Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25814696
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 122000 characters in sequence are not A, C, G, or T
File 60 of 126
Found at i:12147876 original size:44 final size:44
Alignment explanation
Indices: 12147823--12147980 Score: 158
Period size: 44 Copynumber: 3.6 Consensus size: 44
12147813 AAAACTCCTA
* * *
12147823 TAAACAGAGGCTCAACAACTTTGAAAAATAAAATTAGGCTCTTC
1 TAAACAGAGGCTCAACGACTTTGAAAAATAAAATAAGGCTCATC
* * * *
12147867 TAAGCAGAGGTTCAATGATTTTGAAAAA-ATAAATAAGGCTCATC
1 TAAACAGAGGCTCAACGACTTTGAAAAATA-AAATAAGGCTCATC
* * * *
12147911 TAAACAGAGGCTTAACGACTTTGAAAAAT-AAATAAGACTCCTT
1 TAAACAGAGGCTCAACGACTTTGAAAAATAAAATAAGGCTCATC
* * * *
12147954 TAAATAAAGGCTTAATGACTTTGAAAA
1 TAAACAGAGGCTCAACGACTTTGAAAA
12147981 GTGACTTTGA
Statistics
Matches: 94, Mismatches: 18, Indels: 5
0.80 0.15 0.04
Matches are distributed among these distances:
43 36 0.38
44 58 0.62
ACGTcount: A:0.44, C:0.14, G:0.15, T:0.27
Consensus pattern (44 bp):
TAAACAGAGGCTCAACGACTTTGAAAAATAAAATAAGGCTCATC
Found at i:12147987 original size:13 final size:13
Alignment explanation
Indices: 12147969--12147993 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12147959 AAAGGCTTAA
12147969 TGACTTTGAAAAG
1 TGACTTTGAAAAG
12147982 TGACTTTGAAAA
1 TGACTTTGAAAA
12147994 ATAAATAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.20, T:0.32
Consensus pattern (13 bp):
TGACTTTGAAAAG
Found at i:12147989 original size:56 final size:56
Alignment explanation
Indices: 12147927--12148036 Score: 184
Period size: 56 Copynumber: 2.0 Consensus size: 56
12147917 GAGGCTTAAC
* * * *
12147927 GACTTTGAAAAATAAATAAGACTCCTTTAAATAAAGGCTTAATGACTTTGAAAAGT
1 GACTTTGAAAAATAAATAAAACTCCTTTAAACAAAGGCTCAATGACTTTAAAAAGT
12147983 GACTTTGAAAAATAAATAAAACTCCTTTAAACAAAGGCTCAATGACTTTAAAAA
1 GACTTTGAAAAATAAATAAAACTCCTTTAAACAAAGGCTCAATGACTTTAAAAA
12148037 ATAAATAAAG
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.47, C:0.13, G:0.12, T:0.28
Consensus pattern (56 bp):
GACTTTGAAAAATAAATAAAACTCCTTTAAACAAAGGCTCAATGACTTTAAAAAGT
Found at i:12148037 original size:43 final size:43
Alignment explanation
Indices: 12147984--12148181 Score: 207
Period size: 43 Copynumber: 4.6 Consensus size: 43
12147974 TTGAAAAGTG
* * *
12147984 ACTTTGAAAAATAAATAAAACTCCTTTAAACAAAGGCTCAATG
1 ACTTTGAAAAATAAATAAAGCTCCTTTAAACAAAGACTCAATA
* * * *
12148027 ACTTTAAAAAATAAATAAAGCTCCTCTAATCAGAGACTCAATA
1 ACTTTGAAAAATAAATAAAGCTCCTTTAAACAAAGACTCAATA
* * * * *
12148070 ACTTTGGAAAATAAATAAATCTCTTTTAAGCAAAAACTCAATA
1 ACTTTGAAAAATAAATAAAGCTCCTTTAAACAAAGACTCAATA
* * * * *
12148113 ACTTTTGAAAAATAAACAAAGCTACTTTAAATAAAGGCTCAACA
1 AC-TTTGAAAAATAAATAAAGCTCCTTTAAACAAAGACTCAATA
* * *
12148157 ATTTTGGAAAATAAATAAGGCTCCT
1 ACTTTGAAAAATAAATAAAGCTCCT
12148182 CAACAATCAT
Statistics
Matches: 124, Mismatches: 30, Indels: 2
0.79 0.19 0.01
Matches are distributed among these distances:
43 92 0.74
44 32 0.26
ACGTcount: A:0.48, C:0.16, G:0.09, T:0.27
Consensus pattern (43 bp):
ACTTTGAAAAATAAATAAAGCTCCTTTAAACAAAGACTCAATA
Found at i:12148074 original size:99 final size:101
Alignment explanation
Indices: 12147886--12148080 Score: 227
Period size: 99 Copynumber: 2.0 Consensus size: 101
12147876 GTTCAATGAT
** * * *
12147886 TTTGAAAAAATAAATAAGGCTCATCTAAACAGAGGCTTAACGACTTTGAAAAATAAATAAGACTC
1 TTTGAAAAAATAAATAAAACTCATCTAAACAAAGGCTCAACGACTTTAAAAAATAAATAAGACTC
* * * *
12147951 CTTTAAATAAAGGCTTAATGACTTT-GAAAAGTGAC
66 CTCTAAATAAAGACTCAATAACTTTGGAAAAGTGAC
* * *
12147986 TTTG-AAAAATAAATAAAACTCCTTTAAACAAAGGCTCAATGACTTTAAAAAATAAATAA-AGCT
1 TTTGAAAAAATAAATAAAACTCATCTAAACAAAGGCTCAACGACTTTAAAAAATAAATAAGA-CT
*
12148049 CCTCT-AATCAGAGACTCAATAACTTTGGAAAA
65 CCTCTAAAT-AAAGACTCAATAACTTTGGAAAA
12148081 TAAATAAATC
Statistics
Matches: 79, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
98 4 0.05
99 66 0.84
100 9 0.11
ACGTcount: A:0.47, C:0.14, G:0.12, T:0.27
Consensus pattern (101 bp):
TTTGAAAAAATAAATAAAACTCATCTAAACAAAGGCTCAACGACTTTAAAAAATAAATAAGACTC
CTCTAAATAAAGACTCAATAACTTTGGAAAAGTGAC
Found at i:12148163 original size:87 final size:86
Alignment explanation
Indices: 12147984--12148174 Score: 222
Period size: 87 Copynumber: 2.2 Consensus size: 86
12147974 TTGAAAAGTG
* ** * *
12147984 ACTTTGAAAAATAAATAAAACTCCTTTAAACAAAGGCTCAATGACTTTAAAAAATAAATAAAGCT
1 ACTTTGGAAAATAAATAAAACTCCTTTAAACAAAAACTCAATAACTTTAAAAAATAAACAAAGCT
* * *
12148049 CCTCTAATCAGAGACTCAATA
66 ACTCTAATCAAAGACTCAACA
* * * *
12148070 ACTTTGGAAAATAAATAAATCTCTTTTAAGCAAAAACTCAATAACTTTTGAAAAATAAACAAAGC
1 ACTTTGGAAAATAAATAAAACTCCTTTAAACAAAAACTCAATAAC-TTTAAAAAATAAACAAAGC
* *
12148135 TACTTTAAAT-AAAGGCTCAACA
65 TACTCT-AATCAAAGACTCAACA
*
12148157 ATTTTGGAAAATAAATAA
1 ACTTTGGAAAATAAATAA
12148175 GGCTCCTCAA
Statistics
Matches: 88, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
86 38 0.43
87 47 0.53
88 3 0.03
ACGTcount: A:0.50, C:0.15, G:0.08, T:0.27
Consensus pattern (86 bp):
ACTTTGGAAAATAAATAAAACTCCTTTAAACAAAAACTCAATAACTTTAAAAAATAAACAAAGCT
ACTCTAATCAAAGACTCAACA
Found at i:12149215 original size:17 final size:16
Alignment explanation
Indices: 12149193--12149238 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 16
12149183 TCAGTCCTTC
12149193 TTTTTCATTTTTCATTT
1 TTTTTC-TTTTTCATTT
12149210 TTTTTCTTTTTCTCATTT
1 TTTTTC-TTTT-TCATTT
12149228 TTTTTCTTTTT
1 TTTTTCTTTTT
12149239 TAAGCATAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 1 0.04
17 14 0.52
18 12 0.44
ACGTcount: A:0.07, C:0.13, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTTCTTTTTCATTT
Found at i:12149225 original size:18 final size:17
Alignment explanation
Indices: 12149193--12149239 Score: 76
Period size: 18 Copynumber: 2.7 Consensus size: 17
12149183 TCAGTCCTTC
*
12149193 TTTTTCATTTTTCATTT
1 TTTTTCTTTTTTCATTT
12149210 TTTTTCTTTTTCTCATTT
1 TTTTTCTTTTT-TCATTT
12149228 TTTTTCTTTTTT
1 TTTTTCTTTTTT
12149240 AAGCATAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
17 11 0.39
18 17 0.61
ACGTcount: A:0.06, C:0.13, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTTTCTTTTTTCATTT
Found at i:12159343 original size:85 final size:85
Alignment explanation
Indices: 12159235--12159398 Score: 222
Period size: 85 Copynumber: 1.9 Consensus size: 85
12159225 CCTTCTTTAG
* * ** * *
12159235 CTGTGTACTAGAGTTAGTTATGGGATATAAATGTTCACACCACCTTCAACTTATGAGGTGGCTTT
1 CTGTGTAATAGAGTTAGTCATGGGATATAAACATTCACACCACCTTCAACTTATGAGATGGATTT
12159300 TGT-AGGACAAAGTCCTTGAA
66 TGTGA-GACAAAGTCCTTGAA
* * * *
12159320 CTGTGTAATAGAGTTGGTCATGGGATATAAACATTCACACCACCTTTAACTTGTGAGATGTATTT
1 CTGTGTAATAGAGTTAGTCATGGGATATAAACATTCACACCACCTTCAACTTATGAGATGGATTT
12159385 TGTGAGACAAAGTC
66 TGTGAGACAAAGTC
12159399 ATAAAACCTT
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
85 67 0.99
86 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (85 bp):
CTGTGTAATAGAGTTAGTCATGGGATATAAACATTCACACCACCTTCAACTTATGAGATGGATTT
TGTGAGACAAAGTCCTTGAA
Found at i:12161612 original size:15 final size:17
Alignment explanation
Indices: 12161575--12161618 Score: 58
Period size: 15 Copynumber: 2.7 Consensus size: 17
12161565 AATTGAAAAC
12161575 AAATAAAA-AAACTCAA
1 AAATAAAATAAACTCAA
12161591 AATATAAAATAAA-T-AA
1 AA-ATAAAATAAACTCAA
12161607 AAATAAAATAAA
1 AAATAAAATAAA
12161619 AAAGATACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 10 0.38
16 6 0.23
17 7 0.27
18 3 0.12
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.18
Consensus pattern (17 bp):
AAATAAAATAAACTCAA
Found at i:12161621 original size:22 final size:22
Alignment explanation
Indices: 12161575--12161621 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
12161565 AATTGAAAAC
* *
12161575 AAATAAAAAAACTCAAAATATA
1 AAATAAAAAAAATCAAAATAAA
12161597 AAATAAATAAAAAT-AAAATAAA
1 AAATAAA-AAAAATCAAAATAAA
12161619 AAA
1 AAA
12161622 GATACCAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (22 bp):
AAATAAAAAAAATCAAAATAAA
Found at i:12162770 original size:14 final size:15
Alignment explanation
Indices: 12162743--12162775 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
12162733 TAGACAAGTA
*
12162743 AAATTAAACGAAATT
1 AAATAAAACGAAATT
12162758 AAATAAAAC-AAATT
1 AAATAAAACGAAATT
12162772 AAAT
1 AAAT
12162776 CAAATTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.67, C:0.06, G:0.03, T:0.24
Consensus pattern (15 bp):
AAATAAAACGAAATT
Found at i:12168820 original size:14 final size:13
Alignment explanation
Indices: 12168789--12168880 Score: 52
Period size: 14 Copynumber: 7.2 Consensus size: 13
12168779 CAACAAAAGT
12168789 AAAT-AAATAATA
1 AAATAAAATAATA
*
12168801 AAATAAAATACATG
1 AAATAAAATA-ATA
*
12168815 AAATAAAAAAATTGA
1 AAATAAAATAA-T-A
12168830 AAAT-AAATAA-A
1 AAATAAAATAATA
**
12168841 AAA-AACTTAA-A
1 AAATAAAATAATA
*
12168852 ATATAAAATAAATA
1 AAATAAAAT-AATA
*
12168866 AAATAGAATAA-A
1 AAATAAAATAATA
12168878 AAA
1 AAA
12168881 GATACCTATA
Statistics
Matches: 61, Mismatches: 11, Indels: 16
0.69 0.12 0.18
Matches are distributed among these distances:
11 11 0.18
12 11 0.18
13 10 0.16
14 25 0.41
15 4 0.07
ACGTcount: A:0.74, C:0.02, G:0.03, T:0.21
Consensus pattern (13 bp):
AAATAAAATAATA
Found at i:12168837 original size:19 final size:18
Alignment explanation
Indices: 12168815--12168880 Score: 66
Period size: 20 Copynumber: 3.6 Consensus size: 18
12168805 AAAATACATG
12168815 AAATAAAAAAATTGAAAAT
1 AAATAAAAAAATT-AAAAT
12168834 AAATAAAAAAAACTTAAAAT
1 AAAT-AAAAAAA-TTAAAAT
12168854 --ATAAAATAAA-TAAAAT
1 AAATAAAA-AAATTAAAAT
12168870 AGAATAAAAAA
1 A-AATAAAAAA
12168881 GATACCTATA
Statistics
Matches: 41, Mismatches: 0, Indels: 13
0.76 0.00 0.24
Matches are distributed among these distances:
16 6 0.15
17 4 0.10
18 7 0.17
19 10 0.24
20 12 0.29
21 2 0.05
ACGTcount: A:0.76, C:0.02, G:0.03, T:0.20
Consensus pattern (18 bp):
AAATAAAAAAATTAAAAT
Found at i:12170891 original size:58 final size:59
Alignment explanation
Indices: 12170727--12170943 Score: 316
Period size: 58 Copynumber: 3.7 Consensus size: 59
12170717 TTGTGTAGGA
* * *
12170727 AAAATTGATACTTTCAACTTTTTCC-CAAAAATATTTTTTTTGAAA-CTTTTAATTTTGAGG
1 AAAATTGATACTTTCAAC-TTTTCCTCAAAAATATTTTTTTAGAAAGC--TTATTTTTAAGG
*
12170787 AAAATTGATACTTTCAACTTTT-TTCCAAAAATATTTTTTTAGAAAGCTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCT-CAAAAATATTTTTTTAGAAAGCTTATTTTTAAGG
* *
12170846 AAAATTGATACTTTCAACTTTTCCTCCAAAATA-TTTTTTAGAAAGCTTATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTAGAAAGCTTATTTTTAAGG
12170904 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTT
12170944 GAATTTTATT
Statistics
Matches: 144, Mismatches: 8, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
58 56 0.39
59 49 0.34
60 38 0.26
61 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.45
Consensus pattern (59 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTAGAAAGCTTATTTTTAAGG
Found at i:12171559 original size:12 final size:12
Alignment explanation
Indices: 12171510--12171566 Score: 53
Period size: 12 Copynumber: 4.8 Consensus size: 12
12171500 CCAGAATTTG
* *
12171510 AAAATTTTCCAA
1 AAAATTCTCAAA
* *
12171522 AAATTTCTAAAA
1 AAAATTCTCAAA
*
12171534 AAAATTCACAAA
1 AAAATTCTCAAA
*
12171546 AAAATTCTC-CA
1 AAAATTCTCAAA
12171557 AAAATTCTCA
1 AAAATTCTCA
12171567 CCGATTCTTA
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
