Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25814696
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 122000 characters in sequence are not A, C, G, or T
File 73 of 126
Found at i:14713006 original size:27 final size:26
Alignment explanation
Indices: 14712953--14713023 Score: 83
Period size: 28 Copynumber: 2.7 Consensus size: 26
14712943 TATCAATAAG
*
14712953 TAATTGCATAATTTAGATAAAATATTAA
1 TAATT-CATAATTTATATAAAATATT-A
14712981 TAATTCATATATTTATATAAAA-ATTA
1 TAATTCATA-ATTTATATAAAATATTA
14713007 TATATT-ATAATTTATAT
1 TA-ATTCATAATTTATAT
14713024 CAACATAAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
25 8 0.20
26 6 0.15
27 10 0.25
28 16 0.40
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (26 bp):
TAATTCATAATTTATATAAAATATTA
Found at i:14713129 original size:124 final size:123
Alignment explanation
Indices: 14712983--14713229 Score: 458
Period size: 124 Copynumber: 2.0 Consensus size: 123
14712973 AATATTAATA
14712983 ATTCATATATTTATATAAAAATTATATATTATAATTTATATCAACATAAATTATATAAATTATAT
1 ATTCATATATTTATATAAAAATTATATATTATAATTTATATCAACATAAATTATATAAATTATAT
*
14713048 TTTTTATTTTTATTAAAATTTTAATTCATATTATTTTTATATTTTTTTACTGTATTACC
66 TTTTTATTTTTATTAAAATTTTAATTCATATTA-TTTTATAATTTTTTACTGTATTACC
* *
14713107 ATTCATATATTTATATATAAATTATATATTATAATTTATATCAACATAAATTATGTAAATTATAT
1 ATTCATATATTTATATAAAAATTATATATTATAATTTATATCAACATAAATTATATAAATTATAT
14713172 TTTTTATTTTTATTAAAATTTTAATTCATATTATTTTATAATTTTTTACTGTATTACC
66 TTTTTATTTTTATTAAAATTTTAATTCATATTATTTTATAATTTTTTACTGTATTACC
14713230 GTATTTTATT
Statistics
Matches: 120, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
123 24 0.20
124 96 0.80
ACGTcount: A:0.38, C:0.06, G:0.01, T:0.55
Consensus pattern (123 bp):
ATTCATATATTTATATAAAAATTATATATTATAATTTATATCAACATAAATTATATAAATTATAT
TTTTTATTTTTATTAAAATTTTAATTCATATTATTTTATAATTTTTTACTGTATTACC
Found at i:14714016 original size:22 final size:22
Alignment explanation
Indices: 14713991--14714034 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
14713981 GTATTGAACG
*
14713991 ATTTAAATTTATTATATTAAAT
1 ATTTAAATTTAGTATATTAAAT
**
14714013 ATTTATTTTTAGTATATTAAAT
1 ATTTAAATTTAGTATATTAAAT
14714035 TCATAATATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
ATTTAAATTTAGTATATTAAAT
Found at i:14715288 original size:19 final size:20
Alignment explanation
Indices: 14715250--14715288 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
14715240 TGTTAAAATT
*
14715250 TTAATTTTGATAAATTAAAA
1 TTAAATTTGATAAATTAAAA
*
14715270 TTAAATTTG-TAATTTAAAA
1 TTAAATTTGATAAATTAAAA
14715289 AAAATTATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (20 bp):
TTAAATTTGATAAATTAAAA
Found at i:14716950 original size:10 final size:10
Alignment explanation
Indices: 14716926--14716969 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
14716916 TATTTTATTT
14716926 TATAAAAAT-
1 TATAAAAATA
*
14716935 TTTAAAAATA
1 TATAAAAATA
14716945 TATAAAAACTA
1 TATAAAAA-TA
14716956 -ATAAAAATA
1 TATAAAAATA
14716965 TATAA
1 TATAA
14716970 TTGGTTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
9 10 0.33
10 18 0.60
11 2 0.07
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (10 bp):
TATAAAAATA
Found at i:14717304 original size:15 final size:17
Alignment explanation
Indices: 14717284--14717315 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14717274 ATTATTCCTA
14717284 TATTTT-TA-ATATTTT
1 TATTTTATATATATTTT
14717299 TATTTTATATATATTTT
1 TATTTTATATATATTTT
14717316 AGATATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 2 0.13
17 7 0.47
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (17 bp):
TATTTTATATATATTTT
Found at i:14717439 original size:2 final size:2
Alignment explanation
Indices: 14717432--14717459 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
14717422 CCACAGAGAA
14717432 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14717460 TATTTATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14723532 original size:24 final size:24
Alignment explanation
Indices: 14723505--14723556 Score: 56
Period size: 24 Copynumber: 2.2 Consensus size: 24
14723495 GAAGACTTGT
14723505 TTTAATAT-AATAAAA-ATATAAAAA
1 TTTAATATAAATAAAATA-AT-AAAA
*
14723529 TTT-ATTTAAATAAAATAATAAAA
1 TTTAATATAAATAAAATAATAAAA
14723552 TTTAA
1 TTTAA
14723557 GGATTTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
23 10 0.42
24 13 0.54
25 1 0.04
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (24 bp):
TTTAATATAAATAAAATAATAAAA
Found at i:14724309 original size:19 final size:19
Alignment explanation
Indices: 14724273--14724309 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
14724263 AAATTTTAAA
*
14724273 TTATATCATTTTTATATTT
1 TTATATCATATTTATATTT
*
14724292 TTATATTATATTTATATT
1 TTATATCATATTTATATT
14724310 ATAGTAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (19 bp):
TTATATCATATTTATATTT
Found at i:14729104 original size:33 final size:33
Alignment explanation
Indices: 14729067--14729173 Score: 108
Period size: 33 Copynumber: 3.2 Consensus size: 33
14729057 CTTAGGCAAT
**
14729067 GAAACTTCTGTCATTGCCACAACCATATATGAG
1 GAAACTTCTGTCATTGCCACAACCACGTATGAG
* * *
14729100 GAAACATTGCCTATTATTGCCACAGCCACGTATGAG
1 GAAAC-TT--CTGTCATTGCCACAACCACGTATGAG
* *
14729136 GAAACAT-TGCCTATTGCCACAACCACGTATGAG
1 GAAACTTCTGTC-ATTGCCACAACCACGTATGAG
14729169 GAAAC
1 GAAAC
14729174 ATTACCCATT
Statistics
Matches: 60, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
32 1 0.02
33 30 0.50
34 2 0.03
35 1 0.02
36 26 0.43
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (33 bp):
GAAACTTCTGTCATTGCCACAACCACGTATGAG
Found at i:14729174 original size:33 final size:33
Alignment explanation
Indices: 14729079--14729191 Score: 154
Period size: 33 Copynumber: 3.3 Consensus size: 33
14729069 AACTTCTGTC
**
14729079 ATTGCCACAACCATATATGAGGAAACATTGCCTATT
1 ATTGCCACAACCACGTATGAGGAAACATTGCC---T
*
14729115 ATTGCCACAGCCACGTATGAGGAAACATTGCCT
1 ATTGCCACAACCACGTATGAGGAAACATTGCCT
* *
14729148 ATTGCCACAACCACGTATGAGGAAACATTACCC
1 ATTGCCACAACCACGTATGAGGAAACATTGCCT
14729181 ATTGCCACAAC
1 ATTGCCACAAC
14729192 TGCAAGTGAG
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
33 42 0.59
36 29 0.41
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.22
Consensus pattern (33 bp):
ATTGCCACAACCACGTATGAGGAAACATTGCCT
Found at i:14729500 original size:33 final size:33
Alignment explanation
Indices: 14729461--14729595 Score: 112
Period size: 33 Copynumber: 4.1 Consensus size: 33
14729451 ACTTTAGTTC
* *
14729461 AAGAAACTTCAACCATTCCCACAACCTTGGGTG
1 AAGAAACTCCAACCATTCCCACAACCTTGGGCG
* * *
14729494 AAGAAACTCCTAGCATTCTCACAACCTTGGGCG
1 AAGAAACTCCAACCATTCCCACAACCTTGGGCG
* ***
14729527 AAGAAACTCCTACC-TATCCTGTAACCTT-GGCAG
1 AAGAAACTCCAACCAT-TCCCACAACCTTGGGC-G
* * * * *
14729560 AAGAATCCCCTACCATTCCCATAACTTTGGGCG
1 AAGAAACTCCAACCATTCCCACAACCTTGGGCG
14729593 AAG
1 AAG
14729596 GAATTCCTAA
Statistics
Matches: 83, Mismatches: 15, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
32 4 0.05
33 75 0.90
34 4 0.05
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.22
Consensus pattern (33 bp):
AAGAAACTCCAACCATTCCCACAACCTTGGGCG
Found at i:14729689 original size:33 final size:33
Alignment explanation
Indices: 14729623--14729698 Score: 80
Period size: 33 Copynumber: 2.3 Consensus size: 33
14729613 ACAACTGTGG
* * * * * *
14729623 GTGAAGAGACTCCAGTCATTTCTGCAACGTTCA
1 GTGAAGAAACTCAAGCCATTCCTCCAACCTTCA
14729656 GTGAAGAAACTCAAGCCATTCCTCCAACCTTCA
1 GTGAAGAAACTCAAGCCATTCCTCCAACCTTCA
**
14729689 GCAAAGAAAC
1 GTGAAGAAAC
14729699 CCCTAATGTT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.17, T:0.21
Consensus pattern (33 bp):
GTGAAGAAACTCAAGCCATTCCTCCAACCTTCA
Found at i:14729744 original size:33 final size:33
Alignment explanation
Indices: 14729707--14729799 Score: 109
Period size: 33 Copynumber: 2.8 Consensus size: 33
14729697 ACCCCTAATG
*
14729707 TTCCTGCAAACTTGGGTCAGGAAACTCA-GACCA
1 TTCCTGCAAACTTGGGTGAGGAAACT-ATGACCA
* *
14729740 TTCCTAC-AACAATGGGTGAGGAAACTATGACCA
1 TTCCTGCAAAC-TTGGGTGAGGAAACTATGACCA
* *
14729773 TTCCTGCAATCTTGGGTGAGGATACTA
1 TTCCTGCAAACTTGGGTGAGGAAACTA
14729800 CTGTTCCCAC
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
32 4 0.08
33 44 0.88
34 2 0.04
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (33 bp):
TTCCTGCAAACTTGGGTGAGGAAACTATGACCA
Found at i:14729941 original size:66 final size:65
Alignment explanation
Indices: 14729835--14730041 Score: 243
Period size: 66 Copynumber: 3.1 Consensus size: 65
14729825 AATTTTGGCT
*
14729835 GAGGAAACTCCAACAAATCCTACAACCTTGGGTGAGGAAACTTCAACTATTACCACAACATTGGG
1 GAGGAAACTCCAATAAATCCTACAACCTTGGGTGAGGAAACTTCAACTATT-CCACAACATTGGG
14729900 C
65 C
* * * * * **
14729901 GAGGAAAGTCCAATGAATCCTACAACCTTGGGTGAGGAAACTCCAATCAATCCCATGACATTGGG
1 GAGGAAACTCCAATAAATCCTACAACCTTGGGTGAGGAAACTTCAA-CTATTCCACAACATTGGG
14729966 C
65 C
* * * * * * *
14729967 GAGGAATCTTCAATTATTCCCACAACCTTGGGTGAGGAAACTTCAACTGTTCCTACAACCTTGGG
1 GAGGAAACTCCAATAAATCCTACAACCTTGGGTGAGGAAACTTCAACTATTCC-ACAACATTGGG
*
14730032 T
65 C
14730033 GAGGAAACT
1 GAGGAAACT
