Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168493.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_90, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100673
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Warning! 1000 characters in sequence are not A, C, G, or T
Found at i:1551 original size:21 final size:20
Alignment explanation
Indices: 1519--1557 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
1509 CGGGCACTAT
*
1519 GCCGGCCAAAAGGAGGATAC
1 GCCGACCAAAAGGAGGATAC
*
1539 GCCGACCAGAAAGGCGGAT
1 GCCGACCA-AAAGGAGGAT
1558 GCGCAAGCCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.33, C:0.26, G:0.36, T:0.05
Consensus pattern (20 bp):
GCCGACCAAAAGGAGGATAC
Found at i:2212 original size:26 final size:26
Alignment explanation
Indices: 2176--2228 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2166 TCTGTTTGTT
2176 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
2202 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
2228 C
1 C
2229 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:4190 original size:22 final size:22
Alignment explanation
Indices: 4149--4190 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
4139 CCCTGACCAA
*
4149 AAAGGCGGGATACGCCAGCCAG
1 AAAGGCGGGATACGCAAGCCAG
* *
4171 AAAGGCGGGATGCGTAAGCC
1 AAAGGCGGGATACGCAAGCC
4191 GTGGATCGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.31, C:0.24, G:0.38, T:0.07
Consensus pattern (22 bp):
AAAGGCGGGATACGCAAGCCAG
Found at i:7944 original size:865 final size:864
Alignment explanation
Indices: 3211--9172 Score: 7181
Period size: 865 Copynumber: 6.8 Consensus size: 864
3201 CTTAGATTGA
* ** * * *
3211 GAATTAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTAGGCGGGCAGGCACTACACCGGCTA
1 GAATGAACTCCGTATGCCTAAGCCAA-CGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCA
*
3276 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
65 GAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* ** *
3341 TTCTACTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATC
130 TTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
* * *
3406 TGAAGTTTCATGGCAAGATGACTCGCTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCG
195 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCG
* *
3471 AGATTTTTTTAAAATTTTTTCAGAATGAGTTTTGGCCCCAAACTTGGTAGACGTGATGCTTGTAT
260 AGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * *
3536 TTTT-TTGGCATGCACAAAAAAATTAAGCTAAAAAACTTGAAGTGTACAGGATTTTGGGACCATT
324 TTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACAGGATTTTGTGACCATT
3600 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
388 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
*
3665 TGCAT-TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
453 TGC-TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * * ** * *
3729 CGCACCAGCACCAATCACACATCATGCACTCACACTCGCCCGCCCCCCAATCTCTGGAACCCCAA
517 AGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGCCCCCCAATCTC-GGAACCCCAA
* * * *
3794 TGCCATCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGGGTGAAAAAAAAATGTGGC
580 TGCCGTCGGTCAGGTTCTCCGATGATGCTCC-G-GATGGTGCCCCAGGCG-AAAAAAAATGCGGC
* * * * *
3859 ACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTCGATCCGGTCCGATCTTACACTAG
642 ACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCCAGTCCGATCTTACACTGG
* * *
3924 GAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
707 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGG
** * * * * * * *
3989 GGCAGGATGCATAAGCCGGGGATTGGTCGGGTCCCCTCCTACGTTCTGCTGATCTTGCTGCTGCA
772 GGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCC-CCTGCGTGCTGCCGATCCTGCTGCCGCA
** * *
4054 ACCCTCCA-TCTGGTCTGATCTTAGATTGG
836 ACCCT-CAGTCTGGTCCAATCTTAGACTAG
* * *
4083 GAATGAACTCCGTATGCCTATGCCAAACGACGAAACGAGCGGTCGGACGGGCACTACCCTGACCA
1 GAATGAACTCCGTATGCCTAAGCC-AACGACGAAACGAGCGGGCGGGCGGGCACTA--C-G--C-
*
4148 AAAAGGCGGGATACGCCAGCCAGAAAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGT
59 ------C--G----GCCAG--AG--AGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* **
4213 GGGTCTAGGCACATCTTCATATTTCTATCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
108 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
4278 AATGGTCCCGTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGA-
173 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * * *
4342 TTTTAAAAATTTTTACGGTTCGGGATTTTTTTAAAATTTTTTGAAAACGAGTTTTGGCCCCAAAC
238 TTTTGAAACTTTTTACGGTTCGAGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
* * *
4407 TTTGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAAT
302 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
4472 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCA
367 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
4537 GCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
432 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * ** *
4602 GGGGGCCAATATAAGGGCCATGTACCAGCACCAATCACACATCATGCACTCACACCCCCC-CGCC
497 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGC-CC
* * * *
4666 CCCAATCTCCGGAACCCCAATGCCATCGGTCAGGTTCTCCGACGATACTCCGGCGATAGTG--CC
561 CCCAATCT-CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCC-G-GATGGTGCCCC
* * * *
4729 GGGCAAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCTTGTGCACCCACAACCCTCGGT-
623 AGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTC
* * * * *
4793 CTGATCCGATCTTACACTAGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCA
688 CAG-TCCGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * *
4858 GGCGCTCAGCCAGCCAGAGGGGCAAGATGCGCAAGCCAGGGATC-AGTTGGGT-CCCCCTGCGTG
752 GGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCCTGCGTG
* * * * * ** *
4921 CTGTCGATCTTGCTGCTGTACCCCTTGGTCCGGTCCAATCTTAGACTAG
816 CTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTAG
* ** * * * * * * *
4970 GAATGAACTCCGTATGCCTAAGCCAATAGAAAAAATGAGTGGGCGGGCAGGAACCACGTCGGCTA
1 GAATGAACTCCGTATGCCTAAGCCAA-CGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCA
** *
5035 GAGAGGCGGGATGCGCAAGTTGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
65 GAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * *
5100 TTCTACCATGCCATTGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
130 TTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
* *
5165 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACCTTTTACGATTCG
195 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCG
* * *
5230 AGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTTGCAGACGTGATCCTTGTAT
260 AGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * *
5295 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCTAAATGTATAGGATTTTGTGACCATTT
324 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTT
*
5360 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTTGCAGCAAACCTGTAAAATCTCAAAT
389 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
*
5425 GCTCTTTAAGGGGGTGTGCA-TTCTCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAA
454 GCTCTTTAAGGGGGTGTG-AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
*
5489 GTACCAGCACCTATCGCACATCATGTGCGCACATCCCCCCG-CCCCCAATCGTCGGAACCCCAAT
518 GTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGCCCCCCAATC-TCGGAACCCCAAT
* * * *
5553 GCCGCCGGTTAGGTTCTCCGATAATGCTTCGACGATGGTGCCCCAGGCGAAAAAAAAATGCGGC-
581 GCCGTCGGTCAGGTTCTCCGATGATGCTCCG--GATGGTGCCCCAGGCG-AAAAAAAATGCGGCA
* * * ** ** * * ** * *
5617 CCA-CA-A-CCCTCG-G-TC--CA-GTCCAATC-TTACACTGGGAATGAACTCCGTATGCTTAGA
643 CCAGCACATGCC-CGAGCCCAGCATGTGCACCCACAACCCTCGG--TCCAGTCCG-AT-CTTACA
** * * * *
5673 CTAAGAATGAACTCCGTACGCCCAAGTCAACCCACGAAACGAGCGTGCGGGTGCTTAGCAGGCCA
703 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCA
* * * * * * * * * *
5738 GAGGGGCAGGATGAGCAAACCAGGGTTCGGTCGAGTCCCCTCTGCGTGCTGCGGACCCTGCT-AC
768 GAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCC
* * * *
5802 GTGAACCTTCGGTCTAGTCCAATCTTAGACTAG
833 G-CAACCCTCAGTCTGGTCCAATCTTAGACTAG
5835 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGGCACTACGCCGGCCA
1 GAATGAACTCCGTATGCCTAAGCCAA-CGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCA
5899 GAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
65 GAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
5964 TTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
130 TTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
*
6029 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG
195 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCG
6094 -GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
260 AGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
*
6158 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG
325 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG
6223 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
390 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
6288 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGT
455 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
6352 A-CAGCACCCATCGCACATCATGTGCGCACACCCCCCG-CCCCCAA--T--G----CC---G-C-
520 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCTCGGAACCCCAATGCCG
* *
6402 -CGGTCAGGTTCT-C--TG--G---C-GATGGTACCGCCAGGCGAAAAAAAAATACGGCACCAGC
585 TCGGTCAGGTTCTCCGATGATGCTCCGGATGGTGCC-CCAGGCG-AAAAAAAATGCGGCACCAGC
* * *
6457 ACATGCCCGAGCCCAGCATATGCGCCCACAACCCTCGGTCCGGTTTGATCTTACATAGGGAATGA
648 ACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCC----AG-TC---C---------G-
* * *
6522 AATCTGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGGAACGAGCGTGCG
695 -ATCT-TA--C----ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * *
6587 GGAGCTCAGCCGGCCAGAGGGGCAGGATGTGCAAGTCGGGGATCGATCGGGTCCCCCCCTGTGTG
752 GGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGT-CCCCCCTGCGTG
* * * *
6652 CTGCAGATCCTGCTGTCGCGACCCTCGGTCTGGTCCAATCTTAGACTAG
816 CTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTAG
* * * *
6701 GAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGAGTACTACGCCGGCCA
1 GAATGAACTCCGTATGCCTAAGCCAA-CGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCA
* *
6766 GAGAGGCGGGATGCGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
65 GAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
6831 TTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
130 TTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
6896 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCG
195 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCG
6961 AGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
260 AGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
*
7026 TTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACTGGATTTTGTGACCATTT
324 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTT
7090 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
389 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
7155 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
454 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
7220 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGTCGGAACCCCAATGC
519 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATC-TCGGAACCCCAATGC
* * *
7285 CGTCGATCAGGTTCTCCGATGATGCTCCGATGATGGTGCTCCAGGCG-AAAAAAATACGGCACCA
583 CGTCGGTCAGGTTCTCCGATGATGCTCCG--GATGGTGCCCCAGGCGAAAAAAAATGCGGCACCA
* * * * * * * *
7349 GCAAATGCCTGAGGCCAACATGTGGACCCGCAACCCTCGGTCCAGTCTGATCTTACACTGGGGAT
646 GCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCCAGTCCGATCTTACACTGGGAAT
*
7414 GAACTCCG-ATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGTGCTCAGCCGGTCCAGA-GGGC
711 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGG-CCAGAGGGGC
* * * * * * * * *
7477 AGGATGCCCATGCCGGGGATCGACCGAGT-CCTCTTGCGTGCTGCCAATCCTGCTACCACAACCC
775 AGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAACCC
*** *
7541 TCAGTCTGGTTTGATCTTAGAGTAG
840 TCAGTCTGGTCCAATCTTAGACTAG
** ** ** * * *
7566 GAATGAACTCTATATGTGTAAGCCAACTGATAAAACGAGCGGGCGGGTGGGCACTGCGTCGGCCA
1 GAATGAACTCCGTATGCCTAAGCCAAC-GACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCA
* *
7631 GAGAGGC-GGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTTCATA
65 GAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC-TTCATA
* *
7695 TTTCTGCCACGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA-TCTTCAT
129 TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
* *
7759 GTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
194 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC
*
7824 G-GA-TTTTTAAATTTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
259 GAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-
*
7887 TTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTATACAGGATTTTGTGACCA
323 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG--TACAGGATTTTGTGACCA
*
7952 TTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
386 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
8017 AATGCTCTTTAAGGGGGTGTGAGTTCT-GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
451 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
8081 AAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCAC-CCCCCCAA--TCGGAACCCCAA
516 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGCCCCCCAATCTCGGAACCCCAA
* *
8142 TGCCG-CTGGTCAGGTTCTCC---GA-----C-GATGGTGCCCCGGGCGAAAAAAAATGTGTGGC
580 TGCCGTC-GGTCAGGTTCTCCGATGATGCTCCGGATGGTGCCCCAGGCGAAAAAAAA--TGCGGC
* * * *
8197 ACCAGCACATGCCCGAGCCCAGCATGTGCACCTACAA--CTC-GTCCGGTCTGACCTTACACTGG
642 ACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCCAGTCCGATCTTACACTGG
* * * ***** * * * *
8259 GAATGAACTCTGTATG-CTTAGACTGGGAATGAACTCGTATGCTTAGACTGGAATGAACTCCATA
707 GAATGAACTCCGTATGCCTAAGTCAACCCACGAA-ACG-A-GCGT-G-C-GG-GTG--CT-C--A
* *
8323 TGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCAGGATGACCAA
760 -GCC---G----GCCA-G--A-G-G-G-GCA-G-G---A---TG-C------GCA--A-G-CC--
* * * * *
8388 GCGGGATTTCGATCGGGTCCCCCCCTAG-GTGCT-CGGATCCTACTGCCACAACCCTCA-TCAGT
789 G-GGGA--TCGATCGGGT-CCCCCCT-GCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGG
** *
8450 TACTGATCTTAGACTGG
849 T-CCAATCTTAGACTAG
* *
8467 GAATGAACTCCGTGATGCCTAAG-C-ACGACGAAACGAGCGGGCGGTCGGGCACTACGCCAGCCA
1 GAATGAACTCCGT-ATGCCTAAGCCAACGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCA
*
8530 GAGAGGCAGGATGCGCAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
65 GAGAGGCGGGATGCGC-AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
8595 TTTTCTGCCATGCC-ATGCCA-TTTTATGGCTTGTTAAA-TCATACAATGGTCCCTTAAGCCTTC
129 -TTTCTGCCATGCCAATGCCATTTTTATGGCTTG-TAAATTCATACAATGGTCCCTTAAGCCTTC
8657 ATGTGAAGTTTCATGGCAAGACGACTCG-TTTCTATTTTTCACGATTTTTG-AACTTTTTACGGT
192 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
8720 TCGAGATTTTTTGTAAAATTTTTTCAGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTT
257 TCGAGA-TTTTT-TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
8784 GTATTTTTGTTGGCATG--CATAAAAATTCAGCTAAAAACTCAAAGTGTACA-GATTTTGTGACC
320 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACC
8846 ATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
385 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
8910 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
450 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
** * *
8975 CAAGTACCAGCATGCAT--CACATCATGTGCACACACCACCCCCCGCCCCCAATCT--GAA-CCC
515 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGC-CCCCCAATCTCGGAACCCC
* * * *
9035 AATGCCG-CCGTCAGGTTCT-CGGTGATGCTTCGGCATGGTGCCCCA-GCAAAAAAAAAT---GC
578 AATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGG-ATGGTGCCCCAGGCGAAAAAAAATGCGGC
*
9094 ACCAGCACATG-CCGAGCCCAGCATGTGCACCCGCAACCCTC-GTCCAGT-CGATCTTACACTGG
642 ACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCCAGTCCGATCTTACACTGG
9156 GAATGAACTCCGTATGC
707 GAATGAACTCCGTATGC
9173 TTAGACTGGG
Statistics
Matches: 4468, Mismatches: 403, Indels: 412
0.85 0.08 0.08
Matches are distributed among these distances:
833 8 0.00
834 21 0.00
835 3 0.00
836 3 0.00
837 3 0.00
838 3 0.00
839 2 0.00
841 4 0.00
842 3 0.00
843 7 0.00
844 11 0.00
846 3 0.00
847 1 0.00
849 54 0.01
850 17 0.00
851 1 0.00
852 38 0.01
853 1 0.00
854 2 0.00
855 2 0.00
856 3 0.00
857 2 0.00
858 5 0.00
859 20 0.00
860 63 0.01
861 87 0.02
862 250 0.06
863 45 0.01
864 484 0.11
865 602 0.13
866 431 0.10
867 296 0.07
868 188 0.04
869 117 0.03
870 36 0.01
871 8 0.00
872 47 0.01
873 3 0.00
874 5 0.00
875 6 0.00
876 4 0.00
877 3 0.00
878 1 0.00
880 2 0.00
881 1 0.00
883 1 0.00
884 4 0.00
885 2 0.00
886 14 0.00
887 86 0.02
888 5 0.00
889 158 0.04
890 10 0.00
891 4 0.00
892 65 0.01
893 287 0.06
894 334 0.07
895 85 0.02
896 46 0.01
897 48 0.01
898 56 0.01
899 90 0.02
900 84 0.02
901 130 0.03
902 52 0.01
903 11 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (864 bp):
GAATGAACTCCGTATGCCTAAGCCAACGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAG
AGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
TCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA
GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGA
AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCTCGGAACCCCAATGCCGT
CGGTCAGGTTCTCCGATGATGCTCCGGATGGTGCCCCAGGCGAAAAAAAATGCGGCACCAGCACA
TGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCCAGTCCGATCTTACACTGGGAATGAACT
CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATG
CGCAAGCCGGGGATCGATCGGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTC
TGGTCCAATCTTAGACTAG
Found at i:8304 original size:25 final size:26
Alignment explanation
Indices: 8249--8318 Score: 117
Period size: 26 Copynumber: 2.8 Consensus size: 26
8239 CCGGTCTGAC
*
8249 CTTACACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
8275 CTTAGACTGGGAATGAACTC-GTATG
1 CTTAGACTGGGAATGAACTCTGTATG
8300 CTTAGACT-GGAATGAACTC
1 CTTAGACTGGGAATGAACTC
8319 CATATGCCTA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
24 11 0.26
25 13 0.30
26 19 0.44
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:8324 original size:25 final size:26
Alignment explanation
Indices: 8249--8325 Score: 113
Period size: 25 Copynumber: 3.0 Consensus size: 26
8239 CCGGTCTGAC
* *
8249 CTTACACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
8275 CTTAGACTGGGAATGAACT-CGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
8300 CTTAGACT-GGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
8325 C
1 C
8326 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
24 10 0.21
25 19 0.40
26 18 0.38
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:9182 original size:26 final size:26
Alignment explanation
Indices: 9146--9198 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
9136 TCCAGTCGAT
9146 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
9172 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
9198 C
1 C
9199 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:15742 original size:26 final size:26
Alignment explanation
Indices: 15713--15765 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15703 CTGGTCCGAT
15713 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
15739 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
15765 C
1 C
15766 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:17876 original size:157 final size:158
Alignment explanation
Indices: 17500--17876 Score: 517
Period size: 157 Copynumber: 2.4 Consensus size: 158
17490 CAGTCCAGTC
*
17500 CGATCTTACACTGGG-ATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACT
1 CGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCT
* * * * *
17564 CAGCCAGCCATAGGGGCAGGATGCCCAAGCCAGGGATCGATCGGGTCCCCCCTGTGTGCTGTCGA
66 CAGCCAGCCAGAGGGCCAGGATGCACAAGCCAGGGATCGATCGGGTCCCCCCTGCGTGCTATCGA
* ** *
17629 TCCTACTACCGTAACCCTCGGTCCGGTT
131 TCCTACTACCGCAACCCTCAATCCGATT
* * *
17657 CGATCTTACACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAACGTGCGGGCGCT
1 CGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCT
* * *
17722 CAG-CGGCCAGAGGGCCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCTGCGTGCTATCGA
66 CAGCCAGCCAGAGGGCCAGGATGCACAAGCCAGGGATCGATCGGGTCCCCCCTGCGTGCTATCGA
* *
17786 TCCTGCTACCGCAACCCTCAATCTGA-T
131 TCCTACTACCGCAACCCTCAATCCGATT
* * * * *
17813 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
1 C-GATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCG
17877 GGCTCTGCGC
Statistics
Matches: 192, Mismatches: 26, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
156 2 0.01
157 142 0.74
158 48 0.25
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
CGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCT
CAGCCAGCCAGAGGGCCAGGATGCACAAGCCAGGGATCGATCGGGTCCCCCCTGCGTGCTATCGA
TCCTACTACCGCAACCCTCAATCCGATT
Found at i:21264 original size:26 final size:26
Alignment explanation
Indices: 21235--21287 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21225 CCGATCCAAT
*
21235 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACACCGTATG
*
21261 CTTAGACTGGGAATGAACACCGTATG
1 CTTACACTGGGAATGAACACCGTATG
21287 C
1 C
21288 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTACACTGGGAATGAACACCGTATG
Found at i:25762 original size:26 final size:27
Alignment explanation
Indices: 25726--25783 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 27
25716 CTGGTCTGAT
* *
25726 CTTACACTGGGAATGAACTCCGTATG-
1 CTTAGACTGGGAATGAACTACGTATGC
25752 CTTAGACTGGGAATGAACTACGTATGC
1 CTTAGACTGGGAATGAACTACGTATGC
25779 CTTAG
1 CTTAG
25784 TCAACCCATG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTACGTATGC
Found at i:26659 original size:26 final size:26
Alignment explanation
Indices: 26623--26675 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26613 CTGGTCTGAT
26623 CTTACACTGGGAATGAACTCCGCATG
1 CTTACACTGGGAATGAACTCCGCATG
* *
26649 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGCATG
26675 C
1 C
26676 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGCATG
Found at i:28422 original size:26 final size:26
Alignment explanation
Indices: 28384--28434 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
28374 CTGGTCTGAC
*
28384 CTTATACTAGGAATGAACTCCGTATT
1 CTTAGACTAGGAATGAACTCCGTATT
*
28410 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
28435 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATT
Found at i:30200 original size:26 final size:26
Alignment explanation
Indices: 30164--30216 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30154 CCGGTCTGAT
30164 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
30190 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
30216 C
1 C
30217 GTAAGTCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:31309 original size:896 final size:895
Alignment explanation
Indices: 25029--31365 Score: 8561
Period size: 894 Copynumber: 7.1 Consensus size: 895
25019 CCGTCTGATT
* * *
25029 TTAGACTGGGAATGAACTCCGTATGGCTAAGCCAACCGACGAAACGAGTGGGCGAGCGGGCACTA
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTA
*
25094 CGTCGGCCAGAGAGGCGGGATGCGCAAGCCGT-GATCGATAGGGTGGTAGGTGGGTTTAGGCACA
66 CGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
*
25158 TCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
131 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
25223 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCCATGATTTTTGAAACTTT
196 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT-CACGATTTTTGAAACTTT
* * *
25288 TTATGGTTCGAGATTTTTTT-AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
260 TTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTG
* *
25352 ATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCAAAGTGTACAGGATTTT
325 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
25416 GTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
390 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
25480 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
455 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * * * *
25545 AAGGGCCAAGTACCAGCACCCATCACACATCATGTGGGCACACCCCCCGCCTCCCCAATCATCGA
520 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCGCCCCCCCAATCGTTGG
* * * *
25610 AACCCCAATGCCGCCGATCAGGTTCTCCGACGATGGTGCC-CCG--GGT------G---AAAAAA
584 AACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT-CCGACGATGGTGCCCCCGACAAAAAAA
** ** ** *
25663 AATGTGGCACCAGCACATGCTTGAGCCCAGCATGTGCATCTGA-AACCCTTGGTCTGGTCTGATC
648 AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCA-CCCACAACCCTCGGTCTGGTCTGATC
* *
25727 TTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTACGTATGCCTTAGTCAACCCA
712 TTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * *
25792 TGAAATGAGCGTGCGGGCGCTCAGCC-AGCCAGAGGGGCAGGATGCGTAAGCTGGGGATCGGCCG
777 CGAAACGAGCGTGCGGGCGCTCAGCCGA-CCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACTG
* * * * * * **
25856 GGTCCCCCCTGCGTGCTACCAATCCTGCTGCCGCAACCCTC-AGTTTGGTCCGATC
841 GGTCCCCCCTGCATGCTGCCGATCCTACTGCCACAACCCTCTA-TCTGGTCTAATC
* *
25911 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGCGGGCACTA
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTA
* * * * *
25976 CGCTGGCCAGAGAGGCGAGATGTGCAAGTCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACA
66 CGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
26041 TCTTCATATTTCTGCCATCCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
131 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
26106 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTTACGATTTTTGAAACTTTT
196 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * *
26171 TACGGTTCGAGATTCTTTTAAAATTTTTTCAGAAGGAGTTTTGTCCCCAAACTTGGTAGATGTGA
261 TACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGA
* *
26236 TCCTTGT-TTTTTTGTTGGCAAGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
326 TCCTTGTATTTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
* * * *
26300 GTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTAGCAGTAAACCTGTAA
390 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * * * * * * *
26365 AATCTAAAATGATGTTTAAAGGAGTGTAAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAGTAT
455 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* ** * * *
26430 AAAGGCCAAGTACCAGTGCCCGTCGCACATCA-GTTGCGCACAACCCCCCCGCCCCCCAATCGTC
520 AAGGGCCAAGTACCAGCACCCATCGCACATCATG-TGCGCAC-ACCCCCGC-CCCCCCAATCGTT
* * * * *
26494 GGAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCC-AGCGACGGTGCCCCGGGCAAAAA
582 GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCCGACAAAAA
** * * *
26558 AAAATGTGGCACCAGCACTTGCCCGAGCCCAGCATGTTCACCCACAACCCTTGGTCTGGTCTGAT
646 AAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCTGGTCTGAT
*
26623 CTTACACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
711 CTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * ** *
26688 ATGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCACGGATCGACCG
776 ACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACTG
* * * * * * *
26753 GGTCCCCCCCTACGTGCTGCTGATCCTATTGCCACAAACCTC-AGTCTGATCTGATC
841 GGT-CCCCCCTGCATGCTGCCGATCCTACTGCCACAACCCTCTA-TCTGGTCTAATC
* * * * *
26809 TTAGACTAGGAATGAACTCTGTATGCCTAAGCCATCCGACGAAACGAGCGGACGGGCAGGCACTA
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTA
* *
26874 CGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTCGTAGGTGGGTTTAGGCACA
66 CGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
26939 TCTTCATGTTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAA
131 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
27004 GCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTCCATGATTTTTGAAACTTTT
196 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * *
27069 TACAGTTCGGGATTTTTTTAAAACTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTTA
261 TACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGA
* ** *
27134 TCCTTGTATTTTTGTTGGTGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAGAGGATTTTG
326 TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
27199 TGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAAT-GCTACTGGCAGCAAACCTGTAAA
391 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
27262 ATCTCAAAATGCTCTTTAAGGGGGGGTGAGTT-TCAAGGTTTGATGAGGGATAGGGGGCCAATAT
456 ATCTC-AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
** * * **
27326 AAGGGCCAAGTACCAGCACCCATCAAACATCATGTGCACACACCTCCCTTCCCTGCCAATCGTTG
520 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCC-GCCCCCCCAATCGTTG
* * * * *
27391 GAACCCCAACGCCGCCGGTCAGG---T-------T-CTCCGACGATGGTGCCCCGGGCGAAAAAA
583 GAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCCGACAAAAAAA
* ** * * *
27445 AATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGATCTGATAC-AATC
648 AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCTGGT-CTGATC
* * ** *
27509 TTACACTGGGAATGAACTCAGTATGCTTAGACTAGGAATGAACT-C--ATAACTACAGTGAACCC
712 TTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA-AGTCAACCC
* * * **
27571 -C-AGAA-GAGCGT-CGGGCGCTCAGCCGGCCAGA-GGGCAGAATGGCGCAAGCTGGGGAT-GGT
776 ACGA-AACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGAT-GCGCAAGCCGGGGATCGAC
* * * * * * *
27630 TCGGGT-ACCCCT-TATGCTG-CGATTCC-ACT--CATAACTC-CAAACTTGGTCCGGTCCATC
839 T-GGGTCCCCCCTGCATGCTGCCGA-TCCTACTGCCACAACCCTCTATC-TGGT-C--T-AATC
*
27687 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A---AGCGGGCGGGCACTA
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTA
*
27748 TGCCGGCCAGAGAGGCGGGATGCGCAAGCCG-GGATCG-TAGGGTGGT-GGTGGGTTTAGTGCCA
66 CGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG-G-CA
*
27810 CAT-TTCAAATTTCCTGCCATGCCAAT-CCATTTTTATGGCTTGTAAATTCATAACAATGGTACC
129 CATCTTCATATTT-CTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT-ACAATGGT-CC
* * * *
27873 TTTAAGCCTTCATGCGAAGTTTCATGGC-AGACGTACTCGTTTTCTATTTTTCACAATTTTTAAA
191 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG-ACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * *
27937 ACTTTTCACGGTTTGGGATTTTTTTTTAAATTTTCTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
255 ACTTTTTACGGTTCGGGA-TTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
*
28002 GATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
319 GATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
* *
28067 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTATTGGCAGCAAAC
384 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
28132 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGC
449 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
28197 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCC-CCGGCCCCTAA
514 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGCC--CCCCCAA
* * *
28261 TCATCGGAACCCCAATGCCG-CGGGTCAGGTTCT-C--C-A-------ACGATGGTACCCCACG-
577 TCGTTGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC-CGA
* * * * ** * *
28313 CGAAAAAAAATGCGGCACCAGTAGATGGTCGAGCCCAGCATGTGCACCCGCAACCCTTGGTCTGG
640 CAAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCTGG
* * * *
28378 TCTGACCTTATACTAGGAATGAACTCCGTATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
705 TCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * *
28443 CAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACTAGAGGGGCAGGATGCGCAAGCTGGGGAT
770 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGAT
* * * * * *
28508 TGACTGGGTCCCCCCTGCATGCTGCTGATCTTACTGCCGCAACCCTC-AGTCCGATAC-AATC
835 CGACTGGGTCCCCCCTGCATGCTGCCGATCCTACTGCCACAACCCTCTA-TCTGGT-CTAATC
* * *
28569 TTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAGCGGGCAGGCGGGCACTA
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTA
* * * * *
28634 CACCGGCCAGAGAAGCGGGATGCACAATCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACA
66 CGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
28699 TCTCCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAC
131 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * *
28764 GCCTTCATGTGAAGTTTCATGGCAAAACGATTCATTTTCTATTTTTCATGATTTTTGAAACTTTT
196 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * * *
28829 TACGGTTCAGGA-TTTTTTAAAATTTTTTTAGAAGGAATTTTGCCCCCAAACTTGGTCGATGTGA
261 TACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGA
* *
28893 TCCTTGT-TTTTTTGTTGGCATGCACAAAAAAACTCAGCTAAAAACCCGAAGTGTACAGGATTTT
326 TCCTTGTATTTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
*
28957 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAA
390 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
29022 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATCAGGGATAGGGGGCCAATAT
455 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
29087 AA-GGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACA-------ACCCCCAATCGCTGGA
520 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGCCCCCCCAATCGTTGGA
* ** **
29144 ACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGCTCCGGGGATGGTG-CCCCGAGTGAAAAAAA
585 ACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCCGA-CAAAAAAAA
** ** * * * * ** *
29208 ATGTGGTTCCAGCACATGCCCGAGCCCAGCAAGTGCATCCGCAGCCCTCGGTCCAGTCCGATCTT
649 ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCTGGTCTGATCTT
* *
29273 ACACTGGGAATGAACTCCGTATGCTTGGACTAGGAATGAGA-TCCGTATGCCTAAGTCAACCCAC
714 ACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA-ACTCCGTATGCCTAAGTCAACCCAC
* * * * * * *
29337 GAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAAGGGCAGGATGCGTAAGCCGAGGATTGA-TCGG
778 GAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACT-GG
* * * *
29401 GTCCCCCCTTACGTGCTACCGATCCTACTGCCACAACCCT-TGGTCTGGT-TCAATC
842 GTCCCCCC-TGCATGCTGCCGATCCTACTGCCACAACCCTCT-ATCTGGTCT-AATC
* * * **
29456 TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCAGGCGGTTGGGCACTA
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTA
*
29521 CGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
66 CGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
*
29586 TCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
131 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
29651 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTT
196 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * *
29715 TACGGTTTGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
261 TACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGA
* *
29780 TCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
326 TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
*
29845 TGACCATTTGAAAAAATTGTCCCCA-TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
391 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
29909 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
456 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
*
29974 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTG-CCCCCCAATCGTTGAA
521 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-GCCCCCCCAATCGTTGGA
* ** *
30038 ACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCTGGGCAAAAAAAAA
585 ACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCCGACAAAAAAAAA
* * *
30103 TACGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCATAACCCTCGGTCCGGTCTGATCTTA
650 TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCTGGTCTGATCTTA
* * * *
30168 CACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAGCCGACGA
715 CACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * *
30233 AACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCAGGATGCACAAGTCGGGGATCGACTGGGTC
780 AACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACTGGGTC
* * *
30298 CCCCTTGCATGCTGCTGATCCTGCTGCCACAACCCTCTATCTGGTCTAATC
845 CCCCCTGCATGCTGCCGATCCTACTGCCACAACCCTCTATCTGGTCTAATC
*
30349 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCACTA
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTA
* *
30414 TGCCGGCCACAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
66 CGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
30479 TCTTCATATTTCTACCCTACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
131 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * **
30544 GCCTTCATGTGAAGTTTCATGGCAAGGCGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTT
196 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * *
30609 TACGGTTTGGGATTTTTTTAAAATTTTTTGAAAAGTAGTTTTGGCCCCAAACTTGGTAGATGTGA
261 TACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGA
* *
30674 TCCTTGTATTTTTTTTGGTATGCACACAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
326 TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
* *
30739 TGACTATTTGAAAAAAGTGTCCCCATTTCAAACA-TTTAATGGCTACTGGCAGCAAACCTGTAAA
391 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
30803 ATCCCAAATGCTCTTTAAGAGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATA
456 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
*
30868 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGCCCCCCCAATCGTTGAA
521 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-GCCCCCCCAATCGTTGGA
*
30933 ACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCCGACAAAAAAATA
585 ACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCCGACAAAAAAA-A
*
30998 ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCATAACCCTCGGTCTGGTCTGATCTT
649 ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCTGGTCTGATCTT
* *** *
31063 ACACTGGGAATGAACTCCATATGCTTATTTTGGGAATGAACTCCGTATGCCTAAGTCAACCGACG
714 ACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * *
31128 AAATGAGTGTGTGGGCGCTCAGCCGACCAGAGGGGCAGGATGCACAAGCCGGGGATCGACTGGGT
779 AAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACTGGGT
* *
31193 CCCCCCTGCATGCTGCCGATCCTGCTACCACAACCCTCTATCTGGTCTAATC
844 CCCCCCTGCATGCTGCCGATCCTACTGCCACAACCCTCTATCTGGTCTAATC
*
31245 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCACTA
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTA
* * * * *
31310 TGTCGGCCATAGAGGCGGGATGCACAAGCCGTGAATCGATAGGGTGGTAGGTGGGT
66 CGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
31366 AGGTGCTGCC
Statistics
Matches: 4827, Mismatches: 498, Indels: 246
0.87 0.09 0.04
Matches are distributed among these distances:
871 11 0.00
872 41 0.01
873 38 0.01
874 121 0.03
875 154 0.03
876 200 0.04
877 110 0.02
878 59 0.01
879 19 0.00
880 42 0.01
881 44 0.01
882 189 0.04
883 253 0.05
884 290 0.06
885 269 0.06
886 473 0.10
887 458 0.09
888 50 0.01
889 11 0.00
893 271 0.06
894 530 0.11
895 90 0.02
896 470 0.10
897 231 0.05
898 398 0.08
899 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTA
CGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
TACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGA
TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGCCCCCCCAATCGTTGGAA
CCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCCGACAAAAAAAAAT
ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCTGGTCTGATCTTAC
ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACTGGGTCC
CCCCTGCATGCTGCCGATCCTACTGCCACAACCCTCTATCTGGTCTAATC
Found at i:38854 original size:12 final size:12
Alignment explanation
Indices: 38837--38869 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
38827 GAGGGATAGG
38837 GGGCCAATATAA
1 GGGCCAATATAA
38849 GGGCCAATATAA
1 GGGCCAATATAA
38861 GGGCCAATA
1 GGGCCAATA
38870 CCAGCACCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.39, C:0.18, G:0.27, T:0.15
Consensus pattern (12 bp):
GGGCCAATATAA
Found at i:39081 original size:26 final size:26
Alignment explanation
Indices: 39045--39097 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
39035 CTGGTCTGAT
39045 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
39071 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
39097 C
1 C
39098 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:39975 original size:26 final size:26
Alignment explanation
Indices: 39939--39989 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
39929 CTGGTCTGAT
*
39939 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
39965 CTTAGACTGGGAATGAACTCCGTAT
1 CTTACACTGGGAATGAACTCCGTAT
39990 TGCCTTAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:40287 original size:895 final size:893
Alignment explanation
Indices: 37429--50627 Score: 15076
Period size: 870 Copynumber: 14.9 Consensus size: 893
37419 TAACCCTTGG
*
37429 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
1 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
*
37494 GGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGC-AGCCGTGGATCGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
37558 GGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
131 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
37623 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
196 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
*
37688 TTTGAAACTTTTTACGGTT-GGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
261 TTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
37752 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT-AGCTAAAAACTCGAAGTG
326 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
37816 TACAGGATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
391 TACAGGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
37881 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
455 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
37946 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCGCCCC
520 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCACCCC
38010 CCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC----CTCCGACGATGGTGCCCCG
585 CCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
* * * * * * * *
38071 AGCGAAAAAAAAATGTGGCACCAGCACACGCTCGAGCCTAGCATGTGCACCTGCAACCCTTGGAC
650 GGCG-AAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCC-CGGTC
* * * * * *
38136 TAGT-TCGATCTTACACTAGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCATACGCCT
713 TGGTCT-GATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
38200 AAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAAGATACGCAAGCCGG
777 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGG
* * ** * ** * *
38265 GGGTCGATCGGGTCCCCCCCTGCATGCTGTTGATCCTGTTATCGTAACCCTCAG
842 GGATCGA-CGGGT-CCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAA
* * * *
38319 TCCGATCCAATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGC
1 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* * * *
38384 GGGCGGGCACTAAGTCGACCAAAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGT-GTAGGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * *
38448 GGTTTAGGCACATCTGCATATTTTTGCTATGCCAATGCCATTTTTATGGCTTGTAAATTTATACA
131 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
38513 ATGGTCCCTCAAGCCTTCATGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCATGATT
196 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * * *
38578 TTTGAAACTTTTTACGGTTCAAGATTTTTTT-AAACTTTTTCAGATGGATTTTTGG-CCCAAACT
261 TTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
* *
38641 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAAC-GGCAAGT
326 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-AAGT
* * *
38705 GTATAGGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACCTTAATGGCTACTGGCA
390 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
38770 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
455 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
38835 GGGGGCCAATATAAGGGCCAATATAAGGGCCAATACCAGCACCCATTGCACATCATGTGTGCACA
520 GGGGGCCAATATAAGGGCC-----AA--G----TACCAGCACCCATCGCACATCATGTGCGCACA
* * * * * * *
38900 ----CCGCCCCCTAATCGTCGGAACCCGAATGCCGTCGGTCAAGTTCTCCGGCGATGCTTCGGCG
574 CCCCCCACCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACG
* * * * * ** * *
38961 ATGGTGCCCTGGGCGAAAACAAATGCCGCACCAGTACATGCCTGAGCCCAGGTTGTGCCCCCACA
639 ATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCA
* *
39026 ACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTC
704 ACCC-CGGTCTGGTCTGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTC
* ** * *
39091 CGTATGCCTAAGTCAACCCACGGAACGAGCGTGC-GGCGCTCAATCGGCCAAAGGGGCAAGATGC
768 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGC
** * * * * *
39155 GCAAGCCGGGGATCGGTTGGGTCCCCCCTTGTGTGCTGTCGATTCTGCTACCACAACCCTCAA
833 GCAAGCCGGGGATC-GACGGGTCCCCCC-TGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAA
* * * * * * *
39218 TCCGGTCTGATTTTAGAATGGGAATGAACTCCGTTTGCCTAAGCCAACTGACGAAATGAGTGGGC
1 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* * * * *
39283 GGGCGAGCACTACACTGGCTAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
39348 GGTTTAGGCACATCTTCATATTTCTACCATGCGAATGCCTTTTTTATGGCTTGTAAATTCATACA
131 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
39413 ATGGTCCCTTAAGCCTTCATGTGAAGTTTTATGGCAAGACGACTCATTTTCTATTTTTCATGATT
196 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * * *
39478 TTTGAAACTTTTTACGGTTTGGGATTTTTTTAAACTTTTTTCAGAAGGATTTTTGGCCCCAAACT
261 TTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
*
39543 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
326 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
39608 TACAGGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGACACTTTAATGGCTACTGACAG
391 TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * ** *
39673 CAAACCTGTAAAATCTCAAATGCTCATTAAAGGACTGTGAGTTCTCAAGGTTTGATGAGGGATAG
456 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
39738 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATTTGCGCACACCCCCCACCCCC
521 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCACCCCC
* * **
39803 AAATCGTCGGAACCCCAAT-CTCGTCGGTAAGGTTCTCCGACGATGCTCCGACGATGGTGCCTTG
586 CAATCGTCGGAACCCCAATGC-CGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
* *
39867 GGTGAAAAAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCGC-ACCCCGGTCT
650 GGCG-AAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCCGGTCT
*
39931 GGTCTGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATTGCCTT
714 GGTCTGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTA-TGCCTA
* *
39996 AGTCAACCCACGGAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGG
778 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGG
* * * * * * *
40061 GATCGGACGGCTCCCCCCTGCATGCTACCAATCTTGTTGCTGCAACCCTCAA
843 GATC-GACGGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAA
** *
40113 TCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGC
1 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* * *
40178 GGGCGGGCATTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * **
40243 GGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCTTTTTTACAGCTTGTAAATTCATACA
131 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
40308 ATGGGCCCTTAAGCCTTCATGTGAAGTTTTATGGCAAGACGACTCATTTTCTATTTTTCATGATT
196 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * * *
40373 TTTGAAACTTTTTACGATTTGGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
261 TTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
*
40438 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
326 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
40503 TTCAGGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
391 TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * **
40568 CAAACCTATAAAATCTCAAATGTTCATTAAGGGACTGTGAGTTCTCGAGGTTTGATGAGGGATAG
456 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
40633 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTCCGCACACCCCCCACCCCC
521 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCACCCCC
* **
40698 CAATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCTTGG
586 CAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGG
* * ** * * *
40763 GC-AAAAAAAATTGTGGCACCAACACATGCTTGAGCCCAGCATCTGCACCTGCAACCCTTGGTCT
651 GCGAAAAAAAA-TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCC-CGGTCT
* * *
40827 GGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCTAA
714 GGTCTGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * *
40892 GTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCAGGG
779 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGG
* ** * *
40957 ATCGACCGGCTCCCCCCTGCGTGCTATCGATCCTGCTGCTGCAACCCTCAG
844 ATCGA-CGGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAA
** * * *
41008 TTTGATCCGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAAC-GGC
1 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
41072 GGGCGGGCACTACGCCGGCCAGAGAGGC-GGATG-GCAAGCCGTGGATCGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
41135 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
131 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
41200 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
196 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
41265 TTTGAAAC-TTTTAC-GTTCGAGA-TTTTTTAAAATTTTTTCA-AAGGAGTTTTGGCCCCAAACT
261 TTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
*
41326 TGGTAGACGTGATCCTTAGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGT
326 TGGTAGACGTGATCCTT-GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
41391 GTA-AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA-T-GTA
390 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
41453 GCAAACCTGTAAAATCTCAAATGCCCTTTAAAGGGGTGTGAGTTCTTCGAGGTTTGATGAGGGAT
455 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTGATGAGGGAT
* * * * *
41518 AGGGGGGCCAATATAAGGGCCAA-CACTAGCACCCATTGCACATCATGTGTGCACA--CCGC-CC
519 A-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCACC
* * * * ** * * *
41579 CCCTAATCGTTGGAACCCTAATGTCGTCAATCAGGTTCTCTGGCGATGCTTCGACGATGGTGCCC
583 CCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
* * * * *
41644 TGGGCGAAAACAAATGCGGCTCCAGCACATGCCTGAGCCCAGCATGTGCACCCACAACCCTCGGT
648 CGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCC-CGGT
* * *
41709 CTGGTCTGATCTTACCCTGGGAATGAACTCCGTTTGCTTAGACTGGGAATGAACTCCGTATGCCT
712 CTGGTCTGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* *
41774 AAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGG
777 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGG
* * * * *
41839 GGATCGACTGGGTCCCCCCTTGCATGCTGTCGATCTTGCTGCCACAACCCTCGA
842 GGATCGAC-GGGTCCCCCC-TGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAA
* * * * * * * * *
41893 TCTGGTCCAATCTTAGAATGGGAATGAACTCCGTTTGCCTAAGCCAATCGAGGAAATGAGCAGGT
1 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
** * * * * *
41958 GGGCAAGCACTACAG-CGACCAGAAATGCGGAATGCGTAAGCCGTGGATCGATAGGGTGGTAGGT
66 GGGCGGGCACTAC-GCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
** *
42022 GGGTTTATTCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAG
130 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
42087 AATGGTCCCTTAAGCCTTCATCTAAAGTTTCATGGCGAGACGACTCGTTTTCTATTTTTCATGAT
195 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* *
42152 TTTTGAAACTTTTTATGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
260 TTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
* * * * **
42217 TTGGTAGACATGATCCTTTTATTTTTTTTGGCATGCACAAAAAAATTAAGCTAAAAACTAAAAGT
325 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
42282 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
390 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
42347 GCAAACCTGTAAAAACTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGAATA
455 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * * *
42412 GGGGGCCAATATAAGGGCCATGCACCAGCACCAATCGCACATCATGTGCTCACACCCCCCGCCCC
520 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCACCCC
* * * * ** ** *
42477 CCAATTGTCGGAACCCCAATGCCATCGATCAGGTTCTCTGGTGATGCTCCGGTGATGGTGCCACG
585 CCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
* * * ** *
42542 GGCAAAAAAAAATGTGGCACCAGCACATGCCTGAGCCCAAAATGTGCACCCGTAA-CCC--TC--
650 GGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCCGGTCTG
* * ***
42602 G---G----T-C-C----AAT---C-T-G-AT-CTTACACTAGGAATGAACTTTATATGCCTAAG
715 GTCTGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * ** *
42647 TCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGGGGCATGATGCATAAGTCGGGGA
780 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
* * * * * * *
42712 TCGGTCGGGTCCCCTCTGCATGCTGCCGATCCTACTGTCGCAACCTTCCA
845 TC-GACGGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAA
* ** * ** * * *
42762 TCTGGTCTAATCTTAGATTGGGAATGAACTAGGTATGCCTATGCCAACCGATGAAATGAACGGGC
1 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A--AACGAGC
* * * * *
42827 AGGCGGGCACTATGCCGGCCAAAAAGGCGGGATACGCTGGCCAGAAAGGCGGGATGTGCAAGTCG
62 GGGCGGG--C---G--GG-C----A--C----TACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
**
42892 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATCATGCCAATGCCATTT
109 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
*
42957 TTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
174 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* ** * *
43022 TCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTCGAGATTTTTTTAAACTTTTTTCA
239 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCA
43087 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
304 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
43152 ATTCAGCTAAAAAATCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
369 ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * **
43217 ACACTTTAATGGCTACTGGCTGTAAACCTGTAAAATCTCAAATGCTCATTAAGGGACTGTGAGTT
434 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * * *
43282 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACTAGCATCGATCACACATCA
499 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * **
43347 TGTGCGCACACCCCCCCGCCCCCCCAATCGCCAGAACCCCAATGCCGTCGGTCAGGATATCCGGT
564 TGTGCGCACA-CCCCCC-ACCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
* * * *
43412 GA-GGTCCGACGATGGTTCCTCGGGTGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
627 GATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * *
43476 CGTGCACCCACAACCCC---C--G---G----T---CT-GG--T----TT-G-AT-CTTACACTG
692 TGTGCACCCGCAACCCCGGTCTGGTCTGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTG
* * *
43516 GGAATGAACTCCGTATGCCTAAGTCAACCTATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAG
757 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * * * *
43581 GCGCAGGATGCGCAAGCCGGGGATCGGCCGGCTCCCCCTTACGTGCTACCGATCCTGCTGCTGCA
822 GGGCAGGATGCGCAAGCCGGGGATC-GACGGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCGCA
43646 ACCCTCAA
886 ACCCTCAA
* * *
43654 TTCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
1 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* **
43719 GGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATTAATAGGGTGGTAGGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
43784 GGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACA
131 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
43849 ATGGTCCCTTAAGCCTTCATGTGAAGTTTTATGGCAAGACGACTCATTTTCTATTTTTCATGATT
196 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * * * * *
43914 TTTGAAACTTTTTACAGTTTGGGATTTTTTAAAAAATTTTTCAGAAGAAGTTTTGGCCCCAAACT
261 TTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
*
43979 TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
326 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
44044 TATAGGATTTTGTGACTATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAG
391 TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
44109 TAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
456 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * *
44174 GGGGCCAATATAAAGGCCAAGTATCAGCACCCATCGAACATCATGTGCGCACACCCCCTACCCCC
521 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCA-CCCC
* ** * * * * * *
44239 CCAATCGTCGGAACCCCAATGTCGTCGGTCAACTTCTCTGACGATTCTTCGATGATGGTTCCCCA
585 CCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
* * ** *
44304 GGCG-AAAAAAATGCAGCACCAGCAAATGCCTAAGCCCAGCATGTGCACCCACAACCCTCGGTCT
650 GGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCC-CGGTCT
** * * *
44368 GGTCCAATGTTACACTGGGAATGAACTTCGTATCCTTAGACTGGGAATGAACTCCTTATGCCTAA
714 GGTCTGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
44433 GTCAACCCACGAAACGAGCGTGCGGGCACTCAGCTGGCCAGAGGGGCAGGATGCGCAAGCTGGGA
779 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGG
* * * * * *
44498 ATCGATCGGGTCCCCCCTGAGTGCTACCGATCCTGCTACCACAACCCTTAG
844 ATCGA-CGGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAA
** * * * * * * *
44549 TCCAATCCAATCTTAGACTGAGAATTAACTCCGTATGCCTAAGCTAACCAATGAAACGAGCAGGC
1 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* * *
44614 GGGCAGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
44679 GGTTTAGGCACATCTTCATATTTCTACTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
131 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
44744 ATGGTCCCTCAAGCCTTCATCTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
196 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * *
44809 TTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCGGAAGGAGTTTTGGCCCGAAACT
261 TTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
** * * ******* * ** *
44874 TGGTAGACGTGATCCTTG-A--AGTG-T-ACA-GGATTTTGGGA-CCATTTGAAAA----AAGTG
326 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*** ** * *** * * ** *** * * ** *
44928 T-CCCCA-TTT-CAAACACTTT-AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT-GC-AT
391 TACAGGATTTTGTGACCA-TTTGAA--AAAAGTGTCCCCATTTCAG--ACA-CTTTAATGGCTAC
** **** * ** * * * * * ** * *
44987 TTTCAG--GGGGTGTGAGTTTTC-AA-GGT-TTGATGAGGGATAG-G-GGGC-C-A---AT-ATA
450 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGGT-GTGAGTTCTCGAGGTTTGATG
** * ** ** * ** * * * * *
45039 AGGGCCA-TGCACCAGCACCAATCGCACATCATGCACTCA-CACTCGCCTGCCCCCCCAATC-TC
513 AGGGATAGGGGGCCAATA-TAAGGGC-CA--A-GTAC-CAGCAC-C-CAT---CGCAC-ATCATG
*** ** * * ** *
45101 TG-G-A-A--CCCCA-ATGCC-ATCGGTCAGGTTCTCCGATGATGCTCCGG-CATGGTGC-CCTG
566 TGCGCACACCCCCCACCCCCCAATC-GTC-GGAACCCCAATGCCG-T-CGGTCA-GGTTCTCC-G
* **** ** *
45157 --GGTG-AAAAAAAAT-GTG---C---C-------A--------CCAGCACATGCTCGAGCCCAG
625 ACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
*
45197 CATGTGCACCCGCAA-CCC--TC--G---G----T-C-C--GG--T---C--CG-AT-CTTACAC
690 CATGTGCACCCGCAACCCCGGTCTGGTCTGATCTTACACTGGGAATGAACTTCGTATGCTTAGAC
* * * * * * * *
45237 TAGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAACGTACGGGCGCTCAGCCGACTAG
755 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
** * * * *
45302 AGGGGCAGGATGCATAAG-CGGGGATTGGTCGGGTCCCCTCCTACGTTCTGCCGATCCTGCTGCC
820 AGGGGCAGGATGCGCAAGCCGGGGA-TCGACGGGTCCCC-CCTGCGTGCTGCCGATCCTGCTGCC
*
45366 GCAACCCTCCA
883 GCAACCCTCAA
* * * * * *
45377 TCTGGTCTGATCTTATACTAGGAATGAACTCCGTATGCCTATGCCAACCGACGAAACGAGTGGGC
1 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
45442 GGGCGGGCACTACATCGGCCAGAAAGGCGGGATACGCCAGCCAGAAAGGCGGGATACGCCAGCCA
66 GGGCGGGCACT--A-C-G-C-------C--G----GCCAG--AG--AGGCGGGAT------G-C-
*
45507 GAAAGGCGGGATACGCCAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATCT
101 -----GC---A-A-GCC-G---TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
45572 TTCTGTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
152 TTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
* * *
45637 TGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTATGGTTCG
217 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG
** * * *
45702 AGATTTTTTTTTTAATTTTTTCAAAATGAGTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTA
282 AGA-TTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* *
45767 TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAGGATTTTGTGACCATT
346 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATT
* *
45832 TGAAAAAAGTGTCCCCATTTCAAATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
411 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* * * *
45897 CGCTCTTTAAGGGGGTGTCAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAATTTAAGGGCCAA
476 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * ** *
45962 GTACCAGCACCAATCGCACATCATGCGCTCACACCCCCTGCCCCCCAATC-TCCGGAACCACAAT
541 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCACCCCCCAATCGT-CGGAACCCCAAT
* ** * *
46026 GCCATCGGTCAGGTTCTCCGACGATGCTCCGGTGATAGTGCCCCGGGCGAAAAAAAATGTGGCAC
605 GCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGCGGCAC
*
46091 CAGCACATGCCCGAGCCCAGCATGTGCACCCACAA-CCC--TC--G---G---TT---C--GG--
670 CAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCCGGTCTGGTCTGATCTTACACTGGGAA
* * *
46138 T---C--CG-AT-CTTACACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGT
735 TGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * **
46196 GCGGGCGCTCAGCCAGCCAGAGGGGCAAGATGCGCAAGCCAGGGATCAGTTGGGTCCCCCCTGCG
800 GCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATC-GACGGGTCCCCCCTGCG
* * * ***
46261 TGCTGTCGATCTTGCTACCGCAACCCTTGG
864 TGCTGCCGATCCTGCTGCCGCAACCCTCAA
* * ** ** * *
46291 TCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAATAGAAAAAATGAGTGGGC
1 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* * * * * * * *
46356 GGGCAGGAACCATGCCGGCTAGAGAGGCGGGATGCGCAAGTCATGGATTGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * **
46421 GGTTTAGGCACATCTTCATATTTCTACCATGCCATTGGCATTTTTACAGCTTGTAAATTCATACA
131 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
46486 ATGGTCCCTTAAGCCTTCATGTGAAGATTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
196 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * *
46551 TTTGAAACTTTTTATGATTCGAGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
261 TTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
*** * *
46616 TTCCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGTTAAAAACTCGAAATG
326 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
46681 TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
391 TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
46746 CAAGCCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
456 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
46811 GGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCTCATCATGTGCGCACATCCCGCCCGCCC
521 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC-CCC-ACC
* *
46876 CCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCC
583 CCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
*
46941 CGGGTGAAAAAAAATGCGG--CC--CACA------A--CC--C---T-------------CGGTC
648 CGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCCGGTC
* * * * * * *
46976 TAGTCCGATCTTACACTGGGAATGAACTCCGTATGTTTAGACTGAGAATGAACTCCATATGCCCA
713 TGGTCTGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
47041 AGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAACCAGG
778 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGG
* * * * * * *
47106 GTTCGGTCGGGTCCCCTCTGCGTGCTGCGGA-CCTTGCTACCGCAACCCTTAG
843 GATC-GACGGGTCCCCCCTGCGTGCTGCCGATCC-TGCTGCCGCAACCCTCAA
* * *
47158 TCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCGACGAAACGAGCGGGC
1 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* * **
47223 GGGCGGGCACTACACCGGCCAAAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
47288 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCTTTTTTATGGCTTGTAAATTGATACA
131 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
47353 ATGGTCCCTTAAGCCCTCATGTGAAGTTTGATGGCAAGACAACTCGTTTTCTCTTTTTCATGATT
196 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * * *
47418 TTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTTAGAAGGATTTTTGGCCTCAAAAT
261 TTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
*
47483 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTG
326 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
47548 TACAGGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
391 TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
47613 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGAGAG
456 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * * *
47678 GGGGCCAATATTAGGGCCAAGTA-CAGAACCCATCACACATCATGTGCGTACA----CC-CCCCG
521 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCACCCCC
* ***
47737 C---C--C----CCCCAATGCTGTCGGTCAGGTTCT-C--CG--G-T-----GATGGTGCCGTAG
586 CAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGG
* * * * * *
47782 GCGAAAAAAAATGCGGCACAACCACATGCCCGAGCCTAGCATATGCACCCACAACCCTCGGTCCG
651 GCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCC-CGGTCTG
*
47847 GTCTGATCTTACA-TAGGGAATGAAC-TCTGTATGCTTAGATTGGGAATGAACTCCGTATGCCTA
715 GTCTGATCTTACACT-GGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
47910 AGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAA-CTCAG
778 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGC-CGG
* ** ** **
47974 GGATCGATCGGGTCCCCCCCTGTGTGCTGTAGATCCTGCTGCCGTGACCCTCGG
842 GGATCGA-CGGGT-CCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAA
* * * * * * *
48028 TCTGGTCCAATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAACGGGT
1 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* *
48093 GGGCGAGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
** * * * *
48158 GGCATAGGCACATCTTCATATTTTTACCGTGCCAATGCCATTTTTATGACTTGTAAATTCATACA
131 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
48223 ATGGTCCCTTAAGCCTTAATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATT
196 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-T
* *
48288 TTTTGAAACTTTTTACGGTTTGAGATTTTTTGAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
260 TTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
* * *
48353 TTGGT-GACGTGATCTTTGTATTTTTGTTGGCATGCACAAAATAATTCAGCTAAAAACTCAAAGT
325 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
** * *
48417 GTATTGGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGAA
390 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
48482 ACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA
455 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * ** *
48547 GGGGGAGCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGCACGCACACCCCCCTGCC
520 GGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-ACC
* * *
48612 CCCCAATCGTCGGAACCTCAATGCCATCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCC
583 CCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
* * * * * *
48677 CGAGCG-AAAAAAATACGGCACCAGCAAATGCCTGAGCCCAACATGTGCACCCGTAA--CC---C
648 CGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCCGGTC
*
48736 ---TC-GA---T-C-C---G-AT---C-T-G-AT-CTTACACTGGGAATGAACTCCGTATGCCTA
713 TGGTCTGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * **
48781 AGTCAACCTACGAAACGAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCAGGATGC-CCATTCGGG
778 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGG
* * **
48845 GATCGACCGAGTCCCCCCTGCGTGCTGCC-ATTCCTGCTACCGCAACCCTCGG
843 GATCGA-CGGGTCCCCCCTGCGTGCTGCCGA-TCCTGCTGCCGCAACCCTCAA
* * * * * * ** * * *
48897 TCTGGTCTGATCTTAGAGTAGGAATAAACTCCATATGTGTAAGCCAACTGACAAAACAAGCGGGC
1 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* * * * * *
48962 GGGCGGGCATTGCGCAGGCTAGAGAGGCGGGATACGAAAGCCGTGGATCGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
49027 AGTTTTGGCACATCTTCATATTTCTGCCACGCCAATGCCATTTTTATTGGCTTGTAAATTCATAC
131 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTA-TGGCTTGTAAATTCATAC
**
49092 AATGGTCCCTTAAATCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
195 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * * *
49157 TTTCGAAACTTTTTACGATTCGAGATGTTTTCAACATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
260 TTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
* *
49222 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAATAATTCAGCTAAAAACTCGAAGT
325 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
49287 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
390 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
49352 GTAAACCTGTAAAATCTCAAATGCTCTTTAACGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
455 GCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
49417 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGACACCCCCCACCC
519 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCA-CC
* *
49482 CCCCAATCGCCGGAACCCCAATGCCG-CTGGTCA-G-T-T-------T-CTCCGATGATGGTGCC
583 CCCCAATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
* * *
49535 CC-GGCGAAAAAAATAT--GGCACCAACACATGCCCGAGCCCAGCATGTGCACCTGCAACTCTCG
647 CCGGGCGAAAAAAA-ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAAC-CCCG
* * * * *
49597 GTCCGGTCTGAGCTTAACACCTGGGAAATG-ACTCTTGTATGCTTAGACTAGGAATGAACTCCAT
710 GTCTGGTCTGATCTT-ACA-CTGGG-AATGAACT-TCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * * *
49661 ATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTTAACCGACCAAAGGGGCAGGATGAC-C
771 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATG-CGC
* * * * *
49725 AAGCCGGGGATCGATCGGGTCCCCCCTACGTGCTGTCGATCCTACTGCCACAACCCTCGA
835 AAGCCGGGGATCGA-CGGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAA
** * * *
49785 TCCGGTTTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGCGGGT
1 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* * * *
49850 GGTCGGGCACTATGCCGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
** *
49915 GGTTTAGGCACATCTTCATATTTCTGCTGTGCCAATGCCATTTTTGTGGCTTGTAAATTCATACA
131 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
49980 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGTAAGATGACTCATTTTCTATTTTTCACGATT
196 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* *
50045 TTTGAAACTTTTTACGGTTCGAGATTTTTTGAAAATTTTTTCAGAAGGAGTTTTGGCGCCAAACT
261 TTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
*
50110 TGGT-GACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTG
326 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * *
50174 TGCAGGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAA
391 TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
50239 CAAACCTGTAAAATCTCAATTGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGTGATAG
456 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
50304 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCACCCCCCACC
521 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG--CGCA-CACCCCCCACC
* * * ** * * *
50369 CCTCCAATCGTCGGAACCCCAATGCCGCCGATCAAGTTCTCCGGTGATGCTTCGGCAATGGTGCC
583 CC-CCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
* * * * * * * * *
50434 CCGGGTGAAAAAAAATGTGGCACCAGCACATGCTCAAGCCTAGCGTGTGCGCCCGCGACCCTCGA
647 CCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCC-CGG
** * *
50499 TCCAGTC-GAATCTTGCACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
711 TCTGGTCTG-ATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
50563 CTAAGTAAACCCATGAAACGAGTGTGCGGGTGCTCAGTCGGCCAGAGGGGCAGGATGCACAAGCC
775 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC
50628 TGGTGTCACG
Statistics
Matches: 10539, Mismatches: 1347, Indels: 838
0.83 0.11 0.07
Matches are distributed among these distances:
827 13 0.00
828 165 0.02
829 2 0.00
830 3 0.00
831 1 0.00
832 2 0.00
833 1 0.00
835 1 0.00
837 2 0.00
838 25 0.00
839 1 0.00
840 3 0.00
841 1 0.00
842 5 0.00
843 2 0.00
844 1 0.00
845 2 0.00
846 5 0.00
847 1 0.00
848 5 0.00
849 23 0.00
850 12 0.00
852 2 0.00
853 5 0.00
854 31 0.00
855 3 0.00
856 2 0.00
857 1 0.00
858 45 0.00
859 23 0.00
860 8 0.00
861 1 0.00
862 2 0.00
863 3 0.00
864 1 0.00
865 2 0.00
866 29 0.00
867 619 0.06
868 16 0.00
869 804 0.08
870 1501 0.14
871 209 0.02
872 275 0.03
873 77 0.01
874 13 0.00
875 14 0.00
876 17 0.00
877 18 0.00
878 20 0.00
879 15 0.00
880 19 0.00
881 13 0.00
882 26 0.00
883 20 0.00
884 266 0.03
885 188 0.02
886 238 0.02
887 305 0.03
888 537 0.05
889 268 0.03
890 330 0.03
891 601 0.06
892 534 0.05
893 110 0.01
894 184 0.02
895 1355 0.13
896 264 0.03
897 88 0.01
898 105 0.01
899 196 0.02
900 323 0.03
901 86 0.01
902 208 0.02
903 1 0.00
906 1 0.00
909 1 0.00
910 1 0.00
912 1 0.00
914 222 0.02
915 16 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
TTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCACCCCC
CAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGG
GCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCCGGTCTGG
TCTGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
CGACGGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAA
Found at i:40871 original size:26 final size:26
Alignment explanation
Indices: 40835--40887 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
40825 CTGGTCTGAT
40835 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
*
40861 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
40887 C
1 C
40888 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:45486 original size:22 final size:22
Alignment explanation
Indices: 45459--45528 Score: 140
Period size: 22 Copynumber: 3.2 Consensus size: 22
45449 CACTACATCG
45459 GCCAGAAAGGCGGGATACGCCA
1 GCCAGAAAGGCGGGATACGCCA
45481 GCCAGAAAGGCGGGATACGCCA
1 GCCAGAAAGGCGGGATACGCCA
45503 GCCAGAAAGGCGGGATACGCCA
1 GCCAGAAAGGCGGGATACGCCA
45525 GCCA
1 GCCA
45529 TGGATCGATA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.31, C:0.29, G:0.36, T:0.04
Consensus pattern (22 bp):
GCCAGAAAGGCGGGATACGCCA
Found at i:47883 original size:26 final size:26
Alignment explanation
Indices: 47854--47906 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
47844 CCGGTCTGAT
*
47854 CTTACATAGGGAATGAACTCTGTATG
1 CTTACATAGGGAATGAACTCCGTATG
* *
47880 CTTAGATTGGGAATGAACTCCGTATG
1 CTTACATAGGGAATGAACTCCGTATG
47906 C
1 C
47907 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACATAGGGAATGAACTCCGTATG
Found at i:56994 original size:26 final size:26
Alignment explanation
Indices: 56958--57010 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
56948 CCAGTCCAAT
56958 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
56984 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
57010 C
1 C
57011 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:57351 original size:158 final size:159
Alignment explanation
Indices: 56984--57351 Score: 497
Period size: 159 Copynumber: 2.3 Consensus size: 159
56974 ACTCCGTATG
56984 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGC
* * ** * * * * **
57049 CAGCCATAGGGGTAGCATGCGCAAGCCGGGGATTGATCGGGTCCCCCCCTGTGTGCTGTCGATCC
66 CAACCAGAGGGCAAGCATGCACAAGCCGGGGATGGATCAGGTCCCCCCCTGCGTGCTACCGATCC
** * *
57114 TACTACCGTAACCCTCGGTCTGGTTTGAT
131 TACTACCACAACCCTCAGTCTGGTCTGAT
* *
57143 CTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGC
*
57208 CAACCAGAGGGCCAAG-ATGCACAAGCCGGGGATGGGTCAGGT-CCCCCCTGCGTGCTACCGATC
66 CAACCAGAGGG-CAAGCATGCACAAGCCGGGGATGGATCAGGTCCCCCCCTGCGTGCTACCGATC
*
57271 CTGCTACCACAACCCTCAGTCTGGTCTGAT
130 CTACTACCACAACCCTCAGTCTGGTCTGAT
* * * * * *
57301 CTTAGACTGGGAATGAACTCTGTGTGCCTAAGCCAATCGACGAAACGAGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCG
57352 GGCAGGCGGG
Statistics
Matches: 182, Mismatches: 26, Indels: 3
0.86 0.12 0.01
Matches are distributed among these distances:
158 86 0.47
159 94 0.52
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGC
CAACCAGAGGGCAAGCATGCACAAGCCGGGGATGGATCAGGTCCCCCCCTGCGTGCTACCGATCC
TACTACCACAACCCTCAGTCTGGTCTGAT
Found at i:59314 original size:869 final size:864
Alignment explanation
Indices: 57123--60668 Score: 4140
Period size: 881 Copynumber: 4.1 Consensus size: 864
57113 CTACTACCGT
* * *
57123 AACCCTCGGTCTGGTTTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAA
1 AACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * * *
57188 TGAGCGTGCGGGCACTCAGCCAACCAGAGGGCCAAGATGCACAAGCCGGGGATGGGTC-AGGTCC
66 TGAGCGTGCGGGCGCTCAACCAACCAGAGGGGCAGGATGCCCAAGCCGGGGATCGATCGA-GTCC
* * * *
57252 CCCCTGCGTGCTACCGATCCTGCTACCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGA
130 CCCCTGCGTGCTACCAATCCTGCTACCACAACCCTCAATCCGGTCTGATCTTAGACTAGGAATGA
* * * * * * *
57317 ACTCTGTGTGCCTAAGCCAATCGACGAAACGAGCGG-GCAGGCGGGCTCTACGCCGGCCAAAGTG
195 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAG--GGTGGGCACTACGCCGGCCAGAGAG
* * * *
57381 GCAGGATGCGCAAGCCGTGAATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTG
258 GCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
* * * *
57446 CCATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGTTCCCTTAATCCTTCATGCGAAG
323 CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCATGTGAAG
* * * * *
57511 TTTCATGGCAAGACGACTCGTTTGCTATTTTTCACGATTTTC-AAAATTTTTATGGTTCGAGATT
388 TTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGAGATT
*** * *
57575 TTTTCAAAATTTTTTCAGAAGGAGTTTTGGCCCTGCA-TTCGGTAGACATGATCCTTGTATGTTT
453 TTTTCAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT-GGTAGACGTGATCCTTGT-TTTTT
* * *
57639 T-TTGACATGCACAAAAACATTCAGCTAAACACTCAAAGTGTACAGGATTTTGTGACCATTTAAA
516 TGTTGGCATGCACAAAAA-ATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAA
*
57703 AAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
580 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* *
57768 CTTTAA-GGGGTGTGAATTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
645 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * ** * ** *
57832 CAGCACCCATCACACATCACGTGCGCACA-------CCCCCTAATCGGTGGAACCCCAATACCGT
710 CAGCACCCATCGCACATCATGCACGCACACCCCCCGCCCCCCAATCGCCGGAACCCCAATGCCGT
* * * * * *
57890 CGGTCAGGTTCTTCGACGATGCTCAGGCGATGGTGCCCCATGTGAAAAAAAAATGTGCCACCAGC
775 CGGTCAGGTTC-T-GATGATGCTCCGACGATGGTGCCCC--GGGAGAAAAAAATGTGGCACCAGC
*
57955 ACATGCCCGAGCCCAGCACGTGCACCCGC
836 ACATGCCCGAGCCCAGCATGTGCACCCGC
* * * *
57984 AACCCTTGGTCCAGTCTGATCTTACACTGGGACTGAACTCCATATGCTTAGACTGGGAATGACTC
1 AACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGC-----CT----A--A---
* * * * * * *
58049 CGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGAATGCGCAAGTCGGG
52 -GTCAACCCACGAAATGAGCGTGCGGGCGCTCAACCAACCAGAGGGGCAGGATGCCCAAGCCGGG
* * * ** ** * *
58114 GATCGA-CTGGGTCACCCCCTGCCTGCTACCAATCCT-ATCACCGTAACCCTTGATCCAGTAC-A
116 GATCGATC-GAGTC-CCCCCTGCGTGCTACCAATCCTGCT-ACCACAACCCTCAATCCGGT-CTG
* * * * * * * * *
58176 ATCTTAGATTAGGAATGAAATTCGTATGCCTAAGCCAACCGACGAAATGAACGGGCGGGCGAGCG
177 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGAGGGTGGGCA
* * * *
58241 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGCTTAGGC
241 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* ** * *
58306 ACATCTTCATATTTTTGCTGTGCCAATGCCATTTTTATGACTTGTAAATACATACAATGGTCCCT
306 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
58371 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACG
371 TAAACCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAACT
*
58436 TTTTACGGTTCGAGATTTTTTGAAAATTTTTTCAGAAGGAGTTTTGG-CCCAAACTTGGT-GACG
436 TTTTACGGTTCGAGATTTTTTCAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* **
58499 TGATCTTTGTTTTTTTGTTGGCATGCACAAAATAATTCAGCTAAAAACTCAAAGTGTATTGGATT
501 TGATCCTTGTTTTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCAAAGTGTACAGGATT
* *
58564 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAACAAACCTGT
565 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
58629 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGAGCAA
630 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-CCAA
* *
58694 TATAAGGGCCAAGTACCAGTACCCATCGCACATCATGCACGCACACCGCCCCGCCCCCCAATCGT
694 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCACGCACACC-CCCCGCCCCCCAATCGC
* * * * *
58759 CGAAACCCAAATGCCATCGGTCAGGTTCTCTGATGATACTCCGACGATGGTGCCCCGGGCGAAAA
758 CGGAACCCCAATGCCGTCGGTCAGG-T-TCTGATGATGCTCCGACGATGGTGCCCCGGGAGAAAA
* * *
58824 AAATGTGGCACCAGCAAATGCCTGAGCCCAACATGTGCACCCGC
821 AAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGC
*
58868 AACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAA
1 AACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * ** * *
58933 TGAGCGTGTGGGTGCTCAACCGGCCAGAGGGGTAGGATGCCCATGCCGGGGATCGATCGAGTCCC
66 TGAGCGTGCGGGCGCTCAACCAACCAGAGGGGCAGGATGCCCAAGCCGGGGATCGATCGAGTCCC
* * * *
58998 CCCTGCGTGCTGCCAATCCTGCTACCGCAACCCTCAATCTGGTCTGATCTTAGAGTAGGAATGAA
131 CCCTGCGTGCTACCAATCCTGCTACCACAACCCTCAATCCGGTCTGATCTTAGACTAGGAATGAA
* ** * * * * *
59063 CTCCATATGTGTAAGCCAACTGAC-AAAGCGAGCGGAAGGGTGGGTACTGCACCGGCTAGAGAGG
196 CTCCGTATGCCTAAGCCAACCGACGAAA-CGAGCGG-AGGGTGGGCACTACGCCGGCCAGAGAGG
* * * * * *
59127 CGGGATACGAAAGCCGTGGATCGATAGGGTAGTAGGTGGGTTTTGGCAAATCTTCATATTCCTGC
259 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* *
59192 CACGCCAATGCCATTTTTATTGGCTTGTAAATTCATACAATGGTCCCTTAAATCTTCATGTGAAG
324 CATGCCAATGCCATTTTTA-TGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCATGTGAAG
* * *
59257 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATG
388 TTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGAGATT
* *
59322 TTTTCAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTG-TATTTTG
453 TTTTCAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTTTTTTTG
* *
59386 TTGGAATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAA
518 TTGGCATGCACAAAA-AATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAA
* *
59451 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAGTGCTCT
582 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
59516 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
647 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
** * *
59581 GCACCCATCGCACATCATGTGCGGACACCCCCC-CCCCCCAATTGCCGGAACCCCAATGCCG-CT
712 GCACCCATCGCACATCATGCACGCACACCCCCCGCCCCCCAATCGCCGGAACCCCAATGCCGTC-
* **
59644 GGTCA-G----G-T--T-CTCCGATGATGGTGCCCCGGGAGAAAAAAATACGGCACCAGCACATG
776 GGTCAGGTTCTGATGATGCTCCGACGATGGTGCCCCGGGAGAAAAAAATGTGGCACCAGCACATG
*
59700 CCCGAGCCCAGCATGTGCACCTGC
841 CCCGAGCCCAGCATGTGCACCCGC
* *
59724 AACTCTCGGTCCGGTCTGAGCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATTAACT
1 AACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAA--C----T-C-----C---G--------
* * * * * *
59789 CCATATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGTTTAATCGACCAAAGGGGCAGGATG
43 ---TATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAACCAACCAGAGGGGCAGGATG
* * * * ** * * * *
59854 ACCAAGTCGGGGATCGATCGGGTCCCCCCTACGTGCTGTCGATCCTACTGCCACAACCCTCGATC
105 CCCAAGCCGGGGATCGATCGAGTCCCCCCTGCGTGCTACCAATCCTGCTACCACAACCCTCAATC
* * *
59919 CGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAACGAGCGG-GTG
170 CGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAG-G
* * *
59983 GTCGGGCACTACGCCGGCCAGAGAGGCGAGATGCGCAAGTCGTGGATCGATAGGGTGGTAAGTGG
234 GT-GGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
60048 GTTTAGGCACATCTTTATATTTCTGCCATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAA
298 GTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * * **
60113 TGGTCCCTGAAGCCTTCATGTGAAGTTTCATGGTATGACGACTCATTTTCTATTTTTCACAAATT
363 TGGTCCCTTAAACCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCA-TGATT
* *
60178 TT-GAAACTTTTTACGGTTCAAGATTTTTTGAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
427 TTCGAAACTTTTTACGGTTCGAGATTTTTTCAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
* * *
60242 TGGT-GACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTG
492 TGGTAGACGTGATCCTTGTTTTTTTGTTGGCATGCA-CAAAAAATTCAGCTAAAAACTCAAAGTG
* **
60306 TACAGGATTTTGTGACCGTTTGAAAAGGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
556 TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
60371 CAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAA
621 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
60436 AGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCACCCCCCGCC
686 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA--TGCACGCA-CACCCCCCGCC
* * * * * * * *
60501 CCTCCAATCACCGGAACCCCAATGCTGCCGATCAAGTTCTCCAGTGATGCTTC-AGCAATGGTGC
748 CC-CCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT-GA-TGATGCTCCGA-CGATGGTGC
* **
60565 CCCGGGCGAAAAAAAATGTGGCACCAGCACATGATCGAGCCCAGCATGTGCACCCGC
809 CCCGGGAG-AAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGC
* *
60622 AACCCTCGGTCCAGTC-GAATCTTGCACTGGGAATGAACTCCGTATGC
1 AACCCTCGGTCCGGTCTG-ATCTTACACTGGGAATGAACTCCGTATGC
60669 TTAGACTGGG
Statistics
Matches: 2289, Mismatches: 297, Indels: 187
0.83 0.11 0.07
Matches are distributed among these distances:
856 98 0.04
857 1 0.00
858 1 0.00
859 1 0.00
860 1 0.00
861 41 0.02
862 1 0.00
863 1 0.00
866 4 0.00
867 34 0.01
868 169 0.07
869 239 0.10
870 183 0.08
871 12 0.01
872 6 0.00
873 1 0.00
875 7 0.00
876 198 0.09
877 294 0.13
878 96 0.04
879 3 0.00
880 13 0.01
881 340 0.15
882 256 0.11
883 8 0.00
884 96 0.04
885 4 0.00
886 77 0.03
887 4 0.00
888 2 0.00
891 1 0.00
892 1 0.00
894 1 0.00
896 3 0.00
897 18 0.01
898 74 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (864 bp):
AACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
TGAGCGTGCGGGCGCTCAACCAACCAGAGGGGCAGGATGCCCAAGCCGGGGATCGATCGAGTCCC
CCCTGCGTGCTACCAATCCTGCTACCACAACCCTCAATCCGGTCTGATCTTAGACTAGGAATGAA
CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAGGGTGGGCACTACGCCGGCCAGAGAGGCG
GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCATGTGAAGTTT
CATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGAGATTTTT
TCAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTTTTTTTGTTG
GCATGCACAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGT
GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
CCATCGCACATCATGCACGCACACCCCCCGCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCA
GGTTCTGATGATGCTCCGACGATGGTGCCCCGGGAGAAAAAAATGTGGCACCAGCACATGCCCGA
GCCCAGCATGTGCACCCGC
Found at i:59795 original size:26 final size:26
Alignment explanation
Indices: 59743--59796 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
59733 TCCGGTCTGA
**
59743 GCTTACACTGGGAATGAACTCTGTAT
1 GCTTACACTGGGAATGAACTCCATAT
* *
59769 GCTTAGACTGGGAATTAACTCCATAT
1 GCTTACACTGGGAATGAACTCCATAT
59795 GC
1 GC
59797 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (26 bp):
GCTTACACTGGGAATGAACTCCATAT
Found at i:61034 original size:158 final size:158
Alignment explanation
Indices: 60668--61034 Score: 409
Period size: 158 Copynumber: 2.3 Consensus size: 158
60658 ACTCCGTATG
* * * *
60668 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAGTGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
60733 CAGCCATAGAGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCCTGTGTGTTGCCGATCCT
66 CAGCCAGAGAGGCAGGATGCACAAGCCGGGGATCGATCCGGTCCACCCTGCGTGCTACCGATCCT
* *
60798 ACTACCATAACCCTCGGTCCGGTTCGAT
131 ACTACCACAACCCTCAGTCCGGTTCGAT
* * * * *
60826 CTTACACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCGGGCGCTTAG-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * *
60890 CAGGCCAGAG-GGCCATGATGCACAAGTCGGGGATC-AGTCCGGTCCACCCTGCGTGCTATCGAT
66 CA-GCCAGAGAGG-CAGGATGCACAAGCCGGGGATCGA-TCCGGTCCACCCTGCGTGCTACCGAT
* *
60953 CCTGCTACCGCAACCCTCAGTCCGG-TCTGAT
128 CCTACTACCACAACCCTCAGTCCGGTTC-GAT
* ** * **
60984 CTTAGATTGGGAATGAACTTTGTATGCCTAAGCCAACTGATGAAACGAGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
61035 GGTGAGCGGG
Statistics
Matches: 172, Mismatches: 33, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
157 7 0.04
158 165 0.96
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CAGCCAGAGAGGCAGGATGCACAAGCCGGGGATCGATCCGGTCCACCCTGCGTGCTACCGATCCT
ACTACCACAACCCTCAGTCCGGTTCGAT
Found at i:62611 original size:26 final size:26
Alignment explanation
Indices: 62573--62625 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
62563 CTGATCCGAT
62573 CTTACACTAGGAATGAACT-TCGTATG
1 CTTACACTAGGAATGAACTCT-GTATG
* *
62599 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTAGGAATGAACTCTGTATG
62625 C
1 C
62626 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCTGTATG
Found at i:63505 original size:25 final size:26
Alignment explanation
Indices: 63471--63522 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
63461 CTGATCTGAT
63471 CTTACACTGGGAATGAAC-TCGTATG
1 CTTACACTGGGAATGAACTTCGTATG
*
63496 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTTCGTATG
63522 C
1 C
63523 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTTCGTATG
Found at i:63897 original size:897 final size:886
Alignment explanation
Indices: 60826--68989 Score: 6460
Period size: 897 Copynumber: 9.1 Consensus size: 886
60816 CCGGTTCGAT
* * ** * * * *
60826 CTTACACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCACC
* * * * * * * **
60891 AGGCCAGAGGGCCATGATGCACAAGTCGGGGATCAGTCCGGT-CCACCCTGCGTGCTATCGATCC
65 AGGCCAG-GGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCCTGCGTGCTGCCGATCC
* * * * * * **
60955 TGCTACCGCAACCCTCAGTCCGG-TCTGATCTTAGATTGGGAATGAACTTTGTATGCCTAAGCCA
129 TACTACCGTAACCCTCGGTCTGGTTC-GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * * *
61019 ACTGATGAAACGAGCGGGTGAGCGGGCTCTACGTCGACCAA-AGTGGCAGGATGCGCAAGCCGTG
193 ACCGATGAAACGAGCGGGCGGGCAGGCACTAC-CCG-GCAAGAGAGGCGGGATGCGCAAGCCGTG
* *
61083 AATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGTCAATGCCATTTTT
256 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
* *
61148 ATGGCTTGTAAATTCATACAATGGTCCCTTAATCCTTCATGCGAAGTTTCATGGCAAGACGACTC
321 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* * * * * *
61213 GTTTGCTATTTTTCACGA-TTTTCAAAATTTTTATGGTTCGAGATTTTTTCAAACTTTTTTCAGA
386 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-AAAATTTTTTCAGA
* ** * * *
61277 AGGATTTTTGGCCCTGCA-TTCGGTAGACATGATTCTTGTATGTTTTTTGACATGCACAAAAAAA
450 AGGAGTTTTGGCCCCACACTT-GGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
*
61341 TTCAGCTAAAAACTC-ATAGTGTACAGGATTTTGTGACCATTTTAAAAAAGTGTCCCCATTTCAG
514 TTCAGCTAAAAACTCGA-AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
61405 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATT
578 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
61470 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
643 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCA
* * * * *
61535 CGTGCGCACA-CCCCCTAATCG-CTGGAACCCCAATGCTGCCGGTCAGGTTTTCCGGCGATGCTC
708 TGTGCGCACACCCCCCCAATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTC
* * * * ** * *
61598 AGGCGATGGTGCCCCAAGTGAAAAAAAATGTGCCACCAGCACATGCTCGAGCCCAGCATGTGCAC
772 CGACGATGGTGCCTCGAGCAAAAAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCAC
* * * * * *
61663 CCGCAACCCTTGGTC-CAGTCTGATCTTACACTGGGAATGAACTCCATATG
837 CCACAACCCTCGGTCTGA-TCCGATCTTACACTGGGAATGAACTTCGTATG
* *
61713 CTTAGACTGGGAATTAA--C---T-CC---GTCAACCCATGAAACGAGCGTGCGGGCACTCAGCC
1 CTTAGACTGGGAATGAACTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCA-CC
* * * * * * *
61769 A-GCCAGAGGGGCAGAATGCGCAAGCCAGGGATC-GACTGGGTCACCCCCTGCCTGCTACCAATC
65 AGGCCAG-GGGGCAGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCCCTGCGTGCTGCCGATC
* * * * * * * * *
61832 CTACCACTGTAACCCTTGATCTGGTACAATCTTAGATTAGGAATTAACTCCGTATGGCTAAGCCA
128 CTACTACCGTAACCCTCGGTCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
61897 ACCGACGAAATGAACGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGAGATGCGCAAGCCGTGG
193 ACCGATGAAACGAGCGGGCGGGCAGGCACTAC-CCGGCAAGAGAGGCGGGATGCGCAAGCCGTGG
*
61962 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAAGCCAATGCCATTTTTA
257 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTA
* * *
62027 TGGCTTATAAATTCATACAATGGTCCCTAAAGCCTTCATGTGAAGTTTCACGGCAAGACGACTCG
322 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
* **
62092 TTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCCTGATTTTTTTAAAATTTTTTCAGAA
387 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCAGAA
* * * * *
62157 GGACTTTTCGG-CCCACACTTGGTAGACAAGATCTTTATATTTTTTTTGGCATGCATAAAAAAAT
451 GGAGTTTT-GGCCCCACACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
* * *
62221 TCAGCTAAAAAGTTGAAGTGTACAGGATTTTGTGACGATTTGAAAAAAGTGTCCCCATTTCAGAC
515 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
62286 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCT
580 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
62351 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCACACATCATG
645 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATG
* * *
62416 TGCGCACACCCCCCGCCCCTAATCGTCGGAACCCCAATGTCGTGGGTCAGGTTCTCCAGCGATGC
710 TGCGCACA---CCC-CCCC-AATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGC
* * *
62481 TCCGACGATGGTGCCCCGGGCGAAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTG
770 TCCGACGATGGTGCCTCGAGC-AAAAAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTG
*
62546 CACCCACAACCCTCGGTCTGATCCGATCTTACACTAGGAATGAACTTCGTATG
834 CACCCACAACCCTCGGTCTGATCCGATCTTACACTGGGAATGAACTTCGTATG
**
62599 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCA-C
* * *
62664 C-GGCCAGTGGGGTAGGATGCGCAAGCCGAGGATCGG-CTAGGTCCCCCCCTGCGTGCTGCC-AG
64 CAGGCCAG-GGGGCAGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCCCTGCGTGCTGCCGA-
* * * * * * *
62726 TCCTGCTGCCATAACCCTTGATCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
126 TCCTACTACCGTAACCCTCGGTCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
* * * * * *
62791 CAACCGATGAAATGTGCGGGCGGGCAGGCACTACCCCGGCCAGAGAGACGGGATGGGTAAGCCGT
191 CAACCGATGAAACGAGCGGGCGGGCAGGCACTA-CCCGGCAAGAGAGGCGGGATGCGCAAGCCGT
* *
62856 GGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTT
255 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTT
* * *
62921 TATGGCTTGTAAATTCATACAATGGTCCCTTAGGCATTCATGTGAAGTTTCATGGCAAGGCGACT
320 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* *
62986 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGGGATTTTTCTAAAATTTTTTCAG
385 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT-TAAAATTTTTTCAG
* * *
63051 AAGGAGTTTTAGCCCCACACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
449 AAGGAGTTTTGGCCCCACACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
63116 GTT-AGCCT-AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
514 -TTCAG-CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * ** *
63179 GACACTTTAATGGCTACTGGCAGCAAGCCTATAAAATCTCAAATGCTCTTTAAGGGATTTTGAGT
577 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
63244 TCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATC
642 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATC
* ** *
63309 ATGTGTGCACACCCCCCCGGCCCCCAATCGTCGGAACCCCAATGCCGTCGACCAGGTTCTCCGGT
707 ATGTGCGCACA-----CC--CCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC
* **
63374 GATGCTCCGACGATGGTGCCTCGACCAAAAAAAAAAT-ACAGCACCAGCACATGCCCGAGCCCAG
765 GATGCTCCGACGATGGTGCCTCGAGC-AAAAAAAAATGTGA-CACCAGCACATGCCCGAGCCCAG
* *
63438 CATGTGCACCCACAACCCTCGATCTGATCTGATCTTACACTGGGAATGAAC-TCGTATG
828 CATGTGCACCCACAACCCTCGGTCTGATCCGATCTTACACTGGGAATGAACTTCGTATG
* * * *
63496 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACACACGAAATGATCGTGCGGGCACTCATC
1 CTTAGACTGGGAATGAAC-TCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCACC
* * * * **
63561 AGGCTAGCGGGGCCGGATGCACAAGTCGGGGATCGGTCGGGTCCCCCCCTGCGTGCTGTTGATCC
65 AGGCCAG-GGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCCTGCGTGCTGCCGATCC
* * *
63626 TACTACCGTAACCCTCGGTCTGGTTGGATCTTAGACTACGAATGAACTTCGTATGCCTAAGCCAA
129 TACTACCGTAACCCTCGGTCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
63691 CCGATGAAACGAGCAGACGGGCAAGCACTACACTGGTAAGAGAGGCGGGATGCGTAAGCCGTGGA
194 CCGATGAAACGAGCGGGCGGGCAGGCACTAC-CCGGCAAGAGAGGCGGGATGCGCAAGCCGTGGA
63756 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
258 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
* *
63821 GGCTTGTAAATTCATACAATGGTGCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGT
323 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* * *
63886 TTTTTATTTTTCACGATTTTCGAAACTTTTTAAGGTTCGGGATATTTTTAAAATTTTTTCAGAAG
388 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAT-TTTTTAAAATTTTTTCAGAAG
* * * *
63951 GCGTTTTGGCCCAACACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTC
452 GAGTTTTGGCCCCACACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
* *
64016 AGCTAAAAACTCGAAGTGTACCGGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
517 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
64081 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCG
582 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
64146 AGTTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTG
647 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTG
* *
64211 CGCACACCCCCCCAATCGTCGGAACCCCAATGCCG-CTGGTCAGGTTCTCCGACGATGCTCCGGC
712 CGCACACCCCCCCAATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGCTCCGAC
* * * * **
64275 AATGGTGCCTTGGGCAAAAAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGGACCCGT
776 GATGGTGCCTCGAGCAAAAAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCAC
* * *
64340 AACCCTCCGTCCGATCCAATCTTACACTGGGAATGAACTTCGTATG
841 AACCCTCGGTCTGATCCGATCTTACACTGGGAATGAACTTCGTATG
* *
64386 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCACCCAGC
1 CTTAGACTGGGAATGAACTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCA-C
* * * * **
64451 CA-GCCATAGGGGCAGGATGCGCAAGCTGGGGATCGATCGGGTTCCCCCCTATGTGCTGCCGATC
64 CAGGCCA-GGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCCTGCGTGCTGCCGATC
* * * *
64515 CTACTACCATAACCCTCGGTCTGGTTCGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCA
128 CTACTACCGTAACCCTCGGTCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* * * * ** * * * *
64580 ACCCATAAAACGAGCGTGCGGGC--GCTC-AGTCGGCCAGAG-GGCCAGGATGCACAAGCCGGGG
193 ACCGATGAAACGAGCGGGCGGGCAGGCACTACCCGGCAAGAGAGG-CGGGATGCGCAAGCCGTGG
* * ****** * * * *** ** * ** *
64641 ATCGGTCGGGTCCCCCCTGCGTGCTA--C-CGATCCTGC-TACCGCAACCCTTAGTCCGGT-CTG
257 ATCGATAGGGTGGTAGGTGGGT-TTAGGCAC-AT-CTTCATATTTC-TGCCAT-G-CCAATGC-C
* * ** * * ** * **
64701 A-TCTTA-GAC-TGGGAATT-A-AC-TTCGTACGCC-TAAGCCAACCGATG-AAACG-AGCA-GG
315 ATTTTTATGGCTTGTAAATTCATACAATGGT-C-CCTTAAGCC-TTC-ATGTGAA-GTTTCATGG
* * **** * ** ** **** ** *
64756 C-GGACGGGCTCTACGCCGGCCAAAGTGGCGA-GA-TGCACAAACCGTGAATCGATAGGGTGGTA
375 CAAGAC--G-ACT-CG-TTTTCTATTTTTC-ACGATTTTTGAAA-C-T---T-TTTACGGT--T-
* * * * ** * * *** * **
64818 GGTGGGTTTGGCACATCTTCATATTTCTGCCATGTCAATGCCATTTTTATGGCTTGTA-AATTCA
425 CG-GGATTT------T-TTAAAATTT-TTTCA-G--AA-G-GA-GTTT-TGGC-CCCACACTTGG
* * * *** ** * * * ** ** ****
64882 TACA-ATGGTCCCTT-AAGCCTTCATGCGAAGTTTCATGGCAAGACGACTTGTTTGCT-ATTTTT
473 TAGACATGAT-CCTTGTATTTTTTTTG-GCA--TGCA---CAA-A-AAAAT-TCAGCTAAAAACT
* * * ** *** * * *** * *** * *
64944 C-ATGATTTTCAAAATTTT-T-ATGGTTCG-AGATTTTCTCAAAATTTTTTCAGAAGGAGTTT--
528 CGAAG-TGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCA---TTTCAG-A-CACTTTAA
* * * *** * * * * * *****
65003 TGGCCTTGCATTTGGTAGACATGATCCTTGTATGTTTTTTGACATG--CATAAAAAAATTCAGCT
587 TGG-C-T--A-CTGGCAG-CA--AACC-TGTA--AAATCTCAAATGCTCTTTAAGGGGGT--G-T
* *** * * * * ** * * * * * * *
65066 AAAAACTCAAAGTGT-A-CA-GGATTTTGTGACCATTTGAAAAAAGTGTCC--CCATTTCAGACA
638 GAGTTCTCGAGGTTTGATGAGGGA-TAGGGGGCCA----ATATAAG-GGCCAAGCA--CCAG-CA
** * * * ****** * * ** * **
65126 CTTTAATGGC-TA-C-TG-GCAGCAAACTTGTAAAAT-ATC-AAATGCTCTTTAAGGGGGT--GT
694 C--CCATCGCACATCATGTGC-GCACACCCCCCCAATCGTCGGAA--C-C-CCAATGCCGTCGGT
* * * * * * * ** **** *
65183 GA-ATTCT-CGAG-GTTTGAT--GAGGGATAGGGGGC-C-AATATAAGGGCCAA-GTACCAGCAC
752 CAGGTTCTCCG-GCG-ATGCTCCGA-CGAT-GGTGCCTCGAGCA-AA-AAAAAATGT--GA-CA-
* * * * * **
65240 CCATCGCACAT-CACGTGCGCACACCCCCTAATCGCTGGAACCC-CAATGCCGTCGGTCAGGTTC
807 CCA--GCACATGCCCGAGC-C-CA---GC--AT-G-T-GCACCCACAA--CCCTCGGTC---TGA
* * ******
65303 TCCGGCGATGCTCAGGCGA-TGGTGCCCTAGGTGAAAAAAAAATG
855 T-C--CGAT-CTTA--C-ACTGG-G----A-ATGAACTTCGTATG
*** ** * * * ** * * *
65347 -TGCCACCAGCACATG--CTCG-A-GCCCAGCATGTGC-A-CC-CGTAACCCTTG-GTCCAGTCT
1 CTTAGACTGGGA-ATGAACTCGTATGCCTA--A-GT-CAACCCACG-AA-ACGAGCGTGCGGGC-
* * * ** ** ** ** * * * * * * *
65403 GATCTTACACTGG-AAATGAACACCATATGCTTAGACTGGGAAT-GAACTC-CGTCAACCCAC-G
58 -A-CTCAC-CAGGCCAGGGGGCAGGATGCGC-AAG-CCGGGGATCG--GTCGGGTC-CCCCCCTG
* * * * * *** * * * * * * * *
65464 AAACGAGCGTGCAG-GCGCT-CAACC--AGCCAGAGGGGCAGAATGCGCAAGCCGGGGATCGGCT
115 ---CGTGC-TGCCGATC-CTACTACCGTAACC-CTCGGTCTG-GTTCG--A-TC----TTAGACT
* * * * ** * * * ** * *** * * * **
65525 -GG-GTCACCCCCTGCCTGCTACCAATCCTACC-ACCATAAC--CCTATC-GGTA-TC-TTAGAT
166 AGGAATGAACTCC-GTATGC--CTAAGCCAACCGATGA-AACGAGCGGGCGGGCAGGCACTA-CC
* * ** * * *** * * ** *** * *
65582 TGGGAATGA-ACTCCGTATGC-CTAAGCCAACCGA-CGAAATGACGG--GG-GGCACTACGC-CG
226 CGGCAA-GAGAGGCGGGATGCGC-AAGCC-GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *** * * * ** * * *
65640 GC--CAGAGAGGCGGATGCGCAAGCC-GTGGATCGATAGGGTGGTAGGTGGTTTAGGCACATCTT
288 TCTTCATA-TTTC---TGC-CATGCCAAT-G--CCAT----TTTTA--TGGCTT--GTA-A-ATT
*** * * * ** * * * * * *
65702 CATATTTTTG-CCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT-ACAATGGTCCCTTAAGC
335 CATACAATGGTCCCT--TAA-GCC-TTCATGTGA--AGT---TTCATGGCAA--G------ACGA
* *
65765 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTCAAAACTTTTT
383 C-TC--GT----TTTC-T---------A-T--TTTT--------CACGATTTTT-GAAACTTTTT
65830 ACGGTTC--GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG-CCC-CACTTGGTAGACATGATC
419 ACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCACACTTGGTAGACATGATC
65891 CTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
484 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
65955 ACCATTTGAAAAAAGTGTCCCCATTT-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
549 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
66019 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
614 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
66084 GGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGCCCCCCAATCGTC-GAACC
679 GGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACA-----C-CCCCCCAATCGTCGGAACC
* *
66148 CCAATGCCGTCGGTCAGGTTCTCC-GCGATGCTCCGACGATGGTGCC-CGGGCGAAAAAAAATG-
738 CCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCTCGAGCAAAAAAAAATGT
* *
66210 GGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTG-TCCGATCTTACAC
803 GACACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCTGATCCGATCTTACAC
*
66274 TAGGAATGAAC-TCGTATG
868 TGGGAATGAACTTCGTATG
** *
66292 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCA-C
* * *
66357 C-GGCCAGAGGGGTAGGATGCACAAGCC-GGGATC-GCCGGGT-CCCCCCT--GTGCTGCCGATC
64 CAGGCCAG-GGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCCTGCGTGCTGCCGATC
* * * * *
66416 CTGCTGCCATAACCCT--GTC-GG-TCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
128 CTACTACCGTAACCCTCGGTCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* *
66477 ACCGACGAAACGAGCGGGCGGGC-GGCACTACCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
193 ACCGATGAAACGAGCGGGCGGGCAGGCACTACCCGGCAAGAGAGGCGGGATGCGCAAGCCGTGGA
66541 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TGCCATGCCAATGCCATTTTTAT
258 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
66605 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
323 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
66670 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAA--
388 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGG
*
66733 AGTTTTGGCCCCA-ACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCA
453 AGTTTTGGCCCCACACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
66796 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
518 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
66861 TTAATGGCTACTGGCAG----CCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGA
583 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
66921 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA-C-----C
648 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGC
* * *
66980 -CCCCCCGCCCCCAATCGTCGGAACCCCAATG-CGTC-GTCAGGTTCT-CGG-TATGCTCCG--G
713 GCACACC-CCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACG
67038 ATGGTGCC-CG-GCGAAAAAAAAATG-G-CACCAGCACATG-CCGAGCCCAGCATGTGCA-CC-C
777 ATGGTGCCTCGAGC-AAAAAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCAC
67096 AACCCTC-GTCTGATCCGATCTTACAC--GGAATGAAC-TCGTATG
841 AACCCTCGGTCTGATCCGATCTTACACTGGGAATGAACTTCGTATG
*
67138 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCACC
1 CTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCACC
* *
67203 -GGCCA----G--GG--G-GCAAGCC-GGGATC-GTCGGGT-CCCCCCTGCATGCTGTCGATCCT
65 AGGCCAGGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCCTGCGTGCTGCCGATCCT
*
67255 ACTACC--AACCCTCGGTC-GGTT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
130 ACTACCGTAACCCTCGGTCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAC
*
67316 CGATGAAACGAGCGGGCGGGC--GCACTA--CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
195 CGATGAAACGAGCGGGCGGGCAGGCACTACCCGGCAAGAGAGGCGGGATGCGCAAGCCGTGGATC
67377 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGG
260 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGG
67442 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
325 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
*
67507 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGA
390 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCAGAAGGA
* *
67572 GTTTTGGCCCCAAACTTGGTAG--ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
454 GTTTTGGCCCCACACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
67635 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
519 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
67700 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
584 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
67765 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
649 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCG
67830 CACACCCCCCCCCCCCAATCGTCGGAACCCCAATG-CGTCGGTCAGGTTCT-C--CGA---T---
714 CACA-----CCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCG
* * *
67885 --GATGGTGCC-CGGGCGAAAAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCC
774 ACGATGGTGCCTCGAGCAAAAAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCACCC
** * *
67947 GTAACCCT-GGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATG
839 ACAACCCTCGGTCTGATCCGATCTTACACTGGGAATGAACTTCGTATG
* *
67994 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCA-C
* * *
68059 C-GGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGGGT-CCCCCCTGTGTGCTGCCGATC
64 CAGGCCAG-GGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCCTGCGTGCTGCCGATC
* * * * *
68122 CTACTACCGCAACCCTCAGTCT-GATCTAATCTTAGACTGGGAATGAACT-CGTATGCCTAAGCC
128 CTACTACCGTAACCCTCGGTCTGGTTC-GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
* * *
68185 AACCGACGAAACGAGC-GGCGGGCAGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTG
192 AACCGATGAAACGAGCGGGCGGGCAGGCACTAC-CCGGCAAGAGAGGCGGGATGCGCAAGCCGTG
68249 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
256 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
68314 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
321 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
68379 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTTAAAATTTTTTCAGA
386 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCAGA
* * *
68443 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
450 AGGAGTTTTGGCCCCACACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
68508 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
515 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
68573 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
580 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
68638 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
645 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATG
*** * * * ** *
68703 TGCGCACACCCCCGCCCCCCAATCCGAACCCCAATGCCGCCGGTCAGGTTCT-CGATGAAGCTCC
710 TGCGCACACCCCC-CCAATC-GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCC
* * * *
68767 AACGATGGTGCCCCGGGCAAAAAAAAATG-CAGCACCAGCACATGCCCGAGCCCAGCATGTGCAC
773 GACGATGGTGCCTCGAGCAAAAAAAAATGTGA-CACCAGCACATGCCCGAGCCCAGCATGTGCAC
* * * * *
68831 CCATAACCCTCGATCCGGTCCGATCTTACACTGGGAATGAACTCCGTATG
837 CCACAACCCTCGGTCTGATCCGATCTTACACTGGGAATGAACTTCGTATG
* * *
68881 CTTAGACTGGGAATGAACTCCGTATGCC-AAGTCAACACACGAAACGAACGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCA-C
*
68945 C-CGCCAGAGGGGCAGGATGCGCAAG-C-GGGATCGG-CGGGTCCCCCC
64 CAGGCCAG-GGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCC
68990 TGTGTCACAC
Statistics
Matches: 5829, Mismatches: 966, Indels: 967
0.75 0.12 0.12
Matches are distributed among these distances:
834 73 0.01
835 160 0.03
836 28 0.00
837 91 0.02
838 124 0.02
839 9 0.00
840 1 0.00
842 26 0.00
843 74 0.01
844 1 0.00
845 6 0.00
846 76 0.01
847 6 0.00
848 42 0.01
849 6 0.00
850 32 0.01
851 33 0.01
852 24 0.00
853 24 0.00
854 38 0.01
855 34 0.01
856 85 0.01
857 18 0.00
861 2 0.00
862 2 0.00
864 2 0.00
866 1 0.00
867 7 0.00
868 79 0.01
869 58 0.01
871 43 0.01
872 152 0.03
873 77 0.01
874 13 0.00
875 64 0.01
876 202 0.03
877 300 0.05
878 253 0.04
879 275 0.05
880 18 0.00
881 1 0.00
882 7 0.00
883 19 0.00
884 26 0.00
885 84 0.01
886 260 0.04
887 95 0.02
888 10 0.00
889 79 0.01
890 248 0.04
891 3 0.00
892 9 0.00
893 6 0.00
894 1 0.00
895 10 0.00
896 614 0.11
897 648 0.11
898 151 0.03
899 6 0.00
900 4 0.00
901 1 0.00
902 7 0.00
903 3 0.00
904 1 0.00
906 3 0.00
907 6 0.00
908 3 0.00
909 11 0.00
910 18 0.00
911 1 0.00
912 8 0.00
913 3 0.00
914 8 0.00
915 14 0.00
916 8 0.00
917 24 0.00
918 6 0.00
919 10 0.00
921 4 0.00
922 5 0.00
923 2 0.00
924 11 0.00
925 13 0.00
926 24 0.00
927 43 0.01
928 15 0.00
929 13 0.00
930 19 0.00
931 24 0.00
932 22 0.00
933 10 0.00
934 9 0.00
935 16 0.00
936 14 0.00
937 2 0.00
938 3 0.00
940 5 0.00
941 1 0.00
942 4 0.00
943 5 0.00
944 6 0.00
945 18 0.00
946 22 0.00
947 9 0.00
948 10 0.00
949 4 0.00
950 5 0.00
951 2 0.00
952 6 0.00
953 3 0.00
954 3 0.00
955 8 0.00
956 6 0.00
957 4 0.00
958 11 0.00
959 9 0.00
960 17 0.00
961 17 0.00
962 18 0.00
963 14 0.00
964 8 0.00
965 12 0.00
966 9 0.00
967 2 0.00
968 10 0.00
969 3 0.00
970 12 0.00
971 19 0.00
972 32 0.01
973 23 0.00
974 15 0.00
975 9 0.00
976 4 0.00
977 14 0.00
978 11 0.00
979 25 0.00
980 24 0.00
981 10 0.00
982 1 0.00
983 3 0.00
984 8 0.00
985 3 0.00
986 1 0.00
987 11 0.00
988 6 0.00
989 10 0.00
990 17 0.00
991 4 0.00
992 7 0.00
993 9 0.00
995 3 0.00
996 1 0.00
997 2 0.00
998 14 0.00
999 7 0.00
1000 5 0.00
1001 4 0.00
1002 2 0.00
1003 1 0.00
1004 3 0.00
1006 1 0.00
1007 3 0.00
1008 7 0.00
1009 1 0.00
1014 1 0.00
1015 4 0.00
1017 1 0.00
1019 1 0.00
1021 5 0.00
1022 1 0.00
1024 1 0.00
1025 3 0.00
1026 2 0.00
1027 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (886 bp):
CTTAGACTGGGAATGAACTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCACCA
GGCCAGGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCCTGCGTGCTGCCGATCCTA
CTACCGTAACCCTCGGTCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACC
GATGAAACGAGCGGGCGGGCAGGCACTACCCGGCAAGAGAGGCGGGATGCGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGT
TTTGGCCCCACACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGG
TGCCTCGAGCAAAAAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCC
TCGGTCTGATCCGATCTTACACTGGGAATGAACTTCGTATG
Found at i:64396 original size:26 final size:26
Alignment explanation
Indices: 64360--64412 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
64350 CCGATCCAAT
64360 CTTACACTGGGAATGAACT-TCGTATG
1 CTTACACTGGGAATGAACTCT-GTATG
*
64386 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
64412 C
1 C
64413 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTGTATG
Found at i:64641 original size:159 final size:158
Alignment explanation
Indices: 64386--64752 Score: 457
Period size: 159 Copynumber: 2.3 Consensus size: 158
64376 ACTTCGTATG
* * *
64386 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCACCCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACCCAGC
* * * * * *
64451 CAGCCATAGGGGCAGGATGCGCAAGCTGGGGATCGATCGGGTTCCCCCCTATGTGCTGCCGATCC
66 CAGCCAGAGGGCCAGGATGCACAAGCCGGGGATCGATCGGG-TCCCCCCTACGTGCTACCGATCC
* * *
64516 TACTACCATAACCCTCGGTCTGGT-TCGAT
130 TACTACCACAACCCTCAGTCCGGTCT-GAT
* * * * *
64545 CTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACCCAGC
* * *
64610 CGGCCAGAGGGCCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCTGCGTGCTACCGATCCT
66 CAGCCAGAGGGCCAGGATGCACAAGCCGGGGATCGATCGGGTCCCCCCTACGTGCTACCGATCCT
* * *
64675 GCTACCGCAACCCTTAGTCCGGTCTGAT
131 ACTACCACAACCCTCAGTCCGGTCTGAT
* * * * *
64703 CTTAGACTGGGAATTAACTTCGTACGCCTAAGCCAACCGATGAAACGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
64753 AGGCGGACGG
Statistics
Matches: 177, Mismatches: 30, Indels: 3
0.84 0.14 0.01
Matches are distributed among these distances:
158 84 0.47
159 93 0.53
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACCCAGC
CAGCCAGAGGGCCAGGATGCACAAGCCGGGGATCGATCGGGTCCCCCCTACGTGCTACCGATCCT
ACTACCACAACCCTCAGTCCGGTCTGAT
Found at i:66304 original size:25 final size:26
Alignment explanation
Indices: 66267--66318 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
66257 TCTGTCCGAT
66267 CTTACACTAGGAATGAACTC-GTATG
1 CTTACACTAGGAATGAACTCTGTATG
* *
66292 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTAGGAATGAACTCTGTATG
66318 C
1 C
66319 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCTGTATG
Found at i:67997 original size:26 final size:26
Alignment explanation
Indices: 67968--68020 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
67958 CTGGTCCGAT
67968 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
67994 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
68020 C
1 C
68021 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:68672 original size:877 final size:875
Alignment explanation
Indices: 64545--68991 Score: 6611
Period size: 872 Copynumber: 5.1 Consensus size: 875
64535 CTGGTTCGAT
* ** *
64545 CTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
64610 CGGCCAGAGGGCCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCTGCGTGCTACCGATCCT
66 CGGCCAGAGGGGCAGGATGCACAAGCC-GGGATC-GTCGGGTCCCCCCTGCGTGCTGCCGATCCT
* * * * * *
64675 GCTACCGCAACCCTTAGTCCGGTCTGATCTTAGACTGGGAATTAACTTCGTACGCCTAAGCCAAC
129 ACTACCACAACCC-TAGT-CGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * * * *
64740 CGATGAAACGAGCAGGCGGACGGGCTCTACGCCGGCCAAAGTGGCGAGATGCACAAACCGTGAAT
192 CGACGAAACGAGCGGGCGGGC-GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
*
64805 CGATAGGGTGGTAGGTGGGTTT-GGCACATCTTCATATTTCTGCCATGTCAATGCCATTTTTATG
256 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
* *
64869 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGCGAAGTTTCATGGCAAGACGACTTGTT
321 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * * * *
64934 TGCTATTTTTCATGA-TTTTCAAAATTTTTATGGTTCGAGATTTTCTCAAAATTTTTTCAGAAGG
386 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCG-GATTTTTTTAAAATTTTTTCAGAAGG
* * * *
64998 AGTTTTGGCCTTGC-ATTTGGTAGACATGATCCTTGTATGTTTTTTGACATGCATAAAAAAATTC
450 AGTTTTGGCC--CCAACTTGGTAGACATGATCCTTGTAT-TTTTTTGGCATGCACAAAAAAATTC
*
65062 AGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
512 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
65127 TTTAATGGCTACTGGCAGCAAACTTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGAATTCTCG
577 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
65192 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCACGTG
642 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
*
65257 CGCACA------CCCCCTAATCG-CTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCT
707 CGCACACCCCCCCCCCCCAATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCT-C-GCGA--CT
* * * *
65315 CAGGCGATGGTGCCCTAGGTGAAAAAAAAATGTGCCACCAGCACATGCTCGAGCCCAGCATGTGC
767 ----CGATGGTGCCC-GGGCG-AAAAAAAATG-GACACCAGCACATGCCCGAGCCCAGCATGTGC
** * * * *
65380 ACCCGTAACCCTTGGTCCAGTCTGATCTTACACTGGAAATGAACACCATATG
825 ACCCGTAACCC-TGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATG
* *
65432 CTTAGACTGGGAATGAA---C---T-CC---GTCAACCCACGAAACGAGCGTGCAGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
65487 CAGCCAGAGGGGCAGAATGCGCAAGCCGGGGATCGGCTGGGTCACCCCCTGCCTGCTACCAATCC
66 CGGCCAGAGGGGCAGGATGCACAAGCC-GGGATCGTC-GGGTC-CCCCCTGCGTGCTGCCGATCC
* * *
65552 TACCACCATAACCCTA-TCGG--T-ATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACC
128 TACTACCACAACCCTAGTCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
*
65613 GACGAAATGA-C--G-GGG-GGCACTACGCCGGCCAGAGAGGC-GGATGCGCAAGCCGTGGATCG
193 GACGAAACGAGCGGGCGGGCGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCG
*
65672 ATAGGGTGGTAGGT-GGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGC
258 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGC
65736 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
323 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
* *
65801 CTATTTTTCACAATTTTTCAAAACTTTTTACGGTTC-GA-TTTTTTAAAATTTTTTCAGAAGGAG
388 CTATTTTTCACGATTTTT-GAAACTTTTTACGGTTCGGATTTTTTTAAAATTTTTTCAGAAGGAG
65864 TTTTGGCCCC-ACTTGGTAGACATGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTA
452 TTTTGGCCCCAACTTGGTAGACATGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTA
65928 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT-AGACACTTTAA
517 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
65992 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
582 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
*
66057 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC
647 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
66122 ACCCCCCGCCCCCCAATCGTC-GAACCCCAATGCCGTCGGTCAGGTTCTCCGCGATGCTCCGACG
712 ACCCCCC-CCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-CGCGA--CT----CG
* *
66186 ATGGTGCCCGGGCGAAAAAAAATGGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAAC
769 ATGGTGCCCGGGCGAAAAAAAATGGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAAC
*
66251 CCTCGGTCT-GTCCGATCTTACACTAGGAATGAACT-CGTATG
834 CCT-GGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATG
* * *
66292 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
66357 CGGCCAGAGGGGTAGGATGCACAAGCCGGGATCGCCGGGTCCCCCCT--GTGCTGCCGATCCTGC
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGATCGTCGGGTCCCCCCTGCGTGCTGCCGATCCTAC
* *
66420 TGCCATAACCCT-GTCGGTC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
131 TACCACAACCCTAGTCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
66483 GAAACGAGCGGGCGGGCGGCACTAC-CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
196 GAAACGAGCGGGCGGGCGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
66547 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TGCCATGCCAATGCCATTTTTATGGCTTG
261 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTG
66611 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
326 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
66676 TTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCAGAA--AGTTT
391 TTTTTCACGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTTAAAATTTTTTCAGAAGGAGTTT
*
66738 TGGCCCCAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
455 TGGCCCCAACTTGGTAGACATGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
66803 ACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
520 ACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
66868 CTACTGGCAG----CCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGA
585 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
66928 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG--CA-CA------C-C-CC
650 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
*
66982 CCCCGCCCCCAATCGTCGGAACCCCAATG-CGTC-GTCAGGTTCTCG-GTATGCTCCGGATGGTG
715 CCCCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCGCG-A--CT-C-GATGGTG
*
67044 CCC-GGCGAAAAAAAAATGG-CACCAGCACATG-CCGAGCCCAGCATGTGCACCC--AACCCTCG
775 CCCGGGCG-AAAAAAAATGGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTGG
*
67104 TCTGATCCGATCTTACAC--GGAATGAACT-CGTATG
839 TCTGGTCCGATCTTACACTGGGAATGAACTCCGTATG
67138 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-C
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
67202 CGGCC--A--GG--GG--G--CAAGCCGGGATCGTCGGGTCCCCCCTGCATGCTGTCGATCCTAC
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGATCGTCGGGTCCCCCCTGCGTGCTGCCGATCCTAC
* *
67257 TA-C-CAACCCTCGGTCGGT-TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
131 TACCACAACCCT-AGTCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
*
67319 TGAAACGAGCGGGCGGGC-GCACTA---CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
195 CGAAACGAGCGGGCGGGCGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
67380 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
260 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
67445 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
325 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
67510 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTT
390 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCG-GATTTTTTTAAAATTTTTTCAGAAGGAGTT
67575 TTGGCCCCAAACTTGGTAG--ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
454 TTGGCCCC-AACTTGGTAGACATGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTA
67638 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
517 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
67703 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
582 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
67768 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
647 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
67833 ACCCCCCCCCCCCAATCGTCGGAACCCCAATG-CGTCGGTCAGGTTCTC-CGA-T-GATGGTGCC
712 ACCCCCCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCGCGACTCGATGGTGCC
67894 CGGGCGAAAAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTGGTC
777 CGGGCGAAAAAAAATG-GACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTGGTC
67959 TGGTCCGATCTTACACTGGGAATGAACTCCGTATG
841 TGGTCCGATCTTACACTGGGAATGAACTCCGTATG
*
67994 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*
68059 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGGGTCCCCCCTGTGTGCTGCCGATCCT
66 CGGCCAGAGGGGCAGGATGCACAAGCC-GGGATCG-TCGGGTCCCCCCTGCGTGCTGCCGATCCT
* *
68124 ACTACCGCAACCCTCAGTCTGATCTAATCTTAGACTGGGAATGAACT-CGTATGCCTAAGCCAAC
129 ACTACCACAACCCT-AGTC-GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
*
68188 CGACGAAACGAGC-GGCGGGCAGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
192 CGACGAAACGAGCGGGCGGGC-GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
68252 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
256 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
68317 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
321 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
68382 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGATTTTTTTAAAATTTTTTCAGAAGGA
386 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGATTTTTTTAAAATTTTTTCAGAAGGA
*
68447 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
451 GTTTTGGCCCC-AACTTGGTAGACATGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAG
68512 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
514 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
68577 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
579 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
68642 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
644 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * *
68707 CACACCCCCGCCCCCCAATC--C-GAACCCCAATGCCGCCGGTCAGGTTCTCGATGAAGCTCCAA
709 CACACCCCCCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCG-CG-A-CT----
* * *
68769 CGATGGTGCCCCGGGCAAAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCA
767 CGATGGTG-CCCGGGCGAAAAAAAATGGA-CACCAGCACATGCCCGAGCCCAGCATGTGCACCCG
* *
68834 TAACCCTCGATCCGGTCCGATCTTACACTGGGAATGAACTCCGTATG
830 TAACCCT-GGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATG
* *
68881 CTTAGACTGGGAATGAACTCCGTATGCC-AAGTCAACACACGAAACGAACGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
68945 CCGCCAGAGGGGCAGGATGCGCAAG-CGGGATCGGCGGGTCCCCCCTG
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGATCGTCGGGTCCCCCCTG
68992 TGTCACACCC
Statistics
Matches: 3308, Mismatches: 131, Indels: 246
0.90 0.04 0.07
Matches are distributed among these distances:
834 74 0.02
835 159 0.05
836 28 0.01
837 96 0.03
838 116 0.04
839 12 0.00
841 2 0.00
842 26 0.01
843 71 0.02
845 7 0.00
846 79 0.02
847 4 0.00
848 39 0.01
849 5 0.00
850 33 0.01
851 39 0.01
852 22 0.01
853 26 0.01
854 42 0.01
855 32 0.01
856 84 0.03
857 23 0.01
858 1 0.00
859 2 0.00
860 159 0.05
861 105 0.03
862 68 0.02
863 12 0.00
864 39 0.01
865 198 0.06
866 56 0.02
867 86 0.03
868 85 0.03
869 65 0.02
870 55 0.02
871 64 0.02
872 332 0.10
873 99 0.03
874 11 0.00
875 68 0.02
876 204 0.06
877 321 0.10
878 30 0.01
880 3 0.00
881 1 0.00
883 13 0.00
884 8 0.00
885 9 0.00
886 114 0.03
887 81 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (875 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCAGGATGCACAAGCCGGGATCGTCGGGTCCCCCCTGCGTGCTGCCGATCCTAC
TACCACAACCCTAGTCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
GAAACGAGCGGGCGGGCGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCACGATTTTTGAAACTTTTTACGGTTCGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTT
GGCCCCAACTTGGTAGACATGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
CCCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCGCGACTCGATGGTGCCCGGG
CGAAAAAAAATGGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTGGTCTGGTC
CGATCTTACACTGGGAATGAACTCCGTATG
Found at i:68884 original size:26 final size:26
Alignment explanation
Indices: 68855--68907 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
68845 CCGGTCCGAT
68855 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
68881 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
68907 C
1 C
68908 CAAGTCAACA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:78182 original size:804 final size:803
Alignment explanation
Indices: 76624--78185 Score: 2459
Period size: 804 Copynumber: 1.9 Consensus size: 803
76614 GCACTACGCT
*
76624 GCCAGAAAGACGGGATGCACAAGCCGTGGATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAAAGACGGGATGCACAAGCCATGGATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTC
76689 ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
66 ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* *
76754 CATGTGAAGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCATGATTTTTGAAACTTTTGACGG
131 CATGTGAAGTTTCACGGCAACACGACTCGTTCTCTATTTTTCATGATTTTTGAAACTTTTGACGG
* *
76819 TTCGGGATTTTTTAAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAAGTTGGTAGACATGATCTTG
196 TTCGGAATTTTTTAAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCTTG
* * *
76884 TATTTTTGTTGGCTTGCACAAAAAAATTATGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCA
261 TATTTTTGATGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCA
76949 TTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
326 TTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
*
77014 AATGCTCTTTAAACGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCC
391 AATGCTCTTTAAACGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGAGGGCCAATATAAGGGCC
* * * * *
77079 ATGTACCAACACCCATGATAGATCATTTGTGCACACCCCCCCCGCCCCCCAATCGTCGGAACCCT
456 AAGTACCAACACCCATGACACATCATGTGTGCACA-CCCCCCCGCCCCCCAATCGTCGGAACCCC
** *
77144 AATGCCGTCGATCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGAGCGAAAAAAAATACAA
520 AATGCCACCGATCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAGCGAAAAAAAATACAA
* * *
77209 CACGAGCACATGCCCGAGCCCGACATGTGCACCCGTAACCCTCGGTCCGGTCCGATCTTACATTT
585 CACCAGCACATGCCCGAGCCCGACATGTGCACCCGTAACCCTCGGTCCGGTCCGATCTTACACTG
* * * *
77274 GGAATGAACTCCGTTTGCTTAGACTGGGAATGAACTCCATATGCGTAAGACAACCCACGAAACGA
650 GGAATGAACTCCGTGTGCTTAGACTAGGAATGAACTCCATATGCCTAAGACAACCCACGAAACAA
* *
77339 GTGTGCGGGTGCTCAGCCAGCCAGAGGGGTAGGATGCACAAGCCGAAAATCAATCGGGTCCCCCC
715 GTGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGATGCACAAGCCGAAAATCAATCGGGTCCCCCC
77404 TGCGTGTTATCGATCCTGCCACCG
780 TGCGTGTTATCGATCCTGCCACCG
* * * *
77428 GCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAAAGACGGGATGCACAAGCCATGGATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
77493 ATATTTCTGCCATGCCATTGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
66 ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * *
77558 CATGTGAAGTTTCACGGCAACACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGG
131 CATGTGAAGTTTCACGGCAACACGACTCGTTCTCTATTTTTCATGATTTTTGAAACTTTTGACGG
* *
77623 TTCGGAATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
196 TTCGGAATTTTTTAAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGAT-CTT
*
77688 GTATTTTTGATGGCATGCATAAAAAAATTAAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACC
260 GTATTTTTGATGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACC
* *
77753 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTC
325 ATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
** *
77818 AAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGC
390 AAATGCTCTTTAAACGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGAGGGCCAATATAAGGGC
* * *
77883 TAAGTACTAGCACCCATCG-CACATCATGTGTGCACA-CCCCCCGCTCCCCCAATCG-CTGGAAC
455 CAAGTACCAACACCCAT-GACACATCATGTGTGCACACCCCCCCGC-CCCCCAATCGTC-GGAAC
* * * * ** * * * *
77945 CCCAATGGCACCGGTCAGGTTTTTCGGTGATGGT-CGGACGATGGTGCCCTGGGCGAAAAACAAT
517 CCCAATGCCACCGATCAGGTTCTCCGACGATGCTCCGG-CGATGGTGCCCCGAGCGAAAAAAAAT
* * * *
78009 GCGACACCAGCACATTCCCGAGCCC-AGCATGTGCACCCGTAACCCTCGGTCTGGTCCGATCTTA
581 ACAACACCAGCACATGCCCGAGCCCGA-CATGTGCACCCGTAACCCTCGGTCCGGTCCGATCTTA
* *
78073 CACTGGGAATGAACTCCGTGTGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
645 CACTGGGAATGAACTCCGTGTGCTTAGACTAGGAATGAACTCCATATGCCTAAGACAACCCACGA
*
78138 AACAAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGC
710 AACAAGTGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGATGCACAAGC
78186 TGGGGATTGA
Statistics
Matches: 689, Mismatches: 63, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
803 13 0.02
804 460 0.67
805 215 0.31
806 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (803 bp):
GCCAGAAAGACGGGATGCACAAGCCATGGATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CATGTGAAGTTTCACGGCAACACGACTCGTTCTCTATTTTTCATGATTTTTGAAACTTTTGACGG
TTCGGAATTTTTTAAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCTTG
TATTTTTGATGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCA
TTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
AATGCTCTTTAAACGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGAGGGCCAATATAAGGGCC
AAGTACCAACACCCATGACACATCATGTGTGCACACCCCCCCGCCCCCCAATCGTCGGAACCCCA
ATGCCACCGATCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAGCGAAAAAAAATACAAC
ACCAGCACATGCCCGAGCCCGACATGTGCACCCGTAACCCTCGGTCCGGTCCGATCTTACACTGG
GAATGAACTCCGTGTGCTTAGACTAGGAATGAACTCCATATGCCTAAGACAACCCACGAAACAAG
TGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGATGCACAAGCCGAAAATCAATCGGGTCCCCCCT
GCGTGTTATCGATCCTGCCACCG
Found at i:79016 original size:26 final size:26
Alignment explanation
Indices: 78965--79017 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
78955 CTGGTCTGAT
**
78965 CTTACACTGGGAATGAACTCGGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
78991 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
79017 C
1 C
79018 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:81642 original size:25 final size:24
Alignment explanation
Indices: 81614--81664 Score: 84
Period size: 25 Copynumber: 2.1 Consensus size: 24
81604 TCCGGTCGAT
81614 CTTACACTGGAATGAACTCCGTATG
1 CTTACACTGGAATGAACTCC-TATG
*
81639 CTTAGACTGGAATGAACTCCTATG
1 CTTACACTGGAATGAACTCCTATG
81663 CT
1 CT
81665 AAGTCAACCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (24 bp):
CTTACACTGGAATGAACTCCTATG
Found at i:83392 original size:26 final size:26
Alignment explanation
Indices: 83356--83425 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
83346 TCTTGCACTA
83356 GGAATGAACTCCATATGCTTAGACTG
1 GGAATGAACTCCATATGCTTAGACTG
83382 GGAATGAACTCCATATGCTTAGACTG
1 GGAATGAACTCCATATGCTTAGACTG
*
83408 GGAATGAACTCCGTATGC
1 GGAATGAACTCCATATGC
83426 CTAATCAACC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
GGAATGAACTCCATATGCTTAGACTG
Found at i:84624 original size:897 final size:897
Alignment explanation
Indices: 77425--87907 Score: 13193
Period size: 897 Copynumber: 11.8 Consensus size: 897
77415 GATCCTGCCA
*
77425 CCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
1 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
77490 TTCATATTTCTGCCATGCCATTGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGC
66 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
77555 CTTCATGTGAAGTTTCACGGCAACACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
131 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * *
77620 TGGTTCGGAATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
196 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
77685 CTTGTATTTTTGATGGCATGCATAAAAAAATTAAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
261 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
*
77750 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAAT
326 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
77815 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGGGCCAATATAAG
391 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * * *
77880 GGCTAAGTACTAGCACCCATCGCACATCATGTGTG--CACA-CCCCCCGCTCCCCCAATCGCTGG
456 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCCGCCCCCCCAATCGCCGG
* * * * * * *
77942 AACCCCAATGGCACCGGTCAGGTTTTTCGGTGATGGTCGGACGATGGTGCCCTGGGCGAAAAACA
521 AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCTGGGAGAAAAA-A
* * * *
78007 ATGCGACACCAGCACATTCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCTGGTCCGATCTT
585 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTC-GGTCTGATCTT
* *
78072 ACACTGGGAATGAACTCCGTGTGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACG
649 ACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * *
78137 AAACAAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCTGGGGATTGATCGGGT
714 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGT
*** * *
78202 CCCCCCCTGCGTGCTACCGATCAAACTACCACAACCCTCGATTC-GGTCTGATCTTAGACTTGGA
779 -CCCCCCTGCGTGCTACCGATCCTGCTACCACAACCCTC-AGTCTGGTCTGATCTTAGACTGGGA
78266 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
842 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
* *
78322 TCGGCCAGAGAGGCGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
1 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
78387 TTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
66 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
78452 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
131 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
*
78517 CGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
196 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
*
78582 CTTGTATTTTTTTTGGCATGCAC-AAAAAATTCAGCT-AAAACTCGAAGTGTACAGGATTTTGTG
261 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
78645 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
326 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
78710 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
391 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * *
78775 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-ACCCCCCCACCGCCCCAA-CACCGG
456 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCCGCCCCCCCAATCGCCGG
** * * ** ** * * * *
78838 AACCCTTATGCTGTCGGTCACATTCTCCGACGATGCTTCGACGATGGTGGCCCAGGCAAAAAAAA
521 AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGT-GCCCTGGGAGAAAAAA
* * * * * *
78903 ATGTGACACCAGCAAATGCTCGAGCCAAGCATGTGCACCTGCAACCCTCGGTCTGGTCTGATCTT
585 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTC-GGTCTGATCTT
* *
78968 ACACTGGGAATGAACTCGGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACG
649 ACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* ** ** * * * *
79033 AAATGAGCGTGCGGGCTTTCAGTTGGCCAGAGGGGTAGGATGCGTAAGCCGGGGATCAACCGGGT
714 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGT
* * * * * * *
79098 CCCCCCTGCATGCTACCGATCCTCCTGCCGCAACCCTCAATCCGGTCCGATCTTAGACTGGGAAT
779 CCCCCCTGCGTGCTACCGATCCTGCTACCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAAT
* * * *
79163 GAACTCCGTATACCTAAGCCAATCAACGAAACGAGCGGGCGGGCGAGCACTACG
844 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
* * * * * *
79217 CTGGCCCGAGAGGCAGGATGCGCAAGCCGTGGATCAATAGGGTGATAGGTGGGTTTAGGCACAAC
1 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
79282 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGC
66 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
79347 CTTCATGCGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
131 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
*
79412 CGGTTCGGGATTTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
196 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
*
79477 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAGGATTTTGTG
261 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
79542 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
326 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
79607 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGGCCAATATAAG
391 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
79672 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCTCGCCCCCCCAATCGTCGG
456 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCCGCCCCCCCAATCGCCGG
* * * * * *
79736 AACCCCAATGCCACAGGTTAGGTTCTCCAGCGAT--T-----G-T-G-GCCC-GGGCGAAAAATA
521 AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCTGGGAGAAAAA-A
* * *
79790 ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCTCAACCCTTGGTTCGGTCTGATCTT
585 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGG-TCGGTCTGATCTT
** * * **
79855 ACACTGGGAATTCACTCTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATT
649 ACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * *
79920 AAACGAGCGTGCGGGCGCTCTGCCGGCCAGAGGGGTAGGATGCGCAAGCCGAGGATCGATCGGGT
714 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGT
** * * * * *
79985 CCCCCCCTTTGTGCTGCC-ATTCTTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGA
779 -CCCCCCTGCGTGCTACCGA-TCCTGCTACCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGA
* ** *
80049 ATGAACTCCGTATGCCTAAGCCAATCGATAAAACGAGCGGGCGGGCGGGCACTATG
842 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
* * * * * *
80105 TCGGCCAGAGAGGCAGGTTGCGCATGTCGTGGATCGATAGGGTGGTAGGTGGATTTAGGCACATC
1 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
80170 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
66 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * **
80235 CTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTA
131 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * * *
80300 CGGTCCGGGATTTTTTTAAAATTTTTTTAGAAGGATTTTTGGCCCCAAACTTGGTAAACGTGATC
196 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
80365 CTTGTATTTTTTGTT-GCAATGCAC-AAAAAATTCAGGCT-AAAACTCGAAGTGTACAGGATTTT
261 CTTGTA-TTTTTGTTGGC-ATGCACAAAAAAATTCA-GCTAAAAACTCGAAGTGTACAGGATTTT
*
80427 CTGA-CATTTGAAAAAAGTGT-CCCATTTCAGACACTTT-ATGGGCTACTGGCAGCAAACCTGTA
323 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT-GGCTACTGGCAGCAAACCTGTA
*
80489 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGATAAGGGGCCAATA
387 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT-
* * * * *
80553 ATAAGGGGCCAAGTACCAGCACCCATCACACATCATGAAGTG--CACA--GCCCC-CCCCCCTAA
451 ATAA-GGGCCAAGTACCAGCACCCATCGCACATCATG-TGCGCACACACCCCCCCGCCCCCCCAA
* * *
80613 TCGTCGAAAACCCCAATTGCCGTCCGGTCAAGGTCTCTCCGACG-GA--CTCCGGCCGATGGTG-
514 TCGCCG-GAACCCCAA-TGCCG-CCGGTC-AGGT-TCTCCG--GTGATGCTCC-GACGATGGTGC
* * * * *
80674 CCTCGGTGCGAAAAAAAATATCAGCACCAGCACATTCCTGAGGCCCAAGCATGTGGCACCCGCAA
571 CCT-GG-GAG-AAAAAAAT-GCGGCACCAGCACATGCCCGA-GCCC-AGCATGT-GCACCCGCAA
* * *
80739 CCCT-GATCGGTCTGA-CTTACACTAGGAAATGAACT-CATA-GCTTAGACT-GGAATGAACTTC
629 CCCTCGGTCGGTCTGATCTTACACT-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC-TC
* * * *
80799 CGTATG-CTGAGTC-ACCCAC-TAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCAGGATGC
692 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGC
* * * * **
80861 ACAAGCCAGGGATCGGTCGGGTCCCCCCCTGCGTACTACCGATCCTGCTACCACAACCCTCTCTC
757 GCAAGCCGGGGATCGATCGGGT-CCCCCCTGCGTGCTACCGATCCTGCTACCACAACCCTCAGTC
* * * *
80926 TGGTCTAATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAGCGGGCGG
821 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
*
80991 GCGGGCACTATG
886 GCGGGCACTACG
* * * *
81003 CCGACCAAAGAGGAGGGATGCGCAAGCCGTGGATCGATACGGTGGTAGGTGGGTTTAGGCACATC
1 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * * * *
81068 ATCATATTACTGCCATGCCAATTCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGT
66 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
*
81133 CTTCATGTGAAGTTTAATGGCAAGACGACTCGGTTTT-TATTTTTCACGATTTTTGAAACTTTTT
131 CTTCATGTGAAGTTTCATGGCAAGACGACTC-GTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * * * * * *
81197 ACGTTTTGGGATTTGTTAAAAATTTTTTCAGAAGGCGTTTTGGCCCCAAACTCGGTAGACATGAT
195 ACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
81262 CCTTCTATTTTTTGTTGGAATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
260 CCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
*
81327 TGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT-ATGGCTACTGGCAGCAAACCTGTAAA
324 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
81391 ATCTCAAAATGCTCTTTAAGGGGGTGTGA-TTCTCGGGGTTTGATGAGAGATAGGGGGCCAATCA
389 ATCTC-AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT-A
**
81455 TAAGGGCCAAGTACCAGCACCCATCG-ACATCATGTGCG--CACA---------CCATCCAA--G
452 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCCGCCCCCCCAATCG
*
81506 --GGAACCCC--T---GCC-GTCAGGTTCTCC----ATGCTCCGAC-ATGGTGCCCCGGGA-AAA
517 CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCTGGGAGAAA
* * *
81557 AAATTAC-GCACCAGCACATG-CCGAG-CCAGCATGTG--CCCG-AACCCT-TGTCCGGTC-GAT
582 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGT-CGGTCTGAT
81614 CTTACACT-GGAATGAACTCCGTATGCTTAGACT-GGAATGAACTCC-TATG-CTAAGTCAACCC
646 CTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * *
81675 ACGAAA--AACGTGCGGGCGCTCAG-CGACCAGA-GGGCAGGATGCGCAAGCCCGGGATCGATC-
711 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCG
* * *
81735 GGTCCCCCCT--ATGCT-CTGATCCTGCTA--ACAA-CCTCA-TCT-GTTTGATCTTAGACTGGG
776 GGTCCCCCCTGCGTGCTACCGATCCTGCTACCACAACCCTCAGTCTGGTCTGATCTTAGACTGGG
*
81792 AAT-AACT-CGTATGCCTAAGCCAA-CGACGAAACGAGCGGG-AGGCGGGCACTACG
841 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
*
81845 -CGG-TAGAGAGGCGGGATGCG-AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
1 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * * *
81907 TTCATATTTCTACCATG-C-ATG-CAATTTTATGGCTTGT-AATTAATACAATGGTCCTTTAAGC
66 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * * ** *
81968 CCTCATGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGACTTTCAAAAGTTTTTA
131 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* ** * * * ** * *
82033 CAGTTTAGAATTTTTTTAAAATTTTATCAGATGGAGTTTTGGCCCCAATTTTGGCAGATGTGATC
196 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * * *
82098 CTTGTATTTTTGTTGGCATGCACAAAACAATTCAACTAAAAACTCAAAGTGTACAAGATTTTGTG
261 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
82163 ACCATTTGAAAAAAGT-TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
326 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
82227 CTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATGAG
391 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
** *
82292 GGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACACCCCCCCG-CCCCCCAATCATCAG
456 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCCGCCCCCCCAATCGCCGG
* * * * * * *
82354 AACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCTGGCGATGGTGCTCCAGGTCAAAAAAA
521 AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGC-CCTGG-GAGAAAAA
* * **
82419 AATGCGGCACCAGCACATGCTCGAGCCCAGCTTGTGCACCCATAACCCTCGGTCTGGT-TCGATC
584 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTC-GGTCT-GATC
82483 TTACACTGGGAATG-A------A--CTT---C---G--T-AA----G-A---CTAAGTCAACCCA
647 TTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * *
82522 CGAAACGAGCCTACGAGCGCTCAGCCAGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCGGTCGG
712 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGG
* * * * * * * **
82587 GTCCCCCATACGTACTGCCGATCCTACTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTAAGA
777 GTCCCCCCTGCGTGCTACCGATCCTGCTACCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGA
* *
82652 ATGAACTTCGTATGCGTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
842 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
** * **
82708 CCACCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTATACACATC
1 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
82773 TTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGC
66 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
82838 ATTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
131 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * ** *
82903 CAGTTTGGGATTTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCAGCAAACTTGGTAGACATGAT
196 CGGTTCGGGA-TTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
82968 CCTTGTATTTTTGTTGGCACGCACAAAAAAAATTCAGCTAAAAACTCGACGTGTATAGGATTTTG
260 CCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
* * * * *
83033 CGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGGTACTAGTAGCAAACCTGTAAA
324 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
83098 ATATCAAATGCTCTTTAAGGGGGTTTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
389 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
** *
83163 AGGAACAAGTACCAGCACCCATCGCACATCATGTGTGCACACCACCCCTCCCGCCCCCCCAATCG
454 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CACCCC-CCCGCCCCCCCAATCG
* * * ***
83228 CTGGAACCCCAATGCCGCTGATCAGG-T-T----T--T-CT--GACGATGGTG-CCTCGTTTGAA
517 CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCT-GGGAGAA
* * *
83281 AAAAACGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCGCAACCCTCGATCCGGTCCGA
581 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAA-CC-C--T-CGGT-CG-
* *
83346 TCTTGCACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGA
639 ----G-TCT--G-AT---CT---TA--C----ACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* *
83411 ATGAACTCCGTATGCCTAA-TCAACCCACGGAAACGAGCGTGCGGGCACTCAGCCTGCCAGAGGG
684 ATGAACTCCGTATGCCTAAGTCAACCCAC-GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * ** * * * * * *
83475 GCAGGATGAGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCGTGTTGCCAATCCTGGTGCCGCAA
748 GCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCC-CTGCGTGCTACCGATCCTGCTACCACAA
* ** * * * *
83540 CCCTCGGTCTGGTCTGATCTTAGAAAGGAAATGAACTCTGCATGCCTAAGCCAACCGATGAAACG
812 CCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
*
83605 AGCGGGCGGGTGGGCACTACG
877 AGCGGGCGGGCGGGCACTACG
* * *
83626 TCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTAGGTTTAGGCACATC
1 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * * *
83691 TTCATATTTCTACCATGCCAATGCCATTTATATGGCTTATAAATTCATGCAATGGTCCCTTAAGC
66 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
*
83756 CTTCATGTGAAGTTACATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
131 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * * * * * *
83821 CAGTTCGAGATTTTTTGAAAATTTTTTTAGAAGGCGTTTTGGCACCAAACTTGGTAGACATGATC
196 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* ** * * *
83886 CTTGTATTTTTTTTGGCCCGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATACGATTTTATG
261 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
* *
83951 ACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAAT
326 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
84016 CTCAAACGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GAGGCCAATATAAG
391 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
*
84080 GGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACACACTCCCCCCGCCCCCCCAATCGCCG
456 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACAC-CCCCCCGCCCCCCCAATCGCCG
* *
84145 GAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATAGTGCCCTGGGGGAAAAAA
520 GAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCTGGGAGAAAAAA
* * * *
84210 ATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCTGTAACCCTCGAATCGGTCCT-ATCT
585 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCG-GTCGGT-CTGATCT
* * ** * *
84274 TACACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTTTGTATGCCTACGTCAACCCAT
648 TACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * * *
84339 GAAACGAGCTTGCGGGTGCTCAACCGGCCAGAGGGACAGGATGCGCAAGCCGAGGATCGACCGAG
713 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGG
* * * * * * * *
84404 -CCCCCCTACATGTTGCCGATCCTACTGCCACAAACCTCAGTCTGGTCCGATCTTAGACTGGGAA
778 TCCCCCCTGCGTGCTACCGATCCTGCTACCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAA
* * * *
84468 TGAACTCCGTCTGCCTAAGCCAACCGACGAAACGTGCGGGCGGACGGGTACTACG
843 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
* * * * * *
84523 CTGGCCAGAGATGAGGGAAGCGCAAGCTGTGGATGGATAGGGTGGTAGGTGGGTTTAGGCACATC
1 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
84588 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
66 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
84653 CTTCATGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACATTTTA
131 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * *
84718 CGATTCGGGATTTTTTT-AAATTTTTTCAGAAGGAGTTTTGGCCCTAAACTTGGT-GAACCTGAT
196 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG-ACGTGAT
* *
84781 CCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAGGATTTTGT
260 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGT
* *
84846 GACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAA
325 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
84911 TCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGTGGCCAATATAA
390 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * *
84976 GGGCCAAGTACCAGCACCCATCGCACATTATGTACG--CACA-CCCCCCG-CCCCCCAATCGACG
455 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCCGCCCCCCCAATCGCCG
* * *
85037 GAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCAC-GGGCAAAAAA
520 GAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCC-CTGGG-AGAAAA
* * * * * * * ** *
85101 AAATACGACACCAGCACATGCCCAAGTCAAGCATGTGCACCAGCAACCCTTGGTCCAATCCGATC
583 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGT-CGGTCTGATC
*
85166 TTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACA
647 TTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * **** * *
85231 CGAAACGAGCGTGCGGGCGCTCAACCGGCTAGAGGTGTAGGATGCATTGGTCGGGGATCG-GCTG
712 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATC-G
* * * * *** * * **
85295 TGTCCCCTCTGCGTGCTACCGATCTTCCTACTGTAAGCCT-TGATGC-GGTCCAATCTTAGACTG
776 GGTCCCCCCTGCGTGCTACCGATCCTGCTACCACAACCCTCAG-T-CTGGTCTGATCTTAGACTG
* * * * * * *
85358 GGAATGAACTCTGTATGCCTAAGCCAACCGAGGAAATGAGCGGGCAGACGAGCACAACG
839 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
* * * * *
85417 CCGGCCAGAGAGGCGGGATGCACAAGCCGTTGATCGATAGGATGGCAAGTGGGTTTAGGCACATC
1 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
85482 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTATGC
66 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
85547 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTAATGATTTTTGAAACTTTTTA
131 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* *
85612 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTCT-ACCCCAAACTTGGTAGACATGAT
196 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTT-TGGCCCCAAACTTGGTAGACGTGAT
* * * *
85676 CCTTGTATTTTT-CTGGCATGCAGAAAACAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGT
260 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGT
*
85740 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAA
325 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * * **
85805 TCTCAAATGCTCTTTGAGGGGCTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGTTCCAATATAA
390 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * *
85870 GGGCCAAGTACCAGCACCCATCGCACACCATGTACGCACACA-CCCCCCG--CCCCCAATCTCTG
455 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCCGCCCCCCCAATCGCCG
* * * *
85932 GAACCCCAATGCCGTCGGTTAGGTTCTCCGGTGATGCTCTGACGATGGTGCCCCAGGCGAGAAAA
520 GAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTG-CCCTGG-GAGAAAA
* * * * * * * * * *
85997 AAATACGACATCAGCACATGCCCGAGCCCAGCATGTACACCCACAATCCTTGGTTTGGTTTGACC
583 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGG-TCGGTCTGATC
* * * *
86062 TTACACTGGCAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCAA
647 TTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * * *
86127 TGAAACGAGCGTGTGGGCGCTCAGTCGGTCGGAGGGGCAGGATGCGCAAGCCAGGGATCGGTCAG
712 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGG
** ** * * * *
86192 GTCCCCCCTATGTGCTGTCGATCCTGCTGCCATAACCCTC-GATTTGGTCTGATCTTAGACTAGG
777 GTCCCCCCTGCGTGCTACCGATCCTGCTACCACAACCCTCAG-TCTGGTCTGATCTTAGACTGGG
* * * *
86256 AATGAACTCCGTATACCTAAGCCAACTGACGAAACGAGCAGGCGGGTGGGCACTACG
841 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
* * * *
86313 CCGGCCAGAGAGGCGGGATGCACAAGCCATTGATCGATAGGGTGGTAGGTGGGTTCAGGCACATC
1 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
86378 TTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
66 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * * *
86443 CTTCATGTGAAGTTTCATGGCAAGACAACTCATTTTTTATTTTTCATGATTTTTGAAACTTTCTA
131 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * *
86508 CGGTTCGAGATTTTTTTAAAACTTTTTCAGAAGTAGTTTTGGCCCCAAACTTGGTAGACGTGATC
196 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * * * ** * **
86573 CTTGTATTTTTTTTGGCTTGCACAAAACATTTTGGCTAAAAACTCGAAATGTATTGGATTTTGTG
261 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
* *
86638 ACCATTTGAAAAAAGTGTCCTCATTTC-GAACACTTTAATGGCTACTGGTAGCAAACCTGTAAAA
326 ACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
86702 TCTCAAATGCTCTTTAAGGGGGTCTGAGTTCTTGACGTTTGATGAGGGATAGGGGGCCAATATAA
390 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * *
86767 GGGCCAAGTACTAGTACCCATCGCACATCATGTGCG--CACA-CCCCCCG-CCCCCCAATCACCA
455 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCCGCCCCCCCAATCGCCG
* * ** * * *
86828 GAACGCCAATGCCGCCGGTCAGGTTCTCTGACGATGCTCCGGCGATGGTGCCCTAGGTGAAAAAA
520 GAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCTGGGAGAAAAAA
* * * *
86893 AAGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCACAACCCTCGGTCCGGTCTGATCTC
585 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGT-CGGTCTGATCTT
* * *
86958 ACACTAGGAGTGAACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACG
649 ACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * ** *
87023 AAACAAGCGTGCGGACGCTCAGCCGACCAGAGGGGCAGGATGCCCAAGCCGGGGA-AAAGCTGGG
714 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATC-GGG
* * * * * * * * *
87087 TCCCTCTTGTGTGCTACCAATCTTGCTATCGCAACCCTC-GATCTGATCTGATGTTAGACTGGGA
778 TCCCCCCTGCGTGCTACCGATCCTGCTACCACAACCCTCAG-TCTGGTCTGATCTTAGACTGGGA
87151 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
842 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
* * *
87207 CCGGCCAGAGAGGCGGGATAGC-CAAGCCATCGGATCGATAGGGTGGCAGGTGGGTTTAGCCACA
1 CCGGCCAGAGAGGCGGGAT-GCGCAAGCCGT-GGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * * *
87271 TCTTCATATTTTTGCCATGCAAATGCCATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAT
64 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
87336 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTAACGATTTTTGAAACTTTT
129 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * *
87401 TACGGTTTC-GAATTTTTTTAAAATTTTTTTAGAAGGAGTTTCGGCCCCAAACTTGGTAGACGTG
194 TACGG-TTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* *
87465 ATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
258 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
* * * *
87530 GTGACCATTTGAAAAAAGTATCCCCATTTTAGACACTTTTATGG-TATTGGCAGCAAACCTGTAA
323 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
87594 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGGTGAGGGATAGGGGGCCAATAT
388 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
*
87659 AAGGGCCAAGTAGCAGCACCCATCGCACATCATGTGCGCACACCACCCCCCCGCCCCCCCAATCG
453 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CACCCCCCCGCCCCCCCAATCG
* * * ** *
87724 TCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTTCGGTGATGGTG-CCTCGGGCAAA
517 CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCT-GGG-AGA
* * * *
87788 AAAAAATGCGACACCAGCACATGCCCAAGCCCAGCATGTGCACCCGTAACCCTCGGTCCGATCTG
580 AAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGT-CGGTCTG
* * *
87853 ATCTTATACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCATATGC
644 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
87908 TTAGACTGGA
Statistics
Matches: 8340, Mismatches: 995, Indels: 499
0.85 0.10 0.05
Matches are distributed among these distances:
833 67 0.01
834 150 0.02
835 129 0.02
836 14 0.00
837 2 0.00
838 1 0.00
839 55 0.01
840 14 0.00
841 2 0.00
842 18 0.00
843 15 0.00
844 15 0.00
845 4 0.00
846 43 0.01
847 3 0.00
848 19 0.00
849 10 0.00
850 26 0.00
851 22 0.00
852 17 0.00
853 4 0.00
854 16 0.00
855 4 0.00
856 38 0.00
857 19 0.00
858 41 0.00
859 40 0.00
860 52 0.01
861 28 0.00
862 22 0.00
863 29 0.00
864 3 0.00
865 65 0.01
866 69 0.01
867 28 0.00
868 16 0.00
869 30 0.00
870 91 0.01
871 70 0.01
872 60 0.01
873 141 0.02
874 4 0.00
875 3 0.00
876 7 0.00
877 11 0.00
878 35 0.00
879 5 0.00
880 2 0.00
881 1 0.00
882 2 0.00
884 15 0.00
885 29 0.00
886 104 0.01
887 230 0.03
888 389 0.05
889 23 0.00
890 5 0.00
891 12 0.00
892 74 0.01
893 171 0.02
894 894 0.11
895 983 0.12
896 1020 0.12
897 1028 0.12
898 457 0.05
899 215 0.03
900 218 0.03
901 82 0.01
902 32 0.00
903 23 0.00
904 8 0.00
905 15 0.00
906 1 0.00
908 3 0.00
909 2 0.00
911 2 0.00
913 1 0.00
914 43 0.01
915 55 0.01
916 153 0.02
917 138 0.02
918 282 0.03
920 5 0.00
921 2 0.00
922 1 0.00
923 3 0.00
924 2 0.00
925 55 0.01
926 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCCGCCCCCCCAATCGCCGG
AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCTGGGAGAAAAAAA
TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCGGTCTGATCTTAC
ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCC
CCCCTGCGTGCTACCGATCCTGCTACCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
Found at i:85194 original size:26 final size:26
Alignment explanation
Indices: 85165--85217 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
85155 CCAATCCGAT
85165 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
85191 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
85217 C
1 C
85218 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:86101 original size:26 final size:26
Alignment explanation
Indices: 86061--86113 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
86051 TTGGTTTGAC
86061 CTTACACTGGCAATGAACTCTGTATG
1 CTTACACTGGCAATGAACTCTGTATG
* *
86087 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGCAATGAACTCTGTATG
86113 C
1 C
86114 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTACACTGGCAATGAACTCTGTATG
Found at i:86427 original size:896 final size:896
Alignment explanation
Indices: 77425--87907 Score: 13263
Period size: 896 Copynumber: 11.8 Consensus size: 896
77415 GATCCTGCCA
*
77425 CCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
1 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
77490 TTCATATTTCTGCCATGCCATTGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGC
66 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
77555 CTTCATGTGAAGTTTCACGGCAACACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
131 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * *
77620 TGGTTCGGAATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
196 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
77685 CTTGTATTTTTGATGGCATGCATAAAAAAATTAAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
261 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
*
77750 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAAT
326 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
77815 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGGGCCAATATAAG
391 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * *
77880 GGCTAAGTACTAGCACCCATCGCACATCATGTGTG--CACACCCCCCGCTCCCCCAATCGCTGGA
456 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCGC-CCCCCAATCTC-GGA
* * * * * * * *
77943 ACCCCAATGGCACCGGTCAGGTTTTTCGGTGATGGTCGGACGATGGTGCCCTGGGCGAAAAACAA
519 ACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGCCCCGGGCGAAAAAAAA
* * * *
78008 TGCGACACCAGCACATTCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCTGGTCCGATCTTA
584 TGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCTGATCTTA
* *
78073 CACTGGGAATGAACTCCGTGTGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
649 CACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * *
78138 AACAAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCTGGGGATTGATCGGGTC
714 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGT-
*** *
78203 CCCCCCTGCGTGCTACCGATCAAACTACCACAACCCTCGAT-TCGGTCTGATCTTAGACTTGGAA
778 CCCCCCTGCGTGCTACCGATCCTGCTACCACAACCCTCGATCT-GGTCTGATCTTAGACTGGGAA
78267 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
842 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
* *
78322 TCGGCCAGAGAGGCGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
1 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
78387 TTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
66 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
78452 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
131 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
*
78517 CGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
196 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
*
78582 CTTGTATTTTTTTTGGCATGCAC-AAAAAATTCAGCT-AAAACTCGAAGTGTACAGGATTTTGTG
261 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
78645 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
326 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
78710 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
391 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
78775 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-ACCCCCCCACCGCCCCAA-CACCGG
456 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACA-CCCCCCGCC-CCCCAATC-TCGG
** * * ** ** * * *
78838 AACCCTTATGCTGTCGGTCACATTCTCCGACGATGCT-TCGACGATGGTGGCCCAGGCAAAAAAA
518 AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCT-GACGATGGTGCCCCGGGCGAAAAAA
* * * * * *
78902 AATGTGACACCAGCAAATGCTCGAGCCAAGCATGTGCACCTGCAACCCTCGGTCTGGTCTGATCT
582 AATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCTGATCT
* *
78967 TACACTGGGAATGAACTCGGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAC
647 TACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* ** ** * * ***
79032 GAAATGAGCGTGCGGGCTTTCAGTTGGCCAGAGGGGTAGGATGCGTAAGCCGGGGATCAACCGGG
712 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGG
* * * * * * *
79097 TCCCCCCTGCATGCTACCGATCCTCCTGCCGCAACCCTCAATCCGGTCCGATCTTAGACTGGGAA
777 TCCCCCCTGCGTGCTACCGATCCTGCTACCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAA
* * * *
79162 TGAACTCCGTATACCTAAGCCAATCAACGAAACGAGCGGGCGGGCGAGCACTACG
842 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
* * * * * *
79217 CTGGCCCGAGAGGCAGGATGCGCAAGCCGTGGATCAATAGGGTGATAGGTGGGTTTAGGCACAAC
1 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
79282 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGC
66 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
79347 CTTCATGCGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
131 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
*
79412 CGGTTCGGGATTTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
196 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
*
79477 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAGGATTTTGTG
261 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
79542 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
326 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
79607 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGGCCAATATAAG
391 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
79672 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCTCGCCCCCCCAATCGTCGG
456 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCC-CG-CCCCCCAATC-TCGG
* * * * * *
79736 AACCCCAATGCCACAGGTTAGGTTCTCC----A------G-CGATTGTGGCCCGGGCGAAAAATA
518 AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGCCCCGGGCGAAAAAAA
* * * * *
79790 ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCTCAACCCTTGGTTCGGTCTGATCTT
583 ATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCTGATCTT
** * * **
79855 ACACTGGGAATTCACTCTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATT
648 ACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * *
79920 AAACGAGCGTGCGGGCGCTCTGCCGGCCAGAGGGGTAGGATGCGCAAGCCGAGGATCGATCGGGT
713 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGT
** * * * * *
79985 CCCCCCCTTTGTGCTGCC-ATTCTTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGA
778 -CCCCCCTGCGTGCTACCGA-TCCTGCTACCACAACCCTCGATCTGGTCTGATCTTAGACTGGGA
* ** *
80049 ATGAACTCCGTATGCCTAAGCCAATCGATAAAACGAGCGGGCGGGCGGGCACTATG
841 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
* * * * * *
80105 TCGGCCAGAGAGGCAGGTTGCGCATGTCGTGGATCGATAGGGTGGTAGGTGGATTTAGGCACATC
1 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
80170 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
66 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * **
80235 CTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTA
131 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * * *
80300 CGGTCCGGGATTTTTTTAAAATTTTTTTAGAAGGATTTTTGGCCCCAAACTTGGTAAACGTGATC
196 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
80365 CTTGTATTTTTTGTT-GCAATGCAC-AAAAAATTCAGGCT-AAAACTCGAAGTGTACAGGATTTT
261 CTTGTA-TTTTTGTTGGC-ATGCACAAAAAAATTCA-GCTAAAAACTCGAAGTGTACAGGATTTT
*
80427 CTGA-CATTTGAAAAAAGTGT-CCCATTTCAGACACTTT-ATGGGCTACTGGCAGCAAACCTGTA
323 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT-GGCTACTGGCAGCAAACCTGTA
*
80489 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGATAAGGGGCCAATA
387 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT-
* * * * *
80553 ATAAGGGGCCAAGTACCAGCACCCATCACACATCATGAAGTG--CACAGCCCCC-CCCCCTAATC
451 ATAA-GGGCCAAGTACCAGCACCCATCGCACATCATG-TGCGCACACACCCCCCGCCCCCCAATC
* * * *
80615 GTCGAAAACCCCAATTGCCGTCCGGTCAAGGTCTCTCCGACG-GA--CTCCGGCCGATGGTGCCT
514 -TCG-GAACCCCAA-TGCCG-CCGGTC-AGGT-TCTCCG--GTGATGCT-CTGACGATGGTGCCC
* * *
80677 CGGTGCGAAAAAAAATATC-AGCACCAGCACATTCCTGAGGCCCAAGCATGTGGCACCCGCAACC
570 CGG-GCGAAAAAAAAT-GCGA-CACCAGCACATGCCCGA-GCCC-AGCATGT-GCACCCGCAACC
* * *
80741 CT-GAT-CGGTCTGA-CTTACACTAGGAAATGAACT-CATA-GCTTAGACT-GGAATGAACTTCC
629 CTCGGTCCGGTCTGATCTTACACT-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC-TCC
* * * * *
80800 GTATG-CTGAGTC-ACCCAC-TAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCA
692 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCG
* * **
80862 CAAGCCAGGGATCGGTCGGGTCCCCCCCTGCGTACTACCGATCCTGCTACCACAACCCTCTCTCT
757 CAAGCCGGGGATCGGTCGGGT-CCCCCCTGCGTGCTACCGATCCTGCTACCACAACCCTCGATCT
* * * *
80927 GGTCTAATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAGCGGGCGGG
821 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
*
80992 CGGGCACTATG
886 CGGGCACTACG
* * * *
81003 CCGACCAAAGAGGAGGGATGCGCAAGCCGTGGATCGATACGGTGGTAGGTGGGTTTAGGCACATC
1 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * * * *
81068 ATCATATTACTGCCATGCCAATTCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGT
66 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
*
81133 CTTCATGTGAAGTTTAATGGCAAGACGACTCGGTTTT-TATTTTTCACGATTTTTGAAACTTTTT
131 CTTCATGTGAAGTTTCATGGCAAGACGACTC-GTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * * * * * *
81197 ACGTTTTGGGATTTGTTAAAAATTTTTTCAGAAGGCGTTTTGGCCCCAAACTCGGTAGACATGAT
195 ACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
81262 CCTTCTATTTTTTGTTGGAATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
260 CCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
*
81327 TGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT-ATGGCTACTGGCAGCAAACCTGTAAA
324 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
81391 ATCTCAAAATGCTCTTTAAGGGGGTGTGA-TTCTCGGGGTTTGATGAGAGATAGGGGGCCAATCA
389 ATCTC-AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT-A
** *
81455 TAAGGGCCAAGTACCAGCACCCATCG-ACATCATGTGCG--CACA-------CCATCCAA---GG
452 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCGCCCCCCAATCTCG
*
81507 GAACCCC--T---GCC-GTCAGGTTCTCC----ATGCTCCGAC-ATGGTGCCCC-GG-GAAAAAA
517 GAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGCCCCGGGCGAAAAAA
* * *
81559 ATTACG-CACCAGCACATG-CCGAG-CCAGCATGTG--CCCG-AACCCT-TGTCCGGTC-GATCT
582 AATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCTGATCT
81616 TACACT-GGAATGAACTCCGTATGCTTAGACT-GGAATGAACTCC-TATG-CTAAGTCAACCCAC
647 TACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * *
81677 GAAA--AACGTGCGGGCGCTCAG-CGACCAGA-GGGCAGGATGCGCAAGCCCGGGATCGATC-GG
712 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGG
* * *
81737 TCCCCCCT--ATGCT-CTGATCCTGCTA--ACAA-CCTC-ATCT-GTTTGATCTTAGACTGGGAA
777 TCCCCCCTGCGTGCTACCGATCCTGCTACCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAA
*
81794 T-AACT-CGTATGCCTAAGCCAA-CGACGAAACGAGCGGG-AGGCGGGCACTACG
842 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
*
81845 -CGG-TAGAGAGGCGGGATGCG-AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
1 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * * *
81907 TTCATATTTCTACCATG-C-ATG-CAATTTTATGGCTTGT-AATTAATACAATGGTCCTTTAAGC
66 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * * ** *
81968 CCTCATGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGACTTTCAAAAGTTTTTA
131 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* ** * * * ** * *
82033 CAGTTTAGAATTTTTTTAAAATTTTATCAGATGGAGTTTTGGCCCCAATTTTGGCAGATGTGATC
196 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * * *
82098 CTTGTATTTTTGTTGGCATGCACAAAACAATTCAACTAAAAACTCAAAGTGTACAAGATTTTGTG
261 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
82163 ACCATTTGAAAAAAGT-TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
326 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
82227 CTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATGAG
391 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
*
82292 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGCCCCCCAATCATCAGAA
456 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCGCCCCCCAATC-TCGGAA
* * * * * *
82356 CCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCTGGCGATGGTGCTCCAGGTCAAAAAAAAA
520 CCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGC-CCCGGGCGAAAAAAAA
* * * ** *
82421 TGCGGCACCAGCACATGCTCGAGCCCAGCTTGTGCACCCATAACCCTCGGTCTGGT-TCGATCTT
584 TGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCT-GATCTT
82485 ACACTGGGAATG-A------A--CTT---C---G--T-AA----G-A---CTAAGTCAACCCACG
648 ACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * *
82524 AAACGAGCCTACGAGCGCTCAGCCAGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCGGTCGGGT
713 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGT
* * * * * * * **
82589 CCCCCATACGTACTGCCGATCCTACTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTAAGAAT
778 CCCCCCTGCGTGCTACCGATCCTGCTACCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAAT
* *
82654 GAACTTCGTATGCGTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
843 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
** * **
82708 CCACCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTATACACATC
1 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
82773 TTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGC
66 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
82838 ATTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
131 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * ** *
82903 CAGTTTGGGATTTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCAGCAAACTTGGTAGACATGAT
196 CGGTTCGGGA-TTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
82968 CCTTGTATTTTTGTTGGCACGCACAAAAAAAATTCAGCTAAAAACTCGACGTGTATAGGATTTTG
260 CCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
* * * * *
83033 CGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGGTACTAGTAGCAAACCTGTAAA
324 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
83098 ATATCAAATGCTCTTTAAGGGGGTTTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
389 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
** * *
83163 AGGAACAAGTACCAGCACCCATCGCACATCATGTGTGCACACCACCCCTCCCGCCCCCCCAATCG
454 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CA-CCC-CCCG-CCCCCCAATCT
* * * ***
83228 CTGGAACCCCAATGCCGCTGATCAGG---T----T--T--TCTGACGATGGTGCCTCGTTTGAAA
515 C-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGCCCCGGGCGAAA
* *
83282 AAAACGTG-G-CACCAGCACATGCCCGAGCCTAGCATGTGCACCCGCAACCCTCGATCCGGTCCG
579 AAAA-ATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAA-CC-C--T-CGGTCCG
* *
83345 ATCTTGCACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGG
638 -----G-TCT--G-AT---CT---TA--C----ACTGGGAATGAACTCCGTATGCTTAGACTGGG
* *
83410 AATGAACTCCGTATGCCTAA-TCAACCCACGGAAACGAGCGTGCGGGCACTCAGCCTGCCAGAGG
682 AATGAACTCCGTATGCCTAAGTCAACCCAC-GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * * * * *
83474 GGCAGGATGAGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCGTGTTGCCAATCCTGGTGCCGCA
746 GGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCC-CTGCGTGCTACCGATCCTGCTACCACA
* ** * * * *
83539 ACCCTCGGTCTGGTCTGATCTTAGAAAGGAAATGAACTCTGCATGCCTAAGCCAACCGATGAAAC
810 ACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
*
83604 GAGCGGGCGGGTGGGCACTACG
875 GAGCGGGCGGGCGGGCACTACG
* * *
83626 TCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTAGGTTTAGGCACATC
1 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * * *
83691 TTCATATTTCTACCATGCCAATGCCATTTATATGGCTTATAAATTCATGCAATGGTCCCTTAAGC
66 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
*
83756 CTTCATGTGAAGTTACATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
131 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * * * * * *
83821 CAGTTCGAGATTTTTTGAAAATTTTTTTAGAAGGCGTTTTGGCACCAAACTTGGTAGACATGATC
196 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* ** * * *
83886 CTTGTATTTTTTTTGGCCCGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATACGATTTTATG
261 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
* *
83951 ACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAAT
326 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
84016 CTCAAACGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GAGGCCAATATAAG
391 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
84080 GGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACACACTCCCCCCGCCCCCCCAATCGCCG
456 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACA--CCCCCCG-CCCCCCAATC-TCG
* * * *
84145 GAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATAGTGCCCTGGG-GGAAAAA
517 GAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGCCCCGGGCGAAAAAA
* * * * *
84209 AATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCTGTAACCCTCGAAT-CGGTCCT-AT
582 AATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCG-GTCCGGT-CTGAT
* * ** *
84272 CTTACACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTTTGTATGCCTACGTCAACCC
645 CTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * **
84337 ATGAAACGAGCTTGCGGGTGCTCAACCGGCCAGAGGGACAGGATGCGCAAGCCGAGGATCGACCG
710 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCG
* * * * * * * * *
84402 AG-CCCCCCTACATGTTGCCGATCCTACTGCCACAAACCTC-AGTCTGGTCCGATCTTAGACTGG
775 GGTCCCCCCTGCGTGCTACCGATCCTGCTACCACAACCCTCGA-TCTGGTCTGATCTTAGACTGG
* * * *
84465 GAATGAACTCCGTCTGCCTAAGCCAACCGACGAAACGTGCGGGCGGACGGGTACTACG
839 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
* * * * * *
84523 CTGGCCAGAGATGAGGGAAGCGCAAGCTGTGGATGGATAGGGTGGTAGGTGGGTTTAGGCACATC
1 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
84588 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
66 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
84653 CTTCATGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACATTTTA
131 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * *
84718 CGATTCGGGATTTTTTT-AAATTTTTTCAGAAGGAGTTTTGGCCCTAAACTTGGT-GAACCTGAT
196 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG-ACGTGAT
* *
84781 CCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAGGATTTTGT
260 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGT
* *
84846 GACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAA
325 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
84911 TCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGTGGCCAATATAA
390 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * *
84976 GGGCCAAGTACCAGCACCCATCGCACATTATGTACG--CACACCCCCCGCCCCCCAATCGACGGA
455 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCGCCCCCCAATC-TCGGA
* * * * *
85039 ACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCACGGGCAAAAAAAAA
519 ACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGCCCCGGGCGAAAAAAAA
* * * * * * ** *
85104 TACGACACCAGCACATGCCCAAGTCAAGCATGTGCACCAGCAACCCTTGGTCCAATCCGATCTTA
584 TGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCTGATCTTA
*
85169 CACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGA
649 CACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * **** * *
85234 AACGAGCGTGCGGGCGCTCAACCGGCTAGAGGTGTAGGATGCATTGGTCGGGGATCGG-CTGTGT
714 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTC-GGGT
* * * *** * * **
85298 CCCCTCTGCGTGCTACCGATCTTCCTACTGTAAGCCTTGATGC-GGTCCAATCTTAGACTGGGAA
778 CCCCCCTGCGTGCTACCGATCCTGCTACCACAACCCTCGAT-CTGGTCTGATCTTAGACTGGGAA
* * * * * * *
85362 TGAACTCTGTATGCCTAAGCCAACCGAGGAAATGAGCGGGCAGACGAGCACAACG
842 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
* * * * *
85417 CCGGCCAGAGAGGCGGGATGCACAAGCCGTTGATCGATAGGATGGCAAGTGGGTTTAGGCACATC
1 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
85482 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTATGC
66 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
85547 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTAATGATTTTTGAAACTTTTTA
131 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* *
85612 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTCT-ACCCCAAACTTGGTAGACATGAT
196 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTT-TGGCCCCAAACTTGGTAGACGTGAT
* * * *
85676 CCTTGTATTTTT-CTGGCATGCAGAAAACAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGT
260 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGT
*
85740 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAA
325 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * * **
85805 TCTCAAATGCTCTTTGAGGGGCTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGTTCCAATATAA
390 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
85870 GGGCCAAGTACCAGCACCCATCGCACACCATGTACGCACACACCCCCCG-CCCCCAATCTCTGGA
455 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCGCCCCCCAATCTC-GGA
* * *
85934 ACCCCAATGCCGTCGGTTAGGTTCTCCGGTGATGCTCTGACGATGGTGCCCCAGGCGAGAAAAAA
519 ACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGCCCCGGGCGA-AAAAAA
* * * * * * ** * *
85999 ATACGACATCAGCACATGCCCGAGCCCAGCATGTACACCCACAATCCTTGGTTTGGTTTGACCTT
583 ATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCTGATCTT
* * * * *
86064 ACACTGGCAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCAATG
648 ACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * *
86129 AAACGAGCGTGTGGGCGCTCAGTCGGTCGGAGGGGCAGGATGCGCAAGCCAGGGATCGGTCAGGT
713 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGT
** ** * * * *
86194 CCCCCCTATGTGCTGTCGATCCTGCTGCCATAACCCTCGATTTGGTCTGATCTTAGACTAGGAAT
778 CCCCCCTGCGTGCTACCGATCCTGCTACCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAAT
* * * *
86259 GAACTCCGTATACCTAAGCCAACTGACGAAACGAGCAGGCGGGTGGGCACTACG
843 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
* * * *
86313 CCGGCCAGAGAGGCGGGATGCACAAGCCATTGATCGATAGGGTGGTAGGTGGGTTCAGGCACATC
1 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
86378 TTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
66 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * * *
86443 CTTCATGTGAAGTTTCATGGCAAGACAACTCATTTTTTATTTTTCATGATTTTTGAAACTTTCTA
131 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * *
86508 CGGTTCGAGATTTTTTTAAAACTTTTTCAGAAGTAGTTTTGGCCCCAAACTTGGTAGACGTGATC
196 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * * * ** * **
86573 CTTGTATTTTTTTTGGCTTGCACAAAACATTTTGGCTAAAAACTCGAAATGTATTGGATTTTGTG
261 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
* *
86638 ACCATTTGAAAAAAGTGTCCTCATTTC-GAACACTTTAATGGCTACTGGTAGCAAACCTGTAAAA
326 ACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
86702 TCTCAAATGCTCTTTAAGGGGGTCTGAGTTCTTGACGTTTGATGAGGGATAGGGGGCCAATATAA
390 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * *
86767 GGGCCAAGTACTAGTACCCATCGCACATCATGTGCG--CACACCCCCCGCCCCCCAATCACCAGA
455 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCGCCCCCCAATC-TCGGA
* * ** * * ** *
86830 ACGCCAATGCCGCCGGTCAGGTTCTCTGACGATGCTCCGGCGATGGTGCCCTAGGTGAAAAAAAA
519 ACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGCCCCGGGCGAAAAAAAA
* * * *
86895 -GCGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCACAACCCTCGGTCCGGTCTGATCTCA
584 TGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCTGATCTTA
* * *
86959 CACTAGGAGTGAACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
649 CACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * ***
87024 AACAAGCGTGCGGACGCTCAGCCGACCAGAGGGGCAGGATGCCCAAGCCGGGGAAAAG-CTGGGT
714 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTC-GGGT
* * * * * * * * *
87088 CCCTCTTGTGTGCTACCAATCTTGCTATCGCAACCCTCGATCTGATCTGATGTTAGACTGGGAAT
778 CCCCCCTGCGTGCTACCGATCCTGCTACCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAAT
87153 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
843 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
* * *
87207 CCGGCCAGAGAGGCGGGATAGC-CAAGCCATCGGATCGATAGGGTGGCAGGTGGGTTTAGCCACA
1 CCGGCCAGAGAGGCGGGAT-GCGCAAGCCGT-GGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * * *
87271 TCTTCATATTTTTGCCATGCAAATGCCATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAT
64 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
87336 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTAACGATTTTTGAAACTTTT
129 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * *
87401 TACGGTTTC-GAATTTTTTTAAAATTTTTTTAGAAGGAGTTTCGGCCCCAAACTTGGTAGACGTG
194 TACGG-TTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* *
87465 ATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
258 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
* * * *
87530 GTGACCATTTGAAAAAAGTATCCCCATTTTAGACACTTTTATGG-TATTGGCAGCAAACCTGTAA
323 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
87594 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGGTGAGGGATAGGGGGCCAATAT
388 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
*
87659 AAGGGCCAAGTAGCAGCACCCATCGCACATCATGTGCGCACACCACCCCCCCGCCCCCCCAATCG
453 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CA-CCCCCCG-CCCCCCAATC-
* ** * *
87724 TCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCT-TCGGTGATGGTGCCTCGGGCAAA
514 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCT-GACGATGGTGCCCCGGGCGAA
* * *
87788 AAAAAATGCGACACCAGCACATGCCCAAGCCCAGCATGTGCACCCGTAACCCTCGGTCCGATCTG
578 AAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCTG
* * *
87853 ATCTTATACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCATATGC
643 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
87908 TTAGACTGGA
Statistics
Matches: 8338, Mismatches: 999, Indels: 495
0.85 0.10 0.05
Matches are distributed among these distances:
833 67 0.01
834 146 0.02
835 129 0.02
836 17 0.00
837 2 0.00
838 1 0.00
839 55 0.01
840 14 0.00
841 2 0.00
842 18 0.00
843 15 0.00
844 15 0.00
845 4 0.00
846 43 0.01
847 3 0.00
848 19 0.00
849 10 0.00
850 26 0.00
851 22 0.00
852 17 0.00
853 4 0.00
854 16 0.00
855 4 0.00
856 38 0.00
857 19 0.00
858 39 0.00
859 40 0.00
860 54 0.01
861 27 0.00
862 22 0.00
863 29 0.00
864 3 0.00
865 53 0.01
866 78 0.01
867 34 0.00
868 16 0.00
869 31 0.00
870 92 0.01
871 70 0.01
872 60 0.01
873 144 0.02
874 3 0.00
875 2 0.00
876 3 0.00
877 11 0.00
878 35 0.00
879 5 0.00
880 2 0.00
881 1 0.00
882 2 0.00
884 14 0.00
885 26 0.00
886 98 0.01
887 250 0.03
888 388 0.05
889 22 0.00
891 10 0.00
892 74 0.01
893 168 0.02
894 887 0.11
895 995 0.12
896 1038 0.12
897 1008 0.12
898 449 0.05
899 224 0.03
900 220 0.03
901 87 0.01
902 26 0.00
903 22 0.00
904 9 0.00
905 15 0.00
906 1 0.00
908 3 0.00
909 2 0.00
911 2 0.00
913 1 0.00
914 40 0.00
915 55 0.01
916 152 0.02
917 139 0.02
918 282 0.03
920 4 0.00
921 3 0.00
923 4 0.00
924 10 0.00
925 48 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCGCCCCCCAATCTCGGAAC
CCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGCCCCGGGCGAAAAAAAATG
CGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCTGATCTTACA
CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCC
CCCTGCGTGCTACCGATCCTGCTACCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
Found at i:87884 original size:26 final size:26
Alignment explanation
Indices: 87855--87933 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
87845 CCGATCTGAT
*
87855 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
87881 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
87907 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
87933 C
1 C
87934 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:94439 original size:26 final size:26
Alignment explanation
Indices: 94403--94455 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
94393 CTGGTCTGAT
94403 CTTACACTGGGAAAGAACTCCGTATG
1 CTTACACTGGGAAAGAACTCCGTATG
* *
94429 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAAAGAACTCCGTATG
94455 C
1 C
94456 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTACACTGGGAAAGAACTCCGTATG
Found at i:96532 original size:26 final size:26
Alignment explanation
Indices: 96503--96554 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
96493 CGATCTGATA
*
96503 TTAGATTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
96529 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
96555 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:97848 original size:897 final size:893
Alignment explanation
Indices: 95747--100673 Score: 6121
Period size: 897 Copynumber: 5.5 Consensus size: 893
95737 TCAACCGGGT
* ** * * * *
95747 CCCCCTGCGTGCTGTCGGTCCTGCTGCTGCAACCCT-TGTCCGGTCTAATCTTAGACTAGGAATG
1 CCCCCTACGTGCTACCGATCCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG
* ** *
95811 AACTCCGTATGCCTAAGCCAACTGAC-AAA--A-CGAACGGGCGGGCACTACGTCGGCCAGCGAG
66 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAG
* * *
95872 GCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTA
131 GCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
* * *
95937 CCCTGCCAATGCCATTTTTACGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAG
196 CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAG
* ** ** *
96002 TTTCATGGCAAGCCGACTCGTTTTCTATTTTTCATAATTTTCAAAACTTTTTGCGGTTCGAGGAT
261 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GAT
* * * *
96067 TTTTTT-TAATATTTTCAGAAGG-GTTTCGGCCCCAAACTTGGCAGACATGATCCTTGTATTTTT
325 TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT
* * * *
96130 TTTCGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTCAAA
390 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAA
* * *
96195 AAAATGTCCCCATTTTAGACACTTGAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
455 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
*
96260 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACC
520 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * ***
96325 AGCACCCATCGCACATCATGTGCGCACACCCCCCACCCCCCAATCGTCGGAACCCCAATGTTACC
585 AGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGTCAGAACCCCAATGCCGCC
* * * *
96390 GGTCAGGTTTTCGTGGCGATGCTTCCG-TGATAGTTCCCCGGGC-AAAAAAAATGCGGCACCAGC
650 GGTCAGGTTCTC-CGGCGATGC-TCCGATGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGC
* ** * ** * * *
96453 ACATGCCCAAGCGTAGCATGTGCACCCGTAACCCTCGGTCCGATCTGATATTAGATTGGGAATGA
713 ACATGCCCGAGCCCAGCATGTGCACCCGCAACCC-CCATCCG-TCTGATCTTACACTGGGAATGA
* *
96518 ACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCA
776 ACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * *
96583 GGCGTTCAGCCGGCTAGAGGGGCAGGATGCGTAAGCCGGGGATCGGCTGGGTCC
841 GGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATC-GCTGGGTCC
* * * * * *
96637 CCCCCTACGTGCTGCCGATCTTGCTTCCGCAACCCTCAGTCCGAG-CTGATCTTATACTGGGAAT
1 CCCCCTACGTGCTACCGATCCTGCTGCTGCAACCCTCGGTCCG-GTCTGATCTTAGACTGGGAAT
* * * * *
96701 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGACGGGCACTATGCCAGCCAGAGA
65 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGA
* * * *
96766 GGAGGGATGTGCAAGCTGTGGATCGATAGGGTGGTAGGAGGGTTTAGGCACATCTTCATATTTCT
130 GGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
*
96831 GCCACGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTTAAGCCTTCATGTGA
195 GCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC-TTAAGCCTTCATGTGA
* * * *
96896 AGTTTCATGGCAAAATGACTCGTTTTCTATTTTTCACGATTTTTGAAAATTTTTACAGTTCGAGA
259 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGA
* * * *
96961 TTTTTTAAAAAATTTTTCAGAAGGAGTTTTGGTCCCACACTTGGTAGACATGATCCTTGTATTTT
324 TTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTT
* * * *
97026 TTTTGGCTTGCACAAAAAAATTCAGCTAAAAACACAAAGTGTACAAGATTTTGTGACCATTTGAA
389 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAA
* * * *
97091 AAAAATGTCCCTATTTCGGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCT
454 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * *
97156 CTTTAAGGGGGTGTGAGTTCTTGTGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAG
519 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * * * *
97221 CAGCACCCATCGCACATCATGTGCACACACCCCCTGCCCCCCAATCCTCAGAACCCAAACGCCGG
584 CAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGTCAGAACCCCAATGCCGC
* * * * * * *
97286 CAGTTAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCTGGCGAAAAAAAAATACGGCACTAGC
649 CGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGGGCG-AAAAAAAATGCGGCACCAGC
* * *
97351 GCATGCCCGAGCCCAGCATGTGCACCTGCAACCCCCATTCCAGTCTGATCTTTCACTGGGAATGA
713 ACATGCCCGAGCCCAGCATGTGCACCCGCAACCCCCA-TCC-GTCTGATCTTACACTGGGAATGA
** *
97416 ACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCG
776 ACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* *
97481 GGCGCTCAACCGGCCAGAGGGGTAGGATGCGCAAGCCGAGGATCAGCTGGGTCC
841 GGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATC-GCTGGGTCC
** * * * *
97535 CCCCCTGTGTGCTGCCGATCCTGCTGCTACAACCCTTGGTCCGGTCTGATCTTAGATTGGGAATG
1 CCCCCTACGTGCTACCGATCCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG
* * * * * * * * *
97600 AACTCCGTATACCGAAGCCAACCGATC-AAATGAGCGGGCGGGTGGACATTACGCCAGCAAGAGA
66 AACTCCGTATGCCTAAGCCAACCGA-CGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGA
* * **
97664 GGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTTGGTTTACACACATCTTCATATTTCT
130 GGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
97729 GCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
195 GCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
* *
97794 GTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAT
260 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGAT
* * * * * ** *
97859 TTTCTGAAAATTTTTTCGGAAGCAGTTTTGCCCCCAAACAAGGTAGACATGATCCTTATATTTTT
325 TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT
** *
97924 -TCTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAACGTACATGATTTTGTGACCATTTGAA
390 GT-TGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAA
* * * *
97988 AAAAGTGTCCCCATTTCAGACACTTCAGTGGCTACTGGCAGCAAACCTATAAAATCTCAATTGCT
454 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * * *
98053 TTTTAAGGGGGTGTGAGTTCTCCAAGTTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTAC
519 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
*
98118 CAGCACCCATCGCACATCATGTGCGCACACCCCCC-ACCCCCAAT--TACTAGAACCCCAATGCC
584 CAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGT-C-AGAACCCCAATGCC
* * * * * *
98180 GTCGGTCAGGTTCTCCGGTGATACTCCAACGATGGTGCCCCGGGCGAAAAAAAATGCGACACCAG
647 GCCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAG
* * * *** *
98245 CACATGCCCAAGCCCAGTATGTGCACCCGCATCCCTTGGTCTGATCTGATCTTACACTGGGAATG
712 CACATGCCCGAGCCCAGCATGTGCACCCGCAACCC-CCATCCG-TCTGATCTTACACTGGGAATG
* * *
98310 AACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCAAAGTCAACCCACGAAAGGAGAGTGC
775 AACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
** * * * * *
98375 GGGTACTCAGCCAGCCAGAGGGGTAGGATGCACAAGTCGAGGATCGATCGGGTCC
840 GGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGCT-GGGTCC
* * * * * * * * * *
98430 CCCCC-ACGTGCTATCAATCCTGTTGCTACAATCCTCGGTCTGAT-TCAATCTTACATTGGGAAT
1 CCCCCTACGTGCTACCGATCCTGCTGCTGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAAT
*
98493 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACTACGTCGGCCAGAGA
65 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGA
98558 GGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
130 GGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
** *
98623 TTCATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAG-C--C-T-T--A
195 GCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
* * *
98681 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA-GGATTTGGGA
260 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG-TTCGAGA
* * * * *
98745 TTTTTTTTTAAATTTTTTTAGAAGGAGTTTTGGCACCACACTTGGTAGACGTGATCCTTGTATTT
324 -TTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
* ** * *
98810 TTGTAGGCATGCACAAAAAAATTCAGCTAAAAACTTGAACTGTACAGGATTTTGGGACCATTTGA
388 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGA
** *
98875 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACCAGCAGCAAACCTATAAAATCTCAAATGC
453 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
98940 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
518 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * *
99005 CCAGCACCCATCACACATCATGTGCACACACCCCCTCCGCCCCCACAATCGTCGGAAACCCGAAT
583 CCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CCGCCCCC-CAATCGTCAG-AACCCCAAT
* * * * * *
99070 GCTGCCGGTCAGGTTCTCCGGTGTTGCTCCGATGATGGTGCCTCGGGTGAAAAACAATGCGGCAC
644 GCCGCCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGGGCGAAAAAAAATGCGGCAC
* *
99135 CAGCACATG-CCGAAGCCCAGCATGTGCACCCGCAACCCTCGATCCGGT-TCGATCTTACACTAG
709 CAGCACATGCCCG-AGCCCAGCATGTGCACCCGCAACCC-CCATCC-GTCT-GATCTTACACTGG
* * * *
99198 GAATGAACTCCGTATGGTTACACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGACACGAG
770 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAG
* ** * * *
99263 CGTGTGGGCATTCAGCCGACCAG-GTGGGCAGGAT--GC---CTG-GGATCGGC-CGGTCC
835 CGTGCGGGCGCTCAGCCGGCCAGAG-GGGCAGGATGCGCAAGCCGAGGATC-GCTGGGTCC
* * * * * * * * *
99316 ACCCTTGCGTGCTACCGATACTACTACTGCAACCCTTGGTCCAGTCTGATCTTAGACTTGGAATG
1 CCCCCTACGTGCTACCGATCCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG
* * * *
99381 AGCTCTGTATGCCTAAGCCAACCGATGAAACGATCGGGCGGGCGGGCACTACGTCGGCCAGAGAG
66 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAG
* * * * *
99446 GCGGGATGTGCAAACTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTTTG
131 GCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
* * *
99511 CCATGCCAATGCCATTTTTATGGCTAGTAAATTCATACAATGGTCCATTAAGCCTTCATGTGAAT
196 CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAG
* * * *
99576 TTTCATGGCAGGACGACTCGTTTTCTATTTTTCATGAGTTTTGAAACTTTTTACGATTC-AGGAT
261 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GAT
* * * * **
99640 TTTTTTAAAATTTTTTCAGCAGGGGTTTTGGCCCCACACTTGCTAGATGTGATCCTTGTATTTTT
325 TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT
* ** *
99705 GTTGGCATGCACAAAAAAATTCAGCTAAAAAATTGAAGTGTACAGGATTTTGTGACCATTTCAAA
390 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAA
* *
99770 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAGAATCTCAAATGCTC
455 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
*
99835 TTTAAGGGGGTGTGAGGTCTC-ATGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-
520 TTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
*
99898 CAGGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCTAATCGTC-GAAACCCCAATA
584 CA-GCACCCATCGCACATCATGTGCGCACA-CCCCCCGCCCCCC-AATCGTCAG-AACCCCAATG
* * * * * * *
99962 CCGTCGATCAGGTTCTCCGACGATGCTTCGACGATGGTGCCCCGGGC-AATAAAAAGTGAGGCAC
645 CCGCCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGGGCGAA-AAAAAATGCGGCAC
* *
100026 CAGCACATGTCCGAGCCCAACATGTGCACCCGCAA--CCCA--CG---G----T---CT--G---
709 CAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCCCATCCGTCTGATCTTACACTGGGAAT
* * * *** *
100072 G---TCCG-AT-CTTACATTGGGAATGAACTCTGTATG-CTTAG---A-CTGGGAAACGAACGTG
774 GAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * *
100127 TGGGCGCTCAGCCAGCCAGAGGGGCAGGATGCGTAAGCCGAGGATCGATCGGGTCC
839 CGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGCT-GGGTCC
* * * * ** * *
100183 CCCCCTACGTGTTACCGATCTTGCTGCTGCAACCATCAGTCTTGTCCGATCTTAGACTAGGAATG
1 CCCCCTACGTGCTACCGATCCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG
* * * * *
100248 AACTCCGTATGCCTAAGTCGACCGACGAAATGAGCGGGTGGGCGAGCACTACGTCGGCCAGAGAG
66 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAG
* * * *
100313 GTGGGATGCGCAAGCCGTGCATCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTTTG
131 GCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
100378 CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTCATGTGAA
196 CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC-TTCATGTG-A
* *
100443 AGTTTCATCGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAAC-TTTTACGG-TCGGG
259 AGTTTCAT-GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAG
* * * *
100506 ATTTTTTAAAAATTTTTTCAGATGGAGTTTTGGCCCCAAACTGGGTAGACGTGATCCTTGTATTT
323 ATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
*
100571 TTGTTGGCATGCAC-AAAAAATTCAGCTAAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG
388 TTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCAAAGTGTACAGGATTTTGTGACCATTTG
100635 AAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGG
452 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
Statistics
Matches: 3507, Mismatches: 461, Indels: 161
0.85 0.11 0.04
Matches are distributed among these distances:
860 35 0.01
861 2 0.00
862 1 0.00
864 4 0.00
865 26 0.01
866 7 0.00
867 267 0.08
868 123 0.04
869 15 0.00
870 38 0.01
873 1 0.00
875 2 0.00
878 1 0.00
882 1 0.00
885 1 0.00
886 11 0.00
887 271 0.08
888 262 0.07
889 7 0.00
890 36 0.01
891 143 0.04
892 35 0.01
893 469 0.13
894 271 0.08
895 315 0.09
896 159 0.05
897 619 0.18
898 383 0.11
899 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
CCCCCTACGTGCTACCGATCCTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG
AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAG
GCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAG
TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATT
TTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTG
TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAA
AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
GCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGTCAGAACCCCAATGCCGCCG
GTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACA
TGCCCGAGCCCAGCATGTGCACCCGCAACCCCCATCCGTCTGATCTTACACTGGGAATGAACTCC
GTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
TCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGCTGGGTCC
Found at i:98331 original size:26 final size:26
Alignment explanation
Indices: 98295--98347 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
98285 CTGATCTGAT
98295 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
98321 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
98347 C
1 C
98348 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:99218 original size:26 final size:26
Alignment explanation
Indices: 99189--99239 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
99179 CGGTTCGATC
99189 TTACACTAGGAATGAACTCCGTATGG
1 TTACACTAGGAATGAACTCCGTATGG
*
99215 TTACACTAGGAATGAACTCTGTATG
1 TTACACTAGGAATGAACTCCGTATG
99240 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
TTACACTAGGAATGAACTCCGTATGG
Done.