Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168494.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_91, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100055
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.42
File 2 of 3
Found at i:44572 original size:181 final size:181
Alignment explanation
Indices: 44230--45424 Score: 1004
Period size: 181 Copynumber: 6.7 Consensus size: 181
44220 ATTTAGTATA
* * * * * * *
44230 ATTTGAAATAAATAAATGTTCAAATTGTTATAACTAATTGAACTAGCA-T-GGTAAATAGATTTA
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT-G-ATTCGATAAACAGATTTA
* * * * * *
44293 TTTATTAAATCTCTTA-TTAATT---TTTGA-AATATTAGTAAATTAATATTATTTTATTTCGGA
64 TTTTTTAAATCTCTTACTT-ATTAAATTTTATAATATTAATAAATTAGTATTATTTTATTTTGAA
* * * * * *
44353 CAAACTTATATGAACAAAAACATTTGTTTTACGACAAAACAAAAGGTCATAACG
128 TAAGCTTGTATGAAGAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACG
* * * * * * * * * *
44407 ATTTGAAATAGATAACTATTCATATAGCCTTAACTATTTGAATTGGTTTGGTAAACAAATTTATT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGATAAACAGATTTATT
* * * * *
44472 TTTTAAATCTATTAGTTATTAAATTTCATAATATTACTAGATTAGTATTATTTTATTTTGAATAA
66 TTTTAAATCTCTTACTTATTAAATTTTATAATATTAATAAATTAGTATTATTTTATTTTGAATAA
* * * *
44537 GCTTGTATGAAGATAAATAATTATTTTATGACAAAACAAAAGGTTATAACG
131 GCTTGTATGAAGAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACG
*
44588 A-TTGAAAATATATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGATAAACAGATTTAT
1 ATTTG-AAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGATAAACAGATTTAT
* * *
44652 TTTTTAAATCTCCTACTTATTAATTTTTCA-AATATTAATAAATTAGTATTATTTCATTTTGAAT
65 TTTTTAAATCTCTTACTTATTAAATTTT-ATAATATTAATAAATTAGTATTATTTTATTTTGAAT
* * * * * *
44716 AGGCTTGTGTGATGAAAAACAATTGTTTTATGAAAAAACAAAAGTTCATAATG
129 AAGCTTGTATGAAGAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACG
* * * *
44769 ATTTGAAATAGATAATTGTTTAAATGGCCATAATTATTTGAACTGATTCGATAAACTA-ATTTAT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGATAAAC-AGATTTAT
* * * * * * *
44833 GTTTTAAATCTCTAACTTATCAATTTTTATAATATTAATAAAGTAATATTATTTTA-TTTCAGAT
65 TTTTTAAATCTCTTACTTATTAAATTTTATAATATTAATAAATTAGTATTATTTTATTTTGA-AT
* *** * * *
44897 AAGCTTTTATGAACTGAAACAATTGTTTTATGATAAAATATAAGGTCATAACG
129 AAGCTTGTATGAAGAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACG
* * * * * *
44950 ATTTTAAATAGATAATTGTTCAAATAGTAAAAAATATTTAAACTTG-TTCGATAAATAGATTT-T
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAC-TGATTCGATAAACAGATTTAT
* * * * * **
45013 TTTCT-AATTTCTTACTTAAT-AATTTTTTGAATGTTAATAAATTAGTATTATTTTATTTCAAAT
65 TTTTTAAATCTCTTACTTATTAAATTTTAT-AATATTAATAAATTAGTATTATTTTATTTTGAAT
* ** * ** * *
45076 AAGCATGTATG-AGTTGAAGCAATCATTTTATGACTAAA-AAAAGGTCAAAACG
129 AAGCTTGTATGAAG-AAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACG
* * * * * *
45128 ATTTGAAATAGATAGTTGTTCTAATAGTCTTAACTATTTGAATTGATTC-AGCAAACATATTTAT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGA-TAAACAGATTTAT
* * * * * * * * *
45192 TTTTTAAATC-CTTAGTTCTT-AATGTTTAGAATATTATTAATTTAGTAATATTTAACTCTGAAT
65 TTTTTAAATCTCTTACTTATTAAAT-TTTATAATATTAATAAATTAGTATTATTTTATTTTGAAT
* * * * * * *
45255 AAGCTTGT-TGAACAAAAATTAAATGTTTTAGGACAAAACAAAA-ATTATAACA
129 AAGCTTGTATGAAGAAAAA-CAATTGTTTTATGACAAAACAAAAGGTCATAACG
* * * * * * *
45307 ATTAGAGATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTTGGTAAAGAGATTTAGT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGATAAACAGATTTATT
* * *
45372 TTTTAAA--TC-T-CTTATT-AATTTTCAAAATAGTAATAAAATAGTATTATTTTATT
66 TTTTAAATCTCTTACTTATTAAATTTT-ATAATATTAATAAATTAGTATTATTTTATT
45425 CTAAATAATA
Statistics
Matches: 806, Mismatches: 183, Indels: 59
0.77 0.17 0.06
Matches are distributed among these distances:
175 3 0.00
176 31 0.04
177 67 0.08
178 71 0.09
179 188 0.23
180 30 0.04
181 409 0.51
182 7 0.01
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.41
Consensus pattern (181 bp):
ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGATAAACAGATTTATT
TTTTAAATCTCTTACTTATTAAATTTTATAATATTAATAAATTAGTATTATTTTATTTTGAATAA
GCTTGTATGAAGAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACG
Found at i:44928 original size:362 final size:356
Alignment explanation
Indices: 44235--45424 Score: 1143
Period size: 362 Copynumber: 3.3 Consensus size: 356
44225 GTATAATTTG
* * * * * * *
44235 AAATAAATAAATGTTCAAATTGTTATAACTAATTGAACTAGCA-T-GGTAAATAGATTTATTTAT
1 AAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT-G-ATTCGATAAATAGATTTATTTTT
* * * * * * *
44298 TAAATCTCTTATTAATTTTTGAAATATTAGTAAATTAATATTATTTTATTTCGGACAAACTTATA
64 TAAATCTCTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTA
** * * * * *
44363 TGAACAAAAACATTTGTTTTACGACAAAACAAAAGGTCATAACGATTTGAAATAGATAACTATTC
129 TGATGAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTT
* * * * *
44428 ATATAGCCTTAACTATTTGAATTGGTTTGGTAAACAAATTTATTTTTTAAATCTATTAGTTATTA
194 AAATAGCCTTAACTATTTGAATTGATTCGATAAAC-AATTTATTTTTTAAATCTCTTAGTTATTA
* * * * *
44493 AATTTCATAATATTACTAGATTAGTATTATTTTATTT-TGAATAAGCTTGTATGAAGATAAATAA
258 ATTTTTATAATATTAATAAATTAGTATTATTTTATTTCTGAATAAGCTTGTATGAA-CTAAATAA
*
44557 TTATTTTATGACAAAACAAAAGGTTATAACGATTGA
322 TTGTTTTATGACAAAACAAAAGGTTATAACGATT-A
* *
44593 AAATATATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGATAAACAGATTTATTTTTTA
1 AAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGATAAATAGATTTATTTTTTA
* * *
44658 AATCTCCTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTCATTTTGAATAGGCTTG
66 AA--T-CT-CTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTG
* * * *
44723 TGTGATGAAAAACAATTGTTTTATGAAAAAACAAAAGTTCATAATGATTTGAAATAGATAATTGT
127 TATGATGAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGT
* * * * * * *
44788 TTAAATGGCCATAATTATTTGAACTGATTCGATAAACTAATTTATGTTTTAAATCTCTAACTTAT
192 TTAAATAGCCTTAACTATTTGAATTGATTCGATAAAC-AATTTATTTTTTAAATCTCTTAGTTAT
* * * * * *
44853 CAATTTTTATAATATTAATAAAGTAATATTATTTTATTTCAG-ATAAGCTTTTATGAACTGAAAC
256 TAATTTTTATAATATTAATAAATTAGTATTATTTTATTTCTGAATAAGCTTGTATGAACT-AAAT
* * * * *
44917 AATTGTTTTATGATAAAATATAAGGTCATAACGATTTT
320 AATTGTTTTATGACAAAACAAAAGGTTATAACGA-TTA
* * * * *
44955 AAATAGATAATTGTTCAAATAGTAAAAAATATTTAAACTTG-TTCGATAAATAGATTT-TTTTCT
1 AAATAGATAATTGTTCAAATAGTCATAACTATTTGAAC-TGATTCGATAAATAGATTTATTTTTT
* * ** * * *
45018 AATTTCTTACTTAATAATTTTTTGAATGTTAATAAATTAGTATTATTTTATTTCAAATAAGCATG
65 AA-ATC-T-CTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTG
* ** * * *
45083 TATGAGTTG--AAGCAATCATTTTATGACTAAA-AAAAGGTCAAAACGATTTGAAATAGATAGTT
127 TATGA--TGAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATT
* *
45145 GTTCT-AATAGTCTTAACTATTTGAATTGATTC-AGCAAACATATTTATTTTTTAAATC-CTTAG
190 GTT-TAAATAGCCTTAACTATTTGAATTGATTCGA-TAAACA-ATTTATTTTTTAAATCTCTTAG
* * * * * * ** *
45207 TTCTTAATGTTTAGAATATTATTAATTTAGTAATA-TTTAACTCTGAATAAGCTTGT-TGAACAA
252 TTATTAATTTTTATAATATTAATAAATTAGTATTATTTTATTTCTGAATAAGCTTGTATGAAC-T
* * * *
45270 AAATTAAATGTTTTAGGACAAAACAAAA-ATTATAACAATTA
316 AAA-TAATTGTTTTATGACAAAACAAAAGGTTATAACGATTA
* * * * * *
45311 GAGATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTTGGTAAAGAGATTTAGTTTTT
1 -AAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGATAAATAGATTTATTTTTT
* *
45376 AAATCTCTTATTAA-TTTTCAAAATAGTAATAAAATAGTATTATTTTATT
65 AAATCTCTTATTAATTTTTC-AAATATTAATAAATTAGTATTATTTTATT
45425 CTAAATAATA
Statistics
Matches: 672, Mismatches: 136, Indels: 51
0.78 0.16 0.06
Matches are distributed among these distances:
354 4 0.01
355 32 0.05
356 6 0.01
357 72 0.11
358 118 0.18
359 72 0.11
360 73 0.11
361 10 0.01
362 280 0.42
363 5 0.01
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.41
Consensus pattern (356 bp):
AAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGATAAATAGATTTATTTTTTA
AATCTCTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATG
ATGAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTTAA
ATAGCCTTAACTATTTGAATTGATTCGATAAACAATTTATTTTTTAAATCTCTTAGTTATTAATT
TTTATAATATTAATAAATTAGTATTATTTTATTTCTGAATAAGCTTGTATGAACTAAATAATTGT
TTTATGACAAAACAAAAGGTTATAACGATTA
Found at i:45908 original size:178 final size:178
Alignment explanation
Indices: 45473--45945 Score: 544
Period size: 178 Copynumber: 2.6 Consensus size: 178
45463 TAATTTTTAA
* * * *
45473 ATAAA-TTTATTTTTAAAAT-TTTTACTTATTAATTTTTGAAACATTAATAAATTTATATTATTT
1 ATAAATTTTTTTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATTT
* * **
45536 TATTTGAAATAAGCTTGAATGAATAG-AACTAATTGTTTTATGACAAAATAAAAAGGTTGTAATG
66 TATTTCAAATAAGC-TAAATGAATAGAAAC-AATTGTTTTATGACAAAATAAAAAGGTTACAATG
* * *
45600 TTTTGAAATAGATAATTATTAAGATAGTCATAATTATTTGAACTTGTTCG
129 ATGTGAAATAGATAATTATTAAGATAGTCATAACTATTTGAACTTGTTCG
* * * * *
45650 ATAAATAACTTTATTTTTTTAATTCTCTTACTTTTTAATTTTTGGAATATTAATAAATTAGTATT
1 ATAAAT---TTT-TTTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAATATT
* * * *
45715 ATTTTATTTCAAATAAGCTAACATGAATTGAAACAATTGTTTTATTACAAAA-CAAAATGTTACA
62 ATTTTATTTCAAATAAGCTAA-ATGAATAGAAACAATTGTTTTATGACAAAATAAAAAGGTTACA
* *
45779 ATGATGTGAAGTAGATAATTATTCAA-ATAGTCATAACTATTTGAACTTGTTTG
126 ATGATGTGAAATAGATAATTATT-AAGATAGTCATAACTATTTGAACTTGTTCG
* * *
45832 GTAAATTTTTTTTTTTAAATCTTTTACTTATTAATTGTTGAAATATTAATAAATCAATATTATTT
1 ATAAATTTTTTTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATTT
* * ** *
45897 TAATCCAAATAAGCTTGTATAGAA-GGAAACAATTGTTTTATGACAAAAT
66 TATTTCAAATAAGC-TAAAT-GAATAGAAACAATTGTTTTATGACAAAAT
45946 TTTGTTCGAT
Statistics
Matches: 248, Mismatches: 36, Indels: 22
0.81 0.12 0.07
Matches are distributed among these distances:
177 5 0.02
178 85 0.34
179 7 0.03
181 3 0.01
182 68 0.27
183 77 0.31
184 3 0.01
ACGTcount: A:0.39, C:0.07, G:0.10, T:0.44
Consensus pattern (178 bp):
ATAAATTTTTTTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATTT
TATTTCAAATAAGCTAAATGAATAGAAACAATTGTTTTATGACAAAATAAAAAGGTTACAATGAT
GTGAAATAGATAATTATTAAGATAGTCATAACTATTTGAACTTGTTCG
Found at i:46064 original size:125 final size:125
Alignment explanation
Indices: 45842--46068 Score: 296
Period size: 125 Copynumber: 1.8 Consensus size: 125
45832 GTAAATTTTT
45842 TTTTTTAAATCTTTTACTTATTAATTGTTGAAATATTAATAAATCAATATTATTTTAATCCAAAT
1 TTTTTTAAATCTTTTACTTATTAATTGTTGAAATATTAATAAATCAATATTATTTTAATCCAAAT
* ** * ** *
45907 AAGCTTGTATAGAAGGAAACAATTGTTTTATGACAAAATTTTGTTCGATAAATAGATTTA
66 AAGCTTATATAGAACAAAAAAATCATTATATGACAAAATTTTGTTCGATAAATAGATTTA
* *** * * *
45967 TTTTTTAAATCTTTTACTTATTAATTGTCT-TAATATTAATAAATTTGTATTATTTTATTCGAAG
1 TTTTTTAAATCTTTTACTTATTAATTGT-TGAAATATTAATAAATCAATATTATTTTAATCCAAA
46031 TAAGCTTATAT-GAACAAATAAAATCATTATATGACAAA
65 TAAGCTTATATAGAACAAA-AAAATCATTATATGACAAA
46069 CCAAAAGGTT
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
124 5 0.06
125 80 0.93
126 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.08, T:0.45
Consensus pattern (125 bp):
TTTTTTAAATCTTTTACTTATTAATTGTTGAAATATTAATAAATCAATATTATTTTAATCCAAAT
AAGCTTATATAGAACAAAAAAATCATTATATGACAAAATTTTGTTCGATAAATAGATTTA
Found at i:46336 original size:19 final size:19
Alignment explanation
Indices: 46302--46351 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
46292 AAAATTAAAC
* *
