Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25814696
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 122000 characters in sequence are not A, C, G, or T
File 86 of 126
Found at i:17047998 original size:22 final size:22
Alignment explanation
Indices: 17047970--17048029 Score: 102
Period size: 22 Copynumber: 2.7 Consensus size: 22
17047960 ATCAATTCTG
* *
17047970 TAAGACCCCCGGGCATGATTTT
1 TAAGACCTCCGGGCATGATTTC
17047992 TAAGACCTCCGGGCATGATTTC
1 TAAGACCTCCGGGCATGATTTC
17048014 TAAGACCTCCGGGCAT
1 TAAGACCTCCGGGCAT
17048030 AAATTTGATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (22 bp):
TAAGACCTCCGGGCATGATTTC
Found at i:17048086 original size:131 final size:131
Alignment explanation
Indices: 17047723--17048247 Score: 840
Period size: 131 Copynumber: 4.0 Consensus size: 131
17047713 CAAAGATTTT
* * *
17047723 ATGATTTTTAAGACCTCCGGGCATGATTTGTAAGACCTCCGGGCATAAATTTGATTCGCGGTGTT
1 ATGATTTTTAAGACCTCCGGGCATGATTTCTAAGACCTCCGGGCATAAATTTGATTCACCGTGTT
* * *
17047788 ATCCCGATCAATTCTATAATTTTGACTTACGATGTTATCCCAATCAATTCTGTAAGACCTCCGGG
66 ATCCTGATCAATTCTATAATTTTGACTTACGGTGTTATCCCAATCAATTCTGTAAGACCCCCGGG
17047853 C
131 C
* * * *
17047854 ATGATTTTTAAGACCTCCGGGCA--A-TTCTGAAAGACCTCTGGGTATAAATTTGATTCGCCGTA
1 ATGATTTTTAAGACCTCCGGGCATGATTTCT--AAGACCTCCGGGCATAAATTTGATTCACCGTG
* *
17047916 TTATCCTGATCAATTCTATAATTTTGACTTATGCTGTTATCCCAATCAATTCTGTAAGACCCCCG
64 TTATCCTGATCAATTCTATAATTTTGACTTACGGTGTTATCCCAATCAATTCTGTAAGACCCCCG
17047981 GGC
129 GGC
17047984 ATGATTTTTAAGACCTCCGGGCATGATTTCTAAGACCTCCGGGCATAAATTTGATTCACCGTGTT
1 ATGATTTTTAAGACCTCCGGGCATGATTTCTAAGACCTCCGGGCATAAATTTGATTCACCGTGTT
* * *
17048049 ATCCTGATCAATTTTATAATTTTGACTTGCGGTGTTATCCCAGTCAATTCTGTAAGACCCCCGGG
66 ATCCTGATCAATTCTATAATTTTGACTTACGGTGTTATCCCAATCAATTCTGTAAGACCCCCGGG
17048114 C
131 C
17048115 ATGATTTTTAAGACCTCCGGGCATGATTTCTAAGACCTCCGGGCATAAATTTGATTCACCGTGTT
1 ATGATTTTTAAGACCTCCGGGCATGATTTCTAAGACCTCCGGGCATAAATTTGATTCACCGTGTT
* * * *
17048180 ATCCTGATCAATTTTATAATTTTGACTTGCGGTGTTATCCCAGTCAATTCTGTAAGACCTCCGGG
66 ATCCTGATCAATTCTATAATTTTGACTTACGGTGTTATCCCAATCAATTCTGTAAGACCCCCGGG
17048245 C
131 C
17048246 AT
1 AT
17048248 AAAATTAATT
Statistics
Matches: 370, Mismatches: 19, Indels: 10
0.93 0.05 0.03
Matches are distributed among these distances:
128 3 0.01
129 1 0.00
130 115 0.31
131 246 0.66
132 1 0.00
133 4 0.01
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.34
Consensus pattern (131 bp):
ATGATTTTTAAGACCTCCGGGCATGATTTCTAAGACCTCCGGGCATAAATTTGATTCACCGTGTT
ATCCTGATCAATTCTATAATTTTGACTTACGGTGTTATCCCAATCAATTCTGTAAGACCCCCGGG
C
Found at i:17048129 original size:22 final size:22
Alignment explanation
Indices: 17048101--17048160 Score: 102
Period size: 22 Copynumber: 2.7 Consensus size: 22
17048091 GTCAATTCTG
* *
17048101 TAAGACCCCCGGGCATGATTTT
1 TAAGACCTCCGGGCATGATTTC
17048123 TAAGACCTCCGGGCATGATTTC
1 TAAGACCTCCGGGCATGATTTC
17048145 TAAGACCTCCGGGCAT
1 TAAGACCTCCGGGCAT
17048161 AAATTTGATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (22 bp):
TAAGACCTCCGGGCATGATTTC
Found at i:17048386 original size:73 final size:73
Alignment explanation
Indices: 17048267--17048768 Score: 736
Period size: 73 Copynumber: 6.8 Consensus size: 73
17048257 TCGCTGTGTT
* * * *
17048267 ATCCCGATCATTTCATTTATTTTCTGACTTACGGTTCAGTCCCAGTCATCTTTAATCCTTGATTC
1 ATCCCGGTCATTTCATTTATTCTCTGACTTGCGGTTCAGTCCCAGTCAACTTTAATCCTTGATTC
*
17048332 ACGGTTTA
66 GCGGTTTA
* * * * **
17048340 ATCCCAGTCATTTCATTTATTCTCTGACTTGTGGTTTAGTCGCAGTCATTTTTAATCCTTAGATT
1 ATCCCGGTCATTTCATTTATTCTCTGACTTGCGGTTCAGTCCCAGTCAACTTTAATCCTT-GATT
*
17048405 CGTGGTTTA
65 CGCGGTTTA
*
17048414 ATCCCGGTCATTTCATTTATTCTCTGACTTACGGTTCAGTCCCAGTCAACTTTAATCCTTGATTC
1 ATCCCGGTCATTTCATTTATTCTCTGACTTGCGGTTCAGTCCCAGTCAACTTTAATCCTTGATTC
*
17048479 GTGGTTTA
66 GCGGTTTA
*
17048487 ATCCCGGTCATTTCATTTATTCTCTGACTTACGGTTCAGTCCCAGTCAACTTTAATCCTTGATTC
1 ATCCCGGTCATTTCATTTATTCTCTGACTTGCGGTTCAGTCCCAGTCAACTTTAATCCTTGATTC
17048552 GCGGTTTA
66 GCGGTTTA
* * *
17048560 ATCCCGGTTATTTCATTTATTCTCTGACTTGCGGTTCAGTCCCAGTCATCTTTAATCCTTGAACT
1 ATCCCGGTCATTTCATTTATTCTCTGACTTGCGGTTCAGTCCCAGTCAACTTTAATCCTTG-ATT
*
17048625 CGTGGTTTA
65 CGCGGTTTA
*
17048634 ATCTCGGTCATTTCATTTATTCTCTGACTTGCGGTTCAGTCCCAGTCAACTTTAATCCTTGATTC
1 ATCCCGGTCATTTCATTTATTCTCTGACTTGCGGTTCAGTCCCAGTCAACTTTAATCCTTGATTC
* *
17048699 ACGGCTTA
66 GCGGTTTA
* * * *
17048707 ATCCCGATCATTTCATTAATTGCTC-GACTTGCGGTTCAGTCCCAGTCACCTTTATTCCTTGA
1 ATCCCGGTCATTTCATTTATT-CTCTGACTTGCGGTTCAGTCCCAGTCAACTTTAATCCTTGA
17048769 CCATCAGTGT
Statistics
Matches: 391, Mismatches: 35, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
73 256 0.65
74 135 0.35
ACGTcount: A:0.19, C:0.25, G:0.15, T:0.41
Consensus pattern (73 bp):
ATCCCGGTCATTTCATTTATTCTCTGACTTGCGGTTCAGTCCCAGTCAACTTTAATCCTTGATTC
GCGGTTTA
Found at i:17048533 original size:147 final size:146
Alignment explanation
Indices: 17048267--17048768 Score: 754
Period size: 147 Copynumber: 3.4 Consensus size: 146
17048257 TCGCTGTGTT
*
17048267 ATCCCGATCATTTCATTTATTTTCTGACTTACGGTTCAGTCCCAGTCATCTTTAATCCTTGATTC
1 ATCCCGATCATTTCATTTATTCTCTGACTTACGGTTCAGTCCCAGTCATCTTTAATCCTTGATTC
** * * * * **
17048332 ACGGTTTAATCCCAGTCATTTCATTTATTCTCTGACTTGTGGTTTAGTCGCAGTCATTTTTAATC
66 GTGGTTTAATCCCGGTCATTTCATTTATTCTCTGACTTGCGGTTCAGTCCCAGTCAACTTTAATC
*
17048397 CTTAGATTCGTGGTTTA
131 CTT-GATTCGCGGTTTA
* *
17048414 ATCCCGGTCATTTCATTTATTCTCTGACTTACGGTTCAGTCCCAGTCAACTTTAATCCTTGATTC
1 ATCCCGATCATTTCATTTATTCTCTGACTTACGGTTCAGTCCCAGTCATCTTTAATCCTTGATTC
*
17048479 GTGGTTTAATCCCGGTCATTTCATTTATTCTCTGACTTACGGTTCAGTCCCAGTCAACTTTAATC
66 GTGGTTTAATCCCGGTCATTTCATTTATTCTCTGACTTGCGGTTCAGTCCCAGTCAACTTTAATC
17048544 CTTGATTCGCGGTTTA
131 CTTGATTCGCGGTTTA
* * * *
17048560 ATCCCGGTTATTTCATTTATTCTCTGACTTGCGGTTCAGTCCCAGTCATCTTTAATCCTTGAACT
1 ATCCCGATCATTTCATTTATTCTCTGACTTACGGTTCAGTCCCAGTCATCTTTAATCCTTG-ATT
*
17048625 CGTGGTTTAATCTCGGTCATTTCATTTATTCTCTGACTTGCGGTTCAGTCCCAGTCAACTTTAAT
65 CGTGGTTTAATCCCGGTCATTTCATTTATTCTCTGACTTGCGGTTCAGTCCCAGTCAACTTTAAT
* *
17048690 CCTTGATTCACGGCTTA
130 CCTTGATTCGCGGTTTA
* * * *
17048707 ATCCCGATCATTTCATTAATTGCTC-GACTTGCGGTTCAGTCCCAGTCACCTTTATTCCTTGA
1 ATCCCGATCATTTCATTTATT-CTCTGACTTACGGTTCAGTCCCAGTCATCTTTAATCCTTGA
17048769 CCATCAGTGT
Statistics
Matches: 327, Mismatches: 26, Indels: 5
0.91 0.07 0.01
Matches are distributed among these distances:
146 71 0.22
147 253 0.77
148 3 0.01
ACGTcount: A:0.19, C:0.25, G:0.15, T:0.41
Consensus pattern (146 bp):
ATCCCGATCATTTCATTTATTCTCTGACTTACGGTTCAGTCCCAGTCATCTTTAATCCTTGATTC
GTGGTTTAATCCCGGTCATTTCATTTATTCTCTGACTTGCGGTTCAGTCCCAGTCAACTTTAATC
CTTGATTCGCGGTTTA
Found at i:17048656 original size:220 final size:220
Alignment explanation
Indices: 17048267--17048768 Score: 792
Period size: 220 Copynumber: 2.3 Consensus size: 220
17048257 TCGCTGTGTT
* *
17048267 ATCCCGATCATTTCATTTATTTTCTGACTTACGGTTCAGTCCCAGTCATCTTTAATCCTTGATTC
1 ATCCCGATCATTTCATTTATTCTCTGACTTACGGTTCAGTCCCAGTCAACTTTAATCCTTGATTC
* * * *
17048332 ACGGTTTAATCCCAGTCATTTCATTTATTCTCTGACTTGTGGTTTAGTCGCAGTCATTTTTAATC
66 ACGGTTTAATCCCAGTCATTTCATTTATTCTCTGACTTGCGGTTCAGTCCCAGTCATCTTTAATC
*
17048397 CTTAGATTCGTGGTTTAATCCCGGTCATTTCATTTATTCTCTGACTTACGGTTCAGTCCCAGTCA
131 CTTAGACTCGTGGTTTAATCCCGGTCATTTCATTTATTCTCTGACTTACGGTTCAGTCCCAGTCA
** *
17048462 ACTTTAATCCTTGATTCGTGGTTTA
196 ACTTTAATCCTTGATTCACGGCTTA
*
17048487 ATCCCGGTCATTTCATTTATTCTCTGACTTACGGTTCAGTCCCAGTCAACTTTAATCCTTGATTC
1 ATCCCGATCATTTCATTTATTCTCTGACTTACGGTTCAGTCCCAGTCAACTTTAATCCTTGATTC
* * *
17048552 GCGGTTTAATCCCGGTTATTTCATTTATTCTCTGACTTGCGGTTCAGTCCCAGTCATCTTTAATC
66 ACGGTTTAATCCCAGTCATTTCATTTATTCTCTGACTTGCGGTTCAGTCCCAGTCATCTTTAATC
* *
17048617 CTT-GAACTCGTGGTTTAATCTCGGTCATTTCATTTATTCTCTGACTTGCGGTTCAGTCCCAGTC
131 CTTAG-ACTCGTGGTTTAATCCCGGTCATTTCATTTATTCTCTGACTTACGGTTCAGTCCCAGTC
17048681 AACTTTAATCCTTGATTCACGGCTTA
195 AACTTTAATCCTTGATTCACGGCTTA
* * * *
17048707 ATCCCGATCATTTCATTAATTGCTC-GACTTGCGGTTCAGTCCCAGTCACCTTTATTCCTTGA
1 ATCCCGATCATTTCATTTATT-CTCTGACTTACGGTTCAGTCCCAGTCAACTTTAATCCTTGA
17048769 CCATCAGTGT
Statistics
Matches: 259, Mismatches: 21, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
219 1 0.00
220 255 0.98
221 3 0.01
ACGTcount: A:0.19, C:0.25, G:0.15, T:0.41
Consensus pattern (220 bp):
ATCCCGATCATTTCATTTATTCTCTGACTTACGGTTCAGTCCCAGTCAACTTTAATCCTTGATTC
ACGGTTTAATCCCAGTCATTTCATTTATTCTCTGACTTGCGGTTCAGTCCCAGTCATCTTTAATC
CTTAGACTCGTGGTTTAATCCCGGTCATTTCATTTATTCTCTGACTTACGGTTCAGTCCCAGTCA
ACTTTAATCCTTGATTCACGGCTTA
Found at i:17049337 original size:16 final size:15
Alignment explanation
Indices: 17049301--17049343 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
17049291 CAACCTCGTT
17049301 CAAAAGAAAAAAAAAA
1 CAAAA-AAAAAAAAAA
* *
17049317 CAAAAAAAACAGAAA
1 CAAAAAAAAAAAAAA
17049332 CAAAAAAAAAAA
1 CAAAAAAAAAAA
17049344 CACAACAGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
15 18 0.78
16 5 0.22
ACGTcount: A:0.86, C:0.09, G:0.05, T:0.00
Consensus pattern (15 bp):
CAAAAAAAAAAAAAA
Found at i:17049348 original size:29 final size:29
Alignment explanation
Indices: 17049307--17049368 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 29
17049297 CGTTCAAAAG
17049307 AAAAAAAAAACAAAAAAAACAG-AAACAA
1 AAAAAAAAAACAAAAAAAACAGAAAACAA
* *
17049335 AAAAAAAAACACAACAGAAACAGAAAACAA
1 AAAAAAAAA-ACAAAAAAAACAGAAAACAA
17049365 AAAA
1 AAAA
17049369 CACAGTCCTC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 9 0.30
29 11 0.37
30 10 0.33
ACGTcount: A:0.82, C:0.13, G:0.05, T:0.00
Consensus pattern (29 bp):
AAAAAAAAAACAAAAAAAACAGAAAACAA
Found at i:17049361 original size:25 final size:23
Alignment explanation
Indices: 17049305--17049372 Score: 86
Period size: 23 Copynumber: 2.9 Consensus size: 23
17049295 CTCGTTCAAA
*
17049305 AGAAA-AAAAAAACAAAA-AAAAC
1 AGAAACAAAAAAA-AAAACACAAC
17049327 AGAAACAAAAAAAAAAACACAAC
1 AGAAACAAAAAAAAAAACACAAC
17049350 AGAAACAGAAAACAAAAAACACA
1 AGAAACA-AAAA-AAAAAACACA
17049373 GTCCTCGCCT
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
22 9 0.22
23 18 0.44
24 4 0.10
25 10 0.24
ACGTcount: A:0.79, C:0.15, G:0.06, T:0.00
Consensus pattern (23 bp):
AGAAACAAAAAAAAAAACACAAC
Found at i:17053876 original size:2 final size:2
Alignment explanation
Indices: 17053869--17053904 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
17053859 TAAAATTATC
17053869 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
17053905 TGGAAAGGAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:17059457 original size:9 final size:9
Alignment explanation
Indices: 17059444--17059504 Score: 59
Period size: 9 Copynumber: 6.4 Consensus size: 9
17059434 GAAAATTAAA
17059444 AAAAAATTCT
1 AAAAAATT-T
17059454 AAAAAATTTT
1 AAAAAA-TTT
*
17059464 AAAACATTT
1 AAAAAATTT
17059473 AAAAAATTTT
1 AAAAAA-TTT
*
17059483 AAAAACTTT
1 AAAAAATTT
* *
17059492 CAAAAATCT
1 AAAAAATTT
17059501 AAAA
1 AAAA
17059505 TTAAAAAAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
9 20 0.48
10 20 0.48
11 2 0.05
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.31
Consensus pattern (9 bp):
AAAAAATTT
Found at i:17059457 original size:10 final size:10