14730042 TCGACTGTTC
Statistics
Matches: 116, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
65 4 0.03
66 109 0.94
67 3 0.03
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.22
Consensus pattern (65 bp):
GAGGAAACTCCAATAAATCCTACAACCTTGGGTGAGGAAACTTCAACTATTCCACAACATTGGGC
Found at i:14730005 original size:99 final size:99
Alignment explanation
Indices: 14729829--14730041 Score: 268
Period size: 99 Copynumber: 2.2 Consensus size: 99
14729819 CGAGGAAATT
* * * *
14729829 TTGGCTGAGGAAACTCCAACAAATCCTACAACCTTGGGTGAGGAAACTTCAACTATTACCACAAC
1 TTGGGTGAGGAAACTCCAACAAATCCCACAACATTGGGCGAGGAAACTTCAACTATTACCACAAC
*
14729894 ATTGGGCGAGGAAAGTCCAA-TGAATCCTACAACC
66 ATTGGGCGAGGAAACTCCAACTG-ATCCTACAACC
** * * *
14729928 TTGGGTGAGGAAACTCCAATC-AATCCCATGACATTGGGCGAGGAATCTTCAATTATTCCCACAA
1 TTGGGTGAGGAAACTCCAA-CAAATCCCACAACATTGGGCGAGGAAACTTCAACTATTACCACAA
* * * *
14729992 CCTTGGGTGAGGAAACTTCAACTGTTCCTACAACC
65 CATTGGGCGAGGAAACTCCAACTGATCCTACAACC
14730027 TTGGGTGAGGAAACT
1 TTGGGTGAGGAAACT
14730042 TCGACTGTTC
Statistics
Matches: 98, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
99 95 0.97
100 3 0.03
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (99 bp):
TTGGGTGAGGAAACTCCAACAAATCCCACAACATTGGGCGAGGAAACTTCAACTATTACCACAAC
ATTGGGCGAGGAAACTCCAACTGATCCTACAACC
Found at i:14730051 original size:33 final size:33
Alignment explanation
Indices: 14729829--14730043 Score: 202
Period size: 33 Copynumber: 6.5 Consensus size: 33
14729819 CGAGGAAATT
* * * *
14729829 TTGGCTGAGGAAACTCCAACAAATCCTACAACC
1 TTGGGTGAGGAAACTTCAACTATTCCTACAACC
*
14729862 TTGGGTGAGGAAACTTCAACTATTACC-ACAACA
1 TTGGGTGAGGAAACTTCAACTATT-CCTACAACC
* * * *
14729895 TTGGGCGAGGAAAGTCCAA-TGAATCCTACAACC
1 TTGGGTGAGGAAACTTCAACT-ATTCCTACAACC
* * * ** *
14729928 TTGGGTGAGGAAACTCCAA-TCAATCCCATGACA
1 TTGGGTGAGGAAACTTCAACT-ATTCCTACAACC
* * * *
14729961 TTGGGCGAGGAATCTTCAATTATTCCCACAACC
1 TTGGGTGAGGAAACTTCAACTATTCCTACAACC
*
14729994 TTGGGTGAGGAAACTTCAACTGTTCCTACAACC
1 TTGGGTGAGGAAACTTCAACTATTCCTACAACC
14730027 TTGGGTGAGGAAACTTC
1 TTGGGTGAGGAAACTTC
14730044 GACTGTTCTC
Statistics
Matches: 149, Mismatches: 29, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
32 3 0.02
33 143 0.96
34 3 0.02
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (33 bp):
TTGGGTGAGGAAACTTCAACTATTCCTACAACC
Found at i:14730067 original size:33 final size:32
Alignment explanation
Indices: 14729829--14730083 Score: 153
Period size: 33 Copynumber: 7.8 Consensus size: 32
14729819 CGAGGAAATT
* * ***
14729829 TTGGCTGAGGAAACTCCAACAAATCCTACAACC
1 TTGGGTGAGGAAACTTCAACTGTTCCTACAA-C
*
14729862 TTGGGTGAGGAAACTTCAACTATTACC-ACAAC
1 TTGGGTGAGGAAACTTCAACTGTT-CCTACAAC
* * * *
14729894 ATTGGGCGAGGAAAGTCCAA-TGAATCCTACAACC
1 -TTGGGTGAGGAAACTTCAACTG-TTCCTACAA-C
* ** *
14729928 TTGGGTGAGGAAACTCCAATCAATCCCATGAC-A-
1 TTGGGTGAGGAAACTTCAA-CTGTTCC-T-ACAAC
* * * * *
14729961 TTGGGCGAGGAATCTTCAATTATTCCCACAACC
1 TTGGGTGAGGAAACTTCAACTGTTCCTACAA-C
14729994 TTGGGTGAGGAAACTTCAACTGTTCCTACAACC
1 TTGGGTGAGGAAACTTCAACTGTTCCTACAA-C
*
14730027 TTGGGTGAGGAAACTTCGACTGTT-CTCACAA-
1 TTGGGTGAGGAAACTTCAACTGTTCCT-ACAAC
* *
14730058 TTAATGGTGAGGAAACATCAACTGTT
1 TT--GGGTGAGGAAACTTCAACTGTT
14730084 TGCACGACTA
Statistics
Matches: 176, Mismatches: 31, Indels: 30
0.74 0.13 0.13
Matches are distributed among these distances:
30 2 0.01
31 3 0.02
32 10 0.06
33 152 0.86
34 5 0.03
35 2 0.01
36 2 0.01
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (32 bp):
TTGGGTGAGGAAACTTCAACTGTTCCTACAAC
Found at i:14730538 original size:14 final size:14
Alignment explanation
Indices: 14730519--14730547 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
14730509 GGATGAATAA
14730519 ACTATGAATTGTGC
1 ACTATGAATTGTGC
14730533 ACTATGAATTGTGC
1 ACTATGAATTGTGC
14730547 A
1 A
14730548 TAACGATCGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34
Consensus pattern (14 bp):
ACTATGAATTGTGC
Found at i:14747857 original size:29 final size:29
Alignment explanation
Indices: 14747793--14747857 Score: 69
Period size: 29 Copynumber: 2.3 Consensus size: 29
14747783 CTCTTAAATT
* * *
14747793 ATAAT-AAAATATTTAATTTGATCTTTAA
1 ATAATAAAAATATCTAATATGATATTTAA
** *
14747821 ATTTTAAAAATATCTAATATGATATTTGA
1 ATAATAAAAATATCTAATATGATATTTAA
14747850 ATAATAAA
1 ATAATAAA
14747858 TATGTTAACT
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
28 3 0.11
29 25 0.89
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.43
Consensus pattern (29 bp):
ATAATAAAAATATCTAATATGATATTTAA
Found at i:14753314 original size:3 final size:3
Alignment explanation
Indices: 14753306--14753336 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
14753296 AGTTATATAT
14753306 TTA TTA TTA TTA TTA -TA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
14753337 TTTTGTAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:14753315 original size:14 final size:14
Alignment explanation
Indices: 14753298--14753335 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
14753288 ATGTATATAG
14753298 TTATATATT-TATTA
1 TTAT-TATTATATTA
14753312 TTATTATTATATTA
1 TTATTATTATATTA
14753326 TTATTATTAT
1 TTATTATTAT
14753336 TTTTTGTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 4 0.17
14 19 0.83
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (14 bp):
TTATTATTATATTA
Found at i:14754209 original size:115 final size:115
Alignment explanation
Indices: 14754007--14754241 Score: 452
Period size: 115 Copynumber: 2.0 Consensus size: 115
14753997 GTGTTCTTCA
14754007 GCCTTTTTAGAGAGAAGGGAGAGGAAAAATGAAGAAGAGAGAGAAAAGAGAGGAACGTTCTGCCG
1 GCCTTTTTAGAGAGAAGGGAGAGGAAAAATGAAGAAGAGAGAGAAAAGAGAGGAACGTTCTGCCG
*
14754072 AAAAACAGAGGGAAGTGCCTTTTATACCCTCTCAAAATGACGTCGTTTTG
66 AAAAACAGAGGGAAGTGCCTTTTATACCCTCTCAAAACGACGTCGTTTTG
*
14754122 GCCTTTTTAGAGAGAAGGGAGAGGAAAAATGAAGAAGAGAGAGAAAAGAGAGGAGCGTTCTGCCG
1 GCCTTTTTAGAGAGAAGGGAGAGGAAAAATGAAGAAGAGAGAGAAAAGAGAGGAACGTTCTGCCG
14754187 AAAAACAGAGGGAAGTGCCTTTTATACCCTCTCAAAACGACGTCGTTTTG
66 AAAAACAGAGGGAAGTGCCTTTTATACCCTCTCAAAACGACGTCGTTTTG
14754237 GCCTT
1 GCCTT
14754242 AAGTAACCCA
Statistics
Matches: 118, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
115 118 1.00
ACGTcount: A:0.36, C:0.15, G:0.29, T:0.20
Consensus pattern (115 bp):
GCCTTTTTAGAGAGAAGGGAGAGGAAAAATGAAGAAGAGAGAGAAAAGAGAGGAACGTTCTGCCG
AAAAACAGAGGGAAGTGCCTTTTATACCCTCTCAAAACGACGTCGTTTTG
Found at i:14754520 original size:15 final size:16
Alignment explanation
Indices: 14754479--14754532 Score: 60
Period size: 16 Copynumber: 3.5 Consensus size: 16
14754469 TTAGATTAGG
*
14754479 TTTATTTAATATTCTT
1 TTTATTTATTATTCTT
*
14754495 TTTATCT-TTATT-TT
1 TTTATTTATTATTCTT
14754509 TTTATTTATTATTCTAT
1 TTTATTTATTATTCT-T
14754526 TTT-TTTA
1 TTTATTTA
14754533 AATAAAAATC
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
14 8 0.25
15 9 0.28
16 11 0.34
17 4 0.12
ACGTcount: A:0.20, C:0.06, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTATTTATTATTCTT
Found at i:14754632 original size:58 final size:58
Alignment explanation
Indices: 14754548--14755057 Score: 689
Period size: 58 Copynumber: 8.8 Consensus size: 58
14754538 AAATCAAAAC
*
14754548 TTTCAAAAAAAAATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAT
1 TTTCAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAT
* **** *
14754606 TTTTAAAAGGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAT
1 TTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAT
* *
14754664 TTTCAAAAAAAGATTTTT---G-AAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGT
1 TTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT-AAA-T
*
14754720 TTT-GAAAAAATATTTTTGA-GAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAT
1 TTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAT
* * * * *
14754776 TTTCAAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATTAATTTTTCTTGGAAATCAAAG
1 TTTCAAAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT-AAAT
*
14754836 TTTCAAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAT
1 TTTC---AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAT
* *
14754897 TTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAGT
1 TTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAT
*
14754955 TTTC-AAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAGATAAAT
1 TTTCAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAT
14755012 TTTCAAAAAAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCC
1 TTTCAAAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCC
14755058 CTACACAAGA
Statistics
Matches: 404, Mismatches: 31, Indels: 34
0.86 0.07 0.07
Matches are distributed among these distances:
54 29 0.07
55 16 0.04
56 9 0.02
57 64 0.16
58 196 0.49
59 31 0.08
60 7 0.02
61 7 0.02
62 38 0.09
63 7 0.02
ACGTcount: A:0.44, C:0.07, G:0.14, T:0.36
Consensus pattern (58 bp):
TTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAT
Found at i:14755862 original size:18 final size:17
Alignment explanation
Indices: 14755823--14755865 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
14755813 TTTTAAGTCG
*