46302 AATATAATATTTTTATTAT
1 AATATTATAATTTTATTAT
*
46321 AATTTTATAATTTTATTAT
1 AATATTATAATTTTATTAT
46340 AATATTATAATT
1 AATATTATAATT
46352 ATAATAGAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
AATATTATAATTTTATTAT
Found at i:48603 original size:21 final size:21
Alignment explanation
Indices: 48570--48610 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
48560 ATGAATTAGC
* * *
48570 CATAGAATTTAAGAACATGAA
1 CATAAAATATAAGAAAATGAA
48591 CATAAAATATAAGAAAATGA
1 CATAAAATATAAGAAAATGA
48611 TCTCTAAGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.59, C:0.07, G:0.12, T:0.22
Consensus pattern (21 bp):
CATAAAATATAAGAAAATGAA
Found at i:50748 original size:58 final size:57
Alignment explanation
Indices: 50658--50770 Score: 208
Period size: 58 Copynumber: 2.0 Consensus size: 57
50648 TCTTGTGTGG
50658 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTGGAAATTTATTTTTAA
*
50716 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTT
50771 GAAACTTTGA
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
57 20 0.37
58 34 0.63
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.46
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTAA
Found at i:50850 original size:60 final size:61
Alignment explanation
Indices: 50766--50944 Score: 263
Period size: 64 Copynumber: 2.9 Consensus size: 61
50756 TGGAAATTTA
* ** *
50766 TTTTTGAAACTTTGATTTCCAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATCC-CTT
1 TTTTTGAAAATTT-ATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCTCTT
*
50827 TTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTT
1 TTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCC---TCTT
50891 TTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCC-CAAAAAT
1 TTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAAT
50945 ATTTTTCTGA
Statistics
Matches: 109, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
60 41 0.38
61 12 0.11
63 7 0.06
64 49 0.45
ACGTcount: A:0.33, C:0.14, G:0.07, T:0.46
Consensus pattern (61 bp):
TTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCTCTT
Found at i:50857 original size:132 final size:122
Alignment explanation
Indices: 50658--50963 Score: 411
Period size: 132 Copynumber: 2.5 Consensus size: 122
50648 TCTTGTGTGG
*
50658 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTATTTTTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAAGGAAAAT
** *
50723 TGATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTTTGAAACTTTGATTTCCAA
66 TGATACTTTCAACTTTTCCTCAAAAAT-CCTTTT-----TTT-TTTTTGAAAATTT-ATTTCCAA
** *
50788 GGAAAATTGATACTTTCAACTTTTCCTTAAAAATCCCTTTTTTTGAAAATTTATTTTTAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAT--ATTTTTTTGAAAATTTATTTTTAAGGAAA
**
50853 ATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTTTTTTGAAAATTTATTTTTAA
64 ATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTTTTTTGAAAATTTATTTCCAA
*
50912 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTCTG--AATTTATTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTT
50964 AAGAAGACAA
Statistics
Matches: 161, Mismatches: 13, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
119 10 0.06
121 7 0.04
123 7 0.04
124 30 0.19
125 12 0.07
126 3 0.02
130 32 0.20
131 4 0.02
132 56 0.35
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (122 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAAGGAAAAT
TGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTTTTTTGAAAATTTATTTCCAA
Found at i:50999 original size:12 final size:12
Alignment explanation
Indices: 50982--51044 Score: 76
Period size: 12 Copynumber: 5.3 Consensus size: 12
50972 AAAAAAATAA
50982 AAAAATAAGAAT
1 AAAAATAAGAAT
50994 AAAAATAAGAAT
1 AAAAATAAGAAT
*
51006 AAAAATAAAAAT
1 AAAAATAAGAAT
*
51018 AAAGATAA-AGAT
1 AAAAATAAGA-AT
*
51030 AAAAAT-GGAAT
1 AAAAATAAGAAT
51041 AAAA
1 AAAA
51045 TAAAAAAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
11 7 0.16
12 38 0.84
ACGTcount: A:0.75, C:0.00, G:0.10, T:0.16
Consensus pattern (12 bp):
AAAAATAAGAAT
Found at i:51012 original size:18 final size:18
Alignment explanation
Indices: 50985--51050 Score: 75
Period size: 18 Copynumber: 3.8 Consensus size: 18
50975 AAAATAAAAA
*
50985 AATAAGAATAAAAATAAG
1 AATAAAAATAAAAATAAG
51003 AATAAAAATAAAAATAA-
1 AATAAAAATAAAAATAAG
* *
51020 AGATAAAGATAAAAAT-GG
1 A-ATAAAAATAAAAATAAG
51038 AAT-AAAATAAAAA
1 AATAAAAATAAAAA
51051 AGTACTAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
16 9 0.21
17 3 0.07
18 30 0.71
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.17
Consensus pattern (18 bp):
AATAAAAATAAAAATAAG
Found at i:51050 original size:6 final size:6
Alignment explanation
Indices: 50982--51035 Score: 72
Period size: 6 Copynumber: 9.0 Consensus size: 6
50972 AAAAAAATAA
* * * *
50982 AAAAAT AAGAAT AAAAAT AAGAAT AAAAAT AAAAAT AAAGAT AAAGAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
51030 AAAAAT
1 AAAAAT
51036 GGAATAAAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:52980 original size:22 final size:20
Alignment explanation
Indices: 52947--52998 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 20
52937 TTCTTTTTTT
52947 TAAAAAAAAT-AATCA-GATAA
1 TAAAAAAAATAAAT-ATGA-AA
52967 TAAAAAAATGATAAATATGAAA
1 TAAAAAAA--ATAAATATGAAA
52989 TAAAAAAAAT
1 TAAAAAAAAT
52999 CTAAAATAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
20 10 0.36
22 13 0.46
23 5 0.18
ACGTcount: A:0.71, C:0.02, G:0.06, T:0.21
Consensus pattern (20 bp):
TAAAAAAAATAAATATGAAA
Found at i:58902 original size:29 final size:26
Alignment explanation
Indices: 58855--58915 Score: 77
Period size: 29 Copynumber: 2.2 Consensus size: 26
58845 ATTATCTATC
* *
58855 ATATTTATTATAAATTTATATATATT
1 ATATTTATTATAAATTTATAAAAATT
58881 ATATTTATTATAATATAATTATAAAAATT
1 ATATTTATTATAA-AT--TTATAAAAATT
58910 ATATTT
1 ATATTT
58916 TATAATCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
26 13 0.43
27 2 0.07
29 15 0.50
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (26 bp):
ATATTTATTATAAATTTATAAAAATT
Found at i:59081 original size:21 final size:19
Alignment explanation
Indices: 59049--59090 Score: 57
Period size: 21 Copynumber: 2.1 Consensus size: 19
59039 TAAATATTAT
*
59049 TAAATTATAATTATAATAA
1 TAAATTATAATTATAAAAA
59068 TAAATTGATAAATTATAAAAA
1 TAAATT-AT-AATTATAAAAA
59089 TA
1 TA
59091 TTATTTATCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 12 0.60
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
TAAATTATAATTATAAAAA
Found at i:59216 original size:23 final size:23
Alignment explanation
Indices: 59170--59223 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
59160 ACTATGTTAA
* * **
59170 TAAATTATTTTAGTTTATGTATT
1 TAAATTATTATAATTTATCAATT
59193 TAAATTATTATAATTTATCAATT
1 TAAATTATTATAATTTATCAATT
59216 TAATATTA
1 TAA-ATTA
59224 AACAATATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
23 22 0.85
24 4 0.15
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.56
Consensus pattern (23 bp):
TAAATTATTATAATTTATCAATT
Found at i:59241 original size:34 final size:34
Alignment explanation
Indices: 59195--59273 Score: 101
Period size: 34 Copynumber: 2.4 Consensus size: 34
59185 TATGTATTTA
59195 AATT-ATTATAATTT-ATCAATTTAATATTAAA-C
1 AATTAATTATAATTTAAT-AATTTAATATTAAATC
* *
59227 AATATAATTATAATTTAATAATTTATTATTAAATT
1 AAT-TAATTATAATTTAATAATTTAATATTAAATC
59262 AATTAATTATAA
1 AATTAATTATAA
59274 AATTAGTATA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
32 3 0.07
33 1 0.02
34 32 0.78
35 5 0.12
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (34 bp):
AATTAATTATAATTTAATAATTTAATATTAAATC
Found at i:59264 original size:16 final size:16
Alignment explanation
Indices: 59245--59308 Score: 58
Period size: 16 Copynumber: 4.0 Consensus size: 16
59235 TATAATTTAA
59245 TAATTTATTATTAAAT
1 TAATTTATTATTAAAT
* *
59261 TAATTAATTATAAAAT
1 TAATTTATTATTAAAT
* * *
59277 TAGTATATTAATT-GAT
1 TAATTTATT-ATTAAAT
*
59293 TAATTTAATATTAAAT
1 TAATTTATTATTAAAT
59309 CTATTTTGAT
Statistics
Matches: 35, Mismatches: 11, Indels: 4
0.70 0.22 0.08
Matches are distributed among these distances:
15 3 0.09
16 30 0.86
17 2 0.06
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (16 bp):
TAATTTATTATTAAAT
Found at i:59520 original size:26 final size:26
Alignment explanation
Indices: 59465--59528 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 26
59455 AGATTTAAAA
59465 AATAAATCTATTTAATTTATAATCTCT
1 AATAAAT-TATTTAATTTATAATCTCT
* * *
59492 AATTAATTATTTAATTATTTAAT-TTT
1 AATAAATTATTTAATT-TATAATCTCT
59518 AATAAATTATT
1 AATAAATTATT
59529 GCTATAAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
26 21 0.66
27 11 0.34
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (26 bp):
AATAAATTATTTAATTTATAATCTCT
Found at i:59821 original size:16 final size:16
Alignment explanation
Indices: 59789--59836 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
59779 TATTGTTAAT
*
59789 ATTATTATTA-ATTTA
1 ATTAATATTATATTTA
*
59804 ATTTAA-ATTATTTTTA
1 A-TTAATATTATATTTA
59820 ATTAATATTATATTTA
1 ATTAATATTATATTTA
59836 A
1 A
59837 ATTTTGAATG
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
15 9 0.33
16 18 0.67
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
ATTAATATTATATTTA
Found at i:60250 original size:15 final size:15
Alignment explanation
Indices: 60230--60262 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
60220 TAAAATTTAA
60230 AATATT-TAAAATATT
1 AATATTGTAAAA-ATT
60245 AATATTGTAAAAATT
1 AATATTGTAAAAATT
60260 AAT
1 AAT
60263 CAAAGATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (15 bp):
AATATTGTAAAAATT
Found at i:60337 original size:16 final size:17
Alignment explanation
Indices: 60306--60338 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
60296 ATATTAAAAC
60306 AAATAATGATTTGAAAT
1 AAATAATGATTTGAAAT
*
60323 AAATAATTA-TTGAAAT
1 AAATAATGATTTGAAAT
60339 TGTAAAAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (17 bp):
AAATAATGATTTGAAAT
Found at i:63104 original size:26 final size:27
Alignment explanation
Indices: 63070--63161 Score: 84
Period size: 26 Copynumber: 3.5 Consensus size: 27
63060 TAATTCAAAT
63070 ATTATATATTAATTA-TATTAATAACTA
1 ATTA-ATATTAATTACTATTAATAACTA
* * *
63097 ATTAATATTAATTATTATAAATAAATA
1 ATTAATATTAATTACTATTAATAACTA
* * *
63124 TTATAATGTTAGTTACTA-T-ATAACTA
1 AT-TAATATTAATTACTATTAATAACTA
63150 ATTAATA-TAATT
1 ATTAATATTAATT
63162 TCAAACTGTT
Statistics
Matches: 52, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
24 4 0.08
25 4 0.08
26 17 0.33
27 15 0.29
28 12 0.23
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (27 bp):
ATTAATATTAATTACTATTAATAACTA
Found at i:64366 original size:42 final size:40
Alignment explanation
Indices: 64318--64421 Score: 101
Period size: 38 Copynumber: 2.6 Consensus size: 40
64308 TAATAGTGAA
*
64318 TTATATTAAATTATTATTAATAATAATAGCTTATTATTAATT
1 TTATATTAAATTATTATTAATAATAATAG-ATATTATT-ATT
* * *
64360 TTATATTTAA-TAAT-TTAAT-ATAATTGATATTATTATT
1 TTATATTAAATTATTATTAATAATAATAGATATTATTATT
64397 TGTA-ATTAAATTATTAATTAA-AATA
1 T-TATATTAAATTATT-ATTAATAATA
64422 CTATTAATTA