Alignment explanation
Indices: 17059305--17059504 Score: 85
Period size: 10 Copynumber: 20.5 Consensus size: 10
17059295 ATCTTTAAAA
17059305 TAAAAAATTC
1 TAAAAAATTC
*
17059315 AAAAAAATT-
1 TAAAAAATTC
*
17059324 T--AAAATTT
1 TAAAAAATTC
* * *
17059332 TCAAATATTA
1 TAAAAAATTC
*
17059342 TAAGAAATTC
1 TAAAAAATTC
*
17059352 -AAACAATTC
1 TAAAAAATTC
*
17059361 TAAAAAATTT
1 TAAAAAATTC
* *
17059371 TTAAAAATCC
1 TAAAAAATTC
* * * *
17059381 GAACAATTTT
1 TAAAAAATTC
*
17059391 TTAAAAATTC
1 TAAAAAATTC
17059401 T-AAAAATTC
1 TAAAAAATTC
17059410 TAAAATAATATC
1 TAAAA-AAT-TC
*
17059422 -AAAAAATTTT
1 TAAAAAA-TTC
* *
17059432 TAGAAAATTAA
1 TAAAAAATT-C
*
17059443 AAAAAAATTC
1 TAAAAAATTC
*
17059453 TAAAAAATTT
1 TAAAAAATTC
*
17059463 TAAAACATT-
1 TAAAAAATTC
*
17059472 TAAAAAATTT
1 TAAAAAATTC
*
17059482 TAAAAACTT-
1 TAAAAAATTC
*
17059491 TCAAAAA-TC
1 TAAAAAATTC
17059500 TAAAA
1 TAAAA
17059505 TTAAAAAAAA
Statistics
Matches: 138, Mismatches: 40, Indels: 25
0.68 0.20 0.12
Matches are distributed among these distances:
7 6 0.04
8 2 0.01
9 33 0.24
10 75 0.54
11 20 0.14
12 2 0.01
ACGTcount: A:0.57, C:0.08, G:0.01, T:0.33
Consensus pattern (10 bp):
TAAAAAATTC
Found at i:17059459 original size:21 final size:22
Alignment explanation
Indices: 17059402--17059487 Score: 65
Period size: 21 Copynumber: 4.1 Consensus size: 22
17059392 TAAAAATTCT
*
17059402 AAAAATTCTAAAATAA-TATCAA
1 AAAAATTCTAAAA-AATTATAAA
* * *
17059424 AAAATTTTTAGAAAATTA-AAA
1 AAAAATTCTAAAAAATTATAAA
*
17059445 AAAAATTCTAAAAAATT-T-TA
1 AAAAATTCTAAAAAATTATAAA
* *
17059465 AAACATT-TAAAAAATTTTAAA
1 AAAAATTCTAAAAAATTATAAA
17059486 AA
1 AA
17059488 CTTTCAAAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 9
0.72 0.14 0.13
Matches are distributed among these distances:
19 9 0.18
20 8 0.16
21 21 0.42
22 12 0.24
ACGTcount: A:0.63, C:0.05, G:0.01, T:0.31
Consensus pattern (22 bp):
AAAAATTCTAAAAAATTATAAA
Found at i:17059467 original size:19 final size:19
Alignment explanation
Indices: 17059325--17059487 Score: 71
Period size: 19 Copynumber: 8.7 Consensus size: 19
17059315 AAAAAAATTT
* *
17059325 AAAATTTTCAAATATTATAA
1 AAAATTTT-AAAAATTCTAA
* *
17059345 GAAA-TTCAAACAATTCTAA
1 AAAATTTTAAA-AATTCTAA
* *
17059364 AAAATTTTTAAAAATCCGAA
1 AAAA-TTTTAAAAATTCTAA
**
17059384 CAATTTTTTAAAAATTCT-A
1 -AAAATTTTAAAAATTCTAA
*
17059403 AAAATTCTAAAATAATATC-AA
1 AAAATT-TTAAA-AAT-TCTAA
17059424 AAAATTTTTAGAAAA-T-T--
1 AAAA-TTTTA-AAAATTCTAA
17059441 AAAA----AAAAATTCTAA
1 AAAATTTTAAAAATTCTAA
17059456 AAAATTTTAAAACATT-TAA
1 AAAATTTTAAAA-ATTCTAA
17059475 AAAATTTTAAAAA
1 AAAATTTTAAAAA
17059488 CTTTCAAAAA
Statistics
Matches: 107, Mismatches: 16, Indels: 42
0.65 0.10 0.25
Matches are distributed among these distances:
11 4 0.04
12 2 0.02
13 1 0.01
15 4 0.04
17 4 0.04
18 8 0.07
19 36 0.34
20 26 0.24
21 18 0.17
22 4 0.04
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.34
Consensus pattern (19 bp):
AAAATTTTAAAAATTCTAA
Found at i:17060204 original size:22 final size:22
Alignment explanation
Indices: 17060173--17060214 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
17060163 TTTAATATTT
* *
17060173 AAATTTTTTTTGAATTTTTAAA
1 AAATTGTTTTAGAATTTTTAAA
*
17060195 AAATTGTTTTAGTATTTTTA
1 AAATTGTTTTAGAATTTTTA
17060215 TAATGTTTTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (22 bp):
AAATTGTTTTAGAATTTTTAAA
Found at i:17060260 original size:10 final size:10
Alignment explanation
Indices: 17060237--17060410 Score: 54
Period size: 10 Copynumber: 17.4 Consensus size: 10
17060227 GTTAAATATT
*
17060237 TTTTTATAAA
1 TTTTTAAAAA
17060247 -TTTTAAAAA
1 TTTTTAAAAA
17060256 TTTTTAAAATA
1 TTTTTAAAA-A
*** *
17060267 CTTTTTTGTAT
1 -TTTTTAAAAA
17060278 TCTTTTCAAAAA
1 T-TTTT-AAAAA
*
17060290 TTTTAAAAAA
1 TTTTTAAAAA
* *
17060300 TTTTTAGAAC
1 TTTTTAAAAA
** *
17060310 TGCTT-AGAA
1 TTTTTAAAAA
* *
17060319 TGTTTT-TAAG
1 T-TTTTAAAAA
*
17060329 TTTTTAAAAT
1 TTTTTAAAAA
** *
17060339 TTTTTTGAAG
1 TTTTTAAAAA
*
17060349 TTTTTAAAAT
1 TTTTTAAAAA
17060359 TTTTTAGAAAA
1 TTTTTA-AAAA
17060370 -TTTT-AAAA
1 TTTTTAAAAA
**
17060378 TTTTT-ATGA
1 TTTTTAAAAA
*
17060387 TTTTTAAAAT
1 TTTTTAAAAA
*
17060397 TTTTTTAAAA
1 TTTTTAAAAA
17060407 TTTT
1 TTTT
17060411 AGATTTTTTG
Statistics
Matches: 115, Mismatches: 39, Indels: 20
0.66 0.22 0.11
Matches are distributed among these distances:
8 4 0.03
9 25 0.22
10 67 0.58
11 11 0.10
12 8 0.07
ACGTcount: A:0.36, C:0.03, G:0.06, T:0.55
Consensus pattern (10 bp):
TTTTTAAAAA
Found at i:17060341 original size:9 final size:9
Alignment explanation
Indices: 17060329--17060410 Score: 65
Period size: 9 Copynumber: 8.4 Consensus size: 9
17060319 TGTTTTTAAG
17060329 TTTTTAAAA
1 TTTTTAAAA
* *
17060338 TTTTTTTGAAG
1 --TTTTTAAAA
17060349 TTTTTAAAA
1 TTTTTAAAA
17060358 TTTTTTAGAAA
1 -TTTTTA-AAA
*
17060369 ATTTTAAAA
1 TTTTTAAAA
**
17060378 TTTTTATGA
1 TTTTTAAAA
17060387 TTTTTAAAA
1 TTTTTAAAA
17060396 TTTTTTTAAAA
1 --TTTTTAAAA
17060407 TTTT
1 TTTT
17060411 AGATTTTTTG
Statistics
Matches: 57, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
9 27 0.47
10 11 0.19
11 19 0.33
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:17060349 original size:20 final size:20
Alignment explanation
Indices: 17060321--17060402 Score: 107
Period size: 20 Copynumber: 4.2 Consensus size: 20
17060311 GCTTAGAATG
17060321 TTTTT-AAGTTTTTAAAATT
1 TTTTTGAAGTTTTTAAAATT
17060340 TTTTTGAAGTTTTTAAAATT
1 TTTTTGAAGTTTTTAAAATT
* **
17060360 TTTTAGAAAATTTTAAAATT
1 TTTTTGAAGTTTTTAAAATT
*
17060380 TTTATG-A-TTTTTAAAATT
1 TTTTTGAAGTTTTTAAAATT
17060398 TTTTT
1 TTTTT
17060403 AAAATTTTAG
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
18 14 0.25
19 6 0.11
20 35 0.64
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (20 bp):
TTTTTGAAGTTTTTAAAATT
Found at i:17060389 original size:29 final size:27
Alignment explanation
Indices: 17060357--17060424 Score: 70
Period size: 28 Copynumber: 2.5 Consensus size: 27
17060347 AGTTTTTAAA
17060357 ATTTTTTAGAAAATTTTAAAATTTTTATG
1 ATTTTTTAGAAAATTTTAAAA-TTTTA-G
*
17060386 A-TTTTTA-AAATTTTTTTAAAATTTTAG
1 ATTTTTTAGAAA--ATTTTAAAATTTTAG
17060413 ATTTTTT-GAAAA
1 ATTTTTTAGAAAA
17060425 AATAATATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 11
0.72 0.04 0.24
Matches are distributed among these distances:
27 5 0.15
28 19 0.58
29 9 0.27
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (27 bp):
ATTTTTTAGAAAATTTTAAAATTTTAG
Found at i:17060410 original size:19 final size:19
Alignment explanation
Indices: 17060330--17060424 Score: 86
Period size: 20 Copynumber: 5.0 Consensus size: 19
17060320 GTTTTTAAGT
**
17060330 TTTTAAAATTTTTTTGAAGT
1 TTTTAAAATTTTTTT-AAAA
*
17060350 TTTTAAAATTTTTTAGAAAA
1 TTTTAAAATTTTTT-TAAAA
* * *
17060370 TTTTAAAATTTTTAT-GAT
1 TTTTAAAATTTTTTTAAAA
17060388 TTTTAAAATTTTTTTAAAA
1 TTTTAAAATTTTTTTAAAA
* *
17060407 TTTT-AGATTTTTTGAAAA
1 TTTTAAAATTTTTTTAAAA
17060425 AATAATATTA
Statistics
Matches: 61, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
18 27 0.44
19 5 0.08
20 29 0.48
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (19 bp):
TTTTAAAATTTTTTTAAAA
Found at i:17061232 original size:22 final size:22
Alignment explanation
Indices: 17061206--17061248 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
17061196 GTATATTTAT
*
17061206 ATTTGTATCTCTAGAATTAAGC
1 ATTTGTATCCCTAGAATTAAGC
17061228 ATTTGTATCCCTAGAATTAAG
1 ATTTGTATCCCTAGAATTAAG
17061249 GAAGATTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.40
Consensus pattern (22 bp):
ATTTGTATCCCTAGAATTAAGC
Found at i:17065081 original size:22 final size:22
Alignment explanation
Indices: 17065055--17065098 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
17065045 TGTATATTTA
*
17065055 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
17065077 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
17065099 AAAGATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:17065687 original size:200 final size:200
Alignment explanation
Indices: 17065337--17065723 Score: 747
Period size: 200 Copynumber: 1.9 Consensus size: 200
17065327 ATACAAGAGT
17065337 AACACAATAATTAATATATTTATAATTCAGATATTACATTAAAAATATTTAAAATTTAGGTACTA
1 AACACAATAATTAATATATTTATAATTCAGATATTACATTAAAAATATTTAAAATTTAGGTACTA
17065402 TATTAAATATTTTATTATATTTTAAAGCAATTCATGACATTAATTATATAACCAATGTAGCCTTA
66 TATTAAATATTTTATTATATTTTAAAGCAATTCATGACATTAATTATATAACCAATGTAGCCTTA
*
17065467 TTGAAGAGGTAGTCTGTCTATTGGCTTCCTTGCAACCAGAGAAAAAAAGAACACGTTGAAAGAAA
131 TTGAAGAGGTAGTCTGTCTATTGGCTTCCTTGCAACCAAAGAAAAAAAGAACACGTTGAAAGAAA
17065532 AAAAG
196 AAAAG
17065537 AACACAATAATTAATATATTTATAATTCAGATATTACATTAAAAATATTTAAAATTTAGGTACTA
1 AACACAATAATTAATATATTTATAATTCAGATATTACATTAAAAATATTTAAAATTTAGGTACTA
17065602 TATTAAATATTTTATTATATTTTAAAGCAATTCATGACATTAATTATATAACCAATGTAGCCTTA
66 TATTAAATATTTTATTATATTTTAAAGCAATTCATGACATTAATTATATAACCAATGTAGCCTTA
* *
17065667 TTGAAGTGGTAGTTTGTCTATTGGCTTCCTTGCAACCAAAGAAAAAAAGAACACGTT
131 TTGAAGAGGTAGTCTGTCTATTGGCTTCCTTGCAACCAAAGAAAAAAAGAACACGTT
17065724 TAAGTCATAT
Statistics
Matches: 184, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
200 184 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (200 bp):
AACACAATAATTAATATATTTATAATTCAGATATTACATTAAAAATATTTAAAATTTAGGTACTA
TATTAAATATTTTATTATATTTTAAAGCAATTCATGACATTAATTATATAACCAATGTAGCCTTA
TTGAAGAGGTAGTCTGTCTATTGGCTTCCTTGCAACCAAAGAAAAAAAGAACACGTTGAAAGAAA
AAAAG
Found at i:17066448 original size:37 final size:37
Alignment explanation
Indices: 17066393--17066467 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
17066383 CACTTTTACA
*
17066393 AATAGATGTGGTTTTATTGTTTCCTTGTGTAGTATAG
1 AATAGATGTGGTTTTATTGTTTCCTAGTGTAGTATAG
*
17066430 AATATATGTGGTTTTATTGTTTCCTAGTGTAGTATAG
1 AATAGATGTGGTTTTATTGTTTCCTAGTGTAGTATAG
17066467 A
1 A
17066468 TTAGGGATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.24, C:0.05, G:0.23, T:0.48
Consensus pattern (37 bp):
AATAGATGTGGTTTTATTGTTTCCTAGTGTAGTATAG
Found at i:17067260 original size:28 final size:28
Alignment explanation
Indices: 17067195--17067267 Score: 69
Period size: 28 Copynumber: 2.6 Consensus size: 28
17067185 AGTGAGTTTC
* *
17067195 ATATTAG-TTAAAAGA-TTTATAGTTTAA
1 ATATTAGATTAAAA-ATTTTAAAGTTCAA
* * *
17067222 GTATCACATTAAAAATTTTAAAGTTCAA
1 ATATTAGATTAAAAATTTTAAAGTTCAA
*
17067250 ATATTAGATTAAATATTT
1 ATATTAGATTAAAAATTT
17067268 CACTATAATT
Statistics
Matches: 35, Mismatches: 9, Indels: 3
0.74 0.19 0.06
Matches are distributed among these distances:
27 5 0.14
28 30 0.86
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.42
Consensus pattern (28 bp):
ATATTAGATTAAAAATTTTAAAGTTCAA
Found at i:17067846 original size:19 final size:19
Alignment explanation
Indices: 17067822--17067860 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
17067812 AGTCATCACT
17067822 AATTTTTTTATTAAGTATG
1 AATTTTTTTATTAAGTATG
17067841 AATTTTTTTATTAAGTATG
1 AATTTTTTTATTAAGTATG
17067860 A
1 A
17067861 TTAATTACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.56
Consensus pattern (19 bp):
AATTTTTTTATTAAGTATG
Found at i:17069004 original size:28 final size:28
Alignment explanation