11 10 0.29
12 25 0.71
ACGTcount: A:0.54, C:0.18, G:0.00, T:0.28
Consensus pattern (12 bp):
AAAATTCTCAAA
Found at i:12171908 original size:42 final size:41
Alignment explanation
Indices: 12171857--12171938 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 41
12171847 AAATCAGATA
* *
12171857 AAAATATTAATAGATAATTAAAAGA-AAATAATCAAATAAATC
1 AAAATATTAACAGATAAATAAAA-ATAAATAAT-AAATAAATC
*
12171899 AAAATATTAACAGATAAATAAAAATAAATAATAGATAAAT
1 AAAATATTAACAGATAAATAAAAATAAATAATAAATAAAT
12171939 TATAATATAC
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
41 8 0.22
42 28 0.78
ACGTcount: A:0.66, C:0.04, G:0.05, T:0.26
Consensus pattern (41 bp):
AAAATATTAACAGATAAATAAAAATAAATAATAAATAAATC
Found at i:12171927 original size:4 final size:4
Alignment explanation
Indices: 12171912--12172078 Score: 55
Period size: 4 Copynumber: 42.0 Consensus size: 4
12171902 ATATTAACAG
* * * *
12171912 ATAA AT-A A-AA ATAA AT-A ATAG ATAA ATTATA ATAT ACAA ATAG A-AA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA A-TA-A ATAA ATAA ATAA ATAA
* * * * * *
12171958 AT-A AT-A ATAA ATAC ATAT ATATA AT-A ATAT ATAA ATAG CTAA GT-A
1 ATAA ATAA ATAA ATAA ATAA ATA-A ATAA ATAA ATAA ATAA ATAA ATAA
* * * *
12172003 AT-A ATAA ATAT ATATA TTAA CATAA AAAA ATAA ATATA TATTA ATAA
1 ATAA ATAA ATAA ATA-A ATAA -ATAA ATAA ATAA ATA-A -ATAA ATAA
* *
12172050 ATAGT ATTA ATAA ATAA ATAA ATAA ATAA
1 ATA-A ATAA ATAA ATAA ATAA ATAA ATAA
12172079 TACATAAGAT
Statistics
Matches: 118, Mismatches: 30, Indels: 30
0.66 0.17 0.17
Matches are distributed among these distances:
3 23 0.19
4 76 0.64
5 15 0.13
6 4 0.03
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.31
Consensus pattern (4 bp):
ATAA
Found at i:12171983 original size:20 final size:20
Alignment explanation
Indices: 12171958--12172085 Score: 83
Period size: 18 Copynumber: 6.5 Consensus size: 20
12171948 CAAATAGAAA
*
12171958 ATAATAATAAATACATATAT
1 ATAATAATAAATAAATATAT
*
12171978 ATAATAATATATAAATAGCTA-
1 ATAATAATAAATAAATA--TAT
*
12171999 AGTAATAATAAATATATATAT
1 A-TAATAATAAATAAATATAT
* * *
12172020 -TAA-CATAAAAAAATAAAT
1 ATAATAATAAATAAATATAT
*
12172038 AT-AT-ATTAATAAATAGTAT
1 ATAATAATAAATAAATA-TAT
12172057 -TAATAAATAAATAAATA-A-
1 ATAAT-AATAAATAAATATAT
12172075 ATAATACATAA
1 ATAATA-ATAA
12172086 GATACAAAGA
Statistics
Matches: 84, Mismatches: 12, Indels: 25
0.69 0.10 0.21
Matches are distributed among these distances:
18 23 0.27
19 17 0.20
20 17 0.20
21 11 0.13
22 16 0.19
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (20 bp):
ATAATAATAAATAAATATAT
Found at i:12172005 original size:42 final size:41
Alignment explanation
Indices: 12171914--12172019 Score: 115
Period size: 42 Copynumber: 2.5 Consensus size: 41
12171904 ATTAACAGAT
* * *
12171914 AAATAAAAATAAATA-ATAGATAAATTATAATATACAAATAGA
1 AAATAATAATAAATACAT--ATATATAATAATATACAAATAGA
* *
12171956 AAATAATAATAAATACATATATATAATAATATATAAATAGCT
1 AAATAATAATAAATACATATATATAATAATATACAAATAG-A
* *
12171998 AAGTAATAATAAATATATATAT
1 AAATAATAATAAATACATATAT
12172020 TAACATAAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
41 19 0.35
42 34 0.62
43 2 0.04
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.31
Consensus pattern (41 bp):
AAATAATAATAAATACATATATATAATAATATACAAATAGA
Found at i:12172059 original size:13 final size:14
Alignment explanation
Indices: 12172031--12172077 Score: 55
Period size: 13 Copynumber: 3.6 Consensus size: 14
12172021 AACATAAAAA
12172031 AATAAATATATATT
1 AATAAATATATATT
*
12172045 AATAAATA-GTATT
1 AATAAATATATATT
*
12172058 AATAAATA-A-ATA
1 AATAAATATATATT
12172070 AATAAATA
1 AATAAATA
12172078 ATACATAAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
12 10 0.33
13 12 0.40
14 8 0.27
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (14 bp):
AATAAATATATATT
Found at i:12172101 original size:29 final size:29
Alignment explanation
Indices: 12172069--12172157 Score: 79
Period size: 29 Copynumber: 3.0 Consensus size: 29
12172059 ATAAATAAAT
* * *
12172069 AAATAAATAATACATAAGATACAAAGAAA
1 AAATAAATAAAACATAAAATAAAAAGAAA
* * *
12172098 AAATATATAAAATATAAAATAAAAATAAA
1 AAATAAATAAAACATAAAATAAAAAGAAA
* * * *
12172127 AAATACAAAAAAACAAAAAACAAAAACAAA
1 AAATA-AATAAAACATAAAATAAAAAGAAA
12172157 A
1 A
12172158 TGGGCTTACC
Statistics
Matches: 47, Mismatches: 12, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
29 28 0.60
30 19 0.40
ACGTcount: A:0.76, C:0.07, G:0.02, T:0.15
Consensus pattern (29 bp):
AAATAAATAAAACATAAAATAAAAAGAAA
Found at i:12172124 original size:13 final size:14
Alignment explanation
Indices: 12172087--12172151 Score: 53
Period size: 15 Copynumber: 4.6 Consensus size: 14
12172077 AATACATAAG
12172087 ATACAAAGA-AAAAA
1 ATACAAA-ATAAAAA
* *
12172101 TATATAAAATATAAA
1 -ATACAAAATAAAAA
12172116 ATA-AAAATAAAAA
1 ATACAAAATAAAAA
*
12172129 ATACAAAAAAACAAA
1 ATACAAAATAA-AAA
*
12172144 AAACAAAA
1 ATACAAAA
12172152 ACAAAATGGG
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
13 12 0.29
14 10 0.24
15 20 0.48
ACGTcount: A:0.78, C:0.06, G:0.02, T:0.14
Consensus pattern (14 bp):
ATACAAAATAAAAA
Found at i:12172131 original size:20 final size:22
Alignment explanation
Indices: 12172069--12172136 Score: 70
Period size: 22 Copynumber: 3.1 Consensus size: 22
12172059 ATAAATAAAT
* *
12172069 AAATAAATAATACATAAGATACA
1 AAATAAA-AATATATAAAATACA
*
12172092 AAGA-AAAAATATATAAAATATA
1 AA-ATAAAAATATATAAAATACA
12172114 AAATAAAAATA-A-AAAATACA
1 AAATAAAAATATATAAAATACA
12172134 AAA
1 AAA
12172137 AAACAAAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
20 10 0.26
21 2 0.05
22 21 0.54
23 5 0.13
24 1 0.03
ACGTcount: A:0.74, C:0.04, G:0.03, T:0.19
Consensus pattern (22 bp):
AAATAAAAATATATAAAATACA
Found at i:12172139 original size:18 final size:18
Alignment explanation
Indices: 12172104--12172151 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
12172094 GAAAAAATAT
*
12172104 ATAAAATATAAAATAAAA
1 ATAAAAAATAAAATAAAA
*
12172122 ATAAAAAATACAA-AAAA
1 ATAAAAAATAAAATAAAA
* *
12172139 ACAAAAAACAAAA
1 ATAAAAAATAAAA
12172152 ACAAAATGGG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.12
Consensus pattern (18 bp):
ATAAAAAATAAAATAAAA
Found at i:12172505 original size:41 final size:41
Alignment explanation
Indices: 12172335--12172589 Score: 257
Period size: 41 Copynumber: 6.1 Consensus size: 41
12172325 TTGATCAAAA
*
12172335 CTCCTCTAAGT-AGAGGCACAACGACTTTGAAAAACATAAACAAT-G
1 CTCCTCTAA-TCAGAGGCTCAACGACTTTG-AAAA-AT--A-AATGG
* * *
12172380 CTCCTCTTATCAGAGGCTTAACGACTTT-AAAAATAAATAAAG
1 CTCCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAAT--GG
* *
12172422 CTCCTCTAATCAGAGGCTCAATGACTTTTGAAAAGTAAATGG
1 CTCCTCTAATCAGAGGCTCAACGAC-TTTGAAAAATAAATGG
* *
12172464 CTCCTCTAATCAGAGGTTCAATGACTTTGAAAAATAAATGG
1 CTCCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATGG
* * *
12172505 CTCCTCTAATCAAAGGCTCAACAACTTTGAAAAATAAATTG
1 CTCCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATGG
* * * *
12172546 CTTCTCTAAACAGAGGCATC-ACAACTTTGAAAAATAAATTG
1 CTCCTCTAATCAGAGGC-TCAACGACTTTGAAAAATAAATGG
12172587 CTC
1 CTC
12172590 ATTGACAATC
Statistics
Matches: 184, Mismatches: 19, Indels: 18
0.83 0.09 0.08
Matches are distributed among these distances:
39 3 0.02
40 1 0.01
41 88 0.48
42 52 0.28
43 7 0.04
44 10 0.05
45 23 0.12
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (41 bp):
CTCCTCTAATCAGAGGCTCAACGACTTTGAAAAATAAATGG
Found at i:12173571 original size:29 final size:28
Alignment explanation
Indices: 12173539--12173607 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 28
12173529 CTTTGAGTCC
12173539 TCTTTTTTTATTCACTTTTTTTCA-TTTTT
1 TCTTTTTTT-TTCA-TTTTTTTCATTTTTT
*
12173568 TCTTTTTCATTTTCATTTTTTTTATTTTTTT
1 TCTTTTT--TTTTCATTTTTTTCA-TTTTTT
12173599 TCTTTTTTT
1 TCTTTTTTT
12173608 CAGGCATAGT
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
29 17 0.49
30 4 0.11
31 14 0.40
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.80
Consensus pattern (28 bp):
TCTTTTTTTTTCATTTTTTTCATTTTTT
Found at i:12178346 original size:57 final size:57
Alignment explanation
Indices: 12178258--12178640 Score: 425
Period size: 57 Copynumber: 6.7 Consensus size: 57
12178248 TTGTGCAGAA
* * * * **
12178258 AAAATTGATACTTTCAACTTTTTCTC-AAAATATTTTTTAGAAATTTTAATCTCGAGG
1 AAAATTGATACTTTCAAC-TTTTCCCAAAAATATTTTTTAGAAAATTTATTTTTAAGG
* * * * * ** *
12178315 AAAATTGATACTTTCAACCTTTCCCTAAAATATCTTTT-GAAACTTTAATTTCGAGA
1 AAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTAGAAAATTTATTTTTAAGG
**
12178371 AAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTT-GAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTAGAAAATTTATTTTTAAGG
*** *
12178428 AAAATTGATACTTTCAACTTTTCCTCAAAAA-CCGTTTTAG-AAATTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTAGAAAATTTATTTTTAAGG
* * *
12178484 AAAATTGATACTTTCAACTTTTTCCCAAAAACCTTTTTTTTAAAAAATTTATTTTTAAAG
1 AAAATTGATACTTTCAAC-TTTTCCCAAAAA--TATTTTTTAGAAAATTTATTTTTAAGG
* * *
12178544 AAAATTGATACTTTTAACTTTTCCTCAAAAATTTTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTAGAAAATTTATTTTTAAGG
12178602 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
1 AAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTT
12178641 TTGGATTTTA
Statistics
Matches: 285, Mismatches: 31, Indels: 19
0.85 0.09 0.06
Matches are distributed among these distances:
56 87 0.31
57 90 0.32
58 58 0.20
59 13 0.05
60 37 0.13
ACGTcount: A:0.36, C:0.14, G:0.06, T:0.44
Consensus pattern (57 bp):
AAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTAGAAAATTTATTTTTAAGG
Found at i:12178485 original size:113 final size:112
Alignment explanation
Indices: 12178257--12178632 Score: 447
Period size: 113 Copynumber: 3.3 Consensus size: 112
12178247 TTTGTGCAGA
* * * * **
12178257 AAAAATTGATACTTTCAACTTTTTCTCAAAATA--TTTTTTAGAAATTTTAATCTCGAGGAAAAT
1 AAAAATTGATACTTTCAACTTTTCCTCAAAA-ACCTTTTTTAGAAAATTTATTTTTAAGGAAAAT
* * **
12178320 TGATACTTTCAACCTTTCC-CTAAAATATCTTTTGAAACTTTAATTTCGAG
65 TGATACTTTCAACTTTTCCTC-AAAA-ATCTTTTGAAA-TTTATTTTTAAG
12178370 AAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTT-GAAAATTTATTTTTAAGGAAAATT
1 AAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTAGAAAATTTATTTTTAAGGAAAATT
*
12178434 GATACTTTCAACTTTTCCTCAAAAACCGTTTTAGAAATTTATTTTTAAG
66 GATACTTTCAACTTTTCCTCAAAAATC-TTTT-GAAATTTATTTTTAAG
* *
12178483 AAAAATTGATACTTTCAACTTTTTCC-CAAAAACCTTTTTTTTAAAAAATTTATTTTTAAAGAAA
1 AAAAATTGATACTTTCAAC-TTTTCCTCAAAAACC--TTTTTTAGAAAATTTATTTTTAAGGAAA
* *
12178547 ATTGATACTTTTAACTTTTCCTCAAAAATTTTTTTTTGAAAATTTATTTTTAAG
63 ATTGATACTTTCAACTTTTCCTCAAAAA---TCTTTTG-AAATTTATTTTTAAG
* *
12178601 GAAAATTGATACTTTCAACTTTTCCCCAAAAA
1 AAAAATTGATACTTTCAACTTTTCCTCAAAAA
12178633 TATTTTTTTT
Statistics
Matches: 232, Mismatches: 17, Indels: 23
0.85 0.06 0.08
Matches are distributed among these distances:
112 3 0.01
113 110 0.47
114 17 0.07
115 6 0.03
116 46 0.20
117 7 0.03
118 43 0.19
ACGTcount: A:0.37, C:0.14, G:0.06, T:0.43
Consensus pattern (112 bp):
AAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTAGAAAATTTATTTTTAAGGAAAATT
GATACTTTCAACTTTTCCTCAAAAATCTTTTGAAATTTATTTTTAAG
Found at i:12178666 original size:5 final size:5
Alignment explanation
Indices: 12178658--12178764 Score: 62
Period size: 5 Copynumber: 21.6 Consensus size: 5
12178648 TTATTTAAAG