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
37 9 0.18
38 12 0.24
39 6 0.12
40 12 0.24
41 3 0.06
42 9 0.18
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (40 bp):
TTATATTAAATTATTATTAATAATAATAGATATTATTATT
Found at i:64901 original size:47 final size:47
Alignment explanation
Indices: 64815--64910 Score: 108
Period size: 47 Copynumber: 2.0 Consensus size: 47
64805 TTTATTATTT
*
64815 TATTATTAATAATTATATTAATTTACTTCATATATTAATAT-TAATAA
1 TATTATTAATAATTATATTAATTTACTTCATATAATAATATATAA-AA
* * *
64862 TATTATTAATAGTTA-ATTAGATATTAGTTTA-ATAATAATATATAAAA
1 TATTATTAATAATTATATTA-AT-TTACTTCATATAATAATATATAAAA
64909 TA
1 TA
64911 ATTAGTTTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
46 4 0.10
47 29 0.69
48 9 0.21
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (47 bp):
TATTATTAATAATTATATTAATTTACTTCATATAATAATATATAAAA
Found at i:64916 original size:27 final size:27
Alignment explanation
Indices: 64884--64951 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
64874 TTAATTAGAT
64884 ATTAGTTTAATAATAAT-ATATAAAATA
1 ATTAGTTT-ATAATAATAATATAAAATA
* * *
64911 ATTAGTTTATAACATTAATATAATATA
1 ATTAGTTTATAATAATAATATAAAATA
*
64938 ATTAATTTTATAAT
1 ATT-AGTTTATAAT
64952 TAATTAACTA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
26 6 0.18
27 20 0.59
28 8 0.24
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.46
Consensus pattern (27 bp):
ATTAGTTTATAATAATAATATAAAATA
Found at i:65401 original size:14 final size:14
Alignment explanation
Indices: 65382--65408 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
65372 ATAATTATTA
65382 ATTACTTATAATTT
1 ATTACTTATAATTT
65396 ATTACTTATAATT
1 ATTACTTATAATT
65409 ATAATATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (14 bp):
ATTACTTATAATTT
Found at i:65461 original size:36 final size:38
Alignment explanation
Indices: 65419--65509 Score: 100
Period size: 36 Copynumber: 2.5 Consensus size: 38
65409 ATAATATAAA
* *
65419 TATATTAATAATATTATTATTAGA-TAATTAAAC-TGT
1 TATATTAATAATATTATTATTAAATTAATTAAACTTCT
* * *
65455 TATATTAATAAT-TAATTTTTAAATTAATTATACTTCT
1 TATATTAATAATATTATTATTAAATTAATTAAACTTCT
*
65492 TAT-TTAATTATATTATTA
1 TATATTAATAATATTATTA
65510 ATTTAATAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
35 8 0.18
36 27 0.61
37 9 0.20
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (38 bp):
TATATTAATAATATTATTATTAAATTAATTAAACTTCT
Found at i:65500 original size:17 final size:17
Alignment explanation
Indices: 65463--65516 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
65453 GTTATATTAA
* *
65463 TAATTA-ATTTTTAAAT
1 TAATTATATTATTAATT
*
65479 TAATTATACTTCTT-ATT
1 TAATTATA-TTATTAATT
65496 TAATTATATTATTAATT
1 TAATTATATTATTAATT
65513 TAAT
1 TAAT
65517 AAATAAATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
16 10 0.31
17 18 0.56
18 4 0.12
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (17 bp):
TAATTATATTATTAATT
Found at i:65599 original size:21 final size:22
Alignment explanation
Indices: 65575--65625 Score: 61
Period size: 24 Copynumber: 2.3 Consensus size: 22
65565 TTGTTTTGTC
65575 ATAAA-AAT-TTATATTAATTAA
1 ATAAATAATATTATATTAATT-A
*
65596 ATAAAATAATATTATATTTATTA
1 AT-AAATAATATTATATTAATTA
65619 ATAAATA
1 ATAAATA
65626 TTGTTTCATA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 2 0.08
22 8 0.31
23 6 0.23
24 10 0.38
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
ATAAATAATATTATATTAATTA
Found at i:65762 original size:22 final size:20
Alignment explanation
Indices: 65736--65778 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
65726 ATTTAACTTC
*
65736 ATTAATTCAATGATATATTATA
1 ATTAATT-AAT-ATAAATTATA
65758 ATTAATTAATATAAATTATA
1 ATTAATTAATATAAATTATA
65778 A
1 A
65779 CAATTGGTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 3 0.15
22 7 0.35
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (20 bp):
ATTAATTAATATAAATTATA
Found at i:66780 original size:175 final size:176
Alignment explanation
Indices: 66394--66791 Score: 430
Period size: 175 Copynumber: 2.3 Consensus size: 176
66384 AATAATACTA
* * * * *
66394 ATTTTATTCCAAATAAGCTTGTATGAACTGAAATAATTGTTTTATGACTAAATAAAAGGATATAA
1 ATTTTAATCCGAATAAGCTTGTATGAACAGAAACAATTGTTTTATGACAAAATAAAAGGATATAA
* *** * * *
66459 TGATTTGAAATAGATAATTATTTTGATAGTCTTAACTATTTGAGCTAGTTCGGCTAACATATTTA
66 TGATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTAGTTCAGCTAACATATTTA
* * * * **
66524 TTTTTAAATCTCTTATTAATTTTTGAAATATTATTAAATTAGTATC
131 GTTTTAAATCTCTTATTAATTTTTAAAATATTAATAAATAAAAATC
* * *
66570 ATTTTAATCCGAATAAGCTTATATGAA-AGGAAACAATTGTTGTATGACAAAAT-AAA-GTTCAT
1 ATTTTAATCCGAATAAGCTTGTATGAACA-GAAACAATTGTTTTATGACAAAATAAAAGGAT-AT
* * * * *
66632 TATGATTTGAGATAAATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTTAG-TAA-ATAGA
64 AATGATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTAGTTCAGCTAACAT--A
*
66695 TTTAGTTTTAAATCTCTTATTAATTTTTAAAATATTAATAAATAAAAATT
127 TTTAGTTTTAAATCTCTTATTAATTTTTAAAATATTAATAAATAAAAATC
* ** *
66745 ATTTTATTTTGAATAA-TTCTGTATGAACAGAAACAATTGTTTTATGA
1 ATTTTAATCCGAATAAGCT-TGTATGAACAGAAACAATTGTTTTATGA
66792 TAAATTATTA
Statistics
Matches: 183, Mismatches: 33, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
173 2 0.01
174 6 0.03
175 129 0.70
176 46 0.25
ACGTcount: A:0.39, C:0.07, G:0.12, T:0.42
Consensus pattern (176 bp):
ATTTTAATCCGAATAAGCTTGTATGAACAGAAACAATTGTTTTATGACAAAATAAAAGGATATAA
TGATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTAGTTCAGCTAACATATTTA
GTTTTAAATCTCTTATTAATTTTTAAAATATTAATAAATAAAAATC
Found at i:66916 original size:37 final size:37
Alignment explanation
Indices: 66827--66926 Score: 92
Period size: 37 Copynumber: 2.9 Consensus size: 37
66817 ATTAAATTAA
66827 ATATTTAA-TAATAA-A-ATT--TTCTTATT-ATTATG
1 ATATTTAATTAATAATATATTAATTCTT-TTAATTATG
* *
66859 CTA-TTAATTAAT--TATCTTAATTCTTTTAATTATG
1 ATATTTAATTAATAATATATTAATTCTTTTAATTATG
**
66893 ATATTTAATTAATAATATATTAATAATTTTAATT
1 ATATTTAATTAATAATATATTAATTCTTTTAATT
66927 TAATTAAATA
Statistics
Matches: 53, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
31 5 0.09
32 8 0.15
33 2 0.04
34 13 0.25
35 9 0.17
37 16 0.30
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.54
Consensus pattern (37 bp):
ATATTTAATTAATAATATATTAATTCTTTTAATTATG
Found at i:66919 original size:14 final size:14
Alignment explanation
Indices: 66883--66948 Score: 52
Period size: 11 Copynumber: 4.8 Consensus size: 14
66873 TCTTAATTCT
*
66883 TTTAATT-ATGATA
1 TTTAATTAATAATA
66896 TTTAATTAATAATA
1 TTTAATTAATAATA
66910 --T-ATTAATAAT-
1 TTTAATTAATAATA
66920 TTTAATTTAATTAAATA
1 TTTAA-TTAA-T-AATA
66937 TTTATATTAATA
1 TTTA-ATTAATA
66949 TTTAAATGTT
Statistics
Matches: 43, Mismatches: 1, Indels: 16
0.72 0.02 0.27
Matches are distributed among these distances:
11 9 0.21
12 2 0.05
13 8 0.19
14 9 0.21
15 2 0.05
16 4 0.09
17 8 0.19
18 1 0.02
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (14 bp):
TTTAATTAATAATA
Found at i:66955 original size:20 final size:20
Alignment explanation
Indices: 66930--66992 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
66920 TTTAATTTAA
*
66930 TTAAATATTTATATTAATAT
1 TTAAATATTAATATTAATAT
*
66950 TTAAATGTTAATA-TAA-A-
1 TTAAATATTAATATTAATAT
*
66967 TT-AATATTAATATTATTAAT
1 TTAAATATTAATATTAAT-AT
66987 TTAAAT
1 TTAAAT
66993 TAATTTATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
16 9 0.26
17 4 0.12
18 1 0.03
19 4 0.12
20 13 0.38
21 3 0.09
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (20 bp):
TTAAATATTAATATTAATAT
Found at i:66976 original size:30 final size:30
Alignment explanation
Indices: 66895--66995 Score: 93
Period size: 30 Copynumber: 3.3 Consensus size: 30
66885 TAATTATGAT
* *
66895 ATTTAATT-AATAAT-ATATTAATAATTTTA
1 ATTTAATTAAATATTAATATTAAT-ATTTAA
*
66924 ATTTAATTAAATATTTATATTAATATTTAA
1 ATTTAATTAAATATTAATATTAATATTTAA
*
66954 ATGTTAA-TATAA-ATTAATATTAATATTATTA
1 AT-TTAATTA-AATATTAATATTAATATT-TAA
66985 ATTTAAATTAA
1 ATTT-AATTAA
66996 TTTATAATAA
Statistics
Matches: 61, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
29 8 0.13
30 30 0.49
31 21 0.34
32 2 0.03
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (30 bp):
ATTTAATTAAATATTAATATTAATATTTAA
Found at i:66977 original size:6 final size:6
Alignment explanation
Indices: 66916--66981 Score: 50
Period size: 6 Copynumber: 11.3 Consensus size: 6
66906 AATATATTAA
* * * *
66916 TAATTT TAAT-T TAAT-T AAATAT TTATAT TAATATT TAAATGT TAATA-
1 TAATAT TAATAT TAATAT TAATAT TAATAT TAATA-T T-AATAT TAATAT
66963 TAA-AT TAATAT TAATAT TA
1 TAATAT TAATAT TAATAT TA
66982 TTAATTTAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
4 1 0.02
5 15 0.31
6 26 0.53
7 4 0.08
8 3 0.06
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (6 bp):
TAATAT
Found at i:67009 original size:25 final size:25
Alignment explanation
Indices: 66957--67014 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
66947 TATTTAAATG
*
66957 TTAATATAAATTAATATTAATATTA
1 TTAATATAAATTAATATTAATATAA
* *
66982 TTAATTTAAATTAATTTATAATA-AA
1 TTAATATAAATTAATAT-TAATATAA
67007 TTATATAT
1 TTA-ATAT
67015 TTGTTTAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 19 0.70
26 8 0.30
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (25 bp):
TTAATATAAATTAATATTAATATAA
Found at i:67357 original size:22 final size:22
Alignment explanation
Indices: 67314--67358 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
67304 TATTTGTAGT
* *
67314 TAATATTTATTAATCATGATTA
1 TAATATTTATAAATCATAATTA
67336 TAATAATTTATAAAT-ATAATTA
1 TAAT-ATTTATAAATCATAATTA
67358 T
1 T
67359 TAAATATAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (22 bp):
TAATATTTATAAATCATAATTA
Found at i:67751 original size:15 final size:15
Alignment explanation
Indices: 67731--67777 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
67721 AAACTCAATT
*
67731 TATAATATTTAAATA
1 TATAATAATTAAATA
*
67746 TATAATAATTATATA
1 TATAATAATTAAATA
*
67761 TATAATTATTATAATA
1 TATAATAATTA-AATA
67777 T
1 T
67778 CTTATAACAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
15 23 0.85
16 4 0.15
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
TATAATAATTAAATA
Found at i:68048 original size:21 final size:22
Alignment explanation
Indices: 68000--68050 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
67990 ATCTGTTCAA
68000 ATAATTA-ATTTATTATAACTT
1 ATAATTATATTTATTATAACTT
*
68021 ATTATTATATTATATT-TAAC-T
1 ATAATTATATT-TATTATAACTT
68042 ATAATTATA
1 ATAATTATA
68051 ATTAAAGTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 15 0.58
22 7 0.27
23 4 0.15
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (22 bp):
ATAATTATATTTATTATAACTT
Found at i:68162 original size:25 final size:24
Alignment explanation
Indices: 68121--68176 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
68111 AGATCTAGTA
68121 ATAATAA-GTAATATATTATCAAATT
1 ATAATAATGTAATATATTAT-AAA-T
* *
68146 ATAATAATTTAAT-TATTATATAT
1 ATAATAATGTAATATATTATAAAT
68169 ATAATAAT
1 ATAATAAT
68177 AAGAACGATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 9 0.32
24 2 0.07
25 13 0.46
26 4 0.14
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (24 bp):