14755823 TGTTATTTTATATCATA
1 TGTTATATTATATCATA
*
14755840 T-TTATATTATATTATCA
1 TGTTATATTATATCAT-A
14755857 TGTTATATT
1 TGTTATATT
14755866 TTAAATCATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 12 0.55
17 3 0.14
18 7 0.32
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.60
Consensus pattern (17 bp):
TGTTATATTATATCATA
Found at i:14757584 original size:23 final size:23
Alignment explanation
Indices: 14757541--14757586 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
14757531 GGCTATTTAA
*
14757541 GATATATAGATGAGTTCATTTTT
1 GATATATAGATGAGTTAATTTTT
*
14757564 GATATATTGAT-AGCTTAATTTTT
1 GATATATAGATGAG-TTAATTTTT
14757587 TAATTTTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 2 0.10
23 18 0.90
ACGTcount: A:0.30, C:0.04, G:0.15, T:0.50
Consensus pattern (23 bp):
GATATATAGATGAGTTAATTTTT
Found at i:14759461 original size:42 final size:42
Alignment explanation
Indices: 14759381--14759462 Score: 96
Period size: 42 Copynumber: 1.9 Consensus size: 42
14759371 ATAATATGAC
**
14759381 AAAATTAATTTTCTACTTTTTTATTTTATTTTTTGGACATAAA
1 AAAATTAATTTTCTACTTTTTTATTTTA-TTTAAGGACATAAA
*
14759424 AAAATTAA-TTTCTTCTTTTAATTATTTTA-TTAAGGACAT
1 AAAATTAATTTTCTACTTTT--TTATTTTATTTAAGGACAT
14759463 GTTGTATTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
42 18 0.53
43 8 0.24
44 8 0.24
ACGTcount: A:0.34, C:0.07, G:0.05, T:0.54
Consensus pattern (42 bp):
AAAATTAATTTTCTACTTTTTTATTTTATTTAAGGACATAAA
Found at i:14759798 original size:22 final size:21
Alignment explanation
Indices: 14759764--14759821 Score: 71
Period size: 23 Copynumber: 2.6 Consensus size: 21
14759754 TTTTTATTTT
14759764 TATTTTTATTTATTTAATAATAA
1 TATTTTTA-TTATTTAATAAT-A
* *
14759787 TATTATTATTATTTTATTAATA
1 TATTTTTATTA-TTTAATAATA
14759809 TATTTTTATTATT
1 TATTTTTATTATT
14759822 ATTTATCTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
21 2 0.06
22 14 0.45
23 15 0.48
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (21 bp):
TATTTTTATTATTTAATAATA
Found at i:14759815 original size:14 final size:14
Alignment explanation
Indices: 14759798--14759846 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
14759788 ATTATTATTA
14759798 TTTTATTAATATAT
1 TTTTATTAATATAT
14759812 TTTTATT-AT-TAT
1 TTTTATTAATATAT
*
14759824 TTATCTGTTAATAT-T
1 TT-T-TATTAATATAT
14759839 TTTTATTA
1 TTTTATTA
14759847 TTTATCTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
12 5 0.17
13 7 0.24
14 11 0.38
15 5 0.17
16 1 0.03
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (14 bp):
TTTTATTAATATAT
Found at i:14759844 original size:24 final size:24
Alignment explanation
Indices: 14759766--14759919 Score: 96
Period size: 24 Copynumber: 6.7 Consensus size: 24
14759756 TTTATTTTTA
* *
14759766 TTTTTATTTATTTA-ATAATAATA-
1 TTTTTA-TTATTTATCTATTAATAT
* *
14759789 TTATTATTATTTTAT-TAAT-ATATT
1 TTTTTATTA-TTTATCTATTAATA-T
*
14759813 TTTATTATTATTTATCTGTTAATAT
1 TTT-TTATTATTTATCTATTAATAT
14759838 TTTTTATTATTTATCTATTAATA-
1 TTTTTATTATTTATCTATTAATAT
* *
14759861 TATAT-TTATTTATCTATTAATA-
1 TTTTTATTATTTATCTATTAATAT
* *
14759883 --TATATT-TTTATCTATT-ATTT
1 TTTTTATTATTTATCTATTAATAT
*
14759903 TTTTTTTTACTTTATCT
1 TTTTTATTA-TTTATCT
14759920 TTTTCTTGAT
Statistics
Matches: 108, Mismatches: 10, Indels: 25
0.76 0.07 0.17
Matches are distributed among these distances:
19 2 0.02
20 13 0.12
21 2 0.02
22 27 0.25
23 16 0.15
24 33 0.31
25 12 0.11
26 3 0.03
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.66
Consensus pattern (24 bp):
TTTTTATTATTTATCTATTAATAT
Found at i:14759872 original size:22 final size:22
Alignment explanation
Indices: 14759820--14759899 Score: 101
Period size: 22 Copynumber: 3.6 Consensus size: 22
14759810 ATTTTTATTA
* * *
14759820 TTATTTATCTGTTAATATTTTTT
1 TTATTTATCTATTAATA-TATAT
14759843 ATTATTTATCTATTAATATATAT
1 -TTATTTATCTATTAATATATAT
14759866 TTATTTATCTATTAATATATA-
1 TTATTTATCTATTAATATATAT
14759887 TT-TTTATCTATTA
1 TTATTTATCTATTA
14759900 TTTTTTTTTT
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
20 11 0.21
21 2 0.04
22 21 0.40
23 3 0.06
24 16 0.30
ACGTcount: A:0.31, C:0.05, G:0.01, T:0.62
Consensus pattern (22 bp):
TTATTTATCTATTAATATATAT
Found at i:14759917 original size:17 final size:20
Alignment explanation
Indices: 14759887--14759923 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
14759877 TTAATATATA
14759887 TTTTTATCTATTAT-TTTTT
1 TTTTTATCTATTATCTTTTT
14759906 TTTTTA-CT-TTATCTTTTT
1 TTTTTATCTATTATCTTTTT
14759924 CTTGATCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 4 0.24
18 7 0.41
19 6 0.35
ACGTcount: A:0.14, C:0.08, G:0.00, T:0.78
Consensus pattern (20 bp):
TTTTTATCTATTATCTTTTT
Found at i:14760663 original size:3 final size:3
Alignment explanation
Indices: 14760655--14760725 Score: 53
Period size: 3 Copynumber: 24.7 Consensus size: 3
14760645 ATTTATTTAT
* * *
14760655 TTA TTA TTA TTA TTA TTA TCA TTA TTCC TTAA TTT TTA TT- TT- TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TT-A TT-A TTA TTA TTA TTA TTA
*
14760700 TT- TTG TT- TTA TT- TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
14760726 TTAATGATTT
Statistics
Matches: 56, Mismatches: 7, Indels: 10
0.77 0.10 0.14
Matches are distributed among these distances:
2 10 0.18
3 42 0.75
4 4 0.07
ACGTcount: A:0.24, C:0.04, G:0.01, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:14760799 original size:60 final size:61
Alignment explanation
Indices: 14760732--14761063 Score: 353
Period size: 60 Copynumber: 5.4 Consensus size: 61
14760722 TATTTTAATG
14760732 ATTTTTC-T-AAAATAAAAATTTCAAAAAAAATATATTTTTAGGAAAAAGTTGAAAGTATCA
1 ATTTTTCTTAAAAATAAAAATTTCAAAAAAAA-ATATTTTTAGGAAAAAGTTGAAAGTATCA
* *
14760792 ATTTTTCTTAAAAATAAAATTTTCAAAAATAAAAAAATATTTTT-GAGAAAAAGTTGAAAGTGTC
1 ATTTTTCTTAAAAATAAAAATTTC---AA-AAAAAAATATTTTTAG-GAAAAAGTTGAAAGTATC
*
14760856 T
61 A
* * *
14760857 ATTTTTCTTAAAAATAAAATTTTCAAAAAAAAAT-TTTTT-GGAAAAAAATTGAAAATATCA
1 ATTTTTCTTAAAAATAAAAATTTCAAAAAAAAATATTTTTAGG-AAAAAGTTGAAAGTATCA
* * * * * * *
14760917 AATTTTC-TCAAAATTAAAATTT-TAAGAAAAATATTTTTAGGGGAAAAGTTGAAAGTACCA
1 ATTTTTCTTAAAAATAAAAATTTCAAAAAAAAATATTTTTA-GGAAAAAGTTGAAAGTATCA
*
14760977 ATTTTTCTTAAAAATAAAAA-TT-ATAAAAAAATATTTTTGAAGG-AAAAGTTGAAAGTATCA
1 ATTTTTCTTAAAAATAAAAATTTCAAAAAAAAATATTTTT--AGGAAAAAGTTGAAAGTATCA
*
14761037 A-TTTTCTTTAAAATAAAAACTTTCAAA
1 ATTTTTCTTAAAAATAAAAA-TTTCAAA
14761064 TGCTTTGAGG
Statistics
Matches: 229, Mismatches: 26, Indels: 32
0.80 0.09 0.11
Matches are distributed among these distances:
58 8 0.03
59 35 0.15
60 85 0.37
61 25 0.11
62 18 0.08
64 1 0.00
65 51 0.22
66 6 0.03
ACGTcount: A:0.50, C:0.05, G:0.08, T:0.36
Consensus pattern (61 bp):
ATTTTTCTTAAAAATAAAAATTTCAAAAAAAAATATTTTTAGGAAAAAGTTGAAAGTATCA
Found at i:14762160 original size:29 final size:29
Alignment explanation
Indices: 14762104--14762160 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
14762094 TAAATACAAA
* **
14762104 TAATATGGATATACACAAATAGTTATGAT
1 TAATATAGATATACACAAATAGACATGAT
* *
14762133 TAATATAGATATATACGAATAGACATGA
1 TAATATAGATATACACAAATAGACATGA
14762161 CTAACACGAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.47, C:0.07, G:0.14, T:0.32
Consensus pattern (29 bp):
TAATATAGATATACACAAATAGACATGAT
Found at i:14763388 original size:28 final size:30
Alignment explanation
Indices: 14763356--14763427 Score: 80
Period size: 28 Copynumber: 2.5 Consensus size: 30
14763346 TAAAAATATA
*
14763356 AAATATATTTTTTATTTATA-TTA-AATTT
1 AAATATATTTTTTATTTAAATTTATAATTT
*
14763384 AAATATAATATTTTA-TTAAATTTATAATTT
1 AAATAT-ATTTTTTATTTAAATTTATAATTT
*
14763414 ATATAT-TTTTTTAT
1 AAATATATTTTTTAT
14763428 ATTTTTTTCA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
28 16 0.44
29 10 0.28
30 10 0.28
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (30 bp):
AAATATATTTTTTATTTAAATTTATAATTT
Found at i:14763400 original size:23 final size:25
Alignment explanation
Indices: 14763368--14763431 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
14763358 ATATATTTTT
14763368 TATTTATATTAAATTTA-AATATA-A
1 TATTT-TATTAAATTTATAATATATA
*
14763392 TATTTTATTAAATTTATAATTTATA
1 TATTTTATTAAATTTATAATATATA
* *
14763417 TATTTTTTTATATTT
1 TATTTTATTAAATTT
14763432 TTTTCATATA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
23 11 0.31
24 10 0.29
25 14 0.40
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (25 bp):
TATTTTATTAAATTTATAATATATA
Found at i:14763428 original size:12 final size:12
Alignment explanation
Indices: 14763411--14763443 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
14763401 AAATTTATAA
14763411 TTTATATATTTT
1 TTTATATATTTT
14763423 TTTATAT-TTTT
1 TTTATATATTTT
*
14763434 TTCATATATT
1 TTTATATATT
14763444 ATTATCGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (12 bp):
TTTATATATTTT
Found at i:14763802 original size:10 final size:10
Alignment explanation
Indices: 14763787--14763820 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
14763777 AAATGAAATG
14763787 AAAGTTTTGA
1 AAAGTTTTGA
14763797 AAAGTTTTGA
1 AAAGTTTTGA
14763807 AAA-TTGTTGA
1 AAAGTT-TTGA
14763817 AAAG
1 AAAG