Indices: 17068973--17069026 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
17068963 TTCAATTCAT
**
17068973 AATAAAATTTACAATTCAATAAAATATA
1 AATAAAATACACAATTCAATAAAATATA
17069001 AATAAAATACACAATTCAATAAAATA
1 AATAAAATACACAATTCAATAAAATA
17069027 CAATAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.63, C:0.09, G:0.00, T:0.28
Consensus pattern (28 bp):
AATAAAATACACAATTCAATAAAATATA
Found at i:17070231 original size:5 final size:5
Alignment explanation
Indices: 17070218--17070247 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
17070208 ACTTTAAACT
17070218 AAATAA AAATA AAATA AAATA AAATA AAAT
1 AAAT-A AAATA AAATA AAATA AAATA AAAT
17070248 TCAAAATCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 20 0.83
6 4 0.17
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:17071876 original size:13 final size:14
Alignment explanation
Indices: 17071845--17071879 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
17071835 TTGAATTTTC
17071845 AAATTTTGAACTCT
1 AAATTTTGAACTCT
*
17071859 AAATTTTGATCT-T
1 AAATTTTGAACTCT
17071872 AAATTTTG
1 AAATTTTG
17071880 GATTTTAAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 9 0.45
14 11 0.55
ACGTcount: A:0.34, C:0.09, G:0.09, T:0.49
Consensus pattern (14 bp):
AAATTTTGAACTCT
Found at i:17075605 original size:45 final size:46
Alignment explanation
Indices: 17075554--17075643 Score: 164
Period size: 46 Copynumber: 2.0 Consensus size: 46
17075544 AAATTGTTAT
17075554 GAAAGGTATAAAGAAATGTC-AACAGTATTCATGTAACAATAATAC
1 GAAAGGTATAAAGAAATGTCAAACAGTATTCATGTAACAATAATAC
*
17075599 GAAAGGTATAAAGAAATTTCAAACAGTATTCATGTAACAATAATA
1 GAAAGGTATAAAGAAATGTCAAACAGTATTCATGTAACAATAATA
17075644 GTTGTTATAA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
45 19 0.44
46 24 0.56
ACGTcount: A:0.50, C:0.10, G:0.14, T:0.26
Consensus pattern (46 bp):
GAAAGGTATAAAGAAATGTCAAACAGTATTCATGTAACAATAATAC
Found at i:17075711 original size:35 final size:35
Alignment explanation
Indices: 17075666--17075732 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
17075656 AATTAAATTG
* *
17075666 GTTATATTAAAAATTTACTGCAATAA-AATTTATT
1 GTTATATTAAAAAATTACTGCAAAAATAATTTATT
*
17075700 GTTATAATTAAAAAATTATTGCAAAAATAATTT
1 GTTAT-ATTAAAAAATTACTGCAAAAATAATTT
17075733 TATCAACGAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 5 0.18
35 18 0.64
36 5 0.18
ACGTcount: A:0.48, C:0.04, G:0.06, T:0.42
Consensus pattern (35 bp):
GTTATATTAAAAAATTACTGCAAAAATAATTTATT
Found at i:17082117 original size:2 final size:2
Alignment explanation
Indices: 17082110--17082159 Score: 82
Period size: 2 Copynumber: 25.0 Consensus size: 2
17082100 TATGACTCAA
* *
17082110 AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AC AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
17082152 AT AT AT AT
1 AT AT AT AT
17082160 GTATTATTTG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:17087430 original size:45 final size:44
Alignment explanation
Indices: 17087341--17087429 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 44
17087331 TTTATTTAAT
17087341 TTTTTTCTCTCTTTCTTCCCGTTTTTTGCGTTTCTCTTCTTCTTC
1 TTTTTTCTCTCTTTCTTCCCGTTTTTT-CGTTTCTCTTCTTCTTC
* *
17087386 TTTTTTCTCTTCTTTCTTTCC-TTTTTT-TTTTCT-TTCTTCTTC
1 TTTTTTCTC-TCTTTCTTCCCGTTTTTTCGTTTCTCTTCTTCTTC
17087428 TT
1 TT
17087430 CCTTATCCGA
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
42 11 0.27
43 5 0.12
45 15 0.37
46 10 0.24
ACGTcount: A:0.00, C:0.26, G:0.03, T:0.71
Consensus pattern (44 bp):
TTTTTTCTCTCTTTCTTCCCGTTTTTTCGTTTCTCTTCTTCTTC
Found at i:17088007 original size:16 final size:16
Alignment explanation
Indices: 17087988--17088019 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
17087978 GGAAGCCGGT
*
17087988 GACCTGCGAACGACGG
1 GACCGGCGAACGACGG
17088004 GACCGGCGAACGACGG
1 GACCGGCGAACGACGG
17088020 CGACGTGACG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.31, G:0.41, T:0.03
Consensus pattern (16 bp):
GACCGGCGAACGACGG
Found at i:17095648 original size:23 final size:23
Alignment explanation
Indices: 17095618--17095663 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
17095608 TGGAATGCTC
17095618 TTATAGATCATTCAAGATTGCCA
1 TTATAGATCATTCAAGATTGCCA
17095641 TTATAGATCATTCAAGATTGCCA
1 TTATAGATCATTCAAGATTGCCA
17095664 ATGCAACATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (23 bp):
TTATAGATCATTCAAGATTGCCA
Found at i:17101040 original size:18 final size:18
Alignment explanation
Indices: 17101017--17101059 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 18
17101007 AATATTGTAT
17101017 TATTATTTTAATAATAAA
1 TATTATTTTAATAATAAA
17101035 TATTA---TAATAATAAA
1 TATTATTTTAATAATAAA
*
17101050 TAATATTTTA
1 TATTATTTTA
17101060 TTATTTTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 6
0.75 0.04 0.21
Matches are distributed among these distances:
15 14 0.67
18 7 0.33
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TATTATTTTAATAATAAA
Found at i:17101084 original size:44 final size:44
Alignment explanation
Indices: 17100989--17101070 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
17100979 TAAATATTTT
* *
17100989 AATATTACACTAATAAATAATATTGTATTATTATTTTAATAATA
1 AATATTATAATAATAAATAATATTGTATTATTATTTTAATAATA
17101033 AATATTATAATAATAAATAATA-T-T-TTATTATTTTAATA
1 AATATTATAATAATAAATAATATTGTATTATTATTTTAATA
17101071 TATATTTTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
41 14 0.39
42 1 0.03
43 1 0.03
44 20 0.56
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.48
Consensus pattern (44 bp):
AATATTATAATAATAAATAATATTGTATTATTATTTTAATAATA
Found at i:17101239 original size:14 final size:14
Alignment explanation
Indices: 17101195--17101240 Score: 51
Period size: 13 Copynumber: 3.3 Consensus size: 14
17101185 TTCTTTATAT
17101195 TAATA-TTTTAATAA
1 TAATATTTTTAAT-A
*
17101209 TAAATATCTTTAA-A
1 T-AATATTTTTAATA
17101223 TAATATTTTTAATA
1 TAATATTTTTAATA
17101237 TAAT
1 TAAT
17101241 TTAATAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
13 10 0.37
14 8 0.30
15 4 0.15
16 5 0.19
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (14 bp):
TAATATTTTTAATA
Found at i:17107064 original size:121 final size:121
Alignment explanation
Indices: 17106850--17107080 Score: 401
Period size: 121 Copynumber: 1.9 Consensus size: 121
17106840 AATATGGATT
*
17106850 TACCTTGTTGTTTTCAAGGAAATATTAGCATGATCATATATTTTAGTTACACTTGGCCATGCATT
1 TACCTTGTTGTTTTCAAGGAAATATTAGCATGATCATATATGTTAGTTACACTTGGCCATGCATT
*
17106915 AGACCCTAAGCCTATCAAAGTGAACAACAAAGGCAAGGTCTATGTACATATATATA
66 AGACCCTAAGCCTATCAAAGTGAACAACAAAAGCAAGGTCTATGTACATATATATA
*
17106971 TACCTTGTTGTTTTCAAGGAAATATTAGCATGATCATATATGTTAGTTACACTTGGCCATGTATT
1 TACCTTGTTGTTTTCAAGGAAATATTAGCATGATCATATATGTTAGTTACACTTGGCCATGCATT
* *
17107036 AGACCCT-AGTTCTATCCAAGTGAACAACAAAAGCAAGGTCTATGT
66 AGACCCTAAG-CCTATCAAAGTGAACAACAAAAGCAAGGTCTATGT
17107081 GTGTGTGTGT
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
120 2 0.02
121 102 0.98
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Consensus pattern (121 bp):
TACCTTGTTGTTTTCAAGGAAATATTAGCATGATCATATATGTTAGTTACACTTGGCCATGCATT
AGACCCTAAGCCTATCAAAGTGAACAACAAAAGCAAGGTCTATGTACATATATATA
Found at i:17107085 original size:2 final size:2
Alignment explanation
Indices: 17107078--17107108 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
17107068 GCAAGGTCTA
17107078 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
17107109 ATATAACATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:17120186 original size:2 final size:2
Alignment explanation
Indices: 17120181--17120209 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
17120171 TATATGTGTG
17120181 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
17120210 CATAGGATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:17122084 original size:12 final size:13
Alignment explanation
Indices: 17122069--17122120 Score: 63
Period size: 12 Copynumber: 4.1 Consensus size: 13
17122059 TATTTTAGCA
17122069 TCTTTTTT-TTTT
1 TCTTTTTTCTTTT
17122081 TCTTTTTTCTTTT
1 TCTTTTTTCTTTT
* *
17122094 T-TTTTTTCTATC
1 TCTTTTTTCTTTT
17122106 TCTTTCTTTCTTTT
1 TCTTT-TTTCTTTT
17122120 T
1 T
17122121 ATTCCTTGTC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
12 18 0.55
13 8 0.24
14 7 0.21
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (13 bp):
TCTTTTTTCTTTT
Found at i:17122949 original size:2 final size:2
Alignment explanation
Indices: 17122942--17122978 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
17122932 AAAATTGTGA
* *
17122942 AT AT AT AT AA AT AT AT AT AT AT AT AT AT AT AG AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
17122979 CACACACACT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (2 bp):
AT
Found at i:17123463 original size:2 final size:2
Alignment explanation
Indices: 17123456--17123485 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
17123446 TAATATTATC
17123456 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
17123486 TGCAAATGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:17124817 original size:26 final size:25
Alignment explanation
Indices: 17124752--17124836 Score: 91
Period size: 26 Copynumber: 3.3 Consensus size: 25
17124742 ACTATATATT
* *
17124752 TTTCACATTTATCTT-TTTAATTTA
1 TTTCAAATTTATCTTATTTCATTTA
* *
17124776 GTTCAAAATTTCTCTTGATTTCATTTA
1 TTTC-AAATTTATCTT-ATTTCATTTA
17124803 TTTCAAATTTATCTTCATTTCATTTA
1 TTTCAAATTTATCTT-ATTTCATTTA
*
17124829 TCTCAAAT
1 TTTCAAAT
17124837 CGATAACTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
24 3 0.06
25 9 0.18
26 27 0.54
27 11 0.22
ACGTcount: A:0.27, C:0.15, G:0.02, T:0.55
Consensus pattern (25 bp):
TTTCAAATTTATCTTATTTCATTTA
Found at i:17125418 original size:71 final size:70
Alignment explanation
Indices: 17125297--17125437 Score: 237
Period size: 71 Copynumber: 2.0 Consensus size: 70
17125287 GCAGGCTAAG
* *
17125297 AAATTTTAAGTCAGAAAAGCTAATGATCGTTTTCTAAATGCAAGGGTCAATCAAGTTGTCTTGGT
1 AAATTTTAAGTCAGAAAAGCTAATGATCGTTTTCTAAACGCAAGGATCAATCAA-TTGTCTTGGT
17125362 TTCACA
65 TTCACA
* *
17125368 AAATTTTAAGTCAGGAAAGCTAATGATTGTTTTCTAAACGCAAGGATCAATCAATTGTCTTGGTT
1 AAATTTTAAGTCAGAAAAGCTAATGATCGTTTTCTAAACGCAAGGATCAATCAATTGTCTTGGTT
17125433 TCACA
66 TCACA
17125438 CACATCAAGG
Statistics
Matches: 66, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
70 16 0.24
71 50 0.76
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (70 bp):
AAATTTTAAGTCAGAAAAGCTAATGATCGTTTTCTAAACGCAAGGATCAATCAATTGTCTTGGTT
TCACA
Found at i:17125560 original size:90 final size:90
Alignment explanation
Indices: 17125368--17125817 Score: 558
Period size: 90 Copynumber: 5.1 Consensus size: 90
17125358 TGGTTTCACA
*
17125368 AAATTTTAAGTCAGGAAAGCTAATGATTGTTTTCTAAACGCAAGGATCAATCAA-TTGTCTTGGT
1 AAATTTTAAGTCAGGAAAGCTAATGATCGTTTTCTAAACGCAAGGATCAATCAAGTTGTCTTGGT
* *
17125432 TTCACACACATCAAGGAAAACTAAG
66 TTCACACACATCAAGGCAGACTAAG
*
17125457 AAATTTTACGTCAGGAAAGCTAATGATCGTTTTCTAAACGCAAGGATCAATCAAGTTGTCTTGGT
1 AAATTTTAAGTCAGGAAAGCTAATGATCGTTTTCTAAACGCAAGGATCAATCAAGTTGTCTTGGT
17125522 TTCACACACATCAAGGCAGACTAAG
66 TTCACACACATCAAGGCAGACTAAG
* *
17125547 AAATTTTAAGTCAGGAAAGCTAATGATCGTTTTATAAACGCAAGGATCAATCAATTTGTCTTGGT