ATAATAATGTAATATATTATAAAT
Found at i:68302 original size:15 final size:15
Alignment explanation
Indices: 68261--68318 Score: 55
Period size: 15 Copynumber: 3.8 Consensus size: 15
68251 AATATTAATA
* *
68261 AATTATTTATTAATT
1 AATTATATATAAATT
*
68276 AATAAT-TAATAAATT
1 AATTATAT-ATAAATT
*
68291 AATTATATATAATTT
1 AATTATATATAAATT
68306 AATTTATATATAA
1 AA-TTATATATAA
68319 TTATTGGTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
14 1 0.03
15 24 0.67
16 11 0.31
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
AATTATATATAAATT
Found at i:68314 original size:16 final size:15
Alignment explanation
Indices: 68284--68320 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
68274 TTAATAATTA
*
68284 ATAAATTAATTATAT
1 ATAATTTAATTATAT
68299 ATAATTTAATTTATAT
1 ATAATTTAA-TTATAT
68315 ATAATT
1 ATAATT
68321 ATTGGTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
ATAATTTAATTATAT
Found at i:68416 original size:17 final size:18
Alignment explanation
Indices: 68385--68431 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
68375 AAATATAACT
*
68385 ATAATAAATTTAATAATA
1 ATAATAAATTAAATAATA
*
68403 ATAA-AAATTAAATATTA
1 ATAATAAATTAAATAATA
68420 AT-ATATAATTAA
1 ATAATA-AATTAA
68432 TTTATATGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
16 1 0.04
17 14 0.56
18 10 0.40
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
ATAATAAATTAAATAATA
Found at i:68504 original size:22 final size:22
Alignment explanation
Indices: 68456--68576 Score: 92
Period size: 22 Copynumber: 5.4 Consensus size: 22
68446 TGTAAAATAA
68456 ATATTATTATATATTAATAATT
1 ATATTATTATATATTAATAATT
68478 ATATTATTAT-TA-TAATTAATT
1 ATATTATTATATATTAA-TAATT
*
68499 AGTATTATTTATAAATT-ATAA-T
1 A-TATTA-TTATATATTAATAATT
*
68521 ATTTTAATTTATATATTAATAATT
1 ATATT-A-TTATATATTAATAATT
*
68545 -TATTATATAATAAATATAATTAA-T
1 ATATTAT-T-ATATAT-TAA-TAATT
68569 ATATTATT
1 ATATTATT
68577 GTAACTATTA
Statistics
Matches: 81, Mismatches: 5, Indels: 24
0.74 0.05 0.22
Matches are distributed among these distances:
20 3 0.04
21 12 0.15
22 29 0.36
23 19 0.23
24 8 0.10
25 10 0.12
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (22 bp):
ATATTATTATATATTAATAATT
Found at i:68630 original size:17 final size:17
Alignment explanation
Indices: 68608--68640 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
68598 AAAATTAATT
*
68608 ATAATTAAATATTTATC
1 ATAATTAAATACTTATC
68625 ATAATTAAATACTTAT
1 ATAATTAAATACTTAT
68641 TTAATTGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (17 bp):
ATAATTAAATACTTATC
Found at i:68683 original size:14 final size:14
Alignment explanation
Indices: 68642--68879 Score: 86
Period size: 13 Copynumber: 17.6 Consensus size: 14
68632 AATACTTATT
*
68642 TAATTGATATTAATA
1 TAATT-ATAATAATA
* *
68657 T-ATCATTATAATA
1 TAATTATAATAATA
*
68670 TATTTATAATAATA
1 TAATTATAATAATA
68684 TAATTAT-A-AATA
1 TAATTATAATAATA
68696 TAATTA-AAT-ATA
1 TAATTATAATAATA
* *
68708 GTATTTA-AACAATAA
1 -TAATTATAATAAT-A
*
68723 TTAATTATAAATATTA
1 -TAATTAT-AATAATA
* *
68739 TTATTA-AATATTTA
1 TAATTATAATA-ATA
68753 TTAATTATAA-AACTA
1 -TAATTATAATAA-TA
*
68768 T-ATTATAACTTATA
1 TAATTATAA-TAATA
*
68782 TAAAT-TAATAAATA
1 TAATTATAAT-AATA
68796 TAA-TA-AATAA-A
1 TAATTATAATAATA
* *
68807 TATTTATAATGAT-
1 TAATTATAATAATA
*
68820 TAA--ATAATATTTA
1 TAATTATAATA-ATA
68833 TAATTATAATAA-A
1 TAATTATAATAATA
68846 TAATTATACAT-ATA
1 TAATTATA-ATAATA
68860 -AA-TATTAATAA-A
1 TAATTA-TAATAATA
68872 TAATTATA
1 TAATTATA
68880 CATATAAATA
Statistics
Matches: 168, Mismatches: 25, Indels: 62
0.66 0.10 0.24
Matches are distributed among these distances:
11 8 0.05
12 24 0.14
13 60 0.36
14 40 0.24
15 29 0.17
16 3 0.02
17 4 0.02
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (14 bp):
TAATTATAATAATA
Found at i:68705 original size:10 final size:12
Alignment explanation
Indices: 68656--68749 Score: 57
Period size: 12 Copynumber: 7.3 Consensus size: 12
68646 TGATATTAAT
*
68656 ATATCATTAT-A
1 ATATAATTATAA
*
68667 ATATATTTATAATA
1 ATATAATTAT-A-A
68681 ATATAATTATAA
1 ATATAATTATAA
68693 ATATAATTA-AA
1 ATATAATTATAA
* *
68704 TATAGTATTTAAACA
1 -ATA-TAATTATA-A
68719 ATAATTAATTATAA
1 AT-A-TAATTATAA
*
68733 ATATTATTATTAA
1 ATATAATTA-TAA
68746 ATAT
1 ATAT
68750 TTATTAATTA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
11 10 0.15
12 18 0.27
13 14 0.21
14 16 0.24
15 8 0.12
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.45
Consensus pattern (12 bp):
ATATAATTATAA
Found at i:68735 original size:30 final size:30
Alignment explanation
Indices: 68700--68763 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
68690 TAAATATAAT
68700 TAAATA-TAGTATTTAAACAATAATTAATTA
1 TAAATATTAGTA-TTAAACAATAATTAATTA
* * * *
68730 TAAATATTATTATTAAATATTTATTAATTA
1 TAAATATTAGTATTAAACAATAATTAATTA
68760 TAAA
1 TAAA
68764 ACTATATTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 25 0.86
31 4 0.14
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (30 bp):
TAAATATTAGTATTAAACAATAATTAATTA
Found at i:68806 original size:43 final size:43
Alignment explanation
Indices: 68759--68848 Score: 96
Period size: 43 Copynumber: 2.1 Consensus size: 43
68749 TTTATTAATT
* *
68759 ATAAAACTATATTATAA-CTTATATAA-ATTAATAAATATAATAA
1 ATAAAA-TAT-TTATAAGATTAAATAATATTAATAAATATAATAA
* *
68802 AT-AAATATTTATAATGATTAAATAATATTTATAATTATAATAA
1 ATAAAATATTTATAA-GATTAAATAATATTAATAAATATAATAA
68845 ATAA
1 ATAA
68849 TTATACATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
40 6 0.15
41 3 0.08
42 10 0.26
43 19 0.49
44 1 0.03
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (43 bp):
ATAAAATATTTATAAGATTAAATAATATTAATAAATATAATAA
Found at i:68807 original size:60 final size:59
Alignment explanation
Indices: 68719--68846 Score: 145
Period size: 60 Copynumber: 2.2 Consensus size: 59
68709 TATTTAAACA
* * * * *
68719 ATAATTAATTATAAATATTATTATTAAATATTTATTAATTATAAAACT-ATA-TTATAACTT
1 ATAATAAATTATAAATATAATAAATAAATATTTA-TAATGATAAAA-TAATATTTATAA-TT
*
68779 AT-ATAAATTAATAAATATAATAAATAAATATTTATAATGATTAAATAATATTTATAATT
1 ATAATAAATT-ATAAATATAATAAATAAATATTTATAATGATAAAATAATATTTATAATT
68838 ATAATAAAT
1 ATAATAAAT
68847 AATTATACAT
Statistics
Matches: 58, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
58 1 0.02
59 22 0.38
60 35 0.60
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.45
Consensus pattern (59 bp):
ATAATAAATTATAAATATAATAAATAAATATTTATAATGATAAAATAATATTTATAATT
Found at i:68810 original size:39 final size:40
Alignment explanation
Indices: 68767--68892 Score: 102
Period size: 39 Copynumber: 3.1 Consensus size: 40
68757 TTATAAAACT
68767 ATATTATAACTTATATAAATTAATAAATATAATA-AATAA
1 ATATTATAACTTATATAAATTAATAAATATAATACAATAA
* ** *
68806 ATATTTATAA-TGAT-TAAA-TAATATTTATAATTATAATAA
1 ATA-TTATAACTTATATAAATTAATAAATATAA-TACAATAA
* *
68845 ATAATTAT-ACATATA-AATATTAATAAATAATTATACATATAA
1 AT-ATTATAACTTATATAA-ATTAATAAAT-ATAATACA-ATAA
68887 ATATTA
1 ATATTA
68893 AGGATTATTA
Statistics
Matches: 68, Mismatches: 9, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
37 10 0.15
38 7 0.10
39 21 0.31
40 8 0.12
41 13 0.19
42 9 0.13
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.41
Consensus pattern (40 bp):
ATATTATAACTTATATAAATTAATAAATATAATACAATAA
Found at i:68816 original size:26 final size:27
Alignment explanation
Indices: 68787--68891 Score: 76
Period size: 26 Copynumber: 3.9 Consensus size: 27
68777 TTATATAAAT
68787 TAATAAATATAATAA-ATAAATATTTA
1 TAATAAATATAATAATATAAATATTTA
* * ** *
68813 TAATGATTA-AATAATATTTATAATTA
1 TAATAAATATAATAATATAAATATTTA
*
68839 TAATAAATAATTATACATATAAATA--T-
1 TAATAAAT-ATAATA-ATATAAATATTTA
*
68865 TAATAAATAATTATACATATAAATATT
1 TAATAAAT-ATAATA-ATATAAATATT
68892 AAGGATTATT
Statistics
Matches: 63, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
25 5 0.08
26 46 0.73
27 2 0.03
28 3 0.05
29 7 0.11
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.41
Consensus pattern (27 bp):
TAATAAATATAATAATATAAATATTTA
Found at i:68862 original size:16 final size:16
Alignment explanation
Indices: 68841--68889 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
68831 TATAATTATA
68841 ATAAATAATTATACAT
1 ATAAATAATTATACAT
68857 ATAAAT-A-T-T--A-
1 ATAAATAATTATACAT
68867 ATAAATAATTATACAT
1 ATAAATAATTATACAT
68883 ATAAATA
1 ATAAATA
68890 TTAAGGATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 12
0.69 0.00 0.31
Matches are distributed among these distances:
10 6 0.22
11 2 0.07
12 1 0.04
13 2 0.07
14 1 0.04
15 2 0.07
16 13 0.48
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (16 bp):
ATAAATAATTATACAT
Found at i:68889 original size:20 final size:19
Alignment explanation
Indices: 68798--68863 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 19
68788 AATAAATATA
68798 ATAAATAAATATTTATAAT
1 ATAAATAAATATTTATAAT
68817 GATTAAAT-AATATTTATAAT
1 -A-TAAATAAATATTTATAAT
*
68837 -TATAATAAATAATTATACAT
1 ATA-AATAAATATTTATA-AT
68857 ATAAATA
1 ATAAATA
68864 TTAATAAATA
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
17 2 0.05
18 3 0.08
19 9 0.22
20 19 0.47
21 7 0.17
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (19 bp):
ATAAATAAATATTTATAAT
Found at i:68892 original size:26 final size:26
Alignment explanation
Indices: 68831--68893 Score: 110
Period size: 26 Copynumber: 2.5 Consensus size: 26
68821 AAATAATATT
*
68831 TATAATTA-TAATAAATAATTATACA
1 TATAAATATTAATAAATAATTATACA
68856 TATAAATATTAATAAATAATTATACA
1 TATAAATATTAATAAATAATTATACA
68882 TATAAATATTAA
1 TATAAATATTAA
68894 GGATTATTAA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
25 7 0.19
26 29 0.81
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (26 bp):
TATAAATATTAATAAATAATTATACA
Found at i:69163 original size:22 final size:22
Alignment explanation
Indices: 69115--69164 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
69105 ATTAACATTA
*
69115 TTATAA-TATTATTAATAATTT
1 TTATAATTATTAATAATAATTT
** *
69136 AAATAATTATTAATATTAATTT
1 TTATAATTATTAATAATAATTT
69158 TTATAAT
1 TTATAAT
69165 ATAAGATTTG
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (22 bp):
TTATAATTATTAATAATAATTT
Found at i:69262 original size:25 final size:23
Alignment explanation
Indices: 69234--69298 Score: 60
Period size: 23 Copynumber: 2.7 Consensus size: 23
69224 TTGGTATGAT
* *
69234 AATTCATTATAATAATTATGTAATG
1 AATT-ATTATAATAATAAT-TAATA
*
69259 AATTAATTAAAAT-ATAATTAATA
1 AATT-ATTATAATAATAATTAATA
*
69282 AACTATTATAATAATAA
1 AATTATTATAATAATAA
69299 CAAATTTATT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
22 7 0.21
23 11 0.33
24 4 0.12
25 11 0.33
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (23 bp):
AATTATTATAATAATAATTAATA
Found at i:69704 original size:16 final size:18
Alignment explanation
Indices: 69683--69723 Score: 59
Period size: 16 Copynumber: 2.4 Consensus size: 18
69673 TTAATAAAAT
*
69683 TAATAAACTATAA-TTAA
1 TAATAAACAATAATTTAA
69700 T-ATAAACAATAATTTAA
1 TAATAAACAATAATTTAA
69717 TAATAAA
1 TAATAAA
69724 TTTATTGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 10 0.48
17 6 0.29
18 5 0.24
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (18 bp):
TAATAAACAATAATTTAA