14763821 CAAAAATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 2 0.09
10 20 0.91
ACGTcount: A:0.44, C:0.00, G:0.21, T:0.35
Consensus pattern (10 bp):
AAAGTTTTGA
Found at i:14764834 original size:14 final size:16
Alignment explanation
Indices: 14764805--14764868 Score: 62
Period size: 16 Copynumber: 4.0 Consensus size: 16
14764795 AAAAAATACT
*
14764805 TTTTATTATTTATTTAA
1 TTTTA-TATATATTTAA
14764822 TTTTATA-AT-TTT-A
1 TTTTATATATATTTAA
*
14764835 TATTATATATATTTAA
1 TTTTATATATATTTAA
14764851 TTTTATATTTATATTTAA
1 TTTTATA--TATATTTAA
14764869 AAAATAATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
13 7 0.18
14 5 0.13
15 4 0.10
16 9 0.23
17 5 0.13
18 9 0.23
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
TTTTATATATATTTAA
Found at i:14764861 original size:27 final size:27
Alignment explanation
Indices: 14764804--14764865 Score: 85
Period size: 27 Copynumber: 2.3 Consensus size: 27
14764794 TAAAAAATAC
14764804 TTTT-TATTATTTATTTAATTTTATAA
1 TTTTATATTATTTATTTAATTTTATAA
14764830 TTTTATATTATATATATTTAATTTTAT-A
1 TTTTATATTAT-T-TATTTAATTTTATAA
14764858 -TTTATATT
1 TTTTATATT
14764866 TAAAAAATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
26 4 0.12
27 14 0.42
28 2 0.06
29 13 0.39
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (27 bp):
TTTTATATTATTTATTTAATTTTATAA
Found at i:14764878 original size:20 final size:19
Alignment explanation
Indices: 14764855--14764925 Score: 61
Period size: 20 Copynumber: 3.5 Consensus size: 19
14764845 ATTTAATTTT
14764855 ATATTTATATTTAAAAAATA
1 ATATTT-TATTTAAAAAATA
* * *
14764875 ATATTTTACATTCAAATATA
1 ATATTTTA-TTTAAAAAATA
* *
14764895 TTTTTTTATATTTAAAAAATA
1 -ATATTT-TATTTAAAAAATA
14764916 ATATTTTATT
1 ATATTTTATT
14764926 AATTTTAAAT
Statistics
Matches: 38, Mismatches: 10, Indels: 7
0.69 0.18 0.13
Matches are distributed among these distances:
19 6 0.16
20 18 0.47
21 12 0.32
22 2 0.05
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (19 bp):
ATATTTTATTTAAAAAATA
Found at i:14764924 original size:21 final size:21
Alignment explanation
Indices: 14764858--14764924 Score: 82
Period size: 21 Copynumber: 3.2 Consensus size: 21
14764848 TAATTTTATA
14764858 TTTATATTTAAAAAATAATAT
1 TTTATATTTAAAAAATAATAT
* * * * *
14764879 TTTACA-TTCAAATATATTTT
1 TTTATATTTAAAAAATAATAT
14764899 TTTATATTTAAAAAATAATAT
1 TTTATATTTAAAAAATAATAT
14764920 TTTAT
1 TTTAT
14764925 TAATTTTAAA
Statistics
Matches: 35, Mismatches: 10, Indels: 2
0.74 0.21 0.04
Matches are distributed among these distances:
20 15 0.43
21 20 0.57
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (21 bp):
TTTATATTTAAAAAATAATAT
Found at i:14764932 original size:24 final size:23
Alignment explanation
Indices: 14764888--14764934 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
14764878 TTTTACATTC
*
14764888 AAATATATTTTTTTATATTTAAA
1 AAATATATTTTTTAATATTTAAA
14764911 AAATAATATTTTATTAAT-TTTAAA
1 AAAT-ATATTTT-TTAATATTTAAA
14764935 TCAAATTAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
AAATATATTTTTTAATATTTAAA
Found at i:14765337 original size:3 final size:3
Alignment explanation
Indices: 14765331--14765357 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
14765321 ACTTTTTTTT
14765331 TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC
14765358 GTTTTCAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:14773088 original size:12 final size:12
Alignment explanation
Indices: 14773073--14773131 Score: 66
Period size: 12 Copynumber: 4.7 Consensus size: 12
14773063 AAATTATTTT
14773073 TTTAATTTTATA
1 TTTAATTTTATA
14773085 TTTAATTTTATA
1 TTTAATTTTATA
*
14773097 TATT-TTTATATATA
1 T-TTAATT-T-TATA
14773111 TTTAATTTTATA
1 TTTAATTTTATA
14773123 TTTATATTT
1 TTTA-ATTT
14773132 AAAATAATAT
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
12 23 0.57
13 10 0.25
14 7 0.17
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTAATTTTATA
Found at i:14774502 original size:21 final size:20
Alignment explanation
Indices: 14774460--14774499 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
14774450 CTATTAATAA
* *
14774460 AATATTAAAATTTTAATTTT
1 AATAATAAAAATTTAATTTT
14774480 AATAATAAAAATTTAATTTT
1 AATAATAAAAATTTAATTTT
14774500 TAACAATCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
AATAATAAAAATTTAATTTT
Found at i:14786156 original size:31 final size:31
Alignment explanation
Indices: 14786121--14786180 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
14786111 GGTCGGATCG
*
14786121 GATTCATAATCTTAGTCGACCCTACTCGATT
1 GATTCATAATCTTAGTCGACCCGACTCGATT
* *
14786152 GATTCATAATCTTATTCGATCCGACTCGA
1 GATTCATAATCTTAGTCGACCCGACTCGA
14786181 CTCGAAACCC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.27, C:0.25, G:0.13, T:0.35
Consensus pattern (31 bp):
GATTCATAATCTTAGTCGACCCGACTCGATT
Found at i:14786482 original size:20 final size:20
Alignment explanation
Indices: 14786457--14786495 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14786447 ATCAATGGTG
14786457 TCATATATATAAATAAAATA
1 TCATATATATAAATAAAATA
* *
14786477 TCATATTTATTAATAAAAT
1 TCATATATATAAATAAAAT
14786496 TTTAAAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (20 bp):
TCATATATATAAATAAAATA
Found at i:14787445 original size:42 final size:42
Alignment explanation
Indices: 14787371--14787456 Score: 118
Period size: 42 Copynumber: 2.0 Consensus size: 42
14787361 CGTCTAGGCC
* * * *
14787371 TCAACGGCCGCCGCTTAGTTGTTGGGAACATTTGGAGACGAG
1 TCAAAGGCCGCCGCCTAGTTGTTCGGAACATTTCGAGACGAG
* *
14787413 TCAAAGGCGGCCGCCTAGTTGTTCGGATCATTTCGAGACGAG
1 TCAAAGGCCGCCGCCTAGTTGTTCGGAACATTTCGAGACGAG
14787455 TC
1 TC
14787457 TTGCTTTCGA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.21, C:0.23, G:0.31, T:0.24
Consensus pattern (42 bp):
TCAAAGGCCGCCGCCTAGTTGTTCGGAACATTTCGAGACGAG
Found at i:14787692 original size:24 final size:24
Alignment explanation
Indices: 14787665--14787714 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
14787655 TTTCCGAGCA
14787665 TCACGTCTTTAACTTCATTGATTT
1 TCACGTCTTTAACTTCATTGATTT
14787689 TCACGTCTTTAACTTCATTGATTT
1 TCACGTCTTTAACTTCATTGATTT
14787713 TC
1 TC
14787715 GAAACAAGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.20, C:0.22, G:0.08, T:0.50
Consensus pattern (24 bp):
TCACGTCTTTAACTTCATTGATTT
Found at i:14788681 original size:299 final size:299
Alignment explanation
Indices: 14788143--14788734 Score: 970
Period size: 299 Copynumber: 2.0 Consensus size: 299
14788133 TTTTAAAAAT
* * **
14788143 TCAATTAAATTTATGAGTTAATTGAGTCAAATATTAACATATTCAAATTTGGCTCACTCAATAAA
1 TCAATTAAATTTATGAGCTAATTGAATCAAATATTAACATATTCAAATTTAACTCACTCAATAAA
** * *
14788208 TCAAGTTATTCAAACTCAAAATTGATTCAATAATAATTGAATTAAATTTAAATTTTATCTTAATT
66 TCAAGTTATTCAAACTCAAAATCAATTCAATAATAATTGAATAAAATTTAAATTTTATCTGAATT
* *
14788273 AAACTCAAATAGCTTGCTAATATTGATTTATTATTTTTATTTCCATTTGTACTTGATATAAATGC
131 AAACTCAAATAGCTTGCTAATATTGATTTATTATTTTCATTTCCATTCGTACTTGATATAAATGC
*
14788338 ATATAAAGCATTATGGTTTACAAAATAAACAAGCTTATGCACAATTTTGAACTATCTGCATATGT
196 ATATAAAGCATTATGGTTTACAAAATAAACAAGCTTATGCACAATTTTGAACCATCTGCATATGT
* * *
14788403 CAGA-TCATCGAACTGCGAAGTCATTAAAAAAAATGATAA
261 CAAACT-ATCGAACCGCGAAATCATTAAAAAAAATGATAA
* *
14788442 TCAATTAAATTTATGAGCTAATTGAATCAAATATTAACATGTTCAAATTTAATTCACTCAATAAA
1 TCAATTAAATTTATGAGCTAATTGAATCAAATATTAACATATTCAAATTTAACTCACTCAATAAA
* * *
14788507 TCAAGTTATTTAAGCTCAAAATCAATTCAATAATAATTGAATAAAATTTGAATTTTATCTGAATT
66 TCAAGTTATTCAAACTCAAAATCAATTCAATAATAATTGAATAAAATTTAAATTTTATCTGAATT
* *
14788572 AAACTCAAATAGTTTGCTAATATTGATTTATTATTTTCATTTCTATTCGTACTTGATATAAATGC
131 AAACTCAAATAGCTTGCTAATATTGATTTATTATTTTCATTTCCATTCGTACTTGATATAAATGC
*
14788637 ATATAAAGCATTATGGTTTACAAAATAAATAAGCTTATGCACAATTTTGAACCATCTGCATATGT
196 ATATAAAGCATTATGGTTTACAAAATAAACAAGCTTATGCACAATTTTGAACCATCTGCATATGT
14788702 CAAACTATCGAACCGCGAAATCATTAAAAAAAA
261 CAAACTATCGAACCGCGAAATCATTAAAAAAAA
14788735 AAGAAATGAG
Statistics
Matches: 270, Mismatches: 22, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
299 269 1.00
300 1 0.00
ACGTcount: A:0.41, C:0.13, G:0.09, T:0.37
Consensus pattern (299 bp):
TCAATTAAATTTATGAGCTAATTGAATCAAATATTAACATATTCAAATTTAACTCACTCAATAAA
TCAAGTTATTCAAACTCAAAATCAATTCAATAATAATTGAATAAAATTTAAATTTTATCTGAATT
AAACTCAAATAGCTTGCTAATATTGATTTATTATTTTCATTTCCATTCGTACTTGATATAAATGC
ATATAAAGCATTATGGTTTACAAAATAAACAAGCTTATGCACAATTTTGAACCATCTGCATATGT
CAAACTATCGAACCGCGAAATCATTAAAAAAAATGATAA
Found at i:14790008 original size:18 final size:17
Alignment explanation
Indices: 14789975--14790008 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14789965 CATAGCCGCT
*
14789975 TCTTGCTTATTTTGCTG
1 TCTTGCTTAATTTGCTG
14789992 TCTTGCTTCAATTTGCT
1 TCTTGCTT-AATTTGCT
14790009 CCTTAGACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.09, C:0.21, G:0.15, T:0.56
Consensus pattern (17 bp):
TCTTGCTTAATTTGCTG
Found at i:14791788 original size:20 final size:21
Alignment explanation
Indices: 14791752--14791803 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
14791742 CCCGAAATTA
14791752 ATAAAATATTATTTTTTAAAAT
1 ATAAAATATTA-TTTTTAAAAT
*
14791774 ATAAAATATTATTTTTTAAAT
