Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168498.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_95, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 90895
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
File 1 of 3
Found at i:758 original size:181 final size:180
Alignment explanation
Indices: 39--1195 Score: 800
Period size: 181 Copynumber: 6.4 Consensus size: 180
29 TTAATGTTCC
* ** * * * *
39 AAAACCAATTGTTT-ATATTCATACAAAATTATTCAAAATAAAATAATACTATTTTATTACTTTT
1 AAAA-CAATTGTTTCA-GTTCATACAAGCTTATTCGAAATAAAATAATACTA-ATTATTAATATT
* * * * * * *
103 TTGAAAATTAAT-A---AGAGATTTAAAAACTAAATCTCTTTACCTAA-CTAGTTCAAATAGTTA
63 ATAAAAATTAATAAGTTAGAGATTTAAAAAATAAATTTGTTTATCGAATC-AGTTCAAATAGTTA
* * * * * ** * *
163 TGACTATTTGAACAATTATTTATCTCCAATTGTTATG-ATTTTTGTTTTGTCCT
127 TGGCTATTTGAAAAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCAT
* * * * * * * *
216 AAAACATTTAATTTTTA-TTCA-ACAAGCTTATT-TAGAGTAAAATATTTCTAAATTAATAATAT
1 AAAACAATT--GTTTCAGTTCATACAAGCTTATTCGA-AATAAAATAATACT-AATTATTAATAT
* * * * * *
278 TCTAAACATTAATAAGTAAG-GATTTAAAAAATAAATGTGTTT-GCTAAATCAGTTCAAATAGTT
62 TATAAAAATTAATAAGTTAGAGATTTAAAAAATAAATTTGTTTATC-GAATCAGTTCAAATAGTT
* * * * * ** * * * *
341 AAGACTATTAGAATAATTATCTACTTCAAATTGTTTTGACCTTTTATTTAGTCAT
126 ATGGCTATTTGAAAAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCAT
* * ** * * *
396 AAAATAATTGCTTCAACTCATACATGCTTATTCAAAATAAAATAATACTAATTTATTAACATTCA
1 AAAACAATTGTTTCAGTTCATACAAGCTTATTCGAAATAAAATAATACTAA-TTATTAATATT-A
* * * * * * * * * * *
461 -GAAAATTATTAAGTAAGA-AATTAGAAAA-AAATCTATTTACCAAATAAGTTCAAATA-TTTTC
64 TAAAAATTAATAAGTTAGAGATTTAAAAAATAAATTTGTTTATCGAATCAGTTCAAATAGTTAT-
* * * * * * * *
522 GACTATTTGAACAGTTATCTATTTAAAATCATTATGACCTTATATTTTATCAT
128 GGCTATTTGAAAAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCAT
* * * * * *
575 AAAATAATTGTTTCAGTTCATAAAAGCTTA-TCTAAAATAAAATAACATTACCTTATTAATATTA
1 AAAACAATTGTTTCAGTTCATACAAGCTTATTC-GAAATAAAATAATACTA-ATTATTAATATTA
* * * * *
639 TAAAAATTGATAAGTTAGAGATTTAAAACATAAATTAGTTTATCGAATTAGTTCAAATAATTATG
64 TAAAAATTAATAAGTTAGAGATTTAAAAAATAAATTTGTTTATCGAATCAGTTCAAATAGTTATG
* * *
704 GCCATTTAAAAAATTATCTATTTCAAATCATTATGAACTTTTTTTTTGTCAT
129 GCTATTTGAAAAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCAT
* *
756 AAAACAATTGTTTTTCA--TCATACAAGCCTATTCGGAATAAAATAATACTAATTTATTAATATT
1 AAAACAATTG--TTTCAGTTCATACAAGCTTATTCGAAATAAAATAATACTAA-TTATTAATATT
*
819 -TAAAAAATTAATAAG-TAGGAGATTTAAAAAAAAAATTTGTTTATCGAATCAGTTCAAATAGTT
63 AT-AAAAATTAATAAGTTA-GAGATTTAAAAAATAAATTTGTTTATCGAATCAGTTCAAATAGTT
** * * *
882 ATTACTATTTGAACAATTATATATTTTC-AATCGTTAT-AACCTTTTGTTTTGTCAT
126 ATGGCTATTTGAAAAATTATCTA-TTTCAAATCATTATGAA-CTTTTGTTTTGTCAT
* * * * *
937 AAAACAATTATTT-ATCTTCATACAAGCTTATTCGAAATAAAACAATACTAATCTAGTAACATTA
1 AAAACAATTGTTTCA-GTTCATACAAGCTTATTCGAAATAAAATAATACTAAT-TATTAATATTA
* * * * * * * * *
1001 TGAAATTTAATAA-TTGATAGATTTAAAAAATAAATTTGTTTACCTAACCAATTTAAATAGTTAA
64 TAAAAATTAATAAGTT-AGAGATTTAAAAAATAAATTTGTTTATCGAATCAGTTCAAATAGTTAT
* * * *
1065 GGCTATGTGAATAATTATCTATTCCAAATCATTATGACCTTTTGTTTTGTCAT
128 GGCTATTTGAAAAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCAT
* ** * * * * *
1118 AAAACAAATGTTTTTGTTCATATAAGTTTGTTCGAAATACAATAATATTAATTTATTAATATT-T
1 AAAACAATTGTTTCAGTTCATACAAGCTTATTCGAAATAAAATAATACTAA-TTATTAATATTAT
1182 CAAAAATTAATAAG
65 -AAAAATTAATAAG
1196 AGATTTAATA
Statistics
Matches: 771, Mismatches: 162, Indels: 89
0.75 0.16 0.09
Matches are distributed among these distances:
175 1 0.00
176 41 0.05
177 10 0.01
178 13 0.02
179 201 0.26
180 91 0.12
181 396 0.51
182 13 0.02
183 5 0.01
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.40
Consensus pattern (180 bp):
AAAACAATTGTTTCAGTTCATACAAGCTTATTCGAAATAAAATAATACTAATTATTAATATTATA
AAAATTAATAAGTTAGAGATTTAAAAAATAAATTTGTTTATCGAATCAGTTCAAATAGTTATGGC
TATTTGAAAAATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCAT
Found at i:1083 original size:362 final size:357
Alignment explanation
Indices: 39--1254 Score: 1045
Period size: 362 Copynumber: 3.4 Consensus size: 357
29 TTAATGTTCC
* ** * * * *
39 AAAACCAATTGTTTAT-ATTCATACAAAATTATTCAAAATAAAATAATACTATTTTATTACTTTT
1 AAAA-CAATTGTTTTTCA-TCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATT
** ** * *
103 TTGAAAATTAAT-A--AGAGATTTAAAAACTAAATCTCTTTACCTAA-CTAGTTCAAATAGTTAT
64 TAAAAAATTAATAAGTAGAGATTTAAAAAAAAAATCTATTTACCAAATC-AGTTCAAATAGTTAT
* * * * * * * *
164 GACTATTTGAACAATTATTTATCTCCAATTGTTATGA-TTTTTGTTTTGTCCTAAAACATTTAAT
128 TACTATTTGAACAATTATATATTTACAATCGTTATGACCTTTTGTTTTGTCATAAAACAATT-AT
* * * * * * *
228 TTTTATTCA-ACAAGCTTATTTAGAGTAAAATATTTCTAAAT-TAATAATATTCTAAACATTAAT
192 TTATATTCATACAAGCTTATTCAAAATAAAATAATACT-AATCTAATAATATTATAAA-ATTAAT
* * * *
291 AAGTAAGGATTTAAAAAATAAATGTGTTT-GCTAAATCAGTTCAAATAGTTAAGACTATTAGAAT
255 AATTAA-GATTTAAAAAATAAATTTGTTTACCT-AATCAGTTCAAATAGTTAAGGCTATT-GAAT
* ** * *
355 AATTATCTACTTCAAATTGTTTTGACCTTTTATTTAGTCAT
317 AATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCAT
* * * * *
396 AAAATAATTG--CTTCAACTCATACATGCTTATTCAAAATAAAATAATACTAATTTATTAACATT
1 AAAACAATTGTTTTTC-A-TCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATT
* * * * * *
459 CAGAAAATTATTAAGTA-AGAAATT-AGAAAAAAATCTATTTACCAAATAAGTTCAAATA-TT-T
64 TAAAAAATTAATAAGTAGAG-ATTTAAAAAAAAAATCTATTTACCAAATCAGTTCAAATAGTTAT
* * * * * * * * *
520 TCGACTATTTGAACAGTTATCTATTTAAAATCATTATGACCTTATATTTTATCATAAAATAATTG
128 T--ACTATTTGAACAATTATATATTTACAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTA
* * * * * *
585 TTTCA-GTTCATAAAAGCTTA-TCTAAAATAAAATAACA-TTACCTTATTAATATTATAAAAATT
191 TTT-ATATTCATACAAGCTTATTC-AAAATAAAATAATACTAATC-TAATAATATTAT-AAAATT
* * * * * * * * * *
647 GATAAGTTAGAGATTTAAAACATAAATTAGTTTATCGAATTAGTTCAAATAATTATGGCCATTTA
252 AATAA-TTA-AGATTTAAAAAATAAATTTGTTTACCTAATCAGTTCAAATAGTTAAGGCTA-TTG
* * *
712 AAAAATTATCTATTTCAAATCATTATGAACTTTTTTTTTGTCAT
314 AATAATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCAT
* *
756 AAAACAATTGTTTTTCATCATACAAGCCTATTCGGAATAAAATAATACTAATTTATTAATATTTA
1 AAAACAATTGTTTTTCATCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTA
* * * *
821 AAAAATTAATAAGTAGGAGATTTAAAAAAAAAATTTGTTTATCGAATCAGTTCAAATAGTTATTA
66 AAAAATTAATAAGTA-GAGATTTAAAAAAAAAATCTATTTACCAAATCAGTTCAAATAGTTATTA
* *
886 CTATTTGAACAATTATATATTTTCAATCGTTATAACCTTTTGTTTTGTCATAAAACAATTATTTA
130 CTATTTGAACAATTATATATTTACAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTA
* * * * * *
951 TCTTCATACAAGCTTATTCGAAATAAAACAATACTAATCTAGTAACATTATGAAATTTAATAATT
195 TATTCATACAAGCTTATTCAAAATAAAATAATACTAATCTAATAATATTAT-AAAATTAATAATT
* * *
1016 GATAGATTTAAAAAATAAATTTGTTTACCTAACCAATTTAAATAGTTAAGGCTATGTGAATAATT
259 -A-AGATTTAAAAAATAAATTTGTTTACCTAATCAGTTCAAATAGTTAAGGCTAT-TGAATAATT
* *
1081 ATCTATTCCAAATCATTATGACCTTTTGTTTTGTCAT
321 ATCTATTTCAAATCATTATGACCTTTTATTTTGTCAT
* ** * * * * * *
1118 AAAACAAATGTTTTTGTTCATATAAGTTTGTTCGAAATACAATAATATTAATTTATTAATATTTC
1 AAAACAATTGTTTTTCATCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTA
* * * * *
1183 AAAAATTAAT-A--AGAGATTTAATAAATAAATCTATTTACCATA-CTAGTTCAATTAGTTATAA
66 AAAAATTAATAAGTAGAGATTTAAAAAAAAAATCTATTTACCAAATC-AGTTCAAATAGTTATTA
*
1244 CAATTTGAACA
130 CTATTTGAACA
1255 TTTTTTTATT
Statistics
Matches: 677, Mismatches: 149, Indels: 65
0.76 0.17 0.07
Matches are distributed among these distances:
354 1 0.00
356 55 0.08
357 9 0.01
358 115 0.17
359 56 0.08
360 143 0.21
361 13 0.02
362 276 0.41
363 7 0.01
364 2 0.00
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.40
Consensus pattern (357 bp):
AAAACAATTGTTTTTCATCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTA
AAAAATTAATAAGTAGAGATTTAAAAAAAAAATCTATTTACCAAATCAGTTCAAATAGTTATTAC
TATTTGAACAATTATATATTTACAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTAT
ATTCATACAAGCTTATTCAAAATAAAATAATACTAATCTAATAATATTATAAAATTAATAATTAA
GATTTAAAAAATAAATTTGTTTACCTAATCAGTTCAAATAGTTAAGGCTATTGAATAATTATCTA
TTTCAAATCATTATGACCTTTTATTTTGTCAT
Found at i:2152 original size:181 final size:179
Alignment explanation
Indices: 1548--2228 Score: 550
Period size: 181 Copynumber: 3.8 Consensus size: 179
1538 TATTTAAAGA
* * * * *
1548 TTTGCTTT-GTCATAAAACAATTGTTTTTGTTAATATAAGTTTGTTT-GAAATAAAATAATATTA
1 TTTG-TTTAGTCATAAAACAATTG-TTTAGTTCATACAAGTTTATTTAG-AATAAAATAATACTA
* * * * *
1611 TTTTATTAATATTTAGAAAATAAATCTA-TAAGAGATTTAAAAAGA-AAATCTGCTTACCAAACC
63 ATTTAATAATATTTAGAAAATTAAT-AAGTAAGAGATTTAAAAA-ATAAATCTGTTTACCAAACC
* *** * * * *
1674 ATTTCAAATAGTTTTGACTATTTTAATAATTATTTATTTCAAATCATTATAACCTTT
126 AATTCAAATAGTTAAAATTA-TTGAATAATTATCTATTTCAAATCATTATGA--TTT
* * * *
1731 TAT-TTTA-TCATCAAACAATTAG-TTATGTTCATACTATTTTATTTAGAATAAAATAATACTAA
1 TTTGTTTAGTCATAAAACAATT-GTTTA-GTTCATACAAGTTTATTTAGAATAAAATAATACTAA
* * ** * * ** **** *
1793 TTTAATAATATTTCGAAACTTAATAACCAAGAAAATTAAAAAATAAAATCTAATTGTTGAACCAG
64 TTTAATAATATTTAGAAAATTAATAAGTAAGAGATTTAAAAAAT-AAATCTGTTTACCAAACCAA
* * * *
1858 TTCAAATAGTTAAGACTCTA-TGAAGAATTATCTATTTCAAATCGTTATGACTT
128 TTCAAATAGTTAA-AAT-TATTGAATAATTATCTATTTCAAATCATTATGATTT
* ** * * * * * * *
1911 TTTCTTTAAACGTAAAACAATTGTTTTGTTCGTAAAAGCTTATTTGGATTAAAATAATACTAATT
1 TTTGTTTAGTCATAAAACAATTGTTTAGTTCATACAAGTTTATTTAGAATAAAATAATACTAATT
* * * * *
1976 TAACAATATTTTGAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACTAAATCAATTC
66 TAATAATATTTAGAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCAAACCAATTC
* * *
2041 AAATGGTTAAAATTATTAGAATAATTATCTATTTCATATCATTTTGATTT
131 AAATAGTTAAAATTATT-GAATAATTATCTATTTCAAATCATTATGATTT
*
2091 TTTGTTTAGTCATAAAACAATTGTTTCAGTTCATACAAGTTTATTTAGAATAAATTAATACTAAT
1 TTTGTTTAGTCATAAAACAATTGTTT-AGTTCATACAAGTTTATTTAGAATAAAATAATACTAAT
* * * * * * * * *
2156 TTATTAACATGTGGAAAAATTCATATGAAAGAGATTTAAAAAAATAAATTTGTTTACCAAACAAA
65 TTAATAATATTTAG-AAAATTAATAAGTAAGAGATTT-AAAAAATAAATCTGTTTACCAAACCAA
2221 TTCAAATA
128 TTCAAATA
2229 AGTAAGTGAT
Statistics
Matches: 388, Mismatches: 93, Indels: 34
0.75 0.18 0.07
Matches are distributed among these distances:
178 2 0.01
179 3 0.01
180 81 0.21
181 185 0.48
182 82 0.21
183 33 0.09
184 2 0.01
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.40
Consensus pattern (179 bp):
TTTGTTTAGTCATAAAACAATTGTTTAGTTCATACAAGTTTATTTAGAATAAAATAATACTAATT
TAATAATATTTAGAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCAAACCAATTC
AAATAGTTAAAATTATTGAATAATTATCTATTTCAAATCATTATGATTT
Found at i:2723 original size:181 final size:179
Alignment explanation
Indices: 2225--3728 Score: 1156
Period size: 181 Copynumber: 8.4 Consensus size: 179
2215 AACAAATTCA
* * * ** * * * * *
2225 AATAAGTAAGTGATTTAAAAAGTGAATATGTTTACTAAATTAGTTCAAATAATTATGGCCATTTT
1 AATAAGTAAGAGATTTAAAAAATAAAT-TGTTTACCGAACTAGTTCAAATAGTTATGACTATTTG
* * * ** * *
2290 AATAATTATCTATTTCAAATTGTTCTTACCTTTTGTTTAGTCATATGACAATTGTTTTTTA-TCA
65 AATAATTATCTATTTCAAATTGTTATAACCTTTTGTTTTGTCATAAAACAA-TATTTTCTATTCA
* * * *
2354 TACAAGCTTATTCGAAATAAAATAATACGAATTTATTAATCTTTCAAAAATT
129 TACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTT-GAAAATT
** * *
2406 AATAAGTAAGAGATTTAAAAAATAAATCTG--T-CAAAACTAATTCAAATAGTTATGACTATTAG
1 AATAAGTAAGAGATTTAAAAAATAAAT-TGTTTACCGAACTAGTTCAAATAGTTATGACTATTTG
** * * * * *
2468 AGCAATTGTATACTTCAAATTATTATAACCTTTTGTTTTGTCATAAAACAATTATTTT-TATTTA
65 AATAATTATCTATTTCAAATTGTTATAACCTTTTGTTTTGTCATAAAACAA-TATTTTCTATTCA
* * **
2532 TACAAGCTTATTTGAAATAAAATAAAACTAATCTAACAATATTCTGAAAATT
129 TACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATT-TGAAAATT
* * * ** *
2584 AATAACTAAGAGATTTAAAAAATAAAATTATTTGCCGAACTAGTTCAAATAGTTAAAACTATATG
1 AATAAGTAAGAGATTTAAAAAAT-AAATTGTTTACCGAACTAGTTCAAATAGTTATGACTATTTG
** *
2649 AATAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAATATTTTCAATTCAT
65 AATAATTATCTATTTCAAATTGTTATAACCTTTTGTTTTGTCATAAAACAATATTTTCTATTCAT
* * * *
2714 ACTAGCTTATTT-AGAATAAAATAA-AATAAATTTATTAAAATTTCAAAAATT
130 ACAAGCTTATTTGA-AATAAAATAATACT-AATTTATTAATATTT-GAAAATT
* * * ** * * *
2765 AATAGGTAAGAGAATTAAAAAATAATTATGTTTTTCTAACTAGTTCAAATAATGATGACTATTTG
1 AATAAGTAAGAGATTTAAAAAATAAAT-TGTTTACCGAACTAGTTCAAATAGTTATGACTATTTG
* * *
2830 AATAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACTAATGTTTT-TGTTCA
65 AATAATTATCTATTTCAAATTGTTATAACCTTTTGTTTTGTCATAAAAC-AATATTTTCTATTCA
* * * ** * *
2894 TATAAGTTTGTTCAAAATAAAATAATACTAATCT-TTAATATTTCAAAAATT
129 TACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTT-GAAAATT
* * * * * *
2945 AATAA--AA-A-TTTTAAAAAATAAATTGCTTATCAAACTGGTTC-AA-A-TTAAGACTATTT-A
1 AATAAGTAAGAGATTTAAAAAATAAATTGTTTACCGAACTAGTTCAAATAGTTATGACTATTTGA
* * * * * * * * *
3002 AGCAATTATTTATTTCAAATCGTTATGAA-TTTTTG-TTTGTTATAAGATAATAGTTTCTATTTA
66 A-TAATTATCTATTTCAAATTGTTAT-AACCTTTTGTTTTGTCATAAAACAATATTTTCTATTCA
* * * *
3065 TTCAAGCTTATTTGGAGTAAAATAATACAAATTTATTAATATTTTGACAAA-T
129 TACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATA-TTTGA-AAATT
* * * * * * *
3117 AATAAGTGAA-AAATGTAAAAAATAAAATATGTTTACTGAACTAGATCAAACAATCATGACTATT
1 AATAAGT-AAGAGATTTAAAAAAT-AAAT-TGTTTACCGAACTAGTTCAAATAGTTATGACTATT
* * * * * * *
3181 TGAATAGTTATCTATTTCAAATTGTTATGACCTTTTCTTCTATCATAAAAAAAT-TATTTCAATT
63 TGAATAATTATCTATTTCAAATTGTTATAACCTTTTGTTTTGTCATAAAACAATAT-TTTCTATT
* * * *
3245 CATATAAGCTTATTCGAAATAAAATAATATTAAGTTATTAATATTTTGAAAATT
127 CATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATA-TTTGAAAATT
* * * ** * * * * * *