Found at i:70643 original size:82 final size:82
Alignment explanation
Indices: 70499--70681 Score: 199
Period size: 82 Copynumber: 2.2 Consensus size: 82
70489 ACAGCTTTCC
** * * * *
70499 CAGAATCCAATGAAGATTCCAACATCGGTTGAATTTTTTGATGAACATCCAATGAACCTACCCAG
1 CAGAATCCGGTGAAGATTCCAACACCGGTTGAAGTTTTCGATGAACATCCAACGAACCTACCCAG
*
70564 ATT-TTGATGAC-TTTTT
66 ATTCTAG-TGACTTTTTT
* ** * * *
70580 CTAGAATCCGGTGAAGATTCTAACACCGGTTGAAGTTTTCGATGAATGTCTAGCGAACTTACCCA
1 C-AGAATCCGGTGAAGATTCCAACACCGGTTGAAGTTTTCGATGAACATCCAACGAACCTACCCA
70645 GATTCTAGTGACTTTTTT
65 GATTCTAGTGACTTTTTT
**
70663 CAGAATTTGGTGAAGATTC
1 CAGAATCCGGTGAAGATTC
70682 AATCAGAGTT
Statistics
Matches: 84, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 1 0.01
82 75 0.89
83 8 0.10
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33
Consensus pattern (82 bp):
CAGAATCCGGTGAAGATTCCAACACCGGTTGAAGTTTTCGATGAACATCCAACGAACCTACCCAG
ATTCTAGTGACTTTTTT
Found at i:70986 original size:46 final size:46
Alignment explanation
Indices: 70918--71007 Score: 135
Period size: 46 Copynumber: 2.0 Consensus size: 46
70908 TTTTTTTGGT
*
70918 ATTTCTTAAAAATTCTCATTTAATACTCAAAGATTCTAATTTGAAG
1 ATTTCTTAAAAATTCTCATTTAAGACTCAAAGATTCTAATTTGAAG
* * * *
70964 ATTTCTTAAAGATTCTCCTTTAAGACTTAAAGATTCTCATTTGA
1 ATTTCTTAAAAATTCTCATTTAAGACTCAAAGATTCTAATTTGA
71008 GGATCACAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.36, C:0.14, G:0.08, T:0.42
Consensus pattern (46 bp):
ATTTCTTAAAAATTCTCATTTAAGACTCAAAGATTCTAATTTGAAG
Found at i:70992 original size:21 final size:21
Alignment explanation
Indices: 70922--71005 Score: 87
Period size: 21 Copynumber: 3.8 Consensus size: 21
70912 TTTGGTATTT
* *
70922 CTTAAAAATTCTCATTTAATA
1 CTTAAAGATTCTCATTTAAGA
* *
70943 CTCAAAGATTCTAATTTGAAGA
1 CTTAAAGATTCTCATTT-AAGA
*
70965 TTTCTTAAAGATTCTCCTTTAAGA
1 ---CTTAAAGATTCTCATTTAAGA
70989 CTTAAAGATTCTCATTT
1 CTTAAAGATTCTCATTT
71006 GAGGATCACA
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
21 30 0.59
22 3 0.06
24 4 0.08
25 14 0.27
ACGTcount: A:0.36, C:0.15, G:0.07, T:0.42
Consensus pattern (21 bp):
CTTAAAGATTCTCATTTAAGA
Found at i:71636 original size:126 final size:126
Alignment explanation
Indices: 71430--71848 Score: 422
Period size: 126 Copynumber: 3.3 Consensus size: 126
71420 TGATCATCAT
* * * * * * *
71430 TCATAGGCTTCTCAGCATTAGCAAGTTCAGAACAAGTTTCATCCTCTATC-CATTGGTCACCATT
1 TCATAGGCTTCTCAGCA-CAGCTATTTCAAAACAAATTTCATCTTCTATCAC-TTGGTCACCACT
* * *
71494 CACAAGCTTCTTAGCACTAGCCATTTCAGAACAAATTTCAACCTTC-ATCATTTGGTCACCAC
64 CACAAGCTTCTTAGCACTAGCCATTTCAGAACAAATTTCTATCTTCTATCACTTGGTCACCAC
* * * **
71556 TCACAAGCTTCTTAGCACTAGCTATTTCAAAACAAATTTTGTCTTCTATCACTTGGTCACCACTC
1 TCATAGGCTTCTCAGCAC-AGCTATTTCAAAACAAATTTCATCTTCTATCACTTGGTCACCACTC
* * * * * *
71621 ATAAACTTCTTAGCACTAGCCATTCCAGAAAAAATTT-TATTTTCTATCACTTGATCACCAC
65 ACAAGCTTCTTAGCACTAGCCATTTCAGAACAAATTTCTATCTTCTATCACTTGGTCACCAC
* * * * * *
71682 TCATAGGCTTCTCAGCACAGTTATTAT-AGAATAAATTTCATCTT-TCATCATTTGGTCATCGCT
1 TCATAGGCTTCTCAGCACAGCTATT-TCAAAACAAATTTCATCTTCT-ATCACTTGGTCACCACT
* * * *
71745 CACAGGCTTCTTAGCATTAG-TAGTTTCA-AACAAA-TTCTGTCTTCTATCACTTGGTCACCAC
64 CACAAGCTTCTTAGCACTAGCCA-TTTCAGAACAAATTTCTATCTTCTATCACTTGGTCACCAC
* *
71806 TCATAGGCTTCTCAGCACGAGCCATTCCAAAACAAATTTCATC
1 TCATAGGCTTCTCAGCAC-AGCTATTTCAAAACAAATTTCATC
71849 CATTGCCCCA
Statistics
Matches: 237, Mismatches: 47, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
123 2 0.01
124 46 0.19
125 75 0.32
126 113 0.48
127 1 0.00
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.33
Consensus pattern (126 bp):
TCATAGGCTTCTCAGCACAGCTATTTCAAAACAAATTTCATCTTCTATCACTTGGTCACCACTCA
CAAGCTTCTTAGCACTAGCCATTTCAGAACAAATTTCTATCTTCTATCACTTGGTCACCAC
Found at i:71801 original size:62 final size:63
Alignment explanation
Indices: 71430--71844 Score: 367
Period size: 63 Copynumber: 6.6 Consensus size: 63
71420 TGATCATCAT
* * * * * * * *
71430 TCATAGGCTTCTCAGCATTAGCAAGTTCAGAACAAGTTTCATCCTCTATC-CATTGGTCACCAT
1 TCATAGGCTTCTTAGCACTAGCTATTTCAGAACAAATTTTATCTTCTATCAC-TTGGTCACCAC
* * * * * *
71493 TCACAAGCTTCTTAGCACTAGCCATTTCAGAACAAATTTCAACCTTC-ATCATTTGGTCACCAC
1 TCATAGGCTTCTTAGCACTAGCTATTTCAGAACAAATTT-TATCTTCTATCACTTGGTCACCAC
* * * *
71556 TCACAAGCTTCTTAGCACTAGCTATTTCAAAACAAATTTTGTCTTCTATCACTTGGTCACCAC
1 TCATAGGCTTCTTAGCACTAGCTATTTCAGAACAAATTTTATCTTCTATCACTTGGTCACCAC
** * * * * *
71619 TCATAAACTTCTTAGCACTAGCCATTCCAGAAAAAATTTTATTTTCTATCACTTGATCACCAC
1 TCATAGGCTTCTTAGCACTAGCTATTTCAGAACAAATTTTATCTTCTATCACTTGGTCACCAC
* * * * * * *
71682 TCATAGGCTTCTCAGCAC-AGTTATTAT-AGAATAAATTTCATCTT-TCATCATTTGGTCATCGC
1 TCATAGGCTTCTTAGCACTAGCTATT-TCAGAACAAATTTTATCTTCT-ATCACTTGGTCACCAC
* * * *
71744 TCACAGGCTTCTTAGCATTAG-TAGTTTCA-AACAAATTCTGTCTTCTATCACTTGGTCACCAC
1 TCATAGGCTTCTTAGCACTAGCTA-TTTCAGAACAAATTTTATCTTCTATCACTTGGTCACCAC
* * * * *
71806 TCATAGGCTTCTCAGCACGAGCCATTCCAAAACAAATTT
1 TCATAGGCTTCTTAGCACTAGCTATTTCAGAACAAATTT
71845 CATCCATTGC
Statistics
Matches: 284, Mismatches: 57, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
61 1 0.00
62 98 0.35
63 181 0.64
64 4 0.01
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.33
Consensus pattern (63 bp):
TCATAGGCTTCTTAGCACTAGCTATTTCAGAACAAATTTTATCTTCTATCACTTGGTCACCAC
Found at i:72638 original size:7 final size:7
Alignment explanation
Indices: 72616--72697 Score: 71
Period size: 7 Copynumber: 11.6 Consensus size: 7
72606 CTTCCCATTC
72616 TTTCATTT
1 TTTC-TTT
72624 TTTC-TT
1 TTTCTTT
72630 TTTCTTT
1 TTTCTTT
72637 TTTCTTTT
1 TTTC-TTT
*
72645 TCCTTTTTT
1 T--TTCTTT
72654 TTTCTTT
1 TTTCTTT
72661 TTTCTTT
1 TTTCTTT
*
72668 TTGC-TT
1 TTTCTTT
72674 TTTC-TT
1 TTTCTTT
72680 TTTCTTT
1 TTTCTTT
* *
72687 TCTCATT
1 TTTCTTT
72694 TTTC
1 TTTC
72698 ATCCATTAGT
Statistics
Matches: 62, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
6 17 0.27
7 31 0.50
8 8 0.13
9 4 0.06
10 2 0.03
ACGTcount: A:0.02, C:0.17, G:0.01, T:0.79
Consensus pattern (7 bp):
TTTCTTT
Found at i:72639 original size:13 final size:13
Alignment explanation
Indices: 72616--72697 Score: 98
Period size: 13 Copynumber: 6.3 Consensus size: 13
72606 CTTCCCATTC
72616 TTTCATTTTTTCTT
1 TTTC-TTTTTTCTT
72630 TTTCTTTTTTCTT
1 TTTCTTTTTTCTT
*
72643 TTTC-CTTTT-TT
1 TTTCTTTTTTCTT
72654 TTTCTTTTTTCTT
1 TTTCTTTTTTCTT
72667 TTTGC-TTTTTCTT
1 TTT-CTTTTTTCTT
*
72680 TTTCTTTTCTCATT
1 TTTCTTTTTTC-TT
72694 TTTC
1 TTTC
72698 ATCCATTAGT
Statistics
Matches: 60, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
11 6 0.10
12 9 0.15
13 34 0.57
14 11 0.18
ACGTcount: A:0.02, C:0.17, G:0.01, T:0.79
Consensus pattern (13 bp):
TTTCTTTTTTCTT
Found at i:72663 original size:31 final size:30
Alignment explanation
Indices: 72621--72689 Score: 104
Period size: 31 Copynumber: 2.3 Consensus size: 30
72611 CATTCTTTCA
*
72621 TTTTTTC-TTTTTCTTTTTTCTTTTTCCTTT
1 TTTTTTCTTTTTTCTTTTTGCTTTTT-CTTT
72651 TTTTTTCTTTTTTCTTTTTGCTTTTTCTTT
1 TTTTTTCTTTTTTCTTTTTGCTTTTTCTTT
72681 TTCTTTTCT
1 TT-TTTTCT
72690 CATTTTTCAT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
30 13 0.36
31 23 0.64
ACGTcount: A:0.00, C:0.16, G:0.01, T:0.83
Consensus pattern (30 bp):
TTTTTTCTTTTTTCTTTTTGCTTTTTCTTT
Found at i:72699 original size:7 final size:6
Alignment explanation
Indices: 72622--72697 Score: 91
Period size: 6 Copynumber: 12.0 Consensus size: 6
72612 ATTCTTTCAT
*
72622 TTTTTC TTTTTC TTTTTTC TTTTTC CTTTT- TTTTTC TTTTTTC TTTTTGC
1 TTTTTC TTTTTC -TTTTTC TTTTTC TTTTTC TTTTTC -TTTTTC TTTTT-C
72672 TTTTTC TTTTTC TTTTCTC ATTTTTC
1 TTTTTC TTTTTC TTTT-TC -TTTTTC
72698 ATCCATTAGT
Statistics
Matches: 62, Mismatches: 2, Indels: 11
0.83 0.03 0.15
Matches are distributed among these distances:
5 4 0.06
6 32 0.52
7 22 0.35
8 4 0.06
ACGTcount: A:0.01, C:0.17, G:0.01, T:0.80
Consensus pattern (6 bp):
TTTTTC
Found at i:72910 original size:17 final size:18
Alignment explanation
Indices: 72890--72925 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
72880 TTATGAACTT
72890 TTAATAATTATTAA-AAA
1 TTAATAATTATTAATAAA
72907 TTAATAATTATTAATAAA
1 TTAATAATTATTAATAAA
72925 T
1 T
72926 AATTTATCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
TTAATAATTATTAATAAA
Found at i:74127 original size:4 final size:4
Alignment explanation
Indices: 74118--74156 Score: 53
Period size: 4 Copynumber: 9.8 Consensus size: 4
74108 AGTATCAACT
*
74118 ATTA ATTA ATAA ATTA A-TA ATTA ATTA TATTA ATTA ATT
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA -ATTA ATTA ATT
74157 TTAGTTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
3 3 0.10
4 24 0.77
5 4 0.13
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (4 bp):
ATTA
Found at i:74166 original size:13 final size:13
Alignment explanation
Indices: 74079--74156 Score: 51
Period size: 12 Copynumber: 6.4 Consensus size: 13
74069 TTTAGTGACA
* *
74079 TAATTATTTTGAT
1 TAATTATATTAAT
*
74092 T-ATTAAATTAAT
1 TAATTATATTAAT
* *
74104 T-ATTAGTATCAAC
1 TAATTA-TATTAAT
74117 T-ATTA-ATTAAT
1 TAATTATATTAAT
*
74128 AAATTA-A-TAAT
1 TAATTATATTAAT
74139 TAATTATATTAAT
1 TAATTATATTAAT
74152 TAATT
1 TAATT
74157 TTAGTTATTA
Statistics
Matches: 51, Mismatches: 10, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
11 13 0.25
12 19 0.37
13 19 0.37
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (13 bp):
TAATTATATTAAT
Found at i:74250 original size:7 final size:7
Alignment explanation
Indices: 74238--74267 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
74228 CTCCCATATA
74238 TATTAAT
1 TATTAAT
74245 TATTAAT
1 TATTAAT
74252 TATTAAT
1 TATTAAT
74259 TATT-AT
1 TATTAAT
74265 TAT
1 TAT
74268 ATATTTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.22
7 18 0.78
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
TATTAAT
Found at i:74257 original size:14 final size:13
Alignment explanation
Indices: 74238--74280 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
74228 CTCCCATATA
74238 TATTAATTATTAAT
1 TATTAATTATT-AT
74252 TATTAATTATTAT
1 TATTAATTATTAT
*
74265 TA-TATATTTTTAT
1 TATTA-ATTATTAT
74278 TAT
1 TAT
74281 GATATATAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
12 2 0.08
13 13 0.50
14 11 0.42
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
TATTAATTATTAT
Found at i:74498 original size:6 final size:6
Alignment explanation
Indices: 74470--74515 Score: 51
Period size: 6 Copynumber: 7.7 Consensus size: 6
74460 AATATATAAT
*
74470 ATTATA ATAATA ATATATAA ATTATA ATTA-A ATTA-A ATTATA ATTA
1 ATTATA ATTATA AT-TAT-A ATTATA ATTATA ATTATA ATTATA ATTA
74516 ATTTAAAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
5 10 0.29
6 17 0.49
7 5 0.14
8 3 0.09
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (6 bp):
ATTATA
Found at i:74506 original size:16 final size:16
Alignment explanation
Indices: 74487--74522 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
74477 TAATAATATA
74487 TAAATTATAATTAAAT
1 TAAATTATAATTAAAT
*
74503 TAAATTATAATTAATT
1 TAAATTATAATTAAAT
74519 TAAA
1 TAAA
74523 AATTGTCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TAAATTATAATTAAAT
Found at i:74659 original size:21 final size:19
Alignment explanation