1 ATAAAATATTATTTTTAAAAT
14791795 AT-AAATATT
1 ATAAAATATT
14791804 TAAAAATATC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 7 0.24
21 11 0.38
22 11 0.38
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATAAAATATTATTTTTAAAAT
Found at i:14791794 original size:21 final size:22
Alignment explanation
Indices: 14791752--14791803 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
14791742 CCCGAAATTA
14791752 ATAAAATATTATTTTTTAAAAT
1 ATAAAATATTATTTTTTAAAAT
14791774 ATAAAATATTATTTTTT-AAAT
1 ATAAAATATTATTTTTTAAAAT
14791795 AT-AAATATT
1 ATAAAATATT
14791804 TAAAAATATC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 7 0.23
21 6 0.20
22 17 0.57
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
ATAAAATATTATTTTTTAAAAT
Found at i:14793696 original size:52 final size:52
Alignment explanation
Indices: 14793630--14793734 Score: 210
Period size: 52 Copynumber: 2.0 Consensus size: 52
14793620 TTAATTTCGA
14793630 TCAATAAATGAAAATGATTTTAAAAGAATTTCAATTTTTGATTAATTCGATT
1 TCAATAAATGAAAATGATTTTAAAAGAATTTCAATTTTTGATTAATTCGATT
14793682 TCAATAAATGAAAATGATTTTAAAAGAATTTCAATTTTTGATTAATTCGATT
1 TCAATAAATGAAAATGATTTTAAAAGAATTTCAATTTTTGATTAATTCGATT
14793734 T
1 T
14793735 TAAAATCGAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.42, C:0.06, G:0.10, T:0.43
Consensus pattern (52 bp):
TCAATAAATGAAAATGATTTTAAAAGAATTTCAATTTTTGATTAATTCGATT
Found at i:14796276 original size:20 final size:20
Alignment explanation
Indices: 14796225--14796276 Score: 50
Period size: 20 Copynumber: 2.5 Consensus size: 20
14796215 TTTTATCAAA
*
14796225 ATTTAAATTGTATTATTTTTAG
1 ATTT-AATT-TATCATTTTTAG
** *
14796247 ATTTTTTTTATCATTTTTAT
1 ATTTAATTTATCATTTTTAG
14796267 ATTTAATTTA
1 ATTTAATTTA
14796277 AAATTATTAA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
20 18 0.75
21 2 0.08
22 4 0.17
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (20 bp):
ATTTAATTTATCATTTTTAG
Found at i:14797252 original size:21 final size:20
Alignment explanation
Indices: 14797228--14797270 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
14797218 AATATTTTAT
14797228 AATTAAAATTATTGAAAATTA
1 AATTAAAATTATT-AAAATTA
**
14797249 AATTTTAATTATTAAAATTA
1 AATTAAAATTATTAAAATTA
14797269 AA
1 AA
14797271 AATCCAACTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (20 bp):
AATTAAAATTATTAAAATTA
Found at i:14798251 original size:16 final size:14
Alignment explanation
Indices: 14798223--14798257 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 14
14798213 CATAATTAAA
14798223 AATAATTATAAATT
1 AATAATTATAAATT
14798237 AATAATATATAAAATT
1 AATAAT-TAT-AAATT
14798253 AATAA
1 AATAA
14798258 AAAAATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.32
15 3 0.16
16 10 0.53
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
AATAATTATAAATT
Found at i:14798280 original size:17 final size:18
Alignment explanation
Indices: 14798234--14798281 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
14798224 ATAATTATAA
*
14798234 ATTAATAATATATAAAATT
1 ATTAATAA-AAATAAAATT
*
14798253 AATAA-AAAAATAAAATT
1 ATTAATAAAAATAAAATT
14798270 -TTAATAAAAATA
1 ATTAATAAAAATA
14798282 TTAATTATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
16 3 0.12
17 16 0.64
18 2 0.08
19 4 0.16
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
ATTAATAAAAATAAAATT
Found at i:14799916 original size:18 final size:19
Alignment explanation
Indices: 14799893--14799931 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
14799883 AAAATCTAAA
*
14799893 TATTTCATTATTCAA-TAT
1 TATTTCATAATTCAAGTAT
14799911 TATTTCATAATTCAAGTAT
1 TATTTCATAATTCAAGTAT
14799930 TA
1 TA
14799932 CACACACTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.36, C:0.10, G:0.03, T:0.51
Consensus pattern (19 bp):
TATTTCATAATTCAAGTAT
Found at i:14802291 original size:2 final size:2
Alignment explanation
Indices: 14802284--14802309 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14802274 ACATATAAAC
14802284 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
14802310 CAAATTTAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14803859 original size:22 final size:21
Alignment explanation
Indices: 14803808--14803859 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
14803798 AATTATTTTT
* *
14803808 TATATAAA-TTTATTTAGATA
1 TATATAAATTTTATTAAAATA
*
14803828 TATTTAAAATTTTATTAAAATAA
1 TATAT-AAATTTTATTAAAAT-A
14803851 TATATAAAT
1 TATATAAAT
14803860 ATAAAATTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 4 0.16
21 3 0.12
22 13 0.52
23 5 0.20
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
TATATAAATTTTATTAAAATA
Found at i:14816058 original size:17 final size:17
Alignment explanation
Indices: 14816032--14816067 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
14816022 AATAACCATA
14816032 ATAAAGATAAAATTATT
1 ATAAAGATAAAATTATT
*
14816049 ATAAATATAAAATTATT
1 ATAAAGATAAAATTATT
14816066 AT
1 AT
14816068 TTTATTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (17 bp):
ATAAAGATAAAATTATT
Found at i:14816562 original size:29 final size:30
Alignment explanation
Indices: 14816529--14816587 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
14816519 TTGCTAAAAC
14816529 AAAA-TGGTATTTTTTA-TATTTAATTTTTT
1 AAAATTGGTA-TTTTTAGTATTTAATTTTTT
14816558 AAAATTGGTATTTTTAGTATTTAATTTTTT
1 AAAATTGGTATTTTTAGTATTTAATTTTTT
14816588 TAATATTTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 10 0.36
30 18 0.64
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (30 bp):
AAAATTGGTATTTTTAGTATTTAATTTTTT
Found at i:14821251 original size:26 final size:25
Alignment explanation
Indices: 14821196--14821253 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
14821186 TTTATTAAAT
*
14821196 ATTTTTTTCATTCATAGTTAAGATA
1 ATTTTTTTCAATCATAGTTAAGATA
* *
14821221 ATTTTTTTCAATCCTGGTTACAG-TA
1 ATTTTTTTCAATCATAGTTA-AGATA
14821246 ATTTTTTT
1 ATTTTTTT
14821254 AATTGTGATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 27 0.93
26 2 0.07
ACGTcount: A:0.26, C:0.10, G:0.09, T:0.55
Consensus pattern (25 bp):
ATTTTTTTCAATCATAGTTAAGATA
Found at i:14821313 original size:33 final size:34
Alignment explanation
Indices: 14821249--14821314 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 34
14821239 TACAGTAATT
* * * *
14821249 TTTTTAATTGTGATTATAATCATTTTTATTATTA
1 TTTTTAATTGTCATTACAATCAATTTCATTATTA
14821283 TTTTTAATT-TCATTACAATCAATTTCATTATT
1 TTTTTAATTGTCATTACAATCAATTTCATTATT
14821315 TATGCAAATG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 19 0.68
34 9 0.32
ACGTcount: A:0.30, C:0.08, G:0.03, T:0.59
Consensus pattern (34 bp):
TTTTTAATTGTCATTACAATCAATTTCATTATTA
Found at i:14821944 original size:13 final size:13
Alignment explanation
Indices: 14821928--14821968 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
14821918 CAATTTGAAT
14821928 ATATTATTTATTA
1 ATATTATTTATTA
* *
14821941 ATATT-TTAAAT-
1 ATATTATTTATTA
14821952 ATATTATTTATTA
1 ATATTATTTATTA
14821965 ATAT
1 ATAT
14821969 AATAAAATCT
Statistics
Matches: 22, Mismatches: 4, Indels: 4
0.73 0.13 0.13
Matches are distributed among these distances:
11 5 0.23
12 8 0.36
13 9 0.41
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
ATATTATTTATTA
Found at i:14821974 original size:24 final size:24
Alignment explanation
Indices: 14821925--14821974 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
14821915 ACTCAATTTG
**
14821925 AATATATTATTTATTAATATTTTA
1 AATATATTATTTATTAATATAATA
14821949 AATATATTATTTATTAATATAATA
1 AATATATTATTTATTAATATAATA
14821973 AA
1 AA
14821975 ATCTTCAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (24 bp):
AATATATTATTTATTAATATAATA
Found at i:14833159 original size:31 final size:32
Alignment explanation
Indices: 14833124--14833184 Score: 81
Period size: 31 Copynumber: 1.9 Consensus size: 32
14833114 TATATCGTAT
* *
14833124 TTTATATTAAAAT-T-ATATATCATAATTTTTA
1 TTTATATAAAAATATAAAATAT-ATAATTTTTA
14833155 TTTATATAAAAATATAAAATATATAATTTT
1 TTTATATAAAAATATAAAATATATAATTTT
14833185 GGATTTTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
31 12 0.46
32 9 0.35
33 5 0.19
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (32 bp):
TTTATATAAAAATATAAAATATATAATTTTTA
Found at i:14834247 original size:13 final size:13
Alignment explanation
Indices: 14834231--14834271 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
14834221 ATTTATTTTT
*
14834231 TTATTTTCATATA
1 TTATTTTAATATA
14834244 TTATTTTAATATA
1 TTATTTTAATATA
**
14834257 AAATTTTAATATA
1 TTATTTTAATATA
14834270 TT
1 TT
14834272 TAAGTAAATT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (13 bp):
TTATTTTAATATA
Found at i:14834338 original size:17 final size:18
Alignment explanation
Indices: 14834307--14834346 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
14834297 ATTTTTATTT
*
14834307 TATAAAAATTAAAAAATA
1 TATAAAAACTAAAAAATA
14834325 TATAAAAACT-AAAAATA
1 TATAAAAACTAAAAAATA
14834342 TATAA
1 TATAA
14834347 TTTGATTTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (18 bp):
TATAAAAACTAAAAAATA
Found at i:14834420 original size:13 final size:13
Alignment explanation
Indices: 14834400--14834434 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
14834390 ATTTCGATCC
14834400 AAATTTAATATAT
1 AAATTTAATATAT
* *
14834413 ATATTTAATATTT
1 AAATTTAATATAT
14834426 AAATTTAAT
1 AAATTTAAT
14834435 TTGAATCAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (13 bp):
AAATTTAATATAT
Found at i:14837801 original size:2 final size:2
Alignment explanation
Indices: 14837794--14837827 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
14837784 ATTAATTCTG
* *
14837794 AT AT AT AT AT AT AT AT AT GT AT AT AA AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14837828 TTTATTAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:14840764 original size:244 final size:240
Alignment explanation
Indices: 14840058--14840772 Score: 979
Period size: 233 Copynumber: 3.0 Consensus size: 240
14840048 GGGGCAAATA
* *
14840058 GAAACCAATCACTAG-CAAAATATGCAAACAGCCAGTTATAAAAGAAAGATAATCCTCATGTAGG
1 GAAACCAATCACTAGCCAAAATATGCAAACAGCCAGTTATAAAAGAAAGAAAATTCTCATGTAGG
*
14840122 ACTTCAACAAATGTGAAACCTTCTTTGTTTTTCAAGCACTCGGATCATACAATAACCCAAAGCAA
66 ACTTCAACAAATGTGAAACCTT-TTTGTTTTTCAAGCACTTGGATCATACAATAACCC-AAGCAA
* * * *
14840187 TTAGCAATCCCCCCTTTCCCCCACCCCACCCTGAGCCATGAAACTTTGAAGTAATTGAAAATAAG
129 --AGCAATCCCCCCTTTCCCCCA-CCCACCCTGAGCCATGAAACTTTAAAGCACTTGCAAATAAG
**
14840252 T-TTTGTGGTTTCACATACCACAGCTATGAAACAACAGCTACACTTGATAT
191 TGTTT-TGGTTTCACATACCACAGCTATGAAACAACAGCTACACTCCATAT
*
14840302 GAAACCAATCACTAGCCAAAATATGCAAGA-AGCCAGTTATAAAAGAAAGAGAATTCTCATGTAG
1 GAAACCAATCACTAGCCAAAATATGCAA-ACAGCCAGTTATAAAAGAAAGAAAATTCTCATGTAG
* **
14840366 GACTTCAACAAAAGTGAAACC--TTTGTTTTTTGAGCACTCT-G-TCATACAATAA-CC---CAA
65 GACTTCAACAAATGTGAAACCTTTTTGTTTTTCAAGCACT-TGGATCATACAATAACCCAAGCAA
* * * **
14840423 AGCAATACCCCC-TTCGCCCATCCCATCCTGAGCCATGAAACCATAAAGCACTTGCAAATAAGTG
129 AGCAATCCCCCCTTTCCCCCA-CCCACCCTGAGCCATGAAACTTTAAAGCACTTGCAAATAAGTG
* ** *
14840487 TTTTGGTTTCACATACCACATCTATTCAACAACAGCTACACTCCATGT
193 TTTTGGTTTCACATACCACAGCTATGAAACAACAGCTACACTCCATAT
*
14840535 GAAACCAATCACTAGCCAAAATATGCAACCAGCCAGTTATAAAAG-AAGAAAATTCTCATGTAGG
1 GAAACCAATCACTAGCCAAAATATGCAAACAGCCAGTTATAAAAGAAAGAAAATTCTCATGTAGG
* *
14840599 ACTTCAATAAATGTGAAACCTTATTTGTTTTTCCAGCACTTGGATCATACAATAACCCAGAGCAA
66 ACTTCAACAAATGTGAAACCTT-TTTGTTTTTCAAGCACTTGGATCATACAATAACCCA-AGCAA
*
14840664 CGAGCAATCCCCCCTTTCCCCCACCTCACCCTGAGCCATGAAACTTTAAAGCACTAGCAAATAAG
129 --AGCAATCCCCCCTTTCCCCCACC-CACCCTGAGCCATGAAACTTTAAAGCACTTGCAAATAAG
14840729 TGTTTTGGTTTCACATACCACAGCTATGAAACAACAGCTACACT
191 TGTTTTGGTTTCACATACCACAGCTATGAAACAACAGCTACACT
14840773 ATATGCTTTT
Statistics
Matches: 415, Mismatches: 37, Indels: 38
0.85 0.08 0.08
Matches are distributed among these distances:
232 36 0.09
233 124 0.30
234 15 0.04
235 16 0.04
236 14 0.03
237 2 0.00
240 2 0.00
241 14 0.03
242 16 0.04
243 13 0.03
244 98 0.24
245 64 0.15
246 1 0.00
ACGTcount: A:0.37, C:0.26, G:0.13, T:0.24
Consensus pattern (240 bp):
GAAACCAATCACTAGCCAAAATATGCAAACAGCCAGTTATAAAAGAAAGAAAATTCTCATGTAGG
ACTTCAACAAATGTGAAACCTTTTTGTTTTTCAAGCACTTGGATCATACAATAACCCAAGCAAAG
CAATCCCCCCTTTCCCCCACCCACCCTGAGCCATGAAACTTTAAAGCACTTGCAAATAAGTGTTT
TGGTTTCACATACCACAGCTATGAAACAACAGCTACACTCCATAT
Found at i:14847870 original size:39 final size:42
Alignment explanation
Indices: 14847773--14847866 Score: 143
Period size: 42 Copynumber: 2.2 Consensus size: 42
14847763 AATTAAATTA
* * * *
14847773 AAATCATAATAATTCTTTTCATATTTTTGTTTTTTTTAAAAG
1 AAATAATAATAATTTTTTTCATACTGTTGTTTTTTTTAAAAG
*
14847815 AAATAATAATAATTTTTTTCATACTGTTGTTTTTTTAAAAAG
1 AAATAATAATAATTTTTTTCATACTGTTGTTTTTTTTAAAAG
14847857 AAATAATAAT
1 AAATAATAAT
14847867 TTTTAATTTA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.50
Consensus pattern (42 bp):
AAATAATAATAATTTTTTTCATACTGTTGTTTTTTTTAAAAG
Found at i:14850396 original size:46 final size:46
Alignment explanation
Indices: 14850343--14850435 Score: 168
Period size: 46 Copynumber: 2.0 Consensus size: 46
14850333 CTTCAGATCA
* *
14850343 TCTCATTTTCTTTGTTTTAAGATGACTTTTGTTTGGACACTGTTAC
1 TCTCATTTTCTTTGTTTTAAGACGACTTTTGTATGGACACTGTTAC
14850389 TCTCATTTTCTTTGTTTTAAGACGACTTTTGTATGGACACTGTTAC
1 TCTCATTTTCTTTGTTTTAAGACGACTTTTGTATGGACACTGTTAC
14850435 T
1 T
14850436 TAAGTGTTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.18, C:0.16, G:0.15, T:0.51
Consensus pattern (46 bp):
TCTCATTTTCTTTGTTTTAAGACGACTTTTGTATGGACACTGTTAC
Found at i:14851769 original size:392 final size:387
Alignment explanation
Indices: 14851038--14851816 Score: 1373
Period size: 392 Copynumber: 2.0 Consensus size: 387
14851028 GTTGTATCTC
* *
14851038 TGTGCTTGAGCATGCATGTGCGTTCTTTATTTCTAGTTTGATCACATTGGTACTATTTTTTATCA
1 TGTGCTGGAGCATGCATGTGCATTCTTTATTTCTAGTTTGATCACATTGGTACTATTTTTTATCA
14851103 TGCCAGTGATTAGCTTGTCATATTTAAGCATCTCAGTCTTATATGCTTTTCTTTTGTTAGGAATG
66 TGCCAGTGATTAGCTTGTCATATTTAAGCATCTCAGTCTTATATGCTTTTCTTTTGTTAGGAATG
*
14851168 CATGTTGGCATGCTCTTTTAAAGGTGATGCATGCCTTCCCTGTTGTTTTTATTTGTTCCCTTTTT
131 CATGTTGGCATGCTCTTTTAAAGATGATGCATGCCTTCCCTGTTGTTTTTATTTGTTCCCTTTTT
*
14851233 TCTTCTTTTCAAGTTGGTTGCACCTCCTTCCAACTGTTAAAATCTAATATAATGTTTGTTGCCTT
196 TCTTCTTTTCAAGCTGGTTGCACCTCCTTCCAACTGTTAAAATCTAATATAATGTTTGTTGCCTT
14851298 GCTGGTATGTCTTGATTCTGGGCCAGTTAATTAACTAAAAGTAGCAACTTTTAGTTTTTATGAAA
261 GCTGGTATGTCTTGATTCTGGGCCAGTTAATTAACTAAAAGTAGCAACTTTTAGTTTTTATGAAA
* * * * *
14851363 GATAAATGTTAGTACTCTGGTTCAGATGTAATTTTAGCTGAGACTTCATGTTTATGCAGTTATG
326 AATAAATATTAGTACTCTGGTTCAGACGTAATTTTAGCTCAGAC--AATGTTTATGCAGTTATG
14851427 TGTGCTGGAGCATGCATGTGCATTCTTTATTTCTAGTTTGA-CAACATTGGTACTATTTTTTTTA
1 TGTGCTGGAGCATGCATGTGCATTCTTTATTTCTAGTTTGATC-ACATTGGTACTA--TTTTTTA
* *
14851491 TCATGCCAGTGATTAGCTTGTCATGTTTAAGTATCTCAGTCTTATATGCTTTTCTTTTGTT-GGA
63 TCATGCCAGTGATTAGCTTGTCATATTTAAGCATCTCAGTCTTATATGCTTTTCTTTTGTTAGG-
*
14851555 AATGCATGTTGGCATGCTCTTTTAAAGATGATGCATGCCTTCTCTGTTGTTTTTATTTGTTTCCC
127 AATGCATGTTGGCATGCTCTTTTAAAGATGATGCATGCCTTCCCTGTTGTTTTTATTTG-TTCCC
14851620 TTTTTTCTTCTTTTCAAGCTGGTTGCACCTCCTTCCAACTGTTAAAATCTAATATAATGTTTGTT
191 TTTTTTCTTCTTTTCAAGCTGGTTGCACCTCCTTCCAACTGTTAAAATCTAATATAATGTTTGTT
14851685 GCCTTGCTGGTATGTCTTGATTCTGGGCCAGTTAATTAACTAAAAGTAGCAACTTTTAGTTTTTA
256 GCCTTGCTGGTATGTCTTGATTCTGGGCCAGTTAATTAACTAAAAGTAGCAACTTTTAGTTTTTA
14851750 TGAAAAATAAATATTAGTACTCTGGTTCAGACGTAATTTTAGCTCAGACAATGTTTATGCAGTTA
321 TGAAAAATAAATATTAGTACTCTGGTTCAGACGTAATTTTAGCTCAGACAATGTTTATGCAGTTA
14851815 TG
386 TG
14851817 CAATCTTGAT
Statistics
Matches: 373, Mismatches: 12, Indels: 9
0.95 0.03 0.02
Matches are distributed among these distances:
388 1 0.00
389 51 0.14
390 19 0.05
391 123 0.33
392 179 0.48
ACGTcount: A:0.22, C:0.16, G:0.18, T:0.44
Consensus pattern (387 bp):
TGTGCTGGAGCATGCATGTGCATTCTTTATTTCTAGTTTGATCACATTGGTACTATTTTTTATCA
TGCCAGTGATTAGCTTGTCATATTTAAGCATCTCAGTCTTATATGCTTTTCTTTTGTTAGGAATG
CATGTTGGCATGCTCTTTTAAAGATGATGCATGCCTTCCCTGTTGTTTTTATTTGTTCCCTTTTT
TCTTCTTTTCAAGCTGGTTGCACCTCCTTCCAACTGTTAAAATCTAATATAATGTTTGTTGCCTT
GCTGGTATGTCTTGATTCTGGGCCAGTTAATTAACTAAAAGTAGCAACTTTTAGTTTTTATGAAA
AATAAATATTAGTACTCTGGTTCAGACGTAATTTTAGCTCAGACAATGTTTATGCAGTTATG
Found at i:14862110 original size:2 final size:2
Alignment explanation
Indices: 14862097--14862131 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
14862087 TCAAATTGTC
*
14862097 AT AT AC AT AT AT AT AT AT AT AT AT AT A- AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14862132 TAAAAGTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:14862442 original size:31 final size:31
Alignment explanation
Indices: 14862381--14862442 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
14862371 TCTAAATCCG
* *
14862381 AATTCGATTCGATATTATATAAATCGTATTT
1 AATTCGATTCGAAATTATATAAATAGTATTT
*
14862412 AATTCGATTCGAAATTA-ATAAAATATTATTT
1 AATTCGATTCGAAATTATAT-AAATAGTATTT
14862443 TTTTAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 2 0.07
31 25 0.93
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (31 bp):
AATTCGATTCGAAATTATATAAATAGTATTT
Found at i:14862466 original size:8 final size:8
Alignment explanation
Indices: 14862446--14862486 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
14862436 ATTATTTTTT
14862446 TAAA-ATA
1 TAAATATA
*
14862453 TAAATATT
1 TAAATATA
14862461 TAAATATA
1 TAAATATA
*
14862469 TAATTATA
1 TAAATATA
14862477 TAAATATA
1 TAAATATA
14862485 TA
1 TA
14862487 TAAATAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
7 4 0.14
8 25 0.86
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (8 bp):
TAAATATA
Found at i:14862499 original size:26 final size:24
Alignment explanation
Indices: 14862450--14862500 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 24
14862440 TTTTTTTAAA
* *
14862450 ATATAAATATTTAAATATATAATT
1 ATATAAATATTTAAATAAAAAATT
14862474 ATATAAATATATATAAATAAAAAATT
1 ATATAAATAT-T-TAAATAAAAAATT
14862500 A
1 A
14862501 ATTTAAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 10 0.43
25 1 0.04
26 12 0.52
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (24 bp):
ATATAAATATTTAAATAAAAAATT
Found at i:14863371 original size:4 final size:4
Alignment explanation
