1 GGTTTA-GATTTAGGGTTAGGTTTAGGTTTAT
*
8635475 GGTTTAG-TTGAGGGTT
1 GGTTTAGATTTAGGGTT
8635491 TGGTGTTTAC
Statistics
Matches: 119, Mismatches: 11, Indels: 30
0.74 0.07 0.19
Matches are distributed among these distances:
30 15 0.13
31 28 0.24
32 34 0.29
33 33 0.28
34 9 0.08
ACGTcount: A:0.18, C:0.00, G:0.34, T:0.48
Consensus pattern (31 bp):
GGTTTAGATTTAGGGTTAGGTTTAGGTTTAT
Found at i:8635481 original size:19 final size:18
Alignment explanation
Indices: 8635267--8635481 Score: 104
Period size: 19 Copynumber: 11.3 Consensus size: 18
8635257 AGGTTGGTTT
* *
8635267 GTTTCGGTTTAGGGTT-G
1 GTTTAGGTTTAGGTTTAG
*
8635284 GTTTAGGATTTCGAGTTT-G
1 GTTTAGG-TTTAG-GTTTAG
* *
8635303 GCTTTGGGTATAGGTTT-G
1 G-TTTAGGTTTAGGTTTAG
8635321 AG-TTAGGGTTTAGGGTTTAG
1 -GTTTA-GGTTTA-GGTTTAG
*
8635341 AGTTTAGAGTTT-GATTTAGG
1 -GTTTAG-GTTTAGGTTTA-G
8635361 GTTTAAGGTTT-GGTTTTAGG
1 GTTT-AGGTTTAGG-TTTA-G
8635381 GTTTAGAGTTT-GGTTTAG
1 GTTTAG-GTTTAGGTTTAG
**
8635399 GTTTTTGTTTAAGGTTTAAG
1 GTTTAGGTTT-AGGTTT-AG
* *
8635419 ATTTATGGTTTGGAGTTTAG
1 GTTTA-GGTTTAG-GTTTAG
8635439 GTTT-GGTTTAGGATTTAG
1 GTTTAGGTTTAGG-TTTAG
*
8635457 GGTTAGGTTTAGGTTTATG
1 GTTTAGGTTTAGGTTTA-G
8635476 GTTTAG
1 GTTTAG
8635482 TTGAGGGTTT
Statistics
Matches: 157, Mismatches: 20, Indels: 40
0.72 0.09 0.18
Matches are distributed among these distances:
17 13 0.08
18 37 0.24
19 53 0.34
20 39 0.25
21 15 0.10
ACGTcount: A:0.17, C:0.01, G:0.34, T:0.48
Consensus pattern (18 bp):
GTTTAGGTTTAGGTTTAG
Found at i:8640700 original size:9 final size:9
Alignment explanation
Indices: 8640686--8640719 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
8640676 ATCTTTACCT
8640686 TATAATATA
1 TATAATATA
8640695 TATAATATA
1 TATAATATA
8640704 TAT-ATATA
1 TATAATATA
*
8640712 AATAATAT
1 TATAATAT
8640720 TTCCATTCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 7 0.30
9 16 0.70
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
TATAATATA
Found at i:8648504 original size:18 final size:18
Alignment explanation
Indices: 8648483--8648520 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
8648473 CATGTAATAT
*
8648483 ACTTAAATTAATCAATTA
1 ACTTAAACTAATCAATTA
8648501 ACTTAAACTAATCAATTA
1 ACTTAAACTAATCAATTA
8648519 AC
1 AC
8648521 ATGGAAGTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.34
Consensus pattern (18 bp):
ACTTAAACTAATCAATTA
Found at i:8651518 original size:15 final size:15
Alignment explanation
Indices: 8651498--8651528 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8651488 ACTGGCAAGC
*
8651498 TCAAAAAGCCCAACT
1 TCAAAAAGACCAACT
8651513 TCAAAAAGACCAACT
1 TCAAAAAGACCAACT
8651528 T
1 T
8651529 TGAAACCCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.29, G:0.06, T:0.16
Consensus pattern (15 bp):
TCAAAAAGACCAACT
Found at i:8651740 original size:20 final size:20
Alignment explanation
Indices: 8651715--8651773 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 20
8651705 GGAGGCAACC
*
8651715 CAAGTTTTACATTTCCTTAT
1 CAAGTTTTAAATTTCCTTAT
** *
8651735 CAAGTTTTATGTTTCCTTGT
1 CAAGTTTTAAATTTCCTTAT
* *
8651755 TAAGTTTTAAATTTTCTTA
1 CAAGTTTTAAATTTCCTTA
8651774 GTATTTGTTT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.24, C:0.14, G:0.08, T:0.54
Consensus pattern (20 bp):
CAAGTTTTAAATTTCCTTAT
Found at i:8653897 original size:21 final size:21
Alignment explanation
Indices: 8653853--8653898 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
8653843 CCTTAGGCCT
*
8653853 CATTCAAATCCAAGAAGCATA
1 CATTCAAATCCAAGAAGAATA
8653874 CATTCAAATCCAAGAA-AATAA
1 CATTCAAATCCAAGAAGAAT-A
8653895 CATT
1 CATT
8653899 TTTTAGTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.50, C:0.22, G:0.07, T:0.22
Consensus pattern (21 bp):
CATTCAAATCCAAGAAGAATA
Found at i:8659443 original size:30 final size:27
Alignment explanation
Indices: 8659362--8659461 Score: 74
Period size: 28 Copynumber: 3.5 Consensus size: 27
8659352 GGGAGGCCCT
* *
8659362 GTTTGAGTTAGGAAATTAAGGTTGGTTA
1 GTTTGATTTAGG-GATTAAGGTTGGTTA
* * **
8659390 GATTGCATTTAGGGTTTCGGGTTGGTTGA
1 GTTTG-ATTTAGGGATTAAGGTTGGTT-A
*
8659419 GGGTTTGATTTAGGGATTAAGGTTGGTTT
1 --GTTTGATTTAGGGATTAAGGTTGGTTA
*
8659448 GTTTCGGTTTAGGG
1 GTTT-GATTTAGGG
8659462 TTGGTTTAGG
Statistics
Matches: 55, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
27 4 0.07
28 22 0.40
29 7 0.13
30 18 0.33
31 4 0.07
ACGTcount: A:0.18, C:0.03, G:0.37, T:0.42
Consensus pattern (27 bp):
GTTTGATTTAGGGATTAAGGTTGGTTA
Found at i:8659516 original size:7 final size:7
Alignment explanation
Indices: 8659504--8659672 Score: 91
Period size: 7 Copynumber: 26.3 Consensus size: 7
8659494 TAAGTTTGAG
8659504 TTAGGGT
1 TTAGGGT
8659511 TTAGGGT
1 TTAGGGT
*
8659518 TTAGAGT
1 TTAGGGT
*
8659525 TTAGAGT
1 TTAGGGT
*
8659532 TT--GAT
1 TTAGGGT
8659537 TTAGGGT
1 TTAGGGT
*
8659544 TTAAGGT
1 TTAGGGT
*
8659551 TT-GGAT
1 TTAGGGT
8659557 TTAGGGT
1 TTAGGGT
*
8659564 TTAGAGT
1 TTAGGGT
8659571 TT--GGT
1 TTAGGGT
8659576 TTA-GGT
1 TTAGGGT
**
8659582 TT-TTGT
1 TTAGGGT
*
8659588 TTAAGGT
1 TTAGGGT
* *
8659595 TTAAGAT
1 TTAGGGT
*
8659602 TTATGGT
1 TTAGGGT
8659609 TT-GGAGT
1 TTAGG-GT
8659616 TTA-GGT
1 TTAGGGT
8659622 TT--GGT
1 TTAGGGT
*
8659627 TTAGGAT
1 TTAGGGT
8659634 TTAGGG-
1 TTAGGGT
8659640 TTA-GGT
1 TTAGGGT
8659646 TTA-GGT
1 TTAGGGT
*
8659652 TTATGGT
1 TTAGGGT
8659659 TTA--GT
1 TTAGGGT
8659664 TTAGGGT
1 TTAGGGT
8659671 TT
1 TT
8659673 GGTGTTTACC
Statistics
Matches: 129, Mismatches: 19, Indels: 28
0.73 0.11 0.16
Matches are distributed among these distances:
5 19 0.15
6 30 0.23
7 80 0.62
ACGTcount: A:0.18, C:0.00, G:0.33, T:0.49
Consensus pattern (7 bp):
TTAGGGT
Found at i:8659532 original size:51 final size:52
Alignment explanation
Indices: 8659464--8659583 Score: 133
Period size: 51 Copynumber: 2.3 Consensus size: 52
8659454 GTTTAGGGTT
* *
8659464 GGTTTAGGATTTCGAGTTTGGCTTT-GGGTATAA-GTTT-GAGTTAGGGTTTAG
1 GGTTTAGG-TTTAGAGTTT-GATTTAGGGTATAAGGTTTGGAGTTAGGGTTTAG
* *
8659515 GGTTTAGAGTTTAGAGTTTGATTTAGGGTTTAAGGTTTGGATTTAGGGTTTAG
1 GGTTTAG-GTTTAGAGTTTGATTTAGGGTATAAGGTTTGGAGTTAGGGTTTAG
*
8659568 AGTTT-GGTTTAG-GTTT
1 GGTTTAGGTTTAGAGTTT
8659584 TTGTTTAAGG
Statistics
Matches: 60, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
50 8 0.13
51 29 0.48
52 6 0.10
53 17 0.28
ACGTcount: A:0.18, C:0.02, G:0.34, T:0.46
Consensus pattern (52 bp):
GGTTTAGGTTTAGAGTTTGATTTAGGGTATAAGGTTTGGAGTTAGGGTTTAG
Found at i:8659533 original size:33 final size:32
Alignment explanation
Indices: 8659496--8659580 Score: 100
Period size: 33 Copynumber: 2.6 Consensus size: 32
8659486 TTTGGGTATA
8659496 AGTTTGAGTTAGGGTTTAGGGTTTAGAGTTTAG
1 AGTTTGAGTTAGGGTTTAGGGTTTAGA-TTTAG
* * *
8659529 AGTTTGATTTAGGGTTTAAGGTTTGGATTTAG
1 AGTTTGAGTTAGGGTTTAGGGTTTAGATTTAG
* *
8659561 GGTTTAGAGTT-TGGTTTAGG
1 AGTTT-GAGTTAGGGTTTAGG
8659581 TTTTTGTTTA
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
32 16 0.36
33 28 0.64
ACGTcount: A:0.20, C:0.00, G:0.35, T:0.45
Consensus pattern (32 bp):
AGTTTGAGTTAGGGTTTAGGGTTTAGATTTAG
Found at i:8659559 original size:20 final size:20
Alignment explanation
Indices: 8659517--8659580 Score: 89
Period size: 19 Copynumber: 3.3 Consensus size: 20
8659507 GGGTTTAGGG
*
8659517 TTTAGAGTTTAGAGTTT-GA
1 TTTAGGGTTTAGAGTTTGGA
8659536 TTTAGGGTTTA-AGGTTTGGA
1 TTTAGGGTTTAGA-GTTTGGA
8659556 TTTAGGGTTTAGAGTTTGG-
1 TTTAGGGTTTAGAGTTTGGA
8659575 TTTAGG
1 TTTAGG
8659581 TTTTTGTTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
18 1 0.02
19 20 0.49
20 19 0.46
21 1 0.02
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.47
Consensus pattern (20 bp):
TTTAGGGTTTAGAGTTTGGA
Found at i:8659564 original size:13 final size:12
Alignment explanation
Indices: 8659508--8659675 Score: 90
Period size: 12 Copynumber: 13.2 Consensus size: 12
8659498 TTTGAGTTAG
8659508 GGTTTAGGGTTT
1 GGTTTAGGGTTT
*
8659520 AGAGTTTAGAGTTT
1 -G-GTTTAGGGTTT
*
8659534 GATTTAGGGTTT
1 GGTTTAGGGTTT
*
8659546 AAGGTTT-GGATTT
1 --GGTTTAGGGTTT
*
8659559 AGGGTTTAGAGTTT
1 --GGTTTAGGGTTT
*
8659573 GGTTTAGGTTTT
1 GGTTTAGGGTTT
* *
8659585 TGTTTAAGGTTT
1 GGTTTAGGGTTT
* *
8659597 AAGATTTATGGTTT
1 --GGTTTAGGGTTT
8659611 GGAGTTTA-GGTTT
1 -G-GTTTAGGGTTT
*
8659624 GGTTTAGGATTT
1 GGTTTAGGGTTT
*
8659636 AGGGTTA-GGTTT
1 -GGTTTAGGGTTT
*
8659648 AGGTTTATGGTTT
1 -GGTTTAGGGTTT
*
8659661 AGTTTAGGGTTT
1 GGTTTAGGGTTT
8659673 GGT
1 GGT
8659676 GTTTACCATG
Statistics
Matches: 120, Mismatches: 25, Indels: 21
0.72 0.15 0.13
Matches are distributed among these distances:
11 5 0.04
12 55 0.46
13 29 0.24
14 31 0.26
ACGTcount: A:0.18, C:0.00, G:0.33, T:0.49
Consensus pattern (12 bp):
GGTTTAGGGTTT
Found at i:8659617 original size:45 final size:44
Alignment explanation
Indices: 8659510--8659628 Score: 141
Period size: 45 Copynumber: 2.6 Consensus size: 44
8659500 TGAGTTAGGG
* ** *
8659510 TTTAGGGTTTAGAGTTTAGAGTTTGATTTAGGGTTTAAGGTTTGGA
1 TTTAGGGTTTAGAGTTTAG-GTTTGGTTT-TTGTTTAAGGTTTAGA
8659556 TTTAGGGTTTAGAGTTT-GGTTTAGGTTTTTGTTTAAGGTTTAAGA
1 TTTAGGGTTTAGAGTTTAGGTTT-GGTTTTTGTTTAAGGTTT-AGA
* *
8659601 TTTATGGTTTGGAGTTTAGGTTTGGTTT
1 TTTAGGGTTTAGAGTTTAGGTTTGGTTT
8659629 AGGATTTAGG
Statistics
Matches: 64, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
44 15 0.23
45 27 0.42
46 22 0.34
ACGTcount: A:0.18, C:0.00, G:0.31, T:0.50
Consensus pattern (44 bp):
TTTAGGGTTTAGAGTTTAGGTTTGGTTTTTGTTTAAGGTTTAGA
Found at i:8659629 original size:32 final size:32
Alignment explanation
Indices: 8659508--8659680 Score: 96
Period size: 32 Copynumber: 5.4 Consensus size: 32
8659498 TTTGAGTTAG
8659508 GGTTTAGGGTTTAGAGTTTA-GAGTTT--GATTTA
1 GGTTT-GGGTTTAG-GTTTATG-GTTTAAGATTTA
* *
8659540 GGGTTTAAGGTTT-GGATTTAGGGTTT-AGAGTTT-
1 -GGTTT-GGGTTTAGG-TTTATGGTTTAAGA-TTTA
* ** *
8659573 GGTTTAGGTTTTTGTTTAAGGTTTAAGATTTA
1 GGTTTGGGTTTAGGTTTATGGTTTAAGATTTA
*
8659605 TGGTTTGGAGTTTAGG-TT-TGGTTTAGGATTTA
1 -GGTTTGG-GTTTAGGTTTATGGTTTAAGATTTA
* *
8659637 GGGTTAGGTTTAGGTTTATGGTTT-AG-TTTA
1 GGTTTGGGTTTAGGTTTATGGTTTAAGATTTA
8659667 GGGTTTGGTGTTTA
1 -GGTTTGG-GTTTA
8659681 CCATGATTTT
Statistics
Matches: 114, Mismatches: 13, Indels: 27
0.74 0.08 0.18
Matches are distributed among these distances:
30 11 0.10
31 32 0.28
32 41 0.36
33 22 0.19
34 8 0.07
ACGTcount: A:0.18, C:0.00, G:0.33, T:0.49
Consensus pattern (32 bp):
GGTTTGGGTTTAGGTTTATGGTTTAAGATTTA
Found at i:8659666 original size:18 final size:17
Alignment explanation
Indices: 8659568--8659668 Score: 69
Period size: 18 Copynumber: 5.5 Consensus size: 17
8659558 TAGGGTTTAG
8659568 AGTTT-GGTTTAGGTTTT
1 AGTTTAGGTTTAGG-TTT
* *
8659585 TGTTTAAGGTTTAAGATTT
1 AGTTT-AGGTTT-AGGTTT
*
8659604 ATGGTTTGGAGTTTAGGTTT
1 A--GTTTAG-GTTTAGGTTT
* *
8659624 GGTTTAGGATTTAGGGTT
1 AGTTTAGG-TTTAGGTTT
8659642 AGGTTTAGGTTTATGGTTT
1 A-GTTTAGGTTTA-GGTTT
8659661 AGTTTAGG
1 AGTTTAGG
8659669 GTTTGGTGTT
Statistics
Matches: 65, Mismatches: 10, Indels: 17
0.71 0.11 0.18
Matches are distributed among these distances:
17 5 0.08
18 24 0.37
19 20 0.31
20 8 0.12
21 8 0.12
ACGTcount: A:0.18, C:0.00, G:0.32, T:0.50