Indices: 74617--74652 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
74607 AATAATTTTA
*
74617 AAAAATAATATTTTAATAT
1 AAAAATAATATTATAATAT
74636 AAAAATAATA-TATAATA
1 AAAAATAATATTATAATA
74653 ATCTAAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAAATAATATTATAATAT
Found at i:74747 original size:27 final size:25
Alignment explanation
Indices: 74695--74751 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 25
74685 ACTTATTCAT
*
74695 TTATAATTAAATAAATTATAATTTA
1 TTATAATTAAATAAATAATAATTTA
74720 TTATAATTAAAATAAAATAATCAA-TTA
1 TTATAATT-AAAT-AAATAAT-AATTTA
74747 TTATA
1 TTATA
74752 TATATTTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 8 0.29
26 4 0.14
27 14 0.50
28 2 0.07
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (25 bp):
TTATAATTAAATAAATAATAATTTA
Found at i:74820 original size:39 final size:35
Alignment explanation
Indices: 74769--74857 Score: 108
Period size: 39 Copynumber: 2.4 Consensus size: 35
74759 AAATTATAAA
*
74769 TATTAATAATTATTTTAATGAATATT-TTAATAATCAATT
1 TATTAATTATTATTTTAAT-AA-ATTATTAATAAT--A-T
74808 TATTAATTATTATTTTAATAAATTATTAATAATAT
1 TATTAATTATTATTTTAATAAATTATTAATAATAT
74843 TATTATATTATTATT
1 TATTA-ATTATTATT
74858 ACTAATAACA
Statistics
Matches: 47, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
35 6 0.13
36 10 0.21
37 3 0.06
38 10 0.21
39 18 0.38
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.55
Consensus pattern (35 bp):
TATTAATTATTATTTTAATAAATTATTAATAATAT
Found at i:74844 original size:12 final size:12
Alignment explanation
Indices: 74769--74864 Score: 76
Period size: 12 Copynumber: 7.9 Consensus size: 12
74759 AAATTATAAA
74769 TATTAATAATTAT
1 TATTAATAA-TAT
74782 T-TTAATGAATAT
1 TATTAAT-AATAT
74794 T-TTAATAATCAATT
1 TATTAATAAT--A-T
*
74808 TATTAATTATTAT
1 TATTAA-TAATAT
74821 T-TTAATAA-AT
1 TATTAATAATAT
74831 TATTAATAATAT
1 TATTAATAATAT
*
74843 TATT-ATATTAT
1 TATTAATAATAT
*
74854 TATTACTAATA
1 TATTAATAATA
74865 ACATATATAG
Statistics
Matches: 69, Mismatches: 5, Indels: 19
0.74 0.05 0.20
Matches are distributed among these distances:
10 3 0.04
11 22 0.32
12 28 0.41
13 6 0.09
14 3 0.04
15 4 0.06
16 3 0.04
ACGTcount: A:0.44, C:0.02, G:0.01, T:0.53
Consensus pattern (12 bp):
TATTAATAATAT
Found at i:75041 original size:22 final size:22
Alignment explanation
Indices: 74999--75041 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
74989 CTTTTAGTTA
* *
74999 TATTCAAATAATACTATAATAT
1 TATTCAAATAATACAACAATAT
75021 TATT-AAATTAATACAACAATA
1 TATTCAAA-TAATACAACAATA
75042 ATTGTTTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.37
Consensus pattern (22 bp):
TATTCAAATAATACAACAATAT
Found at i:75694 original size:15 final size:16
Alignment explanation
Indices: 75669--75699 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
75659 AATATATTTA
75669 TTAATATTTATTAATT
1 TTAATATTTATTAATT
75685 TTAA-ATTTATTAATT
1 TTAATATTTATTAATT
75700 AATTAGTACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTAATATTTATTAATT
Found at i:76001 original size:3 final size:3
Alignment explanation
Indices: 75993--76061 Score: 61
Period size: 3 Copynumber: 22.0 Consensus size: 3
75983 TTAATTATTG
* *
75993 ATA ATA ATA ATGA ATTA AT- ATT ACA ATA ATTA ATA ATA AT- ATA TATA
1 ATA ATA ATA AT-A A-TA ATA ATA ATA ATA A-TA ATA ATA ATA ATA -ATA
76040 ATA ATA ATA ATA ATTA ATA ATA
1 ATA ATA ATA ATA A-TA ATA ATA
76062 TTCAATTTAA
Statistics
Matches: 56, Mismatches: 3, Indels: 14
0.77 0.04 0.19
Matches are distributed among these distances:
2 4 0.07
3 38 0.68
4 13 0.23
5 1 0.02
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (3 bp):
ATA
Found at i:77159 original size:182 final size:178
Alignment explanation
Indices: 76676--77229 Score: 584
Period size: 182 Copynumber: 3.1 Consensus size: 178
76666 TTAATAAGGC
* * * * *
76676 AATTAATAAGTAAATG-ATTTAAAAAATAAATCTATTTATCGAACACA-TTCAAATCGTTATGAC
1 AATTAAAAAGTAAAAGAATTAAAAAAATAAATCTGTTTATCGAACA-AGTTCAAATAGTTATGAC
* * *
76739 TATCTAAATAATTATTTATTTCAAATTC-TTATGACTTTTTTGTTTTGTCATAAAACAATTGTTT
65 TA-CTTAATAATTATCTATTTCAAA-TCATTA-AAC-TTTTTGTTTTGTCATAAAACAATTGTTT
* * * * * * * *
76803 CTGTCCA-TACGGGCTTATTCGAATTAAAATAATATTGATTTATTAATATTTCAAC
126 CTATTCATTA--AGCTTATTTGAAATAAAATAATA-TAATTTATTAATATTCCAAA
* * * * *
76858 AATTAATAAGTAAAAGATTTAAAAAAAT-AA---GTTTACCAAACAAGTTCAAATAGTCATGACT
1 AATTAAAAAGTAAAAGAATTAAAAAAATAAATCTGTTTATCGAACAAGTTCAAATAGTTATGACT
* * * * * *
76919 ATTTGAATCATTATCTACTTCAAATCATTGAAACATTTTGTTTTGTAATAAAACAATTGTTTCAA
66 ACTT-AATAATTATCTATTTCAAATCATT-AAACTTTTTGTTTTGTCATAAAACAATTGTTTCTA
*
76984 TTCATGTTAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCCAAA
129 TTCAT-TAAGCTTATTTGAAATAAAATAATA-TAATTTATTAATATTCCAAA
* *
77036 AATTAAAAAGTAAGAGAATTAAAAAAATAAATCTGTTTATTGAACAAGTTCAAATAGTTATGACT
1 AATTAAAAAGTAAAAGAATTAAAAAAATAAATCTGTTTATCGAACAAGTTCAAATAGTTATGACT
* * *
77101 ACCTTAATAATTATCTATTTCAAAACATTACAACTTTTTGTTTTGTCACAAAACAATTGGTTCTA
66 A-CTTAATAATTATCTATTTCAAATCATTA-AACTTTTTGTTTTGTCATAAAACAATTGTTTCTA
* *
77166 TTCATTCAAGCTTATTTCAAATAAAATAATATAAATTTATTAATGTTCCAAA
129 TTCATT-AAGCTTATTTGAAATAAAATAATAT-AATTTATTAATATTCCAAA
*
77218 AATTAACAAGTA
1 AATTAAAAAGTA
77230 TAAATTTTAA
Statistics
Matches: 310, Mismatches: 47, Indels: 30
0.80 0.12 0.08
Matches are distributed among these distances:
178 96 0.31
179 47 0.15
180 2 0.01
181 3 0.01
182 151 0.49
183 11 0.04
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (178 bp):
AATTAAAAAGTAAAAGAATTAAAAAAATAAATCTGTTTATCGAACAAGTTCAAATAGTTATGACT
ACTTAATAATTATCTATTTCAAATCATTAAACTTTTTGTTTTGTCATAAAACAATTGTTTCTATT
CATTAAGCTTATTTGAAATAAAATAATATAATTTATTAATATTCCAAA
Found at i:78109 original size:21 final size:21
Alignment explanation
Indices: 78084--78347 Score: 180
Period size: 21 Copynumber: 12.0 Consensus size: 21
78074 GGTTTCACAT
* *
78084 CTCAAAAATTCTTATTTGAAA
1 CTCAAAGATTCTCATTTGAAA
* *
78105 CTCAAAGATTCGCATTTAAAA
1 CTCAAAGATTCTCATTTGAAA
* * *
78126 CTTAAACATTCTCATTTGAGGA
1 CTCAAAGATTCTCATTTGA-AA
78148 CTCAAAGATTCTCATTT-AAGGA
1 CTCAAAGATTCTCATTTGAA--A
*
78170 TTTCTTAAAGATTCTCATTT-AAGA
1 ---CTCAAAGATTCTCATTTGAA-A
*
78194 CTTAAAGATTCTCATTT-ATAA
1 CTCAAAGATTCTCATTTGA-AA
78215 CTCAAAGATTCTCATTTGAAGA
1 CTCAAAGATTCTCATTTGAA-A
* * * *
78237 TTTCTTAAAAATTCTTATTT-ATGA
1 ---CTCAAAGATTCTCATTTGA-AA
78261 CTCAAAGATTCTCATTT-AAGA
1 CTCAAAGATTCTCATTTGAA-A
*
78282 CTCAAAGATTCTCATTTGAGGAT
1 CTCAAAGATTCTCATTTGA--AA
*
78305 CTCTTAAAGATTCTCATTT-ATGA
1 CTC--AAAGATTCTCATTTGA-AA
78328 CTCAAAGATTCTCATTTGAA
1 CTCAAAGATTCTCATTTGAA
78348 GATTTATTAA
Statistics
Matches: 196, Mismatches: 27, Indels: 40
0.75 0.10 0.15
Matches are distributed among these distances:
21 116 0.59
22 22 0.11
23 6 0.03
24 6 0.03
25 46 0.23
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (21 bp):
CTCAAAGATTCTCATTTGAAA
Found at i:78244 original size:46 final size:42
Alignment explanation
Indices: 78084--78344 Score: 229
Period size: 46 Copynumber: 5.9 Consensus size: 42
78074 GGTTTCACAT
* * * *
78084 CTCAAAAATTCTTATTTGAA-ACTCAAAGATTCGCATTTAAAA
1 CTCAAAGATTCTCATTT-AAGACTCAAAGATTCTCATTTATAA
* * *
78126 CTTAAACATTCTCATTTGAGGACTCAAAGATTCTCATTTA-AGGA
1 CTCAAAGATTCTCATTT-AAGACTCAAAGATTCTCATTTATA--A
* *
78170 TTTCTTAAAGATTCTCATTTAAGACTTAAAGATTCTCATTTATAA
1 ---CTCAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTATAA
* * * *
78215 CTCAAAGATTCTCATTTGAAGATTTCTTAAAAATTCTTATTTATGA
1 CTCAAAGATTCTCATTT-AAGA---CTCAAAGATTCTCATTTATAA
* *
78261 CTCAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGAGGAT
1 CTCAAAGATTCTCATTTAAGACTCAAAGATTCTCATTT-A-TAA
*
78305 CTCTTAAAGATTCTCATTTATGACTCAAAGATTCTCATTT
1 CTC--AAAGATTCTCATTTAAGACTCAAAGATTCTCATTT
78345 GAAGATTTAT
Statistics
Matches: 185, Mismatches: 19, Indels: 26
0.80 0.08 0.11
Matches are distributed among these distances:
42 47 0.25
43 23 0.12
44 4 0.02
45 5 0.03
46 89 0.48
47 17 0.09
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (42 bp):
CTCAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTATAA
Found at i:78251 original size:67 final size:66
Alignment explanation
Indices: 78108--78344 Score: 314
Period size: 67 Copynumber: 3.5 Consensus size: 66
78098 TTTGAAACTC
* * * * *
78108 AAAGATTCGCATTTAAAACTTAAACATTCTCATTTGAGGACTCAAAGATTCTCATTT-AAGGATT
1 AAAGATTCTCATTTAAGACTCAAAGATTCTCATTT-A-AACTCAAAGATTCTCATTTGAA-GATT
78172 TCTT
63 TCTT
*
78176 AAAGATTCTCATTTAAGACTTAAAGATTCTCATTTATAACTCAAAGATTCTCATTTGAAGATTTC
1 AAAGATTCTCATTTAAGACTCAAAGATTCTCATTTA-AACTCAAAGATTCTCATTTGAAGATTTC
78241 TT
65 TT
* * * * *
78243 AAAAATTCTTATTTATGACTCAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGAGGATCTC
1 AAAGATTCTCATTTAAGACTCAAAGATTCTCATTTAA-ACTCAAAGATTCTCATTTGAAGATTTC
78308 TT
65 TT
*
78310 AAAGATTCTCATTTATGACTCAAAGATTCTCATTT
1 AAAGATTCTCATTTAAGACTCAAAGATTCTCATTT
78345 GAAGATTTAT
Statistics
Matches: 154, Mismatches: 13, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
66 1 0.01
67 119 0.77
68 34 0.22
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (66 bp):
AAAGATTCTCATTTAAGACTCAAAGATTCTCATTTAAACTCAAAGATTCTCATTTGAAGATTTCT
T
Found at i:78346 original size:46 final size:45
Alignment explanation
Indices: 78126--78344 Score: 234
Period size: 46 Copynumber: 4.8 Consensus size: 45
78116 GCATTTAAAA
* * *
78126 CTTAAACATTCTCATTTGAGGACTCAAAGATTCTCATTTAAGGATTT
1 CTTAAAGATTCTCATTT-AAGACTCAAAGATTCTCATTT-AGGATCT
* * *
78173 CTTAAAGATTCTCATTTAAGACTTAAAGATTCTCATTTA-TAACT
1 CTTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTAGGATCT
* * * *
78217 C--AAAGATTCTCATTTGAAGATTTCTTAAAAATTCTTATTTATGA-CT
1 CTTAAAGATTCTCATTT-AAGA---CTCAAAGATTCTCATTTAGGATCT
78263 C--AAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGAGGATCT
1 CTTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTT-AGGATCT
*
78307 CTTAAAGATTCTCATTTATGACTCAAAGATTCTCATTT
1 CTTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTT
78345 GAAGATTTAT
Statistics
Matches: 149, Mismatches: 14, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
42 28 0.19
43 7 0.05
44 6 0.04
45 5 0.03
46 86 0.58
47 17 0.11
ACGTcount: A:0.34, C:0.16, G:0.10, T:0.40
Consensus pattern (45 bp):
CTTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTAGGATCT
Found at i:79442 original size:16 final size:16
Alignment explanation
Indices: 79423--79465 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
79413 TCTTTTAAAA
79423 TAAATATTAATTAATC
1 TAAATATTAATTAATC
*
79439 TAAAT-TATAATTAATT
1 TAAATAT-TAATTAATC
*
79455 TAAATAATAAT
1 TAAATATTAAT
79466 ATTATAAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 1 0.04
16 22 0.96
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
TAAATATTAATTAATC
Found at i:79756 original size:15 final size:16
Alignment explanation
Indices: 79729--79772 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
79719 ATGTTTAGTT
* *
79729 ATAATTAATAATATTA
1 ATAATTTATAATAATA
*
79745 TTAATTTA-AATAATA
1 ATAATTTATAATAATA
79760 ATAATTTATAATA
1 ATAATTTATAATA
79773 CATGTAATAG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 13 0.57
16 10 0.43
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
ATAATTTATAATAATA
Found at i:80024 original size:19 final size:18
Alignment explanation
Indices: 80002--80040 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
79992 TAAAATACTA
*
80002 TAATATAGTATCTTCTTAT
1 TAATATAGTAT-TTATTAT
80021 TAATATAGTATTTATTAT
1 TAATATAGTATTTATTAT
80039 TA
1 TA
80041 CACTTAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.54
Consensus pattern (18 bp):
TAATATAGTATTTATTAT
Found at i:80442 original size:22 final size:20
Alignment explanation
Indices: 80397--80434 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
80387 TTAATAATAT
*
80397 ATAAATTTTTAAGTATATTA
1 ATAAAGTTTTAAGTATATTA
80417 ATAAAGTTTTAAGTATAT
1 ATAAAGTTTTAAGTATAT
80435 ATACATAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (20 bp):
ATAAAGTTTTAAGTATATTA
Found at i:80597 original size:24 final size:23
Alignment explanation
Indices: 80548--80610 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 23
80538 TATAATTATG
*
80548 TATATTAATAAATATTTAAATAA
1 TATATTAATAAATAGTTAAATAA
*
80571 TATACTTAAT-AATAGTTAATATTA
1 TATA-TTAATAAATAGTTAA-ATAA
80595 TATATGTAATTAAATA
1 TATAT-TAA-TAAATA
80611 AACATAATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
23 13 0.39
24 15 0.45
25 1 0.03
26 4 0.12
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.44
Consensus pattern (23 bp):
TATATTAATAAATAGTTAAATAA
Found at i:81645 original size:23 final size:23
Alignment explanation
Indices: 81619--81664 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
81609 CTAATAAGTA
81619 ATAATATTAAT-GATTATATAATT
1 ATAATATTAATCGATTAT-TAATT
* *
81642 ATAATCTTATTCGATTATTAATT
1 ATAATATTAATCGATTATTAATT
81665 TAAAGTCTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.50
Consensus pattern (23 bp):
ATAATATTAATCGATTATTAATT
Found at i:83243 original size:18 final size:19
Alignment explanation
Indices: 83212--83249 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
83202 GTATTAGTCA
83212 ACTTAATATTAAAT-TATT
1 ACTTAATATTAAATATATT
83230 ACTT-ATATTCAAATATATT
1 ACTTAATATT-AAATATATT
83249 A
1 A
83250 TTAGTTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.28
18 8 0.44
19 5 0.28
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (19 bp):
ACTTAATATTAAATATATT
Found at i:83309 original size:21 final size:21
Alignment explanation
Indices: 83277--83329 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
83267 TTAATATACT
83277 ATTATATTAAAACAAAATATTTG
1 ATTATA-TAAAAC-AAATATTTG
* *
83300 ATT-TATAAAACAAGTATTTT
1 ATTATATAAAACAAATATTTG
83320 ATTATATAAA
1 ATTATATAAA
83330 TTAAAATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 10 0.37
21 12 0.44
22 2 0.07
23 3 0.11
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.42
Consensus pattern (21 bp):
ATTATATAAAACAAATATTTG
Found at i:83446 original size:17 final size:19
Alignment explanation
Indices: 83411--83460 Score: 70
Period size: 17 Copynumber: 2.8 Consensus size: 19
83401 ATAGTGTAAT
83411 TATTTAAAATTTATTTAAA
1 TATTTAAAATTTATTTAAA
83430 TATTTAAAA-TT-TTTAAA
1 TATTTAAAATTTATTTAAA
*
83447 TAGTT-AAATTTATT
1 TATTTAAAATTTATT
83461 AATAATTATA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
16 3 0.11
17 12 0.43
18 4 0.14
19 9 0.32
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (19 bp):
TATTTAAAATTTATTTAAA
Found at i:84249 original size:20 final size:21
Alignment explanation
Indices: 84204--84264 Score: 74
Period size: 20 Copynumber: 3.0 Consensus size: 21
84194 AATATAGAGC
*
84204 ATTTGTTT-ATAATATAAATTTA
1 ATTTGTTTAATTATATAAA--TA
84226 ATTTGTTTAATTATATAAAT-
1 ATTTGTTTAATTATATAAATA
84246 ATTTGTTTAATTA-ATAAAT
1 ATTTGTTTAATTATATAAAT
84265 TGTTGTTACT
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
19 6 0.16
20 13 0.35
21 1 0.03
22 8 0.22
23 9 0.24
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (21 bp):
ATTTGTTTAATTATATAAATA
Found at i:84613 original size:22 final size:23
Alignment explanation
Indices: 84563--84621 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 23
84553 TTAAGACTAT
* * *
84563 TAATAAATAAAATAACTATATAA
1 TAATTAATAAATTAAATATATAA
* *
84586 TTATT-ATAAATTAAATATATTA
1 TAATTAATAAATTAAATATATAA
84608 TAATTAATAAATTA
1 TAATTAATAAATTA
84622 GTTAATACTA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
22 18 0.62
23 11 0.38
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (23 bp):
TAATTAATAAATTAAATATATAA
Found at i:84893 original size:23 final size:24
Alignment explanation
Indices: 84867--84925 Score: 63
Period size: 23 Copynumber: 2.5 Consensus size: 24
84857 ATATTATAAC
84867 ATTAATATAATATAAATT-ATTAT
1 ATTAATATAATATAAATTAATTAT
*
84890 ATTAA-ATAAATATTATATTAATTAT
1 ATTAATAT-AATA-TAAATTAATTAT
84915 A-TAAT-TAATAT
1 ATTAATATAATAT
84926 TATTTGATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
22 3 0.10
23 13 0.42
24 9 0.29
25 6 0.19
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (24 bp):
ATTAATATAATATAAATTAATTAT
Found at i:84905 original size:16 final size:17
Alignment explanation
Indices: 84878--84910 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
84868 TTAATATAAT
84878 ATAAATTATTATATTAA
1 ATAAATTATTATATTAA
84895 ATAAA-TATTATATTAA
1 ATAAATTATTATATTAA
84911 TTATATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
ATAAATTATTATATTAA
Found at i:84939 original size:18 final size:18
Alignment explanation
Indices: 84867--84927 Score: 51
Period size: 16 Copynumber: 3.6 Consensus size: 18
84857 ATATTATAAC
84867 ATTAATA-TAA-TATA-A
1 ATTAATATTAATTATATA
* *
84882 ATTATTATATTAAATAAAT-
1 ATTA--ATATTAATTATATA
84901 ATT-ATATTAATTATATA
1 ATTAATATTAATTATATA
84918 ATTAATATTA
1 ATTAATATTA
84928 TTTGATAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 11
0.72 0.06 0.22
Matches are distributed among these distances:
15 4 0.11
16 11 0.31
17 6 0.17
18 9 0.25
19 6 0.17
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
ATTAATATTAATTATATA
Found at i:85016 original size:31 final size:30
Alignment explanation
Indices: 84941--85016 Score: 75
Period size: 33 Copynumber: 2.5 Consensus size: 30
84931 GATAAATTAT
*
84941 AATTTAAT-ATAATTATAAATTCTTAATAA
1 AATTTAATAATAATTATAAATACTTAATAA
* *
84970 AATTTCATAATTAATTAAATAAATACTTAGT-A
1 AATTTAATAA-TAATT--ATAAATACTTAATAA
*
85002 ATTTTAATAATAATT
1 AATTTAATAATAATT
85017 TGTAATTATT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
29 7 0.18
30 1 0.03
31 10 0.26
32 9 0.24
33 11 0.29
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.45
Consensus pattern (30 bp):
AATTTAATAATAATTATAAATACTTAATAA
Found at i:85051 original size:18 final size:19
Alignment explanation
Indices: 85012--85052 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
85002 ATTTTAATAA
*
85012 TAATTTGTAATTATTTATT
1 TAATTTGTAATTATTTAAT
85031 TAATTT-TAATT-TATTAAT
1 TAATTTGTAATTAT-TTAAT
85049 TAAT
1 TAAT
85053 ATCTAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 1 0.05
18 13 0.65
19 6 0.30
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (19 bp):
TAATTTGTAATTATTTAAT
Found at i:85419 original size:38 final size:36
Alignment explanation
Indices: 85349--85436 Score: 99
Period size: 38 Copynumber: 2.4 Consensus size: 36
85339 ACGATTATCA
*
85349 ATATATTAATTATATTATATTTTTGAATTTAATTGTT
1 ATATATTAATTAAATTATATTTTTGAATTTAATT-TT
85386 ATATATTATATTAAATTATAATTTGTT-AA-TTAATTTT
1 ATATATTA-ATTAAATTAT-ATTT-TTGAATTTAATTTT
*
85423 ATAAAATTAATTAA
1 AT-ATATTAATTAA
85437 CAAATAATAT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
37 17 0.38
38 20 0.44
39 6 0.13
40 2 0.04
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (36 bp):
ATATATTAATTAAATTATATTTTTGAATTTAATTTT
Found at i:85853 original size:22 final size:22
Alignment explanation
Indices: 85828--85878 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
85818 TATTTTAAAT
* *
85828 TATTATTTAATTATTATTATAA
1 TATTATTTAATAATAATTATAA
**
85850 TATTAAATAATAATAATTATAA
1 TATTATTTAATAATAATTATAA
*
85872 TAATATT
1 TATTATT
85879 GTTATTATAA
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TATTATTTAATAATAATTATAA
Found at i:86538 original size:34 final size:33
Alignment explanation
Indices: 86474--86538 Score: 78
Period size: 34 Copynumber: 1.9 Consensus size: 33
86464 ATTATTTAAT
* *
86474 TTAATTATAATATAATACTTATTTAATATTATG
1 TTAATTATAATATAATACTAAATTAATATTATG
*
86507 TTAATTTATAATATAATTA-TAAATTATTATTA
1 TTAA-TTATAATATAA-TACTAAATTAATATTA
86539 ACTTATAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 4 0.15
34 21 0.78
35 2 0.07
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (33 bp):
TTAATTATAATATAATACTAAATTAATATTATG
Found at i:87157 original size:28 final size:28
Alignment explanation
Indices: 87126--87208 Score: 86
Period size: 28 Copynumber: 3.1 Consensus size: 28
87116 GATAATATTG
87126 ATTATATTTAGTTTAATTTTATAAATAT
1 ATTATATTTAGTTTAATTTTATAAATAT
* * *
87154 ATTAAATATAGTTTAATATTCATAAATA-
1 ATTATATTTAGTTTAAT-TTTATAAATAT
87182 ATTAT-TTTA-TTT-ATTTGT-TAAATAT
1 ATTATATTTAGTTTAATTT-TATAAATAT
87207 AT
1 AT
87209 AATTATACTT
Statistics
Matches: 46, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
24 8 0.17
25 4 0.09
26 3 0.07
27 3 0.07
28 19 0.41
29 9 0.20
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (28 bp):
ATTATATTTAGTTTAATTTTATAAATAT
Found at i:87223 original size:14 final size:13
Alignment explanation
Indices: 87204--87250 Score: 51
Period size: 14 Copynumber: 3.5 Consensus size: 13
87194 ATTTGTTAAA
87204 TATATAATTATACT
1 TATATAATTATA-T
*
87218 TATATAATAATA-
1 TATATAATTATAT
*
87230 TATATAATTAAATT
1 TATATAATTATA-T
87244 TATATAA
1 TATATAA
87251 ATTCAATAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
12 10 0.36
14 18 0.64
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (13 bp):
TATATAATTATAT
Found at i:87889 original size:15 final size:16
Alignment explanation
Indices: 87864--87894 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
87854 GTGAATAGTC
87864 TATTGAATCAATAATT
1 TATTGAATCAATAATT
87880 TATT-AATCAATAATT
1 TATTGAATCAATAATT
87895 AAAATATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.45
Consensus pattern (16 bp):
TATTGAATCAATAATT
Found at i:87990 original size:14 final size:14
Alignment explanation
Indices: 87973--88015 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
87963 TATTTATTAA
* *
87973 TAAATATTGATAAT
1 TAAATATTAAAAAT
*
87987 TAAATAATAAAAAT
1 TAAATATTAAAAAT
*
88001 TAAATATTTAAAAT
1 TAAATATTAAAAAT
88015 T
1 T
88016 TAAAATTATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (14 bp):
TAAATATTAAAAAT
Found at i:88034 original size:23 final size:24
Alignment explanation
Indices: 87999--88043 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
87989 AATAATAAAA
*
87999 ATTAAATATTTAAAATTTAAAATT
1 ATTAAATATTTAAAATTCAAAATT
* *
88023 ATTAATTA-TTAACATTCAAAA
1 ATTAAATATTTAAAATTCAAAA
88044 AATTAATAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 11 0.61
24 7 0.39
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.42
Consensus pattern (24 bp):
ATTAAATATTTAAAATTCAAAATT
Found at i:88639 original size:60 final size:63
Alignment explanation
Indices: 88575--88690 Score: 152
Period size: 60 Copynumber: 1.9 Consensus size: 63
88565 AAGCATAATA