1 AAATTTTAAGTCAGGAAAGCTAATGATCGTTTTCTAAACGCAAGGATCAATCAAGTTGTCTTGGT
*
17125612 TTCACACACATCAAGGTAGACTAAG
66 TTCACACACATCAAGGCAGACTAAG
* * * * * * *
17125637 AAATTTTAAGTGAAG-AA-TTAA--AAC--TATC-AAATGCAAGGATCAATCAAGTGGTCTTGGT
1 AAATTTTAAGTCAGGAAAGCTAATGATCGTTTTCTAAACGCAAGGATCAATCAAGTTGTCTTGGT
* ** *
17125695 TTCACACACGTCAAAACAAAC-AGAG
66 TTCACACACATCAAGGCAGACTA-AG
* * * * * * * *
17125720 AAATTTCAAGTCAGGAAAGCTAAAGATCATTTTCTAAACGCGAGGATCAATGAAGTGGTATTGAT
1 AAATTTTAAGTCAGGAAAGCTAATGATCGTTTTCTAAACGCAAGGATCAATCAAGTTGTCTTGGT
* * * *
17125785 TTTACACACGTCAAAGCAGACCAAG
66 TTCACACACATCAAGGCAGACTAAG
17125810 AAATTTTA
1 AAATTTTA
17125818 GGTGAAGAAT
Statistics
Matches: 314, Mismatches: 37, Indels: 19
0.85 0.10 0.05
Matches are distributed among these distances:
82 1 0.00
83 57 0.18
84 4 0.01
85 3 0.01
86 2 0.01
87 2 0.01
88 3 0.01
89 57 0.18
90 184 0.59
91 1 0.00
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (90 bp):
AAATTTTAAGTCAGGAAAGCTAATGATCGTTTTCTAAACGCAAGGATCAATCAAGTTGTCTTGGT
TTCACACACATCAAGGCAGACTAAG
Found at i:17125725 original size:83 final size:82
Alignment explanation
Indices: 17125586--17125855 Score: 225
Period size: 83 Copynumber: 3.2 Consensus size: 82
17125576 TTTTATAAAC
* * * * * *
17125586 GCAAGGATCAATCAATTTGTCTTGGTTTCACACACATCAAGGTAGACTAAGAAATTTTAAGTGAA
1 GCAAGGATCAATCAAGTGGTCTTGGTTTCACACACGTCAAAGCAAAC-AAGAAATTTTAAGTGAA
17125651 GAATTAAAACTATCAAAT
65 GAATTAAAACTATCAAAT
* * * *
17125669 GCAAGGATCAATCAAGTGGTCTTGGTTTCACACACGTCAAAACAAACAGAGAAATTTCAAGTCAG
1 GCAAGGATCAATCAAGTGGTCTTGGTTTCACACACGTCAAAGCAAACA-AGAAATTTTAAGTGAA
* * *
17125734 GAAAGCTAAAGATCATTTTCTAAAC
65 G-AA-TTAAA-A-C--TATC-AAAT
* * * * * * *
17125759 GCGAGGATCAATGAAGTGGTATTGATTTTACACACGTCAAAGCAGACCAAGAAATTTTAGGTGAA
1 GCAAGGATCAATCAAGTGGTCTTGGTTTCACACACGTCAAAGCA-AACAAGAAATTTTAAGTGAA
* * **
17125824 GAATTAAAGCTACCAGTT
65 GAATTAAAACTATCAAAT
*
17125842 GCCAGGATCAATCA
1 GCAAGGATCAATCA
17125856 GTCTTCTTGC
Statistics
Matches: 145, Mismatches: 33, Indels: 18
0.74 0.17 0.09
Matches are distributed among these distances:
82 1 0.01
83 67 0.46
84 4 0.03
85 4 0.03
86 2 0.01
87 1 0.01
88 4 0.03
89 5 0.03
90 54 0.37
91 3 0.02
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (82 bp):
GCAAGGATCAATCAAGTGGTCTTGGTTTCACACACGTCAAAGCAAACAAGAAATTTTAAGTGAAG
AATTAAAACTATCAAAT
Found at i:17125733 original size:173 final size:172
Alignment explanation
Indices: 17125368--17125855 Score: 564
Period size: 173 Copynumber: 2.8 Consensus size: 172
17125358 TGGTTTCACA
*
17125368 AAATTTTAAGTCAGGAAAGCTAATGATTGTTTTCTAAACGCAAGGATCAATCAATTGTCTTGGTT
1 AAATTTTAAGTCAGGAAAGCTAATGATCGTTTTCTAAACGCAAGGATCAATCAATTGTCTTGGTT
* * * * * * * *
17125433 TCACACACATCAAGGAAAACTAAGAAATTTTACGTCAGGAAAGCTAATGATCGTTTTCTAAACGC
66 TCACACACATCAAGGAAGACTAAGAAATTTTAAGTGAAG-AA-TTAA--AAC--TATC-AAATGC
* ** *
17125498 AAGGATCAATCAAGTTGTCTTGGTTTCACACACATCAAGGCAGACTAAG
124 AAGGATCAATCAAGTGGTCTTGGTTTCACACACATCAAAACAAACTAAG
*
17125547 AAATTTTAAGTCAGGAAAGCTAATGATCGTTTTATAAACGCAAGGATCAATCAATTTGTCTTGGT
1 AAATTTTAAGTCAGGAAAGCTAATGATCGTTTTCTAAACGCAAGGATCAATCAA-TTGTCTTGGT
*
17125612 TTCACACACATCAAGGTAGACTAAGAAATTTTAAGTGAAGAATTAAAACTATCAAATGCAAGGAT
65 TTCACACACATCAAGGAAGACTAAGAAATTTTAAGTGAAGAATTAAAACTATCAAATGCAAGGAT
*
17125677 CAATCAAGTGGTCTTGGTTTCACACACGTCAAAACAAAC-AGAG
130 CAATCAAGTGGTCTTGGTTTCACACACATCAAAACAAACTA-AG
* * * * * * * *
17125720 AAATTTCAAGTCAGGAAAGCTAAAGATCATTTTCTAAACGCGAGGATCAATGAAGTGGTATTGAT
1 AAATTTTAAGTCAGGAAAGCTAATGATCGTTTTCTAAACGCAAGGATCAATCAA-TTGTCTTGGT
* * * * * * * * ** *
17125785 TTTACACACGTCAAAGCAGACCAAGAAATTTTAGGTGAAGAATTAAAGCTACCAGTTGCCAGGAT
65 TTCACACACATCAAGGAAGACTAAGAAATTTTAAGTGAAGAATTAAAACTATCAAATGCAAGGAT
17125850 CAATCA
130 CAATCA
17125856 GTCTTCTTGC
Statistics
Matches: 270, Mismatches: 37, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
172 1 0.00
173 162 0.60
174 3 0.01
176 2 0.01
178 3 0.01
179 54 0.20
180 45 0.17
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.27
Consensus pattern (172 bp):
AAATTTTAAGTCAGGAAAGCTAATGATCGTTTTCTAAACGCAAGGATCAATCAATTGTCTTGGTT
TCACACACATCAAGGAAGACTAAGAAATTTTAAGTGAAGAATTAAAACTATCAAATGCAAGGATC
AATCAAGTGGTCTTGGTTTCACACACATCAAAACAAACTAAG
Found at i:17126047 original size:22 final size:22
Alignment explanation
Indices: 17126019--17126060 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
17126009 TAGTTTTAAA
* *
17126019 TTTTTTTCTTTAAAAGATGTAT
1 TTTTTTTATATAAAAGATGTAT
17126041 TTTTTTTATATAAAAGATGT
1 TTTTTTTATATAAAAGATGT
17126061 CACAACTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (22 bp):
TTTTTTTATATAAAAGATGTAT
Found at i:17127715 original size:17 final size:17
Alignment explanation
Indices: 17127690--17127733 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
17127680 TTAAGTTTAT
*
17127690 TATAATTTTTAAATACA
1 TATACTTTTTAAATACA
17127707 TATACTTTTTAAATACA
1 TATACTTTTTAAATACA
17127724 TATACTTTTT
1 TATACTTTTT
17127734 TTACACTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.52
Consensus pattern (17 bp):
TATACTTTTTAAATACA
Found at i:17128857 original size:19 final size:17
Alignment explanation
Indices: 17128823--17128868 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 17
17128813 CATTTCCCAT
*
17128823 TCTTTTTTATTCTTTTC
1 TCTTTTTTTTTCTTTTC
17128840 ATCTTTTTTTTTCTTTT-
1 -TCTTTTTTTTTCTTTTC
17128857 TCTTTTGTTTTT
1 TCTTTT-TTTTT
17128869 TTCCTTGTCC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 6 0.23
17 5 0.19
18 15 0.58
ACGTcount: A:0.04, C:0.13, G:0.02, T:0.80
Consensus pattern (17 bp):
TCTTTTTTTTTCTTTTC
Found at i:17128881 original size:20 final size:20
Alignment explanation
Indices: 17128844--17128882 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
17128834 CTTTTCATCT
* * *
17128844 TTTTTTTTCTTTTTCTTTTG
1 TTTTTTTCCTTGTCCTTTTG
17128864 TTTTTTTCCTTGTCCTTTT
1 TTTTTTTCCTTGTCCTTTT
17128883 TCATTTTCAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.00, C:0.15, G:0.05, T:0.79
Consensus pattern (20 bp):
TTTTTTTCCTTGTCCTTTTG
Found at i:17131058 original size:8 final size:8
Alignment explanation
Indices: 17131045--17131070 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
17131035 TTTAGTACTA
17131045 AAACTTTT
1 AAACTTTT
17131053 AAACTTTT
1 AAACTTTT
17131061 AAACTTTT
1 AAACTTTT
17131069 AA
1 AA
17131071 TTTTTTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.46
Consensus pattern (8 bp):
AAACTTTT
Found at i:17131091 original size:18 final size:19
Alignment explanation
Indices: 17131065--17131119 Score: 60
Period size: 18 Copynumber: 2.9 Consensus size: 19
17131055 ACTTTTAAAC
*
17131065 TTTTAATTTTTTATT-TTA
1 TTTTAATTTATTATTATTA
*
17131083 TTTTCATTTATTATTATTA
1 TTTTAATTTATTATTATTA
17131102 TTATT-ATATTATTATTAT
1 TT-TTAAT-TTATTATTAT
17131120 GTCTTTTGTC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 13 0.41
19 7 0.22
20 12 0.38
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (19 bp):
TTTTAATTTATTATTATTA
Found at i:17131098 original size:3 final size:3
Alignment explanation
Indices: 17131090--17131119 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
17131080 TTATTTTCAT
17131090 TTA TTA TTA TTA TTA TTA -TA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
17131120 GTCTTTTGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:17133273 original size:15 final size:15
Alignment explanation
Indices: 17133247--17133493 Score: 104
Period size: 15 Copynumber: 17.1 Consensus size: 15
17133237 ATAATATTTT
17133247 TATTATATAAATATTA
1 TATTA-ATAAATATTA
17133263 TATTAATAAATA-T-
1 TATTAATAAATATTA
**
17133276 TATT-ATATGTATTA
1 TATTAATAAATATTA
*
17133290 TATAAAT-AATATTA
1 TATTAATAAATATTA
*
17133304 TATTAATTAATA--A
1 TATTAATAAATATTA
*
17133317 -A-TAAT--ATGTTA
1 TATTAATAAATATTA
*
17133328 CATTAAT-AATA-TA
1 TATTAATAAATATTA
17133341 TTATTAATATAATA-TA
1 -TATTAATA-AATATTA
* * *
17133357 TTATTTATTAATATAA
1 -TATTAATAAATATTA
17133373 TATTAACT-AATA-TA
1 TATTAA-TAAATATTA
*
17133387 GTATTTATAAATAATATA
1 -TATTAATAAAT-AT-TA
17133405 TATTAATAAATA--A
1 TATTAATAAATATTA
17133418 TATT-AT-AATA-TA
1 TATTAATAAATATTA
** *
17133430 TAAAAATAATTTATTA
1 TATTAATAA-ATATTA
*
17133446 -ATAAATAAATAAAATTA
1 TATTAATAAAT---ATTA
*
17133463 TATTAATAAATAATA
1 TATTAATAAATATTA
17133478 TATTAATAAATATTA
1 TATTAATAAATATTA
17133493 T
1 T
17133494 TATATTATTA
Statistics
Matches: 179, Mismatches: 24, Indels: 57
0.69 0.09 0.22
Matches are distributed among these distances:
9 2 0.01
11 9 0.05
12 12 0.07
13 19 0.11
14 27 0.15
15 61 0.34
16 24 0.13
17 14 0.08
18 11 0.06
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (15 bp):
TATTAATAAATATTA
Found at i:17133294 original size:23 final size:21
Alignment explanation
Indices: 17133220--17133323 Score: 96
Period size: 22 Copynumber: 5.1 Consensus size: 21
17133210 TGACACTACA
*
17133220 ATTATTTTATTAATAAAATAAT
1 ATTATATTATTAAT-AAATAAT
*
17133242 ATT-T-TTATT-ATATA-AAT
1 ATTATATTATTAATAAATAAT
*
17133259 A-T-TA-TATTAATAAATATT
1 ATTATATTATTAATAAATAAT
17133277 ATTATATGTATTATATAAATAAT
1 ATTATAT-TATTA-ATAAATAAT
17133300 ATTATATTAATTAATAAATAAT
1 ATTATATT-ATTAATAAATAAT
17133322 AT
1 AT
17133324 GTTACATTAA
Statistics
Matches: 69, Mismatches: 4, Indels: 18
0.76 0.04 0.20
Matches are distributed among these distances:
16 6 0.09
17 8 0.12
18 5 0.07
19 3 0.04
20 7 0.10
21 1 0.01
22 20 0.29
23 19 0.28
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (21 bp):
ATTATATTATTAATAAATAAT
Found at i:17133366 original size:20 final size:20
Alignment explanation
Indices: 17133220--17133375 Score: 102
Period size: 20 Copynumber: 8.0 Consensus size: 20
17133210 TGACACTACA
*
17133220 ATTATTTTATTAATAAAATAAT
1 ATTA-TTTATTAATATAAT-AT
17133242 ATT-TTTATT-ATATAA-AT
1 ATTATTTATTAATATAATAT
17133259 ATTA--TATTAATA-AATATT
1 ATTATTTATTAATATAATA-T
17133277 ATTATATGTATT-ATATAA-AT
1 ATTAT-T-TATTAATATAATAT
* *
17133297 AATATTATATTAAT-TAATAA
1 ATTATT-TATTAATATAATAT
* * *
17133317 ATAATATGTTACAT-TAATA-
1 ATTATTTATTA-ATATAATAT
17133336 A-TATATTATTAATATAATAT
1 ATTAT-TTATTAATATAATAT
17133356 ATTATTTATTAATATAATAT
1 ATTATTTATTAATATAATAT
17133376 TAACTAATAT
Statistics
Matches: 107, Mismatches: 11, Indels: 34
0.70 0.07 0.22
Matches are distributed among these distances:
16 6 0.06
17 9 0.08
18 9 0.08
19 27 0.25
20 40 0.37
21 7 0.07
22 9 0.08
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (20 bp):
ATTATTTATTAATATAATAT
Found at i:17133431 original size:25 final size:25
Alignment explanation
Indices: 17133397--17133497 Score: 81
Period size: 21 Copynumber: 4.1 Consensus size: 25
17133387 GTATTTATAA
17133397 ATAATATATATTAATAAATAATATT
1 ATAATATATATTAATAAATAATATT
17133422 AT-A-ATATA-TAA-AAATAAT-TT
1 ATAATATATATTAATAAATAATATT
* *
17133442 ATTAATA-A-ATAAATAAAATTATATT
1 A-TAATATATATTAAT-AAATAATATT
*
17133467 AATAAATAATATATTAATAAATATTATT
1 -AT-AAT-ATATATTAATAAATAATATT
17133495 ATA
1 ATA
17133498 TTATTAATAA
Statistics
Matches: 59, Mismatches: 5, Indels: 23
0.68 0.06 0.26
Matches are distributed among these distances:
20 3 0.05
21 9 0.15
22 7 0.12
23 6 0.10
24 7 0.12
25 5 0.08
26 5 0.08
27 3 0.05
28 9 0.15
