Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25814696
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 122000 characters in sequence are not A, C, G, or T
File 62 of 126
Found at i:12554497 original size:13 final size:13
Alignment explanation
Indices: 12554479--12554515 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
12554469 CTTCTTAATG
12554479 TCTTTATATATGT
1 TCTTTATATATGT
*
12554492 TCTTTACATATGT
1 TCTTTATATATGT
*
12554505 TTTTTATATAT
1 TCTTTATATAT
12554516 TCGCTTTTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.24, C:0.08, G:0.05, T:0.62
Consensus pattern (13 bp):
TCTTTATATATGT
Found at i:12555028 original size:18 final size:18
Alignment explanation
Indices: 12555005--12555039 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
12554995 GGCATGATTG
12555005 CCGAATGATTGAACTTGT
1 CCGAATGATTGAACTTGT
12555023 CCGAATGATTGAACTTG
1 CCGAATGATTGAACTTG
12555040 GTTTCCATAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (18 bp):
CCGAATGATTGAACTTGT
Found at i:12555328 original size:160 final size:157
Alignment explanation
Indices: 12555016--12555545 Score: 582
Period size: 160 Copynumber: 3.3 Consensus size: 157
12555006 CGAATGATTG
* *
12555016 AACTTGTCCGAATGATTGAACTTGGTTTCCATAGTTGATATGTGTGAAAAAGTTATCATTTACGT
1 AACTTGTCCGAATGATTGAACTTGGTTTCTATA-TTGATATGTGTGAAAAAG-TAACA-TTACGT
* * * * * *
12555081 CTGTTTAAGACTTTTTATGCTATTAAGAGGCAAACTCGCAAATTTGTTGTTATTGTTCTA-TTTT
63 CTATTTAGGACATTTTATGCTGTTAAAAGGCAAAAT-GCAAATTTGTTGTTATTGTTCTATTTTT
* * *
12555145 ACAATTTGCATAGCTTTAATACATGATATTA
127 ACAGTTTGGATAGCTTCAATACATGATATTA
* *
12555176 AACTTGTCAGAATAATTGAACTTGGTTT-TCACTATTGATATGTGTGAAAAAGCTAACGATTACG
1 AACTTGTCCGAATGATTGAACTTGGTTTCT-A-TATTGATATGTGTGAAAAAG-TAAC-ATTACG
* * *
12555240 TCAATTTAGGACATTTTATGCTGTTAAAAGGCAAAATGCAAATTTGATATTATTGTTCTATTTTT
62 TCTATTTAGGACATTTTATGCTGTTAAAAGGCAAAATGCAAATTTGTTGTTATTGTTCTATTTTT
* *
12555305 ATAGTTTGGATAACTTCAATACATGATATTA
127 ACAGTTTGGATAGCTTCAATACATGATATTA
* *** *
12555336 AACTTGTCCGAATGATTGAACTTGGTTTCTA-AGGTTGATATGTATGAAAAAGTTGTTATATATG
1 AACTTGTCCGAATGATTGAACTTGGTTTCTATA--TTGATATGTGTGAAAAAG-TAACAT-TACG
* * * * **
12555400 TCTATTTCGGACCATTTT-TGCCGTTAAAAGGTAAAATTACAAATTTGTTGTTATTAATCTATTT
62 TCTATTTAGGA-CATTTTATGCTGTTAAAAGGCAAAA-TGCAAATTTGTTGTTATTGTTCTATTT
* *
12555464 TAACAGTTTGGATGGCTTCAATACATGATATTA
125 TTACAGTTTGGATAGCTTCAATACATGATATTA
* * * *
12555497 AACTTTTTCGAATGATTGAACTTAGCTTCTATGATTGATATGTGTGAAA
1 AACTTGTCCGAATGATTGAACTTGGTTTCTAT-ATTGATATGTGTGAAA
12555546 GGCCCAAATG
Statistics
Matches: 313, Mismatches: 45, Indels: 23
0.82 0.12 0.06
Matches are distributed among these distances:
158 1 0.00
159 23 0.07
160 186 0.59
161 102 0.33
163 1 0.00
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.41
Consensus pattern (157 bp):
AACTTGTCCGAATGATTGAACTTGGTTTCTATATTGATATGTGTGAAAAAGTAACATTACGTCTA
TTTAGGACATTTTATGCTGTTAAAAGGCAAAATGCAAATTTGTTGTTATTGTTCTATTTTTACAG
TTTGGATAGCTTCAATACATGATATTA
Found at i:12556182 original size:21 final size:21
Alignment explanation
Indices: 12556158--12556209 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
12556148 GAATAGGAGC
*
12556158 GTGCTAAAATTGAAGAAAAAT
1 GTGCTAAAATTGAACAAAAAT
* * *
12556179 GTGCTAGAATGGATCAAAAAT
1 GTGCTAAAATTGAACAAAAAT
12556200 GTG-TAAAATT
1 GTGCTAAAATT
12556210 TTAGTAGTTG
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 5 0.20
21 20 0.80
ACGTcount: A:0.46, C:0.06, G:0.21, T:0.27
Consensus pattern (21 bp):
GTGCTAAAATTGAACAAAAAT
Found at i:12556818 original size:14 final size:14
Alignment explanation
Indices: 12556799--12556829 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
12556789 TAGCAGCATT
12556799 TTTCTATACAAACA
1 TTTCTATACAAACA
*
12556813 TTTCTATACAAGCA
1 TTTCTATACAAACA
12556827 TTT
1 TTT
12556830 TATGATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.19, G:0.03, T:0.42
Consensus pattern (14 bp):
TTTCTATACAAACA
Found at i:12558051 original size:20 final size:19
Alignment explanation
Indices: 12558020--12558071 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 19
12558010 TTTTTAGTTA
12558020 TATTATTTTTAATGA-ATTTT
1 TATTA-TTTTAAT-ATATTTT
12558040 TACTTATTTTAATATATTTT
1 TA-TTATTTTAATATATTTT
*
12558060 TATTATGTTAAT
1 TATTATTTTAAT
12558072 TCCACATTGC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 10 0.34
20 16 0.55
21 3 0.10
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (19 bp):
TATTATTTTAATATATTTT
Found at i:12558590 original size:51 final size:50
Alignment explanation
Indices: 12558513--12558621 Score: 173
Period size: 50 Copynumber: 2.2 Consensus size: 50
12558503 AAATATGGTG
*
12558513 AAAATGATGTTTAGAGATTTTGGGAATTTAATTCCATAATCAATTCACATT
1 AAAATGATGTTGAGAGATTTTGGGAATTT-ATTCCATAATCAATTCACATT
* * *
12558564 AAAATGATGTTGAGAGATTTTTGGAATTTTTTTCATAATCAATTCACATT
1 AAAATGATGTTGAGAGATTTTGGGAATTTATTCCATAATCAATTCACATT
12558614 AAAATGAT
1 AAAATGAT
12558622 TCCAAAATCA
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
50 27 0.50
51 27 0.50
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.40
Consensus pattern (50 bp):
AAAATGATGTTGAGAGATTTTGGGAATTTATTCCATAATCAATTCACATT
Found at i:12559609 original size:21 final size:21
Alignment explanation
Indices: 12559583--12559630 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
12559573 TTTCTTCTTC
12559583 TTTTATGATATTTTTGCAT-AT
1 TTTTAT-ATATTTTTGCATGAT
*
12559604 TTTTATTTATTTTTGCATGAT
1 TTTTATATATTTTTGCATGAT
12559625 TTTTAT
1 TTTTAT
12559631 TCGCATTGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 11 0.44
21 14 0.56
ACGTcount: A:0.21, C:0.04, G:0.08, T:0.67
Consensus pattern (21 bp):
TTTTATATATTTTTGCATGAT
Found at i:12559631 original size:21 final size:20
Alignment explanation
Indices: 12559591--12559631 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
12559581 TCTTTTATGA
12559591 TATTTTTGCATATTTTTATT
1 TATTTTTGCATATTTTTATT
12559611 TATTTTTGCATGATTTTTATT
1 TATTTTTGCAT-ATTTTTATT
12559632 CGCATTGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.20, C:0.05, G:0.07, T:0.68
Consensus pattern (20 bp):
TATTTTTGCATATTTTTATT
Found at i:12563823 original size:12 final size:12
Alignment explanation
Indices: 12563806--12563853 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
12563796 AATAGGTGTG
12563806 CAAAAAAAAAAA
1 CAAAAAAAAAAA
12563818 CAAAAACAAAAAA
1 CAAAAA-AAAAAA
*
12563831 AAGCAAAAAAAAAA
1 CA--AAAAAAAAAA
*
12563845 GAAAAAAAA
1 CAAAAAAAA
12563854 GGGAGACTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
12 13 0.42
13 7 0.23
14 7 0.23
15 4 0.13
ACGTcount: A:0.88, C:0.08, G:0.04, T:0.00
Consensus pattern (12 bp):
CAAAAAAAAAAA
Found at i:12563838 original size:21 final size:20
Alignment explanation
Indices: 12563807--12563854 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
12563797 ATAGGTGTGC
*
12563807 AAAAAAA-AAAACAAAAACA
1 AAAAAAAGAAAAAAAAAACA
*
12563826 AAAAAAAGCAAAAAAAAAAGA
1 AAAAAAAG-AAAAAAAAAACA
12563847 AAAAAAAG
1 AAAAAAAG
12563855 GGAGACTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 7 0.28
21 18 0.72
ACGTcount: A:0.88, C:0.06, G:0.06, T:0.00
Consensus pattern (20 bp):
AAAAAAAGAAAAAAAAAACA
Found at i:12565130 original size:38 final size:38
Alignment explanation
Indices: 12565069--12565174 Score: 115
Period size: 38 Copynumber: 2.8 Consensus size: 38
12565059 AATTGAAGCA
*
12565069 CTTGTGAATCTTTGAATTGCTTGCGAATCTTAAAATTG
1 CTTGTGAATCTTTGAATTGCTTGCGAACCTTAAAATTG
* * **
12565107 CTTGTGAATTTTTTAAGTT-CTTGCGAACCTTTGAATTG
1 CTTGTGAATCTTTGAA-TTGCTTGCGAACCTTAAAATTG
** * *
12565145 CTTGCAAATCTTTGAATTTCTTGCAAACCT
1 CTTGTGAATCTTTGAATTGCTTGCGAACCT
12565175 GAAACCTTTG
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
37 2 0.04
38 52 0.93
39 2 0.04
ACGTcount: A:0.25, C:0.16, G:0.16, T:0.43
Consensus pattern (38 bp):
CTTGTGAATCTTTGAATTGCTTGCGAACCTTAAAATTG
Found at i:12565171 original size:19 final size:19
Alignment explanation
Indices: 12565069--12565168 Score: 103
Period size: 19 Copynumber: 5.3 Consensus size: 19
12565059 AATTGAAGCA
*
12565069 CTTGTGAATCTTTGAATTG
1 CTTGCGAATCTTTGAATTG
**
12565088 CTTGCGAATCTTAAAATTG
1 CTTGCGAATCTTTGAATTG
* * *
12565107 CTTGTGAATTTTTTAAGTT-
1 CTTGCGAATCTTTGAA-TTG
*
12565126 CTTGCGAACCTTTGAATTG
1 CTTGCGAATCTTTGAATTG
* *
12565145 CTTGCAAATCTTTGAATTT
1 CTTGCGAATCTTTGAATTG
12565164 CTTGC
1 CTTGC
12565169 AAACCTGAAA
Statistics
Matches: 65, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
18 2 0.03
19 61 0.94
20 2 0.03
ACGTcount: A:0.23, C:0.15, G:0.17, T:0.45
Consensus pattern (19 bp):
CTTGCGAATCTTTGAATTG
Found at i:12565862 original size:51 final size:51
Alignment explanation
Indices: 12565798--12565904 Score: 187
Period size: 51 Copynumber: 2.1 Consensus size: 51
12565788 AAATCTGGTG
*
12565798 AAAATGATGTTGAGAGATTTTTAGGATTTAATTACAAAATCAATTCACATT
1 AAAATGATATTGAGAGATTTTTAGGATTTAATTACAAAATCAATTCACATT
* *
12565849 AAAATGATATTGAGAGATTTTTGGGATTTAATTCCAAAATCAATTCACATT
1 AAAATGATATTGAGAGATTTTTAGGATTTAATTACAAAATCAATTCACATT
12565900 AAAAT
1 AAAAT
12565905 TAAATCAAAT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.42, C:0.08, G:0.13, T:0.36
Consensus pattern (51 bp):