* * *
12178658 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAA- AAATT AAAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAAAT AAAAT
* * * * *
12178707 AAAAG AAAAGT AAAAC AAAA- AATA- AAAAT AAAAT AAAGAT AAAAG AATAT
1 AAAAT AAAA-T AAAAT AAAAT AAAAT AAAAT AAAAT AAA-AT AAAAT AAAAT
*
12178757 TAAAT AAA
1 AAAAT AAA
12178765 CTTAATCTAA
Statistics
Matches: 78, Mismatches: 16, Indels: 16
0.71 0.15 0.15
Matches are distributed among these distances:
3 3 0.04
4 9 0.12
5 51 0.65
6 11 0.14
7 4 0.05
ACGTcount: A:0.77, C:0.02, G:0.06, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:12178692 original size:30 final size:29
Alignment explanation
Indices: 12178657--12178743 Score: 104
Period size: 31 Copynumber: 2.9 Consensus size: 29
12178647 TTTATTTAAA
*
12178657 GAAAATAAAATAATAAAACAAAATAAAAGT
1 GAAAATAAAA-AATAAAAAAAAATAAAAGT
*
12178687 GAAAATAAAAAAATTAAAAAAAAAGAAAAGT
1 GAAAAT-AAAAAA-TAAAAAAAAATAAAAGT
*
12178718 -AAAACAAAAAATAAAAATAAAATAAA
1 GAAAATAAAAAATAAAAA-AAAATAAA
12178744 GATAAAAGAA
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
28 6 0.12
29 13 0.26
30 12 0.24
31 19 0.38
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (29 bp):
GAAAATAAAAAATAAAAAAAAATAAAAGT
Found at i:12178713 original size:54 final size:56
Alignment explanation
Indices: 12178654--12178760 Score: 134
Period size: 54 Copynumber: 1.9 Consensus size: 56
12178644 GATTTTATTT
* *
12178654 AAAGAAAA-TAAAATAATAAAA-CAAAATAAAAGTGAAA-ATAAAA-AA-ATTAAAAAA
1 AAAGAAAAGTAAAACAA-AAAATAAAAATAAAA-T-AAAGATAAAAGAATATTAAAAAA
12178708 AAAGAAAAGTAAAACAAAAAATAAAAATAAAATAAAGATAAAAGAATATTAAA
1 AAAGAAAAGTAAAACAAAAAATAAAAATAAAATAAAGATAAAAGAATATTAAA
12178761 TAAACTTAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
53 3 0.07
54 19 0.41
55 18 0.39
56 6 0.13
ACGTcount: A:0.77, C:0.02, G:0.07, T:0.15
Consensus pattern (56 bp):
AAAGAAAAGTAAAACAAAAAATAAAAATAAAATAAAGATAAAAGAATATTAAAAAA
Found at i:12178715 original size:16 final size:17
Alignment explanation
Indices: 12178670--12178727 Score: 52
Period size: 16 Copynumber: 3.6 Consensus size: 17
12178660 AATAAAATAA
*
12178670 TAAAAC-AAAATAAAAG
1 TAAAACAAAAAGAAAAG
* * *
12178686 TGAAA-ATAAA-AAAAT
1 TAAAACAAAAAGAAAAG
12178701 TAAAA-AAAAAGAAAAG
1 TAAAACAAAAAGAAAAG
12178717 TAAAACAAAAA
1 TAAAACAAAAA
12178728 ATAAAAATAA
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
15 12 0.36
16 16 0.48
17 5 0.15
ACGTcount: A:0.78, C:0.03, G:0.07, T:0.12
Consensus pattern (17 bp):
TAAAACAAAAAGAAAAG
Found at i:12178716 original size:31 final size:30
Alignment explanation
Indices: 12178657--12178739 Score: 98
Period size: 30 Copynumber: 2.8 Consensus size: 30
12178647 TTTATTTAAA
* * *
12178657 GAAAATAAAATAATAAAACAAAATAAAAGT
1 GAAAATAAAAAAATAAAAAAAAAGAAAAGT
12178687 GAAAATAAAAAAATTAAAAAAAAAGAAAAGT
1 GAAAATAAAAAAA-TAAAAAAAAAGAAAAGT
*
12178718 -AAAA-CAAAAAATAAAAATAAAA
1 GAAAATAAAAAAATAAAAA-AAAA
12178740 TAAAGATAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
28 6 0.13
29 10 0.21
30 16 0.34
31 15 0.32
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.13
Consensus pattern (30 bp):
GAAAATAAAAAAATAAAAAAAAAGAAAAGT
Found at i:12178721 original size:6 final size:6
Alignment explanation
Indices: 12178658--12178750 Score: 52
Period size: 6 Copynumber: 15.5 Consensus size: 6
12178648 TTATTTAAAG
* * *
12178658 AAAAT- AAAATA ATAAA-A CAAAATA AAAGTG AAAATA AAAA-A ATTAAAAA
1 AAAATA AAAATA A-AAATA -AAAATA AAAATA AAAATA AAAATA A--AAATA
* * *
12178707 AAAAGA AAAGTA AAACA-A AAAATA AAAAT- AAAATA AAGATA AAA
1 AAAATA AAAATA AAA-ATA AAAATA AAAATA AAAATA AAAATA AAA
12178751 GAATATTAAA
Statistics
Matches: 68, Mismatches: 10, Indels: 19
0.70 0.10 0.20
Matches are distributed among these distances:
5 13 0.19
6 45 0.66
7 8 0.12
8 2 0.03
ACGTcount: A:0.78, C:0.02, G:0.05, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:12179088 original size:14 final size:15
Alignment explanation
Indices: 12179064--12179092 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
12179054 CTCCTCCCTC
12179064 TCTCTTTCTTTTTCT
1 TCTCTTTCTTTTTCT
12179079 TCTC-TTCTTTTTCT
1 TCTCTTTCTTTTTCT
12179093 CTAGAACACC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (15 bp):
TCTCTTTCTTTTTCT
Found at i:12179819 original size:6 final size:6
Alignment explanation
Indices: 12179808--12179895 Score: 63
Period size: 6 Copynumber: 14.2 Consensus size: 6
12179798 AATACCTAAG
* * * * *
12179808 ATAAAA AT-AAA AGAAAA ATATAT ATAAAA AAACAATA ATAATA ATAAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATA-AA-A ATAAAA ATAAAA
*
12179857 ATAAAA ATAAAA ATGTAAA ATACAAA A-ATAAA ATAAAA A
1 ATAAAA ATAAAA AT-AAAA ATA-AAA ATA-AAA ATAAAA A
12179896 AGAAAATAGA
Statistics
Matches: 63, Mismatches: 13, Indels: 12
0.72 0.15 0.14
Matches are distributed among these distances:
5 4 0.06
6 43 0.68
7 13 0.21
8 3 0.05
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.19
Consensus pattern (6 bp):
ATAAAA
Found at i:12179844 original size:17 final size:16
Alignment explanation
Indices: 12179808--12179869 Score: 56
Period size: 16 Copynumber: 3.8 Consensus size: 16
12179798 AATACCTAAG
*
12179808 ATAAAAATAAAAGAAAA
1 ATAATAATAAAA-AAAA
12179825 AT-ATATATAAAAAAACA
1 ATAATA-ATAAAAAAA-A
*
12179842 ATAATAAT-AATAAAA
1 ATAATAATAAAAAAAA
*
12179857 ATAAAAATAAAAA
1 ATAATAATAAAAA
12179870 TGTAAAATAC
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
15 8 0.22
16 13 0.35
17 13 0.35
18 3 0.08
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (16 bp):
ATAATAATAAAAAAAA
Found at i:12179896 original size:13 final size:13
Alignment explanation
Indices: 12179810--12179896 Score: 68
Period size: 13 Copynumber: 6.3 Consensus size: 13
12179800 TACCTAAGAT
*
12179810 AAAAATAAAAGAA
1 AAAAATAAAATAA
12179823 AAATATATATAAA-AA
1 AAA-A-ATA-AAATAA
*
12179838 AACAATAATAATAA
1 AAAAATAA-AATAA
12179852 TAAAAATAAAAATAA
1 -AAAAAT-AAAATAA
** *
12179867 AAATGTAAAATAC
1 AAAAATAAAATAA
12179880 AAAAATAAAATAA
1 AAAAATAAAATAA
12179893 AAAA
1 AAAA
12179897 GAAAATAGAC
Statistics
Matches: 59, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
12 1 0.02
13 28 0.47
14 8 0.14
15 17 0.29
16 5 0.08
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.18
Consensus pattern (13 bp):
AAAAATAAAATAA
Found at i:12179901 original size:12 final size:12
Alignment explanation
Indices: 12179850--12179903 Score: 56
Period size: 12 Copynumber: 4.3 Consensus size: 12
12179840 CAATAATAAT
12179850 AATAAAAATA-AA
1 AATAAAAA-AGAA
*
12179862 AATAAAAATGTAA
1 AATAAAAAAG-AA
*
12179875 AATACAAAAATAA
1 AATA-AAAAAGAA
12179888 AATAAAAAAGAA
1 AATAAAAAAGAA
12179900 AATA
1 AATA
12179904 GACTTACCTA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
12 19 0.54
13 12 0.34
14 4 0.11
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.17
Consensus pattern (12 bp):
AATAAAAAAGAA
Found at i:12186265 original size:58 final size:58
Alignment explanation
Indices: 12186117--12186528 Score: 448
Period size: 58 Copynumber: 7.1 Consensus size: 58
12186107 TTGTGTAGGA
* ** * *
12186117 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTG-AAACTT-TTAATTTCGAGA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAAT-TCATTTTTGAAAACTTATT--TTT-AAGG
*
12186177 AAAATTGATACTTTCAACTTTTCCTCAAAAATTCACTTTTGAAAACTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATTCATTTTTGAAAACTTATTTTTAAGG
* * * * *
12186235 AAAATTGATACTTTCAACTTTTCCTTAAAAATTCACTTTTGAAAACTTGTTTCTAAGA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATTCATTTTTGAAAACTTATTTTTAAGG
* *
12186293 AAAATTGATACTTTCAACTTTTCTTCAAAAA-TCTATTTTTGAAAACTTATTTTTAAAG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATTC-ATTTTTGAAAACTTATTTTTAAGG
* * ** *
12186351 AAAATTGATATTTTCAACTTTTTCC-CAAAAATAT-TTTTTTAGAAAGTTTATTTTCAAGG
1 AAAATTGATACTTTCAAC-TTTTCCTCAAAAAT-TCATTTTT-GAAAACTTATTTTTAAGG
* *
12186410 AAAATTGATACTTTCAACTTTTCCTCAAAAA-T-ATTTCTTAGAAAGCTTATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATTCATTT-TT-GAAAACTTATTTTTAAGG
* * *
12186468 AAAATTGATACTTTCAACTTTTCCTCAAAAA-T-ATTTTTTAAAA-TTTTATTTTAAAG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATTCATTTTTGAAAACTTAT-TTTTAAGG
12186524 AAAAT
1 AAAAT
12186529 GAAATAATAA
Statistics
Matches: 310, Mismatches: 32, Indels: 24
0.85 0.09 0.07
Matches are distributed among these distances:
55 3 0.01
56 14 0.05
57 8 0.03
58 194 0.63
59 51 0.16
60 38 0.12
61 2 0.01
ACGTcount: A:0.37, C:0.13, G:0.07, T:0.43
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATTCATTTTTGAAAACTTATTTTTAAGG
Found at i:12186421 original size:175 final size:172
Alignment explanation
Indices: 12186115--12186528 Score: 491
Period size: 175 Copynumber: 2.4 Consensus size: 172
12186105 TTTTGTGTAG
* * **
12186115 GAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTG-AAACTTTTAATTTCGAGAAA
1 GAAAAATTGATACTTTCAACTTTTCCTC-AAAA-ATTATTTTTGAAAACTTTT--TTTAAAG-AA
*
12186179 AATTGATACTTTCAACTTTTCCTCAAAAATTCACTTTTGAAAACTTATTTTTAAGGAAAATTGAT
61 AATTGATACTTTCAACTTTTCCTCAAAAATTCACTTTTGAAAACTTATTTTCAAGGAAAATTGAT
* *
12186244 ACTTTCAACTTTTCCTTAAAAATTCACTT-TT-GAAAACTT-GTTTCTAA
126 ACTTTCAACTTTTCCTCAAAAA-T-ACTTCTTAGAAAACTTATTTTC-AA
*
12186291 GAAAAATTGATACTTTCAACTTTTCTTCAAAAATCTATTTTTGAAAACTTATTTTTAAAGAAAAT
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAAT-TATTTTTGAAAACTT-TTTTTAAAGAAAAT
* ** **
12186356 TGATATTTTCAACTTTTTCC-CAAAAATAT-TTTTTTAGAAAGTTTATTTTCAAGGAAAATTGAT
64 TGATACTTTCAAC-TTTTCCTCAAAAAT-TCACTTTT-GAAAACTTATTTTCAAGGAAAATTGAT
* *
12186419 ACTTTCAACTTTTCCTCAAAAATATTTCTTAGAAAGCTTATTTTCAA
126 ACTTTCAACTTTTCCTCAAAAATACTTCTTAGAAAACTTATTTTCAA
* * *
12186466 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-TATTTTTTAAAATTTTATTTTAAAGAAAAT
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAATTATTTTTGAAAACTTT-TTTTAAAGAAAAT
12186529 GAAATAATAA
Statistics
Matches: 209, Mismatches: 19, Indels: 23
0.83 0.08 0.09
Matches are distributed among these distances:
172 1 0.00
173 29 0.14
174 33 0.16
175 108 0.52
176 36 0.17
177 2 0.01
ACGTcount: A:0.37, C:0.13, G:0.07, T:0.43
Consensus pattern (172 bp):
GAAAAATTGATACTTTCAACTTTTCCTCAAAAATTATTTTTGAAAACTTTTTTTAAAGAAAATTG
ATACTTTCAACTTTTCCTCAAAAATTCACTTTTGAAAACTTATTTTCAAGGAAAATTGATACTTT
CAACTTTTCCTCAAAAATACTTCTTAGAAAACTTATTTTCAA
Found at i:12186559 original size:27 final size:28
Alignment explanation
Indices: 12186529--12186592 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 28
12186519 TAAAGAAAAT
*
12186529 GAAATAATAAAAT-AAATTAAAAATAAA
1 GAAATAATAAAATAAAAATAAAAATAAA
*
12186556 GAAA-AATAAATTAAAAATAAAAATAAA
1 GAAATAATAAAATAAAAATAAAAATAAA
*
12186583 -AAATATTAAA
1 GAAATAATAAA
12186593 CAATTCTAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 10 0.31
27 22 0.69
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (28 bp):
GAAATAATAAAATAAAAATAAAAATAAA
Found at i:12186560 original size:10 final size:11
Alignment explanation
Indices: 12186537--12186576 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
12186527 ATGAAATAAT
12186537 AAAATAAATTA
1 AAAATAAATTA
*
12186548 AAAATAAA-GA
1 AAAATAAATTA
12186558 AAAATAAATTA
1 AAAATAAATTA
12186569 AAAATAAA
1 AAAATAAA
12186577 AATAAAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 9 0.35
11 17 0.65
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.20