Consensus pattern (17 bp):
AGTTTAGGTTTAGGTTT
Found at i:8659671 original size:19 final size:18
Alignment explanation
Indices: 8659516--8659672 Score: 80
Period size: 19 Copynumber: 8.6 Consensus size: 18
8659506 AGGGTTTAGG
*
8659516 GTTTAGAGTTTAGAGTTT-
1 GTTTAGGGTTTAG-GTTTA
*
8659534 GATTTAGGGTTTAAGGTTTG
1 G-TTTAGGGTTT-AGGTTTA
8659554 GATTTAGGGTTTA-G---A
1 G-TTTAGGGTTTAGGTTTA
*
8659569 GTTT--GGTTTAGGTTTTT
1 GTTTAGGGTTTAGG-TTTA
* *
8659586 GTTTAAGGTTTAAGATTTA
1 GTTTAGGGTTT-AGGTTTA
*
8659605 TGGTTT-GGAGTTTAGGTTTG
1 --GTTTAGG-GTTTAGGTTTA
* *
8659625 GTTTAGGATTTAGGGTTA
1 GTTTAGGGTTTAGGTTTA
8659643 GGTTTA-GGTTTATGGTTTA
1 -GTTTAGGGTTTA-GGTTTA
8659662 GTTTAGGGTTT
1 GTTTAGGGTTT
8659673 GGTGTTTACC
Statistics
Matches: 108, Mismatches: 13, Indels: 35
0.69 0.08 0.22
Matches are distributed among these distances:
12 6 0.06
13 1 0.01
14 3 0.03
15 1 0.01
17 4 0.04
18 24 0.22
19 39 0.36
20 22 0.20
21 8 0.07
ACGTcount: A:0.18, C:0.00, G:0.32, T:0.50
Consensus pattern (18 bp):
GTTTAGGGTTTAGGTTTA
Found at i:8661145 original size:142 final size:145
Alignment explanation
Indices: 8660923--8661275 Score: 357
Period size: 145 Copynumber: 2.5 Consensus size: 145
8660913 CTATATAGGA
* ** * *
8660923 CATTTTTGTAATTTCACACCTTCTGTGGTGCGATCAAGGTTTTTAATGCATA--AAAAACCATGA
1 CATTTTAGTAATTTCACACCTTCTAAGGTGCGATCAAGGTTTTTAAT--ATACCAAAAATCATAA
* *
8660986 AA-TAAATTCAAAACATGA-TAAAATG-TTTCACCAAAAATTAACCTTAGAAAGG-TCAATTTAC
64 AATTAAATTCAAAACATGACTAAAA-GCTTTCACAAAAAATCAACCTTAGAAAGGTTCAA-TTAC
* *
8661047 AAAAAT-GCCCTTAAATGG
127 AAAAATAGCCCTAAAAGGG
* *
8661065 CATTTTAGTAATTTCATACCTTCTAAGGTGCGATCAAGGGTTTTAATATACCAAAAATCATAAAA
1 CATTTTAGTAATTTCACACCTTCTAAGGTGCGATCAAGGTTTTTAATATACCAAAAATCATAAAA
* *** * * **
8661130 TTATA-T-AAAATCATGACTTGGAGCTTTTCACAAAAAATCAACCTTAGGAAGGTTGAATTATGA
66 TTAAATTCAAAA-CATGACTAAAAGC-TTTCACAAAAAATCAACCTTAGAAAGGTTCAATTACAA
8661193 AAATAGCCCTAAAAGGG
129 AAATAGCCCTAAAAGGG
* ** * *
8661210 CATTTTAGTAATTTCACACCCGT-TAAGGTAAGATCAAGGTTTTTAATGTACCAAAAATCATCAA
1 CATTTTAGTAATTTCACA-CCTTCTAAGGTGCGATCAAGGTTTTTAATATACCAAAAATCATAAA
8661274 AT
65 AT
8661276 AATGTTTGAA
Statistics
Matches: 175, Mismatches: 26, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
140 3 0.02
141 4 0.02
142 60 0.34
143 5 0.03
144 32 0.18
145 68 0.39
146 3 0.02
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.31
Consensus pattern (145 bp):
CATTTTAGTAATTTCACACCTTCTAAGGTGCGATCAAGGTTTTTAATATACCAAAAATCATAAAA
TTAAATTCAAAACATGACTAAAAGCTTTCACAAAAAATCAACCTTAGAAAGGTTCAATTACAAAA
ATAGCCCTAAAAGGG
Found at i:8661335 original size:145 final size:144
Alignment explanation
Indices: 8660819--8661278 Score: 366
Period size: 142 Copynumber: 3.2 Consensus size: 144
8660809 AATTTTTTGA
** * * **
8660819 TTTTAATGCACCAAAAATCATAAATTAATATCAAAAT-ATGATTTAGAAG-TTTTCATGAAAAAT
1 TTTTAATATACCAAAAATCATAAAATAATAT-AAAATCATGACTT-GAAGCTTTTCACAAAAAAT
* * * * * * * * *
8660882 CGATCTTGGGAAGGTCAAATTATGAAAAT-ACCTATATAGGACATTTTTGTAATTTCACACCTTC
64 CAACCTTAGGAAGGTCAAATTATAAAAATGCCCTA-AAAGGGCATTTTAGTAATTTCACACCGTC
** ** *
8660946 TGTGGTGCGATCAAGGT
128 TAAGGTAAGATCAAGGG
* * ** *
8660963 TTTTAATGCATA--AAAAACCATGAAATAA-ATTCAAAA-CATGA--T-AAAATGTTTCACCAAA
1 TTTTAAT--ATACCAAAAATCATAAAATAATA-T-AAAATCATGACTTGAAGCT-TTTCACAAAA
* * * * * * * *
8661021 AATTAACCTTAGAAAGGTCAATTTACAAAAATGCCCTTAAATGGCATTTTAGTAATTTCATACCT
61 AATCAACCTTAGGAAGGTCAAATTATAAAAATGCCCTAAAAGGGCATTTTAGTAATTTCACACCG
**
8661086 TCTAAGGTGCGATCAAGGG
126 TCTAAGGTAAGATCAAGGG
* *
8661105 TTTTAATATACCAAAAATCATAAAATTATATAAAATCATGACTTGGAGCTTTTCACAAAAAATCA
1 TTTTAATATACCAAAAATCATAAAATAATATAAAATCATGACTTGAAGCTTTTCACAAAAAATCA
** *
8661170 ACCTTAGGAAGGTTGAATTATGAAAATAGCCCTAAAAGGGCATTTTAGTAATTTCACACCCGT-T
66 ACCTTAGGAAGGTCAAATTATAAAAAT-GCCCTAAAAGGGCATTTTAGTAATTTCACA-CCGTCT
*
8661234 AAGGTAAGATCAAGGT
129 AAGGTAAGATCAAGGG
* *
8661250 TTTTAATGTACCAAAAATCATCAAATAAT
1 TTTTAATATACCAAAAATCATAAAATAAT
8661279 GTTTGAATAT
Statistics
Matches: 250, Mismatches: 50, Indels: 31
0.76 0.15 0.09
Matches are distributed among these distances:
140 5 0.02
141 5 0.02
142 97 0.39
143 5 0.02
144 65 0.26
145 69 0.28
146 4 0.02
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.31
Consensus pattern (144 bp):
TTTTAATATACCAAAAATCATAAAATAATATAAAATCATGACTTGAAGCTTTTCACAAAAAATCA
ACCTTAGGAAGGTCAAATTATAAAAATGCCCTAAAAGGGCATTTTAGTAATTTCACACCGTCTAA
GGTAAGATCAAGGG
Found at i:8664871 original size:2 final size:2
Alignment explanation
Indices: 8664864--8664898 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
8664854 ATCTTACCTT
8664864 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8664899 TTCCATCTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8667237 original size:7 final size:7
Alignment explanation
Indices: 8667220--8667256 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
8667210 AAATTTAATA
8667220 ATATT-T
1 ATATTAT
8667226 ATATTAT
1 ATATTAT
8667233 ATATTAT
1 ATATTAT
8667240 ATATTAT
1 ATATTAT
*
8667247 AGA-TAT
1 ATATTAT
8667253 ATAT
1 ATAT
8667257 AGGTTATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
6 10 0.37
7 17 0.63
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (7 bp):
ATATTAT
Found at i:8668157 original size:30 final size:30
Alignment explanation
Indices: 8668090--8668158 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
8668080 TTATCTTTTT
*
8668090 AAAAAA-TTTATGTAAGACATTAAAAATTC
1 AAAAAATTTTATGTAAAACATTAAAAATTC
** ** *
8668119 AAGTAATTTTATGTAAAATTTTGAAAATTC
1 AAAAAATTTTATGTAAAACATTAAAAATTC
8668149 AAAAAATTTT
1 AAAAAATTTT
8668159 CATCTTAAAT
Statistics
Matches: 31, Mismatches: 8, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
29 4 0.13
30 27 0.87
ACGTcount: A:0.51, C:0.04, G:0.07, T:0.38
Consensus pattern (30 bp):
AAAAAATTTTATGTAAAACATTAAAAATTC
Found at i:8669606 original size:42 final size:43
Alignment explanation
Indices: 8669532--8669612 Score: 112
Period size: 42 Copynumber: 1.9 Consensus size: 43
8669522 ATATTTAAAT
*
8669532 TAGATTTTGTTGATAACAATATTTGATTATTAT-TATTATTTA
1 TAGATTTTGTTGATAACAATATTTGATAATTATATATTATTTA
* *
8669574 TAGATTTTGTTGGTAACAATATATTTA-AATTATATATTA
1 TAGATTTTGTTGATAACAATAT-TTGATAATTATATATTA
8669613 AAAAAAAGAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
42 26 0.76
43 8 0.24
ACGTcount: A:0.36, C:0.02, G:0.10, T:0.52
Consensus pattern (43 bp):
TAGATTTTGTTGATAACAATATTTGATAATTATATATTATTTA
Found at i:8688103 original size:37 final size:37
Alignment explanation
Indices: 8688062--8688135 Score: 112
Period size: 37 Copynumber: 2.0 Consensus size: 37
8688052 AAGGCTTAAG
* * *
8688062 ATAGAAACCTCTACCTTTTGTAGTATCTTATCGAATC
1 ATAGAAACCTCTACCCTTTGTAGCATCTTACCGAATC
*
8688099 ATAGAAACTTCTACCCTTTGTAGCATCTTACCGAATC
1 ATAGAAACCTCTACCCTTTGTAGCATCTTACCGAATC
8688136 TCACTACAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.30, C:0.24, G:0.11, T:0.35
Consensus pattern (37 bp):
ATAGAAACCTCTACCCTTTGTAGCATCTTACCGAATC
Found at i:8690840 original size:147 final size:144
Alignment explanation
Indices: 8690542--8690873 Score: 375
Period size: 147 Copynumber: 2.3 Consensus size: 144
8690532 TTTAAAGCAT
* * *
8690542 CAAAAATCATGAAAGATTATGAAATTGAGATCTGAAAAG-TTTTGTGAAAATCCGAGCCGAGAAG
1 CAAAAATCATGAAATATTATGAAATTGAGATCTGAAAAGTTTTTGTGAAAATCCGAGACGAGAAA
* * *
8690606 GCCAAATTACAAAAATACCTCTATAAGGGTATTTTGATAACTTCACACCTCTCGGGTACTCCCTT
66 GCCAAATTACAAAAAAACCTCTAAAAGGGTATTTTGATAACTTCACACCTCTCGGGTACTCACTT
* *
8690671 TATTTCGAATGCAC
131 GATTTCAAATGCAC
* * * * ** *
8690685 CAAAAATCATGAAATATTATGTAATTAAGATTTGAAAAGTTTTTGTGAAATTTTGAGTATGAGAA
1 CAAAAATCATGAAATATTATGAAATTGAGATCTGAAAAGTTTTTGTGAAAATCCGAG-ACGAGAA
* * * * * *
8690750 AGCCAAATTACGAAAAAAACC-CTTAAAATGGTATTTTGATAATTTTACACTTTTTGAGGTACT-
65 AGCCAAATTAC-AAAAAAACCTC-TAAAAGGGTATTTTGATAACTTCACACCTCTCG-GGTACTC
8690813 ACTATGATTTCAAATGCAC
127 ACT-TGATTTCAAATGCAC
* *
8690832 TAAAAATCATGAAATGTTAT-AAATTTGAGATCTGAAAAGTTT
1 CAAAAATCATGAAATATTATGAAA-TTGAGATCTGAAAAGTTT
8690874 CACAAAAATT
Statistics
Matches: 156, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
143 35 0.22
144 14 0.09
145 16 0.10
146 38 0.24
147 53 0.34
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.32
Consensus pattern (144 bp):
CAAAAATCATGAAATATTATGAAATTGAGATCTGAAAAGTTTTTGTGAAAATCCGAGACGAGAAA
GCCAAATTACAAAAAAACCTCTAAAAGGGTATTTTGATAACTTCACACCTCTCGGGTACTCACTT
GATTTCAAATGCAC
Found at i:8691389 original size:16 final size:16
Alignment explanation
Indices: 8691359--8691423 Score: 64
Period size: 16 Copynumber: 4.2 Consensus size: 16
8691349 TTACTTTCTC
8691359 TTTT-CTTTTTT-TTT
1 TTTTGCTTTTTTGTTT
8691373 TTTTGCTTTTTTGTTT
1 TTTTGCTTTTTTGTTT
*
8691389 TGTTG-TTTTGTTGTTT
1 TTTTGCTTTT-TTGTTT
* * *
8691405 TTTGGTTTTTTTATTT
1 TTTTGCTTTTTTGTTT
8691421 TTT
1 TTT
8691424 ATTTATTTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
14 4 0.09
15 11 0.26
16 24 0.56
17 4 0.09
ACGTcount: A:0.02, C:0.03, G:0.12, T:0.83
Consensus pattern (16 bp):
TTTTGCTTTTTTGTTT
Found at i:8691664 original size:68 final size:68
Alignment explanation
Indices: 8691572--8692459 Score: 612
Period size: 68 Copynumber: 13.2 Consensus size: 68
8691562 TAACAACAAA
* * * * **
8691572 TCAAAAAATAAAAAGACTAAGATTGAACCATAAGTTAGAGAATAACGAGACAGGGATTGAATCGC
1 TCAAAAAATAAAAAGACTAGGATTGAACCATGAGTCAGAGAATAACGAGACAGGGATTGAACCAT
8691637 GAG
66 GAG
* * * * ** *
8691640 TCAGAAAATAAAAAAACTAGGATTGAACCATGAGTTAGAAAATAAAAAGACTA-GGATTGAACTA
1 TCAAAAAATAAAAAGACTAGGATTGAACCATGAGTCAGAGAATAACGAGAC-AGGGATTGAACCA
8691704 TGAG
65 TGAG
* * * * **
8691708 TTAGAGAATAACAAA-A-TAAGGATTGAACTATGAGTCAGAGAATAACGAGACAATGATTGAACC
1 TCAAAAAATAA-AAAGACT-AGGATTGAACCATGAGTCAGAGAATAACGAGACAGGGATTGAACC
8691771 ATGAG
64 ATGAG
* * * * * * * *
8691776 TCGAAAAACAAAAGAGACCAGGATTGACCCATGAGTCAAAAAATAACGAGATAGGGA-T-AACTA
1 TCAAAAAATAAAA-AGACTAGGATTGAACCATGAGTCAGAGAATAACGAGACAGGGATTGAACCA
* *
8691839 TAAA
65 TGAG
* ** * * * * * *
8691843 TCAAAAAATAAAAAGACCAAAATTGAACCGTGAGTCTA-AGAATAACAAAACAAGTATTAAACCA
1 TCAAAAAATAAAAAGACTAGGATTGAACCATGAGTC-AGAGAATAACGAGACAGGGATTGAACCA
*
8691907 CGAG
65 TGAG
* * * * ** * * **
8691911 TCAAAAAATAAAAGGAGACCAAGATTGACCCATGATTCAGAGAATAATAATATAGGGA-T-AATT
1 TCAAAAAATAAAA--AGACTAGGATTGAACCATGAGTCAGAGAATAACGAGACAGGGATTGAACC
*
8691974 GTGAG
64 ATGAG
* * * * * * *
8691979 TCAAAAAATAAAGAGA-TCGGGATTGAACCATGAGTCTGAGAATAACAAAATAGGGATTGAATCA
1 TCAAAAAATAAAAAGACT-AGGATTGAACCATGAGTCAGAGAATAACGAGACAGGGATTGAACCA
8692043 TGAG
65 TGAG
* * * * *
8692047 TCAAATAATAAAAGAGACCAAGATTGAACCGTGAGTCAGA-AA-AA-G-G-CA-GAATTGAACCA
1 TCAAAAAATAAAA-AGACTAGGATTGAACCATGAGTCAGAGAATAACGAGACAGGGATTGAACCA
*
8692106 CGAG
65 TGAG
* ** * * * * *
8692110 TTAAGCAATAAAAGAGACTAGGATTGAATCATGAGTCAAAGAATAACGAGATAGGGATCGAACCG
1 TCAAAAAATAAAA-AGACTAGGATTGAACCATGAGTCAGAGAATAACGAGACAGGGATTGAACCA
8692175 TGAG
65 TGAG
* * * * * * *
8692179 TCAAAAAATAAAAGAGACCAAGATTGAACCATGAGTTAGAGAATAATGAGATAGAGATTGAACTA
1 TCAAAAAATAAAA-AGACTAGGATTGAACCATGAGTCAGAGAATAACGAGACAGGGATTGAACCA
*
8692244 CGAG
65 TGAG
* * * **
