Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25814696
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 122000 characters in sequence are not A, C, G, or T
File 92 of 126
Found at i:17988357 original size:11 final size:12
Alignment explanation
Indices: 17988331--17988359 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
17988321 ATGATAAGTG
17988331 TTAATTGGTAAT
1 TTAATTGGTAAT
17988343 TTAATTGGT-AT
1 TTAATTGGTAAT
17988354 TTAATT
1 TTAATT
17988360 ATGTTTACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 8 0.47
12 9 0.53
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (12 bp):
TTAATTGGTAAT
Found at i:17988670 original size:17 final size:18
Alignment explanation
Indices: 17988639--17988673 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
17988629 AATTTAATTG
17988639 ATAATATTGAAAATATAT
1 ATAATATTGAAAATATAT
17988657 ATAATATT-AAAATATAT
1 ATAATATTGAAAATATAT
17988674 TTCAAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (18 bp):
ATAATATTGAAAATATAT
Found at i:17991218 original size:23 final size:24
Alignment explanation
Indices: 17991170--17991230 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 24
17991160 TTAATTGAAT
* *
17991170 TAAATAATAATATTTATTAATAAA
1 TAAATATTAATATTTATAAATAAA
*
17991194 TAAATATTAATTTTTA-AAATAAA
1 TAAATATTAATATTTATAAATAAA
17991217 TAAAT-TTAA-ATTTA
1 TAAATATTAATATTTA
17991231 AATTTAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 4 0.12
22 4 0.12
23 11 0.33
24 14 0.42
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (24 bp):
TAAATATTAATATTTATAAATAAA
Found at i:17991238 original size:22 final size:22
Alignment explanation
Indices: 17991177--17991232 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
17991167 AATTAAATAA
*
17991177 TAATATTTATTAATAAATAAATAT
1 TAATATTTA-AAATAAATAAAT-T
*
17991201 TAATTTTTAAAATAAATAAATT
1 TAATATTTAAAATAAATAAATT
17991223 TAA-ATTTAAA
1 TAATATTTAAA
17991233 TTTAAAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 6 0.21
22 4 0.14
23 11 0.38
24 8 0.28
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
TAATATTTAAAATAAATAAATT
Found at i:17991271 original size:18 final size:17
Alignment explanation
Indices: 17991232--17991272 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
17991222 TTAAATTTAA
17991232 ATTTAA-AAAAATTATT
1 ATTTAATAAAAATTATT
17991248 -TATTAATAAAATATTATT
1 AT-TTAATAAAA-ATTATT
17991266 ATTTAAT
1 ATTTAAT
17991273 TCATCTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
15 1 0.05
16 4 0.19
17 4 0.19
18 11 0.52
19 1 0.05
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTTAATAAAAATTATT
Found at i:17991714 original size:17 final size:17
Alignment explanation
Indices: 17991692--17991724 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
17991682 AATGAGAAAA
17991692 TTTTTCTTAACATTTTC
1 TTTTTCTTAACATTTTC
*
17991709 TTTTTCTTAATATTTT
1 TTTTTCTTAACATTTT
17991725 GGGATGTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.12, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTTCTTAACATTTTC
Found at i:17992456 original size:19 final size:18
Alignment explanation
Indices: 17992434--17992472 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
17992424 TATACTCAAT
* *
17992434 ATTTTTAAATTTAAATATA
1 ATTTATAAAATTAAAT-TA
17992453 ATTTATAAAATTAAATTA
1 ATTTATAAAATTAAATTA
17992471 AT
1 AT
17992473 AAAATTTTGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTTATAAAATTAAATTA
Found at i:17996390 original size:16 final size:16
Alignment explanation
Indices: 17996360--17996393 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
17996350 AGAACAAACC
**
17996360 CAAAATAATTTAAATT
1 CAAAATAATACAAATT
17996376 CAAAATAATACAAATT
1 CAAAATAATACAAATT
17996392 CA
1 CA
17996394 GAAGTTCCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29
Consensus pattern (16 bp):
CAAAATAATACAAATT
Found at i:17998916 original size:28 final size:29
Alignment explanation
Indices: 17998885--17998952 Score: 93
Period size: 28 Copynumber: 2.4 Consensus size: 29
17998875 TTTTAAAAAT
*
17998885 TATAAAATATTTATAAATAATCA-TATTA
1 TATAAAATATTTATAAAAAATCATTATTA
* *
17998913 TATAAAATATTTATAAAAAATTATTTTTA
1 TATAAAATATTTATAAAAAATCATTATTA
*
17998942 TAAAAAATATT
1 TATAAAATATT
17998953 AATTATATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
28 21 0.60
29 14 0.40
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.44
Consensus pattern (29 bp):
TATAAAATATTTATAAAAAATCATTATTA
Found at i:17998946 original size:14 final size:13
Alignment explanation
Indices: 17998885--17998946 Score: 63
Period size: 14 Copynumber: 4.5 Consensus size: 13
17998875 TTTTAAAAAT
17998885 TATAAAATATTTA
1 TATAAAATATTTA
17998898 TA-AATAATCATATTA
1 TATAA-AAT-AT-TTA
17998913 TATAAAATATTTA
1 TATAAAATATTTA
* *
17998926 TAAAAAATTATTTT
1 TATAAAA-TATTTA
17998940 TATAAAA
1 TATAAAA
17998947 AATATTAATT
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
12 2 0.05
13 14 0.34
14 15 0.37
15 8 0.20
16 2 0.05
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (13 bp):
TATAAAATATTTA
Found at i:17998958 original size:16 final size:16
Alignment explanation
Indices: 17998895--17998959 Score: 50
Period size: 16 Copynumber: 4.3 Consensus size: 16
17998885 TATAAAATAT
* *
17998895 TTATAAATAATCA-TA
1 TTATAAAAAATTATTA
*
17998910 TTATATAAAA-TA-T-
1 TTATAAAAAATTATTA
*
17998923 TTATAAAAAATTATTT
1 TTATAAAAAATTATTA
17998939 TTATAAAAAA-TATTAA
1 TTATAAAAAATTATT-A
17998955 TTATA
1 TTATA
17998960 TAATCAAATA
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
13 9 0.22
14 4 0.10
15 13 0.32
16 15 0.37
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTATAAAAAATTATTA
Found at i:17999883 original size:8 final size:8
Alignment explanation
Indices: 17999870--17999894 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
17999860 TCCTGGTGGT
17999870 GAGCCGCC
1 GAGCCGCC
17999878 GAGCCGCC
1 GAGCCGCC
17999886 GAGCCGCC
1 GAGCCGCC
17999894 G
1 G
17999895 TGGGCGATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.48, G:0.40, T:0.00
Consensus pattern (8 bp):
GAGCCGCC
Found at i:18001992 original size:2 final size:2
Alignment explanation
Indices: 18001985--18002012 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
18001975 GTAAGTTTTA
18001985 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18002013 TTGAGGTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:18002150 original size:21 final size:21
Alignment explanation
Indices: 18002121--18002185 Score: 58
Period size: 25 Copynumber: 2.9 Consensus size: 21
18002111 TATTTTTAAA
*
18002121 AATTTTTAAAAATTTATATTT
1 AATTATTAAAAATTTATATTT
18002142 AATTATTAATAAAATATTATTATTT
1 AATTATT-A-AAAAT-TTA-TATTT
* *
18002167 AATTTATTAATAATATATA
1 AA-TTATTAAAAATTTATA
18002186 AAATTTATAC
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
21 6 0.17
22 3 0.08
23 7 0.19
24 7 0.19
25 8 0.22
26 5 0.14
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
AATTATTAAAAATTTATATTT
Found at i:18002170 original size:25 final size:25
Alignment explanation
Indices: 18002129--18002184 Score: 80
Period size: 26 Copynumber: 2.3 Consensus size: 25
18002119 AAAATTTTTA
18002129 AAAAT-TTATATTTAA-TTATTAAT
1 AAAATATTATATTTAATTTATTAAT
18002152 AAAATATTATTATTTAATTTATTAAT
1 AAAATATTA-TATTTAATTTATTAAT
*
18002178 AATATAT
1 AAAATAT
18002185 AAAATTTATA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 5 0.17
24 3 0.10
25 7 0.24
26 14 0.48
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (25 bp):
AAAATATTATATTTAATTTATTAAT
Found at i:18002191 original size:25 final size:25
Alignment explanation
Indices: 18002138--18002192 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
18002128 AAAAATTTAT
**
18002138 ATTTAATTATTAATAAAATATTATT
1 ATTTAATTATTAATAAAATATTAAA
*
18002163 ATTTAATTTATTAATAATATA-TAAA
1 ATTTAA-TTATTAATAAAATATTAAA
18002188 ATTTA
1 ATTTA
18002193 TACACTCGCG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (25 bp):
ATTTAATTATTAATAAAATATTAAA
Found at i:18003359 original size:25 final size:23
Alignment explanation
Indices: 18003331--18003376 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
18003321 TAATTAGTTG
*
18003331 TAATATATTTTTATTTAAAAAATAT
1 TAATATATATTTA--TAAAAAATAT
18003356 TAATATATATTTATAAAAAAT
1 TAATATATATTTATAAAAAAT
18003377 TACATAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 8 0.40
25 12 0.60
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (23 bp):
TAATATATATTTATAAAAAATAT
Found at i:18005964 original size:2 final size:2
Alignment explanation
Indices: 18005957--18006001 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
18005947 CCAAACGAAG
*
18005957 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
18005999 TA T
1 TA T
18006002 TTGTCAAAGA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:18007808 original size:12 final size:12
Alignment explanation
Indices: 18007793--18007817 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
18007783 TAAAATGACA
18007793 TATAATATTATT
1 TATAATATTATT
18007805 TATAATATTATT
1 TATAATATTATT
18007817 T
1 T
18007818 TATTCGATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TATAATATTATT
Found at i:18008434 original size:22 final size:22
Alignment explanation
Indices: 18008423--18008499 Score: 154
Period size: 22 Copynumber: 3.5 Consensus size: 22
18008413 AATTTAATAA
18008423 AATTTAATAATTAATAAAAGTT
1 AATTTAATAATTAATAAAAGTT
18008445 AATTTAATAATTAATAAAAGTT
1 AATTTAATAATTAATAAAAGTT
18008467 AATTTAATAATTAATAAAAGTT
1 AATTTAATAATTAATAAAAGTT
18008489 AATTTAATAAT
1 AATTTAATAAT
18008500 CGGATCGATT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 55 1.00
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.42
Consensus pattern (22 bp):
AATTTAATAATTAATAAAAGTT
Found at i:18015292 original size:18 final size:18
Alignment explanation
Indices: 18015269--18015320 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
18015259 TTTTATTAAA
18015269 TATATTAAAAATTAATTT
1 TATATTAAAAATTAATTT
** *
18015287 TATATTAGTAA-TATTTT
1 TATATTAAAAATTAATTT
18015304 TAATATTATAAAATTAA
1 T-ATATTA-AAAATTAA
18015321 AATTAATTTT
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
17 6 0.24
18 15 0.60
19 2 0.08
20 2 0.08
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (18 bp):
TATATTAAAAATTAATTT
Found at i:18019776 original size:13 final size:13
Alignment explanation
Indices: 18019758--18019783 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
18019748 TGACAACTGT
18019758 GATAAAAATTTGA
1 GATAAAAATTTGA
18019771 GATAAAAATTTGA
1 GATAAAAATTTGA
18019784 AAATGCCCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.15, T:0.31
Consensus pattern (13 bp):
GATAAAAATTTGA
Found at i:18019840 original size:22 final size:23
Alignment explanation
Indices: 18019791--18019842 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
18019781 TGAAAATGCC
***
18019791 CTTTTTTAAAAAATTTCTTTTAA
1 CTTTTTTAAAAAATTTCTGAGAA
*
18019814 ATTTTTTAAAAAATTT-TGAGAA
1 CTTTTTTAAAAAATTTCTGAGAA
18019836 CTTTTTT
1 CTTTTTT
18019843 TTATGGTTTC
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 9 0.38
23 15 0.62
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.56
Consensus pattern (23 bp):
CTTTTTTAAAAAATTTCTGAGAA
Found at i:18020300 original size:18 final size:19
Alignment explanation
Indices: 18020275--18020311 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
18020265 TTTTATCTAT
18020275 TTTCTTTT-TTTT-TTCTC
1 TTTCTTTTCTTTTATTCTC
18020292 TTTCATTTTCTTTTATTCTC
1 TTTC-TTTTCTTTTATTCTC
18020312 CATCTTGACA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 4 0.24
18 4 0.24
19 4 0.24
20 5 0.29
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTCTTTTCTTTTATTCTC
Found at i:18020357 original size:19 final size:19
Alignment explanation
Indices: 18020333--18020380 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
18020323 GAGAGAAAAA
*
18020333 AAAAAGAGAATAAAAAAGG
1 AAAAAGAGAACAAAAAAGG
* *
18020352 AAAAAGAAAACAAAAGAGG
1 AAAAAGAGAACAAAAAAGG
*
18020371 TAAAAGAGAA
1 AAAAAGAGAA
18020381 GACAATTAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.73, C:0.02, G:0.21, T:0.04
Consensus pattern (19 bp):
AAAAAGAGAACAAAAAAGG
Found at i:18032051 original size:20 final size:20
Alignment explanation
Indices: 18032026--18032065 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
18032016 CATAAGTCAG
18032026 CCTAAAACACAAGCGTGCAA
1 CCTAAAACACAAGCGTGCAA
18032046 CCTAAAACACAAGCGTGCAA
1 CCTAAAACACAAGCGTGCAA
18032066 GCACTAGAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.30, G:0.15, T:0.10
Consensus pattern (20 bp):
CCTAAAACACAAGCGTGCAA
Found at i:18032966 original size:370 final size:368
Alignment explanation
Indices: 18032170--18032975 Score: 1114
Period size: 368 Copynumber: 2.2 Consensus size: 368
18032160 AAAAGTGTTT
* * * * * * *
18032170 GATGGTGTAAATCCTTTTATACCCCAGTGAGCCTCCTTTTATATTCAATGTGGGATTCAAGACTC
1 GATGGTGTGAACCCTTATATACCCCAGTGACCCTCCTATTATGTTCGATGTGGGATTCAAGACTC
* * * * * *
18032235 CTCTTTAGGTCAATGACATTCTCTCCCACCCAACCTCGTGATGCCCTCGTCACGGAGACTAGTCA