Indices: 14863362--14863395 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
14863352 TATTATTATT
*
14863362 TTTC TTTC -TTC TTTC TTTC TTTC CTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT
14863396 TTCCTTTTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
3 3 0.11
4 24 0.89
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTC
Found at i:14863375 original size:7 final size:7
Alignment explanation
Indices: 14863363--14863412 Score: 59
Period size: 7 Copynumber: 7.0 Consensus size: 7
14863353 ATTATTATTT
14863363 TTCTTTC
1 TTCTTTC
14863370 TTCTTTC
1 TTCTTTC
14863377 TTTCTTTCC
1 -TTCTTT-C
14863386 TTCTTTC
1 TTCTTTC
14863393 TT-TTTCC
1 TTCTTT-C
14863400 TT-TTTC
1 TTCTTTC
14863406 TTCTTTC
1 TTCTTTC
14863413 CTTATCCGGT
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
6 6 0.15
7 20 0.51
8 12 0.31
9 1 0.03
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (7 bp):
TTCTTTC
Found at i:14863408 original size:20 final size:23
Alignment explanation
Indices: 14863363--14863412 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
14863353 ATTATTATTT
*
14863363 TTCTTTCTTCTTTCTTTCTTTCC
1 TTCTTTCTTCTTTCCTTCTTTCC
14863386 TTCTTTCTT-TTTCCTT-TTT-C
1 TTCTTTCTTCTTTCCTTCTTTCC
14863406 TTCTTTC
1 TTCTTTC
14863413 CTTATCCGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 8 0.31
21 3 0.12
22 6 0.23
23 9 0.35
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (23 bp):
TTCTTTCTTCTTTCCTTCTTTCC
Found at i:14863574 original size:23 final size:23
Alignment explanation
Indices: 14863541--14863590 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
14863531 ATTTTGGGTT
*
14863541 AAAAATATGAGATTTGAATCTCA
1 AAAAATATGAGATTTAAATCTCA
* *
14863564 AAAAATTTGAGATTTAAATCTTA
1 AAAAATATGAGATTTAAATCTCA
14863587 AAAA
1 AAAA
14863591 GCTCTATAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.52, C:0.06, G:0.10, T:0.32
Consensus pattern (23 bp):
AAAAATATGAGATTTAAATCTCA
Found at i:14864530 original size:19 final size:19
Alignment explanation
Indices: 14864508--14864546 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
14864498 ATTAATTTTT
14864508 AAAATAAACTTTAAAAATAA
1 AAAATAAAC-TTAAAAATAA
* *
14864528 AAAACAAACTTAATAATAA
1 AAAATAAACTTAAAAATAA
14864547 TAATAAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.23
Consensus pattern (19 bp):
AAAATAAACTTAAAAATAA
Found at i:14871316 original size:20 final size:23
Alignment explanation
Indices: 14871272--14871321 Score: 70
Period size: 20 Copynumber: 2.3 Consensus size: 23
14871262 GACATTTTTA
*
14871272 TTATTTTTGTATTATTATTAAGT
1 TTATTTTTGTATTATTATAAAGT
14871295 TTATTTTT-TATT-TT-TAAAGT
1 TTATTTTTGTATTATTATAAAGT
14871315 TTATTTT
1 TTATTTT
14871322 AGAAATTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 12 0.46
21 2 0.08
22 4 0.15
23 8 0.31
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.70
Consensus pattern (23 bp):
TTATTTTTGTATTATTATAAAGT
Found at i:14872332 original size:25 final size:25
Alignment explanation
Indices: 14872304--14872359 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
14872294 ATATTTAAAT
14872304 TATAAATTTATTAAATAATATAATA
1 TATAAATTTATTAAATAATATAATA
*
14872329 TATAAATTTATTAACTAATATAATA
1 TATAAATTTATTAAATAATATAATA
*
14872354 TTTAAA
1 TATAAA
14872360 AATTTTGTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
TATAAATTTATTAAATAATATAATA
Found at i:14872558 original size:15 final size:16
Alignment explanation
Indices: 14872531--14872564 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14872521 TTTTTTTATT
14872531 TTTATATAAAAAAATTA
1 TTTATA-AAAAAAATTA
*
14872548 TTTATAGAAAAAATTA
1 TTTATAAAAAAAATTA
14872564 T
1 T
14872565 ATTTATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (16 bp):
TTTATAAAAAAAATTA
Found at i:14872560 original size:16 final size:15
Alignment explanation
Indices: 14872535--14872564 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
14872525 TTTATTTTTA
14872535 TATAAAAAAATTATT
1 TATAAAAAAATTATT
14872550 TATAGAAAAAATTAT
1 TATA-AAAAAATTAT
14872565 ATTTATTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (15 bp):
TATAAAAAAATTATT
Found at i:14872567 original size:18 final size:18
Alignment explanation
Indices: 14872526--14872570 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
14872516 ATATATTTTT
* *
14872526 TTATTTTTATATAAAAAA
1 TTATATTTATAGAAAAAA
*
14872544 AT-TATTTATAGAAAAAA
1 TTATATTTATAGAAAAAA
14872561 TTATATTTAT
1 TTATATTTAT
14872571 TAAAGCATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
17 14 0.64
18 8 0.36
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (18 bp):
TTATATTTATAGAAAAAA
Found at i:14878062 original size:18 final size:19
Alignment explanation
Indices: 14878002--14878059 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 19
14877992 TTTATTTTAT
14878002 AAATAATTAAATCAATCAA
1 AAATAATTAAATCAATCAA
** * *
14878021 AAATTTTTAAAT-AAACGA
1 AAATAATTAAATCAATCAA
**
14878039 TCATAATTAAATCAATCAA
1 AAATAATTAAATCAATCAA
14878058 AA
1 AA
14878060 TAAATTGATT
Statistics
Matches: 26, Mismatches: 12, Indels: 2
0.65 0.30 0.05
Matches are distributed among these distances:
18 12 0.46
19 14 0.54
ACGTcount: A:0.59, C:0.10, G:0.02, T:0.29
Consensus pattern (19 bp):
AAATAATTAAATCAATCAA
Found at i:14878912 original size:28 final size:27
Alignment explanation
Indices: 14878871--14878925 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
14878861 TGTTAATTTC
* *
14878871 AAAATTAATAAATTTAGTTCAATTAAT
1 AAAAATAATAAATTTAATTCAATTAAT
*
14878898 AAAAATAATATAATTTAATTTAATTAAT
1 AAAAATAATA-AATTTAATTCAATTAAT
14878926 TTAATTTTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 9 0.38
28 15 0.62
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (27 bp):
AAAAATAATAAATTTAATTCAATTAAT
Found at i:14878925 original size:14 final size:15
Alignment explanation
Indices: 14878903--14878949 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
14878893 TTAATAAAAA
14878903 TAATATAATTTAATT
1 TAATATAATTTAATT
14878918 TAAT-TAATTTAATT
1 TAATATAATTTAATT
* * *
14878932 TTAGACAATTTAATT
1 TAATATAATTTAATT
14878947 TAA
1 TAA
14878950 AATTAATCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 12 0.44
15 15 0.56
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (15 bp):
TAATATAATTTAATT
Found at i:14883043 original size:18 final size:16
Alignment explanation
Indices: 14883020--14883072 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
14883010 TTTATATCAT
14883020 AATTAAAAATAATTATAA
1 AATTAAAAAT-A-TATAA
*
14883038 AATTAATAATATATAA
1 AATTAAAAATATATAA
*
14883054 AATTAATAAA-AAATAA
1 AATTAA-AAATATATAA
14883070 AAT
1 AAT
14883073 GTTAATAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
16 19 0.61
17 3 0.10
18 9 0.29
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
AATTAAAAATATATAA
Found at i:14883052 original size:16 final size:16
Alignment explanation
Indices: 14883027--14883072 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
14883017 CATAATTAAA
14883027 AATAAT-TATAAAATT
1 AATAATATATAAAATT
14883042 AATAATATATAAAATT
1 AATAATATATAAAATT
* *
14883058 AATAAAAAATAAAAT
1 AATAATATATAAAAT
14883073 GTTAATAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
15 6 0.21
16 22 0.79
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AATAATATATAAAATT
Found at i:14883874 original size:20 final size:20
Alignment explanation
Indices: 14883851--14883897 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
14883841 ATTAAAATTC
* *
14883851 AAAATGATTATAAAAATAAA
1 AAAATGATCATAAAAAAAAA
*
14883871 AAAAT-CTCATAAAAAAAAA
1 AAAATGATCATAAAAAAAAA
14883890 AACAATGA
1 AA-AATGA
14883898 AACCCTAGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.70, C:0.06, G:0.04, T:0.19
Consensus pattern (20 bp):
AAAATGATCATAAAAAAAAA
Found at i:14887114 original size:2 final size:2
Alignment explanation
Indices: 14887101--14887136 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
14887091 TCAAGGAAAC
*
14887101 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14887137 CAAATTTAGC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:14888670 original size:22 final size:23
Alignment explanation
Indices: 14888635--14888685 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
14888625 AATTATTTTT
*
14888635 TATAT-AAA-TTTATTTAAAT-A
1 TATATAAAATTTTATTAAAATAA
*
14888655 TATTTAAAATTTTATTAAAATAA
1 TATATAAAATTTTATTAAAATAA
14888678 TATATAAA
1 TATATAAA
14888686 TATAAAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 4 0.16
21 3 0.12
22 10 0.40
23 8 0.32
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (23 bp):
TATATAAAATTTTATTAAAATAA
Found at i:14903854 original size:16 final size:15
Alignment explanation
Indices: 14903831--14903861 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
14903821 TATTTGAAAA
14903831 TTTTTTTTTCTTTTT
1 TTTTTTTTTCTTTTT
14903846 TTTTATTTTTCTTTTT
1 TTTT-TTTTTCTTTTT
14903862 CAAAAATACC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.03, C:0.06, G:0.00, T:0.90
Consensus pattern (15 bp):
TTTTTTTTTCTTTTT
Found at i:14903937 original size:12 final size:13