29 5 0.08
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (25 bp):
ATAATATATATTAATAAATAATATT
Found at i:17135514 original size:120 final size:115
Alignment explanation
Indices: 17135339--17135608 Score: 328
Period size: 120 Copynumber: 2.3 Consensus size: 115
17135329 CTAATTATTC
* *
17135339 CACCATTTAGGCCTATTTAGAAATTTTCTCTTTTTTTTTTAATTTTTTTGTTGGATTTCTAAATT
1 CACCATTTAGGCATATTTAGAAATTTT-T-TTTTTTTATTAA-TTTTTTGTTGGATTTCTAAATT
* * **
17135404 TTTCACCATTCGAGTTAATTTAGAAATATTTTCTTTTTTTTTTAATTTTTAAAATTTTT
63 TTTCACCATTCGAGTCAATTTA-AAA-A---TATTTTTTTTGAAATTTTTAAAA-TTTT
* * *
17135463 CACTATTTGGGCGTATTTAGAAATTTTATTTTTTTTATT-A-TTTTTGTTGGATTTCTAAATTTT
1 CACCATTTAGGCATATTTAGAAATTTT-TTTTTTTTATTAATTTTTTGTTGGATTTCTAAATTTT
* *
17135526 TCACCATTTGGGTCAATTTAAAAATATTTTTTTTGAAATTTTTAAAATTTT
65 TCACCATTCGAGTCAATTTAAAAATATTTTTTTTGAAATTTTTAAAATTTT
*
17135577 CACCATTTTGGCATATTTAGAAATTTTTTTTT
1 CACCATTTAGGCATATTTAGAAATTTTTTTTT
17135609 GTTTTTGCAA
Statistics
Matches: 132, Mismatches: 14, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
113 5 0.04
114 28 0.21
115 20 0.15
118 1 0.01
119 3 0.02
120 40 0.30
122 1 0.01
123 9 0.07
124 25 0.19
ACGTcount: A:0.26, C:0.09, G:0.09, T:0.56
Consensus pattern (115 bp):
CACCATTTAGGCATATTTAGAAATTTTTTTTTTTTATTAATTTTTTGTTGGATTTCTAAATTTTT
CACCATTCGAGTCAATTTAAAAATATTTTTTTTGAAATTTTTAAAATTTT
Found at i:17135579 original size:50 final size:49
Alignment explanation
Indices: 17135513--17135609 Score: 133
Period size: 50 Copynumber: 2.0 Consensus size: 49
17135503 TTTTTGTTGG
*
17135513 ATTTCTAAATTTTTCACCATTTGGGTCA-ATTTAAAAATATTTTTTTTGAA
1 ATTTCTAAAATTTTCACCATTTGGG-CATATTTAAAAAT-TTTTTTTTGAA
* * *
17135563 ATTTTTAAAATTTTCACCATTTTGGCATATTTAGAAATTTTTTTTTG
1 ATTTCTAAAATTTTCACCATTTGGGCATATTTAAAAATTTTTTTTTG
17135610 TTTTTGCAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
49 11 0.26
50 31 0.74
ACGTcount: A:0.30, C:0.09, G:0.08, T:0.53
Consensus pattern (49 bp):
ATTTCTAAAATTTTCACCATTTGGGCATATTTAAAAATTTTTTTTTGAA
Found at i:17149264 original size:53 final size:52
Alignment explanation
Indices: 17149153--17149307 Score: 177
Period size: 52 Copynumber: 3.0 Consensus size: 52
17149143 TATAACCATA
* * * * ** *
17149153 CAAACTTGCCCATTAAGAATCCCTCTCCTCTTAGAATTCTTCTCCTATAAGT
1 CAAACTTGCCTATTAAGAATTCCTTTCCTCTTAGAATTCTTCTCTTGCAAAT
* *
17149205 CAAACTTGCCTATTAAGAATTCCTTTCCCTTTTGGAATTCTTCTCTTGCAAAT
1 CAAACTTGCCTATTAAGAATTCCTTT-CCTCTTAGAATTCTTCTCTTGCAAAT
* * *
17149258 CAAACTTACCTATTAAGAA-TCCTCTTTCTCTTAGAATTCTTCTTTTGCAA
1 CAAACTTGCCTATTAAGAATTCCT-TTCCTCTTAGAATTCTTCTCTTGCAA
17149308 GTCTTCTTGT
Statistics
Matches: 87, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
52 47 0.54
53 40 0.46
ACGTcount: A:0.26, C:0.26, G:0.08, T:0.39
Consensus pattern (52 bp):
CAAACTTGCCTATTAAGAATTCCTTTCCTCTTAGAATTCTTCTCTTGCAAAT
Found at i:17151903 original size:8 final size:8
Alignment explanation
Indices: 17151890--17151919 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
17151880 AATATAAAAT
17151890 ATAATATA
1 ATAATATA
17151898 ATAATATA
1 ATAATATA
17151906 ATAATATA
1 ATAATATA
17151914 ATAATA
1 ATAATA
17151920 CTACTTTAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
ATAATATA
Found at i:17151916 original size:13 final size:12
Alignment explanation
Indices: 17151875--17151908 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
17151865 ATTTGCAGAT
17151875 AAATA-AATATA
1 AAATATAATATA
17151886 AAATATAATATA
1 AAATATAATATA
17151898 ATAATATAATA
1 A-AATATAATA
17151909 ATATAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 5 0.24
12 7 0.33
13 9 0.43
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAATATAATATA
Found at i:17158100 original size:6 final size:6
Alignment explanation
Indices: 17158089--17158114 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
17158079 TCATTCTTTT
17158089 ATATAA ATATAA ATATAA ATATAA AT
1 ATATAA ATATAA ATATAA ATATAA AT
17158115 TATATATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (6 bp):
ATATAA
Found at i:17158678 original size:26 final size:26
Alignment explanation
Indices: 17158613--17158723 Score: 163
Period size: 26 Copynumber: 4.3 Consensus size: 26
17158603 ACTATATATT
* *
17158613 TTTCACATTTATCTT--TTTAATTTA
1 TTTCAAATTTATCTTGATTTCATTTA
* *
17158637 GTTCAAAATTTCTCTTGATTTCATTTA
1 TTTC-AAATTTATCTTGATTTCATTTA
17158664 TTTCAAATTTATCTTGATTTCATTTA
1 TTTCAAATTTATCTTGATTTCATTTA
17158690 TTTCAAATTTATCTTGATTTCATTTA
1 TTTCAAATTTATCTTGATTTCATTTA
17158716 TTTCAAAT
1 TTTCAAAT
17158724 CGATAACTTT
Statistics
Matches: 78, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
24 3 0.04
25 9 0.12
26 55 0.71
27 11 0.14
ACGTcount: A:0.27, C:0.13, G:0.04, T:0.57
Consensus pattern (26 bp):
TTTCAAATTTATCTTGATTTCATTTA
Found at i:17159329 original size:116 final size:116
Alignment explanation
Indices: 17159125--17159355 Score: 462
Period size: 116 Copynumber: 2.0 Consensus size: 116
17159115 ACTCTAAGTG
17159125 CTAGGCCTTGAATCAATCCAAGTCATCTTGCTTTCGACAAACATCAAAGCAGGCTAAGAAATTTT
1 CTAGGCCTTGAATCAATCCAAGTCATCTTGCTTTCGACAAACATCAAAGCAGGCTAAGAAATTTT
17159190 AAGTCAGAAAAGCTAATGATCGTTTTCTAAATGCAAGGATCAATCAAGTTT
66 AAGTCAGAAAAGCTAATGATCGTTTTCTAAATGCAAGGATCAATCAAGTTT
17159241 CTAGGCCTTGAATCAATCCAAGTCATCTTGCTTTCGACAAACATCAAAGCAGGCTAAGAAATTTT
1 CTAGGCCTTGAATCAATCCAAGTCATCTTGCTTTCGACAAACATCAAAGCAGGCTAAGAAATTTT
17159306 AAGTCAGAAAAGCTAATGATCGTTTTCTAAATGCAAGGATCAATCAAGTT
66 AAGTCAGAAAAGCTAATGATCGTTTTCTAAATGCAAGGATCAATCAAGTT
17159356 GTCTTGGTTT
Statistics
Matches: 115, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
116 115 1.00
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.28
Consensus pattern (116 bp):
CTAGGCCTTGAATCAATCCAAGTCATCTTGCTTTCGACAAACATCAAAGCAGGCTAAGAAATTTT
AAGTCAGAAAAGCTAATGATCGTTTTCTAAATGCAAGGATCAATCAAGTTT
Found at i:17159415 original size:71 final size:70
Alignment explanation
Indices: 17159299--17159439 Score: 255
Period size: 71 Copynumber: 2.0 Consensus size: 70
17159289 GCAGGCTAAG
17159299 AAATTTTAAGTCAGAAAAGCTAATGATCGTTTTCTAAATGCAAGGATCAATCAAGTTGTCTTGGT
1 AAATTTTAAGTCAGAAAAGCTAATGATCGTTTTCTAAATGCAAGGATCAATCAA-TTGTCTTGGT
17159364 TTCACA
65 TTCACA
* *
17159370 AAATTTTAAGTCAGGAAAGCTAATGATTGTTTTCTAAATGCAAGGATCAATCAATTGTCTTGGTT
1 AAATTTTAAGTCAGAAAAGCTAATGATCGTTTTCTAAATGCAAGGATCAATCAATTGTCTTGGTT
17159435 TCACA
66 TCACA
17159440 CACATCAAGG
Statistics
Matches: 68, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
70 16 0.24
71 52 0.76
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (70 bp):
AAATTTTAAGTCAGAAAAGCTAATGATCGTTTTCTAAATGCAAGGATCAATCAATTGTCTTGGTT
TCACA
Found at i:17159562 original size:90 final size:90
Alignment explanation
Indices: 17159370--17159819 Score: 524
Period size: 90 Copynumber: 5.1 Consensus size: 90
17159360 TGGTTTCACA
**
17159370 AAATTTTAAGTCAGGAAAGCTAATGATTGTTTTCTAAATGCAAGGATCAATCAA-TTGTCTTGGT
1 AAATTTTAAGTCAGGAAAGCTAATGATCATTTTCTAAATGCAAGGATCAATCAAGTTGTCTTGGT
*
17159434 TTCACACACATCAAGGCAAACTAAG
66 TTCACACACATCAAGGCAGACTAAG
* * *
17159459 AAATTTTACGTCAGGAAAGCTAATGATCATTTTCTAAACGCAAGGATCAATCAAGTTGTCTTTGT
1 AAATTTTAAGTCAGGAAAGCTAATGATCATTTTCTAAATGCAAGGATCAATCAAGTTGTCTTGGT
17159524 TTCACACACATCAAGGCAGACTAAG
66 TTCACACACATCAAGGCAGACTAAG
* * *
17159549 AAATTTTAAGTCAGGAAAGCTAATGATCGTTTTATAAACGCAAGGATCAATCATA-TTGTCTTGG
1 AAATTTTAAGTCAGGAAAGCTAATGATCATTTTCTAAATGCAAGGATCAATCA-AGTTGTCTTGG
*
17159613 TTTCACACACATCAAGGTAGACTAAG
65 TTTCACACACATCAAGGCAGACTAAG
* * ** * * *
17159639 AAATTTT-A--CATG-AAG--AATTAAAACTATC-AAATGCAAGGATCAATCAAGTGGTCTTGGT
1 AAATTTTAAGTCAGGAAAGCTAATGATCATTTTCTAAATGCAAGGATCAATCAAGTTGTCTTGGT
* ** *
17159697 TTCACACACGTCAAAACAAAC-AGAG
66 TTCACACACATCAAGGCAGACTA-AG
* * * * * *
17159722 AAATTTCAAGTCAGGAAAGCTAATGATCATTTTCTAAATGCGAGGATCAATGAAGTGGTATTGAT
1 AAATTTTAAGTCAGGAAAGCTAATGATCATTTTCTAAATGCAAGGATCAATCAAGTTGTCTTGGT
* * * * *
17159787 TTTACACACGTAAAAGCAGACCAAG
66 TTCACACACATCAAGGCAGACTAAG
17159812 AAATTTTA
1 AAATTTTA
17159820 GGTGAAGAAT
Statistics
Matches: 307, Mismatches: 42, Indels: 23
0.83 0.11 0.06
Matches are distributed among these distances:
82 2 0.01
83 50 0.16
84 7 0.02
86 6 0.02
87 6 0.02
89 59 0.19
90 175 0.57
91 2 0.01
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.28
Consensus pattern (90 bp):
AAATTTTAAGTCAGGAAAGCTAATGATCATTTTCTAAATGCAAGGATCAATCAAGTTGTCTTGGT
TTCACACACATCAAGGCAGACTAAG
Found at i:17159735 original size:173 final size:172
Alignment explanation
Indices: 17159370--17159857 Score: 546
Period size: 173 Copynumber: 2.8 Consensus size: 172
17159360 TGGTTTCACA
*
17159370 AAATTTTAAGTCAGGAAAGCTAATGATTGTTTTCTAAATGCAAGGATCAATCAATTGTCTTGGTT
1 AAATTTTAAGTCAGGAAAGCTAATGATCGTTTTCTAAATGCAAGGATCAATCAATTGTCTTGGTT
* * * ** * * *
17159435 TCACACACATCAAGGCAAACTAAGAAATTTTACGTCAGGAAAGCTAATGATCATTTTCTAAACGC
66 TCACACACATCAAGGCAGACTAAGAAATTTTA---CATG-AAG--AATTAAAACTATC-AAATGC
* * ** *
17159500 AAGGATCAATCAAGTTGTCTTTGTTTCACACACATCAAGGCAGACTAAG
124 AAGGATCAATCAAGTGGTCTTGGTTTCACACACATCAAAACAAACTAAG
* *
17159549 AAATTTTAAGTCAGGAAAGCTAATGATCGTTTTATAAACGCAAGGATCAATCATATTGTCTTGGT
1 AAATTTTAAGTCAGGAAAGCTAATGATCGTTTTCTAAATGCAAGGATCAATCA-ATTGTCTTGGT
*
17159614 TTCACACACATCAAGGTAGACTAAGAAATTTTACATGAAGAATTAAAACTATCAAATGCAAGGAT
65 TTCACACACATCAAGGCAGACTAAGAAATTTTACATGAAGAATTAAAACTATCAAATGCAAGGAT
*
17159679 CAATCAAGTGGTCTTGGTTTCACACACGTCAAAACAAAC-AGAG
130 CAATCAAGTGGTCTTGGTTTCACACACATCAAAACAAACTA-AG
* * * * * * *
17159722 AAATTTCAAGTCAGGAAAGCTAATGATCATTTTCTAAATGCGAGGATCAATGAAGTGGTATTGAT
1 AAATTTTAAGTCAGGAAAGCTAATGATCGTTTTCTAAATGCAAGGATCAATCAA-TTGTCTTGGT
* * * * * ** * * ** *
17159787 TTTACACACGTAAAAGCAGACCAAGAAATTTTAGGTGAAGAATTAAAGCTACCAGTTGCCAGGAT
65 TTCACACACATCAAGGCAGACTAAGAAATTTTACATGAAGAATTAAAACTATCAAATGCAAGGAT
17159852 CAATCA
130 CAATCA
17159858 GTCTTCTTGC
Statistics
Matches: 266, Mismatches: 40, Indels: 12
0.84 0.13 0.04
Matches are distributed among these distances:
172 2 0.01
173 158 0.59
174 8 0.03
176 3 0.01
177 3 0.01
179 50 0.19
180 42 0.16
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (172 bp):
AAATTTTAAGTCAGGAAAGCTAATGATCGTTTTCTAAATGCAAGGATCAATCAATTGTCTTGGTT
TCACACACATCAAGGCAGACTAAGAAATTTTACATGAAGAATTAAAACTATCAAATGCAAGGATC
AATCAAGTGGTCTTGGTTTCACACACATCAAAACAAACTAAG
Found at i:17160525 original size:19 final size:19
Alignment explanation
Indices: 17160503--17160543 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
17160493 ATTTTATCAT
17160503 AATTAATATTTATTATAAA
1 AATTAATATTTATTATAAA
* * *
17160522 AATTATTTTTTATTTTAAA
1 AATTAATATTTATTATAAA
17160541 AAT
1 AAT
17160544 AAAATATAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
AATTAATATTTATTATAAA
Found at i:17160825 original size:5 final size:6
Alignment explanation
Indices: 17160811--17160900 Score: 58
Period size: 6 Copynumber: 14.3 Consensus size: 6
17160801 CCCAATTGGC
* * * * *
17160811 TTTTAT TTTTAT TTTTAT TTTTAT TATT-T GTCTAT TTATTAAT ATATATT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT-TT-AT TTTTA-T
*
17160861 TTTTAT TTTT-T TATTAT TTATCTAT TTTTAT TATTTAT TT
1 TTTTAT TTTTAT TTTTAT TT-T-TAT TTTTAT T-TTTAT TT
17160901 ATTCTATTAT
Statistics