Consensus pattern (11 bp):
AAAATAAATTA
Found at i:12186562 original size:17 final size:18
Alignment explanation
Indices: 12186519--12186579 Score: 51
Period size: 17 Copynumber: 3.6 Consensus size: 18
12186509 AATTTTATTT
12186519 TAAAG-AAAATGAAATAA
1 TAAAGAAAAATGAAATAA
* *
12186536 TAAA-ATAAATTAAA-AA
1 TAAAGAAAAATGAAATAA
12186552 TAAAGAAAAAT-AAATTAA
1 TAAAGAAAAATGAAA-TAA
*
12186570 -AAATAAAAAT
1 TAAAGAAAAAT
12186580 AAAAAATATT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
16 9 0.25
17 25 0.69
18 2 0.06
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (18 bp):
TAAAGAAAAATGAAATAA
Found at i:12186563 original size:21 final size:21
Alignment explanation
Indices: 12186537--12186576 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
12186527 ATGAAATAAT
12186537 AAAATAAATTAAAAATAAAGA
1 AAAATAAATTAAAAATAAAGA
12186558 AAAATAAATTAAAAATAAA
1 AAAATAAATTAAAAATAAA
12186577 AATAAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.20
Consensus pattern (21 bp):
AAAATAAATTAAAAATAAAGA
Found at i:12186583 original size:11 final size:11
Alignment explanation
Indices: 12186537--12186584 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
12186527 ATGAAATAAT
*
12186537 AAAATAAATTA
1 AAAATAAAATA
*
12186548 AAAAT-AAAGA
1 AAAATAAAATA
*
12186558 AAAATAAATTA
1 AAAATAAAATA
12186569 AAAATAAAAATA
1 AAAAT-AAAATA
12186581 AAAA
1 AAAA
12186585 ATATTAAACA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
10 8 0.27
11 13 0.43
12 9 0.30
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:12186612 original size:3 final size:3
Alignment explanation
Indices: 12186604--12186639 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
12186594 AATTCTAATC
*
12186604 TAA TAA TAA TAA TAA TAA TAA TAA TAA CAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
12186640 ATAAATAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:12187569 original size:4 final size:4
Alignment explanation
Indices: 12187560--12187725 Score: 53
Period size: 4 Copynumber: 41.5 Consensus size: 4
12187550 AAATATTAAC
* * * *
12187560 AAAT AAAT -AA- AAAT AAAT -AAT AGAT AAATT ATAAT ATAC AAAT AGAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA-T A-AAT AAAT AAAT AAAT
* * * ** *
12187607 AAAT -AAT -AAT AAAT ACAT ATAT ATAAT -AAT ATAT AAAT AGCT AAGT
1 AAAT AAAT AAAT AAAT AAAT AAAT A-AAT AAAT AAAT AAAT AAAT AAAT
* * * * *
12187653 -AAT -AAT AAAG ATAT ATATT AACAT AAAA AAAT AAAT ATATAT TAAT
1 AAAT AAAT AAAT AAAT A-AAT AA-AT AAAT AAAT AAAT A-A-AT AAAT
12187699 AAAT AGTAAT -AAT AAAT AAAT AAAT AA
1 AAAT A--AAT AAAT AAAT AAAT AAAT AA
12187726 TAGATAAGAT
Statistics
Matches: 118, Mismatches: 28, Indels: 32
0.66 0.16 0.18
Matches are distributed among these distances:
3 24 0.20
4 74 0.63
5 13 0.11
6 7 0.06
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (4 bp):
AAAT
Found at i:12187571 original size:42 final size:41
Alignment explanation
Indices: 12187507--12187615 Score: 107
Period size: 42 Copynumber: 2.7 Consensus size: 41
12187497 AAATCAGATA
* * * *
12187507 AAAATATTAATAGATAATTAAAAGA-AAATAATCCGATAAATC
1 AAAATATTAACAAATAAATAAAA-ATAAATAAT-AGATAAATC
*
12187549 AAAATATTAACAAATAAATAAAAATAAATAATAGATAAATT
1 AAAATATTAACAAATAAATAAAAATAAATAATAGATAAATC
* *
12187590 ATAATA-T-ACAAATAGATAAATAATAA
1 AAAATATTAACAAATAAATAAA-AATAA
12187616 TAAATACATA
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 12 0.21
40 6 0.10
41 13 0.22
42 27 0.47
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.27
Consensus pattern (41 bp):
AAAATATTAACAAATAAATAAAAATAAATAATAGATAAATC
Found at i:12187586 original size:7 final size:7
Alignment explanation
Indices: 12187561--12187732 Score: 58
Period size: 7 Copynumber: 24.3 Consensus size: 7
12187551 AATATTAACA
12187561 AATAAAT
1 AATAAAT
12187568 AA-AAAT
1 AATAAAT
12187574 AA-ATAAT
1 AATA-AAT
12187581 AGATAAAT
1 A-ATAAAT
*
12187589 TAT-AAT
1 AATAAAT
*
12187595 ATACAAAT
1 A-ATAAAT
12187603 AGATAAAT
1 A-ATAAAT
12187611 AAT-AAT
1 AATAAAT
*
12187617 AAATACAT
1 -AATAAAT
12187625 ATATATAAT
1 A-ATA-AAT
*
12187634 AATATAT
1 AATAAAT
**
12187641 AAATAGCT
1 -AATAAAT
12187649 AAGT-AAT
1 AA-TAAAT
12187656 AATAAA-
1 AATAAAT
* *
12187662 GATATAT
1 AATAAAT
*
12187669 ATTAACAT
1 AATAA-AT
12187677 AA-AAA-
1 AATAAAT
12187682 AATAAAT
1 AATAAAT
*
12187689 -ATATATT
1 AATA-AAT
12187696 AATAAAT
1 AATAAAT
*
12187703 AGT-AAT
1 AATAAAT
12187709 AATAAAT
1 AATAAAT
12187716 AAATAAAT
1 -AATAAAT
*
12187724 AATAGAT
1 AATAAAT
12187731 AA
1 AA
12187733 GATACAAAGA
Statistics
Matches: 122, Mismatches: 23, Indels: 40
0.66 0.12 0.22
Matches are distributed among these distances:
5 2 0.02
6 30 0.25
7 45 0.37
8 41 0.34
9 4 0.03
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.30
Consensus pattern (7 bp):
AATAAAT
Found at i:12187638 original size:10 final size:10
Alignment explanation
Indices: 12187561--12187732 Score: 81
Period size: 10 Copynumber: 16.5 Consensus size: 10
12187551 AATATTAACA
*
12187561 AATAAATAAA
1 AATAAATAAT
12187571 AATAAATAAT
1 AATAAATAAT
*
12187581 AGATAAATTAT
1 A-ATAAATAAT
12187592 AATATACA-AAT
1 AATA-A-ATAAT
12187603 AGATAAATAAT
1 A-ATAAATAAT
12187614 AATAAATACAT
1 AATAAATA-AT
12187625 ATATATAATAAT
1 A-ATA-AATAAT
*
12187637 ATATAAATAGCT
1 A-ATAAATA-AT
12187649 AAGT-AATAAT
1 AA-TAAATAAT
*
12187659 AA-AGATATAT
1 AATAAATA-AT
*
12187669 ATTAACATAA-
1 AATAA-ATAAT
12187679 AA-AAAT-A-
1 AATAAATAAT
* *
12187686 AATATATATT
1 AATAAATAAT
*
12187696 AATAAATAGT
1 AATAAATAAT
12187706 AAT-AATAAAT
1 AATAAAT-AAT
12187716 AAATAAATAAT
1 -AATAAATAAT
12187727 AGATAA
1 A-ATAA
12187733 GATACAAAGA
Statistics
Matches: 127, Mismatches: 14, Indels: 41
0.70 0.08 0.23
Matches are distributed among these distances:
7 3 0.02
8 5 0.04
9 8 0.06
10 42 0.33
11 42 0.33
12 23 0.18
13 4 0.03
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.30
Consensus pattern (10 bp):
AATAAATAAT
Found at i:12187656 original size:42 final size:42
Alignment explanation
Indices: 12187590--12187670 Score: 117
Period size: 42 Copynumber: 1.9 Consensus size: 42
12187580 TAGATAAATT
*
12187590 ATAATATACAAATAGATAAATAATAATAAATACATATATATA
1 ATAATATACAAATAGATAAATAATAATAAAGACATATATATA
* * * *
12187632 ATAATATATAAATAGCTAAGTAATAATAAAGATATATAT
1 ATAATATACAAATAGATAAATAATAATAAAGACATATAT
12187671 TAACATAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.59, C:0.04, G:0.05, T:0.32
Consensus pattern (42 bp):
ATAATATACAAATAGATAAATAATAATAAAGACATATATATA
Found at i:12187658 original size:22 final size:20
Alignment explanation
Indices: 12187590--12187659 Score: 61
Period size: 22 Copynumber: 3.3 Consensus size: 20
12187580 TAGATAAATT
*
12187590 ATAATATACAAATAGATAAATA
1 ATAATATATAAATAG-T-AATA
* *
12187612 ATAATAAATACATA-TATATA
1 ATAATATATAAATAGTA-ATA
12187632 ATAATATATAAATAGCTAAGTA
1 ATAATATATAAATAG-TAA-TA
12187654 ATAATA
1 ATAATA
12187660 AAGATATATA
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
19 1 0.03
20 16 0.41
21 1 0.03
22 21 0.54
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.31
Consensus pattern (20 bp):
ATAATATATAAATAGTAATA
Found at i:12187772 original size:6 final size:6
Alignment explanation
Indices: 12187746--12187799 Score: 56
Period size: 6 Copynumber: 8.7 Consensus size: 6
12187736 ACAAAGAAGA
* *
12187746 AAAAAT ATAAAAT ATAAAAT AAAAAT AAAAAT ACAAAA- AAAAAC AAAAAC
1 AAAAAT A-AAAAT A-AAAAT AAAAAT AAAAAT A-AAAAT AAAAAT AAAAAT
12187796 AAAA
1 AAAA
12187800 TGGGCCTACC
Statistics
Matches: 45, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
5 4 0.09
6 24 0.53
7 17 0.38
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.13
Consensus pattern (6 bp):
AAAAAT
Found at i:12187776 original size:19 final size:18
Alignment explanation
Indices: 12187745--12187794 Score: 64
Period size: 19 Copynumber: 2.7 Consensus size: 18
12187735 TACAAAGAAG
*
12187745 AAAAAATATAAAATATAAA
1 AAAAAATA-AAAATACAAA
12187764 ATAAAAATAAAAATACAAA
1 A-AAAAATAAAAATACAAA
*
12187783 AAAAAACAAAAA
1 AAAAAATAAAAA
12187795 CAAAATGGGC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 10 0.36
19 11 0.39
20 7 0.25
ACGTcount: A:0.82, C:0.04, G:0.00, T:0.14
Consensus pattern (18 bp):
AAAAAATAAAAATACAAA
Found at i:12193519 original size:326 final size:326
Alignment explanation
Indices: 12192922--12193553 Score: 1012
Period size: 326 Copynumber: 1.9 Consensus size: 326
12192912 CAAGCATAAC
* *
12192922 TTTATTCATGCCTGTTTTTCTCTCATACAATGTTGCCAATTTCTTTCAAACAATGTGGGCATCTC
1 TTTATTCATGCCTGTTTTCCTCTCATACAATGCTGCCAATTTCTTTCAAACAATGTGGGCATCTC
* * * * *
12192987 TCTTTTACGCTACATGAAAGAACACACTGATATCAACCTATTTTCTAATTGTGGCTAGTGTCTTT
66 TCTTTTACACTACACGAAAGAACACACTGATATCAACCCATTTTCTAATTGTGGCCAGGGTCTTT
* *
12193052 CTGCCTAGTTTCTTTCAGCTTTTATCTTTTGTATCTATTGGTTTAGTTGAATTACCCAATATTGC
131 CTGCCTAGTTTCTTTCAGCTTTTATCTTTTGTATCTATTGGTTTAGTTGAATCACCCAATATTGA
* * * *
12193117 CTCATACAAATCTTTGCAGTGTAAATGATATTCCATCATAAGCTTCCAAATTGAATAATTTGATA
196 CTCATACAAATCTTTACAGTATAAATAATATTCCATCATAAGCTTCCAAATTGAATAATTTGACA
* *
12193182 TTATTAATTTTATCATAGAACTTGTATCACCCTCTATAATCTCAAACAAAATTTGATACTATCAA
261 CTATCAATTTTATCATAGAACTTGTATCACCCTCTATAATCTCAAACAAAATTTGATACTATCAA
12193247 T
326 T
* * * *
12193248 TTTATTCATGCCTGTTTTCCTCTCATACAATGCTGTCAATTTTTTTCACACAATGTGGGCATCTG
1 TTTATTCATGCCTGTTTTCCTCTCATACAATGCTGCCAATTTCTTTCAAACAATGTGGGCATCTC
* * *
12193313 TCTTTTGCACTACACGATAGAACACACTGATATCAACCCATTTTCTGATTGTGGCCAGGGTCTTT
66 TCTTTTACACTACACGAAAGAACACACTGATATCAACCCATTTTCTAATTGTGGCCAGGGTCTTT
*
12193378 CTGCCTAGTTTCTTTCAGCTTTTATCTTTTGTATCTATTGGTTTAGTTGAATCATCCAATATTGA
131 CTGCCTAGTTTCTTTCAGCTTTTATCTTTTGTATCTATTGGTTTAGTTGAATCACCCAATATTGA
* * * * *
12193443 CTCATACAAATTTTTATAGTATAAATAATCTTCTATCATAAGCTTTCAAATTGAATAATTTGACA
196 CTCATACAAATCTTTACAGTATAAATAATATTCCATCATAAGCTTCCAAATTGAATAATTTGACA
12193508 CTATCAATTTTATCATAGAACTTGTATCACCCTCTATAATCTCAAA
261 CTATCAATTTTATCATAGAACTTGTATCACCCTCTATAATCTCAAA
12193554 TAGAATTTAC
Statistics
Matches: 278, Mismatches: 28, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
326 278 1.00
ACGTcount: A:0.28, C:0.20, G:0.11, T:0.41
Consensus pattern (326 bp):
TTTATTCATGCCTGTTTTCCTCTCATACAATGCTGCCAATTTCTTTCAAACAATGTGGGCATCTC
TCTTTTACACTACACGAAAGAACACACTGATATCAACCCATTTTCTAATTGTGGCCAGGGTCTTT
CTGCCTAGTTTCTTTCAGCTTTTATCTTTTGTATCTATTGGTTTAGTTGAATCACCCAATATTGA
CTCATACAAATCTTTACAGTATAAATAATATTCCATCATAAGCTTCCAAATTGAATAATTTGACA
CTATCAATTTTATCATAGAACTTGTATCACCCTCTATAATCTCAAACAAAATTTGATACTATCAA
T
Found at i:12196148 original size:29 final size:29
Alignment explanation
Indices: 12196115--12196172 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
12196105 TCACAGGTGA
12196115 CCTCCCTCTTTCTACAAAATTCAACTTTG
1 CCTCCCTCTTTCTACAAAATTCAACTTTG
12196144 CCTCCCTCTTTCTACAAAATTCAACTTTG
1 CCTCCCTCTTTCTACAAAATTCAACTTTG
12196173 TATCAATCAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.34, G:0.03, T:0.38
Consensus pattern (29 bp):
CCTCCCTCTTTCTACAAAATTCAACTTTG
Found at i:12197063 original size:15 final size:14
Alignment explanation
Indices: 12197039--12197069 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
12197029 TTTTTATTGG
12197039 AAAAAAAAAAACAA
1 AAAAAAAAAAACAA
12197053 AAAAAACAAAAACAA
1 AAAAAA-AAAAACAA
12197068 AA
1 AA
12197070 TAGCTATGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAACAA
Found at i:12200683 original size:153 final size:153
Alignment explanation
Indices: 12200405--12200686 Score: 456
Period size: 153 Copynumber: 1.8 Consensus size: 153
12200395 GAGTATGAAC
* * * * *
12200405 TCTAAAAGTATTAAAAGTGAATAACATAAATACTCGTATAAATTTTAAGAAGTAACAAATTTACC
1 TCTAAAAGTATTAAAAATGAATAACATAAATACCCGTATAAATTTTAAAAAATAACAAATTTACA
*
12200470 TTTAAATTTCTAGCATTTTTTATTTATTTAATAAAGATTATTTGTCATTAAATAAATAGCTTTTA
66 TTTAAATTTCTAGCATTATTTATTTATTTAATAAAGATTATTTGTCATTAAATAAATAGCTTTTA
12200535 TTAGTTAGTTATTTAAATTTAAA
131 TTAGTTAGTTATTTAAATTTAAA
* * * *
12200558 TCTAAAAGTGTTAAAAATGAATAACATAAATGCCCTTATAAATTTTAAAAAATAACAAATTTATA
1 TCTAAAAGTATTAAAAATGAATAACATAAATACCCGTATAAATTTTAAAAAATAACAAATTTACA
* *
12200623 TTTCAATTTCTAGCATTATTTATTTATTTAATAAAGATTATTTGTCATTAAATATATAGCTTTT
66 TTTAAATTTCTAGCATTATTTATTTATTTAATAAAGATTATTTGTCATTAAATAAATAGCTTTT
12200687 TATTTATTTA
Statistics
Matches: 117, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
153 117 1.00
ACGTcount: A:0.42, C:0.08, G:0.07, T:0.43
Consensus pattern (153 bp):
TCTAAAAGTATTAAAAATGAATAACATAAATACCCGTATAAATTTTAAAAAATAACAAATTTACA
TTTAAATTTCTAGCATTATTTATTTATTTAATAAAGATTATTTGTCATTAAATAAATAGCTTTTA
TTAGTTAGTTATTTAAATTTAAA
Found at i:12203174 original size:22 final size:22
Alignment explanation
Indices: 12203149--12203196 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
12203139 AATTTAGACA
*
12203149 AAATCAAT-ATTAACTTTATATT
1 AAATCAATGA-TAACTGTATATT
*
12203171 AAATTAATGATAACTGTATATT
1 AAATCAATGATAACTGTATATT
12203193 AAAT
1 AAAT
12203197 TATGGATAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 22 0.96
23 1 0.04
ACGTcount: A:0.48, C:0.06, G:0.04, T:0.42
Consensus pattern (22 bp):
AAATCAATGATAACTGTATATT
Found at i:12203197 original size:22 final size:22
Alignment explanation
Indices: 12203159--12203206 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
12203149 AAATCAATAT
*
12203159 TAACTTTATATTAAATTAAT-GA
1 TAACTGTATATTAAATT-ATGGA
12203181 TAACTGTATATTAAATTATGGA
1 TAACTGTATATTAAATTATGGA
12203203 TAAC
1 TAAC
12203207 CTAATAGTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 2 0.08
22 22 0.92
ACGTcount: A:0.44, C:0.06, G:0.08, T:0.42
Consensus pattern (22 bp):
TAACTGTATATTAAATTATGGA
Found at i:12203293 original size:22 final size:22
Alignment explanation
Indices: 12203268--12203322 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
12203258 TATGCCAGTG
12203268 ATAACATAATAATAAA-TACATA
1 ATAACATAATAATAAATTACA-A
* * *
12203290 ATAATATAGTCATAAATTACAA
1 ATAACATAATAATAAATTACAA
*
12203312 ATAACTTAATA
1 ATAACATAATA
12203323 GTATATCATT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
22 21 0.84
23 4 0.16
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.31
Consensus pattern (22 bp):
ATAACATAATAATAAATTACAA
Found at i:12203421 original size:22 final size:21
Alignment explanation
Indices: 12203376--12203452 Score: 86
Period size: 22 Copynumber: 3.6 Consensus size: 21
12203366 GTTTAGTAAG
*
12203376 GATAATTTAATA-AAAATAAGT
1 GATAATTTAATAGTAAATAA-T
12203397 GATAATTTAATAGTAAATTAAT
1 GATAATTTAATAGTAAA-TAAT
*
12203419 GATAACTTAATAGTAAATAA-
1 GATAATTTAATAGTAAATAAT
12203439 GATTCAATTTAATA
1 GA-T-AATTTAATA
12203453 CTTCTTCCAT
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
20 2 0.04
21 16 0.33
22 28 0.57
23 3 0.06
ACGTcount: A:0.52, C:0.03, G:0.09, T:0.36
Consensus pattern (21 bp):
GATAATTTAATAGTAAATAAT
Found at i:12211025 original size:7 final size:7
Alignment explanation
Indices: 12210993--12211017 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
12210983 TTTATTTGTA
12210993 TTTTATT
1 TTTTATT
12211000 TTTTATT
1 TTTTATT
12211007 TTTTATT
1 TTTTATT
12211014 TTTT
1 TTTT
12211018 TCTTTTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTATT
Found at i:12216600 original size:1 final size:1
Alignment explanation
Indices: 12216594--12216664 Score: 79
Period size: 1 Copynumber: 71.0 Consensus size: 1
12216584 TGGGTGAAAG
* * * * * *
12216594 AAAAAAAAAAAAAAAAAAAAAGAAAGAAAAAAAGAAAAAAAAGAAAAAAGAAAAAAGAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
12216659 AGAAAA
1 AAAAAA
12216665 TGGAAAGAAG
Statistics
Matches: 56, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 56 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (1 bp):
A
Found at i:12216670 original size:24 final size:23
Alignment explanation
Indices: 12216590--12216680 Score: 89
Period size: 24 Copynumber: 4.0 Consensus size: 23
12216580 ATAATGGGTG
* *
12216590 AAAGAAAA-AAAAAAAAAAAAAA
1 AAAGAAAAGGAAAAAAGAAAAAA
*
12216612 AAAG-AAAGAAAAAAAG-AAAAA
1 AAAGAAAAGGAAAAAAGAAAAAA
*
12216633 AAAGAAAAAAGAAAAAAGAAAAAA
1 AAAG-AAAAGGAAAAAAGAAAAAA
* *
12216657 AAAGAAAATGGAAAGAAGAGAAAA
1 AAAGAAAA-GGAAAAAAGAAAAAA
12216681 TGGAGACTCA
Statistics
Matches: 58, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
21 12 0.21
22 11 0.19
23 14 0.24
24 21 0.36
ACGTcount: A:0.85, C:0.00, G:0.14, T:0.01
Consensus pattern (23 bp):
AAAGAAAAGGAAAAAAGAAAAAA
Found at i:12217367 original size:48 final size:48
Alignment explanation
Indices: 12217313--12217405 Score: 114
Period size: 48 Copynumber: 1.9 Consensus size: 48
12217303 ATGGGACAAT
*
12217313 GGATGAAACTGGTGCTGAAAAGCCCATGAACAATGATCAAGTGATGAA
1 GGATGAAACTGGTACTGAAAAGCCCATGAACAATGATCAAGTGATGAA
* * * ** * *
12217361 GGATGAAATTTGTACTGAGAAGCTTATGAGCGATGATCAAGTGAT
1 GGATGAAACTGGTACTGAAAAGCCCATGAACAATGATCAAGTGAT
12217406 AAAAGATAAA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 37 1.00
ACGTcount: A:0.37, C:0.12, G:0.28, T:0.24
Consensus pattern (48 bp):
GGATGAAACTGGTACTGAAAAGCCCATGAACAATGATCAAGTGATGAA
Found at i:12217744 original size:21 final size:21
Alignment explanation
Indices: 12217727--12217796 Score: 124
Period size: 21 Copynumber: 3.3 Consensus size: 21
12217717 TTGATGAGAG
12217727 TCTTTGAATTTCAAATGAAAA
1 TCTTTGAATTTCAAATGAAAA
12217748 TCTTTGAATTTCAAATGAAAA
1 TCTTTGAATTTCAAATGAAAA
12217769 TCTTTGAATTTCAAA-GAAAA
1 TCTTTGAATTTCAAATGAAAA
12217789 GTCTTTGA
1 -TCTTTGA
12217797 GTTTTAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
20 5 0.10
21 43 0.90
ACGTcount: A:0.40, C:0.10, G:0.11, T:0.39
Consensus pattern (21 bp):
TCTTTGAATTTCAAATGAAAA
Found at i:12218260 original size:42 final size:42
Alignment explanation
Indices: 12218160--12218388 Score: 275
Period size: 42 Copynumber: 5.5 Consensus size: 42
12218150 GTCAAAGAGT
* * *
12218160 AATTTATTTTTCCAAAGTTATGTTCCCTCTATTCA-AAGAGC
1 AATTTATTTTTCCAAAGTCATGTTGCCTCTATTCAGAGGAGC
* **
12218201 CATTTATTTTTCCAAAGTTTTGTTGCCTCTATTCAGAGGAG-
1 AATTTATTTTTCCAAAGTCATGTTGCCTCTATTCAGAGGAGC
*
12218242 ACATTTATTTTTCCAAAGTCATGTTGCCTCTATTCAAAGGAGC
1 A-ATTTATTTTTCCAAAGTCATGTTGCCTCTATTCAGAGGAGC
* *
12218285 AATTTATTTTTCTAAAGTCGTGTTGCCTCTATTCAGAGGAGC
1 AATTTATTTTTCCAAAGTCATGTTGCCTCTATTCAGAGGAGC
* * * * * * *
12218327 AATTTATTTTTTCAAAATCATGATGCCTTTACTCAAAAGAGC
1 AATTTATTTTTCCAAAGTCATGTTGCCTCTATTCAGAGGAGC
*
12218369 AATTTATTTTT-CGAAGTCAT
1 AATTTATTTTTCCAAAGTCAT
12218389 TGAGCCTCTG
Statistics
Matches: 163, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
41 39 0.24
42 123 0.75
43 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (42 bp):
AATTTATTTTTCCAAAGTCATGTTGCCTCTATTCAGAGGAGC
Found at i:12218323 original size:84 final size:83
Alignment explanation
Indices: 12218160--12218380 Score: 309
Period size: 84 Copynumber: 2.6 Consensus size: 83
12218150 GTCAAAGAGT
* * * **
12218160 AATTTATTTTTCCAAAGTTATGTTCCCTCTATTCAAAGAGCCATTTATTTTTCCAAAGTTTTGTT
1 AATTTATTTTTCCAAAGTCATGTTGCCTCTATTCAAAGAGCAATTTATTTTTCCAAAGTCGTGTT
12218225 GCCTCTATTCAGAGGAG-
66 GCCTCTATTCAGAGGAGC
*
12218242 ACATTTATTTTTCCAAAGTCATGTTGCCTCTATTCAAAGGAGCAATTTATTTTTCTAAAGTCGTG
1 A-ATTTATTTTTCCAAAGTCATGTTGCCTCTATTCAAA-GAGCAATTTATTTTTCCAAAGTCGTG
12218307 TTGCCTCTATTCAGAGGAGC
64 TTGCCTCTATTCAGAGGAGC
* * * * *
12218327 AATTTATTTTTTCAAAATCATGATGCCTTTACTCAAAAGAGCAATTTATTTTTC
1 AATTTATTTTTCCAAAGTCATGTTGCCTCTATTC-AAAGAGCAATTTATTTTTC
12218381 GAAGTCATTG
Statistics
Matches: 124, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
82 1 0.01
83 34 0.27
84 85 0.69
85 4 0.03
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.42
Consensus pattern (83 bp):
AATTTATTTTTCCAAAGTCATGTTGCCTCTATTCAAAGAGCAATTTATTTTTCCAAAGTCGTGTT
GCCTCTATTCAGAGGAGC
Found at i:12218691 original size:13 final size:12
Alignment explanation
Indices: 12218672--12218711 Score: 53
Period size: 13 Copynumber: 3.2 Consensus size: 12
12218662 GTTTTGAATT
*
12218672 TTATTTTTATTA
1 TTATTTTTTTTA
12218684 TTACTTTTTTTTA
1 TTA-TTTTTTTTA
12218697 TATATTTTTTTTA
1 T-TATTTTTTTTA
12218710 TT
1 TT
12218712 CTAGAAGATC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
12 4 0.16
13 19 0.76
14 2 0.08
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.78
Consensus pattern (12 bp):
TTATTTTTTTTA
Found at i:12219563 original size:25 final size:24
Alignment explanation
Indices: 12219535--12219581 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
12219525 TTAATTATCC
12219535 AATGATGAAATTTATAGAAATTTCA
1 AATGAT-AAATTTATAGAAATTTCA
* * *
12219560 AATGGTAAATTTCTATAAATTT
1 AATGATAAATTTATAGAAATTT
12219582 TTAGGTAAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.40
Consensus pattern (24 bp):
AATGATAAATTTATAGAAATTTCA
Found at i:12229146 original size:24 final size:24
Alignment explanation
Indices: 12229119--12229168 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
12229109 GTTGCTGAGG
12229119 TTTGTTCTATAAGAGACAAGCTGC
1 TTTGTTCTATAAGAGACAAGCTGC
*
12229143 TTTGTTCTATAAGAGACAAGTTGC
1 TTTGTTCTATAAGAGACAAGCTGC
12229167 TT
1 TT
12229169 CCACCTCGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38
Consensus pattern (24 bp):
TTTGTTCTATAAGAGACAAGCTGC
Found at i:12236773 original size:1 final size:1
Alignment explanation
Indices: 12236767--12236836 Score: 77
Period size: 1 Copynumber: 70.0 Consensus size: 1
12236757 TGGGTGAAAG
* * * * * *
12236767 AAAAAAAAAGAAAAAAAAAGAAAGAAAAAAAGAAAAAAAAGAAAAAAGAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
12236832 GAAAA
1 AAAAA
12236837 TGGAAAGAAG
Statistics
Matches: 55, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 55 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (1 bp):
A
Found at i:12236778 original size:10 final size:10
Alignment explanation
Indices: 12236763--12236836 Score: 93
Period size: 9 Copynumber: 7.8 Consensus size: 10
12236753 ATAATGGGTG
12236763 AAAGAAAAAA
1 AAAGAAAAAA
12236773 AAAGAAAAAA
1 AAAGAAAAAA
*
12236783 AAAGAAAGAA
1 AAAGAAAAAA
*
12236793 AAA-AAGAAA
1 AAAGAAAAAA
*
12236802 AAA-AAGAAA
1 AAAGAAAAAA
12236811 AAAG-AAAAA
1 AAAGAAAAAA
12236820 AAA-AAAAAA
1 AAAGAAAAAA
12236829 AAAGAAAA
1 AAAGAAAA
12236837 TGGAAAGAAG
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
9 31 0.54
10 26 0.46
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (10 bp):
AAAGAAAAAA
Found at i:12236789 original size:24 final size:23
Alignment explanation
Indices: 12236762--12236835 Score: 107
Period size: 24 Copynumber: 3.2 Consensus size: 23
12236752 AATAATGGGT
12236762 GAAAGAAAAAAAAAGAAAAAAAAA
1 GAAAGAAAAAAAAA-AAAAAAAAA
12236786 GAAAGAAAAAAAGAAAAAAAAGAAA
1 GAAAGAAAAAAA-AAAAAAAA-AAA
12236811 -AAAG-AAAAAAAAAAAAAAAAA
1 GAAAGAAAAAAAAAAAAAAAAAA
12236832 GAAA
1 GAAA
12236836 ATGGAAAGAA
Statistics