66 TTCTTTAGATCAATGACATTCTCCCCCACCCAACCTCATGACGCCCTCGTCACGGAGACTAGCCA
*
18032300 CCCTGCCTACCTCCCTTGAGGCGCTTGACGTAGATCGAACGATTTAGAGCTGACTCTGATACCAC
131 CCCTGCCTACCTCCCTCGAGGCGCTTGACGTAGATCGAACGATTTAGAGCTGACTCTGATACCAC
* ** * * *
18032365 TTGTCACGGGTCGAGACTTAAGCTCCGACCTGCGTGGCTCCAAGACCCAGCATTCACCCTTCCGA
196 TTGTCACGGGTCGAGACTTAAGCTCCGACCCGCACGGCTCCAAGACCCAACATCCACCCATCCGA
* * *
18032430 CATCCCAGATCAACCTAATCGTCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCCT
261 CATCCCAGATCAACCTAACCGCCACGGTTCACACCCTTATGAGGTATTGTCCGCTCTGGCCCCCT
* *
18032495 GGCCTTACGATTTTGTCCTACAAAAGACGCCTCACAAGACAGA
326 GGCCTCACGATTTTGTCCTACAAAAGACACCTCACAAGACAGA
* *
18032538 GGTGGTGTGAACCCTTATATACCCCAGTAACCCTCCTATTATGTTCGATGTGGGATTCAAGACTC
1 GATGGTGTGAACCCTTATATACCCCAGTGACCCTCCTATTATGTTCGATGTGGGATTCAAGACTC
* * * *
18032603 TTTTTTAGATCCATGACATTCTCCCCCACCCAACCTCATGACGCCCTCGTCACGGAGGCTGGCCA
66 TTCTTTAGATCAATGACATTCTCCCCCACCCAACCTCATGACGCCCTCGTCACGGAGACTAGCCA
* * * * *
18032668 CCCTGCCTACCTCCCTCGAGGCGCTTGGCGTGGCTCGAACGGTTTA-AGGCT-ATCTCTGATATC
131 CCCTGCCTACCTCCCTCGAGGCGCTTGACGTAGATCGAACGATTTAGA-GCTGA-CTCTGATACC
* ** *
18032731 ACTTGTCACGGGTTGAGACTTAAGCTCCGAACCCGCACGGCTCCGGGACCCGAACATCCACTCAT
194 ACTTGTCACGGGTCGAGACTTAAGCTCCG-ACCCGCACGGCTCCAAGACCC-AACATCCACCCAT
* * * ** *
18032796 CCGGCGTCCTAGATCAGGCTGACCGCCACGGTTCACACCCTTATGAGGTATTGTCCGCTCTGGCC
257 CCGACATCCCAGATCAACCTAACCGCCACGGTTCACACCCTTATGAGGTATTGTCCGCTCTGGCC
*
18032861 CCCTGGCCTCACGATTTTGTCCTACAAAAGGCACCTCACAATGA-AGA
322 CCCTGGCCTCACGATTTTGTCCTACAAAAGACACCTCACAA-GACAGA
*
18032908 GATGGTGTGAACCCTTATATACCCCAGTGACCCTCCTATTATGTTCGATGTAGGATTCAAGACTC
1 GATGGTGTGAACCCTTATATACCCCAGTGACCCTCCTATTATGTTCGATGTGGGATTCAAGACTC
18032973 TTC
66 TTC
18032976 CTTGGGTCCG
Statistics
Matches: 382, Mismatches: 51, Indels: 8
0.87 0.12 0.02
Matches are distributed among these distances:
367 2 0.01
368 192 0.50
369 16 0.04
370 170 0.45
371 2 0.01
ACGTcount: A:0.22, C:0.32, G:0.21, T:0.26
Consensus pattern (368 bp):
GATGGTGTGAACCCTTATATACCCCAGTGACCCTCCTATTATGTTCGATGTGGGATTCAAGACTC
TTCTTTAGATCAATGACATTCTCCCCCACCCAACCTCATGACGCCCTCGTCACGGAGACTAGCCA
CCCTGCCTACCTCCCTCGAGGCGCTTGACGTAGATCGAACGATTTAGAGCTGACTCTGATACCAC
TTGTCACGGGTCGAGACTTAAGCTCCGACCCGCACGGCTCCAAGACCCAACATCCACCCATCCGA
CATCCCAGATCAACCTAACCGCCACGGTTCACACCCTTATGAGGTATTGTCCGCTCTGGCCCCCT
GGCCTCACGATTTTGTCCTACAAAAGACACCTCACAAGACAGA
Found at i:18039676 original size:18 final size:18
Alignment explanation
Indices: 18039639--18039676 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
18039629 TACAAGACTT
* *
18039639 AGTGGAATCTGGGGATCC
1 AGTGGAATCTGGGAAACC
18039657 AGTGGAATCTGGGAAACC
1 AGTGGAATCTGGGAAACC
18039675 AG
1 AG
18039677 AACTCTAGCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.29, C:0.16, G:0.37, T:0.18
Consensus pattern (18 bp):
AGTGGAATCTGGGAAACC
Found at i:18042738 original size:22 final size:22
Alignment explanation
Indices: 18042712--18042755 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
18042702 TGTATATTTA
* *
18042712 TATTTGTATCTCTAGAATTAAG
1 TATTTGAATCCCTAGAATTAAG
18042734 TATTTGAATCCCTAGAATTAAG
1 TATTTGAATCCCTAGAATTAAG
18042756 GAAGATTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (22 bp):
TATTTGAATCCCTAGAATTAAG
Found at i:18046661 original size:22 final size:22
Alignment explanation
Indices: 18046635--18046678 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
18046625 TGTATATTTA
* *
18046635 TATTTGTATCTCTAGAATTAAG
1 TATTTGAATCCCTAGAATTAAG
18046657 TATTTGAATCCCTAGAATTAAG
1 TATTTGAATCCCTAGAATTAAG
18046679 GAAGATTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (22 bp):
TATTTGAATCCCTAGAATTAAG
Found at i:18049279 original size:22 final size:22
Alignment explanation
Indices: 18049253--18049296 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
18049243 CAGGTGCCTT
*
18049253 TTGCAAACAATTTTCCAATTAA
1 TTGCAAACAATCTTCCAATTAA
* *
18049275 TTGCACACACTCTTCCAATTAA
1 TTGCAAACAATCTTCCAATTAA
18049297 GTTATCTGCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (22 bp):
TTGCAAACAATCTTCCAATTAA
Found at i:18054411 original size:15 final size:14
Alignment explanation
Indices: 18054388--18054416 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
18054378 ATGTTATAAT
18054388 TTTTCAAAAATATA
1 TTTTCAAAAATATA
18054402 TTTTCAAAAA-ATA
1 TTTTCAAAAATATA
18054415 TT
1 TT
18054417 ATGACTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (14 bp):
TTTTCAAAAATATA
Found at i:18054431 original size:34 final size:35
Alignment explanation
Indices: 18054387--18054459 Score: 96
Period size: 34 Copynumber: 2.1 Consensus size: 35
18054377 AATGTTATAA
18054387 TTTTTCAAAAAT-ATATTTTCAAAAAATATTATGAC
1 TTTTTCAAAAATGA-ATTTTCAAAAAATATTATGAC
* * *
18054422 TTTTT-AAAAATGAATTTTCAAGATATGTTATGAC
1 TTTTTCAAAAATGAATTTTCAAAAAATATTATGAC
18054456 TTTT
1 TTTT
18054460 CATAAACAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
34 28 0.82
35 6 0.18
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.47
Consensus pattern (35 bp):
TTTTTCAAAAATGAATTTTCAAAAAATATTATGAC
Found at i:18054473 original size:34 final size:34
Alignment explanation
Indices: 18054375--18054473 Score: 87
Period size: 34 Copynumber: 2.9 Consensus size: 34
18054365 TGCTTTTTTG
* * *
18054375 AAAATGTTATAATTTTTCA-AAAATATATTTTCAA
1 AAAATGTTATGACTTTTCATAAAA-AGATTTTCAA
*
18054409 AAAATATTATGACTTTT--TAAAAATGAATTTTCAA
1 AAAATGTTATGACTTTTCATAAAAA-G-ATTTTCAA
* * *
18054443 GATATGTTATGACTTTTCATAAACAGATTTT
1 AAAATGTTATGACTTTTCATAAAAAGATTTT
18054474 TTAAAGTTAT
Statistics
Matches: 52, Mismatches: 8, Indels: 10
0.74 0.11 0.14
Matches are distributed among these distances:
32 1 0.02
33 4 0.08
34 41 0.79
35 1 0.02
36 5 0.10
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.43
Consensus pattern (34 bp):
AAAATGTTATGACTTTTCATAAAAAGATTTTCAA
Found at i:18056226 original size:17 final size:17
Alignment explanation
Indices: 18056196--18056230 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
18056186 AAATCTTCGA
*
18056196 ATTAAATTATATATTTT
1 ATTAAATTAGATATTTT
*
18056213 ATTAATTTAGATATTTT
1 ATTAAATTAGATATTTT
18056230 A
1 A
18056231 AAATTTTATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (17 bp):
ATTAAATTAGATATTTT
Found at i:18056298 original size:24 final size:23
Alignment explanation
Indices: 18056271--18056316 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
18056261 TATGTAAACT
* *
18056271 TATTTAAATGAATTTAAAAAAATA
1 TATTAAAAT-AATGTAAAAAAATA
*
18056295 TATTAAAATAATGTCAAAAAAT
1 TATTAAAATAATGTAAAAAAAT
18056317 TTAAAATTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (23 bp):
TATTAAAATAATGTAAAAAAATA
Found at i:18056327 original size:21 final size:22
Alignment explanation
Indices: 18056288--18056328 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
18056278 ATGAATTTAA
18056288 AAAAATATATTAAAATAATGTC
1 AAAAATATATTAAAATAATGTC
18056310 AAAAA-AT-TTAAAATTAATG
1 AAAAATATATTAAAA-TAATG
18056329 AACTGAATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 7 0.39
22 5 0.28
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (22 bp):
AAAAATATATTAAAATAATGTC
Found at i:18057733 original size:9 final size:10
Alignment explanation
Indices: 18057718--18057743 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
18057708 TATTAAAAGA
18057718 TTAAAAAATT
1 TTAAAAAATT
18057728 TTAAAAAATT
1 TTAAAAAATT
18057738 TTAAAA
1 TTAAAA
18057744 TATAAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
TTAAAAAATT
Found at i:18058093 original size:17 final size:18
Alignment explanation
Indices: 18058058--18058095 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
18058048 TTTTTATAGT
18058058 AATATTTTAATATATTAA
1 AATATTTTAATATATTAA
18058076 AATATATTTAA-A-ATTAA
1 AATAT-TTTAATATATTAA
18058093 AAT
1 AAT
18058096 TAATAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.42
18 6 0.32
19 5 0.26
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
AATATTTTAATATATTAA
Found at i:18058511 original size:20 final size:20
Alignment explanation
Indices: 18058474--18058510 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
18058464 ATTAAATTAT
18058474 TTATTTAATTTTAATTTTAA
1 TTATTTAATTTTAATTTTAA
*
18058494 TTATTTTATTTT-ATTTT
1 TTATTTAATTTTAATTTT
18058511 TTATCTTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (20 bp):
TTATTTAATTTTAATTTTAA
Found at i:18061163 original size:66 final size:65
Alignment explanation
Indices: 18061087--18061218 Score: 183
Period size: 66 Copynumber: 2.0 Consensus size: 65
18061077 GGAGTGAAGC
* * * * *
18061087 TCGGGTGGTTGTAAAAAGATGATATTTGATTAGTATTCTTTTTTTTCATCAAATATTTTTAATCC
1 TCGGGTGGTTGCAAAAAGACGATATTTGATTAGCATT-TTTTTTTTCATAAAATATTTTAAATCC
18061152 T
65 T
* * *
18061153 TCGGGTGGTTGCAAGAAGACGATATTTTATTAGCATTTTTTTTTTTATAAAATATTTTAAATCCT
1 TCGGGTGGTTGCAAAAAGACGATATTTGATTAGCATTTTTTTTTTCATAAAATATTTTAAATCCT
18061218 T
1 T
18061219 TCTTTCCTCT
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
65 26 0.45
66 32 0.55
ACGTcount: A:0.28, C:0.09, G:0.15, T:0.48
Consensus pattern (65 bp):
TCGGGTGGTTGCAAAAAGACGATATTTGATTAGCATTTTTTTTTTCATAAAATATTTTAAATCCT
Found at i:18065229 original size:21 final size:21
Alignment explanation
Indices: 18065203--18065474 Score: 245
Period size: 21 Copynumber: 13.3 Consensus size: 21
18065193 AACAAAGACA
*
18065203 GCAGCAGACTACTGGTTTCCT
1 GCAGCAGACTGCTGGTTTCCT
*
18065224 GCAGCAGACTGTTGGTTTCCT
1 GCAGCAGACTGCTGGTTTCCT
* *
18065245 --A-C-GTCTGCTGGTTTTCT
1 GCAGCAGACTGCTGGTTTCCT
* ** * *
18065262 GTAATAGATTACTGGTTTCCT
1 GCAGCAGACTGCTGGTTTCCT
*
18065283 GCAGCAGACTGCTAGTTTCCT
1 GCAGCAGACTGCTGGTTTCCT
* * *
18065304 GCAGCAGATTACTGGTTTTCT
1 GCAGCAGACTGCTGGTTTCCT
*
18065325 ACAGCAGACTGCTGGTTTCCT
1 GCAGCAGACTGCTGGTTTCCT
*
18065346 ACAGCAGACTGCTGGTTTCCT
1 GCAGCAGACTGCTGGTTTCCT
* *
18065367 ACAGCAGATTGCTGGTTT-CT
1 GCAGCAGACTGCTGGTTTCCT
* * *
18065387 --TGC-GTCTGCTGATTTCCT
1 GCAGCAGACTGCTGGTTTCCT
* *
18065405 GCAGCAGATTACTGGTTTCCT
1 GCAGCAGACTGCTGGTTTCCT
* *
18065426 ACAGCAGACTGTTGGTTTCCT
1 GCAGCAGACTGCTGGTTTCCT
* *
18065447 ACAGCAGACTACTGGTTTCCT
1 GCAGCAGACTGCTGGTTTCCT
*
18065468 TCAGCAG
1 GCAGCAG
18065475 GTTTTTTCTT
Statistics
Matches: 202, Mismatches: 41, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
17 21 0.10
18 5 0.02
19 2 0.01
20 4 0.02
21 170 0.84
ACGTcount: A:0.18, C:0.25, G:0.24, T:0.34
Consensus pattern (21 bp):
GCAGCAGACTGCTGGTTTCCT
Found at i:18066270 original size:26 final size:29
Alignment explanation
Indices: 18066216--18066297 Score: 87
Period size: 29 Copynumber: 2.8 Consensus size: 29
18066206 AATAATTGTG
* *
18066216 TGAATATTACTTT-ATTATTTTTTCATTATT
1 TGAATA-TAATTTAATTATTTATT-ATTATT
*
18066246 TGAATATAATTTTATT-TTTATTTATTATT
1 TGAATATAATTTAATTATTTA-TTATTATT
*
18066275 TTAATATAATTTAATTATTTATT
1 TGAATATAATTTAATTATTTATT
18066298 TTTTATTGTT
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
29 30 0.67
30 15 0.33
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (29 bp):
TGAATATAATTTAATTATTTATTATTATT
Found at i:18066282 original size:29 final size:30
Alignment explanation
Indices: 18066216--18066304 Score: 110
Period size: 30 Copynumber: 3.0 Consensus size: 30
18066206 AATAATTGTG
* *
18066216 TGAATATTACTTTATTATTT-TTTCATTATT
1 TGAATATAATTTTATTATTTATTT-ATTATT
18066246 TGAATATAATTTTATT-TTTATTTATTATT
1 TGAATATAATTTTATTATTTATTTATTATT
* * *
18066275 TTAATATAATTTAATTATTTATTTTTTATT
1 TGAATATAATTTTATTATTTATTTATTATT
18066305 GTTTGGATAT
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
29 23 0.44
30 29 0.56
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (30 bp):
TGAATATAATTTTATTATTTATTTATTATT
Found at i:18066315 original size:33 final size:31
Alignment explanation
Indices: 18066230--18066319 Score: 103
Period size: 33 Copynumber: 2.8 Consensus size: 31
18066220 TATTACTTTA
*
18066230 TTATTTTTTCATTATTTGAATATAATTTTATTT
1 TTATTTTTT-ATT-TTTGAATATAATTTAATTT
*
18066263 TTATTTATTA-TTTT-AATATAATTTAATTAT
1 TTATTTTTTATTTTTGAATATAATTTAATT-T
*
18066293 TTATTTTTTATTGTTTGGATATAATTT
1 TTATTTTTTATT-TTTGAATATAATTT
18066320 GATCACTTGC
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
29 13 0.27
30 13 0.27
31 2 0.04
32 4 0.08
33 17 0.35
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.66
Consensus pattern (31 bp):
TTATTTTTTATTTTTGAATATAATTTAATTT
Found at i:18070361 original size:13 final size:13
Alignment explanation
Indices: 18070343--18070367 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18070333 TAAAAAATTA
18070343 TAAATAATATTTT
1 TAAATAATATTTT
18070356 TAAATAATATTT
1 TAAATAATATTT
18070368 CCTTATAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TAAATAATATTTT
Found at i:18070897 original size:18 final size:19
Alignment explanation
Indices: 18070876--18070919 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
18070866 TTTAACATTC
*
18070876 ATAAAATATGTTTATT-AT
1 ATAAAATATATTTATTAAT
18070894 ATAAAAT-TATTTATTAAT
1 ATAAAATATATTTATTAAT
*
18070912 ATTAAATA
1 ATAAAATA
18070920 ACAAATTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (19 bp):
ATAAAATATATTTATTAAT
Found at i:18071013 original size:28 final size:28