3299 AATAATTAAGAGATTTAAAAAATGAATCTATTTACTAAACAAATTTAAATAATTATAATTATTTG
1 AATAAGTAAGAGATTTAAAAAATAAAT-TGTTTACCGAACTAGTTCAAATAGTTATGACTATTTG
* * ** * * * ** * *
3364 AACAATTATTTATTGGAAATCGCTATAACCTTTTGCTTTGTCATAAAATGATTTTTTCTATTTAT
65 AATAATTATCTATTTCAAATTGTTATAACCTTTTGTTTTGTCATAAAACAATATTTTCTATTCAT
* * * * *
3429 GCAAGCTTATTTTG-AATAAAATAATACAAATTTATTAA-ATTAAGACAACT
130 ACAAGCTTA-TTTGAAATAAAATAATACTAATTTATTAATATT-TGAAAATT
* ** * *
3479 AATAAGTAAAAGATTT-AAAAATAAATTTGTTTATTGAACAAGTTCAAATCGTTATGACTATTTG
1 AATAAGTAAGAGATTTAAAAAATAAA-TTGTTTACCGAACTAGTTCAAATAGTTATGACTATTTG
* * * * * * *
3543 AACAATTATTTATTTCAAATTGTTATGACTTTTTATTTTGTCATAAAATAAT-TGCTTT-TGTTC
65 AATAATTATCTATTTCAAATTGTTATAACCTTTTGTTTTGTCATAAAACAATAT--TTTCTATTC
* * *
3606 ATACTAGCTTATTT-AGAATAAAATAATATTAATTTATTAATATTTCGACAATT
128 ATACAAGCTTATTTGA-AATAAAATAATACTAATTTATTAATATTT-GAAAATT
* * * * * * *
3659 TATAAGTAAAAGATTTAAAAAATAAATATGTTTGCCGAACAAATTCAAATAGTCATAACTATTTG
1 AATAAGTAAGAGATTTAAAAAATAAAT-TGTTTACCGAACTAGTTCAAATAGTTATGACTATTTG
3724 AATAA
65 AATAA
3729 AGAGTAACAG
Statistics
Matches: 1048, Mismatches: 228, Indels: 94
0.76 0.17 0.07
Matches are distributed among these distances:
170 6 0.01
171 40 0.04
172 49 0.05
173 8 0.01
174 2 0.00
175 17 0.02
176 21 0.02
177 7 0.01
178 154 0.15
179 123 0.12
180 85 0.08
181 444 0.42
182 92 0.09
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.40
Consensus pattern (179 bp):
AATAAGTAAGAGATTTAAAAAATAAATTGTTTACCGAACTAGTTCAAATAGTTATGACTATTTGA
ATAATTATCTATTTCAAATTGTTATAACCTTTTGTTTTGTCATAAAACAATATTTTCTATTCATA
CAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTGAAAATT
Found at i:3269 original size:534 final size:533
Alignment explanation
Indices: 2225--3728 Score: 1438
Period size: 534 Copynumber: 2.8 Consensus size: 533
2215 AACAAATTCA
* * * * * * * * *
2225 AATAAGTAAGTGATTTAAAAAGTGAATATGTTTACTAAATTAGTTCAAATAATTATGGCCATTTT
1 AATAAGTAAGAGAATTAAAAAATGAATCTATTTACTAAACTAGTTCAAATAATTATGACTATTTG
* * * **
2290 AATAATTATCTATTTCAAATTGTTCTTACCTTTTGTTTAGTCATATGAC-AATTGTTTTTTATCA
66 AATAATTATCTATTTCAAATTGTTATAACCTTTTGTTTTGTCATAAAACTAA-TGTTTTTT-TCA
* * *
2354 TACAAGCTTATTCGAAATAAAATAATACGAATTTATTAATCTTTCAAAAATTAATAAGTAAGAGA
129 TACAAGCTTATTCAAAATAAAATAATACAAATTTATTAATATTTCAAAAATTAAT-A--AA-AGA
* * * *
2419 TTTAAAAAATAAA-T-C-TGTCAAAACTAATTCAAATAGTTATGACTA-TTAGAGCAATTGTATA
190 TTTAAAAAATAAATTGCTTATC-AAACTAGTTC-AA-AGTTATGACTATTTA-AGCAATTATTTA
* * * * *
2480 CTTCAAATTATTAT-AACCTTTTGTTTTGTCATAAAACAATTATTTTTATTTATACAAGCTTATT
251 TTTCAAATTGTTATGAA-TTTTTG-TTTGTCATAAAATAA-TAGTTTTATTTATACAAGCTTATT
* * * ** * * *
2544 TGAAATAAAATAAAACTAATCTAACAATATTCTGA-AAATTAATAACTAAGAGATTTAAAAAATA
313 TGGAATAAAATAATACTAATTTATTAATATTTTGACAAA-TAATAAGTAA-AAATTTAAAAAATA
* * * * *
2608 AAAT-TATTTGCCGAACTAGTTCAAATAGTTAAAACTATATGAATAATTATCTATTTCAAATCAT
376 AAATATGTTTGCCGAACTAGATCAAATAGTCATAACTATTTGAATAATTATCTATTTCAAATCAT
* * * * *
2672 TATAACCTTTTGTTTTGTCATAAAACAATATTTTCAATTCATACTAGCTTATTTAGAATAAAATA
441 TATAACCTTTTCTTCTATCATAAAAAAATATTTTCAATTCATACTAGCTTATTGAGAATAAAATA
*
2737 AAATAAATTTATTAAAATTTCAAAAATT
506 AAATAAAGTTATTAAAATTTCAAAAATT
* * *
2765 AATAGGTAAGAGAATTAAAAAAT-AAT-TATGTTTTTCT-AACTAGTTCAAATAATGATGACTAT
1 AATAAGTAAGAGAATTAAAAAATGAATCTA---TTTACTAAACTAGTTCAAATAATTATGACTAT
*
2827 TTGAATAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACTAATGTTTTTGTT
63 TTGAATAATTATCTATTTCAAATTGTTATAACCTTTTGTTTTGTCATAAAACTAATGTTTTT-TT
* * * * *
2892 CATATAAGTTTGTTCAAAATAAAATAATACTAATCT-TTAATATTTCAAAAATTAATAAAA-ATT
127 CATACAAGCTTATTCAAAATAAAATAATACAAATTTATTAATATTTCAAAAATTAATAAAAGA-T
* *
2955 TTAAAAAATAAATTGCTTATCAAACTGGTTCAAA-TTAAGACTATTTAAGCAATTATTTATTTCA
191 TTAAAAAATAAATTGCTTATCAAACTAGTTCAAAGTTATGACTATTTAAGCAATTATTTATTTCA
* * * * *
3019 AATCGTTATGAATTTTTGTTTGTTATAAGATAATAGTTTCTATTTATTCAAGCTTATTTGGAGTA
256 AATTGTTATGAATTTTTGTTTGTCATAAAATAATAGTTT-TATTTATACAAGCTTATTTGGAATA
* *
3084 AAATAATACAAATTTATTAATATTTTGACAAATAATAAGTGAAAAATGTAAAAAATAAAATATGT
320 AAATAATACTAATTTATTAATATTTTGACAAATAATAAGT-AAAAATTTAAAAAATAAAATATGT
* * * * * * ** *
3149 TTACTGAACTAGATCAAACAATCATGACTATTTGAATAGTTATCTATTTCAAATTGTTATGACCT
384 TTGCCGAACTAGATCAAATAGTCATAACTATTTGAATAATTATCTATTTCAAATCATTATAACCT
* *
3214 TTTCTTCTATCATAAAAAAAT-TATTTCAATTCATA-TAAGCTTATTCGA-AATAAAATAATATT
449 TTTCTTCTATCATAAAAAAATAT-TTTCAATTCATACT-AGCTTATT-GAGAATAAAATAAAATA
* **
3276 AAGTTATTAATATTTTGAAAATT
511 AAGTTATTAAAATTTCAAAAATT
* * * * * * *
3299 AATAATTAAGAGATTTAAAAAATGAATCTATTTACTAAACAAATTTAAATAATTATAATTATTTG
1 AATAAGTAAGAGAATTAAAAAATGAATCTATTTACTAAACTAGTTCAAATAATTATGACTATTTG
* * ** * * * * * *
3364 AACAATTATTTATTGGAAATCGCTATAACCTTTTGCTTTGTCATAAAA-TGATTTTTTCTATTTA
66 AATAATTATCTATTTCAAATTGTTATAACCTTTTGTTTTGTCATAAAACTAATGTTTT-T-TTCA
* ***
3428 TGCAAGCTTATTTTGAATAAAATAATACAAATTTATTAA-A-TT-AAGACAACTAATAAGTAAAA
129 TACAAGCTTATTCAAAATAAAATAATACAAATTTATTAATATTTCAA-A-AA-T--TAA-TAAAA
* ** *
3490 GATTT-AAAAATAAATTTGTTTATTGAACAAGTTCAAATCGTTATGACTATTTGAA-CAATTATT
188 GATTTAAAAAATAAA-TTGCTTATCAAACTAGTTCAAA--GTTATGACTATTT-AAGCAATTATT
* * * * * *
3553 TATTTCAAATTGTTATGACTTTTTATTTTGTCATAAAATAATTGCTTTTGTTCATACTAGCTTAT
249 TATTTCAAATTGTTATGAATTTTT-GTTTGTCATAAAATAATAG-TTTTATTTATACAAGCTTAT
* * * * *
3618 TTAGAATAAAATAATATTAATTTATTAATATTTCGACAATTTATAAGTAAAAGATTTAAAAAAT-
312 TTGGAATAAAATAATACTAATTTATTAATATTTTGACAAATAATAAGTAAAA-ATTTAAAAAATA
*
3682 AAATATGTTTGCCGAAC-AAATTCAAATAGTCATAACTATTTGAATAA
376 AAATATGTTTGCCGAACTAGA-TCAAATAGTCATAACTATTTGAATAA
3729 AGAGTAACAG
Statistics
Matches: 789, Mismatches: 136, Indels: 77
0.79 0.14 0.08
Matches are distributed among these distances:
532 7 0.01
533 96 0.12
534 276 0.35
535 29 0.04
536 7 0.01
537 21 0.03
538 30 0.04
539 23 0.03
540 126 0.16
541 90 0.11
542 81 0.10
543 3 0.00
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.40
Consensus pattern (533 bp):
AATAAGTAAGAGAATTAAAAAATGAATCTATTTACTAAACTAGTTCAAATAATTATGACTATTTG
AATAATTATCTATTTCAAATTGTTATAACCTTTTGTTTTGTCATAAAACTAATGTTTTTTTCATA
CAAGCTTATTCAAAATAAAATAATACAAATTTATTAATATTTCAAAAATTAATAAAAGATTTAAA
AAATAAATTGCTTATCAAACTAGTTCAAAGTTATGACTATTTAAGCAATTATTTATTTCAAATTG
TTATGAATTTTTGTTTGTCATAAAATAATAGTTTTATTTATACAAGCTTATTTGGAATAAAATAA
TACTAATTTATTAATATTTTGACAAATAATAAGTAAAAATTTAAAAAATAAAATATGTTTGCCGA
ACTAGATCAAATAGTCATAACTATTTGAATAATTATCTATTTCAAATCATTATAACCTTTTCTTC
TATCATAAAAAAATATTTTCAATTCATACTAGCTTATTGAGAATAAAATAAAATAAAGTTATTAA
AATTTCAAAAATT
Found at i:4138 original size:161 final size:161
Alignment explanation
Indices: 3938--4250 Score: 405
Period size: 161 Copynumber: 1.9 Consensus size: 161
3928 TGTCATAAAA
** * *
3938 CAATTGGTTCTGTTCATGCAAGCATATTTTGAATAAAATAATATAAATTTATTAATATTCCAAAA
1 CAATTGGTTCTGTTCAAACAAGCATATTTGGAATAAAATAATATAAATTAATTAATATTCC-AAA
* * *
4003 ATTAATAAGTAAAA-TTTTAGAAAATAAAGCTATTTTCTAA-ACACATTCAAATAGTTATGACTA
65 ATTAATAAGTAAAAGATTTAAAAAATAAAGCTATTTACTAAGACA-ATTCAAATAGTTATGACTA
4066 TTTGAACAATTATCTATTTCAAATCATTATGAC
129 TTTGAACAATTATCTATTTCAAATCATTATGAC
* * * *
4099 CAATTGTTTCTGTTCAAACAAGCTTATTTGGAATAAAATAATTTTAATTAATTAATATTCCAAAA
1 CAATTGGTTCTGTTCAAACAAGCATATTTGGAATAAAATAATATAAATTAATTAATATTCCAAAA
* ** * ** * * *
4164 TTAGTAAGTAAAAGATTTAAAAAATAAATTTGTTTACTAAGTGAGTTCAAATAGTTATGATTGTT
66 TTAATAAGTAAAAGATTTAAAAAATAAAGCTATTTACTAAGACAATTCAAATAGTTATGACTATT
*
4229 TGAACAATTATTTATTTCAAAT
131 TGAACAATTATCTATTTCAAAT
4251 TGTTATGATT
Statistics
Matches: 129, Mismatches: 21, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
160 16 0.12
161 112 0.87
162 1 0.01
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.39
Consensus pattern (161 bp):
CAATTGGTTCTGTTCAAACAAGCATATTTGGAATAAAATAATATAAATTAATTAATATTCCAAAA
TTAATAAGTAAAAGATTTAAAAAATAAAGCTATTTACTAAGACAATTCAAATAGTTATGACTATT
TGAACAATTATCTATTTCAAATCATTATGAC
Found at i:4356 original size:23 final size:24
Alignment explanation
Indices: 4318--4378 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 24
4308 GGAATAAAAT
4318 AAAATTAATATA-TT-AACATTCT-A
1 AAAATTAATA-AGTTAAACATT-TAA
*
4341 AAAATTAATAAGTTAAAGATTTAA
1 AAAATTAATAAGTTAAACATTTAA
*
4365 AAAATTAATTAGTT
1 AAAATTAATAAGTT
4379 TATATAACCA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
22 1 0.03
23 13 0.39
24 19 0.58
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (24 bp):
AAAATTAATAAGTTAAACATTTAA
Found at i:4414 original size:181 final size:180
Alignment explanation
Indices: 4099--4479 Score: 480
Period size: 181 Copynumber: 2.1 Consensus size: 180
4089 TCATTATGAC
* ** * *
4099 CAATTGTTTCTGTTCAAACAAGCTTATTTGGAATAAAATAATTTTAATTAATTAATATTCCAAAA
1 CAATTGTTTCTGTTCATACAAGCTTATTTGGAATAAAATAAAATTAATTAATTAACATTCAAAAA
* * *** * * **
4164 TTAGTAAGTAAAAGATTTAAAAAATAAATTTGTTTACTAAGTGAGTTCAAATAGTTATGATTGTT
66 TTAATAAGTAAAAGATTTAAAAAATAAATTAGTTTACTAAACCAATTCAAATAGTCATGATCATT
* ** *
4229 TGAACAATTATTTATTTCAAATTGTTATGATTTTTTGTTTTGTTATAAAA
131 TGAACAATTATCTATTTCAAATTGTTATGACATTTTATTTTGTTATAAAA
*
4279 CAATTGTTTCTGTTCATACAAGTTTATTTGGAATAAAATAAAATTAA-TATATTAACATTCTAAA
1 CAATTGTTTCTGTTCATACAAGCTTATTTGGAATAAAATAAAATTAATTA-ATTAACATTC-AAA
* *
4343 AATTAATAAGTTAAAGATTTAAAAAATTAATTAGTTTA-TATAACCAATTCAAATAGTCATG-TC
64 AATTAATAAGTAAAAGATTTAAAAAATAAATTAGTTTACTA-AACCAATTCAAATAGTCATGAT-
* *
4406 CATTTGAACTATTATCTATTTCAAATTGTTATGACATTTTATTTTGTTGTAAAA
127 CATTTGAACAATTATCTATTTCAAATTGTTATGACATTTTATTTTGTTATAAAA
* *
4460 CAATTATTTCTATTCATACA
1 CAATTGTTTCTGTTCATACA
4480 CAATTATTTA
Statistics
Matches: 172, Mismatches: 25, Indels: 7
0.84 0.12 0.03
Matches are distributed among these distances:
179 2 0.01
180 55 0.32
181 115 0.67
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.43
Consensus pattern (180 bp):
CAATTGTTTCTGTTCATACAAGCTTATTTGGAATAAAATAAAATTAATTAATTAACATTCAAAAA
TTAATAAGTAAAAGATTTAAAAAATAAATTAGTTTACTAAACCAATTCAAATAGTCATGATCATT
TGAACAATTATCTATTTCAAATTGTTATGACATTTTATTTTGTTATAAAA
Found at i:4809 original size:180 final size:180
Alignment explanation
Indices: 4528--5619 Score: 751
Period size: 180 Copynumber: 6.1 Consensus size: 180
4518 CAGTTTAAAG
* * * * *
4528 AGTTATAACTATTTAAACAATTATCTATCTT-AAATCATTA-AGATC-TTTGTTTTGTCCTAAAA
1 AGTTATGACTATTTGAATAATTATCTAT-TTCAAATCATTATA-ACCTTTTGTTTTGTCATAAAA
* * * * * * * * * *
4590 CATTTGTTTCTGTTCATACAAGCTTATTTAGAGTAAAATATTGCTAAGTTAATAATATTCTAAAA
64 CAATTATTTCAGTTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTCTAAAA
* * * *
4655 ATTAATAAGTAAGGATTTAAAAAATAAATGTGTTTGCTGATCCAGTTCAAAT
129 ATTAATAAGTAAGGATTTAAAAAATAAATTTGTTTACTGAACCAATTCAAAT
* * * * *
4707 AGTTAAGACTATTAGAATAATTATCTATTTCAAATCATTCTAACCTTTTGTTTAGTCATAAAATA
1 AGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACA
* *
4772 ATTATTTCAGTTCATACATGCTTATTCAAAATAAAATAATACTAATTTATTAACATTC-ATAAAA
66 ATTATTTCAGTTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTCTA-AAAA
* * * *
4836 TTAATAAGCAAGAAATTTTAAAAAAAATAAATTTGTTTAC-CAAACAAGTTCAAAT
130 TTAATAAGTAAG-GA-TTT--AAAAAATAAATTTGTTTACTGAACCAA-TTCAAAT
* * * * * * *
4891 AGTTATGACTATTTGAATAATTATCTATCTAAAATTATTATGACTTTTTATTTTATCATAAAACA
1 AGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACA
* * * * * * * * * *
4956 ATTGTTTTAGATCATAAAAGCTT-TCCCAAATAAAATAATATTACTTTATTAATGTTTTAAAAAT
66 ATTATTTCAGTTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTCTAAAAAT
** * * * ** * *
5020 TGGTAAGTTAAAGATTTAAAACATAAATTAGTTTGTTGAATCAATTAAAAT
131 TAATAAG-TAAGGATTTAAAAAATAAATTTGTTTACTGAACCAATTCAAAT
* * * * *
5071 AATTATG-GTCATTTGAACATTTATCTATTTCAAATCATTATGAA-CTTTTGTTTTGACATAAAA
1 AGTTATGACT-ATTTGAATAATTATCTATTTCAAATCATTAT-AACCTTTTGTTTTGTCATAAAA
* * * ** *
5134 TAATTGTTTTTCA-TT-ATACTAGCTTATTCGTAATAAAATAAT-TTAATTTATTAATATT-TCA
64 CAA-T-TATTTCAGTTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTCT-A
* * *
5195 AAAATTAATAAGTAGGAGATTTGAAAAATAAATCTGTTTA-TCGAACCAATTCAAAT
126 AAAATTAATAAGTAAG-GATTTAAAAAATAAATTTGTTTACT-GAACCAATTCAAAT
* *
5251 AGTTATGACTATTTG--T-ATT-TC-AATT----TC-TTATAACCTTTTGTTTTTTCATAAAACA
1 AGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACA
* ** * * *
5306 ATTATTTCTA-TTCATACAAGTTTATTCGGAATAAAA-AATACTAATGTAATAATATTCTGAAAA
66 ATTATTTC-AGTTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTCTAAAAA
* * * *
5369 TTAATAACTAATAGATTTAAAAAATAAATTTGTTTACTAAACTAATTCAAAT
130 TTAATAAGTAA-GGATTTAAAAAATAAATTTGTTTACTGAACCAATTCAAAT
* * ** * * ** * *
5421 AGTTAAGGCTATAGGAACAATCTA--TATTTTAAATTGTTATGACATTTT-TTTAT-T-ATAAAA
1 AGTTATGACTATTTGAATAAT-TATCTATTTCAAATCATTATAACCTTTTGTTT-TGTCATAAAA
* * * * ** *
5481 TAATTTTTTCAGTTCTTACTAA-CTTATTCATAATAAAATAA-AAAAAATTATTAATATT-TCAA
64 CAATTATTTCAGTTCATAC-AAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTCT-AA
* * ** * * *
5543 AAATTAATCAA-TAAGAGATTTAATAAATAATTTTGTTTGTTGAACTAGTT-GAAT
127 AAATTAAT-AAGTAAG-GATTTAAAAAATAAATTTGTTTACTGAACCAATTCAAAT
* *
5597 AATTATGACTATTTGAACAATTA
1 AGTTATGACTATTTGAATAATTA
5620 AAATAAATTA
Statistics
Matches: 710, Mismatches: 157, Indels: 96
0.74 0.16 0.10
Matches are distributed among these distances:
168 5 0.01
169 9 0.01
170 113 0.16
171 4 0.01
173 2 0.00
174 4 0.01
175 5 0.01
176 23 0.03
177 87 0.12
178 13 0.02
179 50 0.07
180 222 0.31
181 23 0.03
182 11 0.02
183 41 0.06
184 98 0.14
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.41
Consensus pattern (180 bp):
AGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACA
ATTATTTCAGTTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTCTAAAAAT
TAATAAGTAAGGATTTAAAAAATAAATTTGTTTACTGAACCAATTCAAAT
Found at i:5394 original size:170 final size:170
Alignment explanation
Indices: 5115--5425 Score: 387
Period size: 170 Copynumber: 1.8 Consensus size: 170
5105 TCATTATGAA
* * * * * *
5115 CTTTTGTTTTGACATAAAATAATTGTTTTTCATTATACTAGCTTATTCGTAATAAAATAATTTAA
1 CTTTTGTTTTGACATAAAACAATTATTTCTCATTATACAAGCTTATTCGGAATAAAATAATCTAA
* * * * * *
5180 TTTATTAATATTTCAAAAATTAATAAGTAGGAGATTTGAAAAATAAATCTGTTTA-TCGAACCAA
66 TGTAATAATATTTCAAAAATTAATAACTAAGAGATTTAAAAAATAAATCTGTTTACT-AAACCAA
5244 TTCAAATAGTTATGACTATTTGTATTTCAATTTCTTATAAC
130 TTCAAATAGTTATGACTATTTGTATTTCAATTTCTTATAAC
** *
5285 CTTTTGTTTTTTCATAAAACAATTATTTCT-ATTCATACAAGTTTATTCGGAATAAAA-AATACT
1 CTTTTGTTTTGACATAAAACAATTATTTCTCATT-ATACAAGCTTATTCGGAATAAAATAAT-CT
* * * *
5348 AATGTAATAATA-TTCTGAAAATTAATAACTAATAGATTTAAAAAATAAATTTGTTTACTAAACT
64 AATGTAATAATATTTC-AAAAATTAATAACTAAGAGATTTAAAAAATAAATCTGTTTACTAAACC
5412 AATTCAAATAGTTA
128 AATTCAAATAGTTA
5426 AGGCTATAGG
Statistics
Matches: 118, Mismatches: 19, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
169 9 0.08
170 108 0.92
171 1 0.01
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.42
Consensus pattern (170 bp):
CTTTTGTTTTGACATAAAACAATTATTTCTCATTATACAAGCTTATTCGGAATAAAATAATCTAA
TGTAATAATATTTCAAAAATTAATAACTAAGAGATTTAAAAAATAAATCTGTTTACTAAACCAAT
TCAAATAGTTATGACTATTTGTATTTCAATTTCTTATAAC
Found at i:8954 original size:181 final size:180
Alignment explanation
Indices: 8756--9119 Score: 399
Period size: 181 Copynumber: 2.0 Consensus size: 180
8746 TTTCTTGGTT
* * *
8756 ATTAAGTTTCGAAATATTATTAAATTAATACTATTTTATTCTAAATAAA-ATAGCATGAACAAAA
1 ATTAAGTTTCGAAATATTAATAAACTAATACTATTTTATTCTAAACAAACATAGC-TGAACAAAA
* * * ** * *
8820 CCAATTGTTTAATGTCAAAATAAAAAGTTATAACAATTTGAAATAGATAATTATTCAAATAGTCA
65 ACAATTGTTTAATGACAAAACAAAAAGCAATAACAATTTGAAATAAATAATTATTCAAATAATCA
* * *
8885 AAACTATTTAAAATGGTTTGGTAAACAAATTTACTTT-TTAAATCTCTTACTA
130 AAACTATTTAAAATGGTTCGGTAAACAAAATTA-TTTGCTAAATCTCTTA-TA
* * * * * * * * *
8937 ATTAATTTTCTAAATATTAATAAACTAGTATTATTTTATTTTGAACAAACTTATCTTAACAAAAA
1 ATTAAGTTTCGAAATATTAATAAACTAATACTATTTTATTCTAAACAAACATAGCTGAACAAAAA
* ** * * *
9002 CAATTGTTTTATGACAAAACAAAAAGCAATAATGATTTGAAATAAATAATTGTTCAAATAATTAT
66 CAATTGTTTAATGACAAAACAAAAAGCAATAACAATTTGAAATAAATAATTATTCAAATAATCAA
* * * *
9067 AATTATTTGAACTGGTTCGGTAAATAAAATTATTTGCTAAATCTCTTATA
131 AACTATTTAAAATGGTTCGGTAAACAAAATTATTTGCTAAATCTCTTATA
9117 ATT
1 ATT
9120 TTTTGAAGTA
Statistics
Matches: 149, Mismatches: 32, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
180 8 0.05
181 138 0.93
182 3 0.02
ACGTcount: A:0.45, C:0.09, G:0.08, T:0.39
Consensus pattern (180 bp):
ATTAAGTTTCGAAATATTAATAAACTAATACTATTTTATTCTAAACAAACATAGCTGAACAAAAA
CAATTGTTTAATGACAAAACAAAAAGCAATAACAATTTGAAATAAATAATTATTCAAATAATCAA
AACTATTTAAAATGGTTCGGTAAACAAAATTATTTGCTAAATCTCTTATA
Found at i:9648 original size:14 final size:14
Alignment explanation
Indices: 9615--9652 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
9605 GTAATTCATA
*
9615 AAAT-ATTATATAT
1 AAATAATTATAAAT
9628 AATATAATTATAAAT
1 AA-ATAATTATAAAT
9643 AAATAATTAT
1 AAATAATTAT
9653 TATATTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 2 0.09
14 10 0.45
15 10 0.45
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
AAATAATTATAAAT
Found at i:9656 original size:17 final size:17
Alignment explanation
Indices: 9634--9681 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
9624 ATATAATATA
9634 ATTATAAATAAATAATT
1 ATTATAAATAAATAATT
** *
9651 ATTATATTTAAATTATT
1 ATTATAAATAAATAATT
*
9668 ATT-TAAATATATAA
1 ATTATAAATAAATAA
9682 ATATAAGTAT
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
16 7 0.29
17 17 0.71
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
ATTATAAATAAATAATT
Found at i:9933 original size:19 final size:18
Alignment explanation
Indices: 9909--9947 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 18
9899 AACATTAAAC
9909 ATTATTATTAAATAATAAT
1 ATTATTATT-AATAATAAT
9928 ATTATTATTAATAATAAT
1 ATTATTATTAATAATAAT
9946 AT
1 AT
9948 AACTATAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTATTATTAATAATAAT
Found at i:9960 original size:18 final size:18
Alignment explanation
Indices: 9914--9953 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
9904 TAAACATTAT
* *
9914 TATTAAATAATAATATTAT
1 TATT-AATAATAATATAAC
9933 TATTAATAATAATATAAC
1 TATTAATAATAATATAAC
9951 TAT
1 TAT
9954 AATTAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (18 bp):
TATTAATAATAATATAAC
Found at i:11036 original size:17 final size:17
Alignment explanation
Indices: 11014--11046 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
11004 TTATCAAATA
11014 ATTTATATAA-ATTATTT
1 ATTTAT-TAATATTATTT
11031 ATTTATTAATATTATT
1 ATTTATTAATATTATT
11047 AATTAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
ATTTATTAATATTATTT
Found at i:11837 original size:26 final size:24
Alignment explanation
Indices: 11807--11874 Score: 64
Period size: 26 Copynumber: 2.7 Consensus size: 24
11797 TAATTAAACT
11807 TTAATTAAATATAAATTAAATAATAG
1 TTAATTAAATATAAATTAAAT-A-AG
* * * *
11833 TTAATTAGATATTAGTTTAATAAG
1 TTAATTAAATATAAATTAAATAAG
*
11857 TTAATTAATTATATAATT
1 TTAATTAAATATA-AATT
11875 GTTTAATAAT
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
24 12 0.36
25 4 0.12
26 17 0.52
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.46
Consensus pattern (24 bp):
TTAATTAAATATAAATTAAATAAG
Found at i:12045 original size:23 final size:22
Alignment explanation
Indices: 12012--12128 Score: 52
Period size: 20 Copynumber: 5.3 Consensus size: 22
12002 TTAAGTAAAC
12012 ATTATT-A-TAATAAT-TATTT
1 ATTATTAATTAATAATATATTT
12031 ATTATTAGGATTAATATATAATATTT
1 ATTATTA--ATTAATA-AT-ATATTT
* * *
12057 AATATCTATAATTAATAATCTATAT
1 -AT-TAT-TAATTAATAATATATTT
*
12082 ATTA--AATTAATAATA-ATTA
1 ATTATTAATTAATAATATATTT
*
12101 ATTTATT-ATT-ATAATATAATT
1 A-TTATTAATTAATAATATATTT
*
12122 AATATTA
1 ATTATTA
12129 TTTTATTAGA
Statistics
Matches: 73, Mismatches: 10, Indels: 28
0.66 0.09 0.25
Matches are distributed among these distances:
19 9 0.12
20 23 0.32
21 6 0.08
22 1 0.01
23 6 0.08
24 4 0.05
25 4 0.05
26 7 0.10
27 9 0.12
28 2 0.03
29 2 0.03
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (22 bp):
ATTATTAATTAATAATATATTT
Found at i:12114 original size:20 final size:22
Alignment explanation
Indices: 12089--12134 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 22
12079 TATATTAAAT
12089 TAATAATAATTAAT-TTATTATTA
1 TAAT-ATAATTAATATTATT-TTA
12112 TAATATAATTAATATTATTTTA
1 TAATATAATTAATATTATTTTA
12134 T
1 T
12135 TAGATTAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 13 0.59
23 9 0.41
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (22 bp):
TAATATAATTAATATTATTTTA
Found at i:12133 original size:28 final size:26
Alignment explanation
Indices: 12064--12136 Score: 69
Period size: 27 Copynumber: 2.7 Consensus size: 26
12054 TTTAATATCT
*
12064 ATAATTAA-TAATCTATATATTAAATTA
1 ATAA-TAATTAATTTAT-TATTAAATTA
12091 ATAATAATTAATTTATTATTATAATATA
1 ATAATAATTAATTTATTATTA-AAT-TA
*
12119 ATTAAT-ATTATTTTATTA
1 A-TAATAATTAATTTATTA
12137 GATTAATTGT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
26 8 0.20
27 14 0.35
28 14 0.35
29 4 0.10
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (26 bp):
ATAATAATTAATTTATTATTAAATTA
Found at i:12275 original size:19 final size:20
Alignment explanation
Indices: 12253--12301 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
12243 AATAATATTT
12253 TTAATTATTAATAT-AATTA
1 TTAATTATTAATATAAATTA
*
12272 TTAATTA-TATTATAAATTA
1 TTAATTATTAATATAAATTA
12291 TATAATATATT
1 T-TAAT-TATT
12302 TTAACCAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 5 0.20
19 13 0.52
20 4 0.16
21 2 0.08
22 1 0.04
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TTAATTATTAATATAAATTA
Found at i:12651 original size:14 final size:14
Alignment explanation
Indices: 12632--12661 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
12622 CTTAATTTAA
12632 ATTATAATAAATTT
1 ATTATAATAAATTT
*
12646 ATTATACTAAATTT
1 ATTATAATAAATTT
12660 AT
1 AT
12662 AATATCTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (14 bp):
ATTATAATAAATTT
Found at i:13302 original size:13 final size:13
Alignment explanation
Indices: 13284--13308 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13274 TATATTAGTT
13284 TTAATATTTAAAA
1 TTAATATTTAAAA
13297 TTAATATTTAAA
1 TTAATATTTAAA
13309 TTTTAAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TTAATATTTAAAA
Found at i:13303 original size:27 final size:28
Alignment explanation
Indices: 13255--13321 Score: 66
Period size: 28 Copynumber: 2.4 Consensus size: 28
13245 TTTAATAAAA
*
13255 TTAATATATTAAAACAATATATATT-AGTT
1 TTAATAT-TTAAAACAATATAT-TTAAATT
**
13284 TTAATATTTAAAATTA-ATATTTAAATT
1 TTAATATTTAAAACAATATATTTAAATT
13311 TTAAATATTTA
1 TT-AATATTTA
13322 TATTATATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
26 2 0.06
27 9 0.27
28 15 0.45
29 7 0.21
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (28 bp):
TTAATATTTAAAACAATATATTTAAATT
Found at i:13313 original size:20 final size:20
Alignment explanation
Indices: 13290--13353 Score: 58
Period size: 20 Copynumber: 3.0 Consensus size: 20
13280 AGTTTTAATA
13290 TTTAAA-ATTAATATTTAAAT
1 TTTAAATATTAATA-TTAAAT
* *
13310 TTTAAATATTTATATTATAT
1 TTTAAATATTAATATTAAAT
*
13330 TTTAATTAATTATATATTATAAT
1 TTTAAAT-ATTA-ATATTA-AAT
13353 T
1 T
13354 AAATTAGATT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
20 17 0.49
21 9 0.26
22 6 0.17
23 3 0.09
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TTTAAATATTAATATTAAAT
Found at i:13347 original size:17 final size:17
Alignment explanation
Indices: 13325--13377 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
13315 ATATTTATAT
13325 TATATTTTAATTAATTA
1 TATATTTTAATTAATTA
*
13342 TATATTATAATTAAATTA
1 TATATTTTAATT-AATTA
* * *
13360 GAT-TATTATTTAATTA
1 TATATTTTAATTAATTA
13376 TA
1 TA
13378 ACAATTATTT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
16 6 0.21
17 16 0.55
18 7 0.24
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (17 bp):
TATATTTTAATTAATTA
Found at i:13348 original size:22 final size:22
Alignment explanation
Indices: 13295--13369 Score: 68
Period size: 22 Copynumber: 3.5 Consensus size: 22
13285 TAATATTTAA
* *
13295 AATTA-ATATTTAAATTTTAAAT
1 AATTATATA-TTATATTTTAATT
13317 -ATT-TATATTATATTTTAATT
1 AATTATATATTATATTTTAATT
* *
13337 AATTATATATTATAATTAAATT
1 AATTATATATTATATTTTAATT
13359 AGATTAT-TATT
1 A-ATTATATATT
13370 TAATTATAAC
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
20 11 0.24
21 9 0.20
22 20 0.44
23 5 0.11
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (22 bp):
AATTATATATTATATTTTAATT
Found at i:13465 original size:24 final size:25
Alignment explanation
Indices: 13438--13489 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 25
13428 TTATTTAAAT
13438 AAATTAGATTTAAT-ATAAGTAGTA
1 AAATTAGATTTAATAATAAGTAGTA
* * *
13462 AAA-TATATTTAATAATAATTATTA
1 AAATTAGATTTAATAATAAGTAGTA
13486 AAAT
1 AAAT
13490 ATTTGTTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
23 9 0.39
24 14 0.61
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (25 bp):
AAATTAGATTTAATAATAAGTAGTA
Found at i:13490 original size:24 final size:23
Alignment explanation
Indices: 13445--13491 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
13435 AATAAATTAG
13445 ATTTAATATAAGTAGTAAAATAT
1 ATTTAATATAAGTAGTAAAATAT
* *
13468 ATTTAATAATAATTATTAAAATAT
1 ATTTAAT-ATAAGTAGTAAAATAT
13492 TTGTTAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (23 bp):
ATTTAATATAAGTAGTAAAATAT
Found at i:13511 original size:11 final size:11
Alignment explanation
Indices: 13460--13511 Score: 52
Period size: 11 Copynumber: 4.5 Consensus size: 11
13450 ATATAAGTAG
*
13460 TAAAATATATT
1 TAAAATATTTT
*
13471 TAATAATAATTAT
1 TAA-AAT-ATTTT
13484 TAAAATATTTGT
1 TAAAATATTT-T
13496 T-AAATATTTT
1 TAAAATATTTT
13506 TAAAAT
1 TAAAAT
13512 TAATAAATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
10 2 0.06
11 18 0.53
12 8 0.24
13 6 0.18
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (11 bp):
TAAAATATTTT
Found at i:14166 original size:92 final size:92
Alignment explanation
Indices: 13999--14173 Score: 199
Period size: 92 Copynumber: 1.9 Consensus size: 92
13989 ATGCATGAAC
* ** ** * * * *
13999 AGAACCAATTATTTTATGACAAAACAAAATGTCATAATGTTTTAAAATAGATAATTGTTTAGATA
1 AGAAACAATTATTTTACAACAAAACAAAATGTCATAAAATTTGAAAATAGATAATAGTTCAAATA
*
14064 GTTATAACTATTTCAACTTGATCAATA
66 GATATAACTATTTCAACTTGATCAATA
* *
14091 AGAAACAATTGTTTTACAACAAAATAAAATGTCATAACAATTTGAAAA-AGATAATAGTTCAAAT
1 AGAAACAATTATTTTACAACAAAACAAAATGTCATAA-AATTTGAAAATAGATAATAGTTCAAAT
* * *
14155 GGATATGACTATTTGAACT
65 AGATATAACTATTTCAACT
14174 AGTTCGGTAA
Statistics
Matches: 67, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
92 60 0.90
93 7 0.10
ACGTcount: A:0.46, C:0.10, G:0.11, T:0.34
Consensus pattern (92 bp):
AGAAACAATTATTTTACAACAAAACAAAATGTCATAAAATTTGAAAATAGATAATAGTTCAAATA
GATATAACTATTTCAACTTGATCAATA
Found at i:14395 original size:181 final size:180
Alignment explanation
Indices: 14078--14426 Score: 429
Period size: 181 Copynumber: 1.9 Consensus size: 180
14068 TAACTATTTC
*
14078 AACTTGATCAATAAGAAACAATTGTTTTACAACAAAATAAAATGTCATAACAATTTGAAAAAGAT
1 AACTTGATCAATAAGAAACAATTGTTTTACAACAAAACAAAATGTCATAACAATTTGAAAAAGAT