88575 TATTTTAATATATAATTA-TA-AAATAGATAATTAATA-TA-TATAAATTA-TCAAATAATTAAC
1 TATTTT-AT-TATAATTATTATAAATAGATAATTAATATTATTATAAATTATTCAAATAATTAAC
* **
88635 TATTTTATTATAATTATTATTAATTTATAATTAATATTATTATAAATTATTCAAAT
1 TATTTTATTATAATTATTATAAATAGATAATTAATATTATTATAAATTATTCAAAT
88691 TTAATAAATT
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
58 8 0.17
59 4 0.08
60 19 0.40
61 2 0.04
62 9 0.19
63 6 0.12
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (63 bp):
TATTTTATTATAATTATTATAAATAGATAATTAATATTATTATAAATTATTCAAATAATTAAC
Found at i:88662 original size:17 final size:15
Alignment explanation
Indices: 88635--88685 Score: 59
Period size: 17 Copynumber: 3.3 Consensus size: 15
88625 AATAATTAAC
88635 TATT-TTATTATAAT
1 TATTATTATTATAAT
88649 TATTATTAATTTATAAT
1 TATTATT-A-TTATAAT
*
88666 TAATATTATTATAAAT
1 TATTATTATTAT-AAT
88682 TATT
1 TATT
88686 CAAATTTAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
14 4 0.13
15 6 0.19
16 8 0.26
17 13 0.42
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TATTATTATTATAAT
Found at i:88692 original size:32 final size:32
Alignment explanation
Indices: 88601--88705 Score: 89
Period size: 32 Copynumber: 3.3 Consensus size: 32
88591 TATAAAATAG
*
88601 ATAATTAATA-TA-TATAAATTA-TCAAA-TA
1 ATAATTAATATTATTATAAATTATTCAAATTT
* *
88629 ATTAACT-ATTTTATTAT-AATTATT-ATTAATTT
1 A-TAATTAATATTATTATAAATTATTCA--AATTT
88661 ATAATTAATATTATTATAAATTATTCAAATTT
1 ATAATTAATATTATTATAAATTATTCAAATTT
88693 AATAAATTAATAT
1 -AT-AATTAATAT
88706 AACCTATACC
Statistics
Matches: 60, Mismatches: 5, Indels: 18
0.72 0.06 0.22
Matches are distributed among these distances:
28 3 0.05
29 12 0.20
30 4 0.07
31 6 0.10
32 16 0.27
33 9 0.15
34 10 0.17
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (32 bp):
ATAATTAATATTATTATAAATTATTCAAATTT
Found at i:88748 original size:17 final size:17
Alignment explanation
Indices: 88726--88759 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
88716 TTTTATAAAT
*
88726 TTAATTTAA-TATTTAA
1 TTAAATTAATTATTTAA
88742 TTAAATTAATTATTTAA
1 TTAAATTAATTATTTAA
88759 T
1 T
88760 ACTATCCTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TTAAATTAATTATTTAA
Found at i:88826 original size:16 final size:16
Alignment explanation
Indices: 88805--88871 Score: 59
Period size: 16 Copynumber: 4.2 Consensus size: 16
88795 TATAAATTTG
88805 TAATATATATAATAAT
1 TAATATATATAATAAT
*
88821 TAATATAATATTATAA-
1 TAATAT-ATATAATAAT
*
88837 TAATA-ATATAATTGAT
1 TAATATATATAA-TAAT
* *
88853 TAATAT-TCTAAAAAT
1 TAATATATATAATAAT
88868 TAAT
1 TAAT
88872 GGGTAAGAGA
Statistics
Matches: 41, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
14 5 0.12
15 8 0.20
16 20 0.49
17 8 0.20
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (16 bp):
TAATATATATAATAAT
Found at i:88843 original size:19 final size:21
Alignment explanation
Indices: 88805--88848 Score: 74
Period size: 19 Copynumber: 2.2 Consensus size: 21
88795 TATAAATTTG
88805 TAATATATATAATAATTAATA
1 TAATATATATAATAATTAATA
88826 TAATAT-TATAATAA-TAATA
1 TAATATATATAATAATTAATA
88845 TAAT
1 TAAT
88849 TGATTAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 9 0.39
20 8 0.35
21 6 0.26
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (21 bp):
TAATATATATAATAATTAATA
Found at i:89942 original size:176 final size:177
Alignment explanation
Indices: 88833--90079 Score: 976
Period size: 181 Copynumber: 7.0 Consensus size: 177
88823 ATATAATATT
* *
88833 ATAATAATAATA-TAATTGATTAATA-TTCTAAAAATTAATGGGTAAGAGATTTTAAAAAATTAA
1 ATAA-AATAATACTAATTTATTAATATTTC-AAAAATTAA----TAAGAGA-TTTAAAAAATAAA
* * * * *
88896 TCTATTTACTGAACAACTTTAAATAGTGATGACTATTTGAACAATTATCTAATTCAAATCGTTAT
59 TCTATTTACTGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTAT
* * **
88961 GACCTTTTGTTTTGTCATAAAACAATTGTTTTTGTTCATACAAGCTTAATT-TGA
124 GACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTT-ATTCAAA
* * * * *
89015 ATAAAATAAT--TAAATTAATTAATATTCCAAAATTTAATAAGTAAAAATTTTAAAAAT-AAT-T
1 ATAAAATAATACT-AATTTATTAATATTTCAAAAATTAATAAG---AGATTTAAAAAATAAATCT
* * * * * * *
89076 -TTT-TTGAACATGTTCGAATAGTTCTAACTATTTGAACAATTATTTATTTCAAAT-AGTTTTGA
62 ATTTACTGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA-TTATGA
* * * * **
89138 CCTTTTGTTTTGTGATAAACCAATTATTTCTATCCATACAAGCTTATTCCGA
126 CCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTCAAA
* ** * *
89190 ATAAAATAAT--TAAATTTATTAATATTCCAAATTTTAATAAGTAAAAATTTAAAAAATAAATTT
1 ATAAAATAATACT-AATTTATTAATATTTCAAAAATTAATAAG---AGATTTAAAAAATAAATCT
* ** * * * * *
89253 GTTTTTTGAACATGTTCAAATAGATCTAACTATTTGAATAATTATCTATTTCAAA-CAGTTATGA
62 ATTTACTGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA-TTATGA
* * * * ** * * *
89317 CCTTTTG-CTTGTGATGAACCAATCATTTCT-GTCTATATAAGGTTATTCAAA
126 CCTTTTGTTTTGTCATAAAACAATTGTTTCTATTC-ATACAAGCTTATTCAAA
* *
89368 ATAAAATAATACTAATTTAATAATATTAT-AAACAATTAATAAGTAAAAGATTTAAAAACTAAAT
1 ATAAAATAATACTAATTTATTAATATT-TCAAA-AATTAATAAG----AGATTTAAAAAATAAAT
* * * ** * * * * *
89432 CTGTTTAC-CAAGTAAACTCAAATAGTTATAACTGTTTGAACAATTTTTTATTTCTAAT-AGTTA
60 CTATTTACTGAA-CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA-TTA
* * *
89495 TGATCTTTTGTTTTATCATAAAACAATTGTTTCTATTCATACAAGTTTATTCAAA
123 TGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTCAAA
* *** *
89550 ATAAAATAATACTACTTTATTAATATTTTGCAAATTAATAGGTGGGAGATTTAAAAAATAAATCT
1 ATAAAATAATACTAATTTATTAATATTTCAAAAATTAATA----AGAGATTTAAAAAATAAATCT
* ** * * * * * **
89615 GTTTACCAAACAAGTTCAAATAGTCATGTCCATTAGAATAATTATCTATTTCAAATTGTTATGAC
62 ATTTACTGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAC
* * * *
89680 CTTTTTTTTTATCATAAAACAATTGTTTCTGTTCATAC-AGAATTATTCAAA
127 CTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAG-CTTATTCAAA
** * * *
89731 ATAAAATAATTTTGATTTATTAATATTTTAAAAATTAATAAGAGATTTAAAAACTAAATCTATTT
1 ATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGAGATTTAAAAAATAAATCTATTT
* * * * * *
89796 AGTAAACCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATCTCAAATCATAATGATC-TT
66 ACTGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTT
* * *
89860 TATTTTGTCATACAACAATTGTTTCCT-TTCATACAAGCTTATTCATA
131 TGTTTTGTCATAAAACAATTGTTT-CTATTCATACAAGCTTATTCAAA
* * * * *
89907 TTAAAATGATACTAATTTACTAATATTTCAAAAATTAATAAGAAATTTAAAAAATAAATATA-TT
1 ATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGAGATTTAAAAAATAAATCTATTT
* * * ** * *
89971 AGTTGAACTAGTTCAAATAGTTAAGACTATCAGAATAATTATCTATTTCAAATCATTCT-ATCCT
66 A-CTGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGA-CCT
* * *
90035 TATGTTTAGTCATAAAACAATTATTT-TAGTTCATACAAGCTTATT
129 TTTGTTTTGTCATAAAACAATTGTTTCTA-TTCATACAAGCTTATT
90080 TGGAATAAAA
Statistics
Matches: 876, Mismatches: 152, Indels: 79
0.79 0.14 0.07
Matches are distributed among these distances:
174 3 0.00
175 146 0.17
176 144 0.16
177 119 0.14
178 49 0.06
179 85 0.10
180 16 0.02
181 246 0.28
182 65 0.07
183 2 0.00
185 1 0.00
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.41
Consensus pattern (177 bp):
ATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGAGATTTAAAAAATAAATCTATTT
ACTGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTT
TGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTCAAA
Found at i:90090 original size:353 final size:349
Alignment explanation
Indices: 88883--90079 Score: 1005
Period size: 353 Copynumber: 3.4 Consensus size: 349
88873 GGTAAGAGAT
* * * * * * * * * *
88883 TTTAAAAAATTAATCTATTTACTGAACAACTTTAAATAGTGATGACTATTTGAACAATTATCTAA
1 TTTAAAAAATAAATATA-TTATTGAAC-AGTTCAAATAGTTAAGACTATTAGAATAATTATCTAT
* * * *
88948 TTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTGTTCATACAAGCTTAATT-
64 TTCAAATCATTATGACCTTTTGTTTAGTCATAAAACAATTATTTCTGTTCATACAAGCTT-ATTC
** * * ** * *
89012 TGAATAAAATAA-TTAAATTAATTAATATTCCAAAATTTAATAAGTAAAAATTTTAAAAA-T-AA
128 AAAATAAAATAATTTTAATTTATTAATATTATAAAAATTAATAAG--AAGA-TTTAAAAACTAAA
* * * * *
89074 T-TTTT-TTGAACATGTTCGAATAGTTCTAACTATTTGAACAATTATTTATTTCAAATAGTTTTG
190 TCTTTTACTAAACA-GTTCAAATAGTTATAACTATTTGAACAATTATTTATTTCAAATAGTTATG
* * * * ** *
89137 ACCTTTTGTTTTGTGATAAACCAATTATTTCTATCCATACAAGCTTATTCCGAATAAAATA-ATT
254 ATCTTTTGTTTTGTCATAAA-CAATTGTTTCTATTCATACAAGCTTATTCAAAATAAAATATACT
* **
89201 AAATTTATTAATATTCCAAATTTTAATAAGTAAAAA
318 -AATTTATTAATATTTCAAAAATTAATAAG---AAA
* * * *
89237 TTTAAAAAATAAATTTGTTTTTTGAACATGTTCAAATAGATCT-A-ACTATTTGAATAATTATCT
1 TTTAAAAAATAAATAT-ATTATTGAACA-GTTCAAATAG-T-TAAGACTATTAGAATAATTATCT
* * * * * * *
89300 ATTTCAAA-CAGTTATGACCTTTTGCTT-GTGATGAACCAATCATTTCTG-TCTATATAAGGTTA
62 ATTTCAAATCA-TTATGACCTTTTGTTTAGTCATAAAACAATTATTTCTGTTC-ATACAAGCTTA
** *
89362 TTCAAAATAAAATAATACTAATTTAATAATATTATAAACAATTAATAAGTAAAAGATTTAAAAAC
125 TTCAAAATAAAATAATTTTAATTTATTAATATTATAAA-AATTAATAAG---AAGATTTAAAAAC
* ** * * *
89427 TAAATCTGTTTACCAAGTA-AACTCAAATAGTTATAACTGTTTGAACAATTTTTTATTTCTAATA
186 TAAATCT-TTTACTAA--ACAGTTCAAATAGTTATAACTATTTGAACAATTATTTATTTCAAATA
* *
89491 GTTATGATCTTTTGTTTTATCATAAAACAATTGTTTCTATTCATACAAGTTTATTCAAAATAAAA
248 GTTATGATCTTTTGTTTTGTCAT-AAACAATTGTTTCTATTCATACAAGCTTATTCAAAATAAAA
* *** * *
89556 TAATACTACTTTATTAATATTTTGCAAATTAATAGGTGGGAGA
312 T-ATACTAATTTATTAATATTTCAAAAATTAATA----AGAAA
* * *** * * * *
89599 TTTAAAAAATAAATCTGTTTACCAAACAAGTTCAAATAGTCATGTCCATTAGAATAATTATCTAT
1 TTTAAAAAATAAATAT-ATTATTGAAC-AGTTCAAATAGTTAAGACTATTAGAATAATTATCTAT
** * * *
89664 TTCAAATTGTTATGACCTTTTTTTTTA-TCATAAAACAATTGTTTCTGTTCATAC-AGAATTATT
64 TTCAAATCATTATGACC-TTTTGTTTAGTCATAAAACAATTATTTCTGTTCATACAAG-CTTATT
* *
89727 CAAAATAAAATAATTTTGATTTATTAATATTTTAAAAATTAATAAG-AGATTTAAAAACTAAATC
127 CAAAATAAAATAATTTTAATTTATTAATATTATAAAAATTAATAAGAAGATTTAAAAACTAAATC
* * * * *
89791 TATTTAGTAAACCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATCTCAAATCA-TAATG
192 T-TTTACTAAA-CAGTTCAAATAGTTATAACTATTTGAACAATTATTTATTTCAAAT-AGTTATG
* * *
89855 ATC-TTTATTTTGTCATACAACAATTGTTTCCT-TTCATACAAGCTTATTCATATTAAAATGATA
254 ATCTTTTGTTTTGTCATA-AACAATTGTTT-CTATTCATACAAGCTTATTCAAAATAAAAT-ATA
*
89918 CTAATTTACTAATATTTCAAAAATTAATAAGAAA
316 CTAATTTATTAATATTTCAAAAATTAATAAGAAA
*
89952 TTTAAAAAATAAATATATTAGTTGAACTAGTTCAAATAGTTAAGACTATCAGAATAATTATCTAT
1 TTTAAAAAATAAATATATTA-TTGAAC-AGTTCAAATAGTTAAGACTATTAGAATAATTATCTAT
* *
90017 TTCAAATCATTCT-ATCCTTATGTTTAGTCATAAAACAATTATTT-TAGTTCATACAAGCTTATT
64 TTCAAATCATTATGA-CCTTTTGTTTAGTCATAAAACAATTATTTCT-GTTCATACAAGCTTATT
90080 TGGAATAAAA
Statistics
Matches: 670, Mismatches: 131, Indels: 85
0.76 0.15 0.10
Matches are distributed among these distances:
352 17 0.03
353 129 0.19
354 86 0.13
355 18 0.03
356 7 0.01
357 76 0.11
358 71 0.11
359 4 0.01
360 91 0.14
361 26 0.04
362 81 0.12
363 61 0.09
364 2 0.00
365 1 0.00
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.41
Consensus pattern (349 bp):
TTTAAAAAATAAATATATTATTGAACAGTTCAAATAGTTAAGACTATTAGAATAATTATCTATTT
CAAATCATTATGACCTTTTGTTTAGTCATAAAACAATTATTTCTGTTCATACAAGCTTATTCAAA
ATAAAATAATTTTAATTTATTAATATTATAAAAATTAATAAGAAGATTTAAAAACTAAATCTTTT
ACTAAACAGTTCAAATAGTTATAACTATTTGAACAATTATTTATTTCAAATAGTTATGATCTTTT
GTTTTGTCATAAACAATTGTTTCTATTCATACAAGCTTATTCAAAATAAAATATACTAATTTATT
AATATTTCAAAAATTAATAAGAAA
Done.