Matches: 47, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
21 3 0.06
22 11 0.23
23 6 0.13
24 22 0.47
25 5 0.11
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (23 bp):
GAAAGAAAAAAAAAAAAAAAAAA
Found at i:12236836 original size:24 final size:24
Alignment explanation
Indices: 12236763--12236836 Score: 98
Period size: 25 Copynumber: 3.1 Consensus size: 24
12236753 ATAATGGGTG
*
12236763 AAAGAAAAAAAAAGAAAAAAAA-AG
1 AAAGAAAAAAAAA-AAAAAAAAGAA
*
12236787 AAAG-AAAAAAAGAAAAAAAAGAAA
1 AAAGAAAAAAAAAAAAAAAAAG-AA
12236811 AAAGAAAAAAAAAAAAAAAAAGAA
1 AAAGAAAAAAAAAAAAAAAAAGAA
12236835 AA
1 AA
12236837 TGGAAAGAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
22 8 0.18
23 7 0.16
24 13 0.30
25 16 0.36
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (24 bp):
AAAGAAAAAAAAAAAAAAAAAGAA
Found at i:12236851 original size:41 final size:37
Alignment explanation
Indices: 12236762--12236852 Score: 103
Period size: 38 Copynumber: 2.4 Consensus size: 37
12236752 AATAATGGGT
* *
12236762 GAAAGAAA-AAAAAAGAAAAAAAAAGAAAGAAAAAAA
1 GAAAGAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAA
*
12236798 GAAAAAAAAGAAAAAAGAAAAAAAAAAAAAAAAAGAAAA
1 G-AAAGAAAGAAAAAAGAAAAAAAAAAAAAAAAA-AAAA
12236837 TGGAAAGAAGAGAAAA
1 --GAAAGAA-AGAAAA
12236853 TGGAGACTCA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
36 1 0.02
37 6 0.13
38 22 0.49
39 4 0.09
40 5 0.11
41 7 0.16
ACGTcount: A:0.84, C:0.00, G:0.15, T:0.01
Consensus pattern (37 bp):
GAAAGAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAA
Found at i:12236852 original size:25 final size:22
Alignment explanation
Indices: 12236769--12236836 Score: 90
Period size: 22 Copynumber: 3.2 Consensus size: 22
12236759 GGTGAAAGAA
12236769 AAAAAAAGAAAAAAAA-AGAAAG
1 AAAAAAAGAAAAAAAAGA-AAAG
12236791 AAAAAAAGAAAAAAAAGAAAA-
1 AAAAAAAGAAAAAAAAGAAAAG
12236812 AAGAAAAA-AAAAAAAA-AAAAG
1 AA-AAAAAGAAAAAAAAGAAAAG
12236833 AAAA
1 AAAA
12236837 TGGAAAGAAG
Statistics
Matches: 43, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
20 6 0.14
21 12 0.28
22 24 0.56
23 1 0.02
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (22 bp):
AAAAAAAGAAAAAAAAGAAAAG
Found at i:12237915 original size:21 final size:21
Alignment explanation
Indices: 12237898--12237967 Score: 124
Period size: 21 Copynumber: 3.3 Consensus size: 21
12237888 TTGATGAGAG
12237898 TCTTTGAATTTCAAATGAAAA
1 TCTTTGAATTTCAAATGAAAA
12237919 TCTTTGAATTTCAAATGAAAA
1 TCTTTGAATTTCAAATGAAAA
12237940 TCTTTGAATTTCAAA-GAAAA
1 TCTTTGAATTTCAAATGAAAA
12237960 GTCTTTGA
1 -TCTTTGA
12237968 GTTTTAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
20 5 0.10
21 43 0.90
ACGTcount: A:0.40, C:0.10, G:0.11, T:0.39
Consensus pattern (21 bp):
TCTTTGAATTTCAAATGAAAA
Found at i:12238418 original size:42 final size:42
Alignment explanation
Indices: 12238331--12238558 Score: 266
Period size: 42 Copynumber: 5.5 Consensus size: 42
12238321 GTCAAAGAGT
* * *
12238331 AATTT-TTTTTCCAAAGTTATGTTCCCTCTATTCA-AAGAGC
1 AATTTATTTTTCCAAAGTCATGTTGCCTCTATTCAGAGGAGC
* **
12238371 CATTTATTTTTCCAAAGTTTTGTTGCCTCTATTCAGAGGAG-
1 AATTTATTTTTCCAAAGTCATGTTGCCTCTATTCAGAGGAGC
*
12238412 ACATTTATTTTTCCAAAGTCATGTTGCCTCTATTCAAAGGAGC
1 A-ATTTATTTTTCCAAAGTCATGTTGCCTCTATTCAGAGGAGC
* *
12238455 AATTTATTTTTCTAAAGTCGTGTTGCCTCTATTCAGAGGAGC
1 AATTTATTTTTCCAAAGTCATGTTGCCTCTATTCAGAGGAGC
* * * * * * *
12238497 AATTTATTTTTTCAAAATCATGATGCCTTTACTCAAAAGAGC
1 AATTTATTTTTCCAAAGTCATGTTGCCTCTATTCAGAGGAGC
*
12238539 AATTTATTTTT-CGAAGTCAT
1 AATTTATTTTTCCAAAGTCAT
12238559 TGAGCCTCTG
Statistics
Matches: 162, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
40 4 0.02
41 34 0.21
42 123 0.76
43 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.41
Consensus pattern (42 bp):
AATTTATTTTTCCAAAGTCATGTTGCCTCTATTCAGAGGAGC
Found at i:12238483 original size:84 final size:83
Alignment explanation
Indices: 12238331--12238550 Score: 300
Period size: 84 Copynumber: 2.6 Consensus size: 83
12238321 GTCAAAGAGT
* * * **
12238331 AATTT-TTTTTCCAAAGTTATGTTCCCTCTATTCAAAGAGCCATTTATTTTTCCAAAGTTTTGTT
1 AATTTATTTTTCCAAAGTCATGTTGCCTCTATTCAAAGAGCAATTTATTTTTCCAAAGTCGTGTT
12238395 GCCTCTATTCAGAGGAG-
66 GCCTCTATTCAGAGGAGC
*
12238412 ACATTTATTTTTCCAAAGTCATGTTGCCTCTATTCAAAGGAGCAATTTATTTTTCTAAAGTCGTG
1 A-ATTTATTTTTCCAAAGTCATGTTGCCTCTATTCAAA-GAGCAATTTATTTTTCCAAAGTCGTG
12238477 TTGCCTCTATTCAGAGGAGC
64 TTGCCTCTATTCAGAGGAGC
* * * * *
12238497 AATTTATTTTTTCAAAATCATGATGCCTTTACTCAAAAGAGCAATTTATTTTTC
1 AATTTATTTTTCCAAAGTCATGTTGCCTCTATTC-AAAGAGCAATTTATTTTTC
12238551 GAAGTCATTG
Statistics
Matches: 123, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
81 1 0.01
82 4 0.03
83 29 0.24
84 85 0.69
85 4 0.03
ACGTcount: A:0.27, C:0.18, G:0.13, T:0.42
Consensus pattern (83 bp):
AATTTATTTTTCCAAAGTCATGTTGCCTCTATTCAAAGAGCAATTTATTTTTCCAAAGTCGTGTT
GCCTCTATTCAGAGGAGC
Found at i:12239713 original size:25 final size:24
Alignment explanation
Indices: 12239685--12239731 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
12239675 TTAATTATCC
12239685 AATGATGAAATTTATAGAAATTTCA
1 AATGAT-AAATTTATAGAAATTTCA
* * *
12239710 AATGGTAAATTTCTATAAATTT
1 AATGATAAATTTATAGAAATTT
12239732 TTAGGTAAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.40
Consensus pattern (24 bp):
AATGATAAATTTATAGAAATTTCA
Found at i:12239845 original size:12 final size:12
Alignment explanation
Indices: 12239819--12239855 Score: 51
Period size: 13 Copynumber: 3.2 Consensus size: 12
12239809 TTTATTTTTC
12239819 AACAAAAAATAAT
1 AACAAAAAAT-AT
12239832 AACAAAAAATAT
1 AACAAAAAATAT
12239844 -A-AAAAAATAT
1 AACAAAAAATAT
12239854 AA
1 AA
12239856 AATGAGAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 9 0.39
11 2 0.09
12 2 0.09
13 10 0.43
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.16
Consensus pattern (12 bp):
AACAAAAAATAT
Found at i:12248984 original size:24 final size:24
Alignment explanation
Indices: 12248956--12249007 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
12248946 TTGTTGCTGA
12248956 GCTTTGTTCTATAAGAGACAAGCT
1 GCTTTGTTCTATAAGAGACAAGCT
*
12248980 GCTTTGTTCTATAAGAGACAAGTT
1 GCTTTGTTCTATAAGAGACAAGCT
12249004 GCTT
1 GCTT
12249008 CCACCTCGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.37
Consensus pattern (24 bp):
GCTTTGTTCTATAAGAGACAAGCT
Found at i:12255863 original size:49 final size:48
Alignment explanation
Indices: 12255799--12255939 Score: 193
Period size: 49 Copynumber: 3.0 Consensus size: 48
12255789 TAAATTATTT
12255799 TATATTATTATTTTAAAGTATAGTATATGAATAATATATATTTTTAAA
1 TATATTATTATTTTAAAGTATAGTATATGAATAATATATATTTTTAAA
* * * *
12255847 CTATATTATTATTTTAAAGTATAGTATA-GTAT-ATGA-ATA-ATATATA
1 -TATATTATTATTTTAAAGTATAGTATATGAATAAT-ATATATTTTTAAA
12255893 T-TATTATTATTTTAAAGTATAGTATATGAATAATATATATTTTTAAA
1 TATATTATTATTTTAAAGTATAGTATATGAATAATATATATTTTTAAA
12255940 ATTTACAAAT
Statistics
Matches: 79, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
44 25 0.32
45 5 0.06
46 9 0.11
47 9 0.11
48 4 0.05
49 27 0.34
ACGTcount: A:0.43, C:0.01, G:0.07, T:0.49
Consensus pattern (48 bp):
TATATTATTATTTTAAAGTATAGTATATGAATAATATATATTTTTAAA
Found at i:12255868 original size:44 final size:47
Alignment explanation
Indices: 12255801--12255939 Score: 135
Period size: 44 Copynumber: 2.9 Consensus size: 47
12255791 AATTATTTTA
12255801 TATTATTATTTTAAAGTATAGTATATGAATAATATATATTTTTAAACTA-
1 TATTATTATTTT-AAG-ATAGTATATGAATAATATATATTTTTAAA-TAT
* * * ** *
12255850 TATTATTATTTT-A-A-AGTATA-GTATAGTATATGAATAATATATAT
1 TATTATTATTTTAAGATAGTATATGAATAATATAT-ATTTTTAAATAT
12255894 TATTATTATTTTAAAGTATAGTATATGAATAATATATATTTTTAAA
1 TATTATTATTTT-AAG-ATAGTATATGAATAATATATATTTTTAAA
12255940 ATTTACAAAT
Statistics
Matches: 70, Mismatches: 12, Indels: 16
0.71 0.12 0.16
Matches are distributed among these distances:
43 11 0.16
44 23 0.33
45 1 0.01
46 1 0.01
47 1 0.01
48 1 0.01
49 23 0.33
50 9 0.13
ACGTcount: A:0.43, C:0.01, G:0.07, T:0.49
Consensus pattern (47 bp):
TATTATTATTTTAAGATAGTATATGAATAATATATATTTTTAAATAT
Found at i:12255890 original size:21 final size:21
Alignment explanation
Indices: 12255866--12255929 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
12255856 TATTTTAAAG
12255866 TATAGTATAGTATATGAATAA
1 TATAGTATAGTATATGAATAA
* **
12255887 TATA-TAT--TATTAT-TATTT
1 TATAGTATAGTA-TATGAATAA
*
12255905 TAAAGTATAGTATATGAATAA
1 TATAGTATAGTATATGAATAA
12255926 TATA
1 TATA
12255930 TATTTTTAAA
Statistics
Matches: 30, Mismatches: 8, Indels: 10
0.62 0.17 0.21
Matches are distributed among these distances:
18 7 0.23
19 6 0.20
20 6 0.20
21 11 0.37
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.45
Consensus pattern (21 bp):
TATAGTATAGTATATGAATAA
Found at i:12255891 original size:39 final size:40
Alignment explanation
Indices: 12255848--12255930 Score: 116
Period size: 39 Copynumber: 2.1 Consensus size: 40
12255838 ATTTTTAAAC
*
12255848 TATATTATTATT-TTAAAGTATAGTATAGTATATGAATAA
1 TATATTATTATTATTAAAGTAAAGTATAGTATATGAATAA
***
12255887 TATA-TATTATTATTATTTTAAAGTATAGTATATGAATAA
1 TATATTATTATTATTAAAGTAAAGTATAGTATATGAATAA
12255926 TATAT
1 TATAT
12255931 ATTTTTAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
38 7 0.18
39 31 0.82
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.48
Consensus pattern (40 bp):
TATATTATTATTATTAAAGTAAAGTATAGTATATGAATAA
Found at i:12258535 original size:32 final size:32
Alignment explanation
Indices: 12258498--12258560 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
12258488 TTTAAGTCAC
12258498 GATTGAAAATAAATCATTATAAAAAATCAAAT
1 GATTGAAAATAAATCATTATAAAAAATCAAAT
* *
12258530 GATTGAATATAAATCATTATAAAATATCAAA
1 GATTGAAAATAAATCATTATAAAAAATCAAA
12258561 GTACTATTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.30
Consensus pattern (32 bp):
GATTGAAAATAAATCATTATAAAAAATCAAAT
Found at i:12259845 original size:2 final size:2
Alignment explanation
Indices: 12259838--12259879 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
12259828 CGACCTCATT
*
12259838 TA TA TA TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
12259880 AACAAACCAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:12263840 original size:64 final size:58
Alignment explanation
Indices: 12263634--12263921 Score: 333
Period size: 64 Copynumber: 4.7 Consensus size: 58
12263624 TTTTGTGCAG
*
12263634 GAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTCTTAGAAAAAAACTTATTTTCAA
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAG---AAAACTTATTTTCAA
* * * * * *
12263695 GGAAAATTGATACTTTCAACTTTTCCTAAAAAAAAACCTTTTTTTTTGAAAATTTATTTTTAA
1 GAAAAATTGATACTTTCAACTTTTCCT---CAAAAA--TATTTTTTAGAAAACTTATTTTCAA
**
12263758 GAAAAATTGATACTTTCAACTTTTCCTTGAAAATATTTTTTAGGAAAAAAAAACTTATTTTCAA
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTA-G-----AAAACTTATTTTCAA
* *
12263822 GAAAAATTGATACATTCAACTTTTCCTCAAAAATATTTTTTAGAAAACTTTTTTTCAA
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAACTTATTTTCAA
*
12263880 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATAATTTTTT
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAAT-ATTTTTT
12263922 GGAAGTTTTT
Statistics
Matches: 195, Mismatches: 20, Indels: 26
0.81 0.08 0.11
Matches are distributed among these distances:
58 53 0.27
59 8 0.04
60 4 0.02
61 26 0.13
63 40 0.21
64 57 0.29
66 7 0.04
ACGTcount: A:0.40, C:0.13, G:0.06, T:0.41