8692248 TCAAAAAATAAAAGAGACTAGGATTGAACCATGAGTCAAAGAATAATGAGCCAGGGATTGAA-TG
1 TCAAAAAATAAAA-AGACTAGGATTGAACCATGAGTCAGAGAATAACGAGACAGGGATTGAACCA
8692312 TGAG
65 TGAG
* * * * ** *
8692316 TCAAAAAATAAAGGAGATTAGGATTGAACCATGAGTCAAAGAATAACGAGATAAAGATTGAACCG
1 TCAAAAAATAAA-AAGACTAGGATTGAACCATGAGTCAGAGAATAACGAGACAGGGATTGAACCA
**
8692381 CAAG
65 TGAG
* * *** * *
8692385 TC-AAAAAT----AGATTAGAATTGAATTGTGAGTCCGAGAATAATGAGACAGGGATTGAACCAT
1 TCAAAAAATAAAAAGACTAGGATTGAACCATGAGTCAGAGAATAACGAGACAGGGATTGAACCAT
8692445 GAG
66 GAG
8692448 TCAAAAAATAAA
1 TCAAAAAATAAA
8692460 GGAGACCAAG
Statistics
Matches: 642, Mismatches: 148, Indels: 61
0.75 0.17 0.07
Matches are distributed among these distances:
63 88 0.14
64 9 0.01
65 2 0.00
66 66 0.10
67 27 0.04
68 234 0.36
69 184 0.29
70 32 0.05
ACGTcount: A:0.48, C:0.12, G:0.21, T:0.19
Consensus pattern (68 bp):
TCAAAAAATAAAAAGACTAGGATTGAACCATGAGTCAGAGAATAACGAGACAGGGATTGAACCAT
GAG
Found at i:8691777 original size:34 final size:34
Alignment explanation
Indices: 8691572--8692754 Score: 405
Period size: 34 Copynumber: 35.4 Consensus size: 34
8691562 TAACAACAAA
* * *
8691572 TCAAAAAATAAAAAGACTAA-GATTGAACCATAAG
1 TCAAAGAATAAAGAGAC-AAGGATTGAACCATGAG
* * * * * **
8691606 TTAGAGAATAACGAGACAGGGATTGAATCGCGAG
1 TCAAAGAATAAAGAGACAAGGATTGAACCATGAG
* * *
8691640 TCAGAA-AATAAAAAAACTAGGATTGAACCATGAG
1 TCA-AAGAATAAAGAGACAAGGATTGAACCATGAG
* * * *
8691674 TTAGAA-AATAAAAAGACTAGGATTGAACTATGAG
1 TCA-AAGAATAAAGAGACAAGGATTGAACCATGAG
* * * * *
8691708 TTAGAGAATAACA-AAATAAGGATTGAACTATGAG
1 TCAAAGAATAA-AGAGACAAGGATTGAACCATGAG
* * *
8691742 TCAGAGAATAACGAGACAATGATTGAACCATGAG
1 TCAAAGAATAAAGAGACAAGGATTGAACCATGAG
* * *
8691776 TCGAAA-AACAAAAGAGACCAGGATTGACCCATGAG
1 TC-AAAGAA-TAAAGAGACAAGGATTGAACCATGAG
* * * * * * *
8691811 TCAAAAAATAACGAGATAGGGA-T-AACTATAAA
1 TCAAAGAATAAAGAGACAAGGATTGAACCATGAG
* * * *
8691843 TCAAAAAATAAAAAGACCAA-AATTGAACCGTGAG
1 TCAAAGAATAAAGAGA-CAAGGATTGAACCATGAG
* * * * *
8691877 TCTAAGAATAACA-AAACAAGTATTAAACCACGAG
1 TCAAAGAATAA-AGAGACAAGGATTGAACCATGAG
* * *
8691911 TCAAAAAATAAAAGGAGACCAA-GATTGACCCATGAT
1 TCAAAGAAT-AAA-GAGA-CAAGGATTGAACCATGAG
* * * * ***
8691947 TCAGAGAATAATA-ATATAGGGA-T-AATTGTGAG
1 TCAAAGAATAA-AGAGACAAGGATTGAACCATGAG
* *
8691979 TCAAAAAATAAAGAGATC-GGGATTGAACCATGAG
1 TCAAAGAATAAAGAGA-CAAGGATTGAACCATGAG
** * * * *
8692013 TCTGAGAATAACA-AAATAGGGATTGAATCATGAG
1 TCAAAGAATAA-AGAGACAAGGATTGAACCATGAG
* *
8692047 TCAAATAATAAAAGAGACCAA-GATTGAACCGTGAG
1 TCAAAGAAT-AAAGAGA-CAAGGATTGAACCATGAG
* *
8692082 TC--AGAA-AAAG-G-C-AGAATTGAACCACGAG
1 TCAAAGAATAAAGAGACAAGGATTGAACCATGAG
* * *
8692110 T-TAAGCAATAAAAGAGACTAGGATTGAATCATGAG
1 TCAAAG-AAT-AAAGAGACAAGGATTGAACCATGAG
* * * * *
8692145 TCAAAGAATAACGAGATAGGGATCGAACCGTGAG
1 TCAAAGAATAAAGAGACAAGGATTGAACCATGAG
*
8692179 TCAAAAAATAAAAGAGACCAA-GATTGAACCATGAG
1 TCAAAGAAT-AAAGAGA-CAAGGATTGAACCATGAG
* * * * * *
8692214 TTAGAGAATAATGAGA-TAGAGATTGAACTACGAG
1 TCAAAGAATAAAGAGACAAG-GATTGAACCATGAG
* *
8692248 TCAAAAAATAAAAGAGACTAGGATTGAACCATGAG
1 TCAAAGAAT-AAAGAGACAAGGATTGAACCATGAG
* * * **
8692283 TCAAAGAATAATGAGCCAGGGATTGAA-TGTGAG
1 TCAAAGAATAAAGAGACAAGGATTGAACCATGAG
* **
8692316 TCAAAAAATAAAGGAGATTAGGATTGAACCATGAG
1 TCAAAGAATAAA-GAGACAAGGATTGAACCATGAG
* * * ***
8692351 TCAAAGAATAACGAGATAAAGATTGAACCGCAAG
1 TCAAAGAATAAAGAGACAAGGATTGAACCATGAG
** * ***
8692385 TCAAA-AAT----AGATTAGAATTGAATTGTGAG
1 TCAAAGAATAAAGAGACAAGGATTGAACCATGAG
** * *
8692414 TCCGAGAATAATGAGACAGGGATTGAACCATGAG
1 TCAAAGAATAAAGAGACAAGGATTGAACCATGAG
* * * *
8692448 TCAAAAAATAAAGGAGACCAA-GATTAAATCGTGAG
1 TCAAAGAATAAA-GAGA-CAAGGATTGAACCATGAG
* ** * * * * *
8692483 TTAAAGAATAACCAAATAAAGATTGAACTATAAG
1 TCAAAGAATAAAGAGACAAGGATTGAACCATGAG
* ** *
8692517 TC--AG----AA-AGACTAGGATTGAGTCATAAG
1 TCAAAGAATAAAGAGACAAGGATTGAACCATGAG
* * *
8692544 TCAGAGAATAACGAGACAAGGATT-AAGC-TGTAAG
1 TCAAAGAATAAAGAGACAAGGATTGAACCATG--AG
* * * * *
8692578 TTATAGAATAATGAGATAAGGATTGAA-CTTCGAG
1 TCAAAGAATAAAGAGACAAGGATTGAACCAT-GAG
* * *
8692612 TCAAAAAATAAAAAAGACCAGGATTGAACCATGAG
1 TCAAAGAAT-AAAGAGACAAGGATTGAACCATGAG
* * ** *
8692647 TC--AG---AAAGA-TCAA-GATTGAGCTGTAAG
1 TCAAAGAATAAAGAGACAAGGATTGAACCATGAG
* * * * *
8692674 TTAGAGAATAACGAGAC-AGAGATTAAACCATAAG
1 TCAAAGAATAAAGAGACAAG-GATTGAACCATGAG
* * *
8692708 TCAAAAAATAAATGAGACTAGGATTAAACCATGAG
1 TCAAAGAATAAA-GAGACAAGGATTGAACCATGAG
*
8692743 TCAGAGAATAAA
1 TCAAAGAATAAA
8692755 AAATGATCAA
Statistics
Matches: 829, Mismatches: 242, Indels: 155
0.68 0.20 0.13
Matches are distributed among these distances:
27 28 0.03
28 16 0.02
29 27 0.03
30 6 0.01
31 5 0.01
32 52 0.06
33 39 0.05
34 411 0.50
35 208 0.25
36 34 0.04
37 3 0.00
ACGTcount: A:0.48, C:0.11, G:0.21, T:0.19
Consensus pattern (34 bp):
TCAAAGAATAAAGAGACAAGGATTGAACCATGAG
Found at i:8692733 original size:35 final size:35
Alignment explanation
Indices: 8692686--8692754 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
8692676 AGAGAATAAC
8692686 GAGACAGAGATTAAACCATAAGTCAAAAAATAAAT
1 GAGACAGAGATTAAACCATAAGTCAAAAAATAAAT
* * *
8692721 GAGACTAG-GATTAAACCATGAGTCAGAGAATAAA
1 GAGAC-AGAGATTAAACCATAAGTCAAAAAATAAA
8692755 AAATGATCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
35 28 0.93
36 2 0.07
ACGTcount: A:0.52, C:0.12, G:0.19, T:0.17
Consensus pattern (35 bp):
GAGACAGAGATTAAACCATAAGTCAAAAAATAAAT
Found at i:8692756 original size:130 final size:127
Alignment explanation
Indices: 8692314--8692756 Score: 340
Period size: 130 Copynumber: 3.4 Consensus size: 127
8692304 ATTGAATGTG
* * * *
8692314 AGTCAAAAAATAAAGGAGATTAGGATTGAACCATGAGTCAAAGAATAACGAGATAAAGATTGAAC
1 AGTCAAAAAATAAAGGAGACTAGGATTAAACCATGAGTCAAAGAATAA--AAAGAAAGATTGAAC
** * * * * * * * *
8692379 CGCAAGTCAAAAATAGAT-TAGAATTGAATTGTGAGTCCGAGAATAATGAGACAGGGATTGAACC
64 CATAAGTC-AGAA-AGATCAAG-ATTG-AGTGTAAGTCAGAGAATAACGAGACAGAGATTAAACC
*
8692443 ATG
125 ATA
* * * * * *
8692446 AGTCAAAAAATAAAGGAGACCAAGATTAAATCGTGAGTTAAAGAATAACCAAATAAAGATTGAAC
1 AGTCAAAAAATAAAGGAGACTAGGATTAAACCATGAGTCAAAGAATAA--AAAGAAAGATTGAAC
* * * * **
8692511 TATAAGTCAGAAAGA-CTAGGATTGAGTCATAAGTCAGAGAATAACGAGACA-AGGATTAAGCTG
64 CATAAGTCAGAAAGATC-AAGATTGAGT-GTAAGTCAGAGAATAACGAGACAGA-GATTAAACCA
8692574 TA
126 TA
* * * * * * * *
8692576 AGTTATAGAAT-AATGAGA-TAAGGATTGAA-CTTCGAGTCAAAAAATAAAAAAGACCAGGATTG
1 AGTCAAAAAATAAAGGAGACT-AGGATTAAACCAT-GAGTCAAAGAAT-AAAAAGA--AAGATTG
* *
8692638 AACCATGAGTCAGAAAGATCAAGATTGAGCTGTAAGTTAGAGAATAACGAGACAGAGATTAAACC
61 AACCATAAGTCAGAAAGATCAAGATTGAG-TGTAAGTCAGAGAATAACGAGACAGAGATTAAACC
8692703 ATA
125 ATA
* *
8692706 AGTCAAAAAATAAATGAGACTAGGATTAAACCATGAGTCAGAGAATAAAAA
1 AGTCAAAAAATAAAGGAGACTAGGATTAAACCATGAGTCAAAGAATAAAAA
8692757 ATGATCAAAA
Statistics
Matches: 243, Mismatches: 53, Indels: 32
0.74 0.16 0.10
Matches are distributed among these distances:
128 6 0.02
129 25 0.10
130 116 0.48
131 32 0.13
132 64 0.26
ACGTcount: A:0.48, C:0.11, G:0.21, T:0.20
Consensus pattern (127 bp):
AGTCAAAAAATAAAGGAGACTAGGATTAAACCATGAGTCAAAGAATAAAAAGAAAGATTGAACCA
TAAGTCAGAAAGATCAAGATTGAGTGTAAGTCAGAGAATAACGAGACAGAGATTAAACCATA
Found at i:8692856 original size:22 final size:22
Alignment explanation
Indices: 8692797--8692919 Score: 97
Period size: 22 Copynumber: 5.6 Consensus size: 22
8692787 TAAGACTCGG
* * *
8692797 TAATCTGAGTTTATGTGCCAGC
1 TAATCTGGGCTTATATGCCAGC
**
8692819 TAATCCTAAGCTTATATGCCAGC
1 TAAT-CTGGGCTTATATGCCAGC
* *
8692842 TAATTTGGGCTTATATGCCAAC
1 TAATCTGGGCTTATATGCCAGC
* *
8692864 TAATCTGGG-TTCTTATGCCAGT
1 TAATCTGGGCTT-ATATGCCAGC
* * *
8692886 TAATCTGGAC-TCTGTGCCAGC
1 TAATCTGGGCTTATATGCCAGC
*
8692907 TAATCTAGGCTTA
1 TAATCTGGGCTTA
8692920 ATTTTAATCT
Statistics
Matches: 79, Mismatches: 18, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
21 17 0.22
22 43 0.54
23 19 0.24
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (22 bp):
TAATCTGGGCTTATATGCCAGC
Found at i:8693180 original size:18 final size:18
Alignment explanation
Indices: 8693157--8693201 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
8693147 CAAATGTTGT
* *
8693157 GAATGCAAATGTCGATAC
1 GAATGCAAATATCAATAC
8693175 GAATGCAAATATCAATAC
1 GAATGCAAATATCAATAC
8693193 GAATGCAAA
1 GAATGCAAA
8693202 AAGTTAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.47, C:0.16, G:0.18, T:0.20
Consensus pattern (18 bp):
GAATGCAAATATCAATAC
Found at i:8693251 original size:22 final size:22
Alignment explanation
Indices: 8693226--8693350 Score: 135
Period size: 22 Copynumber: 5.6 Consensus size: 22
8693216 AAGATGACCA
* *
8693226 CTAATCTGGGTTTATGTACCAG
1 CTAATCTGGGCTTATGTGCCAG
**
8693248 CTAATCTTGGGCTTATGTGGTAG
1 CTAATC-TGGGCTTATGTGCCAG
* *
8693271 CTAATCTAGGCTCATGTGCCAG
1 CTAATCTGGGCTTATGTGCCAG
* *
8693293 CTAATCTGGGCTTATATGCCAA
1 CTAATCTGGGCTTATGTGCCAG
* *
8693315 CTGATCTGGG-TTCATGTGCCAA
1 CTAATCTGGGCTT-ATGTGCCAG
8693337 CTAATCTGGGCTTA
1 CTAATCTGGGCTTA
8693351 ATTTTAATCT
Statistics
Matches: 85, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
21 2 0.02
22 63 0.74
23 20 0.24
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.34
Consensus pattern (22 bp):
CTAATCTGGGCTTATGTGCCAG
Found at i:8693330 original size:44 final size:44
Alignment explanation
Indices: 8693225--8693350 Score: 153
Period size: 44 Copynumber: 2.8 Consensus size: 44
8693215 AAAGATGACC
* * * **
8693225 ACTAATCTGGGTTTATGTACCAGCTAATCTTGGGCTTATGTGGTA
1 ACTAATCTGGGTTCATGTGCCAGCTAATC-TGGGCTTATATGCCA
* * *
8693270 GCTAATCTAGGCTCATGTGCCAGCTAATCTGGGCTTATATGCCA
1 ACTAATCTGGGTTCATGTGCCAGCTAATCTGGGCTTATATGCCA
* *
8693314 ACTGATCTGGGTTCATGTGCCAACTAATCTGGGCTTA
1 ACTAATCTGGGTTCATGTGCCAGCTAATCTGGGCTTA
8693351 ATTTTAATCT
Statistics
Matches: 68, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
44 44 0.65
45 24 0.35
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (44 bp):
ACTAATCTGGGTTCATGTGCCAGCTAATCTGGGCTTATATGCCA
Found at i:8693595 original size:425 final size:424
Alignment explanation
Indices: 8692797--8693597 Score: 1030
Period size: 430 Copynumber: 1.9 Consensus size: 424
8692787 TAAGACTCGG
* * * *
8692797 TAATCTGAGTTTATGTGCCAGCTAATCCTAAGCTTATATGCCAGCTAATTTGGGCTTATATGCCA
1 TAATCTGAGTTTATGTACCAGCTAATCCTAAGCTTATATGCCAGCTAATCTAGGCTCATATGCCA
* ** *
8692862 ACTAATCTGGGTTCTTATGCCAGTTAATCTGGACTCTGTGCCAGCTAATCTAGGCTTAATTTTAA
66 ACTAATCTGGGTTCATATGCCAACTAATCTGGACTCTGTGCCAACTAATCTAGGCTTAATTTTAA
* * *
8692927 TCTTATATCATATCTTATTTTCAACAATCCCTTCATTTTTTACAAAACTTTTCAAAGCTTTTTTT
131 TCTTATATCATATCTCATTTTCAACAATCCCTTCACTTTTTACAAAACTTTTCAAAGC--TCTTT
8692992 TTTTTGACATTTTGGTCTCTTATCAAACTATTTTATTTCTTTTTTATCATCTTTCCATGATAGAA
194 TTTTTGACATTTTGGTCTCTTATCAAACTATTTTATTTCTTTTTTATCATCTTTCCATGATAGAA
*
8693057 TTCATTCTCTCTTTTTTTTTGCCCCTTTTTTTCTCTTTCTAATTTCACAAAGTTGATAAATATAA
259 TTCATTCTCTCTTTTTTTTT----CTTTTTTTCTCTTTCTAATTTCACAAAGTTGACAAATATAA
8693122 TCATGATACAAATGTTTATTTCCATCAAATGTTGTGAATGCAAATGTCGATACGAATGCAAATAT
320 TCATGATACAAATGTTTATTTCCATCAAATGTTGTGAATGCAAATGTCGATACGAATGCAAATAT
8693187 CAATACGAATGCAAAAAGTTAAAAAATAAAAGATGACCAC
385 CAATACGAATGCAAAAAGTTAAAAAATAAAAGATGACCAC