Matches: 64, Mismatches: 12, Indels: 16
0.70 0.13 0.17
Matches are distributed among these distances:
5 6 0.09
6 36 0.56
7 14 0.22
8 8 0.12
ACGTcount: A:0.22, C:0.02, G:0.01, T:0.74
Consensus pattern (6 bp):
TTTTAT
Found at i:17160839 original size:21 final size:22
Alignment explanation
Indices: 17160813--17160900 Score: 65
Period size: 23 Copynumber: 3.9 Consensus size: 22
17160803 CAATTGGCTT
17160813 TTATTTT-TATTTTTATTTTTA
1 TTATTTTATATTTTTATTTTTA
* * *
17160834 TTATTTGTCTATTTATTAATATATA
1 TTATTT-TATATTT-TT-ATTTTTA
*
17160859 TT-TTTTATTTTTTTATTATTTA
1 TTATTTTATATTTTTATT-TTTA
17160881 TCTATTTT-TATTATTTATTT
1 T-TATTTTATATT-TTTATTT
17160901 ATTCTATTAT
Statistics
Matches: 52, Mismatches: 7, Indels: 14
0.71 0.10 0.19
Matches are distributed among these distances:
21 8 0.15
22 7 0.13
23 15 0.29
24 15 0.29
25 7 0.13
ACGTcount: A:0.23, C:0.02, G:0.01, T:0.74
Consensus pattern (22 bp):
TTATTTTATATTTTTATTTTTA
Found at i:17160873 original size:25 final size:28
Alignment explanation
Indices: 17160843--17160903 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
17160833 ATTATTTGTC
17160843 TATTTATTA-ATATATA-TTTT-TTATT
1 TATTTATTATATATATATTTTTATTATT
* * *
17160868 TTTTTATTATTTATCTATTTTTATTATT
1 TATTTATTATATATATATTTTTATTATT
17160896 TATTTATT
1 TATTTATT
17160904 CTATTATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 8 0.28
26 5 0.17
27 4 0.14
28 12 0.41
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (28 bp):
TATTTATTATATATATATTTTTATTATT
Found at i:17160898 original size:4 final size:4
Alignment explanation
Indices: 17160824--17160924 Score: 55
Period size: 4 Copynumber: 24.8 Consensus size: 4
17160814 TATTTTTATT
* * * * *
17160824 TTTA TTTT TATTA TTTG TCTA TTTA TTAATA TATA TTT- TTTA TTTT TTTA
1 TTTA TTTA T-TTA TTTA TTTA TTTA TT--TA TTTA TTTA TTTA TTTA TTTA
* * * *
17160874 -TTA TTTA TCTA TTTT TATTA TTTA TTTA TTCTA -TTA TTTA TCTA TTAA
1 TTTA TTTA TTTA TTTA T-TTA TTTA TTTA TT-TA TTTA TTTA TTTA TTTA
17160922 TTT
1 TTT
17160925 TTTTTTGACA
Statistics
Matches: 71, Mismatches: 18, Indels: 16
0.68 0.17 0.15
Matches are distributed among these distances:
3 8 0.11
4 52 0.73
5 8 0.11
6 3 0.04
ACGTcount: A:0.25, C:0.04, G:0.01, T:0.70
Consensus pattern (4 bp):
TTTA
Found at i:17160910 original size:8 final size:7
Alignment explanation
Indices: 17160812--17160919 Score: 69
Period size: 8 Copynumber: 14.3 Consensus size: 7
17160802 CCAATTGGCT
17160812 TTTATT-
1 TTTATTA
17160818 TTTATT-
1 TTTATTA
17160824 TTTATT-
1 TTTATTA
17160830 TTTATTA
1 TTTATTA
*
17160837 TTTGTCTA
1 TTTAT-TA
17160845 TTTATTAA
1 TTTATT-A
*
17160853 TATATATTT
1 T-T-TATTA
*
17160862 TTTATTTT
1 TTTA-TTA
17160870 TTTATTA
1 TTTATTA
17160877 TTTATCTA
1 TTTAT-TA
17160885 TTTTTATTA
1 --TTTATTA
17160894 TTTATTTA
1 TTTA-TTA
17160902 TTCTATTA
1 TT-TATTA
17160910 TTTATCTA
1 TTTAT-TA
17160918 TT
1 TT
17160920 AATTTTTTTT
Statistics
Matches: 86, Mismatches: 4, Indels: 22
0.77 0.04 0.20
Matches are distributed among these distances:
6 18 0.21
7 21 0.24
8 32 0.37
9 6 0.07
10 9 0.10
ACGTcount: A:0.23, C:0.04, G:0.01, T:0.72
Consensus pattern (7 bp):
TTTATTA
Found at i:17160914 original size:33 final size:30
Alignment explanation
Indices: 17160813--17160919 Score: 101
Period size: 32 Copynumber: 3.4 Consensus size: 30
17160803 CAATTGGCTT
*
17160813 TTATTT-TTATTTTTATTTTTA-TTATTTG
1 TTATTTATTATTTTTATTTTTATTTATTTA
* * *
17160841 TCTATTTATTAATATATATTTTTTATTTTTTTA
1 T-TATTTATT-ATTTTTA-TTTTTATTTATTTA
17160874 TTATTTATCTATTTTTATTATTTATTTATTCTA
1 TTATTTAT-TATTTTTATT-TTTATTTATT-TA
17160907 TTATTTATCTATT
1 TTATTTAT-TATT
17160920 AATTTTTTTT
Statistics
Matches: 64, Mismatches: 7, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
28 1 0.02
29 5 0.08
30 2 0.03
31 7 0.11
32 27 0.42
33 22 0.34
ACGTcount: A:0.23, C:0.04, G:0.01, T:0.72
Consensus pattern (30 bp):
TTATTTATTATTTTTATTTTTATTTATTTA
Found at i:17161675 original size:3 final size:3
Alignment explanation
Indices: 17161664--17161706 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
17161654 TTTTTTCATT
17161664 TTA TT- TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
17161707 TATTGATTAG
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 37 0.95
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:17161774 original size:17 final size:17
Alignment explanation
Indices: 17161738--17161772 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
17161728 TTGGTATTCC
*
17161738 TTATTTTATTTTTATTT
1 TTATATTATTTTTATTT
17161755 TTATATTA-TTTTATTT
1 TTATATTATTTTTATTT
17161771 TT
1 TT
17161773 TAATGATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (17 bp):
TTATATTATTTTTATTT
Found at i:17161890 original size:59 final size:60
Alignment explanation
Indices: 17161786--17161912 Score: 159
Period size: 59 Copynumber: 2.1 Consensus size: 60
17161776 TGATTTTCTT
* *
17161786 AAAATAAAATTCTAAAAAAATATATTTTTGAGAAAAAGTTAAAAGTATCAACTTTCCTTG
1 AAAATAAAATTCTAAAAAAATACATTTTTAAGAAAAAGTTAAAAGTATCAACTTTCCTTG
** * * *
17161846 AAAATAATTTTCTAAAAAAA-ACATTTTTAA-AGAAAAGTTGAAAGTATCAATTTTTCTTG
1 AAAATAAAATTCTAAAAAAATACATTTTTAAGA-AAAAGTTAAAAGTATCAACTTTCCTTG
*
17161905 AAATTAAA
1 AAAATAAA
17161913 GTTTCAGAAA
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
58 1 0.02
59 38 0.67
60 18 0.32
ACGTcount: A:0.50, C:0.07, G:0.08, T:0.35
Consensus pattern (60 bp):
AAAATAAAATTCTAAAAAAATACATTTTTAAGAAAAAGTTAAAAGTATCAACTTTCCTTG
Found at i:17161931 original size:59 final size:59
Alignment explanation
Indices: 17161786--17161931 Score: 145
Period size: 59 Copynumber: 2.5 Consensus size: 59
17161776 TGATTTTCTT
** * *
17161786 AAAATAAAATTCTAAAAAAATATATTTTTGAGAAAAAGTTAAAAGTATCAACTTTCCTTG
1 AAAATAAGTTTCT-AAAAAATACATTTTTAAGAAAAAGTTAAAAGTATCAACTTTCCTTG
* * * * *
17161846 AAAATAATTTTCTAAAAAAAACATTTTTAA-AGAAAAGTTGAAAGTATCAATTTTTCTTG
1 AAAATAAGTTTCTAAAAAATACATTTTTAAGA-AAAAGTTAAAAGTATCAACTTTCCTTG
*
17161905 AAATTAAAGTTTC-AGAAAAATA-ATTTT
1 AAAAT-AAGTTTCTA-AAAAATACATTTT
17161932 GGGTAAAGTT
Statistics
Matches: 72, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
58 1 0.01
59 48 0.67
60 23 0.32
ACGTcount: A:0.49, C:0.07, G:0.08, T:0.36
Consensus pattern (59 bp):
AAAATAAGTTTCTAAAAAATACATTTTTAAGAAAAAGTTAAAAGTATCAACTTTCCTTG
Found at i:17167754 original size:3 final size:3
Alignment explanation
Indices: 17167730--17167773 Score: 58
Period size: 3 Copynumber: 15.3 Consensus size: 3
17167720 TTTTAATTTT
17167730 TTA TT- TTA TT- TTCA TT- TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
17167773 T
1 T
17167774 GTCTTTTGTC
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
2 6 0.16
3 29 0.78
4 2 0.05
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:17168621 original size:19 final size:18
Alignment explanation
Indices: 17168598--17168641 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 18
17168588 TAAGATTTCC
17168598 TTTTTTTCATTTTATTTT
1 TTTTTTTCATTTTATTTT
* *
17168616 TGTTTTATGATTTTATTTT
1 T-TTTTTTCATTTTATTTT
17168635 TTTTTTT
1 TTTTTTT
17168642 GTTGTTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.11, C:0.02, G:0.05, T:0.82
Consensus pattern (18 bp):
TTTTTTTCATTTTATTTT
Found at i:17169873 original size:15 final size:15
Alignment explanation
Indices: 17169847--17170093 Score: 113
Period size: 15 Copynumber: 17.1 Consensus size: 15
17169837 ATAATATTTT
17169847 TATTATATAAATATTA
1 TATTA-ATAAATATTA
17169863 TATTAATAAATA-T-
1 TATTAATAAATATTA
**
17169876 TATT-ATATGTATTA
1 TATTAATAAATATTA
*
17169890 TATAAAT-AATATTA
1 TATTAATAAATATTA
*
17169904 TATTAATTAATA--A
1 TATTAATAAATATTA
*
17169917 -A-TAAT--ATGTTA
1 TATTAATAAATATTA
*
17169928 CATTAATAATATATTA
1 TATTAATAA-ATATTA
*
17169944 T-TAATATAATATATTA
1 TATTA-ATAA-ATATTA
17169960 TTTATTAATATAATATTA
1 --TATTAATA-AATATTA
*
17169978 -ATTAATATAGTATT-
1 TATTAATA-AATATTA
*
17169992 TATAAAT-AATA-TA
1 TATTAATAAATATTA
17170005 TATTAATAAATA--A
1 TATTAATAAATATTA
17170018 TATT-AT-AATA-TA
1 TATTAATAAATATTA
** *
17170030 TAAAAATAATTTATTA
1 TATTAATAA-ATATTA
*
17170046 -ATAAATAAATAAAATTA
1 TATTAATAAAT---ATTA
*
17170063 TATTAATAAATAATA
1 TATTAATAAATATTA
17170078 TATTAATAAATATTA
1 TATTAATAAATATTA
17170093 T
1 T
17170094 TATATTATTA
Statistics
Matches: 180, Mismatches: 23, Indels: 57
0.69 0.09 0.22
Matches are distributed among these distances:
9 2 0.01
11 9 0.05
12 13 0.07
13 26 0.14
14 21 0.12
15 60 0.33
16 23 0.13
17 4 0.02
18 19 0.11
19 3 0.02
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (15 bp):
TATTAATAAATATTA
Found at i:17169894 original size:23 final size:21
Alignment explanation
Indices: 17169820--17169923 Score: 96
Period size: 22 Copynumber: 5.1 Consensus size: 21
17169810 TGACGCTACA
*
17169820 ATTATTTTATTAATAAAATAAT
1 ATTATATTATTAAT-AAATAAT
*
17169842 ATT-T-TTATT-ATATA-AAT
1 ATTATATTATTAATAAATAAT
*
17169859 A-T-TA-TATTAATAAATATT
1 ATTATATTATTAATAAATAAT
17169877 ATTATATGTATTATATAAATAAT
1 ATTATAT-TATTA-ATAAATAAT
17169900 ATTATATTAATTAATAAATAAT
1 ATTATATT-ATTAATAAATAAT
17169922 AT
1 AT
17169924 GTTACATTAA
Statistics
Matches: 69, Mismatches: 4, Indels: 18
0.76 0.04 0.20
Matches are distributed among these distances:
16 6 0.09
17 8 0.12
18 5 0.07
19 3 0.04
20 7 0.10
21 1 0.01
22 20 0.29
23 19 0.28
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (21 bp):
ATTATATTATTAATAAATAAT
Found at i:17169910 original size:11 final size:11
Alignment explanation
Indices: 17169847--17169979 Score: 55
Period size: 11 Copynumber: 12.1 Consensus size: 11
17169837 ATAATATTTT
*
17169847 TATTATATAAA
1 TATTATATTAA
17169858 TATTATATTAA
1 TATTATATTAA
* *
17169869 TA-AATATTAT
1 TATTATATTAA
*
17169879 TATATGTATT-A
1 TAT-TATATTAA
*
17169890 TA-TA-AATAA
1 TATTATATTAA
17169899 TATTATATTAA
1 TATTATATTAA
* *
17169910 T-TAATAAATAA
1 TATTAT-ATTAA
*
17169921 TATGTTACATTAA
1 TA--TTATATTAA
17169934 TAATATATTATTAA
1 T-AT-TA-TATTAA
* *
17169948 TATAATA-TAT
1 TATTATATTAA
17169958 TATT-TATTAA
1 TATTATATTAA
*
17169968 TATAATATTAA
1 TATTATATTAA
17169979 T
1 T
17169980 TAATATAGTA
Statistics
Matches: 88, Mismatches: 20, Indels: 28
0.65 0.15 0.21
Matches are distributed among these distances:
8 2 0.02
9 6 0.07
10 23 0.26
11 33 0.38
12 6 0.07
13 9 0.10
14 9 0.10
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.49
Consensus pattern (11 bp):
TATTATATTAA
Found at i:17169966 original size:20 final size:20
Alignment explanation
Indices: 17169820--17169975 Score: 102
Period size: 20 Copynumber: 8.0 Consensus size: 20
17169810 TGACGCTACA
*
17169820 ATTATTTTATTAATAAAATAAT
1 ATTA-TTTATTAATATAAT-AT
17169842 ATT-TTTATT-ATATAA-AT
1 ATTATTTATTAATATAATAT
17169859 ATTA--TATTAATA-AATATT
1 ATTATTTATTAATATAATA-T
17169877 ATTATATGTATT-ATATAA-AT
1 ATTAT-T-TATTAATATAATAT
* *
17169897 AATATTATATTAAT-TAATAA
1 ATTATT-TATTAATATAATAT
* * *
17169917 ATAATATGTTACAT-TAATA-
1 ATTATTTATTA-ATATAATAT
17169936 A-TATATTATTAATATAATAT
1 ATTAT-TTATTAATATAATAT
17169956 ATTATTTATTAATATAATAT
1 ATTATTTATTAATATAATAT
17169976 TAATTAATAT
Statistics
Matches: 107, Mismatches: 11, Indels: 34
0.70 0.07 0.22
Matches are distributed among these distances:
16 6 0.06
17 9 0.08