Consensus pattern (58 bp):
GAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAACTTATTTTCAA
Found at i:12263943 original size:58 final size:57
Alignment explanation
Indices: 12263636--12263943 Score: 264
Period size: 58 Copynumber: 5.1 Consensus size: 57
12263626 TTGTGCAGGA
* *
12263636 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTCTTAGAAAAAAACTTATTTTCAAG-G
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTT-TTTG----AAACTTTTTTTCAAGAG
* * * *
12263697 AAAATTGATACTTTCAACTTTTCCTAAAAAAAAACCTTTTTTTTTGAAAATTTATTTTTAAGA-
1 AAAATTGATACTTTCAACTTTTCCT---CAAAAA---TATTTTTTGAAACTTT-TTTTCAAGAG
** *
12263760 AAAATTGATACTTTCAACTTTTCCTTGAAAATATTTTTTAGGAAAAAAAAACTTATTTTCAAGA-
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTT--G------AAACTTTTTTTCAAGAG
*
12263824 AAAATTGATACATTCAACTTTTCCTCAAAAATATTTTTTAGAAAACTTTTTTTCAAG-G
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTT-G-AAACTTTTTTTCAAGAG
* * *
12263882 AAAATTGATACTTTCAACTTTTCCTCAAAAATAATTTTTTGGAAGTTTTTTTAAAGAG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAAT-ATTTTTTGAAACTTTTTTTCAAGAG
12263940 AAAA
1 AAAA
12263944 AAAAAATAAA
Statistics
Matches: 207, Mismatches: 21, Indels: 41
0.77 0.08 0.15
Matches are distributed among these distances:
57 19 0.09
58 52 0.25
59 8 0.04
60 4 0.02
61 25 0.12
62 5 0.02
63 33 0.16
64 49 0.24
65 5 0.02
66 3 0.01
67 4 0.02
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.41
Consensus pattern (57 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAACTTTTTTTCAAGAG
Found at i:12263954 original size:5 final size:5
Alignment explanation
Indices: 12263941--12263990 Score: 64
Period size: 5 Copynumber: 9.4 Consensus size: 5
12263931 TTTAAAGAGA
*
12263941 AAAAA AAAAT AAAAT AAAAAT AAAGAT AAAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT -AAAAT AAA-AT -AAAAT AAAAT AAAAT AAAAT
12263989 AA
1 AA
12263991 GAAATACTAA
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
5 29 0.71
6 9 0.22
7 3 0.07
ACGTcount: A:0.82, C:0.00, G:0.02, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:12263954 original size:6 final size:6
Alignment explanation
Indices: 12263940--12264085 Score: 65
Period size: 6 Copynumber: 24.8 Consensus size: 6
12263930 TTTTAAAGAG
*
12263940 AAAAA- AAAAAT -AAAAT AAAAAT AAAGAT AAAAAT -AAAAT -AAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
* * *** ** *
12263984 -AAAAT AAGAAAT ACTAAAT GATTCT -AATCT AATAAAT AAATAAT AATAAT
1 AAAAAT AA-AAAT A-AAAAT AAAAAT AAAAAT AA-AAAT AAA-AAT AAAAAT
* * * * *
12264034 AATAAT AACAAT AATAAT AATAAAT ATAAA- AAAAAT AAAAAG AAAAA-
1 AAAAAT AAAAAT AAAAAT AA-AAAT AAAAAT AAAAAT AAAAAT AAAAAT
12264081 AAAAA
1 AAAAA
12264086 CCTGGGAACG
Statistics
Matches: 113, Mismatches: 18, Indels: 20
0.75 0.12 0.13
Matches are distributed among these distances:
5 38 0.34
6 53 0.47
7 22 0.19
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.21
Consensus pattern (6 bp):
AAAAAT
Found at i:12263975 original size:23 final size:21
Alignment explanation
Indices: 12263940--12263996 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 21
12263930 TTTTAAAGAG
*
12263940 AAAAAAAAAATAAAATAAAAAT
1 AAAATAAAAATAAAAT-AAAAT
12263962 AAAGATAAAAATAAAATAAAAT
1 AAA-ATAAAAATAAAATAAAAT
12263984 AAAATAAGAAATA
1 AAAATAA-AAATA
12263997 CTAAATGATT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 4 0.12
22 16 0.50
23 12 0.38
ACGTcount: A:0.81, C:0.00, G:0.04, T:0.16
Consensus pattern (21 bp):
AAAATAAAAATAAAATAAAAT
Found at i:12263977 original size:28 final size:28
Alignment explanation
Indices: 12263933--12263987 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
12263923 GAAGTTTTTT
12263933 TAAAGAGAAAAAAAAAATAAAATAAAAA
1 TAAAGAGAAAAAAAAAATAAAATAAAAA
* *
12263961 TAAAGATAAAAATAAAATAAAATAAAA
1 TAAAGAGAAAAAAAAAATAAAATAAAA
12263988 TAAGAAATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.15
Consensus pattern (28 bp):
TAAAGAGAAAAAAAAAATAAAATAAAAA
Found at i:12264030 original size:3 final size:3
Alignment explanation
Indices: 12264022--12264056 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
12264012 CTAATAAATA
*
12264022 AAT AAT AAT AAT AAT AAT AAC AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
12264057 ATATAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:12264510 original size:19 final size:19
Alignment explanation
Indices: 12264483--12264522 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
12264473 ACTTGTCCAA
12264483 AAACGTCACCCAAAAATTC
1 AAACGTCACCCAAAAATTC
* * *
12264502 AAACTTCACTCAAAACTTC
1 AAACGTCACCCAAAAATTC
12264521 AA
1 AA
12264523 CCGAAATATG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.47, C:0.30, G:0.03, T:0.20
Consensus pattern (19 bp):
AAACGTCACCCAAAAATTC
Found at i:12264871 original size:20 final size:20
Alignment explanation
Indices: 12264846--12264923 Score: 102
Period size: 20 Copynumber: 3.8 Consensus size: 20
12264836 AGAAAATAAT
12264846 TAGATAAATAAAAATATTAA
1 TAGATAAATAAAAATATTAA
* *
12264866 TAGATAAATAATAATAATAA
1 TAGATAAATAAAAATATTAA
*
12264886 TAGATAAATAATAATATATAAA
1 TAGATAAATAA-AA-ATATTAA
*
12264908 TAGATAAATAATAATA
1 TAGATAAATAAAAATA
12264924 AATATATATT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
20 32 0.64
21 2 0.04
22 16 0.32
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (20 bp):
TAGATAAATAAAAATATTAA
Found at i:12264876 original size:4 final size:4
Alignment explanation
Indices: 12264839--12265007 Score: 74
Period size: 4 Copynumber: 43.5 Consensus size: 4
12264829 AATTAAAAGA
* * * *
12264839 AAAT AATT AGAT AAAT AAA- AATAT TAAT AGAT AAAT -AAT -AAT -AAT
1 AAAT AAAT AAAT AAAT AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AAAT
* * *
12264884 -AAT AGAT AAAT -AAT -AAT ATAT AAAT AGAT AAAT -AAT -AAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
* * * * *
12264927 ATATAT TAAC AGAT AAAT AAAA AAAT -AAT AAAT ATATAT TAAT AAAT
1 A-A-AT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A-A-AT AAAT AAAT
*
12264974 AGTAAT -AAT AAAT AAAT AAAT -AAT AAAT ACAT AA
1 A--AAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
12265008 GATACAAAAA
Statistics
Matches: 125, Mismatches: 26, Indels: 28
0.70 0.15 0.16
Matches are distributed among these distances:
3 35 0.28
4 78 0.62
5 5 0.04
6 7 0.06
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (4 bp):
AAAT
Found at i:12264880 original size:14 final size:13
Alignment explanation
Indices: 12264852--12265103 Score: 130
Period size: 14 Copynumber: 18.9 Consensus size: 13
12264842 TAATTAGATA
*
12264852 AATAA-AAATATT
1 AATAATAAATAAT
12264864 AATAGATAAATAAT
1 AATA-ATAAATAAT
12264878 AATAAT-AATAGAT
1 AATAATAAATA-AT
12264891 AAATAAT-AATATAT
1 -AATAATAAATA-AT
12264905 AAATAGATAAATAAT
1 -AATA-ATAAATAAT
* *
12264920 AATAAATATATATT
1 AAT-AATAAATAAT
* *
12264934 AACAGATAAATAAAAA
1 AATA-ATAAAT--AAT
12264950 AATAATAAATATAT
1 AATAATAAATA-AT
* *
12264964 ATTAATAAATAGT
1 AATAATAAATAAT
12264977 AATAATAAATAAAT
1 AATAATAAAT-AAT
12264991 AAATAATAAATACAT
1 -AATAATAAATA-AT
* *
12265006 AA-GATACAA-AAA
1 AATAATA-AATAAT
*
12265018 AATAA-AAATAAA
1 AATAATAAATAAT
*
12265030 AATAA-AAATAAA
1 AATAATAAATAAT
*
12265042 AATAA-AAATAAA
1 AATAATAAATAAT
*
12265054 AATAA-AAATAAA
1 AATAATAAATAAT
*
12265066 AATAA-AAATAAA
1 AATAATAAATAAT
*
12265078 AAT-ATGAAATACAA
1 AATAAT-AAATA-AT
*
12265092 AATAAAAAATAA
1 AATAATAAATAA
12265104 AATGGACCTA
Statistics
Matches: 201, Mismatches: 18, Indels: 41
0.77 0.07 0.16
Matches are distributed among these distances:
11 3 0.01
12 66 0.33
13 28 0.14
14 72 0.36
15 24 0.12
16 8 0.04
ACGTcount: A:0.71, C:0.02, G:0.03, T:0.25
Consensus pattern (13 bp):
AATAATAAATAAT
Found at i:12264881 original size:6 final size:6
Alignment explanation
Indices: 12264852--12265081 Score: 77
Period size: 6 Copynumber: 35.2 Consensus size: 6
12264842 TAATTAGATA
* *
12264852 AATAAA AATATT AATAGAT AAATAAT AATAAT AATAGAT AAATAAT AATATAT
1 AATAAT AATAAT AATA-AT -AATAAT AATAAT AATA-AT -AATAAT AATA-AT
* * *
12264905 AAATAGAT AAATAAT AATAAAT ATATATT AACAGAT AAATAA- AAAAAT
1 -AATA-AT -AATAAT AAT-AAT A-ATAAT AATA-AT -AATAAT AATAAT
* *
12264953 AATAAAT ATATATT AATAAAT AGTAAT AATAAAT AAATAAAT AATAAAT
1 AAT-AAT A-ATAAT AAT-AAT AATAAT AAT-AAT -AAT-AAT AAT-AAT
* * * * * * * *
12265002 ACATAA- GATACAA AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
1 A-ATAAT AATA-AT AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT
* * * * *
12265051 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT A
1 AATAAT AATAAT AATAAT AATAAT AATAAT A
12265082 TGAAATACAA
Statistics
Matches: 187, Mismatches: 18, Indels: 38
0.77 0.07 0.16
Matches are distributed among these distances:
5 7 0.04
6 99 0.53
7 46 0.25
8 35 0.19
ACGTcount: A:0.70, C:0.01, G:0.03, T:0.26
Consensus pattern (6 bp):
AATAAT
Found at i:12264921 original size:42 final size:43
Alignment explanation
Indices: 12264840--12265007 Score: 147
Period size: 42 Copynumber: 4.0 Consensus size: 43
12264830 ATTAAAAGAA
*
12264840 AATAATTAGATAAATAA-AAAT--ATTAATAGATAAATA-ATAAT
1 AATAA-TAGATAAATAATAAATAAATAAATA-ATAAATACATAAT
*
12264881 AATAATAGATAAATAAT-AATATATAAATAGATAAATA-ATAAT
1 AATAATAGATAAATAATAAATAAATAAATA-ATAAATACATAAT
* * * * * *
12264923 AA-ATATATATTAACAGATAAATAAAAAAATAATAAATATATATT
1 AATA-ATAGATAAATA-ATAAATAAATAAATAATAAATACATAAT
12264967 AATAAATAG-T-AATAATAAATAAATAAATAATAAATACATAA
1 AAT-AATAGATAAATAATAAATAAATAAATAATAAATACATAA
12265008 GATACAAAAA
Statistics
Matches: 106, Mismatches: 12, Indels: 17
0.79 0.09 0.13
Matches are distributed among these distances:
40 14 0.13
41 6 0.06
42 53 0.50
43 12 0.11
44 17 0.16
45 3 0.03
46 1 0.01
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (43 bp):
AATAATAGATAAATAATAAATAAATAAATAATAAATACATAAT
Found at i:12265099 original size:6 final size:6
Alignment explanation
Indices: 12265015--12265105 Score: 146
Period size: 6 Copynumber: 14.7 Consensus size: 6
12265005 TAAGATACAA
12265015 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
*
12265063 AAAAAT AAAAAT AAAAAT ATGAAAT ACAAAAT AAAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT A-AAAAT A-AAAAT -AAAAAT AAAA
12265106 TGGACCTACC
Statistics
Matches: 80, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
6 65 0.81
7 14 0.17
8 1 0.01
ACGTcount: A:0.81, C:0.01, G:0.01, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:12265386 original size:42 final size:43
Alignment explanation
Indices: 12265279--12265562 Score: 349
Period size: 42 Copynumber: 6.6 Consensus size: 43
12265269 AAAATTTAAT
* * * *
12265279 CAAAACTCCTCTAAGCAGATGCTTAACGACTTTGAAAAACATAAAA
1 CAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTG-AAAA-AT-AAA
* * * *
12265325 CAAAGCTCCTATAATCAGAGGTTTAATGACTTTG-AAAATAAA
1 CAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAAAAATAAA
* *
12265367 TAAAGCTCTTCTAAGCAGAGGCTCAATGACTTTG-AAAATAAA
1 CAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAAAAATAAA
*
12265409 TAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAAAAATAAA
1 CAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAAAAATAAA
* * ***
12265452 CAAAGCTTCTCTAAACAGAGGCTCAACCCCTTTG-AAAATAAA
1 CAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAAAAATAAA
* *
12265494 TAAAGCTCCTCTAAGCAGAGGCTCCATGACTTTGAAAAATAAA