AAAATGATATTGAGAGATTTTTAGGATTTAATTACAAAATCAATTCACATT
Found at i:12570126 original size:15 final size:16
Alignment explanation
Indices: 12570100--12570129 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
12570090 GTTACACGTG
12570100 ACATGATACAATTAAC
1 ACATGATACAATTAAC
12570116 ACATG-TACAATTAA
1 ACATGATACAATTAA
12570130 TTCGTTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.50, C:0.17, G:0.07, T:0.27
Consensus pattern (16 bp):
ACATGATACAATTAAC
Found at i:12572877 original size:32 final size:33
Alignment explanation
Indices: 12572834--12572914 Score: 94
Period size: 33 Copynumber: 2.4 Consensus size: 33
12572824 AAATTTGAGT
*
12572834 TTTATCCTATTATAAGTAATA-AAA-CAAATAGAC
1 TTTAT-CTATTATAA-AAATATAAAGCAAATAGAC
*
12572867 TTTATCTATTATAAAAATATAAAGCAAATGGAC
1 TTTATCTATTATAAAAATATAAAGCAAATAGAC
*
12572900 CTTATCTCATTATAA
1 TTTATCT-ATTATAA
12572915 TAAAAATATT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
31 4 0.10
32 12 0.29
33 19 0.45
34 7 0.17
ACGTcount: A:0.46, C:0.12, G:0.06, T:0.36
Consensus pattern (33 bp):
TTTATCTATTATAAAAATATAAAGCAAATAGAC
Found at i:12595215 original size:29 final size:27
Alignment explanation
Indices: 12595180--12595249 Score: 88
Period size: 26 Copynumber: 2.6 Consensus size: 27
12595170 TTTATTTAAA
* *
12595180 TTAATTAAATTTTTAAAATTTATTTTCAT
1 TTAATTAAATTTTT--AATATATATTCAT
12595209 TTAATTAAATTTTT-ATATATATTCAT
1 TTAATTAAATTTTTAATATATATTCAT
*
12595235 TCAATTAAATTTTTA
1 TTAATTAAATTTTTA
12595250 GTTAGATAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 23 0.62
29 14 0.38
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (27 bp):
TTAATTAAATTTTTAATATATATTCAT
Found at i:12595282 original size:15 final size:15
Alignment explanation
Indices: 12595262--12595295 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
12595252 TAGATAAAAA
12595262 TAATTAATTATTTTT
1 TAATTAATTATTTTT
12595277 TAATTAATTATTTTT
1 TAATTAATTATTTTT
12595292 TAAT
1 TAAT
12595296 AAAGATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TAATTAATTATTTTT
Found at i:12595328 original size:29 final size:28
Alignment explanation
Indices: 12595295--12595349 Score: 92
Period size: 29 Copynumber: 1.9 Consensus size: 28
12595285 TATTTTTTAA
12595295 TAAAGATTTAATTAATGAAAATAAATATT
1 TAAAGATTTAATTAATGAAAA-AAATATT
*
12595324 TAAAGATTTAATTAATTAAAAAAATA
1 TAAAGATTTAATTAATGAAAAAAATA
12595350 AAAACTTAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 5 0.20
29 20 0.80
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.36
Consensus pattern (28 bp):
TAAAGATTTAATTAATGAAAAAAATATT
Found at i:12597239 original size:25 final size:25
Alignment explanation
Indices: 12597211--12597261 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
12597201 TTTATAATCA
12597211 TACAAACTTATCTTTTAAGAATCTT
1 TACAAACTTATCTTTTAAGAATCTT
*
12597236 TACAAACTTATTTTTTAAGAATCTT
1 TACAAACTTATCTTTTAAGAATCTT
12597261 T
1 T
12597262 TTTCTCTTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.35, C:0.14, G:0.04, T:0.47
Consensus pattern (25 bp):
TACAAACTTATCTTTTAAGAATCTT
Found at i:12601805 original size:3 final size:3
Alignment explanation
Indices: 12601792--12601837 Score: 78
Period size: 3 Copynumber: 16.0 Consensus size: 3
12601782 TGACCAACTT
12601792 ATA AT- ATA ATA ATA ATA ATA AT- ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
12601838 GTAAAATTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
2 4 0.10
3 37 0.90
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:12601814 original size:17 final size:17
Alignment explanation
Indices: 12601792--12601837 Score: 83
Period size: 17 Copynumber: 2.6 Consensus size: 17
12601782 TGACCAACTT
12601792 ATAATATAATAATAATA
1 ATAATATAATAATAATA
12601809 ATAATATAATAATAATA
1 ATAATATAATAATAATA
12601826 ATAATAATAATA
1 ATAAT-ATAATA
12601838 GTAAAATTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
17 22 0.79
18 6 0.21
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
ATAATATAATAATAATA
Found at i:12601820 original size:20 final size:20
Alignment explanation
Indices: 12601797--12601834 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
12601787 AACTTATAAT
12601797 ATAATAATAATAATAATATA
1 ATAATAATAATAATAATATA
12601817 ATAATAATAATAATAATA
1 ATAATAATAATAATAATA
12601835 ATAGTAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (20 bp):
ATAATAATAATAATAATATA
Found at i:12603956 original size:2 final size:2
Alignment explanation
Indices: 12603949--12603975 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
12603939 TTTCTTTTAC
12603949 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
12603976 TGGAAATGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:12608361 original size:17 final size:17
Alignment explanation
Indices: 12608339--12608373 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
12608329 TGCTACCTGA
12608339 CCAGTTTGTCCAAGTCT
1 CCAGTTTGTCCAAGTCT
12608356 CCAGTTTGTCCAAGTCT
1 CCAGTTTGTCCAAGTCT
12608373 C
1 C
12608374 ATCGCTTTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.17, C:0.31, G:0.17, T:0.34
Consensus pattern (17 bp):
CCAGTTTGTCCAAGTCT
Found at i:12609505 original size:16 final size:16
Alignment explanation
Indices: 12609482--12609519 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
12609472 TATTTTATTT
12609482 TATAAAAATTTAAAATA
1 TATAAAAA-TTAAAATA
*
12609499 TATAAAAATTAATATA
1 TATAAAAATTAAAATA
12609515 TATAA
1 TATAA
12609520 TTCAATTTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
TATAAAAATTAAAATA
Found at i:12609782 original size:48 final size:48
Alignment explanation
Indices: 12609711--12609813 Score: 161
Period size: 48 Copynumber: 2.1 Consensus size: 48
12609701 GCATAAAGAA
* * *
12609711 ACGGGCCAACATTAGGCTCTGAGATAGAAAATATTCGGCCTAAATAGC
1 ACGGGCCAACATTAGGCTCTGAGATAGAAAACATACGGCCTAAATAAC
* *
12609759 ACGGGCCAACATTGGGCTCTGAGATGGAAAACATACGGCCTAAATAAC
1 ACGGGCCAACATTAGGCTCTGAGATAGAAAACATACGGCCTAAATAAC
12609807 ACGGGCC
1 ACGGGCC
12609814 GATGTTGGCT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.17
Consensus pattern (48 bp):
ACGGGCCAACATTAGGCTCTGAGATAGAAAACATACGGCCTAAATAAC
Found at i:12615392 original size:3 final size:3
Alignment explanation
Indices: 12615384--12615437 Score: 99
Period size: 3 Copynumber: 18.0 Consensus size: 3
12615374 CAATGCTCTG
*
12615384 ATT ATT ATT ATT ATT ATT ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
12615432 ATT ATT
1 ATT ATT
12615438 TTTCTGCAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:12616374 original size:14 final size:15
Alignment explanation
Indices: 12616338--12616371 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
12616328 TCATACAATT
*
12616338 ATTTTTAAAATATAA
1 ATTTTAAAAATATAA
*
12616353 ATTTTAAAAATTTAA
1 ATTTTAAAAATATAA
12616368 ATTT
1 ATTT
12616372 AAATTCAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
ATTTTAAAAATATAA
Found at i:12625231 original size:7 final size:7
Alignment explanation
Indices: 12625219--12625244 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
12625209 GGTATCAGAG
12625219 CGAGGTT
1 CGAGGTT
12625226 CGAGGTT
1 CGAGGTT
12625233 CGAGGTT
1 CGAGGTT
12625240 CGAGG
1 CGAGG
12625245 AAGTTTGAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.15, G:0.46, T:0.23
Consensus pattern (7 bp):
CGAGGTT
Found at i:12630173 original size:26 final size:26
Alignment explanation
Indices: 12630121--12630176 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
12630111 TCTTCTTAGC
* * * **
12630121 TATAGATTTGGTAAAAATAGATCATA
1 TATAGATTCGCTAAAAATAAAAAATA
12630147 TATAGATTCGCTAAAAATAAAAAATA
1 TATAGATTCGCTAAAAATAAAAAATA
12630173 TATA
1 TATA
12630177 TATTTTATGT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.52, C:0.05, G:0.11, T:0.32
Consensus pattern (26 bp):
TATAGATTCGCTAAAAATAAAAAATA
Found at i:12632894 original size:3 final size:3
Alignment explanation
Indices: 12632886--12632912 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
12632876 AAACATTGGC
12632886 CAT CAT CAT CAT CAT CAT CAT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT
12632913 AGGCATTGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:12634298 original size:24 final size:24
Alignment explanation
Indices: 12634271--12634316 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
12634261 AACTAATAAA
12634271 AATTAATTA-AAAATTAAAAAATCT
1 AATT-ATTATAAAATTAAAAAATCT
* *
12634295 AATTTTTATGAAATTAAAAAAT
1 AATTATTATAAAATTAAAAAAT
12634317 TTTAGTTTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 3 0.16
24 16 0.84
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (24 bp):
AATTATTATAAAATTAAAAAATCT
Found at i:12634333 original size:25 final size:24
Alignment explanation
Indices: 12634281--12634333 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 24
12634271 AATTAATTAA
* *
12634281 AAATTAAAAAATCTAATTTTTATG
1 AAATTAAAAAATCTAATTTGTATC
* *
12634305 AAATTAAAAAATTTTAGTTTGTATC
1 AAATTAAAAAA-TCTAATTTGTATC
12634330 AAAT
1 AAAT
12634334 AATTTTAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 11 0.46
25 13 0.54
ACGTcount: A:0.49, C:0.04, G:0.06, T:0.42
Consensus pattern (24 bp):
AAATTAAAAAATCTAATTTGTATC
Found at i:12640206 original size:21 final size:22