* * ** * ** *
8693227 TAATCTGGGTTTATGTACCAGCTAATCTTGGGCTTATGTGGTAGCTAATCTAGGCTCATGTGCCA
1 TAATCTGAGTTTATGTACCAGCTAATCCTAAGCTTATATGCCAGCTAATCTAGGCTCATATGCCA
* * ** *
8693292 GCTAATCTGGGCTT-ATATGCCAACTGATCTGGGTTCATGTGCCAACTAATCTGGGCTTAATTTT
66 ACTAATCTGGG-TTCATATGCCAACTAATCTGGACTC-TGTGCCAACTAATCTAGGCTTAATTTT
* * *** * *
8693356 AATCTTGTATCATATCTCATTTTTTAACAATTTTTTCACTTTTTATAGAACTTTTCAAA-C-CTT
129 AATCTTATATCATATCTCA-TTTTCAACAATCCCTTCACTTTTTACAAAACTTTTCAAAGCTCTT
* * *
8693419 TTTTTTGACATTTTGGTCT-TCTATCAAACT-TTTTTTTTACTTTTTTCTCATCTTTCCATTATA
193 TTTTTTGACATTTTGGTCTCT-TATCAAACTATTTTATTT-CTTTTTTATCATCTTTCCATGATA
* *
8693482 GACTTTC-TT-T-T-TTTTACCTTTTT-TTCTTTTTCTCTTTCTAATATTTACAAAGTTGACAAA
256 GA-ATTCATTCTCTCTTTT---TTTTTCTT-TTTTTCTCTTTCTAAT-TTCACAAAGTTGACAAA
8693542 TATAATCATGATACAAATGTTTATTTCCATCAAATGATT-TGAATGCAAATGTCGAT
315 TATAATCATGATACAAATGTTTATTTCCATCAAATG-TTGTGAATGCAAATGTCGAT
8693598 GTGAATACAA
Statistics
Matches: 322, Mismatches: 37, Indels: 29
0.83 0.10 0.07
Matches are distributed among these distances:
423 2 0.01
424 16 0.05
425 72 0.22
426 3 0.01
427 9 0.03
428 61 0.19
429 3 0.01
430 79 0.25
431 45 0.14
432 32 0.10
ACGTcount: A:0.27, C:0.18, G:0.12, T:0.44
Consensus pattern (424 bp):
TAATCTGAGTTTATGTACCAGCTAATCCTAAGCTTATATGCCAGCTAATCTAGGCTCATATGCCA
ACTAATCTGGGTTCATATGCCAACTAATCTGGACTCTGTGCCAACTAATCTAGGCTTAATTTTAA
TCTTATATCATATCTCATTTTCAACAATCCCTTCACTTTTTACAAAACTTTTCAAAGCTCTTTTT
TTTGACATTTTGGTCTCTTATCAAACTATTTTATTTCTTTTTTATCATCTTTCCATGATAGAATT
CATTCTCTCTTTTTTTTTCTTTTTTTCTCTTTCTAATTTCACAAAGTTGACAAATATAATCATGA
TACAAATGTTTATTTCCATCAAATGTTGTGAATGCAAATGTCGATACGAATGCAAATATCAATAC
GAATGCAAAAAGTTAAAAAATAAAAGATGACCAC
Found at i:8693747 original size:24 final size:24
Alignment explanation
Indices: 8693715--8693778 Score: 92
Period size: 24 Copynumber: 2.6 Consensus size: 24
8693705 TACCGATACC
**
8693715 ATGATGCAAATGCAAATGTCTTAT
1 ATGATGCAAATGCAAACATCTTAT
8693739 ATGATGCAAATGCAAACATCTTAT
1 ATGATGCAAATGCAAACATCTTAT
*
8693763 ATAAGTGCAAATGCAA
1 ATGA-TGCAAATGCAA
8693779 GTGATGCAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
24 25 0.69
25 11 0.31
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (24 bp):
ATGATGCAAATGCAAACATCTTAT
Found at i:8694013 original size:20 final size:20
Alignment explanation
Indices: 8693988--8694030 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
8693978 AGTGATGCAA
*
8693988 ATGCAAATATCTTTTTCATG
1 ATGCAAATACCTTTTTCATG
*
8694008 ATGCAAATGCCTTTTTCATG
1 ATGCAAATACCTTTTTCATG
8694028 ATG
1 ATG
8694031 TACATGTAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (20 bp):
ATGCAAATACCTTTTTCATG
Found at i:8695627 original size:5 final size:5
Alignment explanation
Indices: 8695617--8695712 Score: 54
Period size: 5 Copynumber: 18.6 Consensus size: 5
8695607 CACCCATTCA
* * * *
8695617 TTTCT TTTCT TTT-T TCTTCT TTTAT TTT-T TTTCC TTTCA TTCCAT TTT-T
1 TTTCT TTTCT TTTCT T-TTCT TTTCT TTTCT TTTCT TTTCT TTTC-T TTTCT
* * *
8695666 TTTCCT TTTGT TTTCTT TTATGCT TTTTT TTTCT TTTTT TTTCT TTT
1 TTT-CT TTTCT TTTC-T TT-T-CT TTTCT TTTCT TTTCT TTTCT TTT
8695713 TTCACTAAGT
Statistics
Matches: 70, Mismatches: 12, Indels: 18
0.70 0.12 0.18
Matches are distributed among these distances:
4 10 0.14
5 43 0.61
6 12 0.17
7 4 0.06
8 1 0.01
ACGTcount: A:0.04, C:0.16, G:0.02, T:0.78
Consensus pattern (5 bp):
TTTCT
Found at i:8695713 original size:20 final size:20
Alignment explanation
Indices: 8695621--8695714 Score: 59
Period size: 18 Copynumber: 4.5 Consensus size: 20
8695611 CATTCATTTC
*
8695621 TTTTCTTTTTTCTTCTTTTAT
1 TTTTCTTTTTTTTTCTTTT-T
*
8695642 TTTT-TTTCCTTTCATTCCATTTTT
1 TTTTCTTT--TTT--TTTC-TTTTT
* *
8695666 TTTCCTTTTGTTTTC--TTT
1 TTTTCTTTTTTTTTCTTTTT
* *
8695684 TATGCTTTTTTTTTCTTTTT
1 TTTTCTTTTTTTTTCTTTTT
8695704 TTTTCTTTTTT
1 TTTTCTTTTTT
8695715 CACTAAGTGG
Statistics
Matches: 55, Mismatches: 10, Indels: 17
0.67 0.12 0.21
Matches are distributed among these distances:
18 15 0.27
20 15 0.27
21 7 0.13
22 3 0.05
23 2 0.04
24 6 0.11
25 7 0.13
ACGTcount: A:0.04, C:0.15, G:0.02, T:0.79
Consensus pattern (20 bp):
TTTTCTTTTTTTTTCTTTTT
Found at i:8696572 original size:23 final size:23
Alignment explanation
Indices: 8696529--8696573 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
8696519 CTCTTTTTTG
*
8696529 TTTTTATTTTTATTTTCATCATT
1 TTTTTATTTTTATTTACATCATT
8696552 TTTTTATTTTTA-TTACAATCAT
1 TTTTTATTTTTATTTAC-ATCAT
8696574 CAATAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 3 0.15
23 17 0.85
ACGTcount: A:0.22, C:0.09, G:0.00, T:0.69
Consensus pattern (23 bp):
TTTTTATTTTTATTTACATCATT
Found at i:8699037 original size:21 final size:21
Alignment explanation
Indices: 8699013--8699052 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
8699003 TTATGATGTG
8699013 TATCAAAT-AGGATGCATGTAC
1 TATC-AATGAGGATGCATGTAC
*
8699034 TATCTATGAGGATGCATGT
1 TATCAATGAGGATGCATGT
8699053 GATGGGTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.33
Consensus pattern (21 bp):
TATCAATGAGGATGCATGTAC
Found at i:8700183 original size:26 final size:26
Alignment explanation
Indices: 8700134--8700183 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
8700124 TGAAAAATTA
** *
8700134 AAATAAAAGGAATTAAATTAAATATC
1 AAATAAAACCAATTAAATCAAATATC
*
8700160 AAATAAAACCAATTAAATCCAATA
1 AAATAAAACCAATTAAATCAAATA
8700184 ATTATTCATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.62, C:0.10, G:0.04, T:0.24
Consensus pattern (26 bp):
AAATAAAACCAATTAAATCAAATATC
Found at i:8703427 original size:145 final size:144
Alignment explanation
Indices: 8703094--8703436 Score: 386
Period size: 145 Copynumber: 2.4 Consensus size: 144
8703084 TGAAAATCCA
* *
8703094 AGCTCGAAAAAGTCAAATTACGAAATACTCTTATAAGGGTATTTTGGTAATTTCACACTTTTCGG
1 AGCTCGAGAAAGTCAAATTACGAAATACCCTTATAAGGGTATTTTGGTAATTTCACACTTTTCGG
* * *
8703159 GAAATTGCTGTGTGTTCGGAATAACCAAAAATCATGAAATATTATAGAATTAAGATCTAAAAAGT
66 GAAACTGCTGTATGTTCGAAATAACCAAAAATCATGAAATATTATAGAATTAAGATCTAAAAAGT
* ** * *
8703224 TTTGTGAAATTTTG
131 CTCATAAAAATTTG
* * * * * * * ** *
8703238 AGCTCGGGAAAGCCAAATTATGGAAATACCCCTATTATGATATTTTGGTAATTTCACGTTTTTTG
1 AGCTCGAGAAAGTCAAATTA-CGAAATACCCTTATAAGGGTATTTTGGTAATTTCACACTTTTCG
* * * *
8703303 GGATACTGCTGTAAT-TT-TAAATGCACCAAAAATCATGAAATGTTATA-AAGTTAAGATCTAAA
65 GGAAACTGCTGT-ATGTTCGAAAT-AACCAAAAATCATGAAATATTATAGAA-TTAAGATCTAAA
8703365 AAGTCTCATAAAAATTTG
127 AAGTCTCATAAAAATTTG
* *
8703383 AGCTCGAGAATGTCAAATTACAAAATACCCTTTATAAGGGTATTTTGGTAATTT
1 AGCTCGAGAAAGTCAAATTACGAAATACCC-TTATAAGGGTATTTTGGTAATTT
8703437 TGCCCTTTCT
Statistics
Matches: 161, Mismatches: 33, Indels: 9
0.79 0.16 0.04
Matches are distributed among these distances:
144 30 0.19
145 130 0.81
146 1 0.01
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.34
Consensus pattern (144 bp):
AGCTCGAGAAAGTCAAATTACGAAATACCCTTATAAGGGTATTTTGGTAATTTCACACTTTTCGG
GAAACTGCTGTATGTTCGAAATAACCAAAAATCATGAAATATTATAGAATTAAGATCTAAAAAGT
CTCATAAAAATTTG
Found at i:8703971 original size:25 final size:25
Alignment explanation
Indices: 8703943--8703996 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
8703933 AAACAACGCC
8703943 TAAACAT-AAGCAAGAAATGAAAGCT
1 TAAACATGAA-CAAGAAATGAAAGCT
***
8703968 TAAACATGAATTGGAAATGAAAGCT
1 TAAACATGAACAAGAAATGAAAGCT
8703993 TAAA
1 TAAA
8703997 TGTGCAACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 23 0.92
26 2 0.08
ACGTcount: A:0.54, C:0.09, G:0.17, T:0.20
Consensus pattern (25 bp):
TAAACATGAACAAGAAATGAAAGCT
Found at i:8710245 original size:70 final size:70
Alignment explanation
Indices: 8710127--8710271 Score: 200
Period size: 70 Copynumber: 2.1 Consensus size: 70
8710117 TTAAAAGTGT
* **
8710127 AGTAATTGAGTCAAGTAATTTAAAAAAAAAACTCAATTACTACGTTTCTTTTAATTAAATGTTGT
1 AGTAATTGAGTCAAGTAATTTAAAAAAAAAACTCAATTACTACATTTCTTTTAATTAAACATTGT
*
8710192 AATTG
66 AATTA
* *** * *
8710197 AGTAATTGAGTTAAGTAATTTTTTAAAAAAACTTAATTACTGCATTTCTTTTAATTAAACATTGT
1 AGTAATTGAGTCAAGTAATTTAAAAAAAAAACTCAATTACTACATTTCTTTTAATTAAACATTGT
8710262 AATTA
66 AATTA
8710267 AGTAA
1 AGTAA
8710272 AGTAAAATTT
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
70 65 1.00
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (70 bp):
AGTAATTGAGTCAAGTAATTTAAAAAAAAAACTCAATTACTACATTTCTTTTAATTAAACATTGT
AATTA
Found at i:8710283 original size:62 final size:61
Alignment explanation
Indices: 8710198--8710367 Score: 173
Period size: 62 Copynumber: 2.7 Consensus size: 61
8710188 TTGTAATTGA
* * ** **
8710198 GTAATTGAGTTAAGTAATTTTTTAAA-AAAACTTAATTACTGCATTTCTTTTAATTAAACATT
1 GTAATTAAGTAAAGTAAAATTTTAAAGAAAAC--AATTACTGCATTTCTTTTAATTAAACAAC
* * ** *
8710260 GTAATTAAGTAAAGTAAAATTTTAAATGAAAGCAATTATTGTGTTTCTTTTAATTAAGCAAC
1 GTAATTAAGTAAAGTAAAATTTTAAA-GAAAACAATTACTGCATTTCTTTTAATTAAACAAC
*
8710322 GTAATTAAGTAAAGTAAAATTTTAAACGAAACCAATTA-TGACATTT
1 GTAATTAAGTAAAGTAAAATTTTAAA-GAAAACAATTACTG-CATTT
8710368 ATTTATTAAT
Statistics
Matches: 90, Mismatches: 15, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
61 2 0.02
62 84 0.93
64 4 0.04
ACGTcount: A:0.42, C:0.08, G:0.11, T:0.39
Consensus pattern (61 bp):
GTAATTAAGTAAAGTAAAATTTTAAAGAAAACAATTACTGCATTTCTTTTAATTAAACAAC
Found at i:8710890 original size:19 final size:19
Alignment explanation
Indices: 8710860--8710941 Score: 56
Period size: 19 Copynumber: 3.9 Consensus size: 19
8710850 ACCCTAAAAA
*
8710860 CAAAATCCTAAACTTAACC
1 CAAAACCCTAAACTTAACC
*
8710879 CTAAACCCTAAAAAAAACCTTCAACC
1 CAAAACCCT-----AAA-CTT-AACC
*
8710905 CAAAATCCTAAACTTAACC
1 CAAAACCCTAAACTTAACC
* *
8710924 CAAAACCCAAAATTTAAC
1 CAAAACCCTAAACTTAAC
8710942 TCTAAACCAT
Statistics
Matches: 49, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
19 26 0.53
20 3 0.06
21 3 0.06
24 3 0.06
25 3 0.06
26 11 0.22
ACGTcount: A:0.50, C:0.32, G:0.00, T:0.18
Consensus pattern (19 bp):
CAAAACCCTAAACTTAACC
Found at i:8710982 original size:52 final size:51
Alignment explanation
Indices: 8710926--8711023 Score: 117
Period size: 52 Copynumber: 1.9 Consensus size: 51
8710916 ACTTAACCCA
* * * * *
8710926 AAACCC-AAAATTTAACTCTAAACCATTAATCCTAAACCTTTAAACCTACATT
1 AAACCCTAAAA-TCAACTCAAAACCATAAAACCAAAACC-TTAAACCTACATT
*
8710978 AAACCCTAAAATCAACTCAAAACCCTAAAACCAAAACCTTAAACCT
1 AAACCCTAAAATCAACTCAAAACCATAAAACCAAAACCTTAAACCT
8711024 TAAAACCAAC
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
51 8 0.21
52 27 0.69
53 4 0.10
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.22
Consensus pattern (51 bp):
AAACCCTAAAATCAACTCAAAACCATAAAACCAAAACCTTAAACCTACATT
Found at i:8711042 original size:19 final size:18
Alignment explanation
Indices: 8710958--8711046 Score: 70
Period size: 19 Copynumber: 4.6 Consensus size: 18
8710948 CCATTAATCC
* *
8710958 TAAACCTTTAAACCTACAT
1 TAAACCTTAAAACCAAC-T
* *
8710977 TAAACCCTAAAATCAACT
1 TAAACCTTAAAACCAACT
* *
8710995 CAAAACCCTAAAACCAAAACCT
1 -TAAACCTTAAAACC--AA-CT
8711017 TAAACCTTAAAACCAACT
1 TAAACCTTAAAACCAACT
8711035 TCAAACCTTAAA
1 T-AAACCTTAAA
8711047 CCTAACCTAA
Statistics