1 CAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAAAAATAAA
*
12265537 CAAAGCTCCTCTAAACAGAGGCTCAA
1 CAAAGCTCCTCTAAGCAGAGGCTCAA
12265563 CCAATTTTGA
Statistics
Matches: 207, Mismatches: 29, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
42 107 0.52
43 69 0.33
44 3 0.01
46 28 0.14
ACGTcount: A:0.42, C:0.21, G:0.14, T:0.23
Consensus pattern (43 bp):
CAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAAAAATAAA
Found at i:12265471 original size:85 final size:85
Alignment explanation
Indices: 12265326--12265619 Score: 361
Period size: 85 Copynumber: 3.5 Consensus size: 85
12265316 AACATAAAAC
* * * * * *
12265326 AAAGCTCCTATAATCAGAGGTTTAATGACTTTG-AAAATAAATAAAGC-TCTTCTAAGCAGAGGC
1 AAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAAAAATAAACAAAGCTTC-TCTAAACAGAGGC
**
12265389 TCAATGACTTTGAAAATAAAT
65 TCAACCACTTTGAAAATAAAT
12265410 AAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAAAAATAAACAAAGCTTCTCTAAACAGAGGCT
1 AAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAAAAATAAACAAAGCTTCTCTAAACAGAGGCT
*
12265475 CAACCCCTTTGAAAATAAAT
66 CAACCACTTTGAAAATAAAT
* *
12265495 AAAGCTCCTCTAAGCAGAGGCTCCATGACTTTGAAAAATAAACAAAGCTCCTCTAAACAGAGGCT
1 AAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAAAAATAAACAAAGCTTCTCTAAACAGAGGCT
* *
12265560 CAACCAATTTTGAAAGTAAAGT
66 CAACC-ACTTTGAAAATAAA-T
*
12265582 ---GCTCCTCTAAACAGAGGCATCACA--ACTTT-AAAAATAAA
1 AAAGCTCCTCTAAGCAGAGGC-TCA-ATGACTTTGAAAAATAAA
12265620 AAGGTTCCTA
Statistics
Matches: 188, Mismatches: 16, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
83 9 0.05
84 51 0.27
85 113 0.60
86 14 0.07
87 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (85 bp):
AAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAAAAATAAACAAAGCTTCTCTAAACAGAGGCT
CAACCACTTTGAAAATAAAT
Found at i:12266659 original size:8 final size:9
Alignment explanation
Indices: 12266646--12266708 Score: 55
Period size: 10 Copynumber: 7.3 Consensus size: 9
12266636 TTCATTCACT
12266646 TTTTTTTC-
1 TTTTTTTCA
12266654 TTTTTTTC-
1 TTTTTTTCA
*
12266662 -TTTTTTCG
1 TTTTTTTCA
12266670 TTTCTTTTCA
1 TTT-TTTTCA
*
12266680 TTTTTTTAA
1 TTTTTTTCA
12266689 TGTTTTTT-A
1 T-TTTTTTCA
12266698 -TTTTTTCA
1 TTTTTTTCA
12266706 TTT
1 TTT
12266709 CATTTTTTTC
Statistics
Matches: 47, Mismatches: 2, Indels: 11
0.78 0.03 0.18
Matches are distributed among these distances:
7 13 0.28
8 9 0.19
9 11 0.23
10 14 0.30
ACGTcount: A:0.08, C:0.10, G:0.03, T:0.79
Consensus pattern (9 bp):
TTTTTTTCA
Found at i:12276537 original size:18 final size:18
Alignment explanation
Indices: 12276516--12276576 Score: 52
Period size: 18 Copynumber: 3.2 Consensus size: 18
12276506 TATTTTAAAG
12276516 TATAGTATATGAATAATA
1 TATAGTATATGAATAATA
* * *
12276534 TATATTATTATTATTTTAA-A
1 TATAGTA-TATGA--ATAATA
12276554 GTATAGTATATGAATAATA
1 -TATAGTATATGAATAATA
12276573 TATA
1 TATA
12276577 TTTTTAAAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 10
0.67 0.12 0.21
Matches are distributed among these distances:
18 13 0.41
19 5 0.16
20 5 0.16
21 9 0.28
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (18 bp):
TATAGTATATGAATAATA
Found at i:12276553 original size:39 final size:39
Alignment explanation
Indices: 12276504--12276578 Score: 150
Period size: 39 Copynumber: 1.9 Consensus size: 39
12276494 ATTTTATATC
12276504 ATTATTTTAAAGTATAGTATATGAATAATATATATTATT
1 ATTATTTTAAAGTATAGTATATGAATAATATATATTATT
12276543 ATTATTTTAAAGTATAGTATATGAATAATATATATT
1 ATTATTTTAAAGTATAGTATATGAATAATATATATT
12276579 TTTAAAATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (39 bp):
ATTATTTTAAAGTATAGTATATGAATAATATATATTATT
Found at i:12284727 original size:63 final size:60
Alignment explanation
Indices: 12284647--12284824 Score: 220
Period size: 63 Copynumber: 2.9 Consensus size: 60
12284637 TTTTTTTAAG
* *
12284647 TTTATTTTTAAGAAAAATTGATATTTTCAACTTTTCCTCAAAAATATTTTTTAGGAAAAAAAAA
1 TTTATTTTCAAG-AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGG---AAAAAA
* *
12284711 TTTATTTTCAAGAAAATTGATACATTCAACTTTTCTTCAAAAATATTTTTTA-G--AAAA
1 TTTATTTTCAAGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGGAAAAAA
* *
12284768 CTTACTTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATAATTTTTT-GGAA
1 TTTATTTTCAA-GAAAATTGATACTTTCAACTTTTCCTCAAAAAT-ATTTTTTAGGAA
12284825 TTTTATTTAA
Statistics
Matches: 101, Mismatches: 8, Indels: 13
0.83 0.07 0.11
Matches are distributed among these distances:
57 13 0.13
58 31 0.31
59 8 0.08
62 1 0.01
63 37 0.37
64 11 0.11
ACGTcount: A:0.40, C:0.11, G:0.07, T:0.42
Consensus pattern (60 bp):
TTTATTTTCAAGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGGAAAAAA
Found at i:12284842 original size:58 final size:59
Alignment explanation
Indices: 12284541--12284842 Score: 212
Period size: 63 Copynumber: 5.1 Consensus size: 59
12284531 TTATGCAGGA
* * * **
12284541 AAAATTGATACTTTCAACTTCTCC-CCAAAATA-TTTTTA--AAAGCTTTAATTTCGAG-G
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGGAAA--TTTACTTTTAAGAG
* * *** * *
12284597 AAAATTGATACTTTCAACTTTTCCTAAAAAAAAAACCCTTTTTTTTTAAGTTTATTTTTAAGA-
1 AAAATTGATACTTTCAACTTTTCCT--CAAAAATA---TTTTTTAGGAAATTTACTTTTAAGAG
* *
12284660 AAAATTGATATTTTCAACTTTTCCTCAAAAATATTTTTTAGGAAAAAAAAATTTA-TTTTCA-AG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGG------AAATTTACTTTTAAGAG
* * * * *
12284723 AAAATTGATACATTCAACTTTTCTTCAAAAATATTTTTTAGAAAACTTACTTTCAAG-G
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGGAAATTTACTTTTAAGAG
* *
12284781 AAAATTGATACTTTCAACTTTTCCTCAAAAATAATTTTTT-GGAATTTTA-TTTAAAGAG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAAT-ATTTTTTAGGAAATTTACTTTTAAGAG
12284839 AAAA
1 AAAA
12284843 AAATAAAATA
Statistics
Matches: 195, Mismatches: 30, Indels: 40
0.74 0.11 0.15
Matches are distributed among these distances:
56 23 0.12
57 12 0.06
58 52 0.27
59 12 0.06
61 6 0.03
62 1 0.01
63 81 0.42
64 6 0.03
65 2 0.01
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.41
Consensus pattern (59 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGGAAATTTACTTTTAAGAG
Found at i:12284850 original size:5 final size:5
Alignment explanation
Indices: 12284842--12284908 Score: 80
Period size: 5 Copynumber: 12.4 Consensus size: 5
12284832 TAAAGAGAAA
12284842 AAAAT AAAAT AAAAAT AAAAT AAAAT AAAAAT AAAAAT AAAGAT AAAAAT
1 AAAAT AAAAT -AAAAT AAAAT AAAAT -AAAAT -AAAAT AAA-AT -AAAAT
*
12284892 TAAAT AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AA
12284909 GAAATACTAA
Statistics
Matches: 56, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
5 33 0.59
6 20 0.36
7 3 0.05
ACGTcount: A:0.79, C:0.00, G:0.01, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:12284878 original size:34 final size:34
Alignment explanation
Indices: 12284840--12284914 Score: 109
Period size: 34 Copynumber: 2.2 Consensus size: 34
12284830 TTTAAAGAGA
12284840 AAAAAATAAA-ATAAAAATAAAATAAAATAAAA-
1 AAAAAATAAAGATAAAAATAAAATAAAATAAAAT
*
12284872 ATAAAAATAAAGATAAAAATTAAATAAAATAAAAT
1 A-AAAAATAAAGATAAAAATAAAATAAAATAAAAT
*
12284907 AAGAAATA
1 AAAAAATA
12284915 CTAAATGATT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
32 1 0.03
33 9 0.24
34 27 0.71
35 1 0.03
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.19
Consensus pattern (34 bp):
AAAAAATAAAGATAAAAATAAAATAAAATAAAAT
Found at i:12285861 original size:42 final size:40
Alignment explanation
Indices: 12285801--12285913 Score: 104
Period size: 42 Copynumber: 2.8 Consensus size: 40
12285791 GAATAAGAAG
* * *
12285801 AAAAATAA-A-ATCAAATAAAAATGGTAATATATAATTAAA
1 AAAAATAATAGAT-AAATAAAAATAGTAATAGATAAATAAA
* *
12285840 AGAAAATAATTAGATAAATAAAAATATTAATAGATAAATAAT
1 A-AAAATAA-TAGATAAATAAAAATAGTAATAGATAAATAAA
* *
12285882 AATAATAATAGATAAATAGATAAATAATAATA
1 AAAAATAATAGATAAATA-A-AAATAGTAATA
12285914 AATATATATA
Statistics
Matches: 61, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
39 1 0.02
40 17 0.28
41 7 0.11
42 34 0.56
43 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.06, T:0.27
Consensus pattern (40 bp):
AAAAATAATAGATAAATAAAAATAGTAATAGATAAATAAA
Found at i:12285868 original size:17 final size:16
Alignment explanation
Indices: 12285842--12285889 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 16
12285832 TAATTAAAAG
12285842 AAAATAATTAGATAAATA
1 AAAAT-ATTA-ATAAATA
*
12285860 AAAATATTAATAGATA
1 AAAATATTAATAAATA
*
12285876 AATAATAATAATAA
1 AA-AATATTAATAA
12285890 TAGATAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
16 8 0.31
17 13 0.50
18 5 0.19
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (16 bp):
AAAATATTAATAAATA
Found at i:12285880 original size:4 final size:4
Alignment explanation
Indices: 12285843--12285992 Score: 86
Period size: 4 Copynumber: 38.8 Consensus size: 4
12285833 AATTAAAAGA
* * * *
12285843 AAAT AATT AGAT AAAT AAA- AATAT TAAT AGAT AAAT -AAT -AAT -AAT
1 AAAT AAAT AAAT AAAT AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AAAT
* * * * * *
12285888 -AAT AGAT AAAT AGAT AAAT -AAT -AAT AAAT ATAT ATAT TAAC AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
*
12285933 AAAT AAAT AAAT -AAT -AAT AAAT ATATAT TAAT AAAT AGTAAT -AAT
1 AAAT AAAT AAAT AAAT AAAT AAAT A-A-AT AAAT AAAT A--AAT AAAT
12285978 AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAA
12285993 AATACATAAG
Statistics
Matches: 116, Mismatches: 20, Indels: 20
0.74 0.13 0.13
Matches are distributed among these distances:
3 29 0.25
4 79 0.68
5 3 0.03
6 5 0.04
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (4 bp):
AAAT
Found at i:12285900 original size:28 final size:27
Alignment explanation
Indices: 12285868--12286001 Score: 112
Period size: 28 Copynumber: 4.8 Consensus size: 27
12285858 TAAAAATATT
*
12285868 AATAGATAAATAATAATAATAATAGATA
1 AATAAATAAATAATAATAATAATA-ATA
* *
12285896 AATAGATAAATAATAATAAATATATATATT
1 AATAAATAAATAATAAT-AATA-ATA-ATA
*
12285926 AACAAATAAAT-A-AATAAATAATAATA
1 AATAAATAAATAATAAT-AATAATAATA
* * *
12285952 AATATAT-ATTAATAAATAGTAATAATA
1 AATAAATAAATAAT-AATAATAATAATA
*
12285979 AATAAATAAATAAAAATACATAA
1 AATAAATAAATAATAATA-ATAA
12286002 GATACAAAAA
Statistics
Matches: 86, Mismatches: 13, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
25 2 0.02
26 8 0.09
27 22 0.26
28 35 0.41
29 5 0.06
30 14 0.16
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (27 bp):
AATAAATAAATAATAATAATAATAATA
Found at i:12285915 original size:38 final size:37
Alignment explanation
Indices: 12285844--12286001 Score: 137
Period size: 38 Copynumber: 4.1 Consensus size: 37
12285834 ATTAAAAGAA
*
12285844 AATAATTAGATAAATAAAAATATTAATAGATAAATAATAAT
1 AATAA-TAGATAAATAATAA-A-TAATA-ATAAATAATAAT
12285885 AATAATAGATAAATAGATAAATAATAATAAAT-ATATAT
1 AATAATAGATAAATA-ATAAATAATAATAAATAATA-AT
* * * *
12285923 ATTAACAAATAAATAAATAAATAATAATAAATATATATT
1 AATAATAGATAAAT-AATAAATAATAATAAATA-ATAAT
*
12285962 AATAAATAG-T-AATAATAAAT-A-AATAAATAAAAAT
1 AAT-AATAGATAAATAATAAATAATAATAAATAATAAT
12285996 ACATAA
1 A-ATAA
12286002 GATACAAAAA
Statistics
Matches: 100, Mismatches: 10, Indels: 21
0.76 0.08 0.16
Matches are distributed among these distances:
34 6 0.06
35 10 0.10
36 1 0.01
37 10 0.10
38 38 0.38
39 10 0.10
40 17 0.17
41 8 0.08
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (37 bp):
AATAATAGATAAATAATAAATAATAATAAATAATAAT
Done.