Alignment explanation
Indices: 18070983--18071072 Score: 92
Period size: 29 Copynumber: 3.1 Consensus size: 28
18070973 TTTTAAAACA
18070983 TTTTAAAAAATTTTAAAAGTTTTTATAAT
1 TTTTAAAAAATTTTAAAA-TTTTTATAAT
*** *
18071012 TTTTAAATTTTTTTAGAATTTTT-TGAAT
1 TTTTAAAAAATTTTAAAATTTTTAT-AAT
* *
18071040 TTTTAAAAACTTTTAAAATTTTTTAGAAT
1 TTTTAAAAAATTTTAAAA-TTTTTATAAT
18071069 TTTT
1 TTTT
18071073 TAAAGTTATT
Statistics
Matches: 49, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
27 1 0.02
28 22 0.45
29 26 0.53
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.58
Consensus pattern (28 bp):
TTTTAAAAAATTTTAAAATTTTTATAAT
Found at i:18071014 original size:9 final size:9
Alignment explanation
Indices: 18070972--18071072 Score: 67
Period size: 9 Copynumber: 10.6 Consensus size: 9
18070962 TTATTTTGAG
18070972 TTTTTAAAACA
1 TTTTT-AAA-A
*
18070983 TTTTAAAAA
1 TTTTTAAAA
*
18070992 ATTTTAAAA
1 TTTTTAAAA
*
18071001 GTTTTTATAA
1 -TTTTTAAAA
*
18071011 TTTTTAAATT
1 TTTTTAAA-A
*
18071021 TTTTTAGAA
1 TTTTTAAAA
**
18071030 TTTTTTGAA
1 TTTTTAAAA
18071039 TTTTTAAAAA
1 TTTTT-AAAA
*
18071049 CTTTTAAAA
1 TTTTTAAAA
*
18071058 TTTTTTAGAA
1 -TTTTTAAAA
18071068 TTTTT
1 TTTTT
18071073 TAAAGTTATT
Statistics
Matches: 71, Mismatches: 15, Indels: 10
0.74 0.16 0.10
Matches are distributed among these distances:
9 37 0.52
10 30 0.42
11 4 0.06
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:18071015 original size:19 final size:19
Alignment explanation
Indices: 18070993--18071079 Score: 77
Period size: 19 Copynumber: 4.6 Consensus size: 19
18070983 TTTTAAAAAA
*
18070993 TTTTAAAAGTTTTTATAAT
1 TTTTAAAAGTTTTTAGAAT
**
18071012 TTTTAAATTTTTTTAGAAT
1 TTTTAAAAGTTTTTAGAAT
** * *
18071031 TTTTTGAA-TTTTTAAAAAC
1 TTTTAAAAGTTTTT-AGAAT
*
18071050 TTTTAAAATTTTTTAGAAT
1 TTTTAAAAGTTTTTAGAAT
*
18071069 TTTTTAAAGTT
1 TTTTAAAAGTT
18071080 ATTTTTAAAA
Statistics
Matches: 52, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
18 5 0.10
19 42 0.81
20 5 0.10
ACGTcount: A:0.34, C:0.01, G:0.06, T:0.59
Consensus pattern (19 bp):
TTTTAAAAGTTTTTAGAAT
Found at i:18071093 original size:10 final size:10
Alignment explanation
Indices: 18070972--18071093 Score: 72
Period size: 10 Copynumber: 12.3 Consensus size: 10
18070962 TTATTTTGAG
18070972 TTTTTAAAACA
1 TTTTTAAAA-A
18070983 -TTTTAAAAA
1 TTTTTAAAAA
* *
18070992 ATTTTAAAAG
1 TTTTTAAAAA
*
18071002 TTTTT-ATAA
1 TTTTTAAAAA
*
18071011 TTTTT-AAAT
1 TTTTTAAAAA
* *
18071020 TTTTTTAGAA
1 TTTTTAAAAA
**
18071030 TTTTT-TGAA
1 TTTTTAAAAA
18071039 TTTTTAAAAA
1 TTTTTAAAAA
* *
18071049 CTTTTAAAAT
1 TTTTTAAAAA
* *
18071059 TTTTTAGAAT
1 TTTTTAAAAA
*
18071069 TTTTTAAAGTTA
1 TTTTTAAA--AA
18071081 TTTTTAAAAA
1 TTTTTAAAAA
18071091 TTT
1 TTT
18071094 CTTTTTATGT
Statistics
Matches: 87, Mismatches: 19, Indels: 11
0.74 0.16 0.09
Matches are distributed among these distances:
9 23 0.26
10 56 0.64
12 8 0.09
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.56
Consensus pattern (10 bp):
TTTTTAAAAA
Found at i:18073943 original size:225 final size:221
Alignment explanation
Indices: 18073541--18074387 Score: 879
Period size: 225 Copynumber: 3.8 Consensus size: 221
18073531 TTCTTTTAAT
* *
18073541 AAGAGAGAGAGAGAGGGAATTAACCTGATTCCATTCTTGTAAT-TGTATCAGATTTAGGCGACAC
1 AAGA-AGAGAGAGAGGGAATTAACCTGATTCCGTTCTTGT-ATCTGTATCAGACTTAGGCGACAC
* * *
18073605 TAGGCGTATTTCGGTC-AAATCGCTCGAAGAATCTATAGCAGTAGTCATTTCGATAATATAAAAA
64 TAGGCATATTTCGGTCGAAGT-GCTCGAAGAATCTATAGCAGTAGTCATTTCGATAATATAAGAA
*
18073669 AGCATGTTTGGAGCACATGAAATTTGAATAGCTTGTAAAGCACTCATGTTTCTTTTTTTCTTAAC
128 AGCATGTTTGGAGCACATGAAATTTGAATAGCTT-TAAAGCACTCATGTTTCTTTTCTT-TTAAC
*
18073734 AATAGAGGGGGTTTCTCAAAAAAAAAAAAAA
191 AAGAGAGGGGGTTTCTCAAAAAAAAAAAAAA
* * * **
18073765 AAGAAGGGAGAGAGAGGGAATTAACCTGACTCCGTTCTTGTATTTGAATCAGACTTAGGCGACTG
1 AAGAA--GAGAGAGAGGGAATTAACCTGATTCCGTTCTTGTATCTGTATCAGACTTAGGCGACAC
* * * * * * **
18073830 TTGGCATATTTC-ATCCGAAGTGTTTGAAGCATCTATAGCAGTAGTCATGTCGGCAATATAAGAA
64 TAGGCATATTTCGGT-CGAAGTGCTCGAAGAATCTATAGCAGTAGTCATTTCGATAATATAAGAA
* * *
18073894 AGCATGTTTGGAGCATATGAAATTTGAATAGCATTTAAAGCAGTCATGTTTCTTTGCTTTTAACA
128 AGCATGTTTGGAGCACATGAAATTTGAATAGC-TTTAAAGCACTCATGTTTCTTTTCTTTTAACA
*
18073959 AGAGAGAGAGAGTTTCTC----AAAAAAAAAA
192 AGAGAG-G-GGGTTTCTCAAAAAAAAAAAAAA
* *
18073987 AA-AAGAGAGAGA--GAATTAGCCTGATTCCGTTCTTGTATCTGTATCAGACTTAGGCGACACCA
1 AAGAAGAGAGAGAGGGAATTAACCTGATTCCGTTCTTGTATCTGTATCAGACTTAGGCGACACTA
* ** *
18074049 GGCGTATTTCGGTCGAACCGCTCGAAGAATCTATAGTAGTAGTCATTTCGATAATATAAGAAAGC
66 GGCATATTTCGGTCGAAGTGCTCGAAGAATCTATAGCAGTAGTCATTTCGATAATATAAGAAAGC
* *
18074114 ATGTTTGGAGCACATGAAATTTGAATAGC-TTGAAGCACTCATGTTTCTTTTCTTTTAAGAAGAG
131 ATGTTTGGAGCACATGAAATTTGAATAGCTTTAAAGCACTCATGTTTCTTTTCTTTTAACAAGAG
*
18074178 AGAGGGTTTCTCAAAAAAAAAAAAGAATGAGAAA
196 AGGGGGTTTCTC----AAAAAAAA-AA--A-AAA
* * * * * *
18074212 AAGAAAAAGAGAGAGAGGGAATTAACTTGATTCCGTTTTTGCATCTGTATCAGACATAGGCGGCT
1 AAG---AAGAGAGAGAGGGAATTAACCTGATTCCGTTCTTGTATCTGTATCAGACTTAGGCGACA
* * * * * * * * * * **** * * * *
18074277 GTTGGCACATTTCGGCCAAAGTGTTCCAAGCATCTTTAGCTGTAGTGGCCTCGTTAATGTACGAG
63 CTAGGCATATTTCGGTCGAAGTGCTCGAAGAATCTATAGCAGTAGTCATTTCGATAATATAAGAA
* *
18074342 AGTATGTTTGGAGCACATGAAATTTGAATAGCATGTAAAGCACTCA
128 AGCATGTTTGGAGCACATGAAATTTGAATAGC-TTTAAAGCACTCA
18074388 AATTCCTCTT
Statistics
Matches: 512, Mismatches: 82, Indels: 49
0.80 0.13 0.08
Matches are distributed among these distances:
213 8 0.02
215 33 0.06
217 122 0.24
218 1 0.00
219 8 0.02
221 6 0.01
222 14 0.03
223 1 0.00
224 19 0.04
225 154 0.30
226 13 0.03
229 10 0.02
231 113 0.22
233 10 0.02
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (221 bp):
AAGAAGAGAGAGAGGGAATTAACCTGATTCCGTTCTTGTATCTGTATCAGACTTAGGCGACACTA
GGCATATTTCGGTCGAAGTGCTCGAAGAATCTATAGCAGTAGTCATTTCGATAATATAAGAAAGC
ATGTTTGGAGCACATGAAATTTGAATAGCTTTAAAGCACTCATGTTTCTTTTCTTTTAACAAGAG
AGGGGGTTTCTCAAAAAAAAAAAAAA
Found at i:18079621 original size:36 final size:36
Alignment explanation
Indices: 18079578--18079647 Score: 140
Period size: 36 Copynumber: 1.9 Consensus size: 36
18079568 TCTAATCACA
18079578 CCAAATCAATTATGTCATTAATCATGCCATAATAAT
1 CCAAATCAATTATGTCATTAATCATGCCATAATAAT
18079614 CCAAATCAATTATGTCATTAATCATGCCATAATA
1 CCAAATCAATTATGTCATTAATCATGCCATAATA
18079648 GTCAACATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.41, C:0.20, G:0.06, T:0.33
Consensus pattern (36 bp):
CCAAATCAATTATGTCATTAATCATGCCATAATAAT
Found at i:18082221 original size:16 final size:17
Alignment explanation
Indices: 18082200--18082234 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
18082190 GTCATTTCGA
*
18082200 TTCGATT-TAATCGGTT
1 TTCGATTGTAATCGATT
18082216 TTCGATTGTAATCGATT
1 TTCGATTGTAATCGATT
18082233 TT
1 TT
18082235 AAGATCGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.20, C:0.11, G:0.17, T:0.51
Consensus pattern (17 bp):
TTCGATTGTAATCGATT
Found at i:18083390 original size:42 final size:42
Alignment explanation
Indices: 18083341--18083583 Score: 215
Period size: 42 Copynumber: 5.9 Consensus size: 42
18083331 CAAAGACAGC
* * *
18083341 AGCAGACTACTAGTTTCCTGCAGTAGACTGCTGGTTTCCTGT
1 AGCAGACTACTGGTTTCCTGCAGCAGACTGTTGGTTTCCTGT
* ** * * *
18083383 AACAGACTGTTGGTTTCCT--A-C-GTCTGTTGGTTTTCTAT
1 AGCAGACTACTGGTTTCCTGCAGCAGACTGTTGGTTTCCTGT
* * * * *
18083421 AGTAGATTACTGGTTTCCTACAGCAGACTATTGGTTTTCTGT
1 AGCAGACTACTGGTTTCCTGCAGCAGACTGTTGGTTTCCTGT
* *
18083463 AGCAGATTACTGGTTTCCTGCAACAGACTGTTGGTTTCCTGT
1 AGCAGACTACTGGTTTCCTGCAGCAGACTGTTGGTTTCCTGT
* * * * * **
18083505 AGCAGATTGCTGGTTTCCTGCAACAAATTACTGGTTTCCTGT
1 AGCAGACTACTGGTTTCCTGCAGCAGACTGTTGGTTTCCTGT
** * *
18083547 AGCAGACTGTTGGTTTCCTACAGCAGACTATTGGTTT
1 AGCAGACTACTGGTTTCCTGCAGCAGACTGTTGGTTT
18083584 TCTTCAGCAG
Statistics
Matches: 163, Mismatches: 34, Indels: 8
0.80 0.17 0.04
Matches are distributed among these distances:
38 27 0.17
40 2 0.01
41 1 0.01
42 133 0.82
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (42 bp):
AGCAGACTACTGGTTTCCTGCAGCAGACTGTTGGTTTCCTGT
Found at i:18083500 original size:63 final size:63
Alignment explanation
Indices: 18083431--18083586 Score: 213
Period size: 63 Copynumber: 2.5 Consensus size: 63
18083421 AGTAGATTAC
* * *
18083431 TGGTTTCCTACAGCAGACTATTGGTTTTCTGTAGCAGATTACTGGTTTCCTGCAACAGACTGT
1 TGGTTTCCTACAGCAGACTATTGGTTTTCTGCAACAAATTACTGGTTTCCTGCAACAGACTGT
** * ** * * *
18083494 TGGTTTCCTGTAGCAGATTGCTGGTTTCCTGCAACAAATTACTGGTTTCCTGTAGCAGACTGT
1 TGGTTTCCTACAGCAGACTATTGGTTTTCTGCAACAAATTACTGGTTTCCTGCAACAGACTGT
18083557 TGGTTTCCTACAGCAGACTATTGGTTTTCT
1 TGGTTTCCTACAGCAGACTATTGGTTTTCT
18083587 TCAGCAGGTT
Statistics
Matches: 76, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
63 76 1.00
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.38
Consensus pattern (63 bp):
TGGTTTCCTACAGCAGACTATTGGTTTTCTGCAACAAATTACTGGTTTCCTGCAACAGACTGT
Found at i:18083580 original size:21 final size:21
Alignment explanation
Indices: 18083339--18083593 Score: 158
Period size: 21 Copynumber: 12.3 Consensus size: 21
18083329 AGCAAAGACA
*
18083339 GCAGCAGACTACTAGTTTCCT
1 GCAGCAGACTACTGGTTTCCT
* *
18083360 GCAGTAGACTGCTGGTTTCCT
1 GCAGCAGACTACTGGTTTCCT
* * **
18083381 GTAACAGACTGTTGGTTTCCT
1 GCAGCAGACTACTGGTTTCCT
* ** *
18083402 --A-C-GTCTGTTGGTTTTCT
1 GCAGCAGACTACTGGTTTCCT
** * *
18083419 ATAGTAGATTACTGGTTTCCT
1 GCAGCAGACTACTGGTTTCCT
* * *
18083440 ACAGCAGACTATTGGTTTTCT
1 GCAGCAGACTACTGGTTTCCT
* *
18083461 GTAGCAGATTACTGGTTTCCT
1 GCAGCAGACTACTGGTTTCCT
* **
18083482 GCAACAGACTGTTGGTTTCCT
1 GCAGCAGACTACTGGTTTCCT
* * *
18083503 GTAGCAGATTGCTGGTTTCCT
1 GCAGCAGACTACTGGTTTCCT
* * *
18083524 GCAACAAATTACTGGTTTCCT
1 GCAGCAGACTACTGGTTTCCT
* **
18083545 GTAGCAGACTGTTGGTTTCCT
1 GCAGCAGACTACTGGTTTCCT
* * *
18083566 ACAGCAGACTATTGGTTTTCT
1 GCAGCAGACTACTGGTTTCCT
*
18083587 TCAGCAG
1 GCAGCAG
18083594 GTTTTTTCTT
Statistics
Matches: 181, Mismatches: 49, Indels: 8
0.76 0.21 0.03
Matches are distributed among these distances:
17 13 0.07
18 1 0.01
19 2 0.01
21 165 0.91
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.37
Consensus pattern (21 bp):
GCAGCAGACTACTGGTTTCCT
Found at i:18084389 original size:26 final size:29
Alignment explanation
Indices: 18084335--18084416 Score: 87
Period size: 29 Copynumber: 2.8 Consensus size: 29
18084325 AATAATTGTG
* *
18084335 TGAATATTACTTT-ATTATTTTTTCATTATT
1 TGAATA-TAATTTAATTATTTATT-ATTATT
*
18084365 TGAATATAATTTTATT-TTTATTTATTATT
1 TGAATATAATTTAATTATTTA-TTATTATT
*
18084394 TTAATATAATTTAATTATTTATT
1 TGAATATAATTTAATTATTTATT
18084417 TTTTATTGTT
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
29 30 0.67
30 15 0.33
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (29 bp):
TGAATATAATTTAATTATTTATTATTATT
Found at i:18084401 original size:29 final size:30
Alignment explanation
Indices: 18084335--18084423 Score: 110
Period size: 30 Copynumber: 3.0 Consensus size: 30
18084325 AATAATTGTG
* *
18084335 TGAATATTACTTTATTATTT-TTTCATTATT
1 TGAATATAATTTTATTATTTATTT-ATTATT
18084365 TGAATATAATTTTATT-TTTATTTATTATT
1 TGAATATAATTTTATTATTTATTTATTATT
* * *
18084394 TTAATATAATTTAATTATTTATTTTTTATT
1 TGAATATAATTTTATTATTTATTTATTATT
18084424 GTTTGGATAT
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
29 23 0.44
30 29 0.56
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (30 bp):
TGAATATAATTTTATTATTTATTTATTATT
Found at i:18084434 original size:33 final size:31
Alignment explanation
Indices: 18084349--18084438 Score: 103
Period size: 33 Copynumber: 2.8 Consensus size: 31
18084339 TATTACTTTA
*
18084349 TTATTTTTTCATTATTTGAATATAATTTTATTT
1 TTATTTTTT-ATT-TTTGAATATAATTTAATTT
*
18084382 TTATTTATTA-TTTT-AATATAATTTAATTAT
1 TTATTTTTTATTTTTGAATATAATTTAATT-T
*
18084412 TTATTTTTTATTGTTTGGATATAATTT
1 TTATTTTTTATT-TTTGAATATAATTT
18084439 GATCACTTGC
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
29 13 0.27
30 13 0.27
31 2 0.04
32 4 0.08
33 17 0.35
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.66
Consensus pattern (31 bp):
TTATTTTTTATTTTTGAATATAATTTAATTT
Found at i:18089893 original size:332 final size:333
Alignment explanation
Indices: 18089271--18090181 Score: 1188
Period size: 332 Copynumber: 2.7 Consensus size: 333
18089261 CTAGAAATAG
* *** * *
18089271 ACGCCTTCAAAATTTTTTGACTAAATATTTT-ATGAATTATTAA-AAGCGTCTTTTACTGTAAAA
1 ACGCCTTTAAAATTTTCCCACTAAATATTTTGA-GAATTAGTAACGA-CGTCTTTTACTGTAAAA
** * * **
18089334 TACCTTCTATATACCATTACACATATTGTAAAACTGTTATTGAAGGCGTATATTTAAGATAGACA
64 TACCTTCTATATACCACAACACAAATTGTAACACTGTTATTGAAGGCGTATATTTAAGATAGATG
* *
18089399 CCTTTAATAATTCTTCTCATAGTTTGTATATAATCACTGAATGTGGTTTCAGAAAACAACGCCTT
129 CCTTTAATAATTCTTCTCACAGTTTGTATATAATCACTGAAGGTGGTTTCAGAAAACAACGCCTT
* * *
18089464 TAATAATTTCCCTAATAAAAGTTTTCAGGCTTATTAAAGGCGTCTTTTATTGTAAAACGCCTTCG
194 CAATAATTTTCCTAATAAAAGTTTTCAGGCTTATTAAAGGCGTCTTTTATTATAAAACGCCTTCG
* * ** *
18089529 ATATAGCTAGTAAGTAATGGAAGACGTTTATTAGAAAAGACGTCTTCAATTACTGAAGGTGTTTC
259 ATATAGCTAATAAGTAATGGAAGACATTTATTAGAAAAGACACCTTCAATTACTGAAGGCGTTTC
*
18089594 TTAATCACAA
324 TTAATAACAA