Matches: 57, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
18 4 0.07
19 37 0.65
21 14 0.25
22 2 0.04
ACGTcount: A:0.49, C:0.29, G:0.00, T:0.21
Consensus pattern (18 bp):
TAAACCTTAAAACCAACT
Found at i:8714136 original size:23 final size:23
Alignment explanation
Indices: 8714110--8714202 Score: 78
Period size: 23 Copynumber: 3.9 Consensus size: 23
8714100 AAACGAACTC
*
8714110 GTTCATGAACATTAAACGAATAT
1 GTTCATGAACATTAAACAAATAT
** * *
8714133 GTTCAACAATATATATAAACAAACAT
1 GTTC-ATGA-ACAT-TAAACAAATAT
* *
8714159 GTTTATGAACAATAAACAAATAT
1 GTTCATGAACATTAAACAAATAT
* *
8714182 GTTCATGAATAATAAACAAAT
1 GTTCATGAACATTAAACAAAT
8714203 CATAAGCAAT
Statistics
Matches: 54, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
23 33 0.61
24 4 0.07
25 5 0.09
26 12 0.22
ACGTcount: A:0.51, C:0.12, G:0.09, T:0.29
Consensus pattern (23 bp):
GTTCATGAACATTAAACAAATAT
Found at i:8715648 original size:46 final size:45
Alignment explanation
Indices: 8715566--8715699 Score: 182
Period size: 46 Copynumber: 3.0 Consensus size: 45
8715556 TCAAATAAGA
* * * * *
8715566 ATTAGAATTTGTCTCATATATATAATA-TATATTTTAATATATTT
1 ATTACAATTTGTCCCATATATATAATATTTTTTTTTAATTTATTT
8715610 ATTACAATTTGTCCCATATATATAATATTTTCTTTTTAATTTATTT
1 ATTACAATTTGTCCCATATATATAATATTTT-TTTTTAATTTATTT
*
8715656 ATTACAATTTGTCCCATATATATTAT-TTTATTTTTTAATTTATT
1 ATTACAATTTGTCCCATATATATAATATTT-TTTTTTAATTTATT
8715700 CAAGATTGCT
Statistics
Matches: 81, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
44 25 0.31
45 18 0.22
46 38 0.47
ACGTcount: A:0.33, C:0.08, G:0.03, T:0.56
Consensus pattern (45 bp):
ATTACAATTTGTCCCATATATATAATATTTTTTTTTAATTTATTT
Found at i:8718817 original size:20 final size:20
Alignment explanation
Indices: 8718788--8718826 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8718778 CAATGACTGG
*
8718788 TGTGGCTTATGGATTGTTAT
1 TGTGGCTTATGGACTGTTAT
*
8718808 TGTGGTTTATGGACTGTTA
1 TGTGGCTTATGGACTGTTA
8718827 GTTTGTGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.31, T:0.49
Consensus pattern (20 bp):
TGTGGCTTATGGACTGTTAT
Found at i:8723719 original size:26 final size:26
Alignment explanation
Indices: 8723688--8723740 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
8723678 TTTAACTTTT
*
8723688 AATTTTT-TATTTTTTTAAATTAGAA
1 AATTTTTCTAATTTTTTAAATTAGAA
8723713 AATTTTTCTAATTTTTTAAATTAGAA
1 AATTTTTCTAATTTTTTAAATTAGAA
8723739 AA
1 AA
8723741 AATTTTTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.55
Consensus pattern (26 bp):
AATTTTTCTAATTTTTTAAATTAGAA
Found at i:8723750 original size:26 final size:25
Alignment explanation
Indices: 8723691--8723751 Score: 86
Period size: 26 Copynumber: 2.4 Consensus size: 25
8723681 AACTTTTAAT
* *
8723691 TTTTTATTTTTTTAAATTAGAAAAT
1 TTTTTAATTTTTTAAATTAGAAAAA
8723716 TTTTCTAATTTTTTAAATTAGAAAAAA
1 TTTT-TAATTTTTTAAATTAG-AAAAA
8723743 TTTTTAATT
1 TTTTTAATT
8723752 AGATAAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
25 4 0.12
26 20 0.62
27 8 0.25
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57
Consensus pattern (25 bp):
TTTTTAATTTTTTAAATTAGAAAAA
Found at i:8723758 original size:26 final size:26
Alignment explanation
Indices: 8723703--8723760 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
8723693 TTTATTTTTT
* ***
8723703 TAAATTAGAAAATTTTTCTAATTTTT
1 TAAATTAGAAAAATTTTCTAATTAGA
8723729 TAAATTAGAAAAAATTTT-TAATTAGA
1 TAAATTAG-AAAAATTTTCTAATTAGA
8723755 TAAATT
1 TAAATT
8723761 TAATATCAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 19 0.70
27 8 0.30
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.47
Consensus pattern (26 bp):
TAAATTAGAAAAATTTTCTAATTAGA
Found at i:8724116 original size:16 final size:16
Alignment explanation
Indices: 8724091--8724121 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8724081 AATCTTCTTT
8724091 TTTATCTTTTCTTTTA
1 TTTATCTTTTCTTTTA
*
8724107 TTTATTTTTTCTTTT
1 TTTATCTTTTCTTTT
8724122 CCTCTTTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTATCTTTTCTTTTA
Found at i:8724119 original size:21 final size:25
Alignment explanation
Indices: 8724089--8724142 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
8724079 CTAATCTTCT
8724089 TTTTTATC-TTT-TC-TTTTATTTA
1 TTTTTATCTTTTCTCTTTTTATTTA
8724111 TTTTT-TCTTTTCCTCTTTTTATTTA
1 TTTTTATCTTTT-CTCTTTTTATTTA
8724136 TTTTTAT
1 TTTTTAT
8724143 TAATAAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
21 2 0.07
22 8 0.30
24 2 0.07
25 14 0.52
26 1 0.04
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.78
Consensus pattern (25 bp):
TTTTTATCTTTTCTCTTTTTATTTA
Found at i:8724692 original size:15 final size:17
Alignment explanation
Indices: 8724668--8724702 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
8724658 AAGCTTTTTA
8724668 TTTTCTCTTTTCA-TTT
1 TTTTCTCTTTTCACTTT
8724684 TTTTC-CTTTTCACTTT
1 TTTTCTCTTTTCACTTT
8724700 TTT
1 TTT
8724703 GAATTGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.06, C:0.20, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTCTCTTTTCACTTT
Found at i:8725619 original size:2 final size:2
Alignment explanation
Indices: 8725579--8725604 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8725569 ACCTAAATTC
8725579 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8725605 TAATTTTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8725671 original size:13 final size:15
Alignment explanation
Indices: 8725628--8725678 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 15
8725618 TACGTGACTT
8725628 ATATATAAATTAATTAC
1 ATATATAAA--AATTAC
*
8725645 ATATATATAAATTA-
1 ATATATAAAAATTAC
*
8725659 ATA-ATAAAAATTAT
1 ATATATAAAAATTAC
8725673 ATATAT
1 ATATAT
8725679 TTTATTAAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
13 9 0.30
14 6 0.20
15 7 0.23
17 8 0.27
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (15 bp):
ATATATAAAAATTAC
Found at i:8733010 original size:23 final size:24
Alignment explanation
Indices: 8732967--8733012 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
8732957 CATGCCAAAA
8732967 ATATCATACAATAAATATAAAATC
1 ATATCATACAATAAATATAAAATC
*
8732991 ATATCATGCAAT-AATATAAAAT
1 ATATCATACAATAAATATAAAAT
8733013 ATCACACAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 10 0.48
24 11 0.52
ACGTcount: A:0.57, C:0.11, G:0.02, T:0.30
Consensus pattern (24 bp):
ATATCATACAATAAATATAAAATC
Found at i:8733012 original size:58 final size:54
Alignment explanation
Indices: 8732935--8733139 Score: 182
Period size: 58 Copynumber: 3.6 Consensus size: 54
8732925 CAACCATGCA
* * **
8732935 ATCATGCAATTATAAAAAATATCATGCCAAAAATATCATACAATAAATATAAAATCAT
1 ATCATGCAATAATATAAAATATCATG-CAAAAATATCATGTAATAAATAT--AAT-AT
** *
8732993 ATCATGCAATAATATAAAATATCACACAAAAATTATCATGTAAT-AATGTAATAT
1 ATCATGCAATAATATAAAATATCATGCAAAAA-TATCATGTAATAAATATAATAT
* * *
8733047 ATGATGTAATAATATAAAATATCATGCAATAA-ATCATGTAATAATTATCATGTAATAAT
1 ATCATGCAATAATATAAAATATCATGCAAAAATATCATGTAATAA--AT-A--TAAT-AT
* *
8733106 ATAATGCAATAATAT-AAATATCATGCAATAATAT
1 ATCATGCAATAATATAAAATATCATGCAAAAATAT
8733140 AAAATATCAT
Statistics
Matches: 123, Mismatches: 15, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
52 10 0.08
53 1 0.01
54 29 0.24
55 5 0.04
57 10 0.08
58 51 0.41
59 17 0.14
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.32
Consensus pattern (54 bp):
ATCATGCAATAATATAAAATATCATGCAAAAATATCATGTAATAAATATAATAT
Found at i:8733125 original size:19 final size:19
Alignment explanation
Indices: 8733103--8733142 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
8733093 ATCATGTAAT
8733103 AATATAATGCAATAATATA
1 AATATAATGCAATAATATA
*
8733122 AATATCATGCAATAATATA
1 AATATAATGCAATAATATA
8733141 AA
1 AA
8733143 ATATCATTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.57, C:0.07, G:0.05, T:0.30
Consensus pattern (19 bp):
AATATAATGCAATAATATA
Found at i:8733128 original size:32 final size:31
Alignment explanation
Indices: 8733045--8733141 Score: 96
Period size: 32 Copynumber: 3.2 Consensus size: 31
8733035 ATAATGTAAT
*
8733045 ATATGATGTAATAATATAAAATATCATGCAATA
1 ATATAATG-AATAATAT-AAATATCATGCAATA
* * *
8733078 A-ATCATG--T-A-ATAATTATCATGTAATA
1 ATATAATGAATAATATAAATATCATGCAATA
8733104 ATATAATGCAATAATATAAATATCATGCAATA
1 ATATAATG-AATAATATAAATATCATGCAATA
8733136 ATATAA
1 ATATAA
8733142 AATATCATTA
Statistics
Matches: 52, Mismatches: 6, Indels: 13
0.73 0.08 0.18
Matches are distributed among these distances:
26 14 0.27
27 7 0.13
28 1 0.02
29 1 0.02
30 1 0.02
31 1 0.02
32 26 0.50
33 1 0.02
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.34
Consensus pattern (31 bp):
ATATAATGAATAATATAAATATCATGCAATA
Found at i:8733255 original size:22 final size:22
Alignment explanation
Indices: 8733218--8733281 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 22
8733208 ACCACATAAA
8733218 TAAATATATTAATAATCATGCAAT
1 TAAATA-A-TAATAATCATGCAAT
*
8733242 TAAATAATAATAATCATGTAAT
1 TAAATAATAATAATCATGCAAT
8733264 TAAAT-AT--TAATCATGCAA
1 TAAATAATAATAATCATGCAA
8733282 AACATGCAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
19 10 0.26
21 2 0.05
22 19 0.50
23 1 0.03
24 6 0.16
ACGTcount: A:0.52, C:0.08, G:0.05, T:0.36
Consensus pattern (22 bp):
TAAATAATAATAATCATGCAAT
Found at i:8733292 original size:28 final size:28
Alignment explanation
Indices: 8733256--8733311 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
8733246 TAATAATAAT
* *
8733256 CATGTAATTAAATATTAA-TCATGCAAAA
1 CATGCAATTAAAT-TAAATTCATGCAAAA
8733284 CATGCAATTAAATTAAATTCATGCAAAA
1 CATGCAATTAAATTAAATTCATGCAAAA
8733312 ATTAGTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.12
28 22 0.88
ACGTcount: A:0.50, C:0.12, G:0.07, T:0.30
Consensus pattern (28 bp):
CATGCAATTAAATTAAATTCATGCAAAA
Found at i:8733420 original size:14 final size:14
Alignment explanation
Indices: 8733401--8733441 Score: 66
Period size: 13 Copynumber: 2.9 Consensus size: 14
8733391 ATAAAAATAG
8733401 AAAATAAACAAAAC
1 AAAATAAACAAAAC
8733415 AAAAT-AACAAAAC
1 AAAATAAACAAAAC
8733428 AAAATAAATCAAAA
1 AAAATAAA-CAAAA
8733442 TAAATTAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 13 0.52
14 7 0.28
15 5 0.20
ACGTcount: A:0.78, C:0.12, G:0.00, T:0.10
Consensus pattern (14 bp):
AAAATAAACAAAAC
Found at i:8733945 original size:27 final size:26
Alignment explanation
Indices: 8733914--8733967 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
8733904 TGTAATTGTT
*
8733914 ATTTTTACTTTTTTT-TTTTATTTTGG
1 ATTTTTAATTTTTTTATTTT-TTTTGG
8733940 ATTTTTAATTTTTTTAATTTTTTTTGG
1 ATTTTTAATTTTTTT-ATTTTTTTTGG
8733967 A
1 A
8733968 GTTTGATTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 14 0.56
27 7 0.28
28 4 0.16
ACGTcount: A:0.17, C:0.02, G:0.07, T:0.74
Consensus pattern (26 bp):
ATTTTTAATTTTTTTATTTTTTTTGG
Found at i:8734065 original size:22 final size:22
Alignment explanation
Indices: 8734026--8734071 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
8734016 TTGGGTTTGG
* *
8734026 GTTTACTAGTTTTGAATTGGTT
1 GTTTACTAGTTTTAAATTGCTT
8734048 GTTT-CTAGTTTCTAAATTGCTT
1 GTTTACTAGTTT-TAAATTGCTT
8734070 GT
1 GT