Alignment explanation
Indices: 14903891--14903930 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
14903881 TTTTTTTTTC
*
14903891 AAAAATAAAATCA
1 AAAAATAAAATAA
*
14903904 AAAAAT-AATTAA
1 AAAAATAAAATAA
14903916 AAAAATAAAATAA
1 AAAAATAAAATAA
14903929 AA
1 AA
14903931 TAAAAAACCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
12 10 0.43
13 13 0.57
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (13 bp):
AAAAATAAAATAA
Found at i:14908370 original size:14 final size:16
Alignment explanation
Indices: 14908351--14908383 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
14908341 AAAATTATAA
14908351 TATATTTT-AT-TTTT
1 TATATTTTAATATTTT
14908365 TATATTTTAATATTTT
1 TATATTTTAATATTTT
14908381 TAT
1 TAT
14908384 TATATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 2 0.12
16 7 0.41
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (16 bp):
TATATTTTAATATTTT
Found at i:14909622 original size:17 final size:17
Alignment explanation
Indices: 14909600--14909633 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14909590 TTTCTCTCTA
*
14909600 CTTTCTTGGTTTTTCTT
1 CTTTCTTAGTTTTTCTT
*
14909617 CTTTCTTATTTTTTCTT
1 CTTTCTTAGTTTTTCTT
14909634 GGTTTGTGAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.03, C:0.18, G:0.06, T:0.74
Consensus pattern (17 bp):
CTTTCTTAGTTTTTCTT
Found at i:14919029 original size:17 final size:17
Alignment explanation
Indices: 14919007--14919060 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
14918997 ATAAAATAAA
14919007 TAATAAATATTATTATT
1 TAATAAATATTATTATT
* *
14919024 TAATAAATGTAATTAATT
1 TAATAAATATTATT-ATT
* *
14919042 AAATAATAAATTATTATT
1 TAATAA-ATATTATTATT
14919060 T
1 T
14919061 TAATCTTAAG
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
17 12 0.43
18 11 0.39
19 5 0.18
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (17 bp):
TAATAAATATTATTATT
Found at i:14920323 original size:14 final size:15
Alignment explanation
Indices: 14920293--14920331 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
14920283 TGAAATAATA
* *
14920293 TTATAAGTTTAAGAT
1 TTATAATTTTAACAT
14920308 TTA-AATTTTAACAT
1 TTATAATTTTAACAT
14920322 TTATAATTTT
1 TTATAATTTT
14920332 TTTATTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.54
Consensus pattern (15 bp):
TTATAATTTTAACAT
Found at i:14926646 original size:2 final size:2
Alignment explanation
Indices: 14926641--14926670 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
14926631 GTTTTTTTTA
14926641 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14926671 TCGTTCTAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14932441 original size:13 final size:12
Alignment explanation
Indices: 14932434--14932488 Score: 65
Period size: 13 Copynumber: 4.3 Consensus size: 12
14932424 AATTATATTC
14932434 AAATATTAAATGT
1 AAATATTAAAT-T
14932447 AAATATTAAATT
1 AAATATTAAATT
*
14932459 AAAATATAAAAATT
1 -AAATAT-TAAATT
*
14932473 AAAAATTAAATT
1 AAATATTAAATT
14932485 AAAT
1 AAAT
14932489 TATATATTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
12 9 0.25
13 22 0.61
14 5 0.14
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.35
Consensus pattern (12 bp):
AAATATTAAATT
Found at i:14932463 original size:26 final size:26
Alignment explanation
Indices: 14932423--14932492 Score: 79
Period size: 26 Copynumber: 2.7 Consensus size: 26
14932413 TATTTAATTT
* * *
14932423 AAATTATATTCAAATAT-TAAATGTAA
1 AAATTAAATTAAAATATAAAAAT-TAA
*
14932449 ATATTAAATTAAAATATAAAAATTAA
1 AAATTAAATTAAAATATAAAAATTAA
*
14932475 AAATTAAATTAAATTATA
1 AAATTAAATTAAAATATA
14932493 TATTTTTATT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
26 33 0.89
27 4 0.11
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (26 bp):
AAATTAAATTAAAATATAAAAATTAA
Found at i:14944182 original size:11 final size:11
Alignment explanation
Indices: 14944150--14944187 Score: 53
Period size: 10 Copynumber: 3.5 Consensus size: 11
14944140 ATAAAAATAG
14944150 ATTTTATATAA
1 ATTTTATATAA
14944161 TATTTTA-ATAA
1 -ATTTTATATAA
14944172 ATTTTATAT-A
1 ATTTTATATAA
14944182 ATTTTA
1 ATTTTA
14944188 AAATTTAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 13 0.52
11 6 0.24
12 6 0.24
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (11 bp):
ATTTTATATAA
Found at i:14945500 original size:19 final size:19
Alignment explanation
Indices: 14945460--14945517 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 19
14945450 TATTTTTTAA
*
14945460 ATATAAA-AT-TAAATAA-
1 ATATAAATATATAAAAAAT
14945476 ATATAAATATATAAAAAAT
1 ATATAAATATATAAAAAAT
* *
14945495 ATATAATTA-ATTAAAAAT
1 ATATAAATATATAAAAAAT
14945513 A-ATAA
1 ATATAA
14945518 TTTATATATA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
16 7 0.19
17 6 0.17
18 15 0.42
19 8 0.22
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
ATATAAATATATAAAAAAT
Found at i:14946089 original size:21 final size:22
Alignment explanation
Indices: 14946046--14946089 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
14946036 GATTTGTTAA
*
14946046 TAATATATAAAAATTTTAGTTT
1 TAATATATAAAAATTTAAGTTT
* *
14946068 TAATA-ATCAAAATTTAATTTT
1 TAATATATAAAAATTTAAGTTT
14946089 T
1 T
14946090 GATAGTTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (22 bp):
TAATATATAAAAATTTAAGTTT
Found at i:14946951 original size:26 final size:27
Alignment explanation
Indices: 14946901--14946967 Score: 79
Period size: 26 Copynumber: 2.6 Consensus size: 27
14946891 TGGTAATATT
* *
14946901 ATAAAAAATAT-TGT-AAGTAATTAAA
1 ATAAAAAATATATATAAAATAATTAAA
14946926 ATAAAAAATATATATAAAATAA-TAAA
1 ATAAAAAATATATATAAAATAATTAAA
14946952 ATATAAAAATA-ATATA
1 ATA-AAAAATATATATA
14946968 GTAATTTTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
25 11 0.30
26 14 0.38
27 12 0.32
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (27 bp):
ATAAAAAATATATATAAAATAATTAAA
Found at i:14946963 original size:21 final size:18
Alignment explanation
Indices: 14946922--14946958 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
14946912 TGTAAGTAAT
*
14946922 TAAAATAAAAAATATATA
1 TAAAATAAAAAATATAAA
14946940 TAAAATAATAAAATATAAA
1 TAAAATAA-AAAATATAAA
14946959 AATAATATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (18 bp):
TAAAATAAAAAATATAAA
Found at i:14947592 original size:15 final size:14
Alignment explanation
Indices: 14947568--14947597 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
14947558 TATCATTGAA
14947568 TATTTTATTTATTT
1 TATTTTATTTATTT
14947582 TATTATTATTTATTT
1 TATT-TTATTTATTT
14947597 T
1 T
14947598 TAAAAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (14 bp):
TATTTTATTTATTT
Found at i:14950359 original size:30 final size:30
Alignment explanation
Indices: 14950319--14950375 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
14950309 ATAGTTTTAA
14950319 ATCATATTTAACTAT-TATTTTATAATTTTTT
1 ATCATATTTAA-TATATATTTTA-AATTTTTT
14950350 ATCAT-TTTAATATATATTTTAAATTT
1 ATCATATTTAATATATATTTTAAATTT
14950376 ATTTTAAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
29 8 0.32
30 12 0.48
31 5 0.20
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (30 bp):
ATCATATTTAATATATATTTTAAATTTTTT
Found at i:14951368 original size:109 final size:110
Alignment explanation
Indices: 14951177--14951381 Score: 322
Period size: 109 Copynumber: 1.9 Consensus size: 110
14951167 TAATAAAAAT
* *
14951177 GATGGATCAAGTCCCAACTGACCAATCATATGGACTATCTCTTTATGTAAAATATTTGTGAAAAA
1 GATGGATCAAGTCCCAACTGACCAACCATATGGACTATCTCTTTATGTAAAACATTTGTGAAAAA
*
14951242 ATTACAATACATGATTATACACTTAC-CATAAAAAAGTCATTATA
66 ATTACAATAAATGATTATACACTTACACATAAAAAAGTCATTATA
* * * * * *
14951286 GATGGATCAAGTCCTAACTGACTAACCATGTGGAGTATCTTTTTATGTAAAACATTTGTGAAGAA
1 GATGGATCAAGTCCCAACTGACCAACCATATGGACTATCTCTTTATGTAAAACATTTGTGAAAAA
14951351 ATTACAATAAATGATTATACACTTACACATA
66 ATTACAATAAATGATTATACACTTACACATA
14951382 TGATTATACA
Statistics
Matches: 86, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
109 82 0.95
110 4 0.05
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.32
Consensus pattern (110 bp):
GATGGATCAAGTCCCAACTGACCAACCATATGGACTATCTCTTTATGTAAAACATTTGTGAAAAA
ATTACAATAAATGATTATACACTTACACATAAAAAAGTCATTATA
Found at i:14951850 original size:17 final size:17
Alignment explanation
Indices: 14951823--14951869 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
14951813 CTAAACTATC
*
14951823 AAATATCTAAAT-CTTA
1 AAATATATAAATACTTA
*
14951839 ATAATATATAAATTACTTC
1 A-AATATATAAA-TACTTA
14951858 AAATATATAAAT
1 AAATATATAAAT
14951870 TATTTCAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 1 0.04
17 10 0.38
18 11 0.42
19 4 0.15
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (17 bp):
AAATATATAAATACTTA
Found at i:14951864 original size:18 final size:18
Alignment explanation
Indices: 14951841--14951878 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
14951831 AAATCTTAAT
14951841 AATATATAAATTACTTCA
1 AATATATAAATTACTTCA
*
14951859 AATATATAAATTATTTCA
1 AATATATAAATTACTTCA
14951877 AA
1 AA
14951879 ACAAATATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (18 bp):
AATATATAAATTACTTCA
Done.