18 9 0.08
19 27 0.25
20 40 0.37
21 7 0.07
22 9 0.08
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (20 bp):
ATTATTTATTAATATAATAT
Found at i:17170009 original size:101 final size:96
Alignment explanation
Indices: 17169836--17170017 Score: 253
Period size: 101 Copynumber: 1.8 Consensus size: 96
17169826 TTATTAATAA
*
17169836 AATAATATTTTTATTATATAAATATTATATTAATAAATATTATTATATGTATTATATAAATAATA
1 AATAATATTATTATTATATAAATATTATATTAATAAATATTATTATATGTATTATATAAATAATA
*
17169901 TTATATTAATTAATAAATAATATGTTACATT
66 TTATATTAATAAATAAATAATATGTTACATT
17169932 AATAATA-TATTATTAATATAATATATTATTTATTAATATAATATTAATTAATATAGTATT-TAT
1 AATAATATTATTATT-ATATAA-ATATTA--TATTAATA-AATATT-ATT-ATAT-GTATTATAT
17169995 AAATAATA-TATATTAATAAATAA
58 AAATAATATTATATTAATAAATAA
17170018 TATTATAATA
Statistics
Matches: 76, Mismatches: 2, Indels: 11
0.85 0.02 0.12
Matches are distributed among these distances:
95 6 0.08
96 13 0.17
97 6 0.08
99 8 0.11
100 6 0.08
101 17 0.22
102 15 0.20
103 5 0.07
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.48
Consensus pattern (96 bp):
AATAATATTATTATTATATAAATATTATATTAATAAATATTATTATATGTATTATATAAATAATA
TTATATTAATAAATAAATAATATGTTACATT
Found at i:17170031 original size:25 final size:25
Alignment explanation
Indices: 17169997--17170097 Score: 81
Period size: 21 Copynumber: 4.1 Consensus size: 25
17169987 GTATTTATAA
17169997 ATAATATATATTAATAAATAATATT
1 ATAATATATATTAATAAATAATATT
17170022 AT-A-ATATA-TAA-AAATAAT-TT
1 ATAATATATATTAATAAATAATATT
* *
17170042 ATTAATA-A-ATAAATAAAATTATATT
1 A-TAATATATATTAAT-AAATAATATT
*
17170067 AATAAATAATATATTAATAAATATTATT
1 -AT-AAT-ATATATTAATAAATAATATT
17170095 ATA
1 ATA
17170098 TTATTAATAA
Statistics
Matches: 59, Mismatches: 5, Indels: 23
0.68 0.06 0.26
Matches are distributed among these distances:
20 3 0.05
21 9 0.15
22 7 0.12
23 6 0.10
24 7 0.12
25 5 0.08
26 5 0.08
27 3 0.05
28 9 0.15
29 5 0.08
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (25 bp):
ATAATATATATTAATAAATAATATT
Found at i:17170094 original size:50 final size:50
Alignment explanation
Indices: 17169880--17170095 Score: 165
Period size: 54 Copynumber: 4.2 Consensus size: 50
17169870 AAATATTATT
* * *
17169880 ATATGTATTATATAAATAATATTATATTAATTAATAAATAATATGTTACATTA
1 ATAT-TATTA-ATAAATAATATAATATTAATTAATAAATAATATATTA-ATAA
* * * *
17169933 ATAATATATTATTAATATAATATATTATTTATTAATATAATATTA-ATTAAT--
1 AT-AT-TATTAATAA-ATAATATAATATTAATTAATA-AATAATATATTAATAA
* * * *
17169984 ATAGTATTTATAAATAATAT-ATATTAATAAATAATATTATAATATATAA-AA
1 ATATTATTAATAAATAATATAATATTAATTAATAA-ATAAT-ATAT-TAATAA
*
17170035 ATAATTTATTAATAAATAA-ATAAAATTATATTAATAAATAATATATTAATAA
1 AT-A-TTATTAATAAATAATATAATATTA-ATTAATAAATAATATATTAATAA
17170087 ATATTATTA
1 ATATTATTA
17170096 TATTATTAAT
Statistics
Matches: 129, Mismatches: 20, Indels: 31
0.72 0.11 0.17
Matches are distributed among these distances:
46 1 0.01
47 13 0.10
48 8 0.06
49 9 0.07
50 10 0.08
51 8 0.06
52 11 0.09
53 28 0.22
54 35 0.27
55 6 0.05
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.45
Consensus pattern (50 bp):
ATATTATTAATAAATAATATAATATTAATTAATAAATAATATATTAATAA
Found at i:17170254 original size:16 final size:17
Alignment explanation
Indices: 17170212--17170257 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
17170202 TTCAATAAAT
17170212 TAAAA-ATAAAACAAAA
1 TAAAATATAAAACAAAA
* * *
17170228 TAAATTTTAAAA-AACA
1 TAAAATATAAAACAAAA
17170244 TAAAATATAAAACA
1 TAAAATATAAAACA
17170258 CACAACAATA
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
16 17 0.74
17 6 0.26
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.22
Consensus pattern (17 bp):
TAAAATATAAAACAAAA
Found at i:17172690 original size:130 final size:129
Alignment explanation
Indices: 17172395--17172929 Score: 500
Period size: 130 Copynumber: 4.1 Consensus size: 129
17172385 ACAACAAAAA
** * ** * *
17172395 ATTGTTGTGAAAACTTATTTTATTTGCAATGATTTTTCAATGCCGTTGCTTAAGTTGTTTTTTAA
1 ATTGTTGCAAAAACATATTTTATTTGCAATGATTTTTCAATATCGTTGCTTAAGTTTTTTTTTTA
** * * ** * * * * * * *
17172460 TATTTTATTTAATGATAAAAATGGTTGCTATAC-TAGTTTTTGTCATGTTTGTAATGATTAAATA
66 T-TTTTATACAATAACAAAAAAAGTT-AT-TACAAAATTTTTATCATATTTGTAATGATAAAAAA
*
17172524 TT
128 GT
*** * *
17172526 ATTGTTGCAAAATTTTATTTTATTTGCAACGATTTTTCAATATCGTTGCTTAAGTTTTTTTTTTG
1 ATTGTTGCAAAAACATATTTTATTTGCAATGATTTTTCAATATCGTTGCTTAAGTTTTTTTTTTA
**
17172591 TGTTTTATACAATAACAAAAAAAGTTATTACAAAATTTTTATCATATTTGTAACAATAAAAAAGT
66 T-TTTTATACAATAACAAAAAAAGTTATTACAAAATTTTTATCATATTTGTAATGATAAAAAAGT
** * * *** ***
17172656 ATTGTTGCTGAAATATGTTTTATTTGCAATGATTTTTCAATATTAATGCTTAAGTAACTTTTTTA
1 ATTGTTGCAAAAACATATTTTATTTGCAATGATTTTTCAATATCGTTGCTTAAGTTTTTTTTTTA
* ** *
17172721 TATTTTATACAACAACAAAAAAAGTTATTATGAAATTTTTATCATATTTGTAATGATAAAAATGT
66 T-TTTTATACAATAACAAAAAAAGTTATTACAAAATTTTTATCATATTTGTAATGATAAAAAAGT
* * *
17172786 ATTGTGGCAAAAACCTATTTTATTTGCAATGATTTTTCAATGTCGTTGCTTAA-TTTATTTTTTA
1 ATTGTTGCAAAAACATATTTTATTTGCAATGATTTTTCAATATCGTTGCTTAAGTTT-TTTTTT-
* * * * *
17172850 AATATTTTTATACAATGAC-ATAAAAGCTATTTCAAATATTTTTATCATATTTCTAATGATAAAA
64 --TATTTTTATACAATAACAAAAAAAGTTATTACAAA-ATTTTTATCATATTTGTAATGATAAAA
*
17172914 AATT
126 AAGT
17172918 ATTGTTGCAAAA
1 ATTGTTGCAAAA
17172930 TAGTATAACA
Statistics
Matches: 327, Mismatches: 71, Indels: 11
0.80 0.17 0.03
Matches are distributed among these distances:
129 4 0.01
130 183 0.56
131 86 0.26
132 51 0.16
133 3 0.01
ACGTcount: A:0.35, C:0.08, G:0.11, T:0.47
Consensus pattern (129 bp):
ATTGTTGCAAAAACATATTTTATTTGCAATGATTTTTCAATATCGTTGCTTAAGTTTTTTTTTTA
TTTTTATACAATAACAAAAAAAGTTATTACAAAATTTTTATCATATTTGTAATGATAAAAAAGT
Found at i:17176238 original size:45 final size:46
Alignment explanation
Indices: 17176174--17176266 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
17176164 ATAAAATTGT
*
17176174 TATGAAAGGTATAAAGAAATTT-TAACAGTATTCATGTAACAATAA
1 TATGAAAGGTATAAAGAAATTTCAAACAGTATTCATGTAACAATAA
17176219 TATGAAAGGTATAAAGAAATTTCAAACAGTATTCATGTAACAATAA
1 TATGAAAGGTATAAAGAAATTTCAAACAGTATTCATGTAACAATAA
17176265 TA
1 TA
17176267 GTTGTTATAA
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
45 22 0.48
46 24 0.52
ACGTcount: A:0.49, C:0.08, G:0.13, T:0.30
Consensus pattern (46 bp):
TATGAAAGGTATAAAGAAATTTCAAACAGTATTCATGTAACAATAA
Found at i:17176807 original size:62 final size:62
Alignment explanation
Indices: 17176732--17176851 Score: 204
Period size: 62 Copynumber: 1.9 Consensus size: 62
17176722 ACAATTTTTA
*
17176732 TTTTTTTCAACAACACTATAAATTATTACATTAATTCTTTATTAAAAAGGTTAATAGCTATT
1 TTTTTTTAAACAACACTATAAATTATTACATTAATTCTTTATTAAAAAGGTTAATAGCTATT
* * *
17176794 TTTTTTTAAACAACACTATAAGTTATTGCATTAATTCTTTATTAACAAGGTTAATAGC
1 TTTTTTTAAACAACACTATAAATTATTACATTAATTCTTTATTAAAAAGGTTAATAGC
17176852 AATGATCTCG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 54 1.00
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.44
Consensus pattern (62 bp):
TTTTTTTAAACAACACTATAAATTATTACATTAATTCTTTATTAAAAAGGTTAATAGCTATT
Found at i:17186518 original size:21 final size:22
Alignment explanation
Indices: 17186470--17186531 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 22
17186460 GTATATCATT
* *
17186470 TGTAATTATTATAATATAATTAA
1 TGTAATTATTAT-TTAAAATTAA
17186493 T-TAATTATTATTTAAAATT-A
1 TGTAATTATTATTTAAAATTAA
17186513 TGTAA-TATCTA-TTAAAATT
1 TGTAATTAT-TATTTAAAATT
17186532 TTATATGAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
20 13 0.37
21 11 0.31
22 10 0.29
23 1 0.03
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (22 bp):
TGTAATTATTATTTAAAATTAA
Found at i:17196319 original size:2 final size:2
Alignment explanation
Indices: 17196314--17196362 Score: 50
Period size: 2 Copynumber: 26.0 Consensus size: 2
17196304 GAATACACAC
* *
17196314 AT AT AT AT AT AT AT A- AT -T AA AT AG AT A- AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
17196353 AT AT TT AT AT
1 AT AT AT AT AT
17196363 CATAGGATGG
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
1 3 0.08
2 35 0.92
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (2 bp):
AT
Found at i:17197741 original size:19 final size:19
Alignment explanation
Indices: 17197705--17197742 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
17197695 GCATTCTTTC
**
17197705 TTTTTCTTTTTCTCTTTTT
1 TTTTTCTTTTAATCTTTTT
17197724 TTTTTCTTTTAAT-TTTTT
1 TTTTTCTTTTAATCTTTTT
17197742 T
1 T
17197743 GTCTTGTACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (19 bp):
TTTTTCTTTTAATCTTTTT
Found at i:17199393 original size:20 final size:21
Alignment explanation
Indices: 17199356--17199400 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 21
17199346 ATTATCTGGA
17199356 TTTTTATTTTCCTTTCTTTC-C
1 TTTTTATTTTCC-TTCTTTCTC
17199377 TTTTTATTTTTCC-TCTTTCTC
1 TTTTTA-TTTTCCTTCTTTCTC
17199398 TTT
1 TTT
17199401 CTCTTCCTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.27
21 10 0.45
22 6 0.27
ACGTcount: A:0.04, C:0.22, G:0.00, T:0.73
Consensus pattern (21 bp):
TTTTTATTTTCCTTCTTTCTC
Found at i:17201028 original size:241 final size:236
Alignment explanation
Indices: 17200610--17201044 Score: 694
Period size: 241 Copynumber: 1.8 Consensus size: 236
17200600 AAATAACCAA
* * *
17200610 TATAAAAAGAAAAGGAAAATAAATATAAGTACTGTTTTTTAAAAATTTCTTTTTATTTTTGAATT
1 TATAAAAAGAAAAAGAAAATAAAAATAAGTACTGTTTTTTAAAAATTTCTTTTTATTTTTAAATT
* * *
17200675 AAACAATTAACAAAAATAATTTTCCCCTTTTTTTATTTTTTGAACATAATATAAAATTTTAATAT
66 AAACAATTAACAAAAATAATTTTCCCCATTTTTTATTTTTTAAACATAATATAAAATTGTAATAT
*
17200740 ATTTTCAAATATTATAATTCAAATAAATAAATTTAAATTTTCTATTTTTAAGGAGTTTTTATTTT
131 ATTTACAAATATTATAATTCAAATAAATAAATTTAAATTTTCTATTTTTAAGGAGTTTTTATTTT
17200805 TCAAAAATATTATAATTAAGAATAATCAAATTTCAAAATTT
196 TCAAAAATATTATAATTAAGAATAATCAAATTTCAAAATTT
* *
17200846 TATAAAAATAAAAAGAAAATAAAAAATAAGTAGT-TTTTTTAAAAAAATTTTCTTTTTATTTTTT
1 TATAAAAAGAAAAAGAAAAT-AAAAATAAGTACTGTTTTTT--AAAAA-TTTCTTTTTA-TTTTT
*
17200910 AAATTAAACAATTAACAAAAATAATTTT-TCCATTTTTTACTTTTTTAAAACATAATATAAAATT
61 AAATTAAACAATTAACAAAAATAATTTTCCCCATTTTTTA-TTTTTT-AAACATAATATAAAATT
*
17200974 GTAATATATTTACAAATATTATAATTCAAATAAATAAGTTTAAATTTTCTATTTTTAAGGAGTTT
124 GTAATATATTTACAAATATTATAATTCAAATAAATAAATTTAAATTTTCTATTTTTAAGGAGTTT
17201039 TTATTT
189 TTATTT
17201045 CAAAATATAA
Statistics
Matches: 181, Mismatches: 11, Indels: 9
0.90 0.05 0.04
Matches are distributed among these distances:
236 24 0.13
237 11 0.06
238 5 0.03
239 19 0.10
240 38 0.21
241 84 0.46
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (236 bp):
TATAAAAAGAAAAAGAAAATAAAAATAAGTACTGTTTTTTAAAAATTTCTTTTTATTTTTAAATT
AAACAATTAACAAAAATAATTTTCCCCATTTTTTATTTTTTAAACATAATATAAAATTGTAATAT
ATTTACAAATATTATAATTCAAATAAATAAATTTAAATTTTCTATTTTTAAGGAGTTTTTATTTT
TCAAAAATATTATAATTAAGAATAATCAAATTTCAAAATTT
Found at i:17212498 original size:19 final size:19
Alignment explanation
Indices: 17212462--17212499 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
17212452 GCATTCTTTC
**
17212462 TTTTTCTTTTTCTCTTTTT
1 TTTTTCTTTTAATCTTTTT
17212481 TTTTTCTTTTAAT-TTTTT
1 TTTTTCTTTTAATCTTTTT
17212499 T
1 T
17212500 GTCTTGTACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (19 bp):
TTTTTCTTTTAATCTTTTT
Found at i:17214147 original size:25 final size:25
Alignment explanation
Indices: 17214113--17214160 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
17214103 ATTATCTGGA
*
17214113 TTTTTATTTTCCTCTCTTTTTCTTT
1 TTTTTATTTTCCTCTCTCTTTCTTT
* *
17214138 TTTTTTTTTTTCTCTCTCTTTCT
1 TTTTTATTTTCCTCTCTCTTTCT
17214161 CTCTCTCTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (25 bp):
TTTTTATTTTCCTCTCTCTTTCTTT
Found at i:17219344 original size:2 final size:2
Alignment explanation
Indices: 17219337--17219364 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
17219327 TAATAATCAT
17219337 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
17219365 GAACCATGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:17220256 original size:3 final size:3
Alignment explanation
Indices: 17220248--17220294 Score: 76
Period size: 3 Copynumber: 15.7 Consensus size: 3
17220238 ACAAAAAACA
* *
17220248 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAA AAT AAA AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
17220295 AATGGATGTT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:17222426 original size:20 final size:20
Alignment explanation
Indices: 17222401--17222441 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
17222391 TAATTTCATA
17222401 AATAAATTTTATTACTTATT
1 AATAAATTTTATTACTTATT
*
17222421 AATAAATTTTATTATTTATT
1 AATAAATTTTATTACTTATT
17222441 A
1 A
17222442 GCATTTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (20 bp):
AATAAATTTTATTACTTATT
Found at i:17223232 original size:3 final size:3
Alignment explanation
Indices: 17223224--17223300 Score: 100
Period size: 3 Copynumber: 25.0 Consensus size: 3
17223214 TAATGTAATG
* * *
17223224 TAT TAT TAT TATT TAT CATT TAC TAT TAT TAT TAT TGT TAT TAT TAT
1 TAT TAT TAT TA-T TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
17223271 TAT TAT TAT TAT TAT TAT CAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
17223301 GTTTATTTAT
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
3 59 0.92
4 5 0.08
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:17224767 original size:27 final size:27
Alignment explanation
Indices: 17224728--17224800 Score: 89
Period size: 25 Copynumber: 2.7 Consensus size: 27
17224718 TTAAATTATA
17224728 TTAAAATATTTAATATAATATTTAAATT
1 TTAAAA-ATTTAATATAATATTTAAATT
17224756 TTAAAAATTTAATAT--TATTTAAATT
1 TTAAAAATTTAATATAATATTTAAATT
* *
17224781 ATAAATATATTAAT-TAATAT
1 TTAAAAAT-TTAATATAATAT
17224801 AATATTTATC
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
25 17 0.43
26 5 0.12
27 12 0.30
28 6 0.15
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (27 bp):
TTAAAAATTTAATATAATATTTAAATT
Found at i:17225038 original size:14 final size:15
Alignment explanation
Indices: 17225008--17225045 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
17224998 AAATTATATT
17225008 TTTTTAATTTCTAAAA
1 TTTTT-ATTTCTAAAA
17225024 TTTTTATTT-TAAAA
1 TTTTTATTTCTAAAA
*
17225038 TTATTATT
1 TTTTTATT
17225046 ATTATTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 12 0.57
15 4 0.19
16 5 0.24
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (15 bp):
TTTTTATTTCTAAAA
Found at i:17225806 original size:15 final size:14
Alignment explanation
Indices: 17225747--17225797 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
17225737 GTTAACTTTT
*
17225747 AAAATTAAAAAAT-
1 AAAATTAAAATATC
* * *
17225760 ATAATTAAATCTATA
1 AAAATTAAA-ATATC
17225775 AAAATTAAAATATC
1 AAAATTAAAATATC
17225789 AAAATTAAA
1 AAAATTAAA
17225798 TGATTCAAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
13 8 0.27
14 14 0.47
15 8 0.27
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (14 bp):
AAAATTAAAATATC
Found at i:17229754 original size:24 final size:24
Alignment explanation
Indices: 17229718--17229764 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
17229708 TATTTCTAAA
* *
17229718 ATTTTCTAGTTTTTTTAATTTTAT
1 ATTTTATAGTTTTTATAATTTTAT
* *
17229742 ATTTTATATTTTTTATGATTTTA
1 ATTTTATAGTTTTTATAATTTTA
17229765 AGGCAAGTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.70
Consensus pattern (24 bp):
ATTTTATAGTTTTTATAATTTTAT
Found at i:17230774 original size:19 final size:18
Alignment explanation
Indices: 17230741--17230796 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 18
17230731 CAACATGTTT
17230741 AATATACATAATAATATA
1 AATATACATAATAATATA
17230759 AATATACATAAATAATATA
1 AATATACAT-AATAATATA
17230778 AATATACATGAATAGATAT
1 AATATACAT-AATA-ATAT
17230797 GATTAACACG
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
18 9 0.26
19 22 0.63
20 4 0.11
ACGTcount: A:0.59, C:0.05, G:0.04, T:0.32
Consensus pattern (18 bp):
AATATACATAATAATATA
Found at i:17231967 original size:25 final size:25
Alignment explanation
Indices: 17231939--17231989 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
17231929 ACTCTAGTTA
17231939 TTGTGTTTTGATTATTTGTTGGATT
1 TTGTGTTTTGATTATTTGTTGGATT
17231964 TTGTGTTTTGATTATTTGTTGGATT
1 TTGTGTTTTGATTATTTGTTGGATT
17231989 T
1 T
17231990 GGATTAATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.12, C:0.00, G:0.24, T:0.65
Consensus pattern (25 bp):
TTGTGTTTTGATTATTTGTTGGATT
Found at i:17231983 original size:13 final size:14
Alignment explanation
Indices: 17231936--17231983 Score: 59
Period size: 13 Copynumber: 3.7 Consensus size: 14
17231926 TTGACTCTAG
17231936 TTATTGTGTTTTGA
1 TTATTGTGTTTTGA
*
17231950 TTATT-TG-TTGGA
1 TTATTGTGTTTTGA
17231962 TT-TTGTGTTTTGA
1 TTATTGTGTTTTGA
17231975 TTATT-TGTT
1 TTATTGTGTT
17231984 GGATTTGGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
11 2 0.07
12 8 0.28
13 12 0.41
14 7 0.24
ACGTcount: A:0.12, C:0.00, G:0.21, T:0.67
Consensus pattern (14 bp):
TTATTGTGTTTTGA
Found at i:17235985 original size:16 final size:16
Alignment explanation
Indices: 17235964--17235994 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
17235954 TCAAACAAAC
*
17235964 AAAAAATAATAATAAT
1 AAAAAAAAATAATAAT
17235980 AAAAAAAAATAATAA
1 AAAAAAAAATAATAA
17235995 AATGGGTGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (16 bp):
AAAAAAAAATAATAAT
Found at i:17238125 original size:20 final size:20
Alignment explanation
Indices: 17238100--17238140 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
17238090 TAATTTCATA
17238100 AATAAATTTTATTACTTATT
1 AATAAATTTTATTACTTATT
*
17238120 AATAAATTTTATTATTTATT
1 AATAAATTTTATTACTTATT
17238140 A
1 A
17238141 GCATTTTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (20 bp):
AATAAATTTTATTACTTATT
Found at i:17238914 original size:3 final size:3
Alignment explanation
Indices: 17238906--17238986 Score: 126
Period size: 3 Copynumber: 27.0 Consensus size: 3
17238896 ACTAATGTTG
* * *
17238906 TAT TAT TAT TAT TAT TAT CAT TAT TAC TAT TAT TAT TAT TGT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
17238954 TAT TAT TAT TAT TAT TAT TAT CAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
17238987 GTTTATTTAT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 70 1.00
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:17240440 original size:20 final size:20
Alignment explanation
Indices: 17240411--17240496 Score: 56
Period size: 20 Copynumber: 4.3 Consensus size: 20
17240401 TTTTTAAATT
*
17240411 ATATTAAAATATTTAATATA
1 ATATTTAAATATTTAATATA
*
17240431 ATATTTAAAT-TTTAA-AAA
1 ATATTTAAATATTTAATATA
17240449 AT-TTTAATATTATTTAAATTATA
1 ATATTTAA-A-TATTT-AA-TATA
* * *
17240472 A-ATAT-ATTAATTAATATA
1 ATATTTAAATATTTAATATA
17240490 ATATTTA
1 ATATTTA
17240497 TCTTTATCGT
Statistics
Matches: 50, Mismatches: 7, Indels: 18
0.67 0.09 0.24
Matches are distributed among these distances:
17 5 0.10
18 10 0.20
19 11 0.22
20 16 0.32
21 2 0.04
22 1 0.02
23 5 0.10
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATTTAAATATTTAATATA
Found at i:17240473 original size:27 final size:28
Alignment explanation
Indices: 17240399--17240473 Score: 91
Period size: 27 Copynumber: 2.6 Consensus size: 28
17240389 TGTCATGAAT
*
17240399 TATT-TTTAAATTATATTAAAATATTTAA
1 TATTATTTAAATTATA-AAAAATATTTAA
*
17240427 TATAATATTTAAATTTTAAAAAAT-TTTAA
1 TAT--TATTTAAATTATAAAAAATATTTAA
17240456 TATTATTTAAATTATAAA
1 TATTATTTAAATTATAAA
17240474 TATATTAATT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
27 14 0.34
28 3 0.07
29 8 0.20
30 6 0.15
31 10 0.24
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (28 bp):
TATTATTTAAATTATAAAAAATATTTAA
Found at i:17240728 original size:15 final size:16
Alignment explanation
Indices: 17240698--17240738 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
17240688 AAAATTATAT
17240698 TTTTTTAATTTCTAAAA
1 TTTTTT-ATTTCTAAAA
17240715 TTTTTTATTT-TAAAA
1 TTTTTTATTTCTAAAA
*
17240730 TTATTTATT
1 TTTTTTATT
17240739 ATTATTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 13 0.57
16 4 0.17
17 6 0.26
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (16 bp):
TTTTTTATTTCTAAAA
Found at i:17241706 original size:160 final size:158
Alignment explanation
Indices: 17241323--17241950 Score: 1034
Period size: 160 Copynumber: 4.0 Consensus size: 158
17241313 TAAAATTTTA
* * * * *
17241323 CCAAGTAATTAGTTGTTGGAAATGATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAA
1 CCAAGTAATTAATTATCGGAAATTATTCTCAATTAACTCTAATACTTTTAGCAGAAAATTGAGAA
* *
17241388 AATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGGGGCTCCGTCGTCGG
66 AATTCCCTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGG
* *
17241453 ATTTATTAAAG--AAAAATCAAAATCAT
131 ATTAATTAAAGAAAAAAATCAAAATCAG
*
17241479 CC-AG---TTAATTATTGGAAATTATTCTCAATTAACTCTAATACTTTTAGCAGAAAATTGAGAA
1 CCAAGTAATTAATTATCGGAAATTATTCTCAATTAACTCTAATACTTTTAGCAGAAAATTGAGAA
17241540 AATTCCCTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGG
66 AATTCCCTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGG
17241605 ATTAATTAAAGAAAAAAAAATCAAAATCAG
131 ATTAATTAAAG--AAAAAAATCAAAATCAG
17241635 CCAAGTAATTAATTATCGGAAATTATTCTCAATTAACTCTAATACTTTTAGCAGAAAATTGAGAA
1 CCAAGTAATTAATTATCGGAAATTATTCTCAATTAACTCTAATACTTTTAGCAGAAAATTGAGAA
17241700 AATTCCCTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGG
66 AATTCCCTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGG
17241765 ATTAATTAAAGAAAAAAATCAAAATCAG
131 ATTAATTAAAGAAAAAAATCAAAATCAG
* *
17241793 CCAAGTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAA
1 CCAAGTAATTAATTATCGGAAATTATTCTCAATTAACTCTAATACTTTTAGCAGAAAATTGAGAA
* * *
17241858 AATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTTTACTTGTAGAGGCTCCGTCGTCG
66 AATTCCCTCACCTCAAGAGTATGCAAGAAAAACTACTG-TTTCACTTGCAGAGGCTCCGTCGTCG
* *
17241923 GATTAATAAAAAAAAAAAATCAAAATCA
130 GATTAATTAAAGAAAAAAATCAAAATCA
17241951 AAGTCAAATA
Statistics
Matches: 447, Mismatches: 16, Indels: 15
0.94 0.03 0.03
Matches are distributed among these distances:
152 126 0.28
155 2 0.00
156 18 0.04
157 2 0.00
158 117 0.26
159 50 0.11
160 132 0.30
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.29
Consensus pattern (158 bp):
CCAAGTAATTAATTATCGGAAATTATTCTCAATTAACTCTAATACTTTTAGCAGAAAATTGAGAA
AATTCCCTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGG
ATTAATTAAAGAAAAAAATCAAAATCAG
Done.