**
18089604 ACGTTTTTAAAATTTTCCCACTAAATATTTTGAGAATTAGTAACGACGTCTTTTACTGTAAAATA
1 ACGCCTTTAAAATTTTCCCACTAAATATTTTGAGAATTAGTAACGACGTCTTTTACTGTAAAATA
* * * *
18089669 CC-TCCATATACCACCACATAAATTGTAACACTGTTATTGAAGGCATATATTTAAGATAGATGCC
66 CCTTCTATATACCACAACACAAATTGTAACACTGTTATTGAAGGCGTATATTTAAGATAGATGCC
* * * * * *
18089733 TTTAATAATACCTCTCACAATTTTTATATAATGACTGAAGGTGGTTTCAGAAAACAATGCCTTCA
131 TTTAATAATTCTTCTCACAGTTTGTATATAATCACTGAAGGTGGTTTCAGAAAACAACGCCTTCA
18089798 ATAATTTTCCTAATAAAAGTTTTCAGGCTTATTAAAGGCGTCTTTTATTATAAAACGCCTTCGAT
196 ATAATTTTCCTAATAAAAGTTTTCAGGCTTATTAAAGGCGTCTTTTATTATAAAACGCCTTCGAT
* * *
18089863 ATAGCTAAT-AGTTAATGGAAGGCATTTATTAGAAAAGGCACCTTCAATTACTGAATGCGTTTCT
261 ATAGCTAATAAG-TAATGGAAGACATTTATTAGAAAAGACACCTTCAATTACTGAAGGCGTTTCT
*
18089927 TAATAACAG
325 TAATAACAA
* * * * * *
18089936 ATGCCTTTAAAATTTTCTCACTAAATATTTTGGGAATTAGTAACGACATATTCTACTGTAAAATA
1 ACGCCTTTAAAATTTTCCCACTAAATATTTTGAGAATTAGTAACGACGTCTTTTACTGTAAAATA
* **
18090001 CCTTCTATATACCACAACACAAATTGTAACACTATTATTGAAGGCGTATATTTAAGATAGATGTT
66 CCTTCTATATACCACAACACAAATTGTAACACTGTTATTGAAGGCGTATATTTAAGATAGATGCC
* * * * * *
18090066 TTTAATAATTCTTATCACAGTTTGTATATAATTACTGAAGG-CGATTCAGATACCAACGCCTTCA
131 TTTAATAATTCTTCTCACAGTTTGTATATAATCACTGAAGGTGGTTTCAGAAAACAACGCCTTCA
** *** * *
18090130 ATAATTTTTTTTAA-AAAA-TTTTTTTGATTATTAAAAGCGTCTTTTATTATAA
196 ATAA-TTTTCCTAATAAAAGTTTTCAGGCTTATTAAAGGCGTCTTTTATTATAA
18090182 GCTGCCTTCA
Statistics
Matches: 502, Mismatches: 71, Indels: 12
0.86 0.12 0.02
Matches are distributed among these distances:
331 31 0.06
332 317 0.63
333 152 0.30
334 2 0.00
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (333 bp):
ACGCCTTTAAAATTTTCCCACTAAATATTTTGAGAATTAGTAACGACGTCTTTTACTGTAAAATA
CCTTCTATATACCACAACACAAATTGTAACACTGTTATTGAAGGCGTATATTTAAGATAGATGCC
TTTAATAATTCTTCTCACAGTTTGTATATAATCACTGAAGGTGGTTTCAGAAAACAACGCCTTCA
ATAATTTTCCTAATAAAAGTTTTCAGGCTTATTAAAGGCGTCTTTTATTATAAAACGCCTTCGAT
ATAGCTAATAAGTAATGGAAGACATTTATTAGAAAAGACACCTTCAATTACTGAAGGCGTTTCTT
AATAACAA
Found at i:18098421 original size:18 final size:18
Alignment explanation
Indices: 18098384--18098427 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
18098374 TTTAACATTC
*
18098384 ATAAAATATATTTATTAT
1 ATAAAATATATTTATAAT
18098402 ATAAAAT-TATTTAGTAAT
1 ATAAAATATATTTA-TAAT
*
18098420 ATTAAATA
1 ATAAAATA
18098428 ATAAATTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 6 0.27
18 16 0.73
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (18 bp):
ATAAAATATATTTATAAT
Found at i:18098513 original size:10 final size:10
Alignment explanation
Indices: 18098500--18098593 Score: 81
Period size: 10 Copynumber: 9.7 Consensus size: 10
18098490 TCTTAAAAAA
*
18098500 TTTTAAAAGT
1 TTTTAAAATT
*
18098510 TTTTATAA-T
1 TTTTAAAATT
18098519 TTTT-AAATT
1 TTTTAAAATT
18098528 TTTTAAAAAATT
1 TTTT--AAAATT
***
18098540 TTTTTGTATT
1 TTTTAAAATT
18098550 TTTTAAAATT
1 TTTTAAAATT
18098560 TTTT--AA-T
1 TTTTAAAATT
*
18098567 TTTTAAAAAT
1 TTTTAAAATT
18098577 TTTTAAAATT
1 TTTTAAAATT
18098587 TTTTAAA
1 TTTTAAA
18098594 GTTATTTTTG
Statistics
Matches: 68, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
7 5 0.07
8 4 0.06
9 12 0.18
10 38 0.56
12 9 0.13
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (10 bp):
TTTTAAAATT
Found at i:18098600 original size:50 final size:48
Alignment explanation
Indices: 18098500--18098610 Score: 127
Period size: 50 Copynumber: 2.2 Consensus size: 48
18098490 TCTTAAAAAA
* *
18098500 TTTTAAAAGTTTTTATAATTTTTAAATTTTTTAAAAAATTTTTTTGTATT
1 TTTTAAAA-TTTTTATAATTTTTAAAATTTTT-AAAAATTTTTTAGTATT
18098550 TTTTAAAATTTTT-TAATTTTTAAAAATTTTT-AAAATTTTTTAAAGTTATT
1 TTTTAAAATTTTTATAATTTTT-AAAATTTTTAAAAATTTTTT--AG-TATT
*
18098600 TTTGAAAATTT
1 TTTTAAAATTT
18098611 CTTTTTATAC
Statistics
Matches: 54, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
47 10 0.19
48 8 0.15
49 14 0.26
50 22 0.41
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (48 bp):
TTTTAAAATTTTTATAATTTTTAAAATTTTTAAAAATTTTTTAGTATT
Found at i:18098610 original size:10 final size:9
Alignment explanation
Indices: 18098495--18098589 Score: 66
Period size: 9 Copynumber: 10.0 Consensus size: 9
18098485 AAACATCTTA
*
18098495 AAAAATTTT
1 AAAATTTTT
18098504 AAAAGTTTTT
1 AAAA-TTTTT
*
18098514 ATAATTTTT
1 AAAATTTTT
*
18098523 AAATTTTTT
1 AAAATTTTT
18098532 AAAAAATTTTTTT
1 --AAAA--TTTTT
** *
18098545 GTATTTTTT
1 AAAATTTTT
18098554 AAAATTTTT
1 AAAATTTTT
*
18098563 -TAATTTTT
1 AAAATTTTT
18098571 AAAAATTTTT
1 -AAAATTTTT
18098581 AAAATTTTT
1 AAAATTTTT
18098590 TAAAGTTATT
Statistics
Matches: 66, Mismatches: 13, Indels: 14
0.71 0.14 0.15
Matches are distributed among these distances:
8 7 0.11
9 36 0.55
10 14 0.21
11 4 0.06
13 5 0.08
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (9 bp):
AAAATTTTT
Found at i:18100094 original size:186 final size:185
Alignment explanation
Indices: 18099755--18100129 Score: 655
Period size: 186 Copynumber: 2.0 Consensus size: 185
18099745 TTGTTTTAGG
18099755 AATAAAGATAGAGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAA
1 AATAAAGATAGAGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAA
* *
18099820 AATATATTTACAAATAAAAAATTAATTAAAATTATAATTAAAAAGTAGGTTGATGCTGATGTTAA
66 AATATATTTAAAAATAAAAAATTAATTAAAATTATAATTAAAAAATAGGTTGATGCTGATGTTAA
*
18099885 GTGTGTTGTAGTCACATAACCTTTTTAGATCTTTAGGTGTTGTCCAGCTTGACTAA
131 GTGTGTTGTAGT-ACATAACCTTTTTAGATCTTTAGGTGTTGTCCAGCCTGACTAA
*
18099941 AATAAAGATAGAGAAATGATGAATAATGGAGCCTAGCCCATTCGACCTCAATGAATACATTTTAA
1 AATAAAGATAGAGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAA
*
18100006 AATATATTTAAAAATAAAAAATTAATTAAAATTATAATTAAAAAAATAGGTTGATAG-TGGTGTT
66 AATATATTTAAAAATAAAAAATTAATTAAAATTATAATT-AAAAAATAGGTTGAT-GCTGATGTT
18100070 AAGTGTGTTGTAGT-CATGAACCTTTTTAGATCTTTAGGTGTTGTCCAGCCTGACTAA
129 AAGTGTGTTGTAGTACAT-AACCTTTTTAGATCTTTAGGTGTTGTCCAGCCTGACTAA
18100127 AAT
1 AAT
18100130 CGACGTTGCT
Statistics
Matches: 181, Mismatches: 5, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
185 3 0.02
186 143 0.79
187 34 0.19
188 1 0.01
ACGTcount: A:0.40, C:0.11, G:0.16, T:0.33
Consensus pattern (185 bp):
AATAAAGATAGAGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAA
AATATATTTAAAAATAAAAAATTAATTAAAATTATAATTAAAAAATAGGTTGATGCTGATGTTAA
GTGTGTTGTAGTACATAACCTTTTTAGATCTTTAGGTGTTGTCCAGCCTGACTAA
Found at i:18100566 original size:185 final size:185
Alignment explanation
Indices: 18100254--18100626 Score: 631
Period size: 185 Copynumber: 2.0 Consensus size: 185
18100244 TTGTTTTAGG
18100254 AATAAAGATAGAGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAA
1 AATAAAGATAGAGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAA
*
18100319 AATATATTTAAAAATAAAAATTAATTAAAATTATAATTAAAAAGTAGGTTGATGTTGGTGTTAAG
66 AATATATTTAAAAATAAAAATTAATTAAAATTATAATTAAAAAATAGGTTGATGTTGGTGTTAAG
* * * *
18100384 TGTGTTGTAGTCAAATAACCTTTTTAGATCTTTAGGTGTTGTCCAGCTTGACTAA
131 TGTGTTATAGTCAAATAACATTTTTAGATCTTTAGGTATTGTCCAGCCTGACTAA
* * * *
18100439 AATAAAGATAGAGAAATGATGAATAATGGAGCCTAGTCCATTTGATCTCAATGAATACATTTTAA
1 AATAAAGATAGAGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAA
18100504 AATATATTTAAAAATAAAAATTAATTAAAATTATAATTAAAAAATAGGTTGATAG-TGGTGTTAA
66 AATATATTTAAAAATAAAAATTAATTAAAATTATAATTAAAAAATAGGTTGAT-GTTGGTGTTAA
**
18100568 GTGTGTTATAGTCATGTAACATTTTTAGATCTTTAGGTATTGTCCAGCCTGACTAA
130 GTGTGTTATAGTCAAATAACATTTTTAGATCTTTAGGTATTGTCCAGCCTGACTAA
18100624 AAT
1 AAT
18100627 CGACGCTGCT
Statistics
Matches: 176, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
185 175 0.99
186 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.16, T:0.34
Consensus pattern (185 bp):
AATAAAGATAGAGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAA
AATATATTTAAAAATAAAAATTAATTAAAATTATAATTAAAAAATAGGTTGATGTTGGTGTTAAG
TGTGTTATAGTCAAATAACATTTTTAGATCTTTAGGTATTGTCCAGCCTGACTAA
Found at i:18102329 original size:314 final size:313
Alignment explanation
Indices: 18101760--18102360 Score: 945
Period size: 314 Copynumber: 1.9 Consensus size: 313
18101750 NNNNNNNNNN
* *
18101760 ATTATTCATCATTTCTCTATTTTTATTCCTAAAACAAAATGAAATAAACAAAGCCAGATCAAGGT
1 ATTATTCATCATTTCTCTATCTTTATTCCTAAAACAAAATGAAATAAACAAAGCAAGATCAAGGT
* * *
18101825 AAACATGTTTTAAGAAAATAAAGAAAACAAATAACAAAAGCATCAACAATGATAATAAAACTTAG
66 AAACATATTCTAACAAAATAAAGAAAACAAATAACAAAAGCATCAACAATGATAATAAAACTTAG
* * * * *
18101890 GTTACCTTCTAAGCAGCGTCTATTTTAGTCAGGTTGGATAACACCTAAAAATCTAATAAAGTTAT
131 GTTACCTTCGAAGCAACGTCGATTTTAGTCAGGCTGGATAACACCTAAAAATCTAATAAAGTTAC
* *
18101955 GTGACTACAACACACTTAACACCAGCATCAACCTACTTTTTTAATTATAATTTTAATTAATTTTT
196 GTGACTACAACACACTTAACACCAGCATCAAACTACTTTTTTAATTATAATTTGAATTAATTTTT
18102020 TATTTTTAAATATATTTTAAAATGTATTCATTGAGGTCGAATGGACTGGGCTCC
261 TATTTTTAAATAT-TTTTAAAATGTATTCATTGAGGTCGAATGGACTGGGCTCC
* * *
18102074 ATTATTCATCCTTTCTTTATCTTTATTCCTAAAACAAAATGAAATAAACAAAGTAAGATCAAGGT
1 ATTATTCATCATTTCTCTATCTTTATTCCTAAAACAAAATGAAATAAACAAAGCAAGATCAAGGT
* *
18102139 AAACATATTCTAACAAAATAAAGAAAACAAATAATAAAAGCATCAACAATGATAATGAAACTT-G
66 AAACATATTCTAACAAAATAAAGAAAACAAATAACAAAAGCATCAACAATGATAATAAAACTTAG
* * * *
18102203 AGTTACTTTCGAAGCAATGTCGGTTTTAGTCAGGCTGGATAACACCTAAAGATCTAA-AAATGTT
131 -GTTACCTTCGAAGCAACGTCGATTTTAGTCAGGCTGGATAACACCTAAAAATCTAATAAA-GTT
* * *
18102267 ACGTGACTACACCACACTTAACACTAGCATCAAACTATTTTTTTAATTATAATTTGAATTAATTT
194 ACGTGACTACAACACACTTAACACCAGCATCAAACTACTTTTTTAATTATAATTTGAATTAATTT
18102332 TTTATTTTTAAATATTTTTAAAATGTATT
259 TTTATTTTTAAATATTTTTAAAATGTATT
18102361 TTTTTTCATT
Statistics
Matches: 261, Mismatches: 24, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
313 18 0.07
314 243 0.93
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.34
Consensus pattern (313 bp):
ATTATTCATCATTTCTCTATCTTTATTCCTAAAACAAAATGAAATAAACAAAGCAAGATCAAGGT
AAACATATTCTAACAAAATAAAGAAAACAAATAACAAAAGCATCAACAATGATAATAAAACTTAG
GTTACCTTCGAAGCAACGTCGATTTTAGTCAGGCTGGATAACACCTAAAAATCTAATAAAGTTAC
GTGACTACAACACACTTAACACCAGCATCAAACTACTTTTTTAATTATAATTTGAATTAATTTTT
TATTTTTAAATATTTTTAAAATGTATTCATTGAGGTCGAATGGACTGGGCTCC
Found at i:18103469 original size:10 final size:10
Alignment explanation
Indices: 18103456--18103536 Score: 64
Period size: 10 Copynumber: 8.6 Consensus size: 10
18103446 AAAATAACTT
18103456 TAAAAAATTA
1 TAAAAAATTA
18103466 TAAAAAATT-
1 TAAAAAATTA
* * *
18103475 TTAAAAGTTT
1 TAAAAAATTA
*
18103485 TTAAAAATT-
1 TAAAAAATTA
* *
18103494 CAAAAAATTT
1 TAAAAAATTA
*
18103504 TAAAAAAATA
1 TAAAAAATTA
18103514 -AAAAAATTA
1 TAAAAAATTA
18103523 T--AAAATTA
1 TAAAAAATTA
18103531 TAAAAA
1 TAAAAA
18103537 CTTTTAAAAT
Statistics
Matches: 57, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
8 8 0.14
9 22 0.39
10 27 0.47
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.32
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:18103510 original size:19 final size:19
Alignment explanation
Indices: 18103457--18103527 Score: 70
Period size: 19 Copynumber: 3.7 Consensus size: 19
18103447 AAATAACTTT
*
18103457 AAAAAATTATAAAAAATTT
1 AAAAAATTATAAAAAATTA
* * * * *
18103476 TAAAAGTTTTTAAAAATTC
1 AAAAAATTATAAAAAATTA
* *
18103495 AAAAAATTTTAAAAAAATA
1 AAAAAATTATAAAAAATTA
18103514 AAAAAATTATAAAA
1 AAAAAATTATAAAA
18103528 TTATAAAAAC
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 41 1.00
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (19 bp):
AAAAAATTATAAAAAATTA
Found at i:18103546 original size:18 final size:17
Alignment explanation
Indices: 18103469--18103547 Score: 52
Period size: 19 Copynumber: 4.4 Consensus size: 17
18103459 AAAATTATAA
* *
18103469 AAAATTTTAAAAGTTTTT
1 AAAATTATAAAA-ATTTT
18103487 AAAAATTCA-AAAAATTTT
1 -AAAATT-ATAAAAATTTT
* * *
18103505 AAAAAAATAAAAAAATTAT
1 --AAAATTATAAAAATTTT
18103524 AAAATTATAAAAACTTTT
1 AAAATTATAAAAA-TTTT
18103542 AAAATT
1 AAAATT
18103548 TTTTAAAATG
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
17 11 0.22
18 14 0.29
19 24 0.49
ACGTcount: A:0.61, C:0.03, G:0.01, T:0.35
Consensus pattern (17 bp):
AAAATTATAAAAATTTT
Found at i:18103651 original size:17 final size:18
Alignment explanation
Indices: 18103619--18103662 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
18103609 TCAAATTTGT
* *
18103619 TATTTAATATTAATAAATA
1 TATTTTATA-TAATAAACA
18103638 -ATTTTATATAATAAACA
1 TATTTTATATAATAAACA
18103655 TATTTTAT
1 TATTTTAT
18103663 GAATGTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (18 bp):
TATTTTATATAATAAACA
Found at i:18104186 original size:13 final size:13
Alignment explanation
Indices: 18104170--18104194 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18104160 TATTATAAGG
18104170 AAATATTATTTAA
1 AAATATTATTTAA
18104183 AAATATTATTTA
1 AAATATTATTTA
18104195 TAATTTTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
AAATATTATTTAA
Found at i:18108299 original size:29 final size:30
Alignment explanation
Indices: 18108251--18108322 Score: 103
Period size: 29 Copynumber: 2.4 Consensus size: 30
18108241 CCAAACAAAA
*
18108251 AAAAAATAATTAAATTATATTAAAATAAT-
1 AAAAAATAATAAAATTATATTAAAATAATG
*
18108280 AAATAAA-AATAAAATTATATTCAAATAATG
1 AAA-AAATAATAAAATTATATTAAAATAATG
18108310 AAAAAATAATAAA
1 AAAAAATAATAAA
18108323 GTAATATTCA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
29 26 0.68
30 12 0.32
ACGTcount: A:0.68, C:0.01, G:0.01, T:0.29
Consensus pattern (30 bp):
AAAAAATAATAAAATTATATTAAAATAATG
Found at i:18109105 original size:21 final size:21
Alignment explanation
Indices: 18109081--18109325 Score: 164
Period size: 21 Copynumber: 12.0 Consensus size: 21
18109071 AACCTGCTAA
18109081 AGGAAACCAGTAGTCTGCTGC
1 AGGAAACCAGTAGTCTGCTGC
** **
18109102 AGGAAACCAACAGTCTGCTAT
1 AGGAAACCAGTAGTCTGCTGC
* * * *
18109123 AAGAAACTAGTAATCTGCTGT
1 AGGAAACCAGTAGTCTGCTGC
** * ** *
18109144 AAAAAATCAACAGAC-G-T--
1 AGGAAACCAGTAGTCTGCTGC
* *
18109161 AGGAAACCAGTAATCTGCTGT
1 AGGAAACCAGTAGTCTGCTGC
*
18109182 AGGAAACCAGCAGTCTGCTGC
1 AGGAAACCAGTAGTCTGCTGC
*
18109203 AGGAAACCAGTAATCTGCTGC
1 AGGAAACCAGTAGTCTGCTGC
* * *
18109224 AGAAAACCAGCAGTCTACTGC
1 AGGAAACCAGTAGTCTGCTGC
* **
18109245 AGGAAACCAGTAATCTATTGC
1 AGGAAACCAGTAGTCTGCTGC
** *
18109266 AAAAAAACCAGTAG-ATG-T--
1 -AGGAAACCAGTAGTCTGCTGC
*
18109284 AGGAAACCAGCAGTCTGCTGC
1 AGGAAACCAGTAGTCTGCTGC
*
18109305 AGGAAACCAGTAGTCTACTGC
1 AGGAAACCAGTAGTCTGCTGC
18109326 TGTCTTTGCT
Statistics
Matches: 167, Mismatches: 48, Indels: 18
0.72 0.21 0.08
Matches are distributed among these distances:
17 18 0.11
18 3 0.02
19 3 0.02
20 2 0.01
21 131 0.78
22 10 0.06
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (21 bp):
AGGAAACCAGTAGTCTGCTGC
Found at i:18110919 original size:17 final size:17
Alignment explanation
Indices: 18110893--18110925 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
18110883 TTAGATCATT
*
18110893 TTAAATTTATTTAAATA
1 TTAAAATTATTTAAATA
18110910 TTAAAATTATTTAAAT
1 TTAAAATTATTTAAAT
18110926 TATAATTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TTAAAATTATTTAAATA
Found at i:18110922 original size:27 final size:27
Alignment explanation
Indices: 18110892--18110943 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
18110882 ATTAGATCAT
* *
18110892 TTTAAATT-TATTTAAATATTAAAATTA
1 TTTAAATTATAATTAAA-AATAAAATTA
18110919 TTTAAATTATAATTAAAAATAAAAT
1 TTTAAATTATAATTAAAAATAAAAT
18110944 CAATTTAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (27 bp):
TTTAAATTATAATTAAAAATAAAATTA
Found at i:18114647 original size:225 final size:220
Alignment explanation
Indices: 18114084--18114751 Score: 873
Period size: 225 Copynumber: 3.0 Consensus size: 220
18114074 TTTCTCATTC
*
18114084 TTTTTTTTTTTTTTTGAGAAACCCTCTCTCTTCTTAAAAGAAAAGAAACATGAGTGC-TT-CAAG
1 TTTTTTTTTTTTTTTGAGAAACCCTCTCTCTTGTTAAAAGAAAAGAAACATGAGTGCTTTACAAG
* *
18114147 CTATTTAAATTTCATGTGCTCCAAACATGCTTTCTTATATTATCGAAATGACTACTACTATAGAT
66 CTATTCAAATTTCATGTGCTCCAAACATGCTTTCTTATATTATCGAAATGACTACTGCTATAGAT
* ** *
18114212 TCTTCGAGCGGTTCGACCGAAATACGCCTGGTGTCGCCTAAGTCTGATACAGATACAAGAACGGA
131 TCTTCGAGCAG-TCGACCGAAATACGCC-AATGTCGCCTAAGTCTGATACAAATACAAGAACGGA
*
18114277 ATCAGGCTAATT--CTCTCTCT-CTCT
194 ATCAGGTTAATTCCCTCTCTCTCCTCT
* *
18114301 TTTTTTGTTTTTTTTTGAGAAACTCTCTCTCTCTTGTTAAAAGCAAAGAAACATGGGTGCTTTA-
1 TTTTTT-TTTTTTTTTGAGAAAC-C-CTCTCTCTTGTTAAAAGAAAAGAAACATGAGTGCTTTAC
* ** *
18114365 AATGCTATTCAAATTTCATATGCTCCAAACATGCTTTCTTATATTGCCGACATGACTACTGCTAT
63 AA-GCTATTCAAATTTCATGTGCTCCAAACATGCTTTCTTATATTATCGAAATGACTACTGCTAT
* * * * * * *
18114430 AGATGCTTCAAACACGTCGGA-TGAAATATGCCAACAGTCGCCTAAGTCTGATTCAAATACAAGA
127 AGATTCTTCGAGCA-GTC-GACCGAAATACGCCAA-TGTCGCCTAAGTCTGATACAAATACAAGA
18114494 ACGGAATCAGGTTAATTCCCTCTCTCTCCCTTCT
189 ACGGAATCAGGTTAATTCCCTCTCTCT-CC-TCT
* * *
18114528 TTTTTTTTTTTTTTTGAGAAACCCCCTCTATTGTTAAGAAAAAAAGAAACATGAGTGCTTTACAA
1 TTTTTTTTTTTTTTTGAGAAACCCTCTCTCTTGTTAA-AAGAAAAGAAACATGAGTGCTTTACAA
*
18114593 GCTATTCAAATTTCATGTGCTCCAAACATGCTTTTTTATATTATCGAAATGACTACTGCTATAGA
65 GCTATTCAAATTTCATGTGCTCCAAACATGCTTTCTTATATTATCGAAATGACTACTGCTATAGA
* * * * * *
18114658 TTCTTTGAGCGATTCGACCGAAATACGTCTAATGTCGCCTAAATCTGACACAAATACAAGAATGG
130 TTCTTCGAGC-AGTCGACCGAAATACG-CCAATGTCGCCTAAGTCTGATACAAATACAAGAACGG
18114723 AATCAGGTTAATTCCCTCTCTCTCTCTCT
193 AATCAGGTTAATTCCCTCTCTCTC-CTCT
18114752 CTCTCTGAAA
Statistics
Matches: 387, Mismatches: 44, Indels: 33
0.83 0.09 0.07
Matches are distributed among these distances:
217 6 0.02
218 16 0.04
219 1 0.00
220 31 0.08
221 4 0.01
222 119 0.31
223 3 0.01
224 26 0.07
225 149 0.39
226 23 0.06
227 9 0.02
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.35
Consensus pattern (220 bp):
TTTTTTTTTTTTTTTGAGAAACCCTCTCTCTTGTTAAAAGAAAAGAAACATGAGTGCTTTACAAG
CTATTCAAATTTCATGTGCTCCAAACATGCTTTCTTATATTATCGAAATGACTACTGCTATAGAT
TCTTCGAGCAGTCGACCGAAATACGCCAATGTCGCCTAAGTCTGATACAAATACAAGAACGGAAT
CAGGTTAATTCCCTCTCTCTCCTCT
Found at i:18114744 original size:447 final size:450
Alignment explanation
Indices: 18113901--18114747 Score: 1175
Period size: 447 Copynumber: 1.9 Consensus size: 450
18113891 AGGAATTTGA
* * **
18113901 GTGCTTTACATGCTATTCAAATTTCATGTGCTCCAAACATACTCTCGTACATTAACGAGGCCACT
1 GTGCTTTAAATGCTATTCAAATTTCATATGCTCCAAACATACTCTCGTACATTAACGACACCACT
** * * * * * *
18113966 ACAGCTAAAGATGCTTGGAACACTTTGGCCGAAATGTGCCAACAGCCGCCTATGTCTGATACAGA
66 ACAGCTAAAGATGCTTCAAACACGTCGGACGAAATATGCCAACAGCCGCCTAAGTCTGATACAAA
18114031 TACAAAAACGGAATCAGGTTAATTCCCTCTCTCTCTCTTTCTTTTTCTCATTCTTTTTTTTTTTT
131 TACAAAAACGGAATCAGGTTAATTCCCTCTCTCTCTC--TC---TTCTCA-TCTTTTTTTTTTTT
* * * *
18114096 TTTGAGAAACCCTCTCTCTTCTTAAAAGAAAAGAAACATGAGTGCTTCAAGCTATTTAAATTTCA
190 TTTGAGAAACCCCCTCTATTCTTAAAAAAAAAGAAACATGAGTGCTTCAAGCTATTCAAATTTCA
*
18114161 TGTGCTCCAAACATGCTTTCTTATATTATCGAAATGACTACTACTATAGATTCTTCGAGCGGTTC
255 TGTGCTCCAAACATGCTTTCTTATATTATCGAAATGACTACTACTATAGATTCTTCGAGCGATTC
** * * * *
18114226 GACCGAAATACGCCTGGTGTCGCCTAAGTCTGATACAGATACAAGAACGGAATCAGGCTAATTCT
320 GACCGAAATACGCCTAATGTCGCCTAAATCTGACACAAATACAAGAACGGAATCAGGCTAATTCC
18114291 CTCTCTCTCTTTTTTTGTTTTTTTTTGAGAAACTCTCTCTCTCTTGTTAAAAGCAAAGAAACATG
385 CTCTCTCTCTTTTTTTGTTTTTTTTTGAGAAACTCTCTCTCTCTTGTTAAAAGCAAAGAAACATG
18114356 G
450 G
* * * * ** **
18114357 GTGCTTTAAATGCTATTCAAATTTCATATGCTCCAAACATGCTTTCTTATATTGCCGACATGACT
1 GTGCTTTAAATGCTATTCAAATTTCATATGCTCCAAACATACTCTCGTACATTAACGACACCACT
* * * * *
18114422 ACTGCTATAGATGCTTCAAACACGTCGGATGAAATATGCCAACAGTCGCCTAAGTCTGATTCAAA
66 ACAGCTAAAGATGCTTCAAACACGTCGGACGAAATATGCCAACAGCCGCCTAAGTCTGATACAAA
*
18114487 TACAAGAACGGAATCAGGTTAATTCCCTCTCTCTC-C-C-T-TC-T-TTTTTTTTTTTTTTTGAG
131 TACAAAAACGGAATCAGGTTAATTCCCTCTCTCTCTCTCTTCTCATCTTTTTTTTTTTTTTTGAG
*
18114546 AAACCCCCTCTATTGTTAAGAAAAAAAGAAACATGAGTGCTTTACAAGCTATTCAAATTTCATGT
196 AAACCCCCTCTATTCTTAA-AAAAAAAGAAACATGAGTGC-TT-CAAGCTATTCAAATTTCATGT
* * *
18114611 GCTCCAAACATGCTTTTTTATATTATCGAAATGACTACTGCTATAGATTCTTTGAGCGATTCGAC
258 GCTCCAAACATGCTTTCTTATATTATCGAAATGACTACTACTATAGATTCTTCGAGCGATTCGAC
* * *
18114676 CGAAATACGTCTAATGTCGCCTAAATCTGACACAAATACAAGAATGGAATCAGGTTAATTCCCTC
323 CGAAATACGCCTAATGTCGCCTAAATCTGACACAAATACAAGAACGGAATCAGGCTAATTCCCTC
18114741 TCTCTCT
388 TCTCTCT
18114748 CTCTCTCTCT
Statistics
Matches: 344, Mismatches: 44, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
444 34 0.10
445 20 0.06
446 2 0.01
447 146 0.42
448 1 0.00
452 1 0.00
455 1 0.00
456 139 0.40
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (450 bp):
GTGCTTTAAATGCTATTCAAATTTCATATGCTCCAAACATACTCTCGTACATTAACGACACCACT
ACAGCTAAAGATGCTTCAAACACGTCGGACGAAATATGCCAACAGCCGCCTAAGTCTGATACAAA
TACAAAAACGGAATCAGGTTAATTCCCTCTCTCTCTCTCTTCTCATCTTTTTTTTTTTTTTTGAG
AAACCCCCTCTATTCTTAAAAAAAAAGAAACATGAGTGCTTCAAGCTATTCAAATTTCATGTGCT
CCAAACATGCTTTCTTATATTATCGAAATGACTACTACTATAGATTCTTCGAGCGATTCGACCGA
AATACGCCTAATGTCGCCTAAATCTGACACAAATACAAGAACGGAATCAGGCTAATTCCCTCTCT
CTCTTTTTTTGTTTTTTTTTGAGAAACTCTCTCTCTCTTGTTAAAAGCAAAGAAACATGG
Found at i:18120053 original size:17 final size:17
Alignment explanation
Indices: 18120031--18120068 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
18120021 GAATTATATA
*
18120031 ATATATT-TTTAATATTT
1 ATATATTATATAAT-TTT
18120048 ATATATTATATAATTTT
1 ATATATTATATAATTTT
18120065 ATAT
1 ATAT
18120069 TATGAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
ATATATTATATAATTTT
Found at i:18120071 original size:22 final size:24
Alignment explanation
Indices: 18120025--18120069 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
18120015 CTTCCTGAAT
*
18120025 TATATAATATATTTTTAATATTTA
1 TATATAATATAATTTTAATATTTA
*
18120049 TATATTATATAATTTT-ATATT
1 TATATAATATAATTTTAATATT
18120070 ATGAAAAATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (24 bp):
TATATAATATAATTTTAATATTTA
Found at i:18120232 original size:2 final size:2
Alignment explanation
Indices: 18120220--18120260 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
18120210 GGCTTTCGGT
* *
18120220 TA TA CA TA TA TA TA TA TA TA TA TG TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
18120261 TCAACTCTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:18133096 original size:3 final size:3
Alignment explanation
Indices: 18133083--18133202 Score: 57
Period size: 3 Copynumber: 36.7 Consensus size: 3
18133073 TCTTAGTTAC
* *
18133083 TTA TTA TTTA TTA TTTA TTA TTA CTA TCTA TTA ATA TATA TATA TT-
1 TTA TTA -TTA TTA -TTA TTA TTA TTA T-TA TTA TTA T-TA T-TA TTA
* * *
18133129 TT- TTA TT- TTCA TTT TTA TTA TTTA TCTG TTGA TATA CATA TTA TTA
1 TTA TTA TTA TT-A TTA TTA TTA -TTA T-TA TT-A T-TA -TTA TTA TTA
18133175 TTTA TCTA TTA TTA TTA TTA TTA TTA TT
1 -TTA T-TA TTA TTA TTA TTA TTA TTA TT
18133203 TATCTATTAA
Statistics
Matches: 93, Mismatches: 10, Indels: 28
0.71 0.08 0.21
Matches are distributed among these distances:
2 6 0.06
3 53 0.57
4 33 0.35
5 1 0.01
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:18133147 original size:46 final size:47
Alignment explanation
Indices: 18133090--18133256 Score: 129
Period size: 46 Copynumber: 3.6 Consensus size: 47
18133080 TACTTATTAT
* *
18133090 TTATTATTTATTATTACTATCTATTAATATATATA-TATTTTTTAT-T-
1 TTATT-TTTATTATTA-TATCTATTAATATACATATTATTATTTATCTA
* *
18133136 TTCATTTTTATTATT-TATCTGTTGATATACATATTATTATTTATCTA
1 TT-ATTTTTATTATTATATCTATTAATATACATATTATTATTTATCTA
* *
18133183 TTATTATTATTATTATTATTTATCT-AT-TA-ATAGTT-TTATTTATCTAA
1 TTATTTTTATTATTA-TATCTAT-TAATATACATA-TTATTATTTATCT-A
**
18133230 TTATTTTT-TTGGT-TATCTATTAATATA
1 TTATTTTTATTATTATATCTATTAATATA
18133257 TTTATCTTTT
Statistics
Matches: 99, Mismatches: 11, Indels: 23
0.74 0.08 0.17
Matches are distributed among these distances:
43 1 0.01
44 23 0.23
45 11 0.11
46 39 0.39
47 17 0.17
48 7 0.07
49 1 0.01
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (47 bp):
TTATTTTTATTATTATATCTATTAATATACATATTATTATTTATCTA
Found at i:18133221 original size:26 final size:26
Alignment explanation
Indices: 18133083--18133222 Score: 99
Period size: 26 Copynumber: 5.3 Consensus size: 26
18133073 TCTTAGTTAC
*
18133083 TTATTATTTATTATTTAT-TATTACTA
1 TTATTA-TTATTATTTATCTATTAATA
* * * * *
18133109 TCTATTAATATATATATAT-TTTTTATT
1 T-TATTATTAT-TATTTATCTATTAATA
* * *
18133136 TTCATTTTTATTATTTATCTGTTGATA
1 TT-ATTATTATTATTTATCTATTAATA
* *
18133163 -TACATATTATTATTTATCTATTATTA
1 TTA-TTATTATTATTTATCTATTAATA
18133189 TTATTATTATTATTTATCTATTAATA
1 TTATTATTATTATTTATCTATTAATA
18133215 GTT-TTATT
1 -TTATTATT
18133223 TATCTAATTA
Statistics
Matches: 88, Mismatches: 19, Indels: 14
0.73 0.16 0.12
Matches are distributed among these distances:
25 1 0.01
26 56 0.64
27 31 0.35
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (26 bp):
TTATTATTATTATTTATCTATTAATA
Found at i:18133239 original size:20 final size:19
Alignment explanation
Indices: 18133170--18133251 Score: 60
Period size: 20 Copynumber: 4.3 Consensus size: 19
18133160 ATATACATAT
* *
18133170 TATTATTTATCTA-TTAT-
1 TATTATTTTTTTATTTATC
*
18133187 TATTATTATTATTATTTATC
1 TATTATT-TTTTTATTTATC
**
18133207 TATTAATAGTTTTATTTATC
1 TATT-ATTTTTTTATTTATC
**
18133227 TAATTATTTTTTTGGTTATC
1 T-ATTATTTTTTTATTTATC
18133247 TATTA
1 TATTA
18133252 ATATATTTAT
Statistics
Matches: 50, Mismatches: 10, Indels: 8
0.74 0.15 0.12
Matches are distributed among these distances:
17 7 0.14
18 3 0.06
19 8 0.16
20 27 0.54
21 5 0.10
ACGTcount: A:0.28, C:0.05, G:0.04, T:0.63
Consensus pattern (19 bp):
TATTATTTTTTTATTTATC
Found at i:18133633 original size:6 final size:6
Alignment explanation
Indices: 18133622--18133685 Score: 67
Period size: 6 Copynumber: 9.8 Consensus size: 6
18133612 GATTGTTTAA
18133622 TATTTT TATTTTTT TATTTT TATTTT TATTTT TATTTTTT TATTTT CGT-TTTT
1 TATTTT TA--TTTT TATTTT TATTTT TATTTT TA--TTTT TATTTT --TATTTT
18133675 TATTTT TATTT
1 TATTTT TATTT
18133686 ATTTTATTTT
Statistics
Matches: 51, Mismatches: 0, Indels: 14
0.78 0.00 0.22
Matches are distributed among these distances:
5 1 0.02
6 33 0.65
7 4 0.08
8 13 0.25
ACGTcount: A:0.14, C:0.02, G:0.02, T:0.83
Consensus pattern (6 bp):
TATTTT
Found at i:18133641 original size:14 final size:14
Alignment explanation
Indices: 18133622--18133695 Score: 100
Period size: 14 Copynumber: 5.4 Consensus size: 14
18133612 GATTGTTTAA
18133622 TATTTTTATTTTTT
1 TATTTTTATTTTTT
18133636 TATTTTTA--TTTT
1 TATTTTTATTTTTT
18133648 TATTTTTATTTTTT