** * * * *
14143 AATAGTTCAAATGGATATGACTATTTGAACTAGTTCGGTAATCTAATTAATTTTTTAAATCTTCA
66 AATAGTTCAAATCAATATAACTATTTGAACTAGCTCGGTAAACAAATTAATTTTTTAAATCTTCA
* *
14208 ACTTATTAATTTTTAGAATGTTAA-TATATTAGTATTATTTTATTCCAAATA
131 ACTTATTAA-TTTTAGAATATTAATTA-ATTAGAATTATTTTATTCCAAATA
* * ** * *
14259 AACTTGTATGAAT-AGAAACAATTGTTTTATAACAAAACAAAA-GATCATAATGATTTGAAATAT
1 AACTTG-ATCAATAAGAAACAATTGTTTTACAACAAAACAAAATG-TCATAACAATTTGAAAAAG
* *
14322 ATAATTGTTCAAA-CAATCATAACTATTTGAACTCA-CTCGGTAAACAAATTTATTTTTTAAATC
64 ATAATAGTTCAAATCAAT-ATAACTATTTGAACT-AGCTCGGTAAACAAATTAATTTTTTAAATC
** *
14385 TTTTACTTATTAATTTTGGAATATTAATTAATTAGAATTATT
127 TTCAACTTATTAATTTTAGAATATTAATTAATTAGAATTATT
14427 AATTATTATA
Statistics
Matches: 143, Mismatches: 20, Indels: 11
0.82 0.11 0.06
Matches are distributed among these distances:
180 26 0.18
181 111 0.78
182 6 0.04
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (180 bp):
AACTTGATCAATAAGAAACAATTGTTTTACAACAAAACAAAATGTCATAACAATTTGAAAAAGAT
AATAGTTCAAATCAATATAACTATTTGAACTAGCTCGGTAAACAAATTAATTTTTTAAATCTTCA
ACTTATTAATTTTAGAATATTAATTAATTAGAATTATTTTATTCCAAATA
Found at i:14428 original size:31 final size:31
Alignment explanation
Indices: 14391--14455 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
14381 AATCTTTTAC
*
14391 TTATTAATT-TTGGAATATTAATTAATTAGAA
1 TTATTAATTATTAGAAT-TTAATTAATTAGAA
* *
14422 TTATTAATTATTATAATTTAATTAATTATAA
1 TTATTAATTATTAGAATTTAATTAATTAGAA
14453 TTA
1 TTA
14456 AATATGAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
31 25 0.83
32 5 0.17
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (31 bp):
TTATTAATTATTAGAATTTAATTAATTAGAA
Found at i:14456 original size:14 final size:13
Alignment explanation
Indices: 14409--14456 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
14399 TTTGGAATAT
**
14409 TAATTAATTAGAA
1 TAATTAATTATTA
*
14422 TTATTAATTATTA
1 TAATTAATTATTA
14435 TAATTTAATTAATTA
1 TAA-TTAATT-ATTA
14450 TAATTAA
1 TAATTAA
14457 ATATGAATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
13 12 0.41
14 10 0.34
15 7 0.24
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (13 bp):
TAATTAATTATTA
Found at i:15165 original size:25 final size:25
Alignment explanation
Indices: 15127--15175 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
15117 TTTCATACCA
15127 TATGAAAAAACTAAGAAATAAAACTG
1 TATGAAAAAACTAAG-AATAAAACTG
*
15153 TATG-AAAAACTAAGAGTAAAACT
1 TATGAAAAAACTAAGAATAAAACT
15176 AAATGTATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.36
25 10 0.45
26 4 0.18
ACGTcount: A:0.59, C:0.08, G:0.12, T:0.20
Consensus pattern (25 bp):
TATGAAAAAACTAAGAATAAAACTG
Found at i:16703 original size:22 final size:22
Alignment explanation
Indices: 16677--16730 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
16667 TTAATGAAAT
*
16677 ATTATTATATATAATTC-TATTA
1 ATTA-TATATATAATTCTTATCA
*
16699 ATTATATATATTATTCTTATCA
1 ATTATATATATAATTCTTATCA
16721 ATTATATATA
1 ATTATATATA
16731 AAAATTATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 11 0.38
22 18 0.62
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.54
Consensus pattern (22 bp):
ATTATATATATAATTCTTATCA
Found at i:17153 original size:11 final size:10
Alignment explanation
Indices: 17137--17186 Score: 57
Period size: 10 Copynumber: 4.9 Consensus size: 10
17127 ACTATTAGTT
17137 TATTTAATTAA
1 TATTTAATT-A
17148 TATTTAATTA
1 TATTTAATTA
* *
17158 TAATTAAGTA
1 TATTTAATTA
17168 TATTCTAATT-
1 TATT-TAATTA
17178 TATTTAATT
1 TATTTAATT
17187 TTTTAAATCT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
9 5 0.15
10 16 0.47
11 13 0.38
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (10 bp):
TATTTAATTA
Found at i:17489 original size:180 final size:181
Alignment explanation
Indices: 17179--17601 Score: 430
Period size: 180 Copynumber: 2.3 Consensus size: 181
17169 ATTCTAATTT
* * * *
17179 ATTTAATTTTTTAAATCTCTTAGTTATTAATTTTT-AGAATATTATTACAATAGTATTATTTTAT
1 ATTT-ATTTTTTAAATCTCCTACTTATTAATTTTTGA-AATATTAGTACAATAGTATTATTTTAA
*** * * * * * *
17243 TTTTAATAAACTTGTATGAATAGAAATAATTGTTTTATGACATAATAAAAGGTTATAATAATTTG
64 TCCGAATAAACTTGTATGAATAAAAAAAATTGGTTTATAACAAAACAAAAGGTTATAATAATTTG
* * * *
17308 AAATATATAATTGTTCAAATAG-TCATAACTATTTGAACTGGTTCAATAAACAA
129 AAATAGATAATTATTCAAATGGCT-ATAACTATTTGAACTGATTCAATAAACAA
*
17361 ATTTA-TTTTTAAATCTCCTACTTATTAATTTTTGAAATATTAGTA-AATTAGTTTTATTTTAAT
1 ATTTATTTTTTAAATCTCCTACTTATTAATTTTTGAAATATTAGTACAA-TAGTATTATTTTAAT
** *
17424 CCGAATAGGCTTGTATG-ATAAAAAAAAATTGGTTTATAACAAAACAAAA-GTTCATAATGATTT
65 CCGAATAAACTTGTATGAAT-AAAAAAAATTGGTTTATAACAAAACAAAAGGTT-ATAATAATTT
* * * ** **
17487 GAAATAGATAATTATTTAAATGGCTGTAATTATTTGAACTGATTTGATAAACTT
128 GAAATAGATAATTATTCAAATGGCTATAACTATTTGAACTGATTCAATAAACAA
* * * * *
17541 ATTTATTTTTTAAATCT-CTAACTTATCAAATTTTGAAATATTAATA-AGTAATATTATTTTA
1 ATTTATTTTTTAAATCTCCT-ACTTATTAATTTTTGAAATATTAGTACAATAGTATTATTTTA
17602 TGCACTGAAA
Statistics
Matches: 200, Mismatches: 34, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
179 7 0.04
180 151 0.75
181 38 0.19
182 4 0.02
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.44
Consensus pattern (181 bp):
ATTTATTTTTTAAATCTCCTACTTATTAATTTTTGAAATATTAGTACAATAGTATTATTTTAATC
CGAATAAACTTGTATGAATAAAAAAAATTGGTTTATAACAAAACAAAAGGTTATAATAATTTGAA
ATAGATAATTATTCAAATGGCTATAACTATTTGAACTGATTCAATAAACAA
Found at i:17894 original size:345 final size:342
Alignment explanation
Indices: 17265--17900 Score: 771
Period size: 345 Copynumber: 1.9 Consensus size: 342
17255 TGTATGAATA
* *
17265 GAAATAATTGTTTTATGACATAATAAAAGGTTATAATAATTTGAAATATATAATTGTTCAAATAG
1 GAAATAATTGTTTTATGACAAAATAAAAGGTCATAATAATTTGAAATATATAATTGTTCAAATAG
* *
17330 TCATAACTATTTGAACTGGTTCAATAAACAAATTTATTTTTAAATCTCCTACTTATTAATTTTTG
66 TCATAACAATTTAAACTGGTTCAATAAACAAATTTATTTTTAAATCTCCTACTTATTAATTTTTG
* * * * * * * *
17395 AAATATTAGTAAATTAGTTTTATTTTAATCCGAATAGGCTTGTATGATAAAAAAAAATTGGTTTA
131 AAATATTAATAAATTAGTATTATTATAATCCAAATAGGCATGTATAAGAAAAAAAAATTAGTTTA
* * * *
17460 TAACAAAACAAAAGTTCATAATGATTTGAAATAGATAATTATTTAAATGGCTGTAATTATTTGAA
196 TAACAAAACAAAAGTTCAAAATGAGTTGAAACAGATAATTATTTAAATGGCTGTAATTATTTAAA
* * *
17525 CTGATTTGATAAACTTATTTATTTTTTAAATCTCTAACTTATCAAATTTTGAAATATTAATAAGT
261 CTGATTCGACAAACTCATTTA-TTTTTAAATCTCTAACTTATCAAATTTTGAAATATTAATAAGT
17590 AATATTATTTTATGCACT
325 AATATTATTTTATGCACT
* * * *
17608 GAAATAATTGTTTTATGATAAAATAAAATGTCATAATGATTTTAAATATATAATTGTTCAAATAG
1 GAAATAATTGTTTTATGACAAAATAAAAGGTCATAATAATTTGAAATATATAATTGTTCAAATAG
* * * * * *
17673 TCATAACAATTTAAACAT-GTTCAGTAAACTAATTTATGTTTTTTAATTTCTTGCTTATTAATTT
66 TCATAACAATTTAAAC-TGGTTCAATAAACAAATTTA--TTTTTAAATCTCCTACTTATTAATTT
* * * * * *** * *
17737 TTTAAATGTTAATAAATTAGTATTATTATATTTCAAATTGGCATGTATAAGCTGAAACAATTATT
128 TTGAAATATTAATAAATTAGTATTATTATAATCCAAATAGGCATGTATAAGAAAAAAAAATTAGT
* * *
17802 TTATAACTAAACAAAAAG-TCAAAACT-AGTTGAAACAGATAATTGTTCT-AATAGTCT-TAATT
193 TTATAACAAAAC-AAAAGTTCAAAA-TGAGTTGAAACAGATAATTATT-TAAAT-GGCTGTAATT
17863 ATTTAAACTGATTCGACAAA-TACATTTATTTTTAAATC
254 ATTTAAACTGATTCGACAAACT-CATTTATTTTTAAATC
17901 CTTATTAATT
Statistics
Matches: 243, Mismatches: 42, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
343 89 0.37
344 12 0.05
345 132 0.54
346 10 0.04
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (342 bp):
GAAATAATTGTTTTATGACAAAATAAAAGGTCATAATAATTTGAAATATATAATTGTTCAAATAG
TCATAACAATTTAAACTGGTTCAATAAACAAATTTATTTTTAAATCTCCTACTTATTAATTTTTG
AAATATTAATAAATTAGTATTATTATAATCCAAATAGGCATGTATAAGAAAAAAAAATTAGTTTA
TAACAAAACAAAAGTTCAAAATGAGTTGAAACAGATAATTATTTAAATGGCTGTAATTATTTAAA
CTGATTCGACAAACTCATTTATTTTTAAATCTCTAACTTATCAAATTTTGAAATATTAATAAGTA
ATATTATTTTATGCACT
Found at i:18319 original size:178 final size:180
Alignment explanation
Indices: 17998--18375 Score: 476
Period size: 178 Copynumber: 2.1 Consensus size: 180
17988 TTATTTTACA
* * *
17998 ACAAAACAAAATGTCATAATGATTTGAAATAGATAATAGTTCAAATGGACATGACTATTTGAACT
1 ACAAAACAAAA-GTCATAATGATTTGAAATAAATAATAGTTCAAATAGACATAACTATTTGAACT
*** *
18063 TGTTTGCTAAATAGATTTATTTTTTAAATCTCCAACTTATTAATTTTTAGAATATTAATAAATTA
65 CACTTGCTAAATAGATGTATTTTTTAAATCTCCAACTTATTAATTTTTAGAATATTAATAAATTA
* * * * *
18128 ATATTATTTTATTTCGAATAAACTTTTATGAATAGAAACAATTGTTTTATG
130 ATATAATTTTATTTCGAATAAACTTGTATGAACAGAAACAATTGATTTATC
* * * * *
18179 ACAAAAGAAAAGATCATAATGATTTGAAATAAATATTTGTTTAAATAGTCATAACTATTTGAACT
1 ACAAAACAAAAG-TCATAATGATTTGAAATAAATAATAGTTCAAATAGACATAACTATTTGAACT
* *** *
18244 CACTTGGTAAATAGA-GT-TTTTTT-AATCTTTTACTTATTAATTTTT-GAAATTTTAATAAATT
65 CACTTGCTAAATAGATGTATTTTTTAAATCTCCAACTTATTAATTTTTAG-AATATTAATAAATT
* *
18305 AATATAATTTTATTTTGAATAAGCTTGTATGAACAGAAACAATTGATTTATC
129 AATATAATTTTATTTCGAATAAACTTGTATGAACAGAAACAATTGATTTATC
18357 ACAAAACAAATAGTCATAA
1 ACAAAACAAA-AGTCATAA
18376 CTATTTAAAC
Statistics
Matches: 169, Mismatches: 25, Indels: 9
0.83 0.12 0.04
Matches are distributed among these distances:
177 1 0.01
178 92 0.54
179 8 0.05
180 2 0.01
181 66 0.39
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.40
Consensus pattern (180 bp):
ACAAAACAAAAGTCATAATGATTTGAAATAAATAATAGTTCAAATAGACATAACTATTTGAACTC
ACTTGCTAAATAGATGTATTTTTTAAATCTCCAACTTATTAATTTTTAGAATATTAATAAATTAA
TATAATTTTATTTCGAATAAACTTGTATGAACAGAAACAATTGATTTATC
Found at i:20500 original size:61 final size:64
Alignment explanation
Indices: 20382--20507 Score: 163
Period size: 61 Copynumber: 2.0 Consensus size: 64
20372 AATTAGTACT
*
20382 ATTTTATTTCAAATAAGCTTGTATGTTGAAAAGCAATTGTTTTATGACAGAAAGAAAGGTAATAA
1 ATTTTATTT-AAATAAGCTTGTATGTTGAAAAGC-A-TGGTTTATGACAGAAAGAAAGGTAATAA
20447 CA
63 CA
20449 ATTTTATTT-AAT-AGCTTGTATGTTGGAAAA-C-TGGTTTATGACA-AAACGAAAGGTAATAA
1 ATTTTATTTAAATAAGCTTGTATGTT-GAAAAGCATGGTTTATGACAGAAA-GAAAGGTAATAA
20508 TGGATTTGAA
Statistics
Matches: 56, Mismatches: 1, Indels: 10
0.84 0.01 0.15
Matches are distributed among these distances:
60 3 0.05
61 23 0.41
64 13 0.23
65 8 0.14
67 9 0.16
ACGTcount: A:0.40, C:0.07, G:0.17, T:0.35
Consensus pattern (64 bp):
ATTTTATTTAAATAAGCTTGTATGTTGAAAAGCATGGTTTATGACAGAAAGAAAGGTAATAACA
Found at i:21595 original size:182 final size:180
Alignment explanation
Indices: 21332--22446 Score: 892
Period size: 181 Copynumber: 6.1 Consensus size: 180
21322 AAATCTTTAA
* * * * * * * *
21332 TTATTAACA-TTCAAAAAATTAATAAGCAAAAGATATGAAAAAATCAATCTATTTACCG-ATCAA
1 TTATTAATATTTC-AAAAATTAATAAGCAAGAG-T-TTAAAAAATAAATTTGTTTACTGAACCAA
* * *
21395 GTTCAAATAGTTATGACTATTTGAACAATTATTTATTTAAAATCATTATAACCTTTTTGTTTTGA
63 -TTCAAATAATTATGACTATTTGAACAATTATCTATTTAAAATCATTATAACC-TTTTGTTTTGT
* * * *
21460 CAAAAAATAATTGTTTCAGTTCATAAAAGCTTATCCAAAATAAAATAATACTAAT
126 CATAAAACAATTGTTTCAGTTCATACAAGCTTATTCAAAATAAAATAATACTAAT
* * * *
21515 TTCTTAATATTTCAAAAATTAATAAGCAAGAGTTTAAAAATATTAATTTGTTTACTAAACAAATT
1 TTATTAATATTTCAAAAATTAATAAGCAAGAGTTTAAAAA-ATAAATTTGTTTACTGAACCAATT
* * * *
21580 CAAATAATTATGACTATTTGAATAATTATCTATTTAAAATCATTTTGACCTTTAGTTTTGTCATA
65 CAAATAATTATGACTATTTGAACAATTATCTATTTAAAATCATTATAACCTTTTGTTTTGTCATA
** *
21645 AAACAATTGTTTCAGTTCATACAAGCTTATTTGAAATAAAATAATAGTAAT
130 AAACAATTGTTTCAGTTCATACAAGCTTATTCAAAATAAAATAATACTAAT
* * * ** *
21696 TTATTAATATTTCAAAAATTAATAAGTAAGTGATTTAAAAAA-AGATTATGTTTA-TCGAATTAG
1 TTATTAATATTTCAAAAATTAATAAGCAAGAG-TTTAAAAAATAAATT-TGTTTACT-GAACCAA
* * * * * * *
21759 TTCAAATAATTATGGCCTATTTCAACAATTATCTATTTGAAATCAATATTATCTTTTGTTTGGTC
63 TTCAAATAATTAT-GACTATTTGAACAATTATCTATTTAAAATCATTATAACCTTTTGTTTTGTC
* ** *
21824 ATATAACAATTGTTT-TTTATCATACAAGC---TTCAGAATAAAATAATACTAAT
127 ATAAAACAATTGTTTCAGT-TCATACAAGCTTATTCAAAATAAAATAATACTAAT
* * * * * **
21875 TTATTAATCTTTCAAAAGTTAATAAGTAAGAAATTTAAAAAATAAATTTATTTA-TCGAACCCGT
1 TTATTAATATTTCAAAAATTAATAAGCAAG-AGTTTAAAAAATAAATTTGTTTACT-GAACCAAT
* * * * * *
21939 TTAAATAGTTATGACTATTTGAACAAATGTATAGTTTAAATCAATTATTTAAAAAATAAACCTTT
64 TCAAATAATTATGACTATTTGAACAATTATCTA-TTT-AA--AATCA-TT-----AT-AACC-TT
* * * *
22004 TTGTTCTATCATAAAACAATT-ATTCATGTTCATACAAGCTTATTCAAAATAAAATAATACTAGT
117 TTGTTTTGTCATAAAACAATTGTTTCA-GTTCATACAAGCTTATTCAAAATAAAATAATACTAAT
* * * * *
22068 CTAATAATA-CTCTGAAAATTAATAA-CTAAGAGATTTAAAAAATAAATTTGTTTGCTGAACCAA
1 TTATTAATATTTC-AAAAATTAATAAGC-AAGAG-TTTAAAAAATAAATTTGTTTACTGAACCAA
* * * * * * *
22131 TTTAAATAGTTAAGACTATATGAACAATTATCTATTTTAAATCGTTATGACCTTTTGTTTTGTCA
63 TTCAAATAATTATGACTATTTGAACAATTATCTATTTAAAATCATTATAACCTTTTGTTTTGTCA
* * * * * *
22196 TAAAACAATTTTTTCAATTTATACTAGCTTATTCAGAATAAAATAA-AATGAAT
128 TAAAACAATTGTTTCAGTTCATACAAGCTTATTCAAAATAAAATAATACT-AAT
* * * *
22249 TTATTAATATTTCAAAAATTAATAAG--ATA-TTTAATAAAT-AATTCTGGTTACCT-AACCGAT
1 TTATTAATATTTCAAAAATTAATAAGCAAGAGTTTAAAAAATAAATT-TGTTTA-CTGAACCAAT
* * * * * *
22309 TAAAATAATTATGATTATTTGAACAATTATTTATTTCAAATAATTA-AGATCTTTTGTTTTGTCA
64 TCAAATAATTATGACTATTTGAACAATTATCTATTTAAAATCATTATA-ACCTTTTGTTTTGTCA
* * * * * * *
22373 TAAAACAAATGTTT---TTCCATATAAGTTTGTTCGAAATAAATTAATACTACT
128 TAAAACAATTGTTTCAGTT-CATACAAGCTTATTCAAAATAAAATAATACTAAT
*
22424 CTATTAATATTT--AAAATTAATAA
1 TTATTAATATTTCAAAAATTAATAA
22447 TAGATCTAAA
Statistics
Matches: 748, Mismatches: 144, Indels: 90
0.76 0.15 0.09
Matches are distributed among these distances:
173 11 0.01
174 2 0.00
175 32 0.04
176 6 0.01
177 83 0.11
178 18 0.02
179 82 0.11
180 11 0.01
181 183 0.24
182 145 0.19
183 31 0.04
184 3 0.00
188 4 0.01
189 7 0.01
190 29 0.04
191 2 0.00
192 6 0.01
193 92 0.12
