Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25814696
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 122000 characters in sequence are not A, C, G, or T
File 78 of 126
Found at i:15857282 original size:21 final size:21
Alignment explanation
Indices: 15857258--15857305 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
15857248 AATTAATTTT
*
15857258 AAATTTTTAG-AATTTTTGAAA
1 AAATTTTAAGAAATTTTT-AAA
*
15857279 AAA-TTTAAGAAATTTTTTAA
1 AAATTTTAAGAAATTTTTAAA
15857299 AAATTTT
1 AAATTTT
15857306 CAAGTTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 10 0.43
21 13 0.57
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.48
Consensus pattern (21 bp):
AAATTTTAAGAAATTTTTAAA
Found at i:15857285 original size:27 final size:26
Alignment explanation
Indices: 15857229--15857286 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
15857219 TTTATTTTTG
* *
15857229 TTAAATTTTTAATTTTTTAAATTAATT
1 TTAAATTTTTAATTTTTGAAA-TAAAT
15857256 TTAAATTTTTAGAATTTTTGAAA-AAAT
1 TTAAATTTTT--AATTTTTGAAATAAAT
15857283 TTAA
1 TTAA
15857287 GAAATTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 17 0.63
29 10 0.37
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.55
Consensus pattern (26 bp):
TTAAATTTTTAATTTTTGAAATAAAT
Found at i:15857370 original size:21 final size:21
Alignment explanation
Indices: 15857346--15857385 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
15857336 GTTTTCTTTT
* *
15857346 TTTTTTTCAAAAAATTTTAGA
1 TTTTTTTAAAAAAAATTTAGA
15857367 TTTTTTTAAAAAAAATTTA
1 TTTTTTTAAAAAAAATTTA
15857386 TAAGTTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (21 bp):
TTTTTTTAAAAAAAATTTAGA
Found at i:15857593 original size:19 final size:21
Alignment explanation
Indices: 15857571--15857609 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
15857561 ATTTTATAAG
15857571 TTTT-AAAA-ATATTTTAGAT
1 TTTTGAAAAGATATTTTAGAT
*
15857590 TTTTGAAAAGATTTTTTAGA
1 TTTTGAAAAGATATTTTAGA
15857610 AATTTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 4 0.24
21 9 0.53
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.51
Consensus pattern (21 bp):
TTTTGAAAAGATATTTTAGAT
Found at i:15860929 original size:27 final size:27
Alignment explanation
Indices: 15860899--15860955 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
15860889 AAACCTGGTT
15860899 GCGTTAGCGCATCTTCAGCTGGCATAG
1 GCGTTAGCGCATCTTCAGCTGGCATAG
*
15860926 GCGTTATCGCATCTTCAGCTGGCATAG
1 GCGTTAGCGCATCTTCAGCTGGCATAG
15860953 GCG
1 GCG
15860956 GCTGTTGGCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.26
Consensus pattern (27 bp):
GCGTTAGCGCATCTTCAGCTGGCATAG
Found at i:15861294 original size:14 final size:14
Alignment explanation
Indices: 15861275--15861302 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
15861265 CCTCCATCTT
15861275 TCAATTTCAAACAA
1 TCAATTTCAAACAA
15861289 TCAATTTCAAACAA
1 TCAATTTCAAACAA
15861303 ATGAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (14 bp):
TCAATTTCAAACAA
Found at i:15861987 original size:52 final size:52
Alignment explanation
Indices: 15861930--15862030 Score: 141
Period size: 52 Copynumber: 1.9 Consensus size: 52
15861920 TAAAATATTG
* * *
15861930 AAATTTTAAAGAAGACTTAGCGATA-ACTTTCAAACTTTACCAACTCTACCTC
1 AAATTTTAAAGAAGACTTAGC-AAAGACTTTCAAACTTCAACAACTCTACCTC
* *
15861982 AAATTTTAAAGAAGACTTTGCAAAGACTTTCGAACTTCAACAACTCTAC
1 AAATTTTAAAGAAGACTTAGCAAAGACTTTCAAACTTCAACAACTCTAC
15862031 AGTTTCACAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
51 2 0.05
52 41 0.95
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.30
Consensus pattern (52 bp):
AAATTTTAAAGAAGACTTAGCAAAGACTTTCAAACTTCAACAACTCTACCTC
Found at i:15866009 original size:104 final size:104
Alignment explanation
Indices: 15865892--15866163 Score: 325
Period size: 104 Copynumber: 2.6 Consensus size: 104
15865882 AGACCTCGGC
* * *
15865892 TATCGCCACCGAGAAAAAGATGTAAATGAATGACTTGAATACTCAGATATCACCACTGAA-TGAA
1 TATCACCATCGAGAAAAAGATGTAAATGAATTACTTGAATACTCAGATATCACCACT-AAGTGAA
* **
15865956 TACAAATGTCTTCGGATATCACCATTGAAAAGATATT-GAA
65 TACAAATGTCTTCGAATATCACCACCGAAAAGATATTAG-A
* * * *
15865996 TATCACTATCGAGAAAAAGATGTAAATGAATTACTTGGATACTTAGACATCACCACTAAGTGAAT
1 TATCACCATCGAGAAAAAGATGTAAATGAATTACTTGAATACTCAGATATCACCACTAAGTGAAT
* * * *
15866061 GCAAATGTCTTTGAATATCACCACCGAATAGATCTTAGA
66 ACAAATGTCTTCGAATATCACCACCGAAAAGATATTAGA
* * * * *
15866100 TATTACCATCGAAAAAAAGATGCACATAAATTACTTGAATACTCAGATATCACCA-TCAAGTGAA
1 TATCACCATCGAGAAAAAGATGTAAATGAATTACTTGAATACTCAGATATCACCACT-AAGTGAA
15866164 CGCCAATATT
Statistics
Matches: 142, Mismatches: 23, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
103 3 0.02
104 138 0.97
105 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.26
Consensus pattern (104 bp):
TATCACCATCGAGAAAAAGATGTAAATGAATTACTTGAATACTCAGATATCACCACTAAGTGAAT
ACAAATGTCTTCGAATATCACCACCGAAAAGATATTAGA
Found at i:15866565 original size:30 final size:31
Alignment explanation
Indices: 15866467--15866621 Score: 141
Period size: 31 Copynumber: 5.0 Consensus size: 31
15866457 AGTTAAATTG
* * *
15866467 GACTTAAATCTTATCAATGCTAGCTAAATTA
1 GACTTAAATCTCATCAATGCCAGCTAAACTA
* ** * *
15866498 GACTTAAATCTTATTGATGCCAACTCAACTA
1 GACTTAAATCTCATCAATGCCAGCTAAACTA
** *
15866529 GACTTAAATCTCATCGGTGCGAGCTAAACT-
1 GACTTAAATCTCATCAATGCCAGCTAAACTA
*
15866559 GACTTAAATCTCATCAGTGCCAGCTAAACTA
1 GACTTAAATCTCATCAATGCCAGCTAAACTA
* * * * **
15866590 GGCTTAATTATCATCGATGCCAAATAAACTA
1 GACTTAAATCTCATCAATGCCAGCTAAACTA
15866621 G
1 G
15866622 GCTGAGCTTT
Statistics
Matches: 102, Mismatches: 21, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
30 28 0.27
31 74 0.73
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (31 bp):
GACTTAAATCTCATCAATGCCAGCTAAACTA
Found at i:15866589 original size:61 final size:62
Alignment explanation
Indices: 15866467--15866609 Score: 155
Period size: 61 Copynumber: 2.3 Consensus size: 62
15866457 AGTTAAATTG
* * * * * * *
15866467 GACTTAAATCTTATCAATGCTAGCTAAATTAGACTTAAATCTTATTGATGCCAACTCAACTA
1 GACTTAAATCTCATCGATGCGAGCTAAACTAGACTTAAATCTCATAGATGCCAACTAAACTA
* *
15866529 GACTTAAATCTCATCGGTGCGAGCTAAACT-GACTTAAATCTCATCAG-TGCCAGCTAAACTA
1 GACTTAAATCTCATCGATGCGAGCTAAACTAGACTTAAATCTCAT-AGATGCCAACTAAACTA
* * *
15866590 GGCTTAATTATCATCGATGC
1 GACTTAAATCTCATCGATGC
15866610 CAAATAAACT
Statistics
Matches: 67, Mismatches: 13, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
61 41 0.61
62 26 0.39
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.31
Consensus pattern (62 bp):
GACTTAAATCTCATCGATGCGAGCTAAACTAGACTTAAATCTCATAGATGCCAACTAAACTA
Found at i:15866807 original size:31 final size:31
Alignment explanation
Indices: 15866697--15866852 Score: 91
Period size: 31 Copynumber: 5.0 Consensus size: 31
15866687 TTAAAATTTG
* * * * *
15866697 AGTGCCAATTAAACTGGGCTTAATTCACATT
1 AGTGCCAACTAAATTGGACTTAATTCTCATC
* * * * *
15866728 AATGCCAGCTAAATT-GATCTTAAAATCTTATT
1 AGTGCCAACTAAATTGGA-CTT-AATTCTCATC
* * *
15866760 AGT-ACATACTAAATTGGACTTAAATCTCATT
1 AGTGCCA-ACTAAATTGGACTTAATTCTCATC
* * * *
15866791 GGTGCCAACTAGATTGGGCTTAATTCTTATC
1 AGTGCCAACTAAATTGGACTTAATTCTCATC
* **
15866822 AGTGCCAACTACATTATACTTAATTCTCATC
1 AGTGCCAACTAAATTGGACTTAATTCTCATC
15866853 TCTTTCAAAG
Statistics
Matches: 95, Mismatches: 25, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
30 1 0.01
31 71 0.75
32 21 0.22
33 2 0.02
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (31 bp):
AGTGCCAACTAAATTGGACTTAATTCTCATC
Found at i:15867163 original size:21 final size:21
Alignment explanation
Indices: 15867134--15867177 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
15867124 CCATGATAGA
15867134 TTTTCTTCC-CTCTTTTTGTTT
1 TTTTCTTCCTCTCTTTTT-TTT
* *
15867155 TTTTTTTCCTTTCTTTTTTTT
1 TTTTCTTCCTCTCTTTTTTTT
15867176 TT
1 TT
15867178 ATGCAAACTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (21 bp):
TTTTCTTCCTCTCTTTTTTTT
Found at i:15877520 original size:36 final size:36
Alignment explanation
Indices: 15877479--15877551 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
15877469 AATTCAAAAG
15877479 ATGTTTTCATATAGTCAAGTTCAATTTACCACAGTT
1 ATGTTTTCATATAGTCAAGTTCAATTTACCACAGTT
15877515 ATGTTTTCATATAGTCAAGTTCAATTTACCACAGTT
1 ATGTTTTCATATAGTCAAGTTCAATTTACCACAGTT
15877551 A
1 A
15877552 CTTACAATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.41
Consensus pattern (36 bp):
ATGTTTTCATATAGTCAAGTTCAATTTACCACAGTT
Found at i:15879695 original size:28 final size:27
Alignment explanation
Indices: 15879663--15879715 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
15879653 ATTCGTTACT
* *
15879663 CGAGTCATTCTATAAATCCATATATTTG
1 CGAGTAATTATATAAAT-CATATATTTG
*
15879691 CGAGTAATTATATAACTCATATATT
1 CGAGTAATTATATAAATCATATATT
15879716 CACGAGTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 8 0.36
28 14 0.64
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (27 bp):
CGAGTAATTATATAAATCATATATTTG
Found at i:15879721 original size:27 final size:28
Alignment explanation
Indices: 15879663--15879723 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 28
15879653 ATTCGTTACT
* * **
15879663 CGAGTCATTCTATAAATCCATATATTTG
1 CGAGTAATTATATAAATCCATATATTCA
*
15879691 CGAGTAATTATATAACT-CATATATTCA