8734072 GTGGCTTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.17, C:0.09, G:0.20, T:0.54
Consensus pattern (22 bp):
GTTTACTAGTTTTAAATTGCTT
Found at i:8734613 original size:6 final size:6
Alignment explanation
Indices: 8734563--8734631 Score: 59
Period size: 6 Copynumber: 11.7 Consensus size: 6
8734553 CTTTTTTGAC
* * * * * * **
8734563 CAAAA- CAAAAT TAAACT AAAAAT TAAAAT TAAAAT TAAAGC CAAAAT
1 CAAAAT CAAAAT CAAAAT CAAAAT CAAAAT CAAAAT CAAAAT CAAAAT
8734610 CAAAAT CAAAAT CAAAAT CAAA
1 CAAAAT CAAAAT CAAAAT CAAA
8734632 CCAAATTAAA
Statistics
Matches: 53, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
5 5 0.09
6 48 0.91
ACGTcount: A:0.67, C:0.13, G:0.01, T:0.19
Consensus pattern (6 bp):
CAAAAT
Found at i:8736517 original size:17 final size:17
Alignment explanation
Indices: 8736491--8736577 Score: 61
Period size: 17 Copynumber: 5.1 Consensus size: 17
8736481 CTTGCAAATT
*
8736491 TTTG-AAATCTTGTGAA
1 TTTGAAAATCTTGTAAA
* *
8736507 TTTGAAAATCTTTTGAA
1 TTTGAAAATCTTGTAAA
* * **
8736524 TCTTTAAATTCTTACAAA
1 T-TTGAAAATCTTGTAAA
8736542 CCTTTG-AAATCTTGTAAA
1 --TTTGAAAATCTTGTAAA
*
8736560 TTTGAAAATCTTGCAAA
1 TTTGAAAATCTTGTAAA
8736577 T
1 T
8736578 CTTTTATATC
Statistics
Matches: 55, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
16 8 0.15
17 24 0.44
18 20 0.36
19 2 0.04
20 1 0.02
ACGTcount: A:0.36, C:0.11, G:0.10, T:0.43
Consensus pattern (17 bp):
TTTGAAAATCTTGTAAA
Found at i:8736536 original size:53 final size:53
Alignment explanation
Indices: 8736451--8736571 Score: 179
Period size: 53 Copynumber: 2.3 Consensus size: 53
8736441 TAATCCTCAC
* * * **
8736451 AAATCTGAAAATGTTATGAATCTTTAAATTCTTGCAAATTTTTGAAATCTTGT
1 AAATTTGAAAATCTTATGAATCTTTAAATTCTTACAAACCTTTGAAATCTTGT
* *
8736504 GAATTTGAAAATCTTTTGAATCTTTAAATTCTTACAAACCTTTGAAATCTTGT
1 AAATTTGAAAATCTTATGAATCTTTAAATTCTTACAAACCTTTGAAATCTTGT
8736557 AAATTTGAAAATCTT
1 AAATTTGAAAATCTT
8736572 GCAAATCTTT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 60 1.00
ACGTcount: A:0.36, C:0.11, G:0.10, T:0.43
Consensus pattern (53 bp):
AAATTTGAAAATCTTATGAATCTTTAAATTCTTACAAACCTTTGAAATCTTGT
Found at i:8736579 original size:53 final size:53
Alignment explanation
Indices: 8736469--8736594 Score: 164
Period size: 53 Copynumber: 2.4 Consensus size: 53
8736459 AAATGTTATG
* ** * ***
8736469 AATCTTTAAATTCTTGCAAATTTTTGAAATCTTGTGAATTTGAAAATCTTTTG
1 AATCTTTAAATTCTTACAAACCTTTGAAATCTTGTAAATTTGAAAATCTTGCA
8736522 AATCTTTAAATTCTTACAAACCTTTGAAATCTTGTAAATTTGAAAATCTTGCA
1 AATCTTTAAATTCTTACAAACCTTTGAAATCTTGTAAATTTGAAAATCTTGCA
*
8736575 AATCTTT-TATATCTTACAAA
1 AATCTTTAAAT-TCTTACAAA
8736595 ATTTTGGGTT
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
52 2 0.03
53 62 0.97
ACGTcount: A:0.36, C:0.13, G:0.08, T:0.44
Consensus pattern (53 bp):
AATCTTTAAATTCTTACAAACCTTTGAAATCTTGTAAATTTGAAAATCTTGCA
Found at i:8738013 original size:21 final size:20
Alignment explanation
Indices: 8737976--8738019 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
8737966 TTGAATGATT
* *
8737976 TTTTAAATTAATAAAAATAA
1 TTTTAAAATAATAAAAAAAA
*
8737996 TTTTAAAATATTAGAAAAAAA
1 TTTTAAAATAATA-AAAAAAA
8738017 TTT
1 TTT
8738020 AATTATCAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (20 bp):
TTTTAAAATAATAAAAAAAA
Found at i:8739443 original size:27 final size:26
Alignment explanation
Indices: 8739412--8739465 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
8739402 TGTAATTGTT
*
8739412 ATTTTTACTTTTTTT-TTTTATTTTGG
1 ATTTTTAATTTTTTTATTTT-TTTTGG
8739438 ATTTTTAATTTTTTTAATTTTTTTTGG
1 ATTTTTAATTTTTTT-ATTTTTTTTGG
8739465 A
1 A
8739466 GTTTGATTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 14 0.56
27 7 0.28
28 4 0.16
ACGTcount: A:0.17, C:0.02, G:0.07, T:0.74
Consensus pattern (26 bp):
ATTTTTAATTTTTTTATTTTTTTTGG
Found at i:8739563 original size:22 final size:22
Alignment explanation
Indices: 8739524--8739569 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
8739514 TTGGGTTTGG
* *
8739524 GTTTACTAGTTTTGAATTGGTT
1 GTTTACTAGTTTTAAATTGCTT
8739546 GTTT-CTAGTTTCTAAATTGCTT
1 GTTTACTAGTTT-TAAATTGCTT
8739568 GT
1 GT
8739570 GTGGCTTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.17, C:0.09, G:0.20, T:0.54
Consensus pattern (22 bp):
GTTTACTAGTTTTAAATTGCTT
Found at i:8740105 original size:6 final size:6
Alignment explanation
Indices: 8740096--8740123 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
8740086 AAATTAAAGC
8740096 CAAAAT CAAAAT CAAAAT CAAAAT CAAA
1 CAAAAT CAAAAT CAAAAT CAAAAT CAAA
8740124 CCAAATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.68, C:0.18, G:0.00, T:0.14
Consensus pattern (6 bp):
CAAAAT
Found at i:8742000 original size:18 final size:18
Alignment explanation
Indices: 8741979--8742046 Score: 52
Period size: 18 Copynumber: 3.8 Consensus size: 18
8741969 AATTCTTGCA
8741979 AATTTTTGAAATCTTACG
1 AATTTTTGAAATCTTACG
**
8741997 AA--TTTGAAAATCTTGTG
1 AATTTTTG-AAATCTTACG
*
8742014 AATTTTT-AAATTCTTACA
1 AATTTTTGAAA-TCTTACG
**
8742032 AACCTTTGAAATCTT
1 AATTTTTGAAATCTT
8742047 GCAAATCTGA
Statistics
Matches: 38, Mismatches: 7, Indels: 10
0.69 0.13 0.18
Matches are distributed among these distances:
16 4 0.11
17 13 0.34
18 15 0.39
19 6 0.16
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (18 bp):
AATTTTTGAAATCTTACG
Found at i:8742024 original size:17 final size:17
Alignment explanation
Indices: 8741960--8742024 Score: 58
Period size: 17 Copynumber: 3.7 Consensus size: 17
8741950 AAAATGTTGT
*
8741960 GAATCTTTAAATTCTTGC
1 GAATTTTTAAA-TCTTGC
* *
8741978 AAATTTTTGAAATCTTAC
1 GAATTTTT-AAATCTTGC
** *
8741996 GAATTTGAAAATCTTGT
1 GAATTTTTAAATCTTGC
8742013 GAATTTTTAAAT
1 GAATTTTTAAAT
8742025 TCTTACAAAC
Statistics
Matches: 36, Mismatches: 10, Indels: 3
0.73 0.20 0.06
Matches are distributed among these distances:
17 17 0.47
18 16 0.44
19 3 0.08
ACGTcount: A:0.35, C:0.09, G:0.11, T:0.45
Consensus pattern (17 bp):
GAATTTTTAAATCTTGC
Found at i:8742028 original size:53 final size:53
Alignment explanation
Indices: 8741941--8742073 Score: 176
Period size: 53 Copynumber: 2.5 Consensus size: 53
8741931 TTTAATCCTC
* * **
8741941 ACAAATCTGAAAATGTTGTGAATCTTTAAATTCTTGCAAATTTTTGAAATCTT
1 ACAAATCTGAAAATCTTGTGAATCTTTAAATTCTTACAAACCTTTGAAATCTT
* * *
8741994 ACGAATTTGAAAATCTTGTGAATTTTTAAATTCTTACAAACCTTTGAAATCTT
1 ACAAATCTGAAAATCTTGTGAATCTTTAAATTCTTACAAACCTTTGAAATCTT
* **
8742047 GCAAATCTGAAAATCTTGCAAATCTTT
1 ACAAATCTGAAAATCTTGTGAATCTTT
8742074 TATATGTTAC
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
53 67 1.00
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.40
Consensus pattern (53 bp):
ACAAATCTGAAAATCTTGTGAATCTTTAAATTCTTACAAACCTTTGAAATCTT
Found at i:8742054 original size:9 final size:9
Alignment explanation
Indices: 8742040--8742072 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
8742030 CAAACCTTTG
8742040 AAATCTTGC
1 AAATCTTGC
*
8742049 AAATC-TGA
1 AAATCTTGC
8742057 AAATCTTGC
1 AAATCTTGC
8742066 AAATCTT
1 AAATCTT
8742073 TTATATGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
8 7 0.33
9 14 0.67
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.33
Consensus pattern (9 bp):
AAATCTTGC
Found at i:8743502 original size:21 final size:20
Alignment explanation
Indices: 8743465--8743508 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
8743455 TTGAATGATT
* *
8743465 TTTTAAATTAATAAAAATAA
1 TTTTAAAATAATAAAAAAAA
*
8743485 TTTTAAAATATTAGAAAAAAA
1 TTTTAAAATAATA-AAAAAAA
8743506 TTT
1 TTT
8743509 AATTATTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (20 bp):
TTTTAAAATAATAAAAAAAA
Found at i:8745331 original size:32 final size:32
Alignment explanation
Indices: 8745290--8745353 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
8745280 AATACTTTTC
* *
8745290 AGTGAGATTATATCTACTATGTTCAACTATTT
1 AGTGAGATTATATCTACTACGATCAACTATTT
* *
8745322 AGTGAGATTATATTTATTACGATCAACTATTT
1 AGTGAGATTATATCTACTACGATCAACTATTT
8745354 TTTCAAGCAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.33, C:0.11, G:0.12, T:0.44
Consensus pattern (32 bp):
AGTGAGATTATATCTACTACGATCAACTATTT
Found at i:8746823 original size:189 final size:187
Alignment explanation
Indices: 8746573--8746946 Score: 442
Period size: 189 Copynumber: 2.0 Consensus size: 187
8746563 CAATCAATTA
* *
8746573 CTGCATTGATTTGTTTCAAAACGCAGTAATTGATACTTGTATTTATTTCATACAATCAATTACAA
1 CTGCATTGATTTGTTTCAAAACGCAGTAATTGATACTTGTATTTATTTCAGAAAATCAATTACAA
** * * ** * * * *
8746638 TGTTGCTATGTTGTATAATGCAGCATTTGATAATTTTAACTATTTTGAAACATCCAATTACTATG
66 CATTGCAATGTTGTAAAACACAACATTTGATAATTATAACTATTTTGAAACATCCAATTACCACG
* * *
8746703 TTGAATTGGTCATAAACACAGTAATTAATAATTTTATTCTTTTTTCAAATAATCAAACG
131 TTGAATTGGTCAAAAACACAGTAATTAAGAATTTTA-T-TTTTTTCAAACAATCAAACG
* * * * * * *
8746762 CTGCATTGATTTGTTTCATAATGTAGTAATTGATACTTTTATTTGTTTTAGAAAATCAATTACTA
1 CTGCATTGATTTGTTTCAAAACGCAGTAATTGATACTTGTATTTATTTCAGAAAATCAATTACAA
* * * ** *
8746827 CATTGCAATGTTGTAAAACACAATATTTGATAATTATAATTGTTTTGAAACATTTAATTACCGCG
66 CATTGCAATGTTGTAAAACACAACATTTGATAATTATAACTATTTTGAAACATCCAATTACCACG
* * **
8746892 TTGCATTGGTTAAAAACGTAGTAATTAAGAATTTTATTTTTTTCAAACAATCAAA
131 TTGAATTGGTCAAAAACACAGTAATTAAGAATTTTATTTTTTTCAAACAATCAAA
8746947 TATTGTGTTG
Statistics
Matches: 153, Mismatches: 32, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
187 17 0.11
188 1 0.01
189 135 0.88
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.42
Consensus pattern (187 bp):
CTGCATTGATTTGTTTCAAAACGCAGTAATTGATACTTGTATTTATTTCAGAAAATCAATTACAA
CATTGCAATGTTGTAAAACACAACATTTGATAATTATAACTATTTTGAAACATCCAATTACCACG
TTGAATTGGTCAAAAACACAGTAATTAAGAATTTTATTTTTTTCAAACAATCAAACG
Found at i:8747830 original size:9 final size:9
Alignment explanation
Indices: 8747799--8747857 Score: 54
Period size: 9 Copynumber: 6.8 Consensus size: 9
8747789 TATAAAAGGA
8747799 AAAAAATC-
1 AAAAAATCT
8747807 ACAAAAATC-
1 A-AAAAATCT
*
8747816 ATAAAAATTT
1 A-AAAAATCT
8747826 AAAAAATCT
1 AAAAAATCT
*
8747835 -AAAAA-GT
1 AAAAAATCT
8747842 AAAAAATCT
1 AAAAAATCT
8747851 AAAAAAT
1 AAAAAAT
8747858 AAAAAAAATA
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
7 1 0.02
8 11 0.26
9 29 0.69
10 1 0.02
ACGTcount: A:0.69, C:0.08, G:0.02, T:0.20
Consensus pattern (9 bp):
AAAAAATCT
Found at i:8747831 original size:43 final size:43
Alignment explanation
Indices: 8747783--8747866 Score: 107
Period size: 43 Copynumber: 2.0 Consensus size: 43
8747773 CTAAAACAAA
* * *
8747783 AAAAAATATAAAAGGAAAAAAATC-ACAAAAATCATAAAAATTT
1 AAAAAATATAAAAAGAAAAAAATCTA-AAAAATAAAAAAAATTT
* *
8747826 AAAAAATCTAAAAAGTAAAAAATCTAAAAAATAAAAAAAAT
1 AAAAAATATAAAAAGAAAAAAATCTAAAAAATAAAAAAAAT
8747867 AAGAAAATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 34 0.97
44 1 0.03
ACGTcount: A:0.73, C:0.06, G:0.04, T:0.18
Consensus pattern (43 bp):
AAAAAATATAAAAAGAAAAAAATCTAAAAAATAAAAAAAATTT
Found at i:8747838 original size:16 final size:16
Alignment explanation
Indices: 8747809--8747863 Score: 74
Period size: 16 Copynumber: 3.3 Consensus size: 16
8747799 AAAAAATCAC