194 1 0.00
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.40
Consensus pattern (180 bp):
TTATTAATATTTCAAAAATTAATAAGCAAGAGTTTAAAAAATAAATTTGTTTACTGAACCAATTC
AAATAATTATGACTATTTGAACAATTATCTATTTAAAATCATTATAACCTTTTGTTTTGTCATAA
AACAATTGTTTCAGTTCATACAAGCTTATTCAAAATAAAATAATACTAAT
Found at i:21614 original size:16 final size:17
Alignment explanation
Indices: 21582--21614 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
21572 AACAAATTCA
21582 AATAATTATGACTATTTG
1 AATAATTAT-ACTATTTG
21600 AATAATTAT-CTATTT
1 AATAATTATACTATTT
21615 AAAATCATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (17 bp):
AATAATTATACTATTTG
Found at i:22694 original size:17 final size:16
Alignment explanation
Indices: 22665--22716 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 16
22655 TAGTTTTTAT
22665 TAATTATAAATTAATTGA
1 TAATTA-AAATTAATT-A
22683 TAATTAAAATT-ATT-
1 TAATTAAAATTAATTA
22697 TAATT-AAATTAATTA
1 TAATTAAAATTAATTA
22712 TAATT
1 TAATT
22717 GTATAGATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
13 5 0.16
14 8 0.25
15 5 0.16
16 3 0.09
17 5 0.16
18 6 0.19
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTAAAATTAATTA
Found at i:22710 original size:9 final size:10
Alignment explanation
Indices: 22663--22716 Score: 51
Period size: 11 Copynumber: 5.3 Consensus size: 10
22653 TATAGTTTTT
22663 ATTAATTATAA
1 ATTAATTAT-A
22674 ATTAATTGATA
1 ATTAATT-ATA
22685 ATTAAAATTAT-
1 ATT--AATTATA
22696 -TTAATTA-A
1 ATTAATTATA
22704 ATTAATTATA
1 ATTAATTATA
22714 ATT
1 ATT
22717 GTATAGATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 13
0.74 0.00 0.26
Matches are distributed among these distances:
8 5 0.14
9 7 0.19
10 6 0.16
11 11 0.30
12 4 0.11
13 4 0.11
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (10 bp):
ATTAATTATA
Found at i:23668 original size:16 final size:17
Alignment explanation
Indices: 23647--23679 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
23637 TAGCAATTAG
23647 AAATAG-ATAATTATTC
1 AAATAGCATAATTATTC
23663 AAATAGTCATAATTATT
1 AAATAG-CATAATTATT
23680 TGTACTTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATAGCATAATTATTC
Found at i:23716 original size:181 final size:179
Alignment explanation
Indices: 23442--24699 Score: 912
Period size: 181 Copynumber: 7.0 Consensus size: 179
23432 GTGACATGAG
* * * * * * * * **
23442 AAACAAAAAGTCATAACAATTCGAAATAAAATAACTATTCAAATAGTTATAATTATTTAAATTTA
1 AAACAAAAGGTCATAACGATTTGAAAT-AAATAATTATTCAAATAGTCATAACTATTTGAACTGG
* * *
23507 TTCGATAAATAGATTTATTTTTTAAATCTTTTACTTATTAGTTGTTTGAATATTAATAAATTTA-
65 TTTGATAAACAGATTTATTTTTTAAATCTTTTACTTATTAATT-TTTGAATATTAATAAA-TTAG
* * * *
23571 TATAATTTTATTTGAAATAAGCTTGTATGAATAGAAAATTTTGTTTTAGGACA
128 TATTATTTTATTTCAAATAAGCTTGTATGAA-AGAAAATATTGTTTTATGACA
** * * * * * * *
23624 AAACAAAAGGTTTTAGCAATTAGAAATAGATAATTATTCAAATAGTCATAATTATTTGTACTTGT
1 AAACAAAAGGTCATAACGATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTGGT
* * * *
23689 TTGATAAACAGATTCATTTTTTAAATC---T-CTTATTAATTTTTATAATATTAATAAAATAGAA
66 TTGATAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTT-GAATATTAATAAATTAGTA
* * * *
23750 TTATATTATTTCAAATAAGCTAGTATAGACAA-AAACA-ATTGTTTTGTGATA
130 TTATTTTATTTCAAATAAGCTTGTAT-GA-AAGAAA-ATATTGTTTTATGACA
* * * * * * *
23801 AAACAAAAGGTTATAATGATATGAAATAGATAATTATTCAAACAATCATAACTATTTGCACTGGT
1 AAACAAAAGGTCATAACGATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTGGT
** *** ** * * *** *
23866 CAGGCCAATTGATTCA-TTTTTAAATCTATTACTTATTAATTTCAAAATATTGATAAATTAGTAT
66 TTGATAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAATATTAATAAATTAGTAT
* *
23930 TACTTTATTTCAAATAAGAC-TGTATGAATAG-AAATAATTATTTTATGACA
131 TATTTTATTTCAAATAAG-CTTGTATGAA-AGAAAAT-ATTGTTTTATGACA
* * * * * *
23980 ATACAAATGGTCATAATGATTTGAAATAAATAATTATTTAAATAGTTATAACTAATTGAACTGGT
1 AAACAAAAGGTCATAACGATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTGGT
* * * * ** *
24045 TT-AGTAAATAGTTTTACTTTTTAAAT-TTCTTACTTCTTAATTTTCAAAATATTAATAAATTAA
66 TTGA-TAAACAGATTTATTTTTTAAATCTT-TTACTTATTAATTTT-TGAATATTAATAAATTAG
* * * * *
24108 TATTGTTTTATTCTGAACA-AA-CTTATATGTAAAAAAAACATT-TGTTTATGACA
128 TATTATTTTATT-TCAA-ATAAGCTTGTATG-AAAGAAAATATTGT-TTTATGACA
* ** * * * *
24161 AAATAAAAGAACATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAATTATTTGAACTGGT
1 AAACAAAAGGTCATAACGATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTGGT
* * * * * * * * * *
24226 TAGGTAAACTGAATTGTTTTTTAAATCTCTTGCTTATTAAGTTTTGAAATATTAATAAATTTGTT
66 TTGATAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTG-AATATTAATAAATTAGTA
* * * * * *
24291 TTACTTTATTCCGAATAAG-TTACTAAGAAATGAAAATTTTGTTTTATGACA
130 TTATTTTATTTCAAATAAGCTT-GTATGAAA-GAAAATATTGTTTTATGACA
* * * * * * * *
24342 AAACAAAAGGTCATAACGATTTGAAATAAAGAATTGTTCATATAGCCTTAAATATTTAAACTAGT
1 AAACAAAAGGTCATAACGATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTGGT
** * * * * *
24407 TCAATAAACAAATTTATTTTTTAAATCTCTTAGTTATTAATTTTTAGAATATTATTATATTAGTA
66 TTGATAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTT-GAATATTAATAAATTAGTA
* * *
24472 TTATTTTATTTCAAATAAACTTGTGTGAATAG-AAATAATTGTTTTATGAGA
130 TTATTTTATTTCAAATAAGCTTGTATGAA-AGAAAAT-ATTGTTTTATGACA
* ** * * * *
24523 TAACAAAAGGTTGTAACAATTTGAAATATATAATTGTTCAAATTGTCATAACTATTTGAACTGG-
1 AAACAAAAGGTCATAACGATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTGGT
** *
24587 -TGCAGTAAACAGA-TTAAATTTTAAATC--TT--TTATTAATTTTTGAAATATTAGTAAATTAG
66 TTG-A-TAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTG-AATATTAATAAATTAG
* * *
24646 TATTATTTTATTCCAAATAGGCTTATATGATGAA-AAACA-ATTGTTTTATGACA
128 TATTATTTTATTTCAAATAAGCTTGTATGA--AAGAAA-ATATTGTTTTATGACA
24699 A
1 A
24700 TATTAATTTT
Statistics
Matches: 846, Mismatches: 187, Indels: 92
0.75 0.17 0.08
Matches are distributed among these distances:
175 1 0.00
176 79 0.09
177 125 0.15
178 14 0.02
179 112 0.13
180 61 0.07
181 415 0.49
182 38 0.04
183 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (179 bp):
AAACAAAAGGTCATAACGATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTGGT
TTGATAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAATATTAATAAATTAGTAT
TATTTTATTTCAAATAAGCTTGTATGAAAGAAAATATTGTTTTATGACA
Found at i:24944 original size:20 final size:19
Alignment explanation
Indices: 24919--24962 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
24909 TTTTATTATG
24919 AATAATT-TTGTATGAATAGA
1 AATAATTATTGTAT-AATA-A
*
24939 AATAATTATTTTATAATAA
1 AATAATTATTGTATAATAA
24958 AATAA
1 AATAA
24963 AATGTCATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 6 0.27
20 11 0.50
21 5 0.23
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (19 bp):
AATAATTATTGTATAATAA
Found at i:25356 original size:181 final size:179
Alignment explanation
Indices: 24700--25873 Score: 948
Period size: 181 Copynumber: 6.5 Consensus size: 179
24690 TTTATGACAA
* * * * * *
24700 TATTAATTTTTTAAATTTTAATAAATTATTATTACTATATTTGGAATAAGCATGTATGAACT-GA
1 TATTAATTTTTGAAATATTAATAAATTAATATTATTTTATTT-GAATAAGCTTGTATGAA-TAGA
* * * * * * * *
24764 AACAATTATTTTTTGACTAAACAAAAGATCAAAATAATTTGGAATAGATAATTGTTCTAATAATC
64 AACAATTATTTTATGACAAAACAAAAG-TCATAATGATTTGAAATAGATAATTATTCAAATAGTC
* * *
24829 TTAACTATTTGAAC-TGATTTAGAAAACAAATTTA-TTTTTAAATC-----CT
128 ATAACTATTTGAACTTG-TTCAGTAAACAAATTTATTTTTTAAATCTTTTACT
* ** **
24875 TATTAATTTTTGAAATAGTAATAAATTGGTATTATTTTATTATGAATAATTTTGTATGAATAGAA
1 TATTAATTTTTGAAATATTAATAAATTAATATTATTTTATT-TGAATAAGCTTGTATGAATAGAA
* * * * * * **
24940 ATAATTATTTTATAATAAAATAAAATGTCATAATGACTTGAAATAAATAACAATTCAAATAGAT-
65 ACAATTATTTTATGACAAAACAAAA-GTCATAATGATTTGAAATAGATAATTATTCAAATAG-TC
* * * * * * *
25004 ATGACTATTTAAACTTGTTCGGTAAATAAATTTAGTTTTTAAATCTCTAACT
128 ATAACTATTTGAACTTGTTCAGTAAACAAATTTATTTTTTAAATCTTTTACT
* * * ** * *
25056 TATTAATTTTT-AGAATAATAATAAAATTAGTATTATTTCATTCCAAATAAACTTGTGTGAATAG
1 TATTAATTTTTGA-AATATTAAT-AAATTAATATTATTTTATT-TGAATAAGCTTGTATGAATAG
* * *
25120 AAACAATTATTTTATGACAAAACAAAAGATCATAAAGATTTGAAATATATAATTGTTCAAATAGT
63 AAACAATTATTTTATGACAAAACAAAAG-TCATAATGATTTGAAATAGATAATTATTCAAATAGT
* * * * * *
25185 AATAACTATTTAAACTTGCTCGGTAAATAAATTTATTATTTAAATCTTTTACT
127 CATAACTATTTGAACTTGTTCAGTAAACAAATTTATTTTTTAAATCTTTTACT
* *
25238 TATTAATTTTAGAAATATTAATACATTAATATTATTTTATTTCGAATAAGCTTGTATGAATAGAA
1 TATTAATTTTTGAAATATTAATAAATTAATATTATTTTATTT-GAATAAGCTTGTATGAATAGAA
* ** * * *
25303 ATAATTGGTTTATGACAAAACAAATTGTCATAATGATTTGAAATAGATAATTGTTTAAATAGTCA
65 ACAATTATTTTATGACAAAACAAA-AGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCA
** * *
25368 TAACTA-TTGAA-TGTGTTCAAAAAACATATTTATTTTTTAAAT-TTTTATT
129 TAACTATTTGAACT-TGTTCAGTAAACAAATTTATTTTTTAAATCTTTTACT
* * * * * * * *
25417 TATTAATTTTTGGAGTTTTAATAAATTTATATTATTTTATTTGAAACAACCTTGCATGAACAG-A
1 TATTAATTTTTGAAATATTAATAAATTAATATTATTTTATTTG-AATAAGCTTGTATGAATAGAA
* * * * * *
25481 ACTAATTATTTTATGACAAAACAAATGGTTATAATGTTTTGAAATAGATAATTATTTAGATAGTT
65 AC-AATTATTTTATGACAAAACAAA-AGTCATAATGATTTGAAATAGATAATTATTCAAATAGTC
* * * * ** *
25546 ATACCTATTTGAACTTGTTCAGTAAATAGATTCATTTTTTTGA--TTCT-CT
128 ATAACTATTTGAACTTGTTCAGTAAACAAATTTATTTTTTAAATCTTTTACT
** ** * * * *
25595 TATTAATTTTTGGTATATTAATAAATTAGA-GCTATTTTATTTCAAATAAGCTTATGTTAACTA-
1 TATTAATTTTTGAAATATTAATAAATTA-ATATTATTTTATTT-GAATAAGCTTGTATGAA-TAG
* * * * * *
25658 AAACAATTATTTTATTACAAAATAGAAGGTGACAATTATTTGAAATAGATAATTATTCAAATAGT
63 AAACAATTATTTTATGACAAAACA-AAAGTCATAATGATTTGAAATAGATAATTATTCAAATAGT
* * * * * *
25723 CTTGACTATTTGAACTTGTTTC-GTAAACATATTTATTTTTTTAATCTTTCACC
127 CATAACTATTTGAACTTG-TTCAGTAAACAAATTTATTTTTTAAATCTTTTACT
* ** * * * *
25776 TATTAATTGTCAAAATATTAATAAATTAACATTATTTCAATTTGAATAAGCTTGTATGAACAAAA
1 TATTAATTTTTGAAATATTAATAAATTAATATTATTT-TATTTGAATAAGCTTGTATGAATAGAA
* * *
25841 AAAATTGTTTTATTACAAAACAAAAAGTCATAA
65 ACAATTATTTTATGACAAAAC-AAAAGTCATAA
25874 CAATTCTATT
Statistics
Matches: 798, Mismatches: 165, Indels: 66
0.78 0.16 0.06
Matches are distributed among these distances:
174 1 0.00
175 119 0.15
176 15 0.02
178 130 0.16
179 131 0.16
180 57 0.07
181 189 0.24
182 155 0.19
183 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (179 bp):
TATTAATTTTTGAAATATTAATAAATTAATATTATTTTATTTGAATAAGCTTGTATGAATAGAAA
CAATTATTTTATGACAAAACAAAAGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATA
ACTATTTGAACTTGTTCAGTAAACAAATTTATTTTTTAAATCTTTTACT
Found at i:25719 original size:538 final size:534
Alignment explanation
Indices: 24700--25878 Score: 1216
Period size: 538 Copynumber: 2.2 Consensus size: 534
24690 TTTATGACAA
* * * * * *
24700 TATTAATTTTTTAAATTTTAATAAATTATTATTACTATATTTGGAATAAGCATGTATGAACT-GA
1 TATTAA-TTTTAAAATATTAATAAATTAATATTATTTTATTT-GAATAAGCTTGTATGAA-TAGA
* * * * * *
24764 AACAATTATTTTTTGACTAAACAAAAGATCAAAATAATTTGGAATAGATAATTGTTCTAATAATC
63 AAAAATTGTTTTATGACAAAACAAAAG-TCATAATAATTTGAAATAGATAATTGTTCTAATAATC
* * *
24829 TTAACTATTTGAACTGATTTAGAAAACAAATTTATTTTTAAATCCTTATTAATTTTTGAAATAGT
127 ATAACTATTTGAACTGATTTAAAAAACAAATTTATTTTTAAATACTTATTAATTTTTGAAATAGT
* * ** * * *
24894 AATAAATTGGTATTATTTTATTATGAATAATTTTGTATGAATAGAAATAATTATTTTATAATAAA
192 AATAAATTGATATTATTTTATTATGAACAACCTTGCATGAACAGAAATAATTATTTTATAACAAA
24959 ATAAAATGTCATAATGACTTGAAATAAATAACAATTCAAATAGATATGACTATTTAAACTTGTTC
257 ATAAAATGTCATAATGACTTGAAATAAATAACAATTCAAATAGATATGACTATTTAAACTTGTTC
* * *
25024 GGTAAATAAATTTAGTTTTTAAATCTCTAACTTATTAATTTTTAGAATAATAATAAAATTAGTAT
322 AGTAAATAAATTCAGTTTTTAAATCTCT-ACTTATTAATTTTTAGAATAATAATAAAATTAGTAC
* *
25089 TATTTCATTCCAAATAAACTTGTGTGAATAGAAACAATTATTTTATGACAAAACAAAAGATCATA
386 TATTTCATTCCAAATAAACTTATGTGAATAGAAACAATTATTTTATGACAAAACAAAAGATCACA
* * *
25154 AAGATTTGAAATATATAATTGTTCAAATAGTAATAACTATTTAAACTTG-CTCGGTAAATAAATT
451 AAGATTTGAAATAGATAATTATTCAAATAGTAATAACTATTTAAACTTGTCTC-GTAAACAAATT
* *
25218 TATTATTTAAATCTTTTACT
515 TATTATTTAAATCTTTCACC
*
25238 TATTAATTTTAGAAATATTAATACATTAATATTATTTTATTTCGAATAAGCTTGTATGAATAGAA
1 TATTAATTTTA-AAATATTAATAAATTAATATTATTTTATTT-GAATAAGCTTGTATGAATAGAA
* * * * *
25303 ATAATTGGTTTATGACAAAACAAATTGTCATAATGATTTGAAATAGATAATTGTT-TAAATAGTC
64 AAAATTGTTTTATGACAAAACAAA-AGTCATAATAATTTGAAATAGATAATTGTTCT-AATAATC
* *
25367 ATAACTA-TTGAA-TG-TGTTCAAAAAACATATTTATTTTTTAAATTTTTATTTATTAATTTTTG
127 ATAACTATTTGAACTGAT-TT-AAAAAACAAATTTA-TTTTTAAA----TACTTATTAATTTTTG
* * ** * *
25429 GAGTTTTAATAAATTTATATTATTTTATT-TGAAACAACCTTGCATGAACAGAACTAATTATTTT
185 AAATAGTAATAAATTGATATTATTTTATTATG-AACAACCTTGCATGAACAGAAATAATTATTTT
* * * ** * ** * * *
25493 ATGACAAAA-CAAATGGTTATAATGTTTTGAAATAGATAATTATTTAGATAGTTAT-ACCTATTT
249 ATAACAAAATAAAAT-GTCATAATGACTTGAAATAAATAACAATTCAAATAGATATGA-CTATTT
* * * ** * * *
25556 GAACTTGTTCAGTAAATAGATTCATTTTTTTGAT-TCT-CTTATTAATTTTTGGTATATTAAT-A
312 AAACTTGTTCAGTAAATAAATTCAGTTTTTAAATCTCTACTTATTAATTTTTAGAATAATAATAA
* * * * * *
25618 AATTAG-AGCTATTTTATTTCAAATAAGCTTATGTTAACTA-AAACAATTATTTTATTACAAAAT
377 AATTAGTA-CTATTTCATTCCAAATAAACTTATGTGAA-TAGAAACAATTATTTTATGACAAAAC
* * * ** ** * * *
25681 AGAAGGTGACAATTATTTGAAATAGATAATTATTCAAATAGTCTTGACTATTTGAACTTGTTTCG
440 AAAAGATCACAAAGATTTGAAATAGATAATTATTCAAATAGTAATAACTATTTAAACTTGTCTCG
* * *
25746 TAAACATATTTATTTTTTTAATCTTTCACC
505 TAAACAAATTTATTATTTAAATCTTTCACC
* * * * *
25776 TATTAATTGTCAAAATATTAATAAATTAACATTATTTCAATTTGAATAAGCTTGTATGAACAAAA
1 TATTAATT-TTAAAATATTAATAAATTAATATTATTT-TATTTGAATAAGCTTGTATGAATAGAA
* *
25841 AAAATTGTTTTATTACAAAACAAAAAGTCATAACAATT