Alignment explanation
Indices: 12640168--12640211 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
12640158 GGATTCAAAT
* *
12640168 ATTTTGATACAAAGATTT-TTA
1 ATTTTGAGACAAAAATTTATTA
*
12640189 ATTTTGAGATAAAAATTTATTA
1 ATTTTGAGACAAAAATTTATTA
12640211 A
1 A
12640212 ACTCAAATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.43, C:0.02, G:0.09, T:0.45
Consensus pattern (22 bp):
ATTTTGAGACAAAAATTTATTA
Found at i:12640376 original size:15 final size:17
Alignment explanation
Indices: 12640350--12640384 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
12640340 TGATTCGAAA
12640350 TAAATATTAAA-TTATT
1 TAAATATTAAATTTATT
12640366 TAAAT-TTAAATTTATT
1 TAAATATTAAATTTATT
12640382 TAA
1 TAA
12640385 TAAAAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TAAATATTAAATTTATT
Found at i:12640436 original size:24 final size:26
Alignment explanation
Indices: 12640406--12640457 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 26
12640396 TTGATTTTTG
* *
12640406 TATTT-AATTTTAAATTTAAT-TATA
1 TATTTAAATTTGAAAGTTAATATATA
12640430 TATTTAAATTTGAAAGTTAATATATA
1 TATTTAAATTTGAAAGTTAATATATA
12640456 TA
1 TA
12640458 AGTAAAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 13 0.54
26 6 0.25
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (26 bp):
TATTTAAATTTGAAAGTTAATATATA
Found at i:12640463 original size:26 final size:25
Alignment explanation
Indices: 12640411--12640463 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
12640401 TTTTGTATTT
* * **
12640411 AATTTTAAATTTAATTATATATTTA
1 AATTTGAAAGTTAATTATATAAGTA
12640436 AATTTGAAAGTTAATATATATAAGTA
1 AATTTGAAAGTTAAT-TATATAAGTA
12640462 AA
1 AA
12640464 ATAATAATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (25 bp):
AATTTGAAAGTTAATTATATAAGTA
Found at i:12640519 original size:23 final size:23
Alignment explanation
Indices: 12640492--12640550 Score: 56
Period size: 23 Copynumber: 2.7 Consensus size: 23
12640482 TTTTGATTTA
12640492 AATTTATATA-TATAAATAATAAT
1 AATTTATATATTA-AAATAATAAT
* *
12640515 AATTTTTTTATTAAAATAATAA-
1 AATTTATATATTAAAATAATAAT
12640537 AA---ATATATTAAAAT
1 AATTTATATATTAAAAT
12640551 TTAAAAATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
19 10 0.32
22 2 0.06
23 17 0.55
24 2 0.06
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (23 bp):
AATTTATATATTAAAATAATAAT
Found at i:12640557 original size:18 final size:19
Alignment explanation
Indices: 12640523--12640559 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
12640513 ATAATTTTTT
12640523 TATTAAAATAATAAAAATA
1 TATTAAAATAATAAAAATA
*
12640542 TATTAAAAT-TTAAAAATA
1 TATTAAAATAATAAAAATA
12640560 CGATTAGAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
TATTAAAATAATAAAAATA
Found at i:12640565 original size:19 final size:19
Alignment explanation
Indices: 12640524--12640565 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
12640514 TAATTTTTTT
*
12640524 ATTAAAATAATAAAAATAT
1 ATTAAAATAATAAAAATAG
*
12640543 ATTAAAAT-TTAAAAATACG
1 ATTAAAATAATAAAAATA-G
12640562 ATTA
1 ATTA
12640566 GAGTAGTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (19 bp):
ATTAAAATAATAAAAATAG
Found at i:12644070 original size:119 final size:119
Alignment explanation
Indices: 12643859--12644218 Score: 659
Period size: 119 Copynumber: 3.0 Consensus size: 119
12643849 TGTCGTGTAG
*
12643859 ATTTAACTATTTTTATTTTCATATCATATAAAATACTAAAATTTATATATTTATATTATATCTTA
1 ATTTAACTATTTTTATTTTCATATCATATAAAATATTAAAATTTATATATTTATATTATATCTTA
12643924 TAAAAAAATTATGTATTATAATTCATGTTGATATAAAAATATAAAATATTTTTT
66 TAAAAAAATTATGTATTATAATTCATGTTGATATAAAAATATAAAATATTTTTT
*
12643978 ATTTAACTATTTTTATTTTCATATCATATAAAATATTGAAATTTATATATTTATATTATATCTTA
1 ATTTAACTATTTTTATTTTCATATCATATAAAATATTAAAATTTATATATTTATATTATATCTTA
12644043 TAAAAAAATTATGTATTATAATTCATGTTGATAT-AAAATATAAAATATTTTTT
66 TAAAAAAATTATGTATTATAATTCATGTTGATATAAAAATATAAAATATTTTTT
* *
12644096 ATTTAACTATTTTTATTTTCATATCATATAAAATATTAAAATTTATATATTTATGTGATATCTTA
1 ATTTAACTATTTTTATTTTCATATCATATAAAATATTAAAATTTATATATTTATATTATATCTTA
* *
12644161 TAAAAAAATTATGTATTATAATTCATGTTGATATACAATTATAAAATATTTTTT
66 TAAAAAAATTATGTATTATAATTCATGTTGATATAAAAATATAAAATATTTTTT
12644215 ATTT
1 ATTT
12644219 TATTAAATTT
Statistics
Matches: 233, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
118 115 0.49
119 118 0.51
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (119 bp):
ATTTAACTATTTTTATTTTCATATCATATAAAATATTAAAATTTATATATTTATATTATATCTTA
TAAAAAAATTATGTATTATAATTCATGTTGATATAAAAATATAAAATATTTTTT
Found at i:12644299 original size:16 final size:18
Alignment explanation
Indices: 12644267--12644302 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
12644257 TATTATTTTT
12644267 ATATTTTATATTCATATA
1 ATATTTTATATTCATATA
12644285 ATATTTT-TA-TCATATA
1 ATATTTTATATTCATATA
12644301 AT
1 AT
12644303 TACATCGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.50
17 2 0.11
18 7 0.39
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.56
Consensus pattern (18 bp):
ATATTTTATATTCATATA
Found at i:12644506 original size:22 final size:21
Alignment explanation
Indices: 12644466--12644510 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
12644456 ATTTAATTAG
*
12644466 TAAAATTTTTATTTTTTTACTA
1 TAAAATTTTTATTTATTTA-TA
12644488 TAAAATTTTT-TTATATTTATA
1 TAAAATTTTTATT-TATTTATA
12644509 TA
1 TA
12644511 GTAATTGGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (21 bp):
TAAAATTTTTATTTATTTATA
Found at i:12644610 original size:23 final size:22
Alignment explanation
Indices: 12644560--12644611 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
12644550 AAAATATTAA
* *
12644560 AATTTATATATATATATATCAT
1 AATTTATATAAAAATATATCAT
* *
12644582 ATTTTATATAAAAATTATTTCAT
1 AATTTATATAAAAA-TATATCAT
12644605 AATTTAT
1 AATTTAT
12644612 GTTAATATAA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 11 0.46
23 13 0.54
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (22 bp):
AATTTATATAAAAATATATCAT
Found at i:12645308 original size:17 final size:18
Alignment explanation
Indices: 12645286--12645320 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
12645276 TAAAACTTTT
*
12645286 AAATT-AATTTTTTAAAA
1 AAATTAAATTATTTAAAA
12645303 AAATTAAATTATTTAAAA
1 AAATTAAATTATTTAAAA
12645321 TTAATTTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
AAATTAAATTATTTAAAA
Found at i:12648844 original size:29 final size:30
Alignment explanation
Indices: 12648774--12648844 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
12648764 AAAGTAAAGT
*
12648774 TTAAGGGTTAATTTGGATACAAATTAAAAA
1 TTAAGGGTTTATTTGGATACAAATTAAAAA
* * *
12648804 TTAAGGGCTTATTTGGGTGC-AA-TAAAAA
1 TTAAGGGTTTATTTGGATACAAATTAAAAA
12648832 TATAAGGGTTTAT
1 T-TAAGGGTTTAT
12648845 ATAAATGAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
28 7 0.20
29 12 0.34
30 16 0.46
ACGTcount: A:0.39, C:0.04, G:0.21, T:0.35
Consensus pattern (30 bp):
TTAAGGGTTTATTTGGATACAAATTAAAAA
Found at i:12652294 original size:22 final size:23
Alignment explanation
Indices: 12652269--12652320 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
12652259 TTCAATTCGG
12652269 TTCAAATT-GAATAAAAATTCAA
1 TTCAAATTCGAATAAAAATTCAA
**
12652291 TTC-AATTCGAATTTAAATTCAA
1 TTCAAATTCGAATAAAAATTCAA
*
12652313 ATCAAATT
1 TTCAAATT
12652321 TTAAATTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
21 4 0.16
22 17 0.68
23 4 0.16
ACGTcount: A:0.48, C:0.12, G:0.04, T:0.37
Consensus pattern (23 bp):
TTCAAATTCGAATAAAAATTCAA
Found at i:12652309 original size:17 final size:18
Alignment explanation
Indices: 12652289--12652327 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
12652279 ATAAAAATTC
* *
12652289 AATTCAATTCGAA-TTTA
1 AATTCAAATCAAATTTTA
12652306 AATTCAAATCAAATTTTA
1 AATTCAAATCAAATTTTA
12652324 AATT
1 AATT
12652328 TTCATAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.46, C:0.10, G:0.03, T:0.41
Consensus pattern (18 bp):
AATTCAAATCAAATTTTA
Found at i:12652538 original size:14 final size:14
Alignment explanation
Indices: 12652504--12652532 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
12652494 TAAAAGGGTA
12652504 TAATTTTGTGTTAT
1 TAATTTTGTGTTAT
12652518 TAATTTTGTGTTAT
1 TAATTTTGTGTTAT
12652532 T
1 T
12652533 TCTTTTTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.14, T:0.66
Consensus pattern (14 bp):
TAATTTTGTGTTAT
Found at i:12652847 original size:17 final size:19
Alignment explanation
Indices: 12652830--12652872 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 19
12652820 TTTATATAAT
*
12652830 TTATATTAATATAAAATTA
1 TTATATAAATATAAAATTA
12652849 TTATATAAATATATAAAATTA
1 TTATAT-AA-ATATAAAATTA
12652870 TTA
1 TTA
12652873 AAATATTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 6 0.29
20 1 0.05
21 14 0.67
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
TTATATAAATATAAAATTA
Found at i:12653732 original size:12 final size:12
Alignment explanation
Indices: 12653715--12653753 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
12653705 AAGGTAGTAG
12653715 ATAATGATGATT
1 ATAATGATGATT
*
12653727 ATAATGATGATG
1 ATAATGATGATT
* *
12653739 ATAATAATAATT
1 ATAATGATGATT
12653751 ATA
1 ATA