1 TATTTTTATTTTTT
**
18133662 TA-TTTTCGTTTTT
1 TATTTTTATTTTTT
18133675 TATTTTTATTTATTT
1 TATTTTTATTT-TTT
18133690 TATTTT
1 TATTTT
18133696 CTTTAAATAA
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
12 12 0.23
13 11 0.21
14 20 0.38
15 9 0.17
ACGTcount: A:0.15, C:0.01, G:0.01, T:0.82
Consensus pattern (14 bp):
TATTTTTATTTTTT
Found at i:18133647 original size:20 final size:20
Alignment explanation
Indices: 18133622--18133685 Score: 87
Period size: 20 Copynumber: 3.2 Consensus size: 20
18133612 GATTGTTTAA
18133622 TATTTTTATTTTTTTATTTT
1 TATTTTTATTTTTTTATTTT
18133642 TATTTTTATTTTTATT-TTTT
1 TATTTTTATTTTT-TTATTTT
**
18133662 TA-TTTTCGTTTTTTATTTT
1 TATTTTTATTTTTTTATTTT
18133681 TATTT
1 TATTT
18133686 ATTTTATTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
18 2 0.05
19 14 0.36
20 21 0.54
21 2 0.05
ACGTcount: A:0.14, C:0.02, G:0.02, T:0.83
Consensus pattern (20 bp):
TATTTTTATTTTTTTATTTT
Found at i:18133654 original size:27 final size:26
Alignment explanation
Indices: 18133622--18133699 Score: 122
Period size: 26 Copynumber: 2.9 Consensus size: 26
18133612 GATTGTTTAA
18133622 TATTTTTATTTTTTTATTTT-TATTTT
1 TATTTTTATTTTTTTATTTTCT-TTTT
18133648 TATTTTTATTTTTTTATTTTCGTTTTT
1 TATTTTTATTTTTTTATTTTC-TTTTT
18133675 TATTTTTATTTATTTTATTTTCTTT
1 TATTTTTATTT-TTTTATTTTCTTT
18133700 AAATAAAGTT
Statistics
Matches: 49, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
26 20 0.41
27 18 0.37
28 11 0.22
ACGTcount: A:0.14, C:0.03, G:0.01, T:0.82
Consensus pattern (26 bp):
TATTTTTATTTTTTTATTTTCTTTTT
Found at i:18133783 original size:61 final size:59
Alignment explanation
Indices: 18133720--18134138 Score: 454
Period size: 61 Copynumber: 7.1 Consensus size: 59
18133710 AAAAAAATAT
* * * *
18133720 TTTTCCTTAAAAATAAATTTTCAAAAAAAAAAGGTTTTGAGGAAAAGTTGAAAGTATTAA
1 TTTTCCTTGAAAATAAATTTTCAAAAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAA
* * **
18133780 TTTTCCTCGAAATTAAAAGTTTTC--AAAAAATATTTTTGAAAAAAAGTTGAAAGTATCAA
1 TTTTCCTTGAAAAT-AAA-TTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAA
* * * *
18133839 TTTTCCTTAAAAATAAATTTTCAAAAAAAGTTTTTTTTGAGGAAAAATTGAAAGTATCAA
1 TTTTCCTTGAAAATAAATTTTCAAAAAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAA
* * * *
18133899 TTTTCCTCGAAATTAAAGTTTC-CAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAA
1 TTTTCCTTGAAAATAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAA
* * ** *
18133956 TTTTTCTTAAAAATAAATTTTCAAAAAAGGTTTTTTTTTGAGGAAAAGTTGAAAGTATCAA
1 TTTTCCTTGAAAATAAATTTTCAAAAAA--AATATTTTTGAGGAAAAGTTGAAAGTATCAA
* * *
18134017 TTTTCCTTGAAAATAAGCTTTCCACAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAA
1 TTTTCCTTGAAAATAA-ATTTTCA-AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAA
* * * * * *
18134078 TTTTCCTCGAAATTAAAGTTTC-CAAAAAATA-TTTTGGGGAAAAATTGAAAGTATCAA
1 TTTTCCTTGAAAATAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAA
18134135 TTTT
1 TTTT
18134139 TCCTGCATAA
Statistics
Matches: 300, Mismatches: 48, Indels: 25
0.80 0.13 0.07
Matches are distributed among these distances:
57 70 0.23
58 22 0.07
59 44 0.15
60 71 0.24
61 78 0.26
62 10 0.03
63 5 0.02
ACGTcount: A:0.43, C:0.08, G:0.13, T:0.36
Consensus pattern (59 bp):
TTTTCCTTGAAAATAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAA
Found at i:18134008 original size:118 final size:116
Alignment explanation
Indices: 18133718--18134138 Score: 508
Period size: 118 Copynumber: 3.6 Consensus size: 116
18133708 TTAAAAAAAT
***** *
18133718 ATTTTTCCTTAAAAATAAATTTTCAAAAAAAAAAGGTTTTGAGGAAAAGTTGAAAGTATTAATTT
1 ATTTTT-CTTAAAAATAAATTTTC-AAAAAAGTTTTTTTTGAGGAAAAGTTGAAAGTATCAATTT
* **
18133783 TCCTCGAAATTAAAAGTTTTCAAAAAATATTTTTGAAAAAAAGTTGAAAGTATCA
64 TCCTCGAAATT-AAAGTTTCCAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCA
* *
18133838 ATTTTCCTTAAAAATAAATTTTCAAAAAAAGTTTTTTTTGAGGAAAAATTGAAAGTATCAATTTT
1 ATTTTTCTTAAAAATAAATTTTC-AAAAAAGTTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTT
18133903 CCTCGAAATTAAAGTTTCCAAAAAATATTTTTGGGAAAAGTTGAAAGTATCA
65 CCTCGAAATTAAAGTTTCCAAAAAATATTTTTGGGAAAAGTTGAAAGTATCA
18133955 ATTTTTCTTAAAAATAAATTTTCAAAAAAGGTTTTTTTTTGAGGAAAAGTTGAAAGTATCAATTT
1 ATTTTTCTTAAAAATAAATTTTCAAAAAA-G-TTTTTTTTGAGGAAAAGTTGAAAGTATCAATTT
* *
18134020 TCCTTGAAAAT-AAGCTTTCCACAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCA
64 TCCTCGAAATTAAAG-TTT-C-C-AAAAAATATTTTT-GGGAAAAGTTGAAAGTATCA
* ** * * * * *
18134077 ATTTTCCTCGAAATTAAAGTTTCCAAAAAA---TATTTTGGGGAAAAATTGAAAGTATCAATTTT
1 ATTTTTCTTAAAAATAAA-TTTTCAAAAAAGTTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTT
18134139 TCCTGCATAA
Statistics
Matches: 270, Mismatches: 23, Indels: 18
0.87 0.07 0.06
Matches are distributed among these distances:
116 6 0.02
117 43 0.16
118 95 0.35
119 63 0.23
120 6 0.02
121 13 0.05
122 34 0.13
123 10 0.04
ACGTcount: A:0.43, C:0.08, G:0.13, T:0.36
Consensus pattern (116 bp):
ATTTTTCTTAAAAATAAATTTTCAAAAAAGTTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTC
CTCGAAATTAAAGTTTCCAAAAAATATTTTTGGGAAAAGTTGAAAGTATCA
Found at i:18134104 original size:179 final size:176
Alignment explanation
Indices: 18133754--18134140 Score: 537
Period size: 179 Copynumber: 2.2 Consensus size: 176
18133744 AAAAAAAAGG
* * * *
18133754 TTTTGAGGAAAAGTTGAAAGTATTAATTTTCCTCGAAATTAAAAGTTTTCAAAAAATATTTTTGA
1 TTTTG-GGAAAAGTTGAAAGTATCAATTTTTCTCAAAAATAAAAGTTTTCAAAAAATATTTTTGA
* * *
18133819 AAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAGTTTTTTTTGAGGAAA
65 AAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAAAGATATTTTTGAGGAAA
18133884 AATTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTCCAAAAAATAT
130 AATTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTCCAAAAAATAT
* *
18133931 TTTTGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAA-TTTTCAAAAAAGGTTTTTTTT
1 TTTTGGGAAAAGTTGAAAGTATCAATTTTTCTCAAAAATAAAAGTTTTCAAAAAA----TATTTT
** * * *
18133994 TGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCCACAAAAAA-ATATTTTTGG
62 TGAAAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAA-ATTTCCA-AAAAAAGATATTTTTGA
*
18134058 GGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTCCAAAAAATAT
125 GGAAAAATTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTCCAAAAAATAT
* *
18134110 TTTGGGGAAAAATTGAAAGTATCAATTTTTC
1 TTTTGGGAAAAGTTGAAAGTATCAATTTTTC
18134141 CTGCATAAAA
Statistics
Matches: 187, Mismatches: 17, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
174 11 0.06
175 3 0.02
176 29 0.16
177 5 0.03
178 41 0.22
179 92 0.49
180 6 0.03
ACGTcount: A:0.42, C:0.08, G:0.13, T:0.37
Consensus pattern (176 bp):
TTTTGGGAAAAGTTGAAAGTATCAATTTTTCTCAAAAATAAAAGTTTTCAAAAAATATTTTTGAA
AAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAAAGATATTTTTGAGGAAAA
ATTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTCCAAAAAATAT
Found at i:18135351 original size:7 final size:7
Alignment explanation
Indices: 18135339--18135363 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
18135329 CTTCTTCCCA
18135339 CAAATCT
1 CAAATCT
18135346 CAAATCT
1 CAAATCT
18135353 CAAATCT
1 CAAATCT
18135360 CAAA
1 CAAA
18135364 CCTCGAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (7 bp):
CAAATCT
Found at i:18142889 original size:23 final size:23
Alignment explanation
Indices: 18142859--18142905 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
18142849 CAGTGGTGAA
18142859 TTCAAGATTTTTTTAAAAGTATG
1 TTCAAGATTTTTTTAAAAGTATG
18142882 TTCAAGATTTTTTTAAAAGTATG
1 TTCAAGATTTTTTTAAAAGTATG
18142905 T
1 T
18142906 ATTTATAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.04, G:0.13, T:0.49
Consensus pattern (23 bp):
TTCAAGATTTTTTTAAAAGTATG
Found at i:18145040 original size:6 final size:6
Alignment explanation
Indices: 18145031--18145059 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
18145021 TTCATTGAAC
18145031 TTGATT TTGATT TTGATT TTGATT TTGAT
1 TTGATT TTGATT TTGATT TTGATT TTGAT
18145060 GGGCTGAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.17, T:0.66
Consensus pattern (6 bp):
TTGATT
Found at i:18149853 original size:10 final size:10
Alignment explanation
Indices: 18149831--18149929 Score: 71
Period size: 10 Copynumber: 10.2 Consensus size: 10
18149821 TCCTTAAAAA
*
18149831 TTTTAAAAGT
1 TTTTAAAATT
*
18149841 TTTTATAA-T
1 TTTTAAAATT
*
18149850 TTTTAAATTT
1 TTTTAAAATT
*
18149860 TTTTAAAAAT
1 TTTTAAAATT
**
18149870 TTTT-GTATT
1 TTTTAAAATT
18149879 TTTTAAAATT
1 TTTTAAAATT
*
18149889 TTTT-GAA-T
1 TTTTAAAATT
**
18149897 TTTTAAAAAC
1 TTTTAAAATT
18149907 TTTTAAAATT
1 TTTTAAAATT
*
18149917 TTTAAAAAATT
1 TTT-TAAAATT
18149928 TT
1 TT
18149930 CAAAGTTATT
Statistics
Matches: 68, Mismatches: 16, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
8 5 0.07
9 17 0.25
10 38 0.56
11 8 0.12
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.59
Consensus pattern (10 bp):
TTTTAAAATT
Found at i:18149862 original size:19 final size:18
Alignment explanation
Indices: 18149827--18149923 Score: 86
Period size: 18 Copynumber: 5.2 Consensus size: 18
18149817 AACATCCTTA
* *
18149827 AAAATTTTAAAAGTTTTT
1 AAAATTTTTAAATTTTTT
*
18149845 ATAATTTTTAAATTTTTTT
1 AAAATTTTTAAA-TTTTTT
**
18149864 AAAAATTTTTGTATTTTTT
1 -AAAATTTTTAAATTTTTT
* *
18149883 AAAATTTTTTGAATTTTTA
1 AAAA-TTTTTAAATTTTTT
* *
18149902 AAAACTTTTAAAATTTTT
1 AAAATTTTTAAATTTTTT
18149920 AAAA
1 AAAA
18149924 AATTTTCAAA
Statistics
Matches: 64, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
18 28 0.44
19 27 0.42
20 9 0.14
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (18 bp):
AAAATTTTTAAATTTTTT
Found at i:18149864 original size:29 final size:29
Alignment explanation
Indices: 18149831--18149929 Score: 103
Period size: 29 Copynumber: 3.4 Consensus size: 29
18149821 TCCTTAAAAA
* *
18149831 TTTTAAAAGTTTTTATAATTTTTAAATTT
1 TTTTAAAAATTTTTATAATTTTTAAAATT
* *
18149860 TTTTAAAAATTTTTGTATTTTTTAAAATT
1 TTTTAAAAATTTTTATAATTTTTAAAATT
* * *
18149889 TTTT--GAATTTTTAAAAACTTTTAAAATT
1 TTTTAAAAATTTTT-ATAATTTTTAAAATT
*
18149917 TTTAAAAAATTTT
1 TTTTAAAAATTTT
18149930 CAAAGTTATT
Statistics
Matches: 56, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
27 7 0.12
28 14 0.25
29 29 0.52
30 6 0.11
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.59
Consensus pattern (29 bp):
TTTTAAAAATTTTTATAATTTTTAAAATT
Found at i:18149924 original size:19 final size:18
Alignment explanation
Indices: 18149824--18149929 Score: 86
Period size: 19 Copynumber: 5.6 Consensus size: 18
18149814 TAAAACATCC
18149824 TTAAAAATTTTAAAAGTTT
1 TTAAAAATTTTAAAA-TTT
* * *
18149843 TTATAATTTTTAAATTTTT
1 TTAAAAATTTTAAA-ATTT
** *
18149862 TTAAAAATTTTTGTATTTT
1 TTAAAAA-TTTTAAAATTT
* **
18149881 TTAAAATTTTTTGAATTT
1 TTAAAAATTTTAAAATTT
18149899 TTAAAAACTTTTAAAATTT
1 TTAAAAA-TTTTAAAATTT
18149918 TTAAAAAATTTT
1 TT-AAAAATTTT
18149930 CAAAGTTATT
Statistics
Matches: 69, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
18 14 0.20
19 45 0.65
20 10 0.14
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.57
Consensus pattern (18 bp):
TTAAAAATTTTAAAATTT
Found at i:18151935 original size:188 final size:188
Alignment explanation
Indices: 18151589--18151967 Score: 611
Period size: 188 Copynumber: 2.0 Consensus size: 188
18151579 TTGTTTTAGG
18151589 AATAAAGATAGAGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAA
1 AATAAAGATAGAGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAA
*
18151654 AATATATTTAAAAATAAAAAATTAATTAAAATTATAATTAAAAAGTAGGTTGATGTTGGTGTTAA
66 AATATATTTAAAAATAAAAAATTAATTAAAATTATAATTAAAAAATAGGTTGATGTTGGTGTTAA
* * * *
18151719 GTGTGTTGTAAGTCAAATAACCTTTTTAGATCTTTAGGTGTTGT-CCAGCTTTGACTAA
131 GTGTGTTATAAGTCAAATAACATTTTTAGATCTTTAGGTATTGTCCCAGC-CTGACTAA
* * * *
18151777 AATAAAGATAGAGAAATGATGAATAATGGAGCCTAGTCCATTTGATCTCAATGAATACATTTTAA
1 AATAAAGATAGAGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAA
18151842 AATATATTTAAAAATAAAAAATTAATTAAAATTATAATTAAAAAAATAGGTTGATAG-TGGTGTT
66 AATATATTTAAAAATAAAAAATTAATTAAAATTATAATT-AAAAAATAGGTTGAT-GTTGGTGTT
**
18151906 AAGTGTGTTAT-AGTCATGTAACATTTTTAGATCTTTAGGTATTGTCCCAGCCTGACTAA
129 AAGTGTGTTATAAGTCAAATAACATTTTTAGATCTTTAGGTATTGTCCCAGCCTGACTAA
18151965 AAT
1 AAT
18151968 CGACGCTGCT
Statistics
Matches: 177, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
188 140 0.79
189 36 0.20
190 1 0.01
ACGTcount: A:0.41, C:0.09, G:0.16, T:0.34
Consensus pattern (188 bp):
AATAAAGATAGAGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAA
AATATATTTAAAAATAAAAAATTAATTAAAATTATAATTAAAAAATAGGTTGATGTTGGTGTTAA
GTGTGTTATAAGTCAAATAACATTTTTAGATCTTTAGGTATTGTCCCAGCCTGACTAA
Found at i:18152065 original size:503 final size:499
Alignment explanation
Indices: 18150781--18152779 Score: 3379
Period size: 498 Copynumber: 4.0 Consensus size: 499
18150771 TTGTTTCGGG
* * * *
18150781 AATAAAGATA-AGAAAGGATG-ATAACGGAGCCCA-ACTCATTCGATCTCAATGAATACATTTTA
1 AATAAAGATAGAGAAATGATGAATAATGGAGCCCAGTC-CATTCGACCTCAATGAATACATTTTA
*
18150843 AAATATATTTAAAAATAAAAAATTAATTAAAATTATAATTAAAAAAATAGATTGATAGTGGTGTT
65 AAATATATTTAAAAATAAAAAATTAATTAAAATTATAATTAAAAAAATAGGTTGATAGTGGTGTT
*
18150908 AAGTGTGTTGTAGTCATGTAACTTTTTTAGATCTTTAGGTGTTGTCTAGCCTGACTAAAATCGAC
130 AAGTGTGTTGTAGTCATGTAAC-TTTTTAGATCTTTAGGTGTTGTCCAGCCTGACTAAAATCGAC
* *
18150973 GTTGCTTAGGAGGTAACCCAAATTTCATTATCATTGTTGATGCTTTTGTTATTTGTTTTCTTTAT
194 GCTGCTTAGGAGGTAACCCAAGTTTCATTATCATTGTTGATGCTTTTGTTATTTGTTTTCTTTAT
* * * *
18151038 TTTGTTAGAACATATTTACCTTGATCTTACTTTATTTATTTCA-TTTATTTAAGGAATAAAGATA
259 TTTGTTAGAACATGTTTACCTTGATCTTACTTTGTTTATTTCATTTTGTTTTAGGAATAAAGATA
*
18151102 GAGAAATGATGAATAATGGAGCCCAACCCATTCGACCTCAATGAATACATTTTAAAATATATTTA
324 GAGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAAAATATATTTA
18151167 AAAATAAAAAA-TAA-TAAAATTATAATTAAAAAGTAGGTTGATGCTGGTGTTAAGTGTGTTGTA
389 AAAATAAAAAATTAATTAAAATTATAATTAAAAAGTAGGTTGATGCTGGTGTTAAGTGTGTTGTA
* *
18151230 ATCACATAACCTTTTTAGATCTTTAGGTGTTGTCCAGCTTGAATAA
454 GTCACATAACCTTTTTAGATCTTTAGGTGTTGTCCAGCTTGACTAA
* *
18151276 AATAAAGATAGAGAAATGATGAATAATGGAGTCGAGTCCATTCGACCTCAATGAATACATTTTAA
1 AATAAAGATAGAGAAATGATGAATAATGGAGCCCAGTCCATTCGACCTCAATGAATACATTTTAA
18151341 AATATATTTAAAAAT-AAAAATTAATTAAAATTATAATTAAAAAAATAGGTTGATAGTGGTGTTA
66 AATATATTTAAAAATAAAAAATTAATTAAAATTATAATTAAAAAAATAGGTTGATAGTGGTGTTA
* * * * *
18151405 AGTGTGTTGTAGTCATGCAACCTTTTAGATTTTTAGGTGTTGTCCAACCTAACTAAAATCGACGC
131 AGTGTGTTGTAGTCATGTAACTTTTTAGATCTTTAGGTGTTGTCCAGCCTGACTAAAATCGACGC
18151470 TGCTTAGGAGGTAAACCCAAGTTTCATTATCATTGTTGATGCTTTTGTTATTTGTTTTCTTTATT
196 TGCTTAGGAGGT-AACCCAAGTTTCATTATCATTGTTGATGCTTTTGTTATTTGTTTTCTTTATT
18151535 TTGTTAGAACATGTTTACCTTGATCTTACTTTGTTTATTTCATTTTGTTTTAGGAATAAAGATAG
260 TTGTTAGAACATGTTTACCTTGATCTTACTTTGTTTATTTCATTTTGTTTTAGGAATAAAGATAG
18151600 AGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAAAATATATTTAA
325 AGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAAAATATATTTAA
*
18151665 AAATAAAAAATTAATTAAAATTATAATTAAAAAGTAGGTTGATGTTGGTGTTAAGTGTGTTGTAA
390 AAATAAAAAATTAATTAAAATTATAATTAAAAAGTAGGTTGATGCTGGTGTTAAGTGTGTTGT-A
*
18151730 GTCAAATAACCTTTTTAGATCTTTAGGTGTTGTCCAGCTTTGACTAA
454 GTCACATAACCTTTTTAGATCTTTAGGTGTTGTCCAGC-TTGACTAA
* * *
18151777 AATAAAGATAGAGAAATGATGAATAATGGAGCCTAGTCCATTTGATCTCAATGAATACATTTTAA
1 AATAAAGATAGAGAAATGATGAATAATGGAGCCCAGTCCATTCGACCTCAATGAATACATTTTAA
18151842 AATATATTTAAAAATAAAAAATTAATTAAAATTATAATTAAAAAAATAGGTTGATAGTGGTGTTA
66 AATATATTTAAAAATAAAAAATTAATTAAAATTATAATTAAAAAAATAGGTTGATAGTGGTGTTA
* *
18151907 AGTGTGTTATAGTCATGTAACATTTTTAGATCTTTAGGTATTGTCCCAGCCTGACTAAAATCGAC
131 AGTGTGTTGTAGTCATGTAAC-TTTTTAGATCTTTAGGTGTTGT-CCAGCCTGACTAAAATCGAC
*
18151972 GCTGCTTAGGAGGTAACCCAAGTTTCATTATCATTGTTGATGCTTTTGTTATCTGTTTTCTTTAT
194 GCTGCTTAGGAGGTAACCCAAGTTTCATTATCATTGTTGATGCTTTTGTTATTTGTTTTCTTTAT
* *
18152037 TTTGTTAGAACACGTTCACCTTGATCTTACTTTGTTTATTTCATTTTGTTTTAGGAATAAAGATA
259 TTTGTTAGAACATGTTTACCTTGATCTTACTTTGTTTATTTCATTTTGTTTTAGGAATAAAGATA
18152102 GAGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAAAATATATTTA
324 GAGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAAAATATATTTA
18152167 AAAAT-AAAAATTAATTAAAATTATAATTAAAAAGTAGGTTGATGCTGGTGTTAAGTGTGTTGTA
389 AAAATAAAAAATTAATTAAAATTATAATTAAAAAGTAGGTTGATGCTGGTGTTAAGTGTGTTGTA
*
18152231 GTCACATAACCTTTTTAGATCTTTAGGTGTTGTCCAGCTTAACTAA
454 GTCACATAACCTTTTTAGATCTTTAGGTGTTGTCCAGCTTGACTAA
*
18152277 AATAAAGATAGAGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAA
1 AATAAAGATAGAGAAATGATGAATAATGGAGCCCAGTCCATTCGACCTCAATGAATACATTTTAA
*
18152342 AATATATTTAAAAATAAAAAATTAATT-AAACTATAATTAAAAAAATAGGTTGATAGTGGTGTTA
66 AATATATTTAAAAATAAAAAATTAATTAAAATTATAATTAAAAAAATAGGTTGATAGTGGTGTTA
* *
18152406 AGTGTGTTGTAGTCATGTAACCTTTTTAGATCTTTAGATGTTGTCCAGCCTGACTAAAATCGGCG
131 AGTGTGTTGTAGTCATGTAA-CTTTTTAGATCTTTAGGTGTTGTCCAGCCTGACTAAAATCGACG
* *
18152471 CTGCTTAGGAGGTAACCCAAGTTTCATTATCATTGTTGATGTTTTTGTTATTTGTTTTCTTTAAT
195 CTGCTTAGGAGGTAACCCAAGTTTCATTATCATTGTTGATGCTTTTGTTATTTGTTTTCTTTATT
*
18152536 TTGTTAGAACATGTTTACCTTGATCTTACTTTGTTTATTTCATTTTGTTTTAGGAACAAAGATAG
260 TTGTTAGAACATGTTTACCTTGATCTTACTTTGTTTATTTCATTTTGTTTTAGGAATAAAGATAG
* *
18152601 AGAAATGATGAATAATGGAGCCCAGTCCATTCAACCTCAATGAATACATTTTAAAATATATTTAA
325 AGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAAAATATATTTAA
* * * *
18152666 AAATAAAAAATTAATTAAAACTATAATTAAAAAAATAAGTTGATAG-TGGTGTTAAATGTGTTGT
390 AAATAAAAAATTAATTAAAATTATAATT-AAAAAGTAGGTTGAT-GCTGGTGTTAAGTGTGTTGT
* ** * *
18152730 AGTTATGTTACCTTTTTAGATCTTTAGGTGTTATCCAGCTTGACTAA
453 AGTCACATAACCTTTTTAGATCTTTAGGTGTTGTCCAGCTTGACTAA
18152777 AAT
1 AAT
18152780 CGACGCTGCT
Statistics
Matches: 1420, Mismatches: 68, Indels: 27
0.94 0.04 0.02
Matches are distributed among these distances:
495 60 0.04
496 168 0.12
497 145 0.10
498 215 0.15
499 144 0.10
500 207 0.15
501 122 0.09
502 125 0.09
503 202 0.14
504 32 0.02
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.37
Consensus pattern (499 bp):
AATAAAGATAGAGAAATGATGAATAATGGAGCCCAGTCCATTCGACCTCAATGAATACATTTTAA
AATATATTTAAAAATAAAAAATTAATTAAAATTATAATTAAAAAAATAGGTTGATAGTGGTGTTA
AGTGTGTTGTAGTCATGTAACTTTTTAGATCTTTAGGTGTTGTCCAGCCTGACTAAAATCGACGC
TGCTTAGGAGGTAACCCAAGTTTCATTATCATTGTTGATGCTTTTGTTATTTGTTTTCTTTATTT
TGTTAGAACATGTTTACCTTGATCTTACTTTGTTTATTTCATTTTGTTTTAGGAATAAAGATAGA
GAAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAAAATATATTTAAA
AATAAAAAATTAATTAAAATTATAATTAAAAAGTAGGTTGATGCTGGTGTTAAGTGTGTTGTAGT
CACATAACCTTTTTAGATCTTTAGGTGTTGTCCAGCTTGACTAA
Found at i:18152855 original size:314 final size:314
Alignment explanation
Indices: 18152280--18153092 Score: 1407
Period size: 314 Copynumber: 2.6 Consensus size: 314
18152270 TAACTAAAAT
18152280 AAAGATAGAGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAAAAT
1 AAAGATAGAGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAAAAT
18152345 ATATTTAAAAATAAAAAATTAATT-AAACTATAATTAAAAAAATAGGTTGATAGTGGTGTTAAGT
66 ATATTTAAAAATAAAAAATTAATTAAAACTATAATTAAAAAAATAGGTTGATAGTGGTGTTAAGT
* * *
18152409 GTGTTGTAGTCATGTAACCTTTTTAGATCTTTAGATGTTGTCCAGCCTGACTAAAATCGGCGCTG
131 GTGTTGTAGTCATGTAACCTTTTTAGATCTTTAGGTGTTGTCCAGCTTGACTAAAATCGACGCTG
18152474 CTTAGGAGGTAACCCAAGTTTCATTATCATTGTTGATGTTTTTGTTATTTGTTTTCTTTAATTTG
196 CTTAGGAGGTAACCCAAGTTTCATTATCATTGTTGATGTTTTTGTTATTTGTTTTCTTTAATTTG
18152539 TTAGAACATGTTTACCTTGATCTTACTTTGTTTATTTCATTTTGTTTTAGGAAC
261 TTAGAACATGTTTACCTTGATCTTACTTTGTTTATTTCATTTTGTTTTAGGAAC
* *
18152593 AAAGATAGAGAAATGATGAATAATGGAGCCCAGTCCATTCAACCTCAATGAATACATTTTAAAAT
1 AAAGATAGAGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAAAAT
* *
18152658 ATATTTAAAAATAAAAAATTAATTAAAACTATAATTAAAAAAATAAGTTGATAGTGGTGTTAAAT
66 ATATTTAAAAATAAAAAATTAATTAAAACTATAATTAAAAAAATAGGTTGATAGTGGTGTTAAGT
* * *
18152723 GTGTTGTAGTTATGTTACCTTTTTAGATCTTTAGGTGTTATCCAGCTTGACTAAAATCGACGCTG
131 GTGTTGTAGTCATGTAACCTTTTTAGATCTTTAGGTGTTGTCCAGCTTGACTAAAATCGACGCTG
* * *
18152788 CTTCGGAGGTAACCCAAGTTTCATTATCATTGTTGATGTTTTTGTTATTTGTTTTTTTTATTTTG
196 CTTAGGAGGTAACCCAAGTTTCATTATCATTGTTGATGTTTTTGTTATTTGTTTTCTTTAATTTG
*
18152853 TTAGAACATGTTTACCTTGATCTTACTTTGTTTATTTCATTTTGTTTTAGGAAT
261 TTAGAACATGTTTACCTTGATCTTACTTTGTTTATTTCATTTTGTTTTAGGAAC
* *
18152907 AAAGATAGAGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTTAATGAATACATTTTAAAAC
1 AAAGATAGAGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAAAAT
*
18152972 ATATTTAAAAATAAAAAATTAATTAAAATTATAATT-AAAAAATAGGTTGAT-GCTGGTGTTAAG
66 ATATTTAAAAATAAAAAATTAATTAAAACTATAATTAAAAAAATAGGTTGATAG-TGGTGTTAAG
** * *
18153035 TGTGTTGTAGTCAAATAACCTTTTCAGATCTTTAGGTGTTGTCCAGTTTGACTAAAAT
130 TGTGTTGTAGTCATGTAACCTTTTTAGATCTTTAGGTGTTGTCCAGCTTGACTAAAAT
18153093 AAAGATAGAG
Statistics
Matches: 470, Mismatches: 28, Indels: 4
0.94 0.06 0.01
Matches are distributed among these distances:
312 1 0.00
313 161 0.34
314 308 0.66
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (314 bp):
AAAGATAGAGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAAAAT
ATATTTAAAAATAAAAAATTAATTAAAACTATAATTAAAAAAATAGGTTGATAGTGGTGTTAAGT
GTGTTGTAGTCATGTAACCTTTTTAGATCTTTAGGTGTTGTCCAGCTTGACTAAAATCGACGCTG
CTTAGGAGGTAACCCAAGTTTCATTATCATTGTTGATGTTTTTGTTATTTGTTTTCTTTAATTTG
TTAGAACATGTTTACCTTGATCTTACTTTGTTTATTTCATTTTGTTTTAGGAAC
Found at i:18153218 original size:186 final size:186
Alignment explanation
Indices: 18152904--18153278 Score: 653
Period size: 186 Copynumber: 2.0 Consensus size: 186
18152894 TTGTTTTAGG
18152904 AATAAAGATAGAGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTTAATGAATACATTTTAA
1 AATAAAGATAGAGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTTAATGAATACATTTTAA
*
18152969 AACATATTTAAAAATAAAAAATTAATTAAAATTATAATTAAAAAATAGGTTGATGCTGGTGTTAA
66 AACATATTTAAAAATAAAAAATTAATTAAAATTATAATTAAAAAATAGGTTGATACTGGTGTTAA
* *
18153034 GTGTGTTGTAGTCAAATAACC-TTTTCAGATCTTTAGGTGTTGTCCAGTTTGACTAA
131 GTGTGTTGTAGTCAAATAACCATTTT-AGATCTTTAGGTGTTATCCAGCTTGACTAA
*
18153090 AATAAAGATAGAGAAATGATGAATAATGGAGCCTAGCCCATTCGACCTTAATGAATACATTTTAA
1 AATAAAGATAGAGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTTAATGAATACATTTTAA
* * * *
18153155 AATATATTTTAAAATAAAAAATTAATTAAAATTATAATTTAAAAGTAGGTTGATACTGGTGTTAA
66 AACATATTTAAAAATAAAAAATTAATTAAAATTATAATTAAAAAATAGGTTGATACTGGTGTTAA
*
18153220 GTGTGTTGTAGTCATATAACCATTTTAGATCTTTAGGTGTTATCCAGCTTGACTAA
131 GTGTGTTGTAGTCAAATAACCATTTTAGATCTTTAGGTGTTATCCAGCTTGACTAA
18153276 AAT
1 AAT
18153279 CGACGCTACT
Statistics
Matches: 179, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
186 175 0.98
187 4 0.02
ACGTcount: A:0.40, C:0.10, G:0.16, T:0.34
Consensus pattern (186 bp):
AATAAAGATAGAGAAATGATGAATAATGGAGCCCAGCCCATTCGACCTTAATGAATACATTTTAA
AACATATTTAAAAATAAAAAATTAATTAAAATTATAATTAAAAAATAGGTTGATACTGGTGTTAA
GTGTGTTGTAGTCAAATAACCATTTTAGATCTTTAGGTGTTATCCAGCTTGACTAA
Found at i:18153346 original size:813 final size:813
Alignment explanation
Indices: 18151780--18153457 Score: 2838
Period size: 813 Copynumber: 2.1 Consensus size: 813
18151770 TGACTAAAAT
* ** *
18151780 AAAGATAGAGAAATGATGAATAATGGAGCCTAGTCCATTTGATCTCAATGAATACATTTTAAAAT
1 AAAGATAGAGAAATGATGAATAATGGAGCCCAGTCCATTCAACCTCAATGAATACATTTTAAAAT
* * *
18151845 ATATTTAAAAATAAAAAATTAATTAAAATTATAATTAAAAAAATAGGTTGATAGTGGTGTTAAGT
66 ATATTTAAAAATAAAAAATTAATTAAAACTATAATTAAAAAAATAAGTTGATAGTGGTGTTAAAT
*
18151910 GTGTTATAGTCATGTAACATTTTTAGATCTTTAGGTATTGTCCCAGCCTGACTAAAATCGACGCT
131 GTGTTATAGTCATGTAACATTTTTAGATCTTTAGGTATTATCCCAGCCTGACTAAAATCGACGCT
18151975 GCTTAGGAGGTAACCCAAGTTTCATTATCATTGTTGATGCTTTTGTTATCTGTTTTCTTTATTTT
196 GCTTAGGAGGTAACCCAAGTTTCATTATCATTGTTGATGCTTTTGTTATCTGTTTTCTTTATTTT
18152040 GTTAGAACACGTTCACCTTGATCTTACTTTGTTTATTTCATTTTGTTTTAGGAATAAAGATAGAG
261 GTTAGAACACGTTCACCTTGATCTTACTTTGTTTATTTCATTTTGTTTTAGGAATAAAGATAGAG
*
18152105 AAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAAAATATATTTAAAA
326 AAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAAAACATATTTAAAA
*
18152170 ATAAAAATTAATTAAAATTATAATTAAAAAGTAGGTTGATGCTGGTGTTAAGTGTGTTGTAGTCA
391 ATAAAAATTAATTAAAATTATAATTAAAAAATAGGTTGATGCTGGTGTTAAGTGTGTTGTAGTCA
* *
18152235 CATAACCTTTTTAGATCTTTAGGTGTTGTCCAGCTTAACTAAAATAAAGATAGAGAAATGATGAA
456 AATAACCTTTTCAGATCTTTAGGTGTTGTCCAGCTTAACTAAAATAAAGATAGAGAAATGATGAA
18152300 TAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAAAATATATTTAAAAATAAAAAATT
521 TAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAAAATATATTTAAAAATAAAAAATT
* * *
18152365 AATTAAACTATAATTAAAAAAATAGGTTGATAGTGGTGTTAAGTGTGTTGTAGTCATGTAACCTT
586 AATTAAACTATAATTAAAAAAATAGGTTGATACTGGTGTTAAGTGTGTTGTAGTCATATAACCAT
* * * *
18152430 TTTAGATCTTTAGATGTTGTCCAGCCTGACTAAAATCGGCGCTGCTTAGGAGGTAACCCAAGTTT
651 TTTAGATCTTTAGATGTTATCCAGCCTGACTAAAATCGACGCTACTTAGGAGCTAACCCAAGTTT
* * *
18152495 CATTATCATTGTTGATGTTTTTGTTATTTGTTTTCTTTAATTTGTTAGAACATGTTTACCTTGAT
716 CATTATCATTGTTGATGCTTTTGTTATTTGTTTTCTTTAATTTGTTAGAAAAGGTTTACCTTGAT
* *
18152560 CTTACTTTGTTTATTTCATTTTGTTTTAGGAAC
781 CTTACTTTATTTATTTCATTTTGTTTTAGAAAC
18152593 AAAGATAGAGAAATGATGAATAATGGAGCCCAGTCCATTCAACCTCAATGAATACATTTTAAAAT
1 AAAGATAGAGAAATGATGAATAATGGAGCCCAGTCCATTCAACCTCAATGAATACATTTTAAAAT
18152658 ATATTTAAAAATAAAAAATTAATTAAAACTATAATTAAAAAAATAAGTTGATAGTGGTGTTAAAT
66 ATATTTAAAAATAAAAAATTAATTAAAACTATAATTAAAAAAATAAGTTGATAGTGGTGTTAAAT
* * * * * *
18152723 GTGTTGTAGTTATGTTACCTTTTTAGATCTTTAGGTGTTAT-CCAGCTTGACTAAAATCGACGCT
131 GTGTTATAGTCATGTAACATTTTTAGATCTTTAGGTATTATCCCAGCCTGACTAAAATCGACGCT
* * * *
18152787 GCTTCGGAGGTAACCCAAGTTTCATTATCATTGTTGATGTTTTTGTTATTTGTTTTTTTTATTTT
196 GCTTAGGAGGTAACCCAAGTTTCATTATCATTGTTGATGCTTTTGTTATCTGTTTTCTTTATTTT
* *
18152852 GTTAGAACATGTTTACCTTGATCTTACTTTGTTTATTTCATTTTGTTTTAGGAATAAAGATAGAG
261 GTTAGAACACGTTCACCTTGATCTTACTTTGTTTATTTCATTTTGTTTTAGGAATAAAGATAGAG
*
18152917 AAATGATGAATAATGGAGCCCAGCCCATTCGACCTTAATGAATACATTTTAAAACATATTTAAAA
326 AAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAAAACATATTTAAAA
18152982 ATAAAAAATTAATTAAAATTATAATTAAAAAATAGGTTGATGCTGGTGTTAAGTGTGTTGTAGTC
391 AT-AAAAATTAATTAAAATTATAATTAAAAAATAGGTTGATGCTGGTGTTAAGTGTGTTGTAGTC
* *
18153047 AAATAACCTTTTCAGATCTTTAGGTGTTGTCCAGTTTGACTAAAATAAAGATAGAGAAATGATGA
455 AAATAACCTTTTCAGATCTTTAGGTGTTGTCCAGCTTAACTAAAATAAAGATAGAGAAATGATGA
* * *
18153112 ATAATGGAGCCTAGCCCATTCGACCTTAATGAATACATTTTAAAATATATTTTAAAATAAAAAAT
520 ATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAAAATATATTTAAAAATAAAAAAT
* * *
18153177 TAATTAAAATTATAATT-TAAAAGTAGGTTGATACTGGTGTTAAGTGTGTTGTAGTCATATAACC
585 TAATT-AAACTATAATTAAAAAAATAGGTTGATACTGGTGTTAAGTGTGTTGTAGTCATATAACC
* * *
18153241 ATTTTAGATCTTTAGGTGTTATCCAGCTTGACTAAAATCGACGCTACTTGGGAGCTAACCCAAGT
649 ATTTTAGATCTTTAGATGTTATCCAGCCTGACTAAAATCGACGCTACTTAGGAGCTAACCCAAGT
*
18153306 TTCATTATCATTGTTGATGCTTTTGTTATTTGTTTTCTTTATTTTGTTAGAAAAGGTTTACCTTG
714 TTCATTATCATTGTTGATGCTTTTGTTATTTGTTTTCTTTAATTTGTTAGAAAAGGTTTACCTTG
* * *
18153371 ATCTTACTTTATTTGTTTGATTTTGTTTTAGAAAT
779 ATCTTACTTTATTTATTTCATTTTGTTTTAGAAAC
* *
18153406 AAAGATAGAGAAATGATGAATAATGGAGTCCAGCCCATTCAACCTCAATGAA
1 AAAGATAGAGAAATGATGAATAATGGAGCCCAGTCCATTCAACCTCAATGAA
18153458 ACAAAGATAG
Statistics
Matches: 809, Mismatches: 54, Indels: 4
0.93 0.06 0.00
Matches are distributed among these distances:
812 211 0.26
813 588 0.73
814 10 0.01
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.38
Consensus pattern (813 bp):
AAAGATAGAGAAATGATGAATAATGGAGCCCAGTCCATTCAACCTCAATGAATACATTTTAAAAT
ATATTTAAAAATAAAAAATTAATTAAAACTATAATTAAAAAAATAAGTTGATAGTGGTGTTAAAT
GTGTTATAGTCATGTAACATTTTTAGATCTTTAGGTATTATCCCAGCCTGACTAAAATCGACGCT
GCTTAGGAGGTAACCCAAGTTTCATTATCATTGTTGATGCTTTTGTTATCTGTTTTCTTTATTTT
GTTAGAACACGTTCACCTTGATCTTACTTTGTTTATTTCATTTTGTTTTAGGAATAAAGATAGAG
AAATGATGAATAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAAAACATATTTAAAA
ATAAAAATTAATTAAAATTATAATTAAAAAATAGGTTGATGCTGGTGTTAAGTGTGTTGTAGTCA
AATAACCTTTTCAGATCTTTAGGTGTTGTCCAGCTTAACTAAAATAAAGATAGAGAAATGATGAA
TAATGGAGCCCAGCCCATTCGACCTCAATGAATACATTTTAAAATATATTTAAAAATAAAAAATT
AATTAAACTATAATTAAAAAAATAGGTTGATACTGGTGTTAAGTGTGTTGTAGTCATATAACCAT
TTTAGATCTTTAGATGTTATCCAGCCTGACTAAAATCGACGCTACTTAGGAGCTAACCCAAGTTT
CATTATCATTGTTGATGCTTTTGTTATTTGTTTTCTTTAATTTGTTAGAAAAGGTTTACCTTGAT
CTTACTTTATTTATTTCATTTTGTTTTAGAAAC
Found at i:18155063 original size:6 final size:6
Alignment explanation
Indices: 18155052--18155080 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
18155042 AGTTCAGCCC
18155052 ATCAAA ATCAAA ATCAAA ATCAAA ATCAA
1 ATCAAA ATCAAA ATCAAA ATCAAA ATCAA
18155081 GTTCAATGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.66, C:0.17, G:0.00, T:0.17
Consensus pattern (6 bp):
ATCAAA
Found at i:18157210 original size:23 final size:23
Alignment explanation
Indices: 18157184--18157230 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
18157174 TATTATAAAT
18157184 ACATATTTTTAAAAAAATCTTGA
1 ACATATTTTTAAAAAAATCTTGA
18157207 ACATATTTTTAAAAAAATCTTGA
1 ACATATTTTTAAAAAAATCTTGA
18157230 A
1 A
18157231 TCCACCACTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.49, C:0.09, G:0.04, T:0.38
Consensus pattern (23 bp):
ACATATTTTTAAAAAAATCTTGA
Found at i:18164811 original size:7 final size:7
Alignment explanation
Indices: 18164799--18164823 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
18164789 AAGTTCGAGG
18164799 TTTGAGA
1 TTTGAGA
18164806 TTTGAGA
1 TTTGAGA
18164813 TTTGAGA
1 TTTGAGA
18164820 TTTG
1 TTTG
18164824 TGGGAAGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.28, T:0.48
Consensus pattern (7 bp):
TTTGAGA
Found at i:18166404 original size:119 final size:117
Alignment explanation
Indices: 18166022--18166503 Score: 673
Period size: 117 Copynumber: 4.1 Consensus size: 117
18166012 TTTTATGCAG
18166022 GAAAAATTGATACTTTCAACTTTTTCCC-AAAATATTTTTTGGAAACTTTAATTTCGAGGAAAAT
1 GAAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTGGAAACTTTAATTTCGAGGAAAAT
* * ** * *
18166086 TGATACTTTAAACTTTTTCTC-AAAAATTCATTTTTGAAAACTTATTTTTAA
66 TGATACTTTCAACTTTTCCTCAAAAAAAACTTTTTTGAAAATTTATTTTTAA
* * *
18166137 GAAAAATTGATACTTTCAACTTTTCCCCCAAAAATATTTTTTTGTGGAAAGC-TTATTTTCAAGG
1 GAAAAATTGATACTTTCAACTTTT-TCCCAAAAATA--TTTTT-TGGAAA-CTTTAATTTCGAGG
18166201 AAAATTGATACTTTCAACTTTTCCTCAAAAAAAAACCTTTTTTGAAAATTTATTTTTAA
61 AAAATTGATACTTTCAACTTTTCCTC-AAAAAAAA-CTTTTTTGAAAATTTATTTTTAA
18166260 GAAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTGGAAACTTTAATTTCGAGGAAAAT
1 GAAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTGGAAACTTTAATTTCGAGGAAAAT
*
18166325 TGATACTTTCAATTTTTCCTCAAAAAAAACTTTTTTGAAAATTTATTTTTAA
66 TGATACTTTCAACTTTTCCTCAAAAAAAACTTTTTTGAAAATTTATTTTTAA
* ** *
18166377 GGAAAATTGATACTTTCAACTTTTTTTCAAAAATATTTTTTGAAAACTTTTAATTTCGAGGAAAA
1 GAAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTGGAAAC-TTTAATTTCGAGGAAAA
* *****
18166442 TTAATACTTTCAACTTTTCCTCAAAACCTTTTTTTTTTGAAAATTTATTTTTAA
65 TTGATACTTTCAACTTTTCCTCAAAA-AAAACTTTTTTGAAAATTTATTTTTAA
18166496 GGAAAAAT
1 -GAAAAAT
18166504 ATTTTTTTAA
Statistics
Matches: 329, Mismatches: 25, Indels: 21
0.88 0.07 0.06
Matches are distributed among these distances:
115 24 0.07
116 3 0.01
117 72 0.22
118 50 0.15
119 68 0.21
120 51 0.16
121 1 0.00
122 15 0.05
123 45 0.14
ACGTcount: A:0.37, C:0.12, G:0.08, T:0.43
Consensus pattern (117 bp):
GAAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTGGAAACTTTAATTTCGAGGAAAAT
TGATACTTTCAACTTTTCCTCAAAAAAAACTTTTTTGAAAATTTATTTTTAA
Found at i:18166517 original size:59 final size:57
Alignment explanation
Indices: 18166024--18166501 Score: 424
Period size: 59 Copynumber: 8.1 Consensus size: 57
18166014 TTATGCAGGA
* * * **
18166024 AAAATTGATACTTTCAACTTTTTCC-C-AAAATATTTTTTGGAAACTTTAATTTCGAGG
1 AAAATTAATACTTTCAAC-TTTTCCTCAAAAATATTTTTT-GAAAATTTATTTTTAAGG
* * * * *
18166081 AAAATTGATACTTTAAACTTTTTCTCAAAAAT-TCATTTTTGAAAACTTATTTTTAAGA
1 AAAATTAATACTTTCAACTTTTCCTCAAAAATAT--TTTTTGAAAATTTATTTTTAAGG
* * ** *
18166139 AAAATTGATACTTTCAACTTTTCCCCCAAAAATATTTTTTTGTGGAAAGCTTATTTTCAAGG
1 AAAATTAATACTTTCAACTTTT-CCTCAAAAATA--TTTTT-T-GAAAATTTATTTTTAAGG
* * *
18166201 AAAATTGATACTTTCAACTTTTCCTCAAAAAAAAACCTTTTTTGAAAATTTATTTTTAAGA
1 AAAATTAATACTTTCAACTTTTCCTC--AAAAATA--TTTTTTGAAAATTTATTTTTAAGG
* * * **
18166262 AAAATTGATACTTTCAACTTTTTCC-CAAAAATATTTTTTGGAAACTTTAATTTCGAGG
1 AAAATTAATACTTTCAAC-TTTTCCTCAAAAATATTTTTT-GAAAATTTATTTTTAAGG
* * *
18166320 AAAATTGATACTTTCAATTTTTCCTCAAAAAAAACTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTAATACTTTCAACTTTTCCTC-AAAAATA-TTTTTTGAAAATTTATTTTTAAGG
* ** * **
18166379 AAAATTGATACTTTCAACTTTTTTTCAAAAATATTTTTTGAAAACTTTTAATTTCGAGG
1 AAAATTAATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAA--TTTATTTTTAAGG
* *
18166438 AAAATTAATACTTTCAACTTTTCCTCAAAACCTTTTTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTAATACTTTCAACTTTTCCTCAAAA---ATATTTTTTGAAAATTTATTTTTAAGG
18166498 AAAA
1 AAAA
18166502 ATATTTTTTT
Statistics
Matches: 350, Mismatches: 49, Indels: 41
0.80 0.11 0.09
Matches are distributed among these distances:
56 5 0.01
57 42 0.12
58 75 0.21
59 99 0.28
60 24 0.07
61 37 0.11
62 57 0.16
63 11 0.03
ACGTcount: A:0.37, C:0.13, G:0.08, T:0.43
Consensus pattern (57 bp):
AAAATTAATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAATTTATTTTTAAGG
Found at i:18166536 original size:5 final size:5
Alignment explanation
Indices: 18166526--18166591 Score: 50
Period size: 5 Copynumber: 12.8 Consensus size: 5
18166516 TTATTTAAAG
18166526 AAAAT AAAAT -AAAT AAAAAT AAAA- AACGAA- AATAA- AAAAT AAAAT
1 AAAAT AAAAT AAAAT -AAAAT AAAAT AA--AAT AA-AAT AAAAT AAAAT
18166571 AAAAT AAAAAT AAAAAT AAAA
1 AAAAT -AAAAT -AAAAT AAAA
18166592 ATATTAAACA
Statistics
Matches: 54, Mismatches: 1, Indels: 12
0.81 0.01 0.18
Matches are distributed among these distances:
4 8 0.15
5 27 0.50
6 19 0.35
ACGTcount: A:0.82, C:0.02, G:0.02, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:18166547 original size:6 final size:6
Alignment explanation
Indices: 18166536--18166594 Score: 70
Period size: 6 Copynumber: 9.8 Consensus size: 6
18166526 AAAATAAAAT
18166536 AAATAA AAATAA AAA-ACGA AAATAA AAA-ATA AAAT-A AAATAA AAATAA
1 AAATAA AAATAA AAATA--A AAATAA AAATA-A AAATAA AAATAA AAATAA
18166584 AAATAA AAATA
1 AAATAA AAATA
18166595 TTAAACAATC
Statistics
Matches: 47, Mismatches: 0, Indels: 12
0.80 0.00 0.20
Matches are distributed among these distances:
5 7 0.15
6 35 0.74
7 4 0.09
8 1 0.02
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:18166557 original size:23 final size:21
Alignment explanation
Indices: 18166526--18166592 Score: 61
Period size: 20 Copynumber: 3.2 Consensus size: 21
18166516 TTATTTAAAG
*
18166526 AAAATAAAATAAATAAAAATA
1 AAAAAAAAATAAATAAAAATA
18166547 AAAAACGAAAAT--A-AAAAATA
1 AAAAA--AAAATAAATAAAAATA
18166567 AAATAAAATAA-AAATAAAAATA
1 AAA-AAAA-AATAAATAAAAATA
18166589 AAAA
1 AAAA
18166593 TATTAAACAA
Statistics
Matches: 38, Mismatches: 1, Indels: 14
0.72 0.02 0.26
Matches are distributed among these distances:
19 2 0.05
20 12 0.32
21 9 0.24
22 10 0.26
23 5 0.13
ACGTcount: A:0.82, C:0.01, G:0.01, T:0.15
Consensus pattern (21 bp):
AAAAAAAAATAAATAAAAATA
Found at i:18166567 original size:30 final size:29
Alignment explanation
Indices: 18166531--18166592 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 29
18166521 TAAAGAAAAT
18166531 AAAAT-AAATAAAAATAAAAA-ACGAAAATAA
1 AAAATAAAAT-AAAATAAAAATA--AAAATAA
18166561 AAAATAAAATAAAATAAAAATAAAAATAA
1 AAAATAAAATAAAATAAAAATAAAAATAA
18166590 AAA
1 AAA
18166593 TATTAAACAA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
29 10 0.33
30 15 0.50
31 5 0.17
ACGTcount: A:0.82, C:0.02, G:0.02, T:0.15
Consensus pattern (29 bp):
AAAATAAAATAAAATAAAAATAAAAATAA
Found at i:18166593 original size:35 final size:34
Alignment explanation
Indices: 18166526--18166594 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 34
18166516 TTATTTAAAG
18166526 AAAATAAAATAAATAAAAATAAAAAACGAAAATAA
1 AAAATAAAATAAATAAAAATAAAAAAC-AAAATAA
18166561 AAAATAAAATAAAATAAAAATAAAAATA-AAAATA
1 AAAATAAAAT-AAATAAAAATAAAAA-ACAAAATA
18166595 TTAAACAATC
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
35 16 0.50
36 15 0.47
37 1 0.03
ACGTcount: A:0.81, C:0.01, G:0.01, T:0.16
Consensus pattern (34 bp):
AAAATAAAATAAATAAAAATAAAAAACAAAATAA
Found at i:18167026 original size:3 final size:3
Alignment explanation
Indices: 18167018--18167137 Score: 57
Period size: 3 Copynumber: 36.7 Consensus size: 3
18167008 TTAATAGATA
* *
18167018 AAT AAT AAT AAT AAT AAT AAT AGAT AAAT AAT AAT ATGT ATAT CAAC
1 AAT AAT AAT AAT AAT AAT AAT A-AT -AAT AAT AAT A-AT A-AT -AAT
* *
18167065 AGAT AAAT AAT AAA AAT GAA- AAT AA- AA- AAT ATAT ATAT ATT AAT
1 A-AT -AAT AAT AAT AAT -AAT AAT AAT AAT AAT A-AT A-AT AAT AAT
*
18167109 AGAT AGT AAT AAT AAAT AAT AAAT AAT AA
1 A-AT AAT AAT AAT -AAT AAT -AAT AAT AA
18167138 GTAACTAAGA
Statistics
Matches: 94, Mismatches: 10, Indels: 26
0.72 0.08 0.20
Matches are distributed among these distances:
2 6 0.06
3 55 0.59
4 30 0.32
5 3 0.03
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:18167033 original size:20 final size:20
Alignment explanation
Indices: 18166986--18167053 Score: 70
Period size: 20 Copynumber: 3.4 Consensus size: 20
18166976 AACCAAAAAA
18166986 AATAATTAGATAAATAA-AACT
1 AATAA-TAGATAAATAATAA-T
*
18167007 ATTAATAGATAAATAATAAT
1 AATAATAGATAAATAATAAT
18167027 AATAATA-AT-AATAGATAAAT
1 AATAATAGATAAATA-AT-AAT
18167047 AATAATA
1 AATAATA
18167054 TGTATATCAA
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
18 4 0.10
19 4 0.10
20 28 0.67
21 6 0.14
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.31
Consensus pattern (20 bp):
AATAATAGATAAATAATAAT
Found at i:18167038 original size:26 final size:26
Alignment explanation
Indices: 18167009--18167137 Score: 104
Period size: 26 Copynumber: 4.9 Consensus size: 26
18166999 ATAAAACTAT
18167009 TAATAGATAAATAATAATAATAATAA
1 TAATAGATAAATAATAATAATAATAA
*
18167035 TAATAGATAAATAATAAT-AT-GTATA
1 TAATAGATAAATAATAATAATAATA-A
* *
18167060 TCAACAGATAAATAATAAAAATGAA-AA
1 T-AATAGATAAATAATAATAAT-AATAA
* * * * *
18167087 TAAAAAATATATATATATTAATAGATAG
1 TAATAGATAAATA-ATAATAATA-ATAA
18167115 TAATA-ATAAATAATAAATAATAA
1 TAATAGATAAATAAT-AATAATAA
18167138 GTAACTAAGA
Statistics
Matches: 81, Mismatches: 13, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
24 2 0.02
25 4 0.05
26 46 0.57
27 23 0.28
28 6 0.07
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (26 bp):
TAATAGATAAATAATAATAATAATAA
Found at i:18174003 original size:25 final size:25
Alignment explanation
Indices: 18173975--18174022 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
18173965 CATATTATAA
* *
18173975 TTAACCAAAATTATTATAATATCCT
1 TTAACCAAAATTATGAAAATATCCT
* *
18174000 TTAAGCATAATTATGAAAATATC
1 TTAACCAAAATTATGAAAATATC
18174023 ATTTTTGATT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.46, C:0.12, G:0.04, T:0.38
Consensus pattern (25 bp):
TTAACCAAAATTATGAAAATATCCT
Found at i:18174220 original size:26 final size:26
Alignment explanation
Indices: 18174176--18174226 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
18174166 GTAACTGAAA
*
18174176 TTATTATAATGCCTCTCTTAACATAT
1 TTATTATAATCCCTCTCTTAACATAT
*
18174202 TTATTATAATACCCT-TCTTACCATA
1 TTATTATAAT-CCCTCTCTTAACATA
18174227 ATTGGCCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.31, C:0.22, G:0.02, T:0.45
Consensus pattern (26 bp):
TTATTATAATCCCTCTCTTAACATAT
Done.