64 AAAATTGTTTTATGACAAAAC-AAAAGTCATAATAATT
25879 CTATTTACAA
Statistics
Matches: 525, Mismatches: 96, Indels: 40
0.79 0.15 0.06
Matches are distributed among these distances:
535 1 0.00
536 4 0.01
537 24 0.05
538 317 0.60
539 35 0.07
541 10 0.02
542 134 0.26
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (534 bp):
TATTAATTTTAAAATATTAATAAATTAATATTATTTTATTTGAATAAGCTTGTATGAATAGAAAA
AATTGTTTTATGACAAAACAAAAGTCATAATAATTTGAAATAGATAATTGTTCTAATAATCATAA
CTATTTGAACTGATTTAAAAAACAAATTTATTTTTAAATACTTATTAATTTTTGAAATAGTAATA
AATTGATATTATTTTATTATGAACAACCTTGCATGAACAGAAATAATTATTTTATAACAAAATAA
AATGTCATAATGACTTGAAATAAATAACAATTCAAATAGATATGACTATTTAAACTTGTTCAGTA
AATAAATTCAGTTTTTAAATCTCTACTTATTAATTTTTAGAATAATAATAAAATTAGTACTATTT
CATTCCAAATAAACTTATGTGAATAGAAACAATTATTTTATGACAAAACAAAAGATCACAAAGAT
TTGAAATAGATAATTATTCAAATAGTAATAACTATTTAAACTTGTCTCGTAAACAAATTTATTAT
TTAAATCTTTCACC
Found at i:25931 original size:16 final size:17
Alignment explanation
Indices: 25899--25931 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
25889 ATTTATTTTA
25899 AATAATTATGACTATTTG
1 AATAATTAT-ACTATTTG
25917 AATAATTAT-CTATTT
1 AATAATTATACTATTT
25932 CAAATTGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (17 bp):
AATAATTATACTATTTG
Found at i:26277 original size:181 final size:180
Alignment explanation
Indices: 25902--26397 Score: 485
Period size: 181 Copynumber: 2.7 Consensus size: 180
25892 TATTTTAAAT
* * *
25902 AATTATGACTATTTGAATAATTATCTATTTCAAATTGTTATTATCTTTTGTTTTGTCATAAAACA
1 AATTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAAC-
* * * * *
25967 AATGTTTTTGTTCATATAATTTTGTTTGGAATAAAATAATATTAATTTATTAATATTTCAAAAAT
65 AATTTTTTTATTCATATAATCTTATTTGGAATAAAATAATACTAATTTATTAATATTTCAAAAAT
* * **
26032 TAATACATAAGAGATTTAAAAAATAAATCTGTTTGCCATACCAGTTCAATT
130 TAATACATAAGAGATTTAAAAAATAAATCTGTGTGCCATACCAGTGCAAAC
* * * * * ** * *
26083 AGTTATAACTATTTGACCAAATATTTATTTCAAATCATTATGACCATTTGTTTTATCATAAAACA
1 AATTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACA
* * * **
26148 ATTTTTTCTATTCATATAATCTTATTTGGAATAAAGTAATGCTAATTTATTAGTATTTTGAAAAT
66 ATTTTTT-TATTCATATAATCTTATTTGGAATAAAATAATACTAATTTATTAATATTTCAAAAAT
* * ** * * **
26213 TAATA-AGTAATG-GGTTTAGAAAATGTATCT-TGTGGCTTGATTAGTGCAAAC
130 TAATACA-TAA-GAGATTTAAAAAATAAATCTGTGTGCCAT-ACCAGTGCAAAC
* * *
26264 AATTATGACTATTTGAACAATTATCTATTTTAAATTGTTATGACCTTTTGCTTTGTCACAAAACA
1 AATTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACA
* * * * * ** ** * * *
26329 ATTGTTTTGTTGATACAAGCTTATTCAGAATAGCATAATTCTAATTTATTAATATTCCAAAAATG
66 ATTTTTTTATTCATATAATCTTATTTGGAATAAAATAATACTAATTTATTAATATTTCAAAAATT
26394 AATA
131 AATA
26398 TGTTTACTAA
Statistics
Matches: 249, Mismatches: 62, Indels: 9
0.78 0.19 0.03
Matches are distributed among these distances:
180 60 0.24
181 188 0.76
182 1 0.00
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.43
Consensus pattern (180 bp):
AATTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACA
ATTTTTTTATTCATATAATCTTATTTGGAATAAAATAATACTAATTTATTAATATTTCAAAAATT
AATACATAAGAGATTTAAAAAATAAATCTGTGTGCCATACCAGTGCAAAC
Found at i:26293 original size:16 final size:17
Alignment explanation
Indices: 26261--26293 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
26251 GATTAGTGCA
26261 AACAATTATGACTATTTG
1 AACAATTAT-ACTATTTG
26279 AACAATTAT-CTATTT
1 AACAATTATACTATTT
26294 TAAATTGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.42
Consensus pattern (17 bp):
AACAATTATACTATTTG
Found at i:27203 original size:180 final size:179
Alignment explanation
Indices: 26513--27348 Score: 780
Period size: 181 Copynumber: 4.7 Consensus size: 179
26503 AGCTTATTTC
* * * ** * * *
26513 AAATCTGTTTACCGAATAATTTTGAATAGTTATGATTA-TTGAAACAATTATTTATTTCAAATTG
1 AAATATGTTTACCGAACAAGTTCAAATAGTTATGACTATTTG-AACAATTATCTATTTCAAATCG
* * * * * * *
26577 TTATGACCTTTTGTTTTGTTATAAAACAATTTTTTTTTTGTTCATATTAGTTTATTTG-GATAAA
65 TTATGACCTTTTGTTTTGTCATAAAACAA--TTGTTTCTATTCATATAAGCTTATTTGAAAT-AA
* * *
26641 AATAATATTAATTTATTAATATTTCAACAATTAATAAGTAAAAGATTTGAAAAAT
127 AATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAAA-ATTT-AAAAAT
* * * * *
26696 AAATATGTTTACCGAACAAG-TCAAATAGTAATAACTATCTAAATAATTAT-TATTTCAAATCGT
1 AAATATGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGT
* * * * * * * * **
26759 TATAACTTTTTGTTTCG-CTATAAAACAATTATATCAATTCATATAGGCTTACTCAAAATAAAAT
66 TATGACCTTTTGTTTTGTC-ATAAAACAATTGTTTCTATTCATATAAGCTTATTTGAAATAAAAT
* * * *
26823 AATACTAACTTATTACTATTCCAAAAATTAATGAGTAAGAGATTTAAAAAAT
130 AATACTAATTTATTAATATTCCAAAAATTAATAAGTAA-AAATTT-AAAAAT
* * * * *
26875 GAATCTATTTACCAAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTGT
1 AAATATGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGT
* * * *
26940 TATGACTTTTTGTTTTGCCATAAAACAATTGTTTCTATTCATACAAGCTTATTTCAAATAAAATA
66 TATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATATAAGCTTATTTGAAATAAAATA
* * *
27005 ATA-TAAATTTACTAATATTCCAAACATTAATAAGTAAAAATATATAAAAT
131 ATACT-AATTTATTAATATTCCAAAAATTAATAAGTAAAAATTTA-AAAAT
* *** *
27055 AAATTTGTTTTTTGAACATGTTCAAAATAGTTATGACCT-TTTGAACAATTATCTATTTCAAATC
1 AAATATGTTTACCGAACAAGTTC-AAATAGTTATGA-CTATTTGAACAATTATCTATTTCAAATC
* * * *
27119 ATTACGACCTTTTGTTTT-TCATAAACCAATTGTTTCTATTCATAAAAGCTTATTTGAAATAAAA
64 GTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATATAAGCTTATTTGAAATAAAA
* *
27183 TAATACTAATTTATTAATATTTCAAAAATTAATAAG---AGATTTAAAAACT
129 TAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAAAATTTAAAAA-T
* * * * * * * * *
27232 ATATTTGTTTATCGGACCA-TTCAAATAGTTATGATTATTTGAATAATTATCTATCTCAAATCGG
1 AAATATGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGT
* * * * * *
27296 TATGATC-TTTGTTTTGTCGTAAAACAATTGTTTCTGTCCATACAACCTTATTT
66 TATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATATAAGCTTATTT
27349 AGAGTAAAAT
Statistics
Matches: 535, Mismatches: 103, Indels: 38
0.79 0.15 0.06
Matches are distributed among these distances:
174 9 0.02
175 71 0.13
176 7 0.01
177 19 0.04
179 80 0.15
180 126 0.24
181 182 0.34
182 23 0.04
183 18 0.03
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.41
Consensus pattern (179 bp):
AAATATGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGT
TATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATATAAGCTTATTTGAAATAAAATA
ATACTAATTTATTAATATTCCAAAAATTAATAAGTAAAAATTTAAAAAT
Found at i:27481 original size:124 final size:124
Alignment explanation
Indices: 27250--27482 Score: 274
Period size: 124 Copynumber: 1.9 Consensus size: 124
27240 TTATCGGACC
* * * * ** *
27250 ATTCAAATAGTTATGATTATTTGAATAATTATCTATCTCAAATCGGTATGATCTTTGTTTTGTCG
1 ATTCAAATAGTTAAGACTATTTGAATAATTATCTATCTCAAATCAGTATGATCTTTGGTTAATCA
* *
27315 TAAAACAATTGTTTCTGTCCATACAACCTTATTTAGAGTAAAATGTATTTGTTGAACCA
66 TAAAACAATTGTTTCAGTCCATACAACCTTATTTAGAATAAAATGTATTTGTTGAACCA
* * *
27374 ATTCAAATAGTTAAGACTATTAT-AATAATTATCTATTTCAAATCATTCTGATCTTTTGGTTAAT
1 ATTCAAATAGTTAAGACTATT-TGAATAATTATCTATCTCAAATCAGTATGATC-TTTGGTTAAT
* * **
27438 CATAAAATAATTGTTT-AGTTCATACATGCTTATTT-GAAATAAAAT
64 CATAAAACAATTGTTTCAGTCCATACAACCTTATTTAG-AATAAAAT
27483 AATACTATTT
Statistics
Matches: 90, Mismatches: 16, Indels: 6
0.80 0.14 0.05
Matches are distributed among these distances:
123 1 0.01
124 67 0.74
125 22 0.24
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.42
Consensus pattern (124 bp):
ATTCAAATAGTTAAGACTATTTGAATAATTATCTATCTCAAATCAGTATGATCTTTGGTTAATCA
TAAAACAATTGTTTCAGTCCATACAACCTTATTTAGAATAAAATGTATTTGTTGAACCA
Found at i:27792 original size:181 final size:179
Alignment explanation
Indices: 27375--27923 Score: 503
Period size: 181 Copynumber: 3.1 Consensus size: 179
27365 GTTGAACCAA
* * * * * * *
27375 TTCAAATAGTTAAGACTA-TTATAATAATTATCTATTTCAAATCATTCTGATCTTTTGGTTAATC
1 TTCAAATAGTTATGACCATTTA-AACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTATC
* * * * *
27439 ATAAAATAATTGTTTAGTTCATACATGCTTATTTGAAATAAAATAATACTATTTTATTAACA-TT
65 ATAAAACAATTGTTTATTTCATACAAGCTTA-TTAAAATAAAATAATACTATTTTATTAATATTT
*
27503 CAAAAAATTAATAAGCAAGGAATTAAAAAATAAATCTGTTTACAAAATAAG
129 CAAAAAATTAAGAAGCAAGGAATTAAAAAATAAATCTGTTTACAAAATAAG
* * * * * *
27554 TTTAAATATTTATGACTATTTAAACAAGTT-T-TATTTTAAAATCGTTATGACCTTTTGTTTTAT
1 TTCAAATAGTTATGACCATTTAAACAA-TTATCTA-TTTCAAATCATTATGAACTTTTGTTTTAT
* * *
27617 CATAAAACAATTGTTTCATTTCATAAAAGCTTATCCAAAATAAAATAATATTATTTTATTAATAT
64 CATAAAACAATTGTTT-ATTTCATACAAGCTTAT-TAAAATAAAATAATACTATTTTATTAATAT
** * * *
27682 TTCAAAAAA-TAAGAAG-TTGGAGATTTAAAACATAAATCAT-TTTATC-GAATCAG
127 TTCAAAAAATTAAGAAGCAAGGA-A-TTAAAAAATAAATC-TGTTTA-CAAAATAAG
* * * *
27735 TTCAAATAGTTATGGCCATTTGAACAATTATCTATTTCAAATCATTTTGAACTTTTGTTTTGTCA
1 TTCAAATAGTTATGACCATTTAAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTATCA
* * * *
27800 TAAAACAATTATTT-TTCATCATACAAGCCTAATTAGAATAAAATAATACTAATTTATTAATATT
66 TAAAACAATTGTTTATT--TCATACAAG-CTTATTAAAATAAAATAATACTATTTTATTAATATT
* * * * * * **
27864 TC-AAAAATTAATAAG--A-GATTTAAAAATTAAATATGTTTGCTAAACCAG
128 TCAAAAAATTAAGAAGCAAGGAATTAAAAAATAAATCTGTTTACAAAATAAG
27912 TTCAAATAGTTA
1 TTCAAATAGTTA
27924 AAACAATTAG
Statistics
Matches: 302, Mismatches: 50, Indels: 38
0.77 0.13 0.10
Matches are distributed among these distances:
176 2 0.01
177 31 0.10
178 2 0.01
179 66 0.22
180 57 0.19
181 136 0.45
182 8 0.03
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (179 bp):
TTCAAATAGTTATGACCATTTAAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTATCA
TAAAACAATTGTTTATTTCATACAAGCTTATTAAAATAAAATAATACTATTTTATTAATATTTCA
AAAAATTAAGAAGCAAGGAATTAAAAAATAAATCTGTTTACAAAATAAG
Found at i:27979 original size:177 final size:178
Alignment explanation
Indices: 27655--27984 Score: 400
Period size: 177 Copynumber: 1.8 Consensus size: 178
27645 GCTTATCCAA
* *
27655 AATAAAATAATATTATTTTATTAATATTTCAAAAAATAAGAAGTTGGAGATTTAAAACATAAATC
1 AATAAAATAATACTAATTTATTAATATTTCAAAAAATAAGAA---GGAGATTTAAAACATAAATC
* * *** * * * **
27720 ATTTTATCGAATCAGTTCAAATAGTTATGGCCATTTGAACAATTATCTATTTCAAATCATTTTGA
63 ATTTTATCAAACCAGTTCAAATAGTTAAAACAATTAGAACAATTATCTATTTCAAATCAGTTCAA
*
27785 ACTTTTGTTTTGTCATAAAACAATTATTTTTCATCATACAAGCCTAATTAG
128 ACTTTTGTTTAGTCATAAAACAATTATTTTTCATCATACAAGCCTAATTAG
* *
27836 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAA-GAGATTTAAAA-ATTAAAT-AT
1 AATAAAATAATACTAATTTATTAATATTTCAAAAAATAAGAAGGAGATTTAAAACA-TAAATCAT
* * *
27898 GTTT-GCTAAACCAGTTCAAATAGTTAAAACAATTAGAATAATTATCTATTTGAAAT-AGTTCAA
65 -TTTATC-AAACCAGTTCAAATAGTTAAAACAATTAGAACAATTATCTATTTCAAATCAGTTCAA
27961 ACCTTTTGTTTAGTCATAAAACAA
128 A-CTTTTGTTTAGTCATAAAACAA
27985 AACAATTATT
Statistics
Matches: 127, Mismatches: 18, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
176 9 0.07
177 80 0.63
181 38 0.30
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.38
Consensus pattern (178 bp):
AATAAAATAATACTAATTTATTAATATTTCAAAAAATAAGAAGGAGATTTAAAACATAAATCATT
TTATCAAACCAGTTCAAATAGTTAAAACAATTAGAACAATTATCTATTTCAAATCAGTTCAAACT
TTTGTTTAGTCATAAAACAATTATTTTTCATCATACAAGCCTAATTAG
Found at i:28741 original size:16 final size:17
Alignment explanation
Indices: 28720--28752 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
28710 CAATGATTTG
28720 AAATAG-ATAATTATTC
1 AAATAGCATAATTATTC
28736 AAATAGCCATAATTATT
1 AAATAG-CATAATTATT
28753 TTAATTGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.09, G:0.06, T:0.36
Consensus pattern (17 bp):
AAATAGCATAATTATTC
Found at i:28828 original size:359 final size:360
Alignment explanation
Indices: 28356--29511 Score: 814
Period size: 359 Copynumber: 3.2 Consensus size: 360
28346 GGTTTGAACT
* * *** * *
28356 ATTTGAAATAGATAATTATTCTAATTGTTTTAACTATTTGAACTGGTTTAGCAAACATATTTAAT
1 ATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTGAACTGATTTAGCAAACAGATTTAAT
** * *
28421 TTTTAAATCTCTTATTAATTTTTGAAATATTATTAAATTAGTATTATTTT-TAACCGA-ATAGGC
66 TTTTAAATCTCTTATTAATTTAGGAAATATTAATAAATTAGTATTATTTTAT-ACC-ATATAAGC
* * * * *
28484 TTCTA-TGA-TTAGAAAACAATTGTTTTATGAAAAAATAAAA-ATTTTAACGATTTGAGATTGAT
129 TTCTATTAACTT---AAACAATTGTTTTATGAAAAAATAAAAGATTATAACGATTTGAAATAGAC
* * * * * *
28546 AATTGTTCAAATAGTCATAATTATTTGAAC-TGTTTTGGTAAAAAGATTTATTGTTTAAATTTGT
191 AATTGTTCAAATAATAATAACTATTTGAACTTG-TTCGGCAAAAAGATTTATTGTTTAAATTTCT
* * *
28610 TACC-TATT-ATTTTTGAAATATTAATCAATTAGTATCATTTTATTTTGAATAAGCTTGTATGAT
255 T-CCTTATTAATTTTTCAAATATTAATAAATTAGTATCAATTTATTTTGAATAAGCTTGTATGA-
28673 AAAAAAACAATTGTATTATGAC-AAAATAAAAAGGTCACAATG
318 AAAAAAACAATTGTATTATGACTAAAATAAAAAGGTCACAATG
* * * * *
28715 ATTTGAAATAGATAATTATTCAAATAGCCATAATTATTTTAATTGATTTGGTAAACAGATTT-AT
1 ATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTGAACTGATTTAGCAAACAGATTTAAT
* * * *
28779 TTTTAAAATTTCTTATTAATTTAGGAAGTATTAATAAATTAGTATTATTTTATTCCATCTAAGCT
66 TTTT-AAATCTCTTATTAATTTAGGAAATATTAATAAATTAGTATTATTTTATACCATATAAGCT
* * * * * * *
28844 TGTATTAACTTAAACAATTGTTTTATGACAAATTAAAAGGTTATAATGTTTTTAAATAGACAATT
130 TCTATTAACTTAAACAATTGTTTTATGAAAAAATAAAAGATTATAACGATTTGAAATAGACAATT
* * *
28909 GTTCGAATAATAATAACTATTTGAACTTGTTCGGCAAACAGATTTATTTTTTAAATTTCTTCCTT
195 GTTCAAATAATAATAACTATTTGAACTTGTTCGGCAAAAAGATTTATTGTTTAAATTTCTTCCTT
* * ***
28974 ATTAATTTTTCAAATGTTAATAAATTAGTATTAATTTATTTTGAATAAGCTTGTATGAATTGAAA
260 ATTAATTTTTCAAATATTAATAAATTAGTATCAATTTATTTTGAATAAGCTTGTATGAAAAAAAA
* * * **
29039 CAATTGTTTTATGACT--AA-AAAATGGTCAAAACA
325 CAATTGTATTATGACTAAAATAAAAAGGTCACAATG
* * ** * * * * * ** * * * *