12653754 TTTCCATCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.38
Consensus pattern (12 bp):
ATAATGATGATT
Found at i:12658776 original size:25 final size:27
Alignment explanation
Indices: 12658743--12658793 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 27
12658733 TCAATTTTAA
12658743 TTTATTTTATTATTTA-AT-TAAAATT
1 TTTATTTTATTATTTATATATAAAATT
*
12658768 TTTATTTTATTTTTTATATATAAAAT
1 TTTATTTTATTATTTATATATAAAAT
12658794 AAAAATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 15 0.65
26 2 0.09
27 6 0.26
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (27 bp):
TTTATTTTATTATTTATATATAAAATT
Found at i:12658821 original size:22 final size:22
Alignment explanation
Indices: 12658796--12658875 Score: 77
Period size: 22 Copynumber: 3.9 Consensus size: 22
12658786 TATAAAATAA
12658796 AAATAA-AATAATAATTTTAATT
1 AAATAATAA-AATAATTTTAATT
*
12658818 AAATAATAAAA-AA-TAT-A-T
1 AAATAATAAAATAATTTTAATT
12658836 -AATAA-AATAATAATTTTAATT
1 AAATAATAA-AATAATTTTAATT
12658857 AAATAATAAAAT-ATTTTAA
1 AAATAATAAAATAATTTTAA
12658876 AATTTAAAAG
Statistics
Matches: 48, Mismatches: 2, Indels: 17
0.72 0.03 0.25
Matches are distributed among these distances:
16 2 0.04
17 7 0.15
18 3 0.06
19 3 0.06
20 3 0.06
21 10 0.21
22 16 0.33
23 4 0.08
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (22 bp):
AAATAATAAAATAATTTTAATT
Found at i:12658823 original size:17 final size:17
Alignment explanation
Indices: 12658801--12658865 Score: 67
Period size: 17 Copynumber: 3.5 Consensus size: 17
12658791 AATAAAAATA
12658801 AAATAATAATTTTAATT
1 AAATAATAATTTTAATT
* *
12658818 AAATAATAAAAAATATATAATA
1 AAATAAT----AAT-TTTAATT
12658840 AAATAATAATTTTAATT
1 AAATAATAATTTTAATT
12658857 AAATAATAA
1 AAATAATAA
12658866 AATATTTTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
17 21 0.54
18 3 0.08
21 3 0.08
22 12 0.31
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
AAATAATAATTTTAATT
Found at i:12658847 original size:39 final size:38
Alignment explanation
Indices: 12658789--12658867 Score: 140
Period size: 39 Copynumber: 2.1 Consensus size: 38
12658779 TTTTATATAT
12658789 AAAATAAAAATAAAATAATAATTTTAATTAAATAATAA
1 AAAATAAAAATAAAATAATAATTTTAATTAAATAATAA
*
12658827 AAAATATATAATAAAATAATAATTTTAATTAAATAATAA
1 AAAATA-AAAATAAAATAATAATTTTAATTAAATAATAA
12658866 AA
1 AA
12658868 TATTTTAAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
38 6 0.15
39 33 0.85
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (38 bp):
AAAATAAAAATAAAATAATAATTTTAATTAAATAATAA
Found at i:12665002 original size:2 final size:2
Alignment explanation
Indices: 12664995--12665028 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
12664985 CCAGTCTGTA
*
12664995 AT AT AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12665029 CATGCTGTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:12678170 original size:22 final size:23
Alignment explanation
Indices: 12678133--12678176 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
12678123 AAAATTTTTT
* *
12678133 AAAATTATTTTTAATAATTAATC
1 AAAATTATATTTAATAACTAATC
12678156 AAAATTA-ATTTAATAACTAAT
1 AAAATTATATTTAATAACTAAT
12678177 TAATTAATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (23 bp):
AAAATTATATTTAATAACTAATC
Found at i:12678197 original size:18 final size:18
Alignment explanation
Indices: 12678157--12678210 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
12678147 TAATTAATCA
* *
12678157 AAATTAATTTAAT-AACT
1 AAATTAATTCAATCAATT
12678174 -AATTAATT-AATCAAATT
1 AAATTAATTCAATC-AATT
12678191 AAATTAATTCAATCAATT
1 AAATTAATTCAATCAATT
12678209 AA
1 AA
12678211 TTCAGTTAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
15 3 0.09
16 8 0.25
17 3 0.09
18 14 0.44
19 4 0.12
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (18 bp):
AAATTAATTCAATCAATT
Found at i:12684749 original size:22 final size:24
Alignment explanation
Indices: 12684722--12684765 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
12684712 TGTATATAAA
*
12684722 TTTATTTAAAT-ATA-TTAAAATT
1 TTTATTAAAATAATATTTAAAATT
12684744 TTTATTAAAATAATATTTAAAA
1 TTTATTAAAATAATATTTAAAA
12684766 AAATTAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 3 0.16
24 6 0.32
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (24 bp):
TTTATTAAAATAATATTTAAAATT
Found at i:12684803 original size:33 final size:33
Alignment explanation
Indices: 12684766--12684848 Score: 89
Period size: 33 Copynumber: 2.5 Consensus size: 33
12684756 ATATTTAAAA
* *
12684766 AAATTAAATTTAAAAATCAATAAATCTCAGA-TT
1 AAATTAAATTTAAAAATAAATAAAT-TCAAATTT
**
12684799 AAATT-AATTTAAAAAATAAATTTATTCAAATTT
1 AAATTAAATTT-AAAAATAAATAAATTCAAATTT
*
12684832 AAATTAAATTTTAAAAT
1 AAATTAAATTTAAAAAT
12684849 TTCTTAATAT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
32 9 0.21
33 28 0.67
34 5 0.12
ACGTcount: A:0.55, C:0.05, G:0.01, T:0.39
Consensus pattern (33 bp):
AAATTAAATTTAAAAATAAATAAATTCAAATTT
Found at i:12688691 original size:20 final size:20
Alignment explanation
Indices: 12688646--12688692 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
12688636 ATGTATTTTA
* *
12688646 TATTATTTAATAAATAAGTT
1 TATTATTAAATAAATAAGAT
*
12688666 TTTTATTAAAT-AATATAGAT
1 TATTATTAAATAAATA-AGAT
12688686 TATTATT
1 TATTATT
12688693 TTAGATTAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (20 bp):
TATTATTAAATAAATAAGAT
Found at i:12689438 original size:2 final size:2
Alignment explanation
Indices: 12689433--12689457 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
12689423 TCTCAGTAAG
12689433 CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT C
12689458 ATTTAATCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:12697296 original size:27 final size:27
Alignment explanation
Indices: 12697231--12697298 Score: 66
Period size: 29 Copynumber: 2.5 Consensus size: 27
12697221 TTAATTTAGG
* * *
12697231 ATATTA-ATTTAATAAATATATTATAT
1 ATATTATATTAAAAAAATATATTATAA
* *
12697257 TTATGTATAATTAAAAAAATATTTTATAA
1 ATAT-TAT-ATTAAAAAAATATATTATAA
12697286 ATATTATATTAAA
1 ATATTATATTAAA
12697299 TTAAAATTAT
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
26 3 0.09
27 8 0.24
28 3 0.09
29 19 0.58
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (27 bp):
ATATTATATTAAAAAAATATATTATAA
Found at i:12698275 original size:22 final size:23
Alignment explanation
Indices: 12698250--12698293 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
12698240 AAAGAATTAC
12698250 AAGTTT-C-AATTATTTTTGAATA
1 AAGTTTACAAATT-TTTTTGAATA
12698272 AAGTTTACAAATTTTTTTGAAT
1 AAGTTTACAAATTTTTTTGAAT
12698294 TTATTCTTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 6 0.30
23 10 0.50
24 4 0.20
ACGTcount: A:0.36, C:0.05, G:0.09, T:0.50
Consensus pattern (23 bp):
AAGTTTACAAATTTTTTTGAATA
Found at i:12698518 original size:13 final size:13
Alignment explanation
Indices: 12698500--12698527 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
12698490 ATTTAGTTAG
12698500 AAGTCAACTTCAA
1 AAGTCAACTTCAA
12698513 AAGTCAACTTCAA
1 AAGTCAACTTCAA
12698526 AA
1 AA
12698528 ATTAAACTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.21, G:0.07, T:0.21
Consensus pattern (13 bp):
AAGTCAACTTCAA
Found at i:12698977 original size:41 final size:35
Alignment explanation
Indices: 12698897--12698963 Score: 125
Period size: 35 Copynumber: 1.9 Consensus size: 35
12698887 GTATTATTTT
12698897 TGTGTTTTTATCATTTTCGTTTTCATATGTAATCA
1 TGTGTTTTTATCATTTTCGTTTTCATATGTAATCA
*
12698932 TGTGTTTTTATCGTTTTCGTTTTCATATGTAA
1 TGTGTTTTTATCATTTTCGTTTTCATATGTAA
12698964 ATCTAATCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.18, C:0.10, G:0.13, T:0.58
Consensus pattern (35 bp):
TGTGTTTTTATCATTTTCGTTTTCATATGTAATCA
Found at i:12705632 original size:9 final size:10
Alignment explanation
Indices: 12705606--12705664 Score: 64
Period size: 10 Copynumber: 5.6 Consensus size: 10
12705596 TGAAAACTTT
12705606 AAATTTTTAA
1 AAATTTTTAA
12705616 AAATTTTTAA
1 AAATTTTTAA
*
12705626 AGATTTTTAACAA
1 AAATTTTT---AA
*
12705639 AAATCTTTAA
1 AAATTTTTAA
*
12705649 AATTTTTTAA
1 AAATTTTTAA
12705659 AAATTT
1 AAATTT
12705665 ATTTTTGAGA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
10 32 0.80
13 8 0.20
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.47
Consensus pattern (10 bp):
AAATTTTTAA
Found at i:12710179 original size:18 final size:18
Alignment explanation
Indices: 12710127--12710179 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
12710117 TTATATATTT
12710127 TAAATTT-TTTAAA-ATA
1 TAAATTTATTTAAATATA
*
12710143 -AAATAATTATTT-TATATA
1 TAAAT--TTATTTAAATATA
12710161 TAAATTTATTTAAATATA
1 TAAATTTATTTAAATATA
12710179 T
1 T
12710180 TAAAAATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
15 4 0.14
17 9 0.31
18 12 0.41
19 4 0.14
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TAAATTTATTTAAATATA
Found at i:12712173 original size:30 final size:30
Alignment explanation
Indices: 12712134--12712207 Score: 96
Period size: 30 Copynumber: 2.5 Consensus size: 30
12712124 AAAATTTAAT
12712134 ATTTA-ATTTATTTAAAATCATTAAATATA
1 ATTTATATTTATTTAAAATCATTAAATATA
* * *
12712163 ATTTATATTTATTTGAGATTATTAAATATA
1 ATTTATATTTATTTAAAATCATTAAATATA
* *
12712193 ATTTGTAGTTATTTA
1 ATTTATATTTATTTA
12712208 CATGAATTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
29 5 0.13
30 33 0.87
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.53
Consensus pattern (30 bp):
ATTTATATTTATTTAAAATCATTAAATATA
Found at i:12713226 original size:12 final size:12
Alignment explanation
Indices: 12713209--12713252 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
12713199 AAAATATAAA
12713209 ATAAATTTTTTT
1 ATAAATTTTTTT
*
12713221 ATAAATTTATTT
1 ATAAATTTTTTT
12713233 AT-AATTTTTATT
1 ATAAATTTTT-TT
12713245 A-AAATTTT
1 ATAAATTTT
12713253 AAATCATATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 6 0.21
12 22 0.79
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
ATAAATTTTTTT
Found at i:12721655 original size:13 final size:12
Alignment explanation
Indices: 12721637--12721687 Score: 59
Period size: 13 Copynumber: 4.2 Consensus size: 12
12721627 TTAATAATTA
12721637 AAAATATGATAT
1 AAAATATGATAT
*
12721649 AATAATACGATAT
1 AA-AATATGATAT
12721662 -AAATATGATAT
1 AAAATATGATAT
*
12721673 GAAAATATAATAT
1 -AAAATATGATAT
12721686 AA
1 AA
12721688 TAACGACACG
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
11 9 0.27
12 5 0.15
13 19 0.58
ACGTcount: A:0.59, C:0.02, G:0.08, T:0.31
Consensus pattern (12 bp):
AAAATATGATAT
Found at i:12721685 original size:24 final size:24
Alignment explanation
Indices: 12721638--12721687 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
12721628 TAATAATTAA
*
12721638 AAATATGATATAATAATACGATAT
1 AAATATGATATAATAATACAATAT
*
12721662 AAATATGATATGAA-AATATAATAT
1 AAATATGATAT-AATAATACAATAT
12721686 AA
1 AA
12721688 TAACGACACG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 21 0.91
25 2 0.09
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.32
Consensus pattern (24 bp):
AAATATGATATAATAATACAATAT
Found at i:12725552 original size:23 final size:23
Alignment explanation
Indices: 12725522--12725568 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
12725512 TTTGGTCAAG
12725522 AAAAAACAGATGTAAGAGAATGT
1 AAAAAACAGATGTAAGAGAATGT
12725545 AAAAAACAGATGTAAGAGAATGT
1 AAAAAACAGATGTAAGAGAATGT
12725568 A
1 A
12725569 TCTTTAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.57, C:0.04, G:0.21, T:0.17
Consensus pattern (23 bp):
AAAAAACAGATGTAAGAGAATGT
Found at i:12735164 original size:20 final size:20
Alignment explanation
Indices: 12735139--12735191 Score: 65
Period size: 22 Copynumber: 2.6 Consensus size: 20
12735129 AACGATTGTG
*
12735139 TATTTATATTATATAAAATT
1 TATTTATATTATATAAAAAT
12735159 TATTTATATTTTATATAAAAAT
1 TATTTATA--TTATATAAAAAT
12735181 TA--TATATTATA
1 TATTTATATTATA
12735192 ATTTATATTG
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
18 5 0.17
20 12 0.40
22 13 0.43
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TATTTATATTATATAAAAAT
Found at i:12735305 original size:24 final size:24
Alignment explanation
Indices: 12735278--12735328 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
12735268 TTATATCACT
** *
12735278 TTTATATTTTATTTTTATATGATA
1 TTTATATCATATTATTATATGATA
*
12735302 TTTATATCATATTATTATATTATA
1 TTTATATCATATTATTATATGATA
12735326 TTT
1 TTT
12735329 TAAATTTTCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (24 bp):
TTTATATCATATTATTATATGATA
Found at i:12735708 original size:21 final size:20
Alignment explanation
Indices: 12735684--12735730 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
12735674 AATATAATTT
*
12735684 AATATTTTAATAAAAATTATA
1 AATATTTTAAT-AAAATTAAA
*
12735705 AATAAATTTAATAAAATTAAA
1 AAT-ATTTTAATAAAATTAAA
12735726 AATAT
1 AATAT
12735731 ATATTTTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 1 0.05
21 14 0.64
22 7 0.32
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
AATATTTTAATAAAATTAAA
Found at i:12735717 original size:22 final size:21
Alignment explanation
Indices: 12735689--12735729 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
12735679 AATTTAATAT
*
12735689 TTTAATAAAAATTATAAATAAA
1 TTTAAT-AAAATTAAAAATAAA
12735711 TTTAATAAAATTAAAAATA
1 TTTAATAAAATTAAAAATA
12735730 TATATTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (21 bp):
TTTAATAAAATTAAAAATAAA
Found at i:12741113 original size:13 final size:14
Alignment explanation
Indices: 12741087--12741113 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
12741077 ATTTGTTTCA
12741087 AAAAAATGATTTTT
1 AAAAAATGATTTTT
12741101 AAAAAATGATTTT
1 AAAAAATGATTTT
12741114 CATATTTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (14 bp):
AAAAAATGATTTTT
Found at i:12741317 original size:16 final size:18
Alignment explanation
Indices: 12741292--12741348 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
12741282 AGTTTTGAGT
*
12741292 ATAATTTTAC-TT-ATAA
1 ATAATCTTACATTAATAA
12741308 ATAATCTTACATTAATAA
1 ATAATCTTACATTAATAA
*
12741326 ATAAT-ATACTATTAATAA
1 ATAATCTTAC-ATTAATAA
12741344 ATAAT
1 ATAAT
12741349 ATTATAATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
16 9 0.25
17 5 0.14
18 22 0.61
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (18 bp):
ATAATCTTACATTAATAA
Found at i:12741349 original size:18 final size:17
Alignment explanation
Indices: 12741304--12741350 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 17
12741294 AATTTTACTT
*
12741304 ATAAATAATCTTACATTA
1 ATAAATAAT-ATACATTA
12741322 ATAAATAATATACTATTA
1 ATAAATAATATAC-ATTA
12741340 ATAAATAATAT
1 ATAAATAATAT
12741351 TATAATATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 3 0.11
18 24 0.89
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.38
Consensus pattern (17 bp):
ATAAATAATATACATTA
Found at i:12741388 original size:23 final size:23
Alignment explanation
Indices: 12741339--12741388 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
12741329 ATATACTATT
* * *
12741339 AATAAATAATATTATAATATATT
1 AATAAATAATATAAGAATATATA
12741362 AATAAATAATATAAAGAATA-ATA
1 AATAAATAATAT-AAGAATATATA
12741385 AATA
1 AATA
12741389 GTTTGACTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 18 0.78
24 5 0.22
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (23 bp):
AATAAATAATATAAGAATATATA
Found at i:12741532 original size:25 final size:26
Alignment explanation
Indices: 12741474--12741532 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
12741464 TATATTAGTA
*
12741474 ATTTTAATAATAAATAATTTCAATAT
1 ATTTTAATAATAAACAATTTCAATAT
**
12741500 ATTTTAATAATAAACAATTTTTA-AT
1 ATTTTAATAATAAACAATTTCAATAT
12741525 ATTTTAAT
1 ATTTTAAT
12741533 GTTATATTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 10 0.33
26 20 0.67
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.49
Consensus pattern (26 bp):
ATTTTAATAATAAACAATTTCAATAT
Found at i:12745045 original size:13 final size:13
Alignment explanation
Indices: 12745029--12745318 Score: 103
Period size: 13 Copynumber: 22.0 Consensus size: 13
12745019 AATAATATAC
12745029 TATTAATATAATA
1 TATTAATATAATA
12745042 TATTAATAAATAATA
1 TATTAAT--ATAATA
*
12745057 TATTATTATAATA
1 TATTAATATAATA
* *
12745070 T-TT-ATGTAAAA
1 TATTAATATAATA
12745081 TAATTAATA-AA-A
1 T-ATTAATATAATA
*
12745093 -ATTATTATAAGTAAA
1 TATTAATATAA-T--A
*
12745108 TATT-ATATTAACA
1 TATTAATA-TAATA
12745121 TATTAATATCAATAAA
1 TATTAATAT-AAT--A
* *
12745137 TAATATTATAATA
1 TATTAATATAATA
12745150 TATTAATAAATAATA
1 TATTAAT--ATAATA
*
12745165 TACTACTGATATAATA
1 TA-T--TAATATAATA
12745181 TATTAATA-AATAA
1 TATTAATATAAT-A
12745194 TATT-ATATTAATA
1 TATTAATA-TAATA
* ** *
12745207 AAAAAATATAACA
1 TATTAATATAATA
* *
12745220 -ATAAATATTAT-
1 TATTAATATAATA
12745231 TAATTTAAT-TAATAAA
1 T-A-TTAATATAAT--A
*
12745247 TATTAAAATAATA
1 TATTAATATAATA
12745260 TATT-AT-TAATA
1 TATTAATATAATA
* *
12745271 -AATAATAT-A-C
1 TATTAATATAATA
12745281 TATTAATATAATA
1 TATTAATATAATA
12745294 TATTAATA-AATA
1 TATTAATATAATA
12745306 TTATTAATA-AATA
1 -TATTAATATAATA
12745319 ATTTCATAAT
Statistics
Matches: 209, Mismatches: 30, Indels: 76
0.66 0.10 0.24
Matches are distributed among these distances:
10 8 0.04
11 23 0.11
12 24 0.11
13 74 0.35
14 21 0.10
15 32 0.15
16 24 0.11
18 3 0.01
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.42
Consensus pattern (13 bp):
TATTAATATAATA
Found at i:12745110 original size:40 final size:40
Alignment explanation
Indices: 12745038--12745204 Score: 121
Period size: 40 Copynumber: 4.0 Consensus size: 40
12745028 CTATTAATAT
*
12745038 AATATATTAATAAATAATATATTATTATAATATT-TATGTAA
1 AATA-ATTAATAAATAATATATTATAATAATATTATAT-TAA
12745079 AATAATTAATAAA-AAT-TATTATAAGTAAATATTATATTAA
1 AATAATTAATAAATAATATATTATAA-T-AATATTATATTAA
* *
12745119 CAT-ATTAATATCAATAAATAATATTATAAT-ATATTA-ATAAA
1 AATAATTAATA--AAT-AAT-ATATTATAATAATATTATATTAA
* * *
12745160 TAATATACTACTGATATAATATATTAATAAATAATATTATATTAA
1 -AATA-ATTAAT-AAATAATATATT-AT-AATAATATTATATTAA
12745205 TAAAAAAATA
Statistics
Matches: 101, Mismatches: 8, Indels: 30
0.73 0.06 0.22
Matches are distributed among these distances:
38 7 0.07
39 11 0.11
40 20 0.20
41 18 0.18
42 13 0.13
43 8 0.08
44 11 0.11
45 13 0.13
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (40 bp):
AATAATTAATAAATAATATATTATAATAATATTATATTAA
Found at i:12745247 original size:139 final size:143
Alignment explanation
Indices: 12745009--12745305 Score: 340
Period size: 139 Copynumber: 2.1 Consensus size: 143
12744999 TAAATAATAT
* ***
12745009 TATATTAATAAATAATATACTATTAATATAATATATTAATAAATAATATATTATTATAATATTTA
1 TATATTAATAAATAATATACTACTAATATAATATATTAATAAATAATATATTATTATAATAAAAA
* * * * * *
12745074 TGTAAAATAATTAATAAAAATTATTATAAGTAAATATTATATTAACATATTAAT-ATCAATAA-A
66 TATAAAATAAATAATAAAAATTAATATAAGTAAATATTAAAATAACATATTAATAATAAATAATA
*
12745137 TA-A-TATTATAA
131 TACATTAATATAA
*
12745148 TATATTAATAAATAATATACTACTGATATAATATATTAATAAATAATAT-TATATTAATAA-AAA
1 TATATTAATAAATAATATACTACTAATATAATATATTAATAAATAATATAT-TATT-ATAATAAA
* * * * *
12745211 AATATAACAATAAATATTATTAATTTAAT-TAA-TAAATATTAAAATAATATATTATTAATAAAT
64 AATATAA-AATAAATAATA-AAAATTAATATAAGTAAATATTAAAATAACATATTAATAATAAAT
12745274 AATATACTATTAATATAA
127 AATATAC-ATTAATATAA
12745292 TATATTAATAAATA
1 TATATTAATAAATA
12745306 TTATTAATAA
Statistics
Matches: 132, Mismatches: 17, Indels: 13
0.81 0.10 0.08
Matches are distributed among these distances:
138 1 0.01
139 77 0.58
140 23 0.17
141 9 0.07
143 1 0.01
144 21 0.16
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.41
Consensus pattern (143 bp):
TATATTAATAAATAATATACTACTAATATAATATATTAATAAATAATATATTATTATAATAAAAA
TATAAAATAAATAATAAAAATTAATATAAGTAAATATTAAAATAACATATTAATAATAAATAATA
TACATTAATATAA
Found at i:12746111 original size:60 final size:59
Alignment explanation
Indices: 12745869--12746362 Score: 446
Period size: 60 Copynumber: 8.5 Consensus size: 59
12745859 TGCCTTTATA
* * * * *
12745869 CAAGAAAACTTGATACTTTCAACTTTTCTTTAAAAATACATTTTTG-AATTTTCATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATACCTTTTTGAAATTTTTATTTT
* * * * **
12745927 CAAGGAAAGTTGACACTTTTAACTTTTCCTCAAAAATA--TTTTT--TTTTTTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATACCTTTTTGAAATTTTTATTTT
* * * *
12745982 CAA-AGAAAATTGATACTTACAACTTTTCCTTAAAAAT-GCTTTTTAAAATTTTTATTTT
1 CAAGA-AAAATTGATACTTTCAACTTTTCCTCAAAAATACCTTTTTGAAATTTTTATTTT
* * *
12746040 CATA-AAAAATTGATATTTTTAATTTTTCCTCAAAAATACCTCTTTTGAAATTTTTATTTT
1 CA-AGAAAAATTGATACTTTCAACTTTTCCTCAAAAATACCT-TTTTGAAATTTTTATTTT
*
12746100 CAAGAAAAATTGATACTTTCAACTTTTCTTC-AAAATACCCTTTTTCGAAATTTTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATA-CCTTTTT-GAAATTTTTATTTT
* * * ** *
12746160 CAAGGAAAACTT-ATACATTCAA-TTTTTCTCAAAAATATTTTTTTTGAAATTTTTGTTTT
1 CAA-GAAAAATTGATACTTTCAACTTTTCCTCAAAAATA-CCTTTTTGAAATTTTTATTTT
* * * ***
12746219 TAAGAAAAATTGATACTTTCAACTTTTCTTTAAAAATTGTTTTTTTGAAATTTTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAA-TACCTTTTTGAAATTTTTATTTT
* * * * *
12746279 CAATAAAAATTAATACTTTCAACTTTTCCT-AAAAA-A---ATTT-AAAATTTTAATTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATACCTTTTTGAAATTTTTATTTT
* *
12746332 CTAAGAAAAATTGATACTTTTAAATTTTCCT
1 C-AAGAAAAATTGATACTTTCAACTTTTCCT
12746363 AGAAATATTT
Statistics
Matches: 363, Mismatches: 56, Indels: 38
0.79 0.12 0.08
Matches are distributed among these distances:
53 12 0.03
54 28 0.08
55 39 0.11
56 10 0.03
58 78 0.21
59 50 0.14
60 138 0.38
61 8 0.02
ACGTcount: A:0.36, C:0.12, G:0.05, T:0.47
Consensus pattern (59 bp):
CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATACCTTTTTGAAATTTTTATTTT
Found at i:12746224 original size:119 final size:116
Alignment explanation
Indices: 12745869--12746360 Score: 451
Period size: 119 Copynumber: 4.2 Consensus size: 116
12745859 TGCCTTTATA
* * *
12745869 CAAGAAAACTTGATACTTTCAACTTTTCTTTAAAAATACATTTTTG-AATTTTCATTTTCAAGG-
1 CAAGAAAAATTGATACTTTCAACTTTTC-TTAAAAAT-CCTTTTTGAAATTTTTATTTTCAAGGA
* * *
12745932 AAAGTTGACACTTTTAACTTTTCCTCAAAAATATTTTTTT----TTTTTATTTT
64 AAAATTGATACTTTTAA-TTTTTCTCAAAAATATTTTTTTGAAATTTTTATTTT
* * *
12745982 CAA-AGAAAATTGATACTTACAACTTTTCCTTAAAAATGCTTTTTAAAATTTTTATTTTCATA--
1 CAAGA-AAAATTGATACTTTCAACTTTT-CTTAAAAATCCTTTTTGAAATTTTTATTTTCA-AGG
* * *
12746044 AAAAATTGATATTTTTAATTTTTCCTCAAAAATACCTCTTTTGAAATTTTTATTTT
63 AAAAATTGATACTTTTAATTTTT-CTCAAAAATA-TTTTTTTGAAATTTTTATTTT
*
12746100 CAAGAAAAATTGATACTTTCAACTTTTCTTCAAAATACCCTTTTTCGAAATTTTTATTTTCAAGG
1 CAAGAAAAATTGATACTTTCAACTTTTCTT-AAAA-ATCCTTTTT-GAAATTTTTATTTTCAAGG
* * * *
12746165 AAAACTT-ATACATTCAATTTTTCTCAAAAATATTTTTTTTGAAATTTTTGTTTT
63 AAAAATTGATACTTTTAATTTTTCTCAAAAATA-TTTTTTTGAAATTTTTATTTT
* ** *
12746219 TAAGAAAAATTGATACTTTCAACTTTTCTTTAAAAATTGTTTTTTTGAAATTTTTATTTTCAA-T
1 CAAGAAAAATTGATACTTTCAACTTTTC-TTAAAAA-T-CCTTTTTGAAATTTTTATTTTCAAGG
* * * * * *
12746283 AAAAATTAATACTTTCAACTTTTC-CTAAAAA-A---ATTT-AAAATTTTAATTT
63 AAAAATTGATACTTTTAATTTTTCTC-AAAAATATTTTTTTGAAATTTTTATTTT
* *
12746332 CTAAGAAAAATTGATACTTTTAAATTTTC
1 C-AAGAAAAATTGATACTTTCAACTTTTC
12746361 CTAGAAATAT
Statistics
Matches: 317, Mismatches: 39, Indels: 45
0.79 0.10 0.11
Matches are distributed among these distances:
112 10 0.03
113 78 0.25
114 35 0.11
117 3 0.01
118 47 0.15
119 104 0.33
120 34 0.11
121 6 0.02
ACGTcount: A:0.36, C:0.12, G:0.05, T:0.47
Consensus pattern (116 bp):
CAAGAAAAATTGATACTTTCAACTTTTCTTAAAAATCCTTTTTGAAATTTTTATTTTCAAGGAAA
AATTGATACTTTTAATTTTTCTCAAAAATATTTTTTTGAAATTTTTATTTT
Found at i:12746352 original size:26 final size:25
Alignment explanation
Indices: 12746270--12746354 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 25
12746260 TTTTTGAAAT
*
12746270 TTTTATTTTC-AATAAAAATTAATAC
1 TTTTAATTTCTAA-AAAAATTAATAC
* *
12746295 TTTCAACTTTTCCTAAAAAAATTTAA-AA
1 TTTTAA--TTT-CTAAAAAAA-TTAATAC
*
12746323 TTTTAATTTCTAAGAAAAATTGATAC
1 TTTTAATTTCTAA-AAAAATTAATAC
12746349 TTTTAA
1 TTTTAA
12746355 ATTTTCCTAG
Statistics
Matches: 47, Mismatches: 6, Indels: 13
0.71 0.09 0.20
Matches are distributed among these distances:
25 11 0.23
26 15 0.32
27 3 0.06
28 12 0.26
29 6 0.13
ACGTcount: A:0.44, C:0.09, G:0.02, T:0.45
Consensus pattern (25 bp):
TTTTAATTTCTAAAAAAATTAATAC
Found at i:12746366 original size:28 final size:28
Alignment explanation
Indices: 12746283--12746367 Score: 79
Period size: 28 Copynumber: 3.1 Consensus size: 28
12746273 TATTTTCAAT
* * *
12746283 AAAAATTAATACTTTCAACTTTTCCTAA
1 AAAAATTAATACTTTTAAATTTTCCTAG
*
12746311 AAAAATTTAA-AATTTT-AA-TTT-CTAAG
1 AAAAA-TTAATACTTTTAAATTTTCCT-AG
*
12746337 AAAAATTGATACTTTTAAATTTTCCTAG
1 AAAAATTAATACTTTTAAATTTTCCTAG
12746365 AAA
1 AAA
12746368 TATTTTTTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
25 5 0.11
26 14 0.31
27 3 0.07
28 17 0.38
29 6 0.13
ACGTcount: A:0.46, C:0.11, G:0.04, T:0.40
Consensus pattern (28 bp):
AAAAATTAATACTTTTAAATTTTCCTAG
Found at i:12746452 original size:4 final size:4
Alignment explanation
Indices: 12746443--12746501 Score: 54
Period size: 4 Copynumber: 15.5 Consensus size: 4
12746433 CATTTTAATC
**
12746443 AATA AATA AATA AGCA AA-A AATTA AA-A AATA AATA AATA AA-A AA-A
1 AATA AATA AATA AATA AATA AA-TA AATA AATA AATA AATA AATA AATA
*
12746488 CATA AATA AATA AA
1 AATA AATA AATA AA
12746502 AAAACCTTGG
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
3 11 0.24
4 32 0.70
5 3 0.07
ACGTcount: A:0.76, C:0.03, G:0.02, T:0.19
Consensus pattern (4 bp):
AATA
Found at i:12746492 original size:14 final size:14
Alignment explanation
Indices: 12746443--12746504 Score: 54
Period size: 15 Copynumber: 4.1 Consensus size: 14
12746433 CATTTTAATC
12746443 AATAAATAAATAAGCAA
1 AATAAATAAA-AA--AA
*
12746460 AA-AATTAAAAAATA
1 AATAAATAAAAAA-A
12746474 AATAAATAAAAAAA
1 AATAAATAAAAAAA
*
12746488 CATAAATAAATAAAA
1 AATAAATAAA-AAAA
12746503 AA
1 AA
12746505 ACCTTGGCTT
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
13 1 0.03
14 13 0.34
15 16 0.42
16 6 0.16
17 2 0.05
ACGTcount: A:0.77, C:0.03, G:0.02, T:0.18
Consensus pattern (14 bp):
AATAAATAAAAAAA
Found at i:12746492 original size:18 final size:18
Alignment explanation
Indices: 12746466--12746506 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
12746456 GCAAAAAATT
12746466 AAAAA-ATAAATAAATAA
1 AAAAACATAAATAAATAA
12746483 AAAAACATAAATAAATAA
1 AAAAACATAAATAAATAA
12746501 AAAAAC
1 AAAAAC
12746507 CTTGGCTTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.80, C:0.05, G:0.00, T:0.15
Consensus pattern (18 bp):
AAAAACATAAATAAATAA
Found at i:12747743 original size:169 final size:169
Alignment explanation
Indices: 12747465--12747800 Score: 460
Period size: 169 Copynumber: 2.0 Consensus size: 169
12747455 GACTTAGACT
* * * * * * *
12747465 GAACCGAAGTCTGAAATGAATAACTTGGACTGAACTAAAGAAATATCTGACATAGGTCAAAATCT
1 GAACCAAAGTCTGAAAAGAATAAATTGGACTCAACCAAAGAAAGATCTGACATAGGTCAAAATCC
* * * * *
12747530 AAAACAAAATGACTTTGACTGAACTAAAGTTTAAAATGAATAACTTGGATTAAGCCAAAAAATGA
66 AAAACAAAATGACTTAGACTGAACCAAAGTCTAAAATAAATAACTTGGACTAAGCCAAAAAA-GA
* * *
12747595 TTTGACATAGGCCAAAATCCAAAATGAAATGACTTGGAAA
130 TTTGACATAGGCCAAAACCCAAAATAAAATGACATGGAAA
* * *
12747635 GAACCAAAGTCTTAAAAGAATAAATTGGACTCAGCCAAAGAAAGATCT-AGCATAGG-CTAAATC
1 GAACCAAAGTCTGAAAAGAATAAATTGGACTCAACCAAAGAAAGATCTGA-CATAGGTCAAAATC
*
12747698 CAAAACAAAATGACTTAGATTGAACCAAAGTCTAAAATAAATAACTTGGACTAAGCCAAAAAAGA
65 CAAAACAAAATGACTTAGACTGAACCAAAGTCTAAAATAAATAACTTGGACTAAGCCAAAAAAGA
*
12747763 TTTGGCATAGGCCAAAACCCAAAATAAAATGACATGGA
130 TTTGACATAGGCCAAAACCCAAAATAAAATGACATGGA
12747801 TTGAATCAAA
Statistics
Matches: 145, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
168 36 0.25
169 63 0.43
170 46 0.32
ACGTcount: A:0.48, C:0.15, G:0.16, T:0.21
Consensus pattern (169 bp):
GAACCAAAGTCTGAAAAGAATAAATTGGACTCAACCAAAGAAAGATCTGACATAGGTCAAAATCC
AAAACAAAATGACTTAGACTGAACCAAAGTCTAAAATAAATAACTTGGACTAAGCCAAAAAAGAT
TTGACATAGGCCAAAACCCAAAATAAAATGACATGGAAA
Found at i:12747803 original size:84 final size:85
Alignment explanation
Indices: 12747452--12747810 Score: 379
Period size: 85 Copynumber: 4.2 Consensus size: 85
12747442 ATTTGAGATG
* * * * * *
12747452 AATGACTTAGACTGAACCGAAGTCTGAAATGAATAACTTGGACTGAA-CTAAAGAAATATCTGAC
1 AATGACTTGGATTGAACCAAAGTCTAAAATGAATAACTTGGACT-AAGCCAAAGAAAGATCTGAC
* *
12747516 ATAGGTCAAAATCTAAAACAA
65 ATAGGCCAAAATCCAAAACAA
* * * * * *
12747537 AATGACTTTGACTGAACTAAAGTTTAAAATGAATAACTTGGATTAAGCCAAA-AAATGATTTGAC
1 AATGACTTGGATTGAACCAAAGTCTAAAATGAATAACTTGGACTAAGCCAAAGAAA-GATCTGAC
**
12747601 ATAGGCCAAAATCCAAAATGA
65 ATAGGCCAAAATCCAAAACAA
** * *
12747622 AATGACTTGGAAAGAACCAAAGTCTTAAAA-GAATAAATTGGACTCAGCCAAAGAAAGATCT-AG
1 AATGACTTGGATTGAACCAAAGTC-TAAAATGAATAACTTGGACTAAGCCAAAGAAAGATCTGA-
*
12747685 CATAGG-CTAAATCCAAAACAA
64 CATAGGCCAAAATCCAAAACAA
* * * *
12747706 AATGACTTAGATTGAACCAAAGTCTAAAATAAATAACTTGGACTAAGCCAAA-AAAGATTTGGCA
1 AATGACTTGGATTGAACCAAAGTCTAAAATGAATAACTTGGACTAAGCCAAAGAAAGATCTGACA
* *
12747770 TAGGCCAAAACCCAAAATAA
66 TAGGCCAAAATCCAAAACAA
* *
12747790 AATGACATGGATTGAATCAAA
1 AATGACTTGGATTGAACCAAA
12747811 AAATGATTTG
Statistics
Matches: 227, Mismatches: 39, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
83 18 0.08
84 88 0.39
85 113 0.50
86 8 0.04
ACGTcount: A:0.47, C:0.15, G:0.16, T:0.22
Consensus pattern (85 bp):
AATGACTTGGATTGAACCAAAGTCTAAAATGAATAACTTGGACTAAGCCAAAGAAAGATCTGACA
TAGGCCAAAATCCAAAACAA
Found at i:12747846 original size:138 final size:140
Alignment explanation
Indices: 12747693--12747947 Score: 372
Period size: 138 Copynumber: 1.8 Consensus size: 140
12747683 AGCATAGGCT
* * **
12747693 AAATCCAAAACAAAATGACTT-AGATTGAACCAAAGTCTAAAATAAATAACTTGGACTAAGCCAA
1 AAATCCAAAACAAAATGACTTGA-ACTGAACCAAAGTCTAAAATAAATAACTTAGACTAAAACAA
* * * * *
12747757 A-AAAGATTTGGCATAGGCCAAAAC-CCAAAATAAAATGACATGGATTGAATCAAAAAATGATTT
65 AGAAAGATCTAGCATAGGCCAAAACGCAAAAACAAAATGACATGAATTGAATCAAAAAATGATTT
12747820 GGTATATGTCA
130 GGTATATGTCA
* *
12747831 AAATCCAAAACAAAATGACTTGAACTGAACCAAAGTCTGAAATAAGTAACTTAGACTAAAACAAA
1 AAATCCAAAACAAAATGACTTGAACTGAACCAAAGTCTAAAATAAATAACTTAGACTAAAACAAA
*
12747896 GAAAGATCTAGCATAGGCCAAAACGCAAAAACAAAATGACTTGAATTGAATC
66 GAAAGATCTAGCATAGGCCAAAACGCAAAAACAAAATGACATGAATTGAATC
12747948 GAAGTCTGAA
Statistics
Matches: 102, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
138 57 0.56
139 22 0.22
140 23 0.23
ACGTcount: A:0.50, C:0.16, G:0.14, T:0.20
Consensus pattern (140 bp):
AAATCCAAAACAAAATGACTTGAACTGAACCAAAGTCTAAAATAAATAACTTAGACTAAAACAAA
GAAAGATCTAGCATAGGCCAAAACGCAAAAACAAAATGACATGAATTGAATCAAAAAATGATTTG
GTATATGTCA
Found at i:12748895 original size:52 final size:53
Alignment explanation
Indices: 12748787--12748895 Score: 125
Period size: 53 Copynumber: 2.1 Consensus size: 53
12748777 TCTTTTCCCA
* * * *
12748787 TTTTTTAAACTCAAAATGCCTTTTATAGGTTTTCAATTTTAGCTCTTTTTTTT
1 TTTTTTAAACTCAAAATGCCTTTTACAGGTTTTCAATTTCAACTCTTTTTTGT
* *
12748840 TTTTTTAAACTC-AAAT-CTCTCTTTACATGTTTTTAATTTCAACT-TTTTTTGT
1 TTTTTTAAACTCAAAATGC-CT-TTTACAGGTTTTCAATTTCAACTCTTTTTTGT
12748892 TTTT
1 TTTT
12748896 AAGAGAAATA
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
51 1 0.02
52 17 0.35
53 30 0.62
ACGTcount: A:0.22, C:0.14, G:0.06, T:0.59
Consensus pattern (53 bp):
TTTTTTAAACTCAAAATGCCTTTTACAGGTTTTCAATTTCAACTCTTTTTTGT
Found at i:12751651 original size:33 final size:33
Alignment explanation
Indices: 12751614--12751722 Score: 99
Period size: 33 Copynumber: 3.5 Consensus size: 33
12751604 CCTCAAAAAT
12751614 ATATTTTTAAATTTTTATTTTCAAGAAAAATTA
1 ATATTTTTAAATTTTTATTTTCAAGAAAAATTA
* *
12751647 ATATTTTT-AA-CTTT-TCTTC---AAAAA-TA
1 ATATTTTTAAATTTTTATTTTCAAGAAAAATTA
*
12751673 CAT-TTTTTGAAATTTTTATTTTCAAGAAAATTTA
1 -ATATTTTT-AAATTTTTATTTTCAAGAAAAATTA
* *
12751707 ATACTTTTCAATTTTT
1 ATATTTTTAAATTTTT
12751723 TCTCAAAAAT
Statistics
Matches: 59, Mismatches: 7, Indels: 20
0.69 0.08 0.23
Matches are distributed among these distances:
26 7 0.12
27 7 0.12
28 2 0.03
29 3 0.05
30 8 0.14
31 3 0.05
32 2 0.03
33 21 0.36
34 6 0.10
ACGTcount: A:0.37, C:0.07, G:0.03, T:0.53
Consensus pattern (33 bp):
ATATTTTTAAATTTTTATTTTCAAGAAAAATTA
Found at i:12751709 original size:60 final size:60
Alignment explanation
Indices: 12751578--12751921 Score: 362
Period size: 60 Copynumber: 5.8 Consensus size: 60
12751568 AGCCTTTATA
* * * *
12751578 CAAG-AAAATTGATACTTTTAACTTTTCCTCAAAAATATA-TTTTT-AAATTTTTATTTT
1 CAAGAAAAATTAATACTTTCAACTTTTCTTCAAAAATACATTTTTTGAAATTTTTATTTT
* *
12751635 CAAGAAAAATTAATATTTTTAACTTTTCTTCAAAAATACATTTTTTGAAATTTTTATTTT
1 CAAGAAAAATTAATACTTTCAACTTTTCTTCAAAAATACATTTTTTGAAATTTTTATTTT
* * * *
12751695 CAAGAAAATTTAATACTTTTCAA-TTTTTTCTCAAAAAT--GTATTTTGAAATTTTTATTTT
1 CAAGAAAAATTAATAC-TTTCAACTTTTCT-TCAAAAATACATTTTTTGAAATTTTTATTTT
* * * * *
12751754 TAAAAAAAATTGATACTTTCAACTTTTCTTCAAAAATACCTTTTTTGAAAATTTTATTTT
1 CAAGAAAAATTAATACTTTCAACTTTTCTTCAAAAATACATTTTTTGAAATTTTTATTTT
* * * * **
12751814 TAAGAAAAATTAATATTTTTAACTTTT-TCTCAAAAATACCCTTTTTCAAAATTTTTATTTT
1 CAAGAAAAATTAATACTTTCAACTTTTCT-TCAAAAATA-CATTTTTTGAAATTTTTATTTT
* * *
12751875 CAA-AGAAAACTAATACTTTCAACTTTTTTTCAAAAATATCTTTTTTT
1 CAAGA-AAAATTAATACTTTCAACTTTTCTTCAAAAATA-CATTTTTT
12751922 TTTCAAAGGT
Statistics
Matches: 243, Mismatches: 32, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
57 4 0.02
58 45 0.19
59 42 0.17
60 83 0.34
61 68 0.28
62 1 0.00
ACGTcount: A:0.38, C:0.11, G:0.03, T:0.49
Consensus pattern (60 bp):
CAAGAAAAATTAATACTTTCAACTTTTCTTCAAAAATACATTTTTTGAAATTTTTATTTT
Found at i:12751799 original size:119 final size:117
Alignment explanation
Indices: 12751578--12751920 Score: 445
Period size: 119 Copynumber: 2.9 Consensus size: 117
12751568 AGCCTTTATA
* * * *
12751578 CAAGAAAATTGATACTTTTAACTTTTCCTCAAAAATATATTTTTAAATTTTTATTTTCAAGAAAA
1 CAAGAAAATTAATACTTTTAACTTTTTCTCAAAAATATATTTTAAAATTTTTATTTTCAAAAAAA
* * * *
12751643 ATTAATATTTTTAACTTTTCTTCAAAAATACATTTTTTGAAATTTTTATTTT
66 ATTAATACTTTCAACTTTTCTTCAAAAATACCTTTTTTGAAAATTTTATTTT
* * * *
12751695 CAAGAAAATTTAATACTTTTCAATTTTTTCTCAAAAATGTATTTTGAAATTTTTATTTTTAAAAA
1 CAAGAAAA-TTAATACTTTT-AACTTTTTCTCAAAAATATATTTTAAAATTTTTATTTTCAAAAA
*
12751760 AAATTGATACTTTCAACTTTTCTTCAAAAATACCTTTTTTGAAAATTTTATTTT
64 AAATTAATACTTTCAACTTTTCTTCAAAAATACCTTTTTTGAAAATTTTATTTT
* *
12751814 TAAGAAAAATTAATATTTTTAACTTTTTCTCAAAAATACCCT-TTTTCAAAATTTTTATTTTCAA
1 CAAG-AAAATTAATACTTTTAACTTTTTCTCAAAAATA---TATTTT-AAAATTTTTATTTTCAA
* * * *
12751878 AGAAAACTAATACTTTCAACTTTTTTTCAAAAATATCTTTTTT
61 AAAAAATTAATACTTTCAACTTTTCTTCAAAAATACCTTTTTT
12751921 TTTTCAAAGG
Statistics
Matches: 196, Mismatches: 23, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
117 8 0.04
118 26 0.13
119 100 0.51
120 8 0.04
121 54 0.28
ACGTcount: A:0.38, C:0.11, G:0.03, T:0.48
Consensus pattern (117 bp):
CAAGAAAATTAATACTTTTAACTTTTTCTCAAAAATATATTTTAAAATTTTTATTTTCAAAAAAA
ATTAATACTTTCAACTTTTCTTCAAAAATACCTTTTTTGAAAATTTTATTTT
Found at i:12752571 original size:13 final size:13
Alignment explanation
Indices: 12752555--12752582 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
12752545 AAACTCTGCT
12752555 TTTATTTATTTTA
1 TTTATTTATTTTA
12752568 TTTATTTATTTTA
1 TTTATTTATTTTA
12752581 TT
1 TT
12752583 AGCCTTACTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTATTTATTTTA
Found at i:12752765 original size:16 final size:16
Alignment explanation
Indices: 12752693--12752770 Score: 52
Period size: 16 Copynumber: 4.6 Consensus size: 16
12752683 ATTAACTTAA
*
12752693 TATTTTAATATTAAATAT
1 TATTTTAATAAT-AA-AT
12752711 TATTATTAA-AATATAAT
1 TATT-TTAATAATA-AAT
*
12752728 TATTTTTTAAT-ATTAAT
1 TA--TTTTAATAATAAAT
*
12752745 AATTTTAATAATAAAT
1 TATTTTAATAATAAAT
*
12752761 TATTTCAATA
1 TATTTTAATA
12752771 TATTTTAATA
Statistics
Matches: 48, Mismatches: 6, Indels: 14
0.71 0.09 0.21
Matches are distributed among these distances:
15 7 0.15
16 13 0.27
17 9 0.19
18 13 0.27
19 6 0.12
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (16 bp):
TATTTTAATAATAAAT
Found at i:12753120 original size:21 final size:20
Alignment explanation
Indices: 12753081--12753121 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
12753071 ACCGTTAGAA
**
12753081 CAATGATAAATTTTCAATTT
1 CAATGATAAATTTAAAATTT
12753101 CAATGATCAAATTTAAAATTT
1 CAATGAT-AAATTTAAAATTT
12753122 TGCAACATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (20 bp):
CAATGATAAATTTAAAATTT
Found at i:12755716 original size:29 final size:28
Alignment explanation
Indices: 12755684--12755773 Score: 69
Period size: 30 Copynumber: 3.0 Consensus size: 28
12755674 ATATTTAAAT
12755684 TTAATAAAATTAAAAAATTATATTTTATA
1 TTAA-AAAATTAAAAAATTATATTTTATA
* *
12755713 TTAAAATAAATTATAATA-TATAATTTT-TA
1 TT-AAA-AAATTAAAAAATTAT-ATTTTATA
12755742 TTAAAAAA-TAATATAAATATAATATTTTATA
1 TTAAAAAATTAA-A-AAAT-T-ATATTTTATA
12755773 T
1 T
12755774 GATATAATTA
Statistics
Matches: 48, Mismatches: 4, Indels: 16
0.71 0.06 0.24
Matches are distributed among these distances:
26 2 0.04
27 4 0.08
28 5 0.10
29 10 0.21
30 22 0.46
31 5 0.10
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (28 bp):
TTAAAAAATTAAAAAATTATATTTTATA
Found at i:12755739 original size:30 final size:31
Alignment explanation
Indices: 12755703--12755773 Score: 87
Period size: 30 Copynumber: 2.4 Consensus size: 31
12755693 TTAAAAAATT
*
12755703 ATATTTTATATTAAAATA-AAT-TATAATAT-
1 ATATTTTATATTAAAAAATAATATA-AATATA
12755732 ATAATTTT-TATTAAAAAATAATATAAATATA
1 AT-ATTTTATATTAAAAAATAATATAAATATA
12755763 ATATTTTATAT
1 ATATTTTATAT
12755774 GATATAATTA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
29 11 0.31
30 18 0.50
31 7 0.19
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (31 bp):
ATATTTTATATTAAAAAATAATATAAATATA
Found at i:12755785 original size:29 final size:30
Alignment explanation
Indices: 12755703--12755785 Score: 91
Period size: 28 Copynumber: 2.8 Consensus size: 30
12755693 TTAAAAAATT
12755703 ATATTTTATATTAAAATAAATTATAATATATA
1 ATATTTTATA-TAAAAT-AATTATAATATATA
*
12755735 AT-TTTTATTAAAAAATAA-TATAA-ATATA
1 ATATTTTA-TATAAAATAATTATAATATATA
* *
12755763 ATATTTTATATGATATAATTATA
1 ATATTTTATATAAAATAATTATA
12755786 CGAATTATCA
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
28 14 0.32
29 14 0.32
30 2 0.05
31 10 0.23
32 4 0.09
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (30 bp):
ATATTTTATATAAAATAATTATAATATATA
Found at i:12759277 original size:63 final size:64
Alignment explanation
Indices: 12759159--12759285 Score: 166
Period size: 63 Copynumber: 2.0 Consensus size: 64
12759149 AATTAATGGC
* * * * *
12759159 CTTTGGAAAATGGAGAAAAGAAGAGACGTGTGTTTAAGGGAGTGAGTGACGTGGATATCTTTTGG
1 CTTTGGAAAATCGAGAAAAGAAGAGACG-ATGTTTAAGGGAGTGAATAACATGGATATCTTTTGG
* * *
12759224 CTTTGGCAAATCGATAAAAGAAGAGAC-ATGTTTGAGGGAGTGAATAACATGGATATCTTTTG
1 CTTTGGAAAATCGAGAAAAGAAGAGACGATGTTTAAGGGAGTGAATAACATGGATATCTTTTG
12759286 CATTTCCGCT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
63 30 0.56
65 24 0.44
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (64 bp):
CTTTGGAAAATCGAGAAAAGAAGAGACGATGTTTAAGGGAGTGAATAACATGGATATCTTTTGG
Found at i:12759468 original size:21 final size:22
Alignment explanation
Indices: 12759429--12759474 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
12759419 AATTTAAAAT
* *
12759429 TTTAGTAAAAATCACATATAAA
1 TTTAATAAAAATCAAATATAAA
*
12759451 TTTAATAAAAAT-AAATATATA
1 TTTAATAAAAATCAAATATAAA
12759472 TTT
1 TTT
12759475 CATATTTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.39
Consensus pattern (22 bp):
TTTAATAAAAATCAAATATAAA
Found at i:12762548 original size:24 final size:24
Alignment explanation
Indices: 12762504--12762549 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
12762494 TTCAAAATAA
*
12762504 ATAATTTTTAACTGTTAAAAATGG
1 ATAATTTTTAACTATTAAAAATGG
* *
12762528 ATAATTTTTATCTATTTAAAAT
1 ATAATTTTTAACTATTAAAAAT
12762550 AAACCGTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.41, C:0.04, G:0.07, T:0.48
Consensus pattern (24 bp):
ATAATTTTTAACTATTAAAAATGG
Found at i:12768846 original size:21 final size:21
Alignment explanation
Indices: 12768808--12768847 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
12768798 AATTTAAAAT
** *
12768808 TTTAATAAAATTACATATAAA
1 TTTAATAAAAACAAATATAAA
12768829 TTTAATAAAAACAAATATA
1 TTTAATAAAAACAAATATA
12768848 TGTTTCATAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (21 bp):
TTTAATAAAAACAAATATAAA
Found at i:12771854 original size:22 final size:23
Alignment explanation
Indices: 12771828--12771877 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
12771818 GATTGATAAG
12771828 AATAAAT-AATTTGTAT-AAAATA
1 AATAAATAAATTTGT-TCAAAATA
*
12771850 GATAAATAAATTTGTTCAAAATA
1 AATAAATAAATTTGTTCAAAATA
12771873 AATAA
1 AATAA
12771878 TTTTTAACTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 7 0.29
23 17 0.71
ACGTcount: A:0.58, C:0.02, G:0.06, T:0.34
Consensus pattern (23 bp):
AATAAATAAATTTGTTCAAAATA
Found at i:12771918 original size:24 final size:24
Alignment explanation
Indices: 12771864--12771922 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
12771854 AATAAATTTG
*
12771864 TTCAAAATAAATAATTTTTAACTG
1 TTCAAAATAAATAATTTTTAACTA
* * **
12771888 TTAAAAATAGATAATTTTTGTCTA
1 TTCAAAATAAATAATTTTTAACTA
12771912 TTCAAAATAAA
1 TTCAAAATAAA
12771923 CAGTTATGTC
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.41
Consensus pattern (24 bp):
TTCAAAATAAATAATTTTTAACTA
Found at i:12782206 original size:23 final size:23
Alignment explanation
Indices: 12782155--12782207 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
12782145 ATTCGATTTA
* *
12782155 ATTAA-ATTAAATAAATATATTC
1 ATTAATATTAAACAAACATATTC
**
12782177 ACAAATATTAAACAAACATATTC
1 ATTAATATTAAACAAACATATTC
12782200 ATTAATAT
1 ATTAATAT
12782208 ATATATAATG
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
22 3 0.12
23 21 0.88
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (23 bp):
ATTAATATTAAACAAACATATTC
Found at i:12782870 original size:28 final size:28
Alignment explanation
Indices: 12782826--12782890 Score: 73
Period size: 28 Copynumber: 2.3 Consensus size: 28
12782816 TTTTATTTTG
12782826 TATATTTAA-ATAATTTTTT--ATAAAAACA
1 TATA-TTAATATAATTTTTTGAAT-AAAA-A
*
12782854 TATATTAATATATTTTTTTGAATAAAAA
1 TATATTAATATAATTTTTTGAATAAAAA
12782882 TATATTAAT
1 TATATTAAT
12782891 TTTAATTAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
27 4 0.12
28 23 0.70
29 4 0.12
30 2 0.06
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.49
Consensus pattern (28 bp):
TATATTAATATAATTTTTTGAATAAAAA
Found at i:12784208 original size:16 final size:16
Alignment explanation
Indices: 12784169--12784218 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
12784159 TTTGAGAGAA
*
12784169 AAAAAAAAATAACATG
1 AAAAAAAAACAACATG
* * *
12784185 ATACAAAAACAATATG
1 AAAAAAAAACAACATG
12784201 AAAAAAAAA-AACAT-
1 AAAAAAAAACAACATG
12784215 AAAA
1 AAAA
12784219 TCGTAAATTT
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
14 4 0.15
15 4 0.15
16 19 0.70
ACGTcount: A:0.76, C:0.08, G:0.04, T:0.12
Consensus pattern (16 bp):
AAAAAAAAACAACATG
Found at i:12784665 original size:21 final size:21
Alignment explanation
Indices: 12784640--12784684 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
12784630 TTATATATGA
* *
12784640 AATTATCAAAATTTAAATTTT
1 AATTATCAAAATTAAAAATTT
* *
12784661 AATTATTAAAGTTAAAAATTT
1 AATTATCAAAATTAAAAATTT
12784682 AAT
1 AAT
12784685 ATTTTACCGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (21 bp):
AATTATCAAAATTAAAAATTT
Found at i:12785667 original size:31 final size:32
Alignment explanation
Indices: 12785629--12785690 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
12785619 AAAATATTTT
*
12785629 ATATAAAAAT-TAT-GTATTAAAATTTTTATTA
1 ATATAAAAATATATAATA-TAAAATTTTTATTA
12785660 ATATAAAAATATATAATATAAAATTTTTATT
1 ATATAAAAATATATAATATAAAATTTTTATT
12785691 TTATTAAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 10 0.36
32 16 0.57
33 2 0.07
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (32 bp):
ATATAAAAATATATAATATAAAATTTTTATTA
Found at i:12785749 original size:13 final size:15
Alignment explanation
Indices: 12785722--12785760 Score: 55
Period size: 13 Copynumber: 2.7 Consensus size: 15
12785712 TTTATTAAAA
12785722 TTTTAAATTATATTT
1 TTTTAAATTATATTT
12785737 TTTTAAA-TA-ATTT
1 TTTTAAATTATATTT
*
12785750 TTTTATATTAT
1 TTTTAAATTAT
12785761 TTTATATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 10 0.48
14 4 0.19
15 7 0.33
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTTAAATTATATTT
Found at i:12786376 original size:22 final size:24
Alignment explanation
Indices: 12786357--12786403 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 24
12786347 ATTTAAATAT
12786357 TTTAA-AAATTATATTAAAATAAA
1 TTTAATAAATTATATTAAAATAAA
*
12786380 TTTAATAAATTA-A-TAAATTAAA
1 TTTAATAAATTATATTAAAATAAA
12786402 TT
1 TT
12786404 AAACTAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 10 0.45
23 6 0.27
24 6 0.27
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
TTTAATAAATTATATTAAAATAAA
Found at i:12792442 original size:89 final size:90
Alignment explanation
Indices: 12792340--12792520 Score: 346
Period size: 89 Copynumber: 2.0 Consensus size: 90
12792330 ATAAAATATA
12792340 GCCATGAGATGTTTGTTCACATTTTCTCTACTGCTTATTGTGCATAAATGGTTATCATAAAAGTC
1 GCCATGAGATGTTTGTTCACATTTTCTCTACTGCTTATTGTGCATAAATGGTTATCATAAAAGTC
12792405 AA-AAGGAAAACCATAAAAATGGGG
66 AAGAAGGAAAACCATAAAAATGGGG
*
12792429 GCCATGAGATGTTTGTTCACATTTTCTCTTCTGCTTATTGTGCATAAATGGTTATCATAAAAGTC
1 GCCATGAGATGTTTGTTCACATTTTCTCTACTGCTTATTGTGCATAAATGGTTATCATAAAAGTC
12792494 AAGAAGGAAAACCATAAAAATGGGG
66 AAGAAGGAAAACCATAAAAATGGGG
12792519 GC
1 GC
12792521 ATTCCGAGAA
Statistics
Matches: 90, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
89 66 0.73
90 24 0.27
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (90 bp):
GCCATGAGATGTTTGTTCACATTTTCTCTACTGCTTATTGTGCATAAATGGTTATCATAAAAGTC
AAGAAGGAAAACCATAAAAATGGGG
Done.