1 CGAGTAATTATATAAATCCATATATTCA
15879718 CGAGTA
1 CGAGTA
15879724 TTACCACATA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 14 0.50
28 14 0.50
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (28 bp):
CGAGTAATTATATAAATCCATATATTCA
Found at i:15887441 original size:13 final size:14
Alignment explanation
Indices: 15887414--15887442 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
15887404 ATATTTATTT
15887414 TATTTTATAAAATA
1 TATTTTATAAAATA
15887428 TATTTTAT-AAATA
1 TATTTTATAAAATA
15887441 TA
1 TA
15887443 AATATTTACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TATTTTATAAAATA
Found at i:15888041 original size:30 final size:29
Alignment explanation
Indices: 15887978--15888068 Score: 119
Period size: 30 Copynumber: 3.1 Consensus size: 29
15887968 AATTAAACCG
* * *
15887978 TTAAATCTTATTTTTATTTAATTGAGTTA
1 TTAAATATTATTTTTATTTAATTAAGTTT
*
15888007 TTAAATATCTATTTTTATTTAATTAAATTT
1 TTAAATAT-TATTTTTATTTAATTAAGTTT
*
15888037 TTAAATATTTATTTTCATTTAATTAAGTTT
1 TTAAATA-TTATTTTTATTTAATTAAGTTT
15888067 TT
1 TT
15888069 CAAAAATTGA
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
29 7 0.13
30 46 0.85
31 1 0.02
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.60
Consensus pattern (29 bp):
TTAAATATTATTTTTATTTAATTAAGTTT
Found at i:15889917 original size:23 final size:22
Alignment explanation
Indices: 15889874--15889917 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
15889864 TTAAATTTTA
* *
15889874 GCAAAAACCATATATGAGTTTG
1 GCAAAAACCAAATAAGAGTTTG
*
15889896 GCAAAAACCAAAATAAGTGTTT
1 GCAAAAACC-AAATAAGAGTTT
15889918 CGTATTTGAC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.45, C:0.14, G:0.16, T:0.25
Consensus pattern (22 bp):
GCAAAAACCAAATAAGAGTTTG
Found at i:15894722 original size:23 final size:23
Alignment explanation
Indices: 15894693--15894741 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
15894683 TGATTAATGT
15894693 ATAAATTTAAAAATT-AATATTTA
1 ATAAATTTAAAAATTAAAT-TTTA
* *
15894716 ATAAATTTAGAATTTAAATTTTA
1 ATAAATTTAAAAATTAAATTTTA
15894739 ATA
1 ATA
15894742 TTAATAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 20 0.87
24 3 0.13
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (23 bp):
ATAAATTTAAAAATTAAATTTTA
Found at i:15895396 original size:15 final size:16
Alignment explanation
Indices: 15895376--15895410 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
15895366 GTCATACCTC
*
15895376 TTAATTATAAAAT-AT
1 TTAATTAAAAAATCAT
15895391 TTAATTAAAAAATCAT
1 TTAATTAAAAAATCAT
15895407 TTAA
1 TTAA
15895411 CAATTGAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (16 bp):
TTAATTAAAAAATCAT
Found at i:15905426 original size:14 final size:15
Alignment explanation
Indices: 15905397--15905441 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 15
15905387 AATTTTTGTT
*
15905397 AATATTTTTATTAAA
1 AATATTTATATTAAA
15905412 AATATTTAT-TTAAA
1 AATATTTATATTAAA
* *
15905426 AATATATATATCAAA
1 AATATTTATATTAAA
15905441 A
1 A
15905442 TTTATTAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
14 13 0.50
15 13 0.50
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATATTTATATTAAA
Found at i:15905478 original size:20 final size:20
Alignment explanation
Indices: 15905438--15905478 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
15905428 TATATATATC
**
15905438 AAAATTTATTAAATTTTTTT
1 AAAATTTATTAAATTAATTT
*
15905458 AAAATTTATTAACTTAATTT
1 AAAATTTATTAAATTAATTT
15905478 A
1 A
15905479 TGTAATGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (20 bp):
AAAATTTATTAAATTAATTT
Found at i:15905526 original size:13 final size:13
Alignment explanation
Indices: 15905491--15905532 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
15905481 TAATGAAATC
15905491 TTTTAATTTATTAA
1 TTTTAATTT-TTAA
* *
15905505 TTTTGATTTTTTA
1 TTTTAATTTTTAA
15905518 TTTTAA-TTTTAA
1 TTTTAATTTTTAA
15905530 TTT
1 TTT
15905533 AATATTTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
12 8 0.33
13 8 0.33
14 8 0.33
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.71
Consensus pattern (13 bp):
TTTTAATTTTTAA
Found at i:15905538 original size:19 final size:19
Alignment explanation
Indices: 15905492--15905540 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
15905482 AATGAAATCT
*
15905492 TTTAAT-TTATTAATTTTGA
1 TTTAATATT-TTAATTTTAA
**
15905511 TTTTTTATTTTAATTTTAA
1 TTTAATATTTTAATTTTAA
15905530 TTTAATATTTT
1 TTTAATATTTT
15905541 TTAATAACAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
19 22 0.92
20 2 0.08
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (19 bp):
TTTAATATTTTAATTTTAA
Found at i:15906266 original size:15 final size:14
Alignment explanation
Indices: 15906246--15906279 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
15906236 TATTTCTAAA
*
15906246 TAAAAATTTAAAAT
1 TAAAAAATTAAAAT
15906260 GTAAAAAATTAAAAT
1 -TAAAAAATTAAAAT
15906275 TAAAA
1 TAAAA
15906280 TTATAAGGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (14 bp):
TAAAAAATTAAAAT
Found at i:15906492 original size:2 final size:2
Alignment explanation
Indices: 15906479--15906512 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
15906469 CTAAGTTAGA
*
15906479 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15906513 GAAACATGGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:15907060 original size:18 final size:19
Alignment explanation
Indices: 15907026--15907061 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
15907016 TATTCAATAG
15907026 TTTATAAAAATTTAATTTA
1 TTTATAAAAATTTAATTTA
*
15907045 TTTATAAATA-TTAATTT
1 TTTATAAAAATTTAATTT
15907062 CAAGATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
TTTATAAAAATTTAATTTA
Found at i:15911212 original size:11 final size:11
Alignment explanation
Indices: 15911196--15911234 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
15911186 AAATTTTAAA
15911196 TCATATTTTTT
1 TCATATTTTTT
15911207 TCATATTTTTT
1 TCATATTTTTT
* * *
15911218 TAATATTATAT
1 TCATATTTTTT
15911229 TCATAT
1 TCATAT
15911235 CATATCATCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (11 bp):
TCATATTTTTT
Found at i:15912068 original size:28 final size:29
Alignment explanation
Indices: 15912012--15912073 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 29
15912002 TTAAATTAGA
* *
15912012 ATAAAAATATTTAATTTGATACTTGAATT
1 ATAAAAATATTTAATGTGATACTTAAATT
* *
15912041 -TAAAAATTTTTAATGTGATATTTAAATT
1 ATAAAAATATTTAATGTGATACTTAAATT
15912069 ATAAA
1 ATAAA
15912074 TAAATTAACT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 24 0.86
29 4 0.14
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (29 bp):
ATAAAAATATTTAATGTGATACTTAAATT
Found at i:15912187 original size:27 final size:29
Alignment explanation
Indices: 15912157--15912225 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 29
15912147 TTTAAGTATT
15912157 ATATTA-ATTAACAAATTTAT-AA-TTTAA
1 ATATTATATTAA-AAATTTATAAATTTTAA
* *
15912184 ATATCATATTAAAAATTTTTAAATTTTAA
1 ATATTATATTAAAAATTTATAAATTTTAA
15912213 ATATTATATTAAA
1 ATATTATATTAAA
15912226 TCAAGATAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 12 0.33
28 7 0.19
29 17 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (29 bp):
ATATTATATTAAAAATTTATAAATTTTAA
Found at i:15914658 original size:19 final size:19
Alignment explanation
Indices: 15914634--15914673 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
15914624 GAAGGCAAGC
*
15914634 AAGGCCTGCAATCAAGGAA
1 AAGGCCTGCAATCAAAGAA
15914653 AAGGCCTGCAATCAAAGAA
1 AAGGCCTGCAATCAAAGAA
15914672 AA
1 AA
15914674 AAGTACAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.47, C:0.20, G:0.23, T:0.10
Consensus pattern (19 bp):
AAGGCCTGCAATCAAAGAA
Found at i:15928670 original size:19 final size:20
Alignment explanation
Indices: 15928646--15928710 Score: 75
Period size: 19 Copynumber: 3.4 Consensus size: 20
15928636 CGAATTCACA
15928646 AATATATAAA-TAAATAAAT
1 AATATATAAATTAAATAAAT
* *
15928665 AATATATAAATTAATTATAT
1 AATATATAAATTAAATAAAT
15928685 AA-ATA-AAATTTAAA-AAAT
1 AATATATAAA-TTAAATAAAT
15928703 AATATATA
1 AATATATA
15928711 TTTTTTAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
18 8 0.21
19 20 0.53
20 10 0.26
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
AATATATAAATTAAATAAAT
Found at i:15928719 original size:21 final size:21
Alignment explanation
Indices: 15928693--15928732 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
15928683 ATAAATAAAA
15928693 TTTAAAAAATAATATATATTT
1 TTTAAAAAATAATATATATTT
* *
15928714 TTTAAAAATTTATATATAT
1 TTTAAAAAATAATATATAT
15928733 ATATAAATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
TTTAAAAAATAATATATATTT
Found at i:15933717 original size:3 final size:3
Alignment explanation
Indices: 15933709--15933749 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
15933699 CCCAAAATTG
15933709 TAT TAT TAT TAT TAT TAT TAT TAT T-T TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
15933750 AGTTTTAGAT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:15933756 original size:20 final size:20
Alignment explanation
Indices: 15933709--15933749 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
15933699 CCCAAAATTG
15933709 TATTATTATTATTATTATTAT
1 TATT-TTATTATTATTATTAT