*
8747809 AAAAATCATAAAAATTTA
1 AAAAATC-TAAAAA-GTA
8747827 AAAAATCTAAAAAGTA
1 AAAAATCTAAAAAGTA
*
8747843 AAAAATCTAAAAAATA
1 AAAAATCTAAAAAGTA
8747859 AAAAA
1 AAAAA
8747864 AATAAGAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
16 22 0.63
17 6 0.17
18 7 0.20
ACGTcount: A:0.73, C:0.05, G:0.02, T:0.20
Consensus pattern (16 bp):
AAAAATCTAAAAAGTA
Found at i:8747846 original size:25 final size:25
Alignment explanation
Indices: 8747768--8747876 Score: 76
Period size: 25 Copynumber: 4.3 Consensus size: 25
8747758 TTGAAAAGAG
* * *
8747768 AAAATCTAAAACA-AAAAAAAATAT
1 AAAATTTAAAAAATAAAAAAAATAA
*** * *
8747792 AAAAGGAAAAAAATCACAAAAATCATA
1 AAAATTTAAAAAATAAAAAAAAT-A-A
** *
8747819 AAAATTTAAAAAATCTAAAAAGTAA
1 AAAATTTAAAAAATAAAAAAAATAA
*
8747844 AAAATCTAAAAAATAAAAAAAATAA
1 AAAATTTAAAAAATAAAAAAAATAA
8747869 GAAAATTT
1 -AAAATTT
8747877 TGACATATTA
Statistics
Matches: 63, Mismatches: 18, Indels: 6
0.72 0.21 0.07
Matches are distributed among these distances:
24 9 0.14
25 29 0.46
26 8 0.13
27 17 0.27
ACGTcount: A:0.72, C:0.06, G:0.04, T:0.18
Consensus pattern (25 bp):
AAAATTTAAAAAATAAAAAAAATAA
Found at i:8748459 original size:22 final size:22
Alignment explanation
Indices: 8748433--8748483 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
8748423 ATTTTTCATA
*
8748433 TTTTAAAATAT-TGACTTTAATT
1 TTTTAAAATATATG-CTTTAAGT
* *
8748455 TTTTAAATTATATGCTTTGAGT
1 TTTTAAAATATATGCTTTAAGT
8748477 TTTTAAA
1 TTTTAAA
8748484 CTTTATATGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 23 0.92
23 2 0.08
ACGTcount: A:0.33, C:0.04, G:0.08, T:0.55
Consensus pattern (22 bp):
TTTTAAAATATATGCTTTAAGT
Found at i:8748661 original size:15 final size:16
Alignment explanation
Indices: 8748593--8748650 Score: 57
Period size: 16 Copynumber: 3.4 Consensus size: 16
8748583 AATTTCTAGA
8748593 TTTTTAAAATATATA-
1 TTTTTAAAATATATAT
8748608 -TTTTAAAATTTTATCAATAT
1 TTTTTAAAA---TAT--ATAT
8748628 TTTTTAAAATATATAT
1 TTTTTAAAATATATAT
8748644 TTTTTAA
1 TTTTTAA
8748651 CTTTATATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 13
0.73 0.00 0.27
Matches are distributed among these distances:
14 8 0.22
16 11 0.31
17 3 0.08
18 3 0.08
19 3 0.08
21 8 0.22
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (16 bp):
TTTTTAAAATATATAT
Found at i:8749505 original size:27 final size:27
Alignment explanation
Indices: 8749475--8749543 Score: 120
Period size: 27 Copynumber: 2.6 Consensus size: 27
8749465 GTACAAATGA
* *
8749475 TTGATTAAATATATTTTTTGCTAAGTT
1 TTGATTAAATATATTTTTTGCCAAGCT
8749502 TTGATTAAATATATTTTTTGCCAAGCT
1 TTGATTAAATATATTTTTTGCCAAGCT
8749529 TTGATTAAATATATT
1 TTGATTAAATATATT
8749544 GAAAATATAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.32, C:0.06, G:0.10, T:0.52
Consensus pattern (27 bp):
TTGATTAAATATATTTTTTGCCAAGCT
Found at i:8755172 original size:21 final size:21
Alignment explanation
Indices: 8755143--8755194 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
8755133 CAAAGCTATG
*
8755143 AGTCATTGCTGTTGATCATTCA
1 AGTCATTGCTCTTGATCA-TCA
*
8755165 AG-CATTGCTCTTGGTCATCA
1 AGTCATTGCTCTTGATCATCA
8755185 AGTCATTGCT
1 AGTCATTGCT
8755195 ATTGTTGCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 5 0.19
21 20 0.74
22 2 0.07
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.38
Consensus pattern (21 bp):
AGTCATTGCTCTTGATCATCA
Found at i:8761703 original size:16 final size:16
Alignment explanation
Indices: 8761682--8761712 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8761672 TTTTGTGCTT
8761682 ATGATTTATTTATGAC
1 ATGATTTATTTATGAC
*
8761698 ATGATTTGTTTATGA
1 ATGATTTATTTATGA
8761713 TATTTTGATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.03, G:0.16, T:0.52
Consensus pattern (16 bp):
ATGATTTATTTATGAC
Found at i:8766450 original size:40 final size:40
Alignment explanation
Indices: 8766405--8766532 Score: 166
Period size: 40 Copynumber: 3.2 Consensus size: 40
8766395 AACATTTGTG
* * * *
8766405 TTTGCATCACTTGCATCTATATCAAAAAGAGGCATTCACA
1 TTTGCATCATTTGCATCTACATCAAAAAAAGACATTCACA
* *
8766445 TTTGCATCATTTGCATCTACATAAAAAAAAGATATTCACA
1 TTTGCATCATTTGCATCTACATCAAAAAAAGACATTCACA
* **
8766485 TTTGCATCATTTGCATCTACATCACAAGAAAGACATTTGCA
1 TTTGCATCATTTGCATCTACATCA-AAAAAAGACATTCACA
8766526 TTTGCAT
1 TTTGCAT
8766533 TACTGGCATT
Statistics
Matches: 76, Mismatches: 11, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
40 57 0.75
41 19 0.25
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.33
Consensus pattern (40 bp):
TTTGCATCATTTGCATCTACATCAAAAAAAGACATTCACA
Found at i:8767287 original size:80 final size:80
Alignment explanation
Indices: 8767066--8767421 Score: 416
Period size: 80 Copynumber: 4.5 Consensus size: 80
8767056 CTTAAGACCT
* * * *
8767066 TTAAGACCTCTGGGCATAATCTTTAAGACCTCTAGGCAAAACTTTTTAAGTTTTTAAAAATTTAG
1 TTAAGACCTCAGGGCACAATCTTTAAGACCTCTAGGCAAAACTTTTTAAGTTTTTAAAAATTCAA
*
8767131 AGAATTTTGAAATCC
66 AGATTTTTGAAATCC
* * * * *
8767146 TCAAAACCTTC-GGGCACAATC--T-AGATCTTTAGGGCAAAAATTTTTAAGTTTTTAAAAATTC
1 TTAAGACC-TCAGGGCACAATCTTTAAGACCTCTA-GGCAAAACTTTTTAAGTTTTTAAAAATTC
* *
8767207 AAACATTTTTTAAATCC
64 AAAGATTTTTGAAATCC
* * * * *
8767224 TTAAGACCTCAAGACACAATCTTTAAAACCTCCAGGCAAAACTTTTTAAGTTTTTAAAGATTCAA
1 TTAAGACCTCAGGGCACAATCTTTAAGACCTCTAGGCAAAACTTTTTAAGTTTTTAAAAATTCAA
8767289 AGATTTTTGAAATCC
66 AGATTTTTGAAATCC
* * * *
8767304 TTAAGACCTCAGGGCATAATCTTTAAGACCTCAAGGCAAAACTTTTTAAGATTTTAAAGATTCAA
1 TTAAGACCTCAGGGCACAATCTTTAAGACCTCTAGGCAAAACTTTTTAAGTTTTTAAAAATTCAA
**
8767369 AGATTTTTGAAATAT
66 AGATTTTTGAAATCC
* * *
8767384 TTAAGACCTCTA-TGCACAATTTTTAAAACCTCTAGGCA
1 TTAAGACCTC-AGGGCACAATCTTTAAGACCTCTAGGCA
8767422 TAATTTTAAG
Statistics
Matches: 233, Mismatches: 36, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
77 9 0.04
78 55 0.24
80 161 0.69
81 8 0.03
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (80 bp):
TTAAGACCTCAGGGCACAATCTTTAAGACCTCTAGGCAAAACTTTTTAAGTTTTTAAAAATTCAA
AGATTTTTGAAATCC
Found at i:8767297 original size:158 final size:159
Alignment explanation
Indices: 8767066--8767421 Score: 432
Period size: 158 Copynumber: 2.2 Consensus size: 159
8767056 CTTAAGACCT
** * * * *
8767066 TTAAGACCTCTGGGCATAATCTTTAAGACCTCTAGGCAAAACTTTTTAAGTTTTTAAAAATTTAG
1 TTAAGACCTCTAAGCACAATCTTTAAAACCTCTAGGCAAAACTTTTTAAGTTTTTAAAAATTCAA
* * *
8767131 AGAATTTTGAAATCCTCAAAACCTTC-GGGCACAATC-T-AGATCTTTAGGGCAAAAATTTTTAA
66 AGAATTTTGAAATCCTCAAAACC-TCAGGGCACAATCTTAAGA-CCTCAAGGCAAAAATTTTTAA
* * *
8767193 GTTTTTAAAAATTCAAACATTTTTTAAATCC
129 GATTTTAAAAATTCAAACATTTTTGAAATAC
* *
8767224 TTAAGACCTC-AAGACACAATCTTTAAAACCTCCAGGCAAAACTTTTTAAGTTTTTAAAGATTCA
1 TTAAGACCTCTAAG-CACAATCTTTAAAACCTCTAGGCAAAACTTTTTAAGTTTTTAAAAATTCA
* * * * *
8767288 AAGATTTTTGAAATCCTTAAGACCTCAGGGCATAATCTTTAAGACCTCAAGGCAAAACTTTTTAA
65 AAGAATTTTGAAATCCTCAAAACCTCAGGGCACAATC-TTAAGACCTCAAGGCAAAAATTTTTAA
* * *
8767353 GATTTTAAAGATTCAAAGATTTTTGAAATAT
129 GATTTTAAAAATTCAAACATTTTTGAAATAC
* *
8767384 TTAAGACCTCTATGCACAATTTTTAAAACCTCTAGGCA
1 TTAAGACCTCTAAGCACAATCTTTAAAACCTCTAGGCA
8767422 TAATTTTAAG
Statistics
Matches: 167, Mismatches: 25, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
157 3 0.02
158 84 0.50
160 75 0.45
161 5 0.03
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (159 bp):
TTAAGACCTCTAAGCACAATCTTTAAAACCTCTAGGCAAAACTTTTTAAGTTTTTAAAAATTCAA
AGAATTTTGAAATCCTCAAAACCTCAGGGCACAATCTTAAGACCTCAAGGCAAAAATTTTTAAGA
TTTTAAAAATTCAAACATTTTTGAAATAC
Found at i:8767329 original size:22 final size:22
Alignment explanation
Indices: 8767299--8767341 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
8767289 AGATTTTTGA
*
8767299 AATCCTTAAGACCTCAGGGCAT
1 AATCCTTAAGACCTCAAGGCAT
*
8767321 AATCTTTAAGACCTCAAGGCA
1 AATCCTTAAGACCTCAAGGCA
8767342 AAACTTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (22 bp):
AATCCTTAAGACCTCAAGGCAT
Found at i:8767408 original size:22 final size:22
Alignment explanation
Indices: 8767383--8767508 Score: 103
Period size: 22 Copynumber: 5.8 Consensus size: 22
8767373 TTTTGAAATA
*
8767383 TTTAAGACCTCTATGCACAATT
1 TTTAAGACCTCTAGGCACAATT
* *
8767405 TTTAAAACCTCTAGGCATAA-T
1 TTTAAGACCTCTAGGCACAATT
* * *
8767426 TTTAAGCCCTCAAGGCACAGTT
1 TTTAAGACCTCTAGGCACAATT
* * *
8767448 TTTAAGACCTCTAAGCATAATC
1 TTTAAGACCTCTAGGCACAATT
* * *
8767470 TTTAAGATCTC-AGGGTATAATT
1 TTTAAGACCTCTA-GGCACAATT
* *
8767492 TCTAAGTCCTCTAGGCA
1 TTTAAGACCTCTAGGCA
8767509 AGATTCATAA
Statistics
Matches: 79, Mismatches: 22, Indels: 6
0.74 0.21 0.06
Matches are distributed among these distances:
21 17 0.22
22 61 0.77
23 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.33
Consensus pattern (22 bp):
TTTAAGACCTCTAGGCACAATT
Found at i:8767444 original size:43 final size:44
Alignment explanation
Indices: 8767383--8767481 Score: 128
Period size: 43 Copynumber: 2.3 Consensus size: 44
8767373 TTTTGAAATA
* * *
8767383 TTTAAGACCTCTATGCACAATTTTTAAAACCTCTAGGCATAAT-
1 TTTAAGACCTCAAGGCACAATTTTTAAAACCTCTAAGCATAATC
* * *
8767426 TTTAAGCCCTCAAGGCACAGTTTTTAAGACCTCTAAGCATAATC
1 TTTAAGACCTCAAGGCACAATTTTTAAAACCTCTAAGCATAATC
*
8767470 TTTAAGATCTCA
1 TTTAAGACCTCA
8767482 GGGTATAATT
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
43 37 0.79
44 10 0.21
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.33
Consensus pattern (44 bp):
TTTAAGACCTCAAGGCACAATTTTTAAAACCTCTAAGCATAATC
Found at i:8767490 original size:65 final size:66
Alignment explanation
Indices: 8767383--8767508 Score: 157
Period size: 65 Copynumber: 1.9 Consensus size: 66
8767373 TTTTGAAATA
* *
8767383 TTTAAGACCTCTATGCACAATTTTTAAAACCTCTAGGCATAATTT-TAAGCCCTCAAGGCACAGT
1 TTTAAGACCTCTAAGCACAATCTTTAAAACCTCTAGGCATAATTTCTAAGCCCTCAAGGCACAGT
8767447 T
66 T
* * * * * *
8767448 TTTAAGACCTCTAAGCATAATCTTTAAGATCTC-AGGGTATAATTTCTAAGTCCTCTAGGCA
1 TTTAAGACCTCTAAGCACAATCTTTAAAACCTCTA-GGCATAATTTCTAAGCCCTCAAGGCA
8767509 AGATTCATAA
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
64 1 0.02
65 37 0.73
66 13 0.25
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.33
Consensus pattern (66 bp):
TTTAAGACCTCTAAGCACAATCTTTAAAACCTCTAGGCATAATTTCTAAGCCCTCAAGGCACAGT
T
Found at i:8767742 original size:94 final size:97
Alignment explanation
Indices: 8767644--8767860 Score: 260
Period size: 94 Copynumber: 2.2 Consensus size: 97
8767634 ACAAAAAAAT
*
8767644 AAAACATTTGCATTTGCATCATTTGCATCTACATCAC-AAAAA-AAAGACATTCACATTTGCATC
1 AAAACATTTACATTTGCATCATTTGCATCTACATCACAAAAAAGAAAGACATTCACATTTGCATC
*
8767707 ACTTGCATTCGCACTT-ACGTGCATCATGAGA
66 ACTTGCATTCGCACTTCACGTGCATCATAAGA
* * **
8767738 AAAACATTTACATTTGCATCATTTGCGTCTATATCACAAAAAAAAAGAAAGACATTCGTATTTGC
1 AAAACATTTACATTTGCATCATTTGCATCTACATCAC---AAAAAAGAAAGACATTCACATTTGC
* * * *
8767803 ATCACTTGTATTTGTACTTGCATGTGCATCATAAGA
63 ATCACTTGCATTCGCACTT-CACGTGCATCATAAGA
* **
8767839 AAGACATTTTTATTTGCATCAT
1 AAAACATTTACATTTGCATCAT
8767861 GGCATCTGCA
Statistics
Matches: 103, Mismatches: 13, Indels: 7
0.84 0.11 0.06
Matches are distributed among these distances:
94 34 0.33
98 5 0.05
99 32 0.31
101 32 0.31