29072 ATTTGAAGTATATAATTATTTTAATAGTCTTAACCATTTGAAATGATTCAATAGATAAATTTATT
1 ATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTGAACTGATTTAGCAAACAGATTTAAT
*** **
29137 TTTTAAATCTCTTACTTATTAATTTTTTAAATATT-ATGAAATTAGTATTATTTTAATATGA-AT
66 TTTTAAA--TC-T-CTTATTAATTTAGGAAATATTAAT-AAATTAGTATTATTTT-ATACCATAT
* ** * * * **
29200 AAGCTTGTACAAAC-AAAACAATTGTTTTATGATGAAAGA-AAAAG-TCATAATAATTTGAAATA
125 AAGCTTCTATTAACTTAAACAATTGTTTTATGA--AAAAATAAAAGATTATAACGATTTGAAATA
* ** *** * ** * * ** * *
29262 GATAATCATTTTTATAGTTTTAACTATTTGAA-TTGGTTCAGTAATTAGATTTATTTTTTAATTT
188 GACAATTGTTCAAATAATAATAACTATTTGAACTT-GTTCGGCAAAAAGATTTATTGTTTAAATT
* ** * ** * * * * * * ** *
29326 TTTTGGTTATTAAGTTTTGGAATATTATTAAATTTGCATTATTTTATTTCGAATAAAATAGTAT-
252 TCTTCCTTATTAATTTTTCAAATATTAATAAATTAGTATCAATTTATTTTGAATAAGCTTGTATG
* * * * * *
29390 AAATAGAACAAAT-TATTTGATGAC-AAAAT-AAAAGGTTATAATT
317 AAAAAAAACAATTGTA-TT-ATGACTAAAATAAAAAGGTCACAATG
* * * * * *
29433 ATTTGAAATAGATAATTATTCAAATAGTCAAAACTATTTGTAA-T-AGTTTGGTAAGCATATTTA
1 ATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTG-AACTGA-TTTAGCAAACAGATTTA
*
29496 CTTTTTAAATCTCTTA
64 ATTTTTAAATCTCTTA
29512 CTGATTATAT
Statistics
Matches: 626, Mismatches: 144, Indels: 56
0.76 0.17 0.07
Matches are distributed among these distances:
357 64 0.10
358 43 0.07
359 206 0.33
360 190 0.30
361 116 0.19
362 7 0.01
ACGTcount: A:0.39, C:0.07, G:0.11, T:0.44
Consensus pattern (360 bp):
ATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTGAACTGATTTAGCAAACAGATTTAAT
TTTTAAATCTCTTATTAATTTAGGAAATATTAATAAATTAGTATTATTTTATACCATATAAGCTT
CTATTAACTTAAACAATTGTTTTATGAAAAAATAAAAGATTATAACGATTTGAAATAGACAATTG
TTCAAATAATAATAACTATTTGAACTTGTTCGGCAAAAAGATTTATTGTTTAAATTTCTTCCTTA
TTAATTTTTCAAATATTAATAAATTAGTATCAATTTATTTTGAATAAGCTTGTATGAAAAAAAAC
AATTGTATTATGACTAAAATAAAAAGGTCACAATG
Found at i:29185 original size:180 final size:179
Alignment explanation
Indices: 28950--29381 Score: 474
Period size: 180 Copynumber: 2.4 Consensus size: 179
28940 CGGCAAACAG
* * *
28950 ATTTATTTTTTAAATTTCTTCCTTATTAATTTTTCAAATGTTAATAAATTAGTATTAATTTATTT
1 ATTTATTTTTTAAATTTCTTACTTATTAATTTTTCAAATATT-ATAAATTAGTATTATTTTATTT
* *** **
29015 TGAATAAGCTTGTATGAATTGAAACAATTGTTTTATGACT-AAA-AAATGGTCAAAACAATTTGA
65 TGAATAAGCTTGTA-CAAACAAAACAATTGTTTTATGA-TGAAAGAAAAAGTCAAAACAATTTGA
* * *
29078 AGTATATAATTATTTTAATAGTCTTAACCATTTGAAATGATTCAATAGA-TAA
128 AATAGATAATCATTTTAATAGTCTTAACCATTTGAAATGATTCAATA-ATTAA
* * * *
29130 ATTTATTTTTTAAATCTCTTACTTATTAATTTTTTAAATATTATGAAATTAGTATTATTTTAATA
1 ATTTATTTTTTAAATTTCTTACTTATTAATTTTTCAAATATTAT-AAATTAGTATTATTTTATTT
* *
29195 TGAATAAGCTTGTACAAACAAAACAATTGTTTTATGATGAAAGAAAAAGTCATAATAATTTGAAA
65 TGAATAAGCTTGTACAAACAAAACAATTGTTTTATGATGAAAGAAAAAGTCAAAACAATTTGAAA
* * * * * * *
29260 TAGATAATCATTTTTATAGTTTTAACTATTTGAATTGGTTCAGTAATTAG
130 TAGATAATCATTTTAATAGTCTTAACCATTTGAAATGATTCAATAATTAA
* * ** * ** * *
29310 ATTTATTTTTTAATTTTTTTGGTTATTAAGTTTTGGAATATTATTAAATTTGCATTATTTTATTT
1 ATTTATTTTTTAAATTTCTTACTTATTAATTTTTCAAATATTA-TAAATTAGTATTATTTTATTT
*
29375 CGAATAA
65 TGAATAA
29382 AATAGTATAA
Statistics
Matches: 209, Mismatches: 38, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
178 1 0.00
179 25 0.12
180 182 0.87
181 1 0.00
ACGTcount: A:0.38, C:0.06, G:0.10, T:0.47
Consensus pattern (179 bp):
ATTTATTTTTTAAATTTCTTACTTATTAATTTTTCAAATATTATAAATTAGTATTATTTTATTTT
GAATAAGCTTGTACAAACAAAACAATTGTTTTATGATGAAAGAAAAAGTCAAAACAATTTGAAAT
AGATAATCATTTTAATAGTCTTAACCATTTGAAATGATTCAATAATTAA
Found at i:29459 original size:16 final size:17
Alignment explanation
Indices: 29427--29459 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
29417 ATAAAAGGTT
*
29427 ATAATTATTTGAAATAG
1 ATAATTATTTCAAATAG
29444 ATAATTA-TTCAAATAG
1 ATAATTATTTCAAATAG
29460 TCAAAACTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.48, C:0.03, G:0.09, T:0.39
Consensus pattern (17 bp):
ATAATTATTTCAAATAG
Found at i:29673 original size:16 final size:16
Alignment explanation
Indices: 29654--29687 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
29644 AATCTATACA
*
29654 ATTATTTAAATATAAT
1 ATTAATTAAATATAAT
29670 ATTAATTAAATATAAT
1 ATTAATTAAATATAAT
29686 AT
1 AT
29688 CATGAATAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
ATTAATTAAATATAAT
Found at i:30096 original size:28 final size:26
Alignment explanation
Indices: 30032--30096 Score: 62
Period size: 29 Copynumber: 2.4 Consensus size: 26
30022 TATTAGTTTT
*
30032 TATTAAA--TTATAATAAATAATAAT
1 TATTAAATTTTATAATAAATAATAAA
*
30056 TATATAATGTTTTATAAATAAATAATATAA
1 TAT-TAA-ATTTTAT-AATAAATAATA-AA
30086 TATTAAATTTT
1 TATTAAATTTT
30097 TACTTATTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
24 3 0.09
25 3 0.09
28 8 0.25
29 14 0.44
30 4 0.12
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (26 bp):
TATTAAATTTTATAATAAATAATAAA
Found at i:30117 original size:32 final size:34
Alignment explanation
Indices: 30073--30161 Score: 94
Period size: 35 Copynumber: 2.6 Consensus size: 34
30063 TGTTTTATAA
* *
30073 ATAAATAATATAATATTA-AATT-TTTACTTATT
1 ATAAATATTATAATATTATAATTATATACTTATT
* *
30105 ATAAATATTATAATTAATATAATTATATATTTATT
1 ATAAATATTATAA-TATTATAATTATATACTTATT
*
30140 ATATATAATTATAATA-TATAAT
1 ATAAAT-ATTATAATATTATAAT
30162 AAATATAATA
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
32 12 0.25
33 4 0.08
34 10 0.21
35 15 0.31
36 7 0.15
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (34 bp):
ATAAATATTATAATATTATAATTATATACTTATT
Found at i:30139 original size:26 final size:26
Alignment explanation
Indices: 30110--30159 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
30100 TTATTATAAA
30110 TATTATA-ATTAA-TATAATTATATATT
1 TATTATATA-TAATTATAA-TATATATT
30136 TATTATATATAATTATAATATATA
1 TATTATATATAATTATAATATATA
30160 ATAAATATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (26 bp):
TATTATATATAATTATAATATATATT
Found at i:30146 original size:13 final size:13
Alignment explanation
Indices: 30122--30335 Score: 71
Period size: 12 Copynumber: 16.6 Consensus size: 13
30112 TTATAATTAA
*
30122 TATAATTATATATT
1 TATAA-TATATAAT
*
30136 TATTATATATAAT
1 TATAATATATAAT
30149 TATAATATATAA-
1 TATAATATATAAT
30161 TA-AATATA-ATAT
1 TATAATATATA-AT
*
30173 TAATAA-ATA-ATT
1 T-ATAATATATAAT
*
30185 GTATAGATTTAGTAAT
1 -TATA-ATATA-TAAT
*
30201 TAGTAAAATAATAA-
1 TA-TAATAT-ATAAT
30215 TATAATAT-TAAT
1 TATAATATATAAT
*
30227 TAAAATA-ATAA-
1 TATAATATATAAT
* *
30238 AATATTTATAATAAT
1 TATA-ATAT-ATAAT
30253 TATTTAATAT-TAAT
1 TA--TAATATATAAT
*
30267 TATAATA-ATTAT
1 TATAATATATAAT
*
30279 TATAA-ATATTAT
1 TATAATATATAAT
*
30291 TA-AATATTTAAT
1 TATAATATATAAT
*
30303 ATTTAATATAT-AT
1 -TATAATATATAAT
* *
30316 AAGAATAT-TAAT
1 TATAATATATAAT
*
30328 TCTAATAT
1 TATAATAT
30336 TTATATAAAT
Statistics
Matches: 149, Mismatches: 26, Indels: 52
0.66 0.11 0.23
Matches are distributed among these distances:
10 1 0.01
11 16 0.11
12 55 0.37
13 33 0.22
14 26 0.17
15 8 0.05
16 8 0.05
17 2 0.01
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (13 bp):
TATAATATATAAT
Found at i:30161 original size:7 final size:7
Alignment explanation
Indices: 30121--30314 Score: 62
Period size: 6 Copynumber: 28.7 Consensus size: 7
30111 ATTATAATTA
30121 ATATAAT
1 ATATAAT
30128 -TATATAT
1 ATATA-AT
* *
30135 TTATTAT
1 ATATAAT
30142 ATATAAT
1 ATATAAT
30149 -TATAAT
1 ATATAAT
30155 ATATAAT
1 ATATAAT
30162 AAATATAAT
1 --ATATAAT
30171 AT-TAAT
1 ATATAAT
*
30177 AAATAATT
1 ATATAA-T
*
30185 GTATAGAT
1 ATATA-AT
*
30193 TTAGTAAT
1 ATA-TAAT
30201 -TAGTAA-
1 ATA-TAAT
30207 A-ATAAT
1 ATATAAT
30213 AATATAAT
1 -ATATAAT
30221 AT-TAAT
1 ATATAAT
*
30227 -TAAAAT
1 ATATAAT
*
30233 A-ATAAA
1 ATATAAT
*
30239 ATAT-TT
1 ATATAAT
30245 ATAATAATT
1 AT-ATAA-T
*
30254 ATTTAAT
1 ATATAAT
30261 AT-TAAT
1 ATATAAT
30267 -TATAAT
1 ATATAAT
*
30273 A-ATTAT
1 ATATAAT
30279 -TATAA-
1 ATATAAT
*
30284 ATATTAT
1 ATATAAT
30291 -TA-AAT
1 ATATAAT
*
30296 ATTTAAT
1 ATATAAT
*
30303 ATTTAAT
1 ATATAAT
30310 ATATA
1 ATATA
30315 TAAGAATATT
Statistics
Matches: 141, Mismatches: 20, Indels: 52
0.66 0.09 0.24
Matches are distributed among these distances:
5 7 0.05
6 51 0.36
7 50 0.35
8 20 0.14
9 13 0.09
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (7 bp):
ATATAAT
Found at i:30167 original size:22 final size:22
Alignment explanation
Indices: 30102--30183 Score: 78
Period size: 22 Copynumber: 3.7 Consensus size: 22
30092 ATTTTTACTT
*
30102 ATTATAAATATTATAATTAATATA
1 ATTAT-AATA-TATAATAAATATA
* * *
30126 ATTAT-ATATTTATTATATATA
1 ATTATAATATATAATAAATATA
30147 ATTATAATATATAATAAATATA
1 ATTATAATATATAATAAATATA
*
30169 A-TATTAATAAATAAT
1 ATTA-TAATATATAAT
30184 TGTATAGATT
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
21 16 0.33
22 27 0.56
24 5 0.10
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
ATTATAATATATAATAAATATA
Found at i:30167 original size:24 final size:24
Alignment explanation
Indices: 30102--30287 Score: 71
Period size: 24 Copynumber: 7.9 Consensus size: 24
30092 ATTTTTACTT
*
30102 ATTATAA-ATATTATAATTAATATA
1 ATTATAATATATTATAAAT-ATATA
*
30126 ATTAT-ATAT-TTAT-TATATATA
1 ATTATAATATATTATAAATATATA
*
30147 ATTATAATATATAATAAATATA-A
1 ATTATAATATATTATAAATATATA
* *
30170 TATTAATAA-ATAATTGTATAGATTTAGTA
1 -ATT-ATAATAT-A-T-TATAAATATA-TA
* *
30199 ATTAGTAAAATAATAATATAATAT-TA
1 ATTA-TAATAT-ATTATA-AATATATA
30225 ATTA-AA-ATA--ATAAA-ATAT-
1 ATTATAATATATTATAAATATATA
*
30243 -TTATAATA-ATTATTTAATAT-TA
1 ATTATAATATATTA-TAAATATATA
30265 ATTATAATAATTATTATAAATAT
1 ATTATAAT-A-TATTATAAATAT
30288 TATTAAATAT
Statistics
Matches: 124, Mismatches: 12, Indels: 51
0.66 0.06 0.27
Matches are distributed among these distances:
17 3 0.02
18 5 0.04
19 4 0.03
20 4 0.03
21 14 0.11
22 8 0.06
23 18 0.15
24 20 0.16
25 11 0.09
26 11 0.09
27 11 0.09
28 10 0.08
29 5 0.04
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (24 bp):
ATTATAATATATTATAAATATATA
Found at i:30232 original size:23 final size:22
Alignment explanation
Indices: 30199--30294 Score: 67
Period size: 23 Copynumber: 4.4 Consensus size: 22
30189 AGATTTAGTA
*
30199 ATTAGTAAAATAATAATATAAT
1 ATTATTAAAATAATAATATAAT
30221 ATTAATTAAAATAAT-A-A-AAT
1 ATT-ATTAAAATAATAATATAAT
* * *
30241 A-T-TTATAATAATTATTTAAT
1 ATTATTAAAATAATAATATAAT
* *
30261 ATTAATTATAATAATTATTATAAAT
1 ATT-ATTAAAATAA-TAATAT-AAT
30286 ATTATTAAA
1 ATTATTAAA
30295 TATTTAATAT
Statistics
Matches: 58, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
17 9 0.16
18 1 0.02
19 1 0.02
20 8 0.14
21 2 0.03
22 4 0.07
23 19 0.33
24 8 0.14
25 6 0.10
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (22 bp):
ATTATTAAAATAATAATATAAT
Found at i:30233 original size:20 final size:20
Alignment explanation
Indices: 30210--30275 Score: 71
Period size: 20 Copynumber: 3.3 Consensus size: 20
30200 TTAGTAAAAT
30210 AATAATATAATATTAATTAA
1 AATAATATAATATTAATTAA
* *
30230 AATAATAAAATATTTA-TAA
1 AATAATATAATATTAATTAA
* * *
30249 TAATTATTTAATATTAATTAT
1 -AATAATATAATATTAATTAA
30270 AATAAT
1 AATAAT
30276 TATTATAAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
19 3 0.08
20 31 0.86
21 2 0.06
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
AATAATATAATATTAATTAA
Found at i:30250 original size:9 final size:9
Alignment explanation
Indices: 30037--30283 Score: 74
Period size: 9 Copynumber: 29.2 Consensus size: 9
30027 GTTTTTATTA
30037 AATTATAAT
1 AATTATAAT
30046 AA--ATAAT
1 AATTATAAT
30053 AATTAT-AT
1 AATTATAAT
* *
30061 AATGTTTTAT
1 AAT-TATAAT
*
30071 AAATA-AAT
1 AATTATAAT
30079 AA-TATAAT
1 AATTATAAT
30087 -ATTA-AAT
1 AATTATAAT
* *
30094 --TTTTACT
1 AATTATAAT
*
30101 TATTATAA-
1 AATTATAAT
30109 ATATTATAATT
1 A-ATTATAA-T
30120 AA-TATAAT
1 AATTATAAT
* *
30128 TA-TATATT
1 AATTATAAT
*
30136 TATTATATAT
1 AATTATA-AT
30146 AATTATAAT
1 AATTATAAT
30155 -A-TATAAT
1 AATTATAAT
*
30162 AAATATAAT
1 AATTATAAT
30171 -ATTAATAAAT
1 AATT-AT-AAT
*
30181 AATTGT-AT
1 AATTATAAT
*
30189 AGATT-TAGT
1 A-ATTATAAT
30198 AATTAGTAA-
1 AATTA-TAAT
*
30207 AATAATAAT
1 AATTATAAT
* *
30216 -ATAATATT
1 AATTATAAT
*
30224 AATTAAAAT
1 AATTATAAT
*
30233 AA-TAAAAT
1 AATTATAAT
*
30241 ATTTATAAT
1 AATTATAAT
*
30250 AATTAT-TT
1 AATTATAAT
30258 AA-TAT--T
1 AATTATAAT
30264 AATTATAAT
1 AATTATAAT
*
30273 AATTATTAT
1 AATTATAAT
30282 AA
1 AA
30284 ATATTATTAA
Statistics
Matches: 182, Mismatches: 27, Indels: 58
0.68 0.10 0.22
Matches are distributed among these distances:
6 5 0.03
7 27 0.15
8 54 0.30
9 74 0.41
10 18 0.10
11 4 0.02
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (9 bp):
AATTATAAT
Found at i:30253 original size:52 final size:53
Alignment explanation
Indices: 30137--30255 Score: 122
Period size: 52 Copynumber: 2.3 Consensus size: 53
30127 TTATATATTT
***
30137 ATTATATATAATTATAATATATAATAAATATAATATTAATAAATAATTGTATAG
1 ATTATA-ATAATTATAATATATAATAAATATAATATTAATAAATAATAAAATAG
*
30191 ATT-TAGTAATTAGTAA-A-ATAAT-AATATAATATTAATTAAAATAATAAAATA-
1 ATTATAATAATTA-TAATATATAATAAATATAATATTAA-T-AAATAATAAAATAG
*
30242 TTTATAATAATTAT
1 ATTATAATAATTAT
30256 TTAATATTAA
Statistics
Matches: 55, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
50 13 0.24
51 9 0.16
52 25 0.45
53 5 0.09
54 3 0.05
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (53 bp):
ATTATAATAATTATAATATATAATAAATATAATATTAATAAATAATAAAATAG
Found at i:30682 original size:9 final size:9
Alignment explanation
Indices: 30639--30688 Score: 57