15933730 TATTTTATTATTATTATTAT
1 TATTTTATTATTATTATTAT
15933750 AGTTTTAGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TATTTTATTATTATTATTAT
Found at i:15933762 original size:6 final size:6
Alignment explanation
Indices: 15933753--15933797 Score: 63
Period size: 6 Copynumber: 7.5 Consensus size: 6
15933743 TTATTATAGT
* * *
15933753 TTTAGA TTTAGA TTTAGT TTTAGT TTTAGT TTTAGA TTTAGA TTT
1 TTTAGA TTTAGA TTTAGA TTTAGA TTTAGA TTTAGA TTTAGA TTT
15933798 TGTTTTTGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.60
Consensus pattern (6 bp):
TTTAGA
Found at i:15933772 original size:18 final size:18
Alignment explanation
Indices: 15933749--15933797 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
15933739 ATTATTATTA
15933749 TAGTTTTAGATTTAGATT
1 TAGTTTTAGATTTAGATT
* *
15933767 TAGTTTTAGTTTTAGTTT
1 TAGTTTTAGATTTAGATT
*
15933785 TAGATTTAGATTT
1 TAGTTTTAGATTT
15933798 TGTTTTTGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.59
Consensus pattern (18 bp):
TAGTTTTAGATTTAGATT
Found at i:15933783 original size:30 final size:30
Alignment explanation
Indices: 15933749--15933815 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 30
15933739 ATTATTATTA
15933749 TAGTTTTAGATTTAGATTTAGTTTTAGTTT
1 TAGTTTTAGATTTAGATTTAGTTTTAGTTT
* *
15933779 TAGTTTTAGATTTAGATTTTGTTTTTGTTT
1 TAGTTTTAGATTTAGATTTAGTTTTAGTTT
*
15933809 TTGTTTT
1 TAGTTTT
15933816 TTTTTTGTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.18, C:0.00, G:0.16, T:0.66
Consensus pattern (30 bp):
TAGTTTTAGATTTAGATTTAGTTTTAGTTT
Found at i:15933802 original size:18 final size:18
Alignment explanation
Indices: 15933753--15933803 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
15933743 TTATTATAGT
* * *
15933753 TTTAGATTTAGATTTAGT
1 TTTAGATTTTGTTTTAGA
15933771 TTTAG-TTTTAGTTTTAGA
1 TTTAGATTTT-GTTTTAGA
15933789 TTTAGATTTTGTTTT
1 TTTAGATTTTGTTTT
15933804 TGTTTTTGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
17 3 0.11
18 21 0.75
19 4 0.14
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.63
Consensus pattern (18 bp):
TTTAGATTTTGTTTTAGA
Found at i:15933804 original size:6 final size:6
Alignment explanation
Indices: 15933795--15933823 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
15933785 TAGATTTAGA
15933795 TTTTGT TTTTGT TTTTGT TTTT-T TTTTGT
1 TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT
15933824 AAAAAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (6 bp):
TTTTGT
Found at i:15933808 original size:24 final size:24
Alignment explanation
Indices: 15933749--15933809 Score: 88
Period size: 24 Copynumber: 2.5 Consensus size: 24
15933739 ATTATTATTA
*
15933749 TAGTTTTAGATTTAGATTTAGTTT
1 TAGTTTTAGTTTTAGATTTAGTTT
15933773 TAGTTTTAGTTTTAGATTTAGATTT
1 TAGTTTTAGTTTTAGATTTAG-TTT
*
15933798 T-GTTTTTGTTTT
1 TAGTTTTAGTTTT
15933810 TGTTTTTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
24 30 0.88
25 4 0.12
ACGTcount: A:0.20, C:0.00, G:0.16, T:0.64
Consensus pattern (24 bp):
TAGTTTTAGTTTTAGATTTAGTTT
Found at i:15934787 original size:21 final size:21
Alignment explanation
Indices: 15934763--15934803 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
15934753 TTGATTTAAT
*
15934763 TTTTTTAATTTTTAATTTTAG
1 TTTTTTAATTATTAATTTTAG
* *
15934784 TTTTTTTATTATTATTTTTA
1 TTTTTTAATTATTAATTTTA
15934804 ATTATGATTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (21 bp):
TTTTTTAATTATTAATTTTAG
Found at i:15940181 original size:2 final size:2
Alignment explanation
Indices: 15940174--15940205 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
15940164 TAGGTTTTCT
15940174 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15940206 AATAAGAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:15940726 original size:165 final size:166
Alignment explanation
Indices: 15940424--15940766 Score: 438
Period size: 165 Copynumber: 2.1 Consensus size: 166
15940414 TTGTTTATAT
* **
15940424 AATTTACTTACGTATTGTGTTTGCTTCACATGTAGTATTCAAAATAATTTCAAGTAATTTACATT
1 AATTTACTTATGTATTGCATTTGCTTCACATGTAGTATTCAAAATAATTTCAAGTAATTTACATT
* *
15940489 ATGTAAACAGAAGCAAACAAGTATTTGCCTTTGTATATTTATTGTATCAACAACATATTTATTTT
66 ATGTAAACAAAAGCAAACAAGTATTTGCCTTTGTATATTTATTGTATCAACAACATATTTACTTT
* * ** *
15940554 TTATATTTATTTTATTAGTAAAAAAGTTAAACAAGC
131 GTATATTTATTTTATCAACAAAAAAGCTAAACAAGC
** * * *
15940590 AATTTACTTATGTATTGCATTTGCTTTGCATGTTA-TATTCAAAGTAATTTCAAGTAGTTTATAT
1 AATTTACTTATGTATTGCATTTGCTTCACATG-TAGTATTCAAAATAATTTCAAGTAATTTACAT
** * * * * *
15940654 TATGTAAA-AAAATTATACAAGTATTTGCCTTTGTGTATTTATTTTATCAACGACATATTTGCTT
65 TATGTAAACAAAAGCAAACAAGTATTTGCCTTTGTATATTTATTGTATCAACAACATATTTACTT
* * *
15940718 TGTATATTTATTTTATCAACATAAGAGCTAAACAAGT
130 TGTATATTTATTTTATCAACAAAAAAGCTAAACAAGC
15940755 AATTTACTTATG
1 AATTTACTTATG
15940767 GTCATTTGAT
Statistics
Matches: 151, Mismatches: 25, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
165 88 0.58
166 61 0.40
167 2 0.01
ACGTcount: A:0.35, C:0.10, G:0.11, T:0.44
Consensus pattern (166 bp):
AATTTACTTATGTATTGCATTTGCTTCACATGTAGTATTCAAAATAATTTCAAGTAATTTACATT
ATGTAAACAAAAGCAAACAAGTATTTGCCTTTGTATATTTATTGTATCAACAACATATTTACTTT
GTATATTTATTTTATCAACAAAAAAGCTAAACAAGC
Found at i:15942306 original size:28 final size:28
Alignment explanation
Indices: 15942274--15942350 Score: 91
Period size: 28 Copynumber: 2.8 Consensus size: 28
15942264 CTTACTCATC
15942274 TGATGTTATCATTTTGTTAAACAGCTAT
1 TGATGTTATCATTTTGTTAAACAGCTAT
* * * *
15942302 TGATGTTTTTATTTTGTTAAACAGTTGT
1 TGATGTTATCATTTTGTTAAACAGCTAT
* * *
15942330 TGATGTTCTGATTTCGTTAAA
1 TGATGTTATCATTTTGTTAAA
15942351 AGAAGACTCT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.25, C:0.08, G:0.17, T:0.51
Consensus pattern (28 bp):
TGATGTTATCATTTTGTTAAACAGCTAT
Found at i:15943226 original size:23 final size:22
Alignment explanation
Indices: 15943198--15943260 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 22
15943188 TATCTCACAA
15943198 ACCCATATACCTAGCCTCCTAT
1 ACCCATATACCTAGCCTCCTAT
* *
15943220 ACGCCATAT-GCTCAACCTCCTAT
1 AC-CCATATACCT-AGCCTCCTAT
*
15943243 ACCCTATATACCCAGCCT
1 ACCC-ATATACCTAGCCT
15943261 TCTCAATCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
22 6 0.19
23 25 0.78
24 1 0.03
ACGTcount: A:0.27, C:0.41, G:0.06, T:0.25
Consensus pattern (22 bp):
ACCCATATACCTAGCCTCCTAT
Found at i:15951916 original size:21 final size:21
Alignment explanation
Indices: 15951901--15951943 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
15951891 CTCCATCCGC
15951901 TGGCGCATGGCCTCCATGCCA
1 TGGCGCATGGCCTCCATGCCA
15951922 TGGCGCATGGCCTCCATGCCA
1 TGGCGCATGGCCTCCATGCCA
15951943 T
1 T
15951944 CTCGCAAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.14, C:0.37, G:0.28, T:0.21
Consensus pattern (21 bp):
TGGCGCATGGCCTCCATGCCA
Found at i:15951949 original size:21 final size:21
Alignment explanation
Indices: 15951903--15951949 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
15951893 CCATCCGCTG
*
15951903 GCGCATGGCCTCCATGCCATG
1 GCGCATGGCCTCCATGCCATC
15951924 GCGCATGGCCTCCATGCCATC
1 GCGCATGGCCTCCATGCCATC
*
15951945 TCGCA
1 GCGCA
15951950 AAGTCAGAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.15, C:0.40, G:0.26, T:0.19
Consensus pattern (21 bp):
GCGCATGGCCTCCATGCCATC
Found at i:15953356 original size:16 final size:16
Alignment explanation
Indices: 15953335--15953367 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
15953325 ATTATTTTTT
15953335 ATAAATTAT-AAAATTA
1 ATAAATT-TCAAAATTA
15953351 ATAAATTTCAAAATTA
1 ATAAATTTCAAAATTA
15953367 A
1 A
15953368 GATTTATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 1 0.06
16 15 0.94
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (16 bp):
ATAAATTTCAAAATTA
Found at i:15953453 original size:27 final size:25
Alignment explanation
Indices: 15953401--15953465 Score: 62
Period size: 26 Copynumber: 2.6 Consensus size: 25
15953391 AATTTTCGAG
* * *
15953401 ATATATTTTTTGAAATTTAAATTCA
1 ATATATTTTTTAAAATATAAAATCA
15953426 ATATAATTTTTTAAAATATAAAGATCA
1 ATAT-ATTTTTTAAAATATAAA-ATCA
15953453 A-A-ATTTGTTTAAA
1 ATATATTT-TTTAAA
15953466 TAAATCAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
24 4 0.12
25 10 0.29
26 16 0.47
27 4 0.12
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (25 bp):
ATATATTTTTTAAAATATAAAATCA
Found at i:15953684 original size:22 final size:21
Alignment explanation
Indices: 15953645--15953685 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
15953635 GCGTTTCACG
*
15953645 TATAATTTTTTATTATAATTT
1 TATAATTTTTGATTATAATTT
15953666 TATAATTATTTGATTATAAT
1 TATAATT-TTTGATTATAAT
15953686 AAAAAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (21 bp):
TATAATTTTTGATTATAATTT
Found at i:15953771 original size:20 final size:20
Alignment explanation
Indices: 15953734--15953778 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
15953724 TTCCATTAAA
**
15953734 AATTTTAATTATGTTAT-AT
1 AATTTTAATTATAATATAAT
15953753 AATTTTAAATTATAATATAAT
1 AATTTT-AATTATAATATAAT
15953774 AATTT
1 AATTT
15953779 CCAGTTATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 6 0.27
20 9 0.41
21 7 0.32
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (20 bp):
AATTTTAATTATAATATAAT
Found at i:15954202 original size:22 final size:23
Alignment explanation
Indices: 15954177--15954232 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 23
15954167 CTTTTTTTTA
15954177 AAATTTTTAATTAAAATT-AAAT
1 AAATTTTTAATTAAAATTAAAAT
* *
15954199 AAATTATTT-ATTTACATTAAAAT
1 AAATT-TTTAATTAAAATTAAAAT
15954222 AATATTTTTAA
1 AA-ATTTTTAA
15954233 ATTTAATAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
22 12 0.43
23 12 0.43
24 4 0.14
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (23 bp):
AAATTTTTAATTAAAATTAAAAT
Found at i:15954884 original size:14 final size:14
Alignment explanation
Indices: 15954852--15954881 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
15954842 TGTAATTGAT
15954852 TAATTATAATATAA
1 TAATTATAATATAA
15954866 TAATTATAA-ATAA
1 TAATTATAATATAA
15954879 TAA
1 TAA
15954882 ATTTTCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
TAATTATAATATAA
Found at i:15955965 original size:15 final size:15
Alignment explanation
Indices: 15955945--15955983 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
15955935 ATTTTTCTAT
15955945 TTTAATTTTAATGAA
1 TTTAATTTTAATGAA
15955960 TTTAATTTTAATGAA
1 TTTAATTTTAATGAA
15955975 TTTAATTTT
1 TTTAATTTT
15955984 TAGTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (15 bp):
TTTAATTTTAATGAA
Found at i:15957691 original size:16 final size:16
Alignment explanation
Indices: 15957667--15957702 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
15957657 AACATTGTTT
*
15957667 TTAATAAATTACAAAA
1 TTAAAAAATTACAAAA
*
15957683 TTAAAAAATTTCAAAA
1 TTAAAAAATTACAAAA
15957699 TTAA
1 TTAA
15957703 GATTAACAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (16 bp):
TTAAAAAATTACAAAA
Found at i:15958013 original size:22 final size:22
Alignment explanation
Indices: 15957985--15958026 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
15957975 GCGTTTCACG
* *
15957985 TATAATTTTTTTATTATAATTT
1 TATAATTATTTGATTATAATTT
15958007 TATAATTATTTGATTATAAT
1 TATAATTATTTGATTATAAT
15958027 AAAAAATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (22 bp):
TATAATTATTTGATTATAATTT
Found at i:15958560 original size:19 final size:20
Alignment explanation
Indices: 15958520--15958571 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
15958510 TAATTTTTAA
*
15958520 TTAAAATTAAATATATTATT
1 TTAAAATTAAATATAATATT
15958540 TTAAAATTAAA-ATAATATT
1 TTAAAATTAAATATAATATT
* *
15958559 TTTAAATTTAATA
1 TTAAAATTAAATA
15958572 AGTTTGATTC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 16 0.57
20 12 0.43
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
TTAAAATTAAATATAATATT
Found at i:15959197 original size:14 final size:14
Alignment explanation
Indices: 15959188--15959218 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
15959178 TGTAATTGAT
15959188 TAATTATAATATAA
1 TAATTATAATATAA
*
15959202 TAATTATAAAATAA
1 TAATTATAATATAA
15959216 TAA
1 TAA
15959219 ATTTTCATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
TAATTATAATATAA
Found at i:15960485 original size:14 final size:14
Alignment explanation
Indices: 15960456--15960498 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
15960446 ATGATTAATT
*
15960456 TGAATTAAGTTTAAA
1 TGAATTTAG-TTAAA
15960471 TGAATTTAGTTAAA
1 TGAATTTAGTTAAA
* *
15960485 TAAATTTAATTAAA
1 TGAATTTAGTTAAA
15960499 ATGTTTAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
14 17 0.68
15 8 0.32
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42
Consensus pattern (14 bp):
TGAATTTAGTTAAA
Found at i:15962761 original size:439 final size:437
Alignment explanation
Indices: 15961647--15962907 Score: 1825
Period size: 439 Copynumber: 2.9 Consensus size: 437
15961637 CTTCCTCATG
* * * ** * * * *
15961647 TAACCAAGCTTTGCAAATGGATCCGAACCTTGAAGAACAGCATAATTCCATGATGATCAGAAGGA
1 TAACCAAGCTTTGCAAATGGATCAGAACCTTGGAGGACAGGGTAATCCCGTGATGATCAGTAGTA
* * * *
15961712 GTTTGCTACAAAATGCTTGCTTAGATGCCCAGGATGAATTTGTAACAGGCGGTAAGTGGTAAAAT
66 GTTTGCTGCAAAATGCTGGCTTAGATTCCC-GGATGAATTTCT-ACAGGCGGTAAGTGGTAAAAT
* * ** *
15961777 TGTTTCCCCTAATCATTTTAGGGTTTGGTAAGCTAGGCAGTGAAAAGAAAAACATTTTCCATTAA
129 TGTTTCCCCTAATCTTTTTAGTGTTTGGTAAGCTAGAAAGTGAAAAGAAAAACATTTTCCATAAA
* * *
15961842 CTAAATACATAATAAATGTTTTGGTTAAGAAGATCTAAAAATATTCATATGTTAGGGATATCCAT
194 ATAAATACATAATAAATGTTTTGGTTAAGAAGATCTAAAAATATTCATTTGTTAGGGATACCCAT
* * * * *
15961907 GGAGAATTTCAAGGACAAGGCTAGTATTCAGATTCTTTCTCTGTTAAATTCTAAAGTTTAGAAGG
259 CGAGAATTTCAAGGACAAGGCCAGTATTCAGATTCTTTCTTTGTTAAATTCTAAAATTTAGTAGG
* * *
15961972 TTTCATTGCTTTGAAACAGTTCTGATTGATGGGAAA-ATCTTGTCTCTCATCCTTTTTCTTCTAA
324 TTTCATTGCTTTGATACAGTTCTGATTGATGGGAAACTTCTTGTCTCTCATCCTTTTTCTTCCAA
** *
15962036 TATTTCAATTTATATTATATCTAACCTCTCTTTGGCTTCATTGCTCAGG
389 TATCACAATTTATATTATATCTAACCTCTCTTTGGCTTCATTGCTCAGA
* * *
15962085 TAACCAAGCTTTGCAAATGGATGAGAACCTTGGAGGACA-GGAAATTTCCAG-GATGATCAGTAG
1 TAACCAAGCTTTGCAAATGGATCAGAACCTTGGAGGACAGGGTAA--TCCCGTGATGATCAGTAG
* * * * * * * *
15962148 TAGTTCGCCGCAAAATGCTGTCTGAGGATTCCCGGGA-GGACTTC-AAACGCGGTAAGTGGTAAA
64 TAGTTTGCTGCAAAATGCTGGCTTA-GATTCCC-GGATGAATTTCTACAGGCGGTAAGTGGTAAA
15962211 ATTGTTTCCCCTAATCTTTTTAGTGTTTGGTAAGCTAGAAAGTGAAAAGAAAAACATTTTCCATA
127 ATTGTTTCCCCTAATCTTTTTAGTGTTTGGTAAGCTAGAAAGTGAAAAGAAAAACATTTTCCATA
*
15962276 AAATAAATTCATAATAAATGTTTTGGTTAAGAAGATCTAAAAATATTCATTTGTTAGGGATACCC
192 AAATAAATACATAATAAATGTTTTGGTTAAGAAGATCTAAAAATATTCATTTGTTAGGGATACCC
* *
15962341 ATCGAGAATTTCAAGGTA-GAGGCCGGTATTCAGATTCTTTCTTTGTTAAATTCTAAAATTTAGT
257 ATCGAGAATTTCAAGG-ACAAGGCCAGTATTCAGATTCTTTCTTTGTTAAATTCTAAAATTTAGT
*
15962405 AGGTTTCATTGCTTTGATACAGTTCTGATTGGTGGGAAACTTCTTGTCTCTCATCCTTTTTCTTC
321 AGGTTTCATTGCTTTGATACAGTTCTGATTGATGGGAAACTTCTTGTCTCTCATCCTTTTTCTTC
* *
15962470 CAATATCACAATTTATATTGTATCTAATCTCTCTTTGGCTTCATTGCTCAGA
386 CAATATCACAATTTATATTATATCTAACCTCTCTTTGGCTTCATTGCTCAGA
* **
15962522 TAACCAAGCTTTGCAAATGGATCAGAACCTTGGAGGACAGGGTAATCCCGTGACGATTGGTAGTA
1 TAACCAAGCTTTGCAAATGGATCAGAACCTTGGAGGACAGGGTAATCCCGTGATGATCAGTAGTA
* *
15962587 GTTTTCTGCAAATTGCTGGCTTAGATTTCTCC-GATGAATTTCCTACAGGCGGTAAGTGGTAAAA
66 GTTTGCTGCAAAATGCTGGCTTAGA-TTC-CCGGATGAATTT-CTACAGGCGGTAAGTGGTAAAA
*
15962651 TTGTTTCCCCCAATCTTTTTAGTGTTTGGTAAGCTAGAAAGTGAAAAGAAAAACATTTTCCATAA
128 TTGTTTCCCCTAATCTTTTTAGTGTTTGGTAAGCTAGAAAGTGAAAAGAAAAACATTTTCCATAA
*
15962716 AATAAATACATAATAAATGTTTTGGTTAAGAAGATCTAAAAATATTCATTTATTAGGGATACCCA
193 AATAAATACATAATAAATGTTTTGGTTAAGAAGATCTAAAAATATTCATTTGTTAGGGATACCCA
* *
15962781 TTGAGAATTTCAAGGACAAGGCCAGTATTCAGATTCTTTCTTTATTAAATTCTAAAATTTAGTAG
258 TCGAGAATTTCAAGGACAAGGCCAGTATTCAGATTCTTTCTTTGTTAAATTCTAAAATTTAGTAG
* ** *
15962846 GTTTCATTACTTTGATACAGTTCTGATTGATTTGAAACTTCTTCTCTCTCATCCTTTTTCTT
323 GTTTCATTGCTTTGATACAGTTCTGATTGATGGGAAACTTCTTGTCTCTCATCCTTTTTCTT
15962908 GCAGGTCCAA
Statistics
Matches: 732, Mismatches: 78, Indels: 25
0.88 0.09 0.03
Matches are distributed among these distances:
436 238 0.33
437 146 0.20
438 76 0.10
439 272 0.37
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (437 bp):
TAACCAAGCTTTGCAAATGGATCAGAACCTTGGAGGACAGGGTAATCCCGTGATGATCAGTAGTA
GTTTGCTGCAAAATGCTGGCTTAGATTCCCGGATGAATTTCTACAGGCGGTAAGTGGTAAAATTG
TTTCCCCTAATCTTTTTAGTGTTTGGTAAGCTAGAAAGTGAAAAGAAAAACATTTTCCATAAAAT
AAATACATAATAAATGTTTTGGTTAAGAAGATCTAAAAATATTCATTTGTTAGGGATACCCATCG
AGAATTTCAAGGACAAGGCCAGTATTCAGATTCTTTCTTTGTTAAATTCTAAAATTTAGTAGGTT
TCATTGCTTTGATACAGTTCTGATTGATGGGAAACTTCTTGTCTCTCATCCTTTTTCTTCCAATA
TCACAATTTATATTATATCTAACCTCTCTTTGGCTTCATTGCTCAGA
Found at i:15963169 original size:30 final size:30
Alignment explanation
Indices: 15963104--15963171 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
15963094 TTATTACAGT
* *
15963104 CAATTGAACCCTCAAACATTTATTTCTATC
1 CAATTGAGCCCTCAAACATATATTTCTATC
* *
15963134 TAATTGAGCCCTTAAACATATATTT-TCATC
1 CAATTGAGCCCTCAAACATATATTTCT-ATC
15963164 CAATTGAG
1 CAATTGAG
15963172 TCTTTGATAG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 1 0.03
30 31 0.97
ACGTcount: A:0.34, C:0.22, G:0.07, T:0.37
Consensus pattern (30 bp):
CAATTGAGCCCTCAAACATATATTTCTATC
Found at i:15967255 original size:12 final size:11
Alignment explanation
Indices: 15967222--15967264 Score: 54
Period size: 10 Copynumber: 4.0 Consensus size: 11
15967212 TTTAATTTAG
*
15967222 TATAAATATATT
1 TATAAAT-TATA
15967234 TATAAA-TATA
1 TATAAATTATA
15967244 TATAAATT-TA
1 TATAAATTATA
15967254 TATAAATTATA
1 TATAAATTATA
15967265 ATATTATTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
10 19 0.68
11 3 0.11
12 6 0.21
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
TATAAATTATA
Found at i:15970331 original size:47 final size:47
Alignment explanation
Indices: 15970277--15970409 Score: 185
Period size: 47 Copynumber: 2.8 Consensus size: 47
15970267 AACAACCAAT
* * * *
15970277 TCCAAATGGTCCATTATAGGGAACAAAATATTCATATTGCATTGTTA
1 TCCAAATGGTCCATTATAGGGAACAAAATGTTCACATTACATTGCTA
* *
15970324 TCCAAATGGTCTATTATAGGGAACAAAATGTACACATTACATTGCTA
1 TCCAAATGGTCCATTATAGGGAACAAAATGTTCACATTACATTGCTA
* * *
15970371 TTCAAATGGTCCATTACAAGGAACAAAATGTTCACATTA
1 TCCAAATGGTCCATTATAGGGAACAAAATGTTCACATTA
15970410 TAGAAATGGT
Statistics
Matches: 75, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 75 1.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (47 bp):
TCCAAATGGTCCATTATAGGGAACAAAATGTTCACATTACATTGCTA
Found at i:15976062 original size:217 final size:213
Alignment explanation
Indices: 15975686--15976325 Score: 765
Period size: 212 Copynumber: 3.0 Consensus size: 213
15975676 ACGCTATAAT
* * * *
15975686 TTTGTCACCAATTTAAAATTTCATCTGTGATAAATTTTTTATGATGGATTTTAGGTGACATTATT
1 TTTGTCACTAATTTAAAATTTTATCTGTGATAAATTTTTTA--ATAGATTTTAGGTGATATTATT
* * *
15975751 AATTTTTATCACAAATTGAATACTTTAGTTAACTATTAATGACATTGCAATTTCAAT-A-TATTA
64 AATTTTTGTCACAAATTGAATACTTTAGTTAACTATTAATGACATTACAATTTC-GTCACT-TTA
* * * *
15975814 ATGTATGGTGTTATATGATGATAATATAAATGTCACAAACTTTTACCACCAAATTTATTTGGTAA
127 ATTTATGGTATTATATGATGATAATATAAATGTCACAAACTTTTACCATCAAATTTATTTGGT-G
*
15975879 AAAAATTTTTTGTGACATTTAAA
191 AAAAATTTTTTATGACATTTAAA
* *
15975902 TGTTGTCACTAATTTAAAATTTTATCTGTGATAAAATTTTTTAATAGATTTTAGATGATATTATC
1 T-TTGTCACTAATTTAAAATTTTATCTGTGAT-AAATTTTTTAATAGATTTTAGGTGATATTATT
* * *
15975967 AATTTTTGCCATAAA-TGTAACACTTTAGTTAACTATTAATGACATTACAATTTCGTCACCTTTA
64 AATTTTTGTCACAAATTG-AATACTTTAGTTAACTATTAATGACATTACAATTTCGTCA-CTTTA
* * ***
15976031 TTTTATGGTATTATATGATGATAACATAAATGTCACAAACTTTTATTGTC-AATTT-TTT-GTG-
127 ATTTATGGTATTATATGATGATAATATAAATGTCACAAACTTTTACCATCAAATTTATTTGGTGA
*** * *
15976092 ACTTTTTTTTATTTTA-AGTTAAA
192 AAAATTTTTTA--TGACATTTAAA
* * * * * *
15976115 TATGTCACTAATTTAAAATTTTATCTATGACGAATTTTTTTTATAGATTTTAGGTGATGTTATTA
1 TTTGTCACTAATTTAAAATTTTATCTGTGA-TAAATTTTTTAATAGATTTTAGGTGATATTATTA
* * *
15976180 ATTTTTGTCACAAATTGAATACTTTAGTTAACTATTAATAACATTACAATTTCGTCACGTCAATT
65 ATTTTTGTCACAAATTGAATACTTTAGTTAACTATTAATGACATTACAATTTCGTCACTTTAATT
* * *
15976245 TATGGTATTATATGATGACAATATAAATGTCATAAACTTTTACCATCAAATTTATTTGATGAAAA
130 TATGGTATTATATGATGATAATATAAATGTCACAAACTTTTACCATCAAATTTATTTGGTGAAAA
15976310 ATTTTTTATGACATTT
195 ATTTTTTATGACATTT
15976326 TTTTATCTTA
Statistics
Matches: 355, Mismatches: 54, Indels: 32
0.80 0.12 0.07
Matches are distributed among these distances:
211 46 0.13
212 117 0.33
213 14 0.04
214 9 0.03
215 14 0.04
216 71 0.20
217 73 0.21
218 11 0.03
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45
Consensus pattern (213 bp):
TTTGTCACTAATTTAAAATTTTATCTGTGATAAATTTTTTAATAGATTTTAGGTGATATTATTAA
TTTTTGTCACAAATTGAATACTTTAGTTAACTATTAATGACATTACAATTTCGTCACTTTAATTT
ATGGTATTATATGATGATAATATAAATGTCACAAACTTTTACCATCAAATTTATTTGGTGAAAAA
TTTTTTATGACATTTAAA
Found at i:15976565 original size:236 final size:235
Alignment explanation
Indices: 15976117--15976615 Score: 617
Period size: 235 Copynumber: 2.1 Consensus size: 235
15976107 AAGTTAAATA
* * * * * * *
15976117 TGTCACTAATTTAAAATTTTATCTATGACGAATTTTTTTTATAGATTTTAGGTGATGTTATTAAT
1 TGTCACTAATTTAAAATTTTATCTATGACAAAATTTTCTGATAGATTTTAGATAATATTATTAAT
* * *
15976182 TTTTGTCACAAATTGAATACTTTAGTTAACTATTAATAACATTACAATTTCGTCACGTCAATTTA
66 TTTTGTCACAAATTAAACACTTTAGTTAACTATTAATAACATTACAATTTCGTCACATCAATTTA
* * ** *
15976247 TGGTATTATATGATGACAATATAAATGTCATAAACTTTTACCATCAAATTTATTTGATGAAAAAT
131 TGATATTATATAACAACAACATAAATGTCATAAACTTTTACCATCAAATTTATTTGATGAAAAAT
* ** *
15976312 TTTTTATGACATTTTTTTATCTTATGTGATGTTATAATTT
196 TTTTTATGACATTTTTTTATCTTAGGCAACGTTATAATTT
* * *
15976352 TGTCACTAATTTAAATTTTTATTTATGACAAAATTTTCTGATAGGTTTTAGATAATATTATTAAT
1 TGTCACTAATTTAAAATTTTATCTATGACAAAATTTTCTGATAGATTTTAGATAATATTATTAAT
* * * * * *
15976417 TTTTGTCATAAATTAAACACTTTAGTTAATTATTAATGACATTATAATTTTGTCACATTAATGTT
66 TTTTGTCACAAATTAAACACTTTAGTTAACTATTAATAACATTACAATTTCGTCACATCAAT-TT
* * * * *
15976482 -TGATGTTATATAACAATAACATAAAATGTCATAAACTTTTA-TAGTCAATTTTATTTGGT-AGA
130 ATGATATTATATAACAACAACAT-AAATGTCATAAACTTTTACCA-TCAAATTTATTTGATGA-A
*
15976544 AAATTTTTTATGACATTTTTTTATTTTAGGCAACGTTATAATTT
192 AAATTTTTTATGACATTTTTTTATCTTAGGCAACGTTATAATTT
**
15976588 TGTCACCCATTTAAAATTTTATCTATGA
1 TGTCACTAATTTAAAATTTTATCTATGA
15976616 TGAATTTTTT
Statistics
Matches: 222, Mismatches: 38, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
235 125 0.56
236 97 0.44
ACGTcount: A:0.34, C:0.09, G:0.10, T:0.47
Consensus pattern (235 bp):
TGTCACTAATTTAAAATTTTATCTATGACAAAATTTTCTGATAGATTTTAGATAATATTATTAAT
TTTTGTCACAAATTAAACACTTTAGTTAACTATTAATAACATTACAATTTCGTCACATCAATTTA
TGATATTATATAACAACAACATAAATGTCATAAACTTTTACCATCAAATTTATTTGATGAAAAAT
TTTTTATGACATTTTTTTATCTTAGGCAACGTTATAATTT
Found at i:15981221 original size:204 final size:199
Alignment explanation
Indices: 15980803--15981403 Score: 650
Period size: 204 Copynumber: 3.0 Consensus size: 199
15980793 TTAATAACGT
* * * * * *
15980803 TAATTATGTCACCAATACTGTAATAATTTATTTTTCATCACTAATATATTAGATTTAATCATTTA
1 TAATTATGTCACCAATACTATGATAATTTATCTTTCGTCACTAATATATCAGATTTTATCATTTA
* * * * *
15980868 TTTTGTGACAATTATAGCCTTTAATGAC-ATTTTTGATAAATAGCTAACAAAAACTAATGTCACA
66 TTTTGTGACAATTATAGCCTTTAATGACGTTTTTTTATAAATAGCTGACGAAAACTAATGTCAAA
* * * * * * *
15980932 AAAATAAGCATAATGTGATGTTTAATTTTATTGTTACGTTTGACATTATCTTATAACCATTTGTG
131 AAAAAAAGCATAAAGTGACGTTTGATTTTATTGTCACGTTTGACATTATCTTATAATCATTCGTG
**
15980997 ATGA
196 ACAA
* * * * * * *
15981001 TAATTTTATTACCAATACTATGACAATTTATCTTTCGTAATTAATAGATCAGATTTTATCATTTA
1 TAATTATGTCACCAATACTATGATAATTTATCTTTCGTCACTAATATATCAGATTTTATCATTTA
* * * * *
15981066 TTTTGTGACAATTATAACCTTCAATAACGTTTTTTCTTTATAAATAGTTGACGAAAATTAATGTC
66 TTTTGTGACAATTATAGCCTTTAATGACG--TTTT-TTTATAAATAGCTGACGAAAACTAATGTC
* * *
15981131 ATATAAAAAAAAGTATAAGGTAACGTTTGATTTTATTGTCACGTTTGACATTATCTTATAATCAT
128 A-A-AAAAAAAAGCATAAAGTGACGTTTGATTTTATTGTCACGTTTGACATTATCTTATAATCAT
15981196 TCGTGACAA
191 TCGTGACAA
* * * *
15981205 TAATTGTGTCACCAATATTATGATGATTTACCTATT-GTCACTAATATATCAGATTTTATCATTT
1 TAATTATGTCACCAATACTATGATAATTTATCT-TTCGTCACTAATATATCAGATTTTATCATTT
** * * *
15981269 ATTTTGTGATGATCATAGCTTTTAATGACGTTTTGTTTATAAATAGCTGACGAAAACTAACGTCA
65 ATTTTGTGACAATTATAGCCTTTAATGACGTTTT-TTTATAAATAGCTGACGAAAACTAATGTCA
* * * *
15981334 CAAAAATTAATGCATAAAGTGACGTTTGATTTTATTGTCACAG-TAGACATTATCTTACAATCAT
129 -AAAAA-AAAAGCATAAAGTGACGTTTGATTTTATTGTCAC-GTTTGACATTATCTTATAATCAT
*
15981398 TGGTGA
191 TCGTGA
15981404 TGATAATTTT
Statistics
Matches: 330, Mismatches: 64, Indels: 14
0.81 0.16 0.03
Matches are distributed among these distances:
198 77 0.23
201 7 0.02
202 110 0.33
203 1 0.00
204 133 0.40
205 2 0.01
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.41
Consensus pattern (199 bp):
TAATTATGTCACCAATACTATGATAATTTATCTTTCGTCACTAATATATCAGATTTTATCATTTA
TTTTGTGACAATTATAGCCTTTAATGACGTTTTTTTATAAATAGCTGACGAAAACTAATGTCAAA
AAAAAAAGCATAAAGTGACGTTTGATTTTATTGTCACGTTTGACATTATCTTATAATCATTCGTG
ACAA
Found at i:15981398 original size:202 final size:199
Alignment explanation
Indices: 15980835--15981463 Score: 708
Period size: 202 Copynumber: 3.1 Consensus size: 199
15980825 ATAATTTATT
* * * *
15980835 TTTCATCACTAATATATTAGATTTAATCATTTATTTTGTGACAATTATAGCCTTTAATGAC-ATT
1 TTTCGTCACTAATATATCAGATTTTATCATTTATTTTGTGACAATTATAGCCTTTAATGACGTTT
* * * * * *
15980899 TTTGATAAATAGCTAACAAAAACTAATGTCACAAAAATAAGCATAATGTGATGTTTAATTTTATT
66 TTTTATAAATAGCTGACGAAAACTAATGTCACAAAAATAAGCATAAAGTGACGTTTGATTTTATT
* * * * * *
15980964 GTTACGTTTGACATTATCTTATAACCATTTGTGATGATAATTTTATTACCAATACTATGACAATT
131 GTCACGTTTGACATTATCTTATAATCATTCGTGATGATAATTTTGTTACCAATATTATGACGATT
*
15981029 TATC
196 TACC
* * * * * *
15981033 TTTCGTAATTAATAGATCAGATTTTATCATTTATTTTGTGACAATTATAACCTTCAATAACGTTT
1 TTTCGTCACTAATATATCAGATTTTATCATTTATTTTGTGACAATTATAGCCTTTAATGACG--T
* * * * * * *
15981098 TTTCTTTATAAATAGTTGACGAAAATTAATGTCATATAAAAAAAAGTATAAGGTAACGTTTGATT
64 TTT-TTTATAAATAGCTGACGAAAACTAATGTC--ACAAAAATAAGCATAAAGTGACGTTTGATT
** * *
15981163 TTATTGTCACGTTTGACATTATCTTATAATCATTCGTGACAATAATTGTGTCACCAATATTATGA
126 TTATTGTCACGTTTGACATTATCTTATAATCATTCGTGATGATAATTTTGTTACCAATATTATGA
*
15981228 TGATTTACC
191 CGATTTACC
** * *
15981237 TATT-GTCACTAATATATCAGATTTTATCATTTATTTTGTGATGATCATAGCTTTTAATGACGTT
1 T-TTCGTCACTAATATATCAGATTTTATCATTTATTTTGTGACAATTATAGCCTTTAATGACGTT
*
15981301 TTGTTTATAAATAGCTGACGAAAACTAACGTCACAAAAATTAATGCATAAAGTGACGTTTGATTT
65 TT-TTTATAAATAGCTGACGAAAACTAATGTCACAAAAA-TAA-GCATAAAGTGACGTTTGATTT
* * * ** *
15981366 TATTGTCACAG-TAGACATTATCTTACAATCATTGGTGATGATAATTTTGTTATTAATATTGTGA
127 TATTGTCAC-GTTTGACATTATCTTATAATCATTCGTGATGATAATTTTGTTACCAATATTATGA
15981430 CGATTTACC
191 CGATTTACC
*
15981439 TTTCATCACTAATATAGT-AGATTTT
1 TTTCGTCACTAATATA-TCAGATTTT
15981464 TTTGTGACGA
Statistics
Matches: 354, Mismatches: 65, Indels: 20
0.81 0.15 0.05
Matches are distributed among these distances:
198 52 0.15
200 6 0.02
201 7 0.02
202 151 0.43
203 2 0.01
204 134 0.38
205 2 0.01
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42
Consensus pattern (199 bp):
TTTCGTCACTAATATATCAGATTTTATCATTTATTTTGTGACAATTATAGCCTTTAATGACGTTT
TTTTATAAATAGCTGACGAAAACTAATGTCACAAAAATAAGCATAAAGTGACGTTTGATTTTATT
GTCACGTTTGACATTATCTTATAATCATTCGTGATGATAATTTTGTTACCAATATTATGACGATT
TACC
Found at i:15981837 original size:17 final size:18
Alignment explanation
Indices: 15981799--15981837 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
15981789 TCAAAAGGGG
*
15981799 TTTCTTTAGTTTTTGCAA
1 TTTCTTTAGTTTTTCCAA
*
15981817 TTTCTTTA-TTTTTCCAT
1 TTTCTTTAGTTTTTCCAA
15981834 TTTC
1 TTTC
15981838 AAATGTTACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.13, C:0.15, G:0.05, T:0.67
Consensus pattern (18 bp):
TTTCTTTAGTTTTTCCAA
Found at i:15982461 original size:20 final size:19
Alignment explanation
Indices: 15982411--15982461 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 19
15982401 ACATCAATAT
15982411 AAAATGAAAAATTCAAAAAA
1 AAAAT-AAAAATTCAAAAAA
* *
15982431 AAATTTCAAAATTCAAAAGAA
1 AAA-ATAAAAATTCAAAA-AA
15982452 AAAATAAAAA
1 AAAATAAAAA
15982462 ATAAAATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 19 0.76
21 6 0.24
ACGTcount: A:0.73, C:0.06, G:0.04, T:0.18
Consensus pattern (19 bp):
AAAATAAAAATTCAAAAAA
Found at i:15982486 original size:9 final size:9
Alignment explanation
Indices: 15982472--15982547 Score: 53
Period size: 9 Copynumber: 7.8 Consensus size: 9
15982462 ATAAAATTTT
15982472 TTTAAAAAA
1 TTTAAAAAA
15982481 TTTAAAAAA
1 TTTAAAAAA
*
15982490 GTGTAAATAAA
1 -TTTAAA-AAA
15982501 TTATAAAAAAA
1 TT-T-AAAAAA
* *
15982512 TTTTAATAAC
1 -TTTAAAAAA
* *
15982522 TCTAAAATA
1 TTTAAAAAA
15982531 TTTAAAAAA
1 TTTAAAAAA
15982540 TTCTAAAA
1 TT-TAAAA
15982548 TTTTTTTAAA
Statistics
Matches: 51, Mismatches: 10, Indels: 11
0.71 0.14 0.15
Matches are distributed among these distances:
9 23 0.45
10 15 0.29
11 8 0.16
12 5 0.10
ACGTcount: A:0.59, C:0.04, G:0.03, T:0.34
Consensus pattern (9 bp):
TTTAAAAAA
Found at i:15982533 original size:19 final size:19
Alignment explanation
Indices: 15982506--15982559 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 19
15982496 ATAAATTATA
* *
15982506 AAAAAATTTTAATAACTCT
1 AAAATATTTTAAAAACTCT
* *
15982525 AAAATATTTAAAAAATTCT
1 AAAATATTTTAAAAACTCT
*
15982544 AAAATTTTTTTAAAAA
1 AAAA-TATTTTAAAAA
15982560 ATAAAATTTT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
19 19 0.68
20 9 0.32
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAATATTTTAAAAACTCT
Found at i:15982583 original size:18 final size:18
Alignment explanation
Indices: 15982507--15982583 Score: 50
Period size: 18 Copynumber: 4.3 Consensus size: 18
15982497 TAAATTATAA
*
15982507 AAAAATTTTAAT-AACTC
1 AAAAATTTTAATAAATTC
* *
15982524 TAAAATATTTAAAAAATTC
1 AAAAAT-TTTAATAAATTC
* ** **
15982543 TAAAATTTTTTTAAA-AA
1 AAAAATTTTAATAAATTC
15982560 ATAAAATTTTAATAAATTC
1 A-AAAATTTTAATAAATTC
15982579 AAAAA
1 AAAAA
15982584 AATTTTCAAA
Statistics
Matches: 43, Mismatches: 13, Indels: 7
0.68 0.21 0.11
Matches are distributed among these distances:
17 5 0.12
18 27 0.63
19 11 0.26
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAAATTTTAATAAATTC
Found at i:15982613 original size:9 final size:9
Alignment explanation
Indices: 15982601--15982631 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
15982591 AAAACACATT
15982601 AAAATTCTA
1 AAAATTCTA
*
15982610 AAAATTTTA
1 AAAATTCTA
15982619 AAAATTCTA
1 AAAATTCTA
15982628 AAAA
1 AAAA
15982632 CTATTAAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.32
Consensus pattern (9 bp):
AAAATTCTA
Found at i:15982640 original size:18 final size:17
Alignment explanation
Indices: 15982598--15982640 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 17
15982588 TTCAAAACAC
15982598 ATTAAAATTCTAAAAAT
1 ATTAAAATTCTAAAAAT
*
15982615 TTTAAAAATTCTAAAAACT
1 ATT-AAAATTCTAAAAA-T
15982634 ATTAAAA
1 ATTAAAA
15982641 GTTTGTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 2 0.09
18 17 0.77
19 3 0.14
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (17 bp):
ATTAAAATTCTAAAAAT
Found at i:15982776 original size:20 final size:20
Alignment explanation
Indices: 15982736--15982780 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
15982726 TTAAATTTCC
*
15982736 TAAAAAATTCAAAACGATTT
1 TAAAAAATTCAAAACAATTT
15982756 TAAAAAATTCAAAA-AATTTT
1 TAAAAAATTCAAAACAA-TTT
15982776 TAAAA
1 TAAAA
15982781 TTTGTAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 1 0.04
20 22 0.96
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.31
Consensus pattern (20 bp):
TAAAAAATTCAAAACAATTT
Found at i:15982857 original size:26 final size:25
Alignment explanation
Indices: 15982792--15982857 Score: 60
Period size: 26 Copynumber: 2.5 Consensus size: 25
15982782 TTGTAAAAAA
* *
15982792 AAAAATGAAATATTTTTAAAAATTAT
1 AAAAATTAAATA-ATTTAAAAATTAT
* * *
15982818 AAAAATTATGATAATTTAAAATTTTT
1 AAAAATTA-AATAATTTAAAAATTAT
15982844 CAAAAATTAAATAA
1 -AAAAATTAAATAA
15982858 CAAATCAAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
26 21 0.66
27 11 0.34
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.38
Consensus pattern (25 bp):
AAAAATTAAATAATTTAAAAATTAT
Found at i:15982974 original size:27 final size:27
Alignment explanation
Indices: 15982944--15983015 Score: 92
Period size: 27 Copynumber: 2.6 Consensus size: 27
15982934 CTTAAAAAAC
15982944 TGAAAATTAAAAAAATATAAAACTTTT-
1 TGAAAATTAAAAAAATATAAAA-TTTTG
* *
15982971 TGAAAATTTATAAAATATAAAATTTTG
1 TGAAAATTAAAAAAATATAAAATTTTG
15982998 TGAAAATATCAAAAAAAT
1 TGAAAAT-T-AAAAAAAT
15983016 TCAAAAAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
26 4 0.11
27 27 0.71
28 1 0.03
29 6 0.16
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.33
Consensus pattern (27 bp):
TGAAAATTAAAAAAATATAAAATTTTG
Found at i:15983019 original size:10 final size:10
Alignment explanation
Indices: 15983000--15983034 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
15982990 AAATTTTGTG
15983000 AAAATATCAAA
1 AAAAT-TCAAA
15983011 AAAATTCAAA
1 AAAATTCAAA
*
15983021 AAAATGCAAA
1 AAAATTCAAA
15983031 AAAA
1 AAAA
15983035 ATTTACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 18 0.78
11 5 0.22
ACGTcount: A:0.74, C:0.09, G:0.03, T:0.14
Consensus pattern (10 bp):
AAAATTCAAA
Found at i:15983062 original size:17 final size:18
Alignment explanation
Indices: 15983030--15983068 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
15983020 AAAAATGCAA
15983030 AAAAAATTTACAAATTT-
1 AAAAAATTTACAAATTTC
15983047 AAAAAATTTA-ATAATTTC
1 AAAAAATTTACA-AATTTC
15983065 AAAA
1 AAAA
15983069 TTTTGGAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 1 0.05
17 15 0.75
18 4 0.20
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (18 bp):
AAAAAATTTACAAATTTC
Found at i:15983223 original size:20 final size:21
Alignment explanation
Indices: 15983200--15983243 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
15983190 TTTGAAAATT
15983200 TTTTACAATTG-TTCAAAA-AA
1 TTTTA-AATTGTTTCAAAAGAA
*
15983220 TTTTATATTGTTTCAAAAGAA
1 TTTTAAATTGTTTCAAAAGAA
15983241 TTT
1 TTT
15983244 AGAGTTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 4 0.19
20 12 0.57
21 5 0.24
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.48
Consensus pattern (21 bp):
TTTTAAATTGTTTCAAAAGAA
Found at i:15983379 original size:18 final size:17
Alignment explanation
Indices: 15983327--15983486 Score: 70
Period size: 21 Copynumber: 8.5 Consensus size: 17
15983317 ATCTTCCATT
15983327 TTTTTTAATTTTTTAAAAA
1 TTTTTTAA-TTTTT-AAAA
** *
15983346 TTTTTGGATTCTTAAAA
1 TTTTTTAATTTTTAAAA
15983363 TTTTTTAATTTTATAAATA
1 TTTTTTAATTTT-TAAA-A
15983382 TTTTTTTGAATTTTTCCAAAA
1 -TTTTTT-AATTTTT--AAAA
*
15983403 TTTTTTTAAGTATTTTATAAT
1 -TTTTTTAA-T-TTTTA-AAA
*** *
15983424 TTTTTTAAAAATT-AAT
1 TTTTTTAATTTTTAAAA
15983440 TTTTTTAAGAACTTTTTAAAA
1 TTTTTT---AA-TTTTTAAAA
* *
15983461 TTTTTAGAATTTTTTAAA
1 TTTTT-TAATTTTTAAAA
15983479 TTTTTTAA
1 TTTTTTAA
15983487 AAATTTCTTT
Statistics
Matches: 109, Mismatches: 17, Indels: 32
0.69 0.11 0.20
Matches are distributed among these distances:
16 9 0.08
17 15 0.14
18 23 0.21
19 11 0.10
20 20 0.18
21 24 0.22
22 7 0.06
ACGTcount: A:0.34, C:0.03, G:0.04, T:0.60
Consensus pattern (17 bp):
TTTTTTAATTTTTAAAA
Found at i:15983464 original size:9 final size:9
Alignment explanation
Indices: 15983441--15983488 Score: 51
Period size: 9 Copynumber: 5.0 Consensus size: 9
15983431 AAAATTAATT
15983441 TTTTTAAGAA
1 TTTTTAA-AA
15983451 CTTTTTAAAA
1 -TTTTTAAAA
*
15983461 TTTTTAGAAT
1 TTTTTA-AAA
*
15983471 TTTTTAAAT
1 TTTTTAAAA
15983480 TTTTTAAAA
1 TTTTTAAAA
15983489 ATTTCTTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
9 17 0.50
10 10 0.29
11 7 0.21
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:15983483 original size:19 final size:19
Alignment explanation
Indices: 15983435--15983485 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
15983425 TTTTTAAAAA
*
15983435 TTAATTTTTTTAAGAACTTT
1 TTAAATTTTTT-AGAACTTT
* *
15983455 TTAAAATTTTTAGAATTTT
1 TTAAATTTTTTAGAACTTT
15983474 TTAAATTTTTTA
1 TTAAATTTTTTA
15983486 AAAATTTCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 18 0.67
20 9 0.33
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (19 bp):
TTAAATTTTTTAGAACTTT
Found at i:15983932 original size:18 final size:18
Alignment explanation
Indices: 15983902--15983941 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
15983892 ATTAATCTTT
15983902 AATAAGTTATTTTTAATA
1 AATAAGTTATTTTTAATA
15983920 AATATAGTT-TTTTTAATA
1 AATA-AGTTATTTTTAATA
15983938 AATA
1 AATA
15983942 CAAATAGTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (18 bp):
AATAAGTTATTTTTAATA
Found at i:15984242 original size:62 final size:60
Alignment explanation
Indices: 15984172--15984340 Score: 200
Period size: 62 Copynumber: 2.8 Consensus size: 60
15984162 TCAATCATAA
* * *
15984172 CAAAATTATTATAATACTTGTCTTATCATAATTACGAAAATACTTCTCAT-ATTATAATTGAT
1 CAAAATTATTATAATAC-TGTATTATCATAATTA-GAAAATACTCCTC-TCATCATAATTGAT
* * *
15984234 TAAAATTATTATAATACTGCTATTATCATAATTATAGAAATACTCCTCTCATCATAATTGGT
1 CAAAATTATTATAATACTG-TATTATCATAATTAGA-AAATACTCCTCTCATCATAATTGAT
*
15984296 CAAAATTATTATAATACT-TATTATTATAATTATGAAAATAC-CCTC
1 CAAAATTATTATAATACTGTATTATCATAATTA-GAAAATACTCCTC
15984341 ATGATTACTT
Statistics
Matches: 94, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
59 4 0.04
60 19 0.20
61 5 0.05
62 66 0.70
ACGTcount: A:0.41, C:0.14, G:0.05, T:0.41
Consensus pattern (60 bp):
CAAAATTATTATAATACTGTATTATCATAATTAGAAAATACTCCTCTCATCATAATTGAT
Found at i:15985056 original size:25 final size:24
Alignment explanation
Indices: 15985010--15985064 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 24
15985000 TTTAATATAA
* *
15985010 TATAAAATTAATTAAATGTTAAAT
1 TATAAAATTAACTAAATATTAAAT
*
15985034 TACTAAAATTAACTATATATTAAAT
1 TA-TAAAATTAACTAAATATTAAAT
15985059 TATAAA
1 TATAAA
15985065 TTTTAGGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 6 0.22
25 21 0.78
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.40
Consensus pattern (24 bp):
TATAAAATTAACTAAATATTAAAT
Found at i:15985824 original size:62 final size:63
Alignment explanation
Indices: 15985715--15985868 Score: 154
Period size: 62 Copynumber: 2.5 Consensus size: 63
15985705 AAATGTCTCA
* *
15985715 TATCATAATT-ATTCAAAATTACTATAAT-GTCTCTCATATCATAATTATAAAAATATCACTCC
1 TATCATAATTGA-TCAAAATTACTATAATATTCTCTCATAACATAATTATAAAAATATCACTCC
* * * **
15985777 TATCATAATTGATCAAAATTACTATAATATTC-CTC-TAACTATGATTATGAAAATGTTTCTCC
1 TATCATAATTGATCAAAATTACTATAATATTCTCTCATAAC-ATAATTATAAAAATATCACTCC
* ** * *
15985839 TATTATAATTGGCCAAAATTATTATTATAT
1 TATCATAATTGATCAAAATTACTATAATAT
15985869 ACTTTATCAT
Statistics
Matches: 77, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
61 3 0.04
62 71 0.92
63 3 0.04
ACGTcount: A:0.40, C:0.15, G:0.05, T:0.41
Consensus pattern (63 bp):
TATCATAATTGATCAAAATTACTATAATATTCTCTCATAACATAATTATAAAAATATCACTCC
Found at i:15987168 original size:18 final size:18
Alignment explanation
Indices: 15987134--15987169 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
15987124 TTATGAAAAT
*
15987134 AAATAAAATTTAATTAAA
1 AAATAAAATTGAATTAAA
*
15987152 AAATAAAATTGATTTAAA
1 AAATAAAATTGAATTAAA
15987170 CAAACAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (18 bp):
AAATAAAATTGAATTAAA
Found at i:16005254 original size:2 final size:2
Alignment explanation
Indices: 16005247--16005272 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
16005237 TTGCATCAAG
16005247 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
16005273 GTATCACAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:16005512 original size:16 final size:15
Alignment explanation
Indices: 16005491--16005524 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
16005481 AGATGTTAAA
*
16005491 TTTTAAATTTTAAATT
1 TTTTAAATATT-AATT
16005507 TTTTAAATATTAATT
1 TTTTAAATATTAATT
16005522 TTT
1 TTT
16005525 AAAAATAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTTAAATATTAATT
Found at i:16006457 original size:29 final size:31
Alignment explanation
Indices: 16006408--16006479 Score: 87
Period size: 29 Copynumber: 2.4 Consensus size: 31
16006398 AAAATATTTT
*
16006408 TATAATAATTAAATATAAAATTT-TT-TTAA
1 TATAATATTTAAATATAAAATTTATTATTAA
16006437 TATAATATTTAAAT-TATAAATTTATTAATTAA
1 TATAATATTTAAATATA-AAATTTATT-ATTAA
*
16006469 CATAATATTTA
1 TATAATATTTA
16006480 TTTATTTATA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
28 2 0.05
29 19 0.51
30 2 0.05
32 14 0.38
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (31 bp):
TATAATATTTAAATATAAAATTTATTATTAA
Found at i:16006808 original size:29 final size:29
Alignment explanation
Indices: 16006765--16006833 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
16006755 TAATCTTTTA
* * * *
16006765 AAATATAATAAAATATTTTATGTGATATTT
1 AAATTTAA-AAAATATTTAATATAATATTT
16006795 AAATTTAAAAAATATTTAATATAATATTT
1 AAATTTAAAAAATATTTAATATAATATTT
16006824 AAATTATAAA
1 AAATT-TAAA
16006834 TTTATTAATT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 23 0.68
30 11 0.32
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (29 bp):
AAATTTAAAAAATATTTAATATAATATTT
Found at i:16006839 original size:29 final size:31
Alignment explanation
Indices: 16006789--16006855 Score: 77
Period size: 29 Copynumber: 2.2 Consensus size: 31
16006779 ATTTTATGTG
16006789 ATATTTAAATTTAAAAAATA-T-TTAATATA
1 ATATTTAAATTTAAAAAATATTATTAATATA
**
16006818 ATATTTAAA-TTATAAATTTATTAATTAATATA
1 ATATTTAAATTTA-AAAAATATT-ATTAATATA
16006850 ATATTT
1 ATATTT
16006856 TGATATCTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 3 0.09
29 14 0.44
30 1 0.03
32 14 0.44
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (31 bp):
ATATTTAAATTTAAAAAATATTATTAATATA
Found at i:16007330 original size:21 final size:21
Alignment explanation
Indices: 16007274--16007327 Score: 71
Period size: 18 Copynumber: 2.8 Consensus size: 21
16007264 TTATCATTTA
*
16007274 AAATTTATCATATTAA-AAAT
1 AAATTTATAATATTAATAAAT
16007294 AAA--TATAATATTAATAAAT
1 AAATTTATAATATTAATAAAT
16007313 AAATTTATAAT-TTAA
1 AAATTTATAATATTAA
16007328 ATATTATATA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
18 10 0.33
19 7 0.23
20 7 0.23
21 6 0.20
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
AAATTTATAATATTAATAAAT
Found at i:16007358 original size:29 final size:31
Alignment explanation
Indices: 16007317--16007391 Score: 102
Period size: 31 Copynumber: 2.5 Consensus size: 31
16007307 ATAAATAAAT
* *
16007317 TTATAATTTAAATATTATA-TAAAT-TTTTT
1 TTATAATTTAAATAATATATTAAATATTTTA
16007346 TTA-AATTTTAAATAATATATTAAATATTTTA
1 TTATAA-TTTAAATAATATATTAAATATTTTA
16007377 TTATAATTTAAATAA
1 TTATAATTTAAATAA
16007392 CATTCACGAC
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
28 2 0.05
29 15 0.38
30 5 0.12
31 16 0.40
32 2 0.05
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (31 bp):
TTATAATTTAAATAATATATTAAATATTTTA
Found at i:16017069 original size:28 final size:27
Alignment explanation
Indices: 16017012--16017071 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
16017002 AAATTGCAAG
* **
16017012 CATTTTCCATTAAATGCAAATTTATTA
1 CATTTTCCATTAAATGCAAATGTACAA
*
16017039 CATTTTTCATTAAATGCAAATGTACCAA
1 CATTTTCCATTAAATGCAAATGTA-CAA
16017067 CATTT
1 CATTT
16017072 CTTGTTAAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 22 0.79
28 6 0.21
ACGTcount: A:0.37, C:0.17, G:0.05, T:0.42
Consensus pattern (27 bp):
CATTTTCCATTAAATGCAAATGTACAA
Found at i:16019185 original size:2 final size:2
Alignment explanation
Indices: 16019178--16019202 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
16019168 TTGCTGATTT
16019178 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
16019203 AACTACGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:16020817 original size:36 final size:36
Alignment explanation
Indices: 16020777--16020845 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
16020767 ACATATGATG
16020777 ATAAAAAAATAATATAA-AAATATAAAAATAATATTT
1 ATAAAAAAATAATA-AATAAATATAAAAATAATATTT
***
16020813 ATAAAATTGTAATAAATAAATATAAAAATAATA
1 ATAAAAAAATAATAAATAAATATAAAAATAATA
16020846 ATATTTATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
35 2 0.07
36 27 0.93
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.30
Consensus pattern (36 bp):
ATAAAAAAATAATAAATAAATATAAAAATAATATTT
Found at i:16020846 original size:39 final size:38
Alignment explanation
Indices: 16020784--16020876 Score: 116
Period size: 39 Copynumber: 2.4 Consensus size: 38
16020774 ATGATAAAAA
* *
16020784 AATAATATAAAAATATAAAAATAATATTTATAAAATTGT
1 AATAA-ATAAATATAAAAAAATAATATTTATAAAATTGT
* *
16020823 AATAAATAAATATAAAAATAATAATATTTATAAATTTTT
1 AATAAATAAATATAAAAA-AATAATATTTATAAAATTGT
16020862 AATAAA-ATAATATAA
1 AATAAATA-AATATAA
16020877 GTTAGAGAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
38 12 0.25
39 36 0.75
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (38 bp):
AATAAATAAATATAAAAAAATAATATTTATAAAATTGT
Found at i:16021987 original size:87 final size:87
Alignment explanation
Indices: 16021841--16022016 Score: 262
Period size: 87 Copynumber: 2.0 Consensus size: 87
16021831 ATACAGGAAA
* * *
16021841 TGCAATTAAGGAAGATATCCAGAAATCTGAACTTAAGCTGGCTACTGATGGTTCTGTCCAAAATG
1 TGCAATTAAGGAAGATAACCAGAAATCTGAACTTAAGCAGGCTACTGATGGTGCTGTCCAAAATG
* * *
16021906 AGTTTACTGATATGGAGAATAC
66 AGGTTACTGAAATGCAGAATAC
* * *
16021928 TGCAATTAAGGAAGATAACCTGACATCTGAACTTAAGGAGGCTACTGATGGTGCTGTCCAAAATG
1 TGCAATTAAGGAAGATAACCAGAAATCTGAACTTAAGCAGGCTACTGATGGTGCTGTCCAAAATG
*
16021993 AGGTTACTGAAATGCAGGATAC
66 AGGTTACTGAAATGCAGAATAC
16022015 TG
1 TG
16022017 GGGTTGAGCA
Statistics
Matches: 79, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
87 79 1.00
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (87 bp):
TGCAATTAAGGAAGATAACCAGAAATCTGAACTTAAGCAGGCTACTGATGGTGCTGTCCAAAATG
AGGTTACTGAAATGCAGAATAC
Found at i:16026376 original size:12 final size:12
Alignment explanation
Indices: 16026359--16026383 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
16026349 TAAAAGTATG
16026359 TAAAAATATTAT
1 TAAAAATATTAT
16026371 TAAAAATATTAT
1 TAAAAATATTAT
16026383 T
1 T
16026384 TATAATTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TAAAAATATTAT
Found at i:16026420 original size:18 final size:18
Alignment explanation
Indices: 16026399--16026433 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
16026389 TTTAAATTTT
* *
16026399 ATTAATATTTTTTTAATG
1 ATTAAAATTTTATTAATG
16026417 ATTAAAATTTTATTAAT
1 ATTAAAATTTTATTAAT
16026434 TTTTTATTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (18 bp):
ATTAAAATTTTATTAATG
Found at i:16026556 original size:12 final size:12
Alignment explanation
Indices: 16026536--16026566 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
16026526 AATTTATCAT
*
16026536 ATTTGATTTTTG
1 ATTTAATTTTTG
16026548 ATTTAATTTTTG
1 ATTTAATTTTTG
16026560 ATTTAAT
1 ATTTAAT
16026567 CATTTTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.26, C:0.00, G:0.10, T:0.65
Consensus pattern (12 bp):
ATTTAATTTTTG
Found at i:16033677 original size:22 final size:22
Alignment explanation
Indices: 16033652--16033730 Score: 52
Period size: 28 Copynumber: 3.3 Consensus size: 22
16033642 TTAATTAATA
16033652 TATAAAAATTAAAAATAAAATTTAT
1 TATAAAAATTAAAAATAAAA--T-T
* *
16033677 ATATATAAAATTTTAAAATAAAATA
1 -TATA-AAAA-TTAAAAATAAAATT
* *
16033702 TATAAAAA-TAAAAATTAAGTT
1 TATAAAAATTAAAAATAAAATT
16033723 TAATAAAA
1 T-ATAAAA
16033731 TATATTTTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
21 10 0.23
22 6 0.14
23 4 0.09
24 4 0.09
26 5 0.11
27 4 0.09
28 11 0.25
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (22 bp):
TATAAAAATTAAAAATAAAATT
Found at i:16033694 original size:28 final size:28
Alignment explanation
Indices: 16033649--16033719 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
16033639 TATTTAATTA
*
16033649 ATATATAAAAATTAAAAATAAAATTTAT
1 ATATATAAAAATTAAAAATAAAATATAT
* *
16033677 ATATATAAAATTTTAAAATAAAATATAT
1 ATATATAAAAATTAAAAATAAAATATAT
* *
16033705 AAAAATAAAAATTAA
1 ATATATAAAAATTAA
16033720 GTTTAATAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (28 bp):
ATATATAAAAATTAAAAATAAAATATAT
Found at i:16033759 original size:16 final size:16
Alignment explanation
Indices: 16033738--16033814 Score: 57
Period size: 16 Copynumber: 4.6 Consensus size: 16
16033728 AAATATATTT
16033738 TTTATATAAAAATAAA
1 TTTATATAAAAATAAA
** *
16033754 TTTATATATAATTTACA
1 TTTATATA-AAAATAAA
*
16033771 TATATA-AAAAATTAAAAA
1 TTTATATAAAAA-T--AAA
* *
16033789 TTTATATATATATAAA
1 TTTATATAAAAATAAA
16033805 TTTATATAAA
1 TTTATATAAA
16033815 TTTAGATTGA
Statistics
Matches: 45, Mismatches: 11, Indels: 10
0.68 0.17 0.15
Matches are distributed among these distances:
15 2 0.04
16 22 0.49
17 10 0.22
18 8 0.18
19 3 0.07
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (16 bp):
TTTATATAAAAATAAA
Found at i:16033800 original size:95 final size:93
Alignment explanation
Indices: 16033595--16033789 Score: 213
Period size: 94 Copynumber: 2.1 Consensus size: 93
16033585 TTTAATTGAT
*
16033595 AAAATAAAA-ATA-AAAATATAATTAAATTAAGTTTAATAAGATTATATTTAATTAATATATAAA
1 AAAATAAAATATATAAAA-ATAA--AAATTAAGTTTAATAAGAATATATTT-ATT-ATATATAAA
* * *
16033658 AATTAAAAATAAAATTTATATATATAAAATTTT
61 AATTAAAAATAAAATTTACATATATAAAAATTA
16033691 AAAATAAAATATATAAAAATAAAAATTAAGTTTAATAA-AATATATTT-TT-TATATAAAAA-TA
1 AAAATAAAATATATAAAAATAAAAATTAAGTTTAATAAGAATATATTTATTATATATAAAAATTA
*
16033752 AATTTATATATAATTTACATATATAAAAAATTA
66 AA---A-ATAAAATTTACATATAT-AAAAATTA
16033785 AAAAT
1 AAAAT
16033790 TTATATATAT
Statistics
Matches: 87, Mismatches: 5, Indels: 16
0.81 0.05 0.15
Matches are distributed among these distances:
89 4 0.05
90 10 0.11
92 3 0.03
93 15 0.17
94 19 0.22
95 16 0.18
96 9 0.10
97 7 0.08
98 4 0.05
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.38
Consensus pattern (93 bp):
AAAATAAAATATATAAAAATAAAAATTAAGTTTAATAAGAATATATTTATTATATATAAAAATTA
AAAATAAAATTTACATATATAAAAATTA
Found at i:16034154 original size:21 final size:20
Alignment explanation
Indices: 16034117--16034155 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
16034107 TAATTAAAAC
* *
16034117 TAATAAAATTTATTATTACA
1 TAATAAAAATGATTATTACA
16034137 TAATAAAAATGATATATTA
1 TAATAAAAATGAT-TATTA
16034156 ATATTTTGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (20 bp):
TAATAAAAATGATTATTACA
Found at i:16034368 original size:18 final size:18
Alignment explanation
Indices: 16034321--16034399 Score: 68
Period size: 18 Copynumber: 4.2 Consensus size: 18
16034311 TTTTATTATT
* *
16034321 ATTTTTTTATCCTAATTA
1 ATTTTATTATCATAATTA
*
16034339 ATTTTATAATTATAATAATTA
1 A-TTT-T-ATTATCATAATTA
*
16034360 ATTTTATTATCATCATTA
1 ATTTTATTATCATAATTA
* * *
16034378 TTTTTATTTTCATAATTC
1 ATTTTATTATCATAATTA
16034396 ATTT
1 ATTT
16034400 AAATAAAATT
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
18 29 0.60
19 4 0.08
20 4 0.08
21 11 0.23
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTTTATTATCATAATTA
Found at i:16040377 original size:7 final size:7
Alignment explanation
Indices: 16040365--16040393 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
16040355 TAATAAAAAA
16040365 TTTATAT
1 TTTATAT
16040372 TTTATAT
1 TTTATAT
16040379 TTTATAT
1 TTTATAT
16040386 TTTATAT
1 TTTATAT
16040393 T
1 T
16040394 AATATAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
TTTATAT
Found at i:16040412 original size:12 final size:12
Alignment explanation
Indices: 16040395--16040437 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
16040385 TTTTATATTA
16040395 ATATAAATTATG
1 ATATAAATTATG
* *
16040407 ATAT-AATTTTT
1 ATATAAATTATG
*
16040418 ATATAAAATATG
1 ATATAAATTATG
16040430 ATATAAAT
1 ATATAAAT
16040438 ATATAAATTT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
11 9 0.38
12 15 0.62
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (12 bp):
ATATAAATTATG
Found at i:16040453 original size:20 final size:20
Alignment explanation
Indices: 16040430--16040473 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
16040420 ATAAAATATG
*
16040430 ATATAAATATATAAATTTTA
1 ATATAAATACATAAATTTTA
**
16040450 ATATTTATACATAAATTTTA
1 ATATAAATACATAAATTTTA
16040470 ATAT
1 ATAT
16040474 TTTATTCAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (20 bp):
ATATAAATACATAAATTTTA
Found at i:16048510 original size:25 final size:27
Alignment explanation
Indices: 16048482--16048538 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
16048472 AACTAATACC
*
16048482 AGAAAAAAC-CT-ATCACCACATACAA
1 AGAAAAAACTCTCATCAACACATACAA
* *
16048507 AGAAAAAACTTTCATCAACACATGCAA
1 AGAAAAAACTCTCATCAACACATACAA
16048534 AGAAA
1 AGAAA
16048539 TCAATGTATG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 9 0.33
26 1 0.04
27 17 0.63
ACGTcount: A:0.56, C:0.23, G:0.07, T:0.14
Consensus pattern (27 bp):
AGAAAAAACTCTCATCAACACATACAA
Found at i:16049755 original size:2 final size:2
Alignment explanation
Indices: 16049748--16049774 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
16049738 TTGTTCCATT
16049748 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
16049775 GTGAAATGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:16050442 original size:19 final size:21
Alignment explanation
Indices: 16050404--16050444 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 21
16050394 AAAAATGCTT
16050404 ATGTGACCATTAATTTTATTG
1 ATGTGACCATTAATTTTATTG
*
16050425 ATGTGA-CATTGA-TTTATTG
1 ATGTGACCATTAATTTTATTG
16050444 A
1 A
16050445 CATGGCATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
20 5 0.26
21 6 0.32
ACGTcount: A:0.29, C:0.07, G:0.17, T:0.46
Consensus pattern (21 bp):
ATGTGACCATTAATTTTATTG
Found at i:16051273 original size:14 final size:15
Alignment explanation
Indices: 16051231--16051266 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
16051221 ATAAAAATGA
16051231 TAATAATAATATTAT
1 TAATAATAATATTAT
*
16051246 TAAT-ATGATATTAT
1 TAATAATAATATTAT
16051260 TAATAAT
1 TAATAAT
16051267 TAATTATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (15 bp):
TAATAATAATATTAT
Found at i:16051676 original size:29 final size:33
Alignment explanation
Indices: 16051619--16051680 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 33
16051609 TGGATTAAAA
16051619 TTATCAAATTAAAATAGTATGAGAACTAAATTT
1 TTATCAAATTAAAATAGTATGAGAACTAAATTT
*
16051652 TTAT-AAATTATAATA-TA-GA-AACTAAATTT
1 TTATCAAATTAAAATAGTATGAGAACTAAATTT
16051681 CAAAATTTCG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 10 0.36
30 2 0.07
31 2 0.07
32 10 0.36
33 4 0.14
ACGTcount: A:0.50, C:0.05, G:0.06, T:0.39
Consensus pattern (33 bp):
TTATCAAATTAAAATAGTATGAGAACTAAATTT
Found at i:16057020 original size:2 final size:2
Alignment explanation
Indices: 16057009--16057041 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
16056999 CAAAGTTTAA
16057009 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
16057042 TTCATTTGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:16058581 original size:15 final size:15
Alignment explanation
Indices: 16058561--16058590 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
16058551 TTTAAAATCT
*
16058561 TCAATTTACATTAGG
1 TCAATTGACATTAGG
16058576 TCAATTGACATTAGG
1 TCAATTGACATTAGG
16058591 AATGTCTGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (15 bp):
TCAATTGACATTAGG
Done.