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.33
Consensus pattern (97 bp):
AAAACATTTACATTTGCATCATTTGCATCTACATCACAAAAAAGAAAGACATTCACATTTGCATC
ACTTGCATTCGCACTTCACGTGCATCATAAGA
Found at i:8768083 original size:12 final size:12
Alignment explanation
Indices: 8768062--8768108 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 12
8768052 TGTAAATATT
*
8768062 AGAAAGAAGAAA
1 AGAAAAAAGAAA
8768074 AGAAAAAAGAAA
1 AGAAAAAAGAAA
*
8768086 AGAGAAAA-AAA
1 AGAAAAAAGAAA
*
8768097 AG-ATAAAGAAA
1 AGAAAAAAGAAA
8768108 A
1 A
8768109 AATTTGAAGG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
10 3 0.10
11 9 0.30
12 18 0.60
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (12 bp):
AGAAAAAAGAAA
Found at i:8768093 original size:14 final size:15
Alignment explanation
Indices: 8768064--8768110 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
8768054 TAAATATTAG
8768064 AAAGAAGAAAAGAAA
1 AAAGAAGAAAAGAAA
*
8768079 AAAGAA-AAGAGAAA
1 AAAGAAGAAAAGAAA
8768093 AAA-AAGATAAAGAAA
1 AAAGAAGA-AAAGAAA
8768108 AAA
1 AAA
8768111 TTTGAAGGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 2 0.07
14 11 0.39
15 15 0.54
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (15 bp):
AAAGAAGAAAAGAAA
Found at i:8768097 original size:16 final size:16
Alignment explanation
Indices: 8768076--8768110 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
8768066 AGAAGAAAAG
8768076 AAAAAAGA-AAAGAGAA
1 AAAAAAGATAAAGA-AA
8768092 AAAAAAGATAAAGAAA
1 AAAAAAGATAAAGAAA
8768108 AAA
1 AAA
8768111 TTTGAAGGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (16 bp):
AAAAAAGATAAAGAAA
Found at i:8768454 original size:44 final size:44
Alignment explanation
Indices: 8768381--8768492 Score: 163
Period size: 44 Copynumber: 2.5 Consensus size: 44
8768371 ATTTTATGAT
* * * *
8768381 AAGTTGTTATGCCTCTGTTAAGAGGAGTTTTATTTA-CTTATCAA
1 AAGTTGTTGTGCCTCTATTTAGAGAAGTTTTATTTACCTT-TCAA
*
8768425 AAGTTGTTGTGGCTCTATTTAGAGAAGTTTTATTTACCTTTCAA
1 AAGTTGTTGTGCCTCTATTTAGAGAAGTTTTATTTACCTTTCAA
8768469 AAGTTGTTGTGCCTCTATTTAGAG
1 AAGTTGTTGTGCCTCTATTTAGAG
8768493 CCTTTGCTTA
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 58 0.95
45 3 0.05
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.44
Consensus pattern (44 bp):
AAGTTGTTGTGCCTCTATTTAGAGAAGTTTTATTTACCTTTCAA
Found at i:8768572 original size:44 final size:44
Alignment explanation
Indices: 8768504--8768645 Score: 178
Period size: 44 Copynumber: 3.2 Consensus size: 44
8768494 CTTTGCTTAG
*
8768504 AGGAGTTTTATTTACTTTTT-AAAAGTTGCCATGCCTCTGTTTAA
1 AGGAGTTTTATTTA-TTTTTCAAAAGTTGCCATGCCTCTATTTAA
* *
8768548 AGGAGTTTTATTTATTTTTCAAAAGTTGTCGTGCCTCTATTTAA
1 AGGAGTTTTATTTATTTTTCAAAAGTTGCCATGCCTCTATTTAA
* * ** **
8768592 AGGATTTTTATTTACTTTTCAAAAGTTGTTAAACCTCTATTTAA
1 AGGAGTTTTATTTATTTTTCAAAAGTTGCCATGCCTCTATTTAA
*
8768636 AGGAGCTTTA
1 AGGAGTTTTA
8768646 AGAAGTTTGA
Statistics
Matches: 86, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
43 5 0.06
44 81 0.94
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.46
Consensus pattern (44 bp):
AGGAGTTTTATTTATTTTTCAAAAGTTGCCATGCCTCTATTTAA
Found at i:8768576 original size:101 final size:101
Alignment explanation
Indices: 8768401--8768590 Score: 272
Period size: 101 Copynumber: 1.9 Consensus size: 101
8768391 GCCTCTGTTA
*** * *
8768401 AGAGGAGTTTTATTTACTTATCAAAAGTTGTTGTGGCTCTATTTAGAGAAGTTTTATTTACCTTT
1 AGAGGAGTTTTATTTACTTATCAAAAGTTGCCATGCCTCTATTTAAAGAAGTTTTATTTACCTTT
*
8768466 CAAAAGTTGTTGTGCCTCTATTTAGAGCCTTTGCTT
66 CAAAAGTTGTCGTGCCTCTATTTAGAGCCTTTGCTT
* * * * **
8768502 AGAGGAGTTTTATTTACTTTTTAAAAGTTGCCATGCCTCTGTTTAAAGGAGTTTTATTTATTTTT
1 AGAGGAGTTTTATTTACTTATCAAAAGTTGCCATGCCTCTATTTAAAGAAGTTTTATTTACCTTT
8768567 CAAAAGTTGTCGTGCCTCTATTTA
66 CAAAAGTTGTCGTGCCTCTATTTA
8768591 AAGGATTTTT
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
101 77 1.00
ACGTcount: A:0.24, C:0.13, G:0.18, T:0.45
Consensus pattern (101 bp):
AGAGGAGTTTTATTTACTTATCAAAAGTTGCCATGCCTCTATTTAAAGAAGTTTTATTTACCTTT
CAAAAGTTGTCGTGCCTCTATTTAGAGCCTTTGCTT
Found at i:8772164 original size:68 final size:68
Alignment explanation
Indices: 8772017--8772143 Score: 209
Period size: 68 Copynumber: 1.9 Consensus size: 68
8772007 GCATTACACT
* * *
8772017 AATGAATAGGATGTTTATAAAATTATTTTTGCTGGTATATAAATGGATGATTACCTTCTATATAT
1 AATGAATAAGATGTTTATAAAATTATTTCTACTGGTATATAAATGGATGATTACCTTCTATATAT
8772082 ATA
66 ATA
* *
8772085 AATGAATAAGATGTTTATAAAATTATTTCTACTGGTATATGATTGGATGATTACCTTCT
1 AATGAATAAGATGTTTATAAAATTATTTCTACTGGTATATAAATGGATGATTACCTTCT
8772144 TATCTTCTGT
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
68 54 1.00
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.43
Consensus pattern (68 bp):
AATGAATAAGATGTTTATAAAATTATTTCTACTGGTATATAAATGGATGATTACCTTCTATATAT
ATA
Found at i:8772689 original size:15 final size:15
Alignment explanation
Indices: 8772669--8772704 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
8772659 GGTGTAACTC
*
8772669 TTTATCTATGTTTGT
1 TTTATCGATGTTTGT
8772684 TTTATCGATGTTTGT
1 TTTATCGATGTTTGT
8772699 TTTATC
1 TTTATC
8772705 ATACTTGGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.14, C:0.08, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTATCGATGTTTGT
Found at i:8772814 original size:17 final size:18
Alignment explanation
Indices: 8772792--8772829 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
8772782 TTATTAAATA
8772792 TTTTTTACTTTATTG-TG
1 TTTTTTACTTTATTGTTG
* *
8772809 TTTTTTTCTTTTTTGTTG
1 TTTTTTACTTTATTGTTG
8772827 TTT
1 TTT
8772830 ATATGAAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.05, C:0.05, G:0.11, T:0.79
Consensus pattern (18 bp):
TTTTTTACTTTATTGTTG
Found at i:8772885 original size:24 final size:24
Alignment explanation
Indices: 8772845--8772891 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
8772835 AAAACATATC
* *
8772845 ATATTATGATTATAAATA-AATTA
1 ATATTATAATTAAAAATATAATTA
8772868 ATATTAATAATTAAAAATATAATT
1 ATATT-ATAATTAAAAATATAATT
8772892 TTTAAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 11 0.55
25 4 0.20
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (24 bp):
ATATTATAATTAAAAATATAATTA
Found at i:8773250 original size:56 final size:56
Alignment explanation
Indices: 8772982--8773315 Score: 162
Period size: 55 Copynumber: 6.1 Consensus size: 56
8772972 TAAAATATAA
* * * * *
8772982 TAAAAAAATTAAAACATATAAATCTATATTGACA-AT-CTCAAACCATC-GATAAAAG-
1 TAAAAAAATTAAAATATATAAGTCTATACTGACAGATGCT--AACCGTCAG-TATAAGT
* * * * * * * * * *
8773037 TAAGAAAATTAAAGTACATAATTCTATATTGATA-ATCTCTAGCCATCAGTAT-AGG
1 TAAAAAAATTAAAATATATAAGTCTATACTGACAGAT-GCTAACCGTCAGTATAAGT
* * * * ** *
8773092 TAAAAAAATTAAAAAATATAAATCTATACTGACGGATGCTAAACGTTGGTAT-AGG
1 TAAAAAAATTAAAATATATAAGTCTATACTGACAGATGCTAACCGTCAGTATAAGT
* * * **
8773147 T---AAGA--AAAAT-TACAAGTCTATACTGACAGATGTTAATTGTC-GATATAAGT
1 TAAAAAAATTAAAATATATAAGTCTATACTGACAGATGCTAACCGTCAG-TATAAGT
8773197 TAAAAAAATTAAAATATATAAGTCTATACTGACATG-TGCTAACCGTCAGTATAAG-
1 TAAAAAAATTAAAATATATAAGTCTATACTGACA-GATGCTAACCGTCAGTATAAGT
* * * * * * * *
8773252 TGAGAAAATTAAAACATATAAATCTATACTGACGGGCT-CTAAGCGTCAATATAAGT
1 TAAAAAAATTAAAATATATAAGTCTATACTGAC-AGATGCTAACCGTCAGTATAAGT
*
8773308 AAAAAAAA
1 TAAAAAAA
8773316 ATTACAAGTT
Statistics
Matches: 214, Mismatches: 47, Indels: 35
0.72 0.16 0.12
Matches are distributed among these distances:
48 1 0.00
49 27 0.13
50 7 0.03
52 3 0.01
53 3 0.01
54 2 0.01
55 127 0.59
56 40 0.19
57 4 0.02
ACGTcount: A:0.47, C:0.12, G:0.13, T:0.28
Consensus pattern (56 bp):
TAAAAAAATTAAAATATATAAGTCTATACTGACAGATGCTAACCGTCAGTATAAGT
Found at i:8774501 original size:20 final size:19
Alignment explanation
Indices: 8774467--8774516 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
8774457 AGTTCGTGAG
8774467 TTTAATTAAATTTTTATGT
1 TTTAATTAAATTTTTATGT
* *
8774486 TTTAATATATATTTTTATTAT
1 TTTAAT-TAAATTTTTA-TGT
8774507 TTTAATTAAA
1 TTTAATTAAA
8774517 AAATTATTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 6 0.23
20 12 0.46
21 8 0.31
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (19 bp):
TTTAATTAAATTTTTATGT
Found at i:8782215 original size:2 final size:2
Alignment explanation
Indices: 8782208--8782241 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
8782198 CTGCATCAAA
* *
8782208 CT CT CT CT CT TT CT CT CT CT CT TT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8782242 GACTAGAGGA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (2 bp):
CT
Found at i:8782225 original size:12 final size:12
Alignment explanation
Indices: 8782208--8782241 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
8782198 CTGCATCAAA
8782208 CTCTCTCTCTTT
1 CTCTCTCTCTTT
8782220 CTCTCTCTCTTT
1 CTCTCTCTCTTT
8782232 CTCTCTCTCT
1 CTCTCTCTCT
8782242 GACTAGAGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (12 bp):
CTCTCTCTCTTT
Found at i:8784380 original size:19 final size:19
Alignment explanation
Indices: 8784358--8784394 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
8784348 TTAAAATCTC
8784358 ATTTT-TTATTTTTAATTTA
1 ATTTTATTA-TTTTAATTTA
8784377 ATTTTATTATTTTAATTT
1 ATTTTATTATTTTAATTT
8784395 TCAAAAGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (19 bp):
ATTTTATTATTTTAATTTA
Found at i:8784664 original size:26 final size:25
Alignment explanation
Indices: 8784592--8784668 Score: 84
Period size: 26 Copynumber: 3.0 Consensus size: 25
8784582 TTTAGGTTTC
**
8784592 ATTTAAGGTTTTATTTAGGACTTTA
1 ATTTAAGGTTTTATTTAGGGTTTTA
* *
8784617 ATTTTAGGGTTTCATTTAGGGTTTTA
1 A-TTTAAGGTTTTATTTAGGGTTTTA
8784643 AGTTTAAGGTTTTGATTT-GGGTTTTA
1 A-TTTAAGGTTTT-ATTTAGGGTTTTA
8784669 GGATTTTATT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
25 1 0.02
26 38 0.88
27 4 0.09
ACGTcount: A:0.22, C:0.03, G:0.22, T:0.53
Consensus pattern (25 bp):
ATTTAAGGTTTTATTTAGGGTTTTA
Found at i:8784857 original size:49 final size:48
Alignment explanation
Indices: 8784804--8784907 Score: 120
Period size: 50 Copynumber: 2.1 Consensus size: 48
8784794 ATCTAAATAG
* *
8784804 ATTTTCAAAGCAAACTCA-TTTTTTATAATTTTCAAAAATTAATTTTTAT
1 ATTTTCAAA-CAAACT-AGTTTTTCATAATTTTCAAAAACTAATTTTTAT
* *
8784853 ATTTTTTGAAACAAGCTAGTTTTTCATAATTTTCAAAAACTAATTTTTAT
1 A--TTTTCAAACAAACTAGTTTTTCATAATTTTCAAAAACTAATTTTTAT
*
8784903 GTTTT
1 ATTTT
8784908 ATGTATTTTC
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
48 4 0.09
49 2 0.04
50 34 0.72
51 7 0.15
ACGTcount: A:0.36, C:0.10, G:0.05, T:0.50
Consensus pattern (48 bp):
ATTTTCAAACAAACTAGTTTTTCATAATTTTCAAAAACTAATTTTTAT
Found at i:8784971 original size:14 final size:14
Alignment explanation
Indices: 8784936--8784977 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
8784926 TAAAATTTAT
*
8784936 TATTATTATTCATTA
1 TATTTTTATT-ATTA
8784951 -ATCTTTTATTATTA
1 TAT-TTTTATTATTA
8784965 TATTTTTATTATT
1 TATTTTTATTATT
8784978 TAATAATTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 16 0.67
15 8 0.33
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.67
Consensus pattern (14 bp):
TATTTTTATTATTA
Done.