Period size: 9 Copynumber: 5.7 Consensus size: 9
30629 TTTATAATCT
30639 TATTATAAA
1 TATTATAAA
*
30648 TATTA-AGA
1 TATTATAAA
* *
30656 GATTATAAT
1 TATTATAAA
*
30665 TATTTTAAA
1 TATTATAAA
30674 TATTATAAA
1 TATTATAAA
30683 TATTAT
1 TATTAT
30689 TATTATTTAA
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
8 6 0.19
9 26 0.81
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (9 bp):
TATTATAAA
Found at i:30793 original size:17 final size:15
Alignment explanation
Indices: 30762--30791 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
30752 ATTTATTTAG
30762 TTTATATTTTAATAA
1 TTTATATTTTAATAA
30777 TTTATA-TTTAATAA
1 TTTATATTTTAATAA
30791 T
1 T
30792 AACTAATGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
TTTATATTTTAATAA
Found at i:31054 original size:24 final size:25
Alignment explanation
Indices: 31013--31062 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
31003 ATTAATATAA
* *
31013 TTATTATAAATAACTAATTTTAAAT
1 TTATAATAAATAACTAATTATAAAT
*
31038 TTATAATAAAT-ATTAATTATAAAT
1 TTATAATAAATAACTAATTATAAAT
31062 T
1 T
31063 GTCATAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 12 0.55
25 10 0.45
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (25 bp):
TTATAATAAATAACTAATTATAAAT
Found at i:31861 original size:19 final size:18
Alignment explanation
Indices: 31835--31888 Score: 67
Period size: 18 Copynumber: 2.9 Consensus size: 18
31825 AATTTATTAG
31835 TAAT-TTATTATTATAAAA
1 TAATATTATTATT-TAAAA
31853 TAATATTA-TATTTATAAA
1 TAATATTATTATTTA-AAA
31871 TAATAGTTATTATTTAAA
1 TAATA-TTATTATTTAAA
31889 TATTTATTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
17 2 0.06
18 16 0.50
19 8 0.25
20 6 0.19
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (18 bp):
TAATATTATTATTTAAAA
Found at i:32803 original size:23 final size:25
Alignment explanation
Indices: 32749--32805 Score: 73
Period size: 23 Copynumber: 2.3 Consensus size: 25
32739 ATTAATTATT
*
32749 TAAATTAGTATATTAATTATAATTTAA
1 TAAATTAG-ATATTAATTAT-ATATAA
32776 TAAATTAG-TATTAATTAT-TATAA
1 TAAATTAGATATTAATTATATATAA
32799 TAAATTA
1 TAAATTA
32806 TAATCAAGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
23 11 0.38
25 10 0.34
27 8 0.28
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (25 bp):
TAAATTAGATATTAATTATATATAA
Found at i:32985 original size:13 final size:14
Alignment explanation
Indices: 32964--33003 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
32954 AAATAGTTGT
32964 ATATTTATATTATA
1 ATATTTATATTATA
*
32978 AT-TTTATAATATA
1 ATATTTATATTATA
32991 ATATATTATATTA
1 ATAT-TTATATTA
33004 AGGTAAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
13 12 0.55
14 3 0.14
15 7 0.32
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
ATATTTATATTATA
Found at i:33369 original size:25 final size:23
Alignment explanation
Indices: 33360--33408 Score: 73
Period size: 22 Copynumber: 2.1 Consensus size: 23
33350 ATTATATATT
33360 ATTTATAATTATATAAA-TATAA
1 ATTTATAATTATATAAATTATAA
33382 ATTTATAATATATATAAATTATCAA
1 ATTTATAAT-TATATAAATTAT-AA
33407 AT
1 AT
33409 AATTATTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
22 9 0.38
23 8 0.33
24 3 0.12
25 4 0.17
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (23 bp):
ATTTATAATTATATAAATTATAA
Found at i:33398 original size:17 final size:17
Alignment explanation
Indices: 33346--33401 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
33336 ATAAAAATTA
* *
33346 ATAAATTATATATTATTT
1 ATAAATT-TATAATATAT
*
33364 AT-AA-TTAT-ATAAAT
1 ATAAATTTATAATATAT
33378 ATAAATTTATAATATAT
1 ATAAATTTATAATATAT
33395 ATAAATT
1 ATAAATT
33402 ATCAAATAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
14 5 0.16
15 5 0.16
16 5 0.16
17 14 0.45
18 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
ATAAATTTATAATATAT
Found at i:33409 original size:31 final size:32
Alignment explanation
Indices: 33346--33409 Score: 78
Period size: 31 Copynumber: 2.0 Consensus size: 32
33336 ATAAAAATTA
* * *
33346 ATAAATTATATATTATTTATAATTATATAAAT
1 ATAAATTATATAATATATATAATTATACAAAT
33378 ATAAATT-TATAATATATATAAATTAT-CAAAT
1 ATAAATTATATAATATATAT-AATTATACAAAT
33409 A
1 A
33410 ATTATTAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
31 15 0.54
32 13 0.46
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (32 bp):
ATAAATTATATAATATATATAATTATACAAAT
Found at i:33659 original size:15 final size:15
Alignment explanation
Indices: 33622--33672 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
33612 TTTATAATAA
*
33622 TTAAT-TAAAAATAT
1 TTAATATAAAATTAT
* * *
33636 ATAAAATAAATTTAT
1 TTAATATAAAATTAT
33651 TTAATATAAAATTAT
1 TTAATATAAAATTAT
*
33666 TTTATAT
1 TTAATAT
33673 TATAACATTA
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
14 3 0.11
15 25 0.89
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TTAATATAAAATTAT
Found at i:34455 original size:23 final size:24
Alignment explanation
Indices: 34425--34469 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
34415 TACATAATAA
*
34425 TTATATAATTAT-AAATATTATTG
1 TTATATAATAATAAAATATTATTG
34448 TTATATAATAATAAAATATTAT
1 TTATATAATAATAAAATATTAT
34470 GTATGATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (24 bp):
TTATATAATAATAAAATATTATTG
Found at i:34569 original size:14 final size:15
Alignment explanation
Indices: 34534--34592 Score: 52
Period size: 14 Copynumber: 4.1 Consensus size: 15
34524 ATTTATAAGA
34534 AATTAATATATATAAT
1 AATTAAT-TATATAAT
*
34550 AA-TAATTATA-ATT
1 AATTAATTATATAAT
*
34563 AATTAATTATATTAT
1 AATTAATTATATAAT
* *
34578 ACTT-ATTATTTAAT
1 AATTAATTATATAAT
34592 A
1 A
34593 TAACTAAAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
13 4 0.11
14 21 0.60
15 8 0.23
16 2 0.06
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (15 bp):
AATTAATTATATAAT
Found at i:34593 original size:19 final size:20
Alignment explanation
Indices: 34549--34643 Score: 51
Period size: 19 Copynumber: 5.0 Consensus size: 20
34539 ATATATATAA
34549 TAATAATTATAATTAATTAAT
1 TAAT-ATTATAATTAATTAAT
* *
34570 T-ATATTATACTT-ATTATT
1 TAATATTATAATTAATTAAT
*
34588 TAATATAACTAA--AATT-AT
1 TAATATTA-TAATTAATTAAT
* *
34606 TAATATAATAATAAATATAA-
1 TAATATTATAATTAAT-TAAT
* *
34626 TAATACTA-ATTTAATTAA
1 TAATATTATAATTAATTAA
34644 ACAATAGTCA
Statistics
Matches: 58, Mismatches: 9, Indels: 17
0.69 0.11 0.20
Matches are distributed among these distances:
17 3 0.05
18 18 0.31
19 24 0.41
20 11 0.19
21 2 0.03
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (20 bp):
TAATATTATAATTAATTAAT
Found at i:34877 original size:13 final size:15
Alignment explanation
Indices: 34859--34904 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
34849 CAAATTTAAA
34859 ATTAATA-AATTA-T
1 ATTAATATAATTATT
34872 ATTAATATTAATTATT
1 ATTAATA-TAATTATT
* *
34888 ATTAACATAATAATT
1 ATTAATATAATTATT
34903 AT
1 AT
34905 CATTATTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 7 0.25
15 14 0.50
16 7 0.25
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTAATATAATTATT
Found at i:34898 original size:21 final size:22
Alignment explanation
Indices: 34874--34926 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
34864 TAAATTATAT
34874 TAATATTAATTATTATT-AACA
1 TAATATTAATTATTATTAAACA
*
34895 TAATAATT-ATCATTATTAAACA
1 TAAT-ATTAATTATTATTAAACA
34917 -AAT-TTAATTA
1 TAATATTAATTA
34927 AAAATATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
19 2 0.07
20 3 0.11
21 15 0.56
22 7 0.26
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45
Consensus pattern (22 bp):
TAATATTAATTATTATTAAACA
Found at i:35241 original size:29 final size:30
Alignment explanation
Indices: 35184--35247 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 30
35174 TAAGTTTTAA
*
35184 ATTATTTTAATATAATTATTATATTATAGT
1 ATTATTTTAATATAATTATTATATAATAGT
*
35214 ATTATTTT-TTATAATATATTAT-TAATAGT
1 ATTATTTTAATATAAT-TATTATATAATAGT
35243 ATTAT
1 ATTAT
35248 AAATTGTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
29 17 0.55
30 14 0.45
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (30 bp):
ATTATTTTAATATAATTATTATATAATAGT
Found at i:35247 original size:12 final size:11
Alignment explanation
Indices: 35186--35274 Score: 51
Period size: 10 Copynumber: 8.1 Consensus size: 11
35176 AGTTTTAAAT
35186 TATT-TTAATA
1 TATTATTAATA
35196 TAATTATTATATTA
1 T-ATTATTA-A-TA
* *
35210 TAGTATT-ATT
1 TATTATTAATA
*
35220 TTTTA-TAATA
1 TATTATTAATA
35230 TATTATTAATA
1 TATTATTAATA
*
35241 GTATTATAAAT-
1 -TATTATTAATA
* *
35252 TGTTATTAACA
1 TATTATTAATA
*
35263 AATTATTAATA
1 TATTATTAATA
35274 T
1 T
35275 TATAATTATA
Statistics
Matches: 57, Mismatches: 14, Indels: 15
0.66 0.16 0.17
Matches are distributed among these distances:
9 1 0.02
10 18 0.32
11 17 0.30
12 12 0.21
13 6 0.11
14 3 0.05
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (11 bp):
TATTATTAATA
Found at i:35509 original size:12 final size:13
Alignment explanation
Indices: 35475--35516 Score: 59
Period size: 12 Copynumber: 3.2 Consensus size: 13
35465 TTAAATAACT
35475 ATTTAATTATATAA
1 ATTTAATTATAT-A
*
35489 ATATAATTAT-TA
1 ATTTAATTATATA
35501 ATTTAATTATATA
1 ATTTAATTATATA
35514 ATT
1 ATT
35517 AACACTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 10 0.40
13 6 0.24
14 9 0.36
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTTAATTATATA
Found at i:35881 original size:25 final size:26
Alignment explanation
Indices: 35842--35912 Score: 74
Period size: 25 Copynumber: 2.8 Consensus size: 26
35832 TTAATTAAAA
* *
35842 TATAAATATTTAATTAAATTA-TTAT
1 TATAAATAATAAATTAAATTATTTAT
* *
35867 TATAAATAATAAATTATACTATTTAT
1 TATAAATAATAAATTAAATTATTTAT
* *
35893 TTTAAGTAA-AAATTAAATTA
1 TATAAATAATAAATTAAATTA
35913 ATTAAGTTTA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
25 26 0.70
26 11 0.30
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (26 bp):
TATAAATAATAAATTAAATTATTTAT
Found at i:36441 original size:25 final size:24
Alignment explanation
Indices: 36413--36466 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
36403 TAATTATTTT
* *
36413 TAATTTATATATTATTATAATAAAA
1 TAATTAATATATTA-AATAATAAAA
*
36438 TAATTAATTTATTAAATAATAAAA
1 TAATTAATATATTAAATAATAAAA
36462 -AATTA
1 TAATTA
36467 TTAATAAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 5 0.19
24 9 0.35
25 12 0.46
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (24 bp):
TAATTAATATATTAAATAATAAAA
Found at i:37162 original size:19 final size:18
Alignment explanation
Indices: 37138--37198 Score: 52
Period size: 19 Copynumber: 3.3 Consensus size: 18
37128 ATAATATTAT
37138 ATATTATAATATATAAATA
1 ATATTATAATATATAAA-A
* * *
37157 ATATTATTATTTATTAAA
1 ATATTATAATATATAAAA
*
37175 ATAATTATAAT-TTTAAAA
1 AT-ATTATAATATATAAAA
*
37193 AAATTA
1 ATATTA
37199 AATTAATATT
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
17 4 0.12
18 9 0.26
19 21 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
ATATTATAATATATAAAA
Found at i:37171 original size:29 final size:25
Alignment explanation
Indices: 37115--37179 Score: 93
Period size: 25 Copynumber: 2.7 Consensus size: 25
37105 TACTACTATG
37115 ATTATAATATAAAATAATATTATAT
1 ATTATAATATAAAATAATATTATAT
37140 ATTATAATATATAAATAATATTAT-T
1 ATTATAATATA-AAATAATATTATAT
37165 ATT-T-AT-TAAAATAAT
1 ATTATAATATAAAATAAT
37180 TATAATTTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
21 7 0.18
22 2 0.05
23 2 0.05
24 1 0.03
25 15 0.38
26 12 0.31
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (25 bp):
ATTATAATATAAAATAATATTATAT
Found at i:37639 original size:14 final size:14
Alignment explanation
Indices: 37593--37641 Score: 53
Period size: 14 Copynumber: 3.3 Consensus size: 14
37583 ATTAAATAAT
*
37593 AATTTATTATTGTA
1 AATTTATTATTATA
*
37607 AATTAATTAATAATATA
1 AATTTATT-AT--TATA
37624 AATTTATTATTATA
1 AATTTATTATTATA
37638 AATT
1 AATT
37642 ATAATAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
14 15 0.52
15 2 0.07
16 2 0.07
17 10 0.34
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (14 bp):
AATTTATTATTATA
Found at i:37896 original size:17 final size:16
Alignment explanation
Indices: 37869--37903 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
37859 ATATTAGTCA
37869 TATAATTAATAATAAT
1 TATAATTAATAATAAT
*
37885 TATAACTTAATATTAAT
1 TATAA-TTAATAATAAT
37902 TA
1 TA
37904 AGCAATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (16 bp):
TATAATTAATAATAAT
Found at i:38099 original size:31 final size:31
Alignment explanation
Indices: 38056--38122 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
38046 ATAATAAATA
*
38056 ATTTATATTTAATCAAATATTAA-TATTAATT
1 ATTTATATTTAATAAAATA-TAACTATTAATT
*
38087 ATTTA-ATATTAATAAAATATAACTATT-ATA
1 ATTTATAT-TTAATAAAATATAACTATTAATT
38117 ATTTAT
1 ATTTAT
38123 CTTATTATCA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
30 12 0.39
31 19 0.61
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (31 bp):
ATTTATATTTAATAAAATATAACTATTAATT
Found at i:38185 original size:13 final size:13
Alignment explanation
Indices: 38148--38191 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
38138 GATTAATAAT
*
38148 ATAATTTCATATTCC
1 ATAATTT-ATATT-A
*
38163 ATAATATATATTA
1 ATAATTTATATTA
38176 ATAATTTATATTA
1 ATAATTTATATTA
38189 ATA
1 ATA
38192 TACAAATTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
13 15 0.58
14 5 0.19
15 6 0.23
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (13 bp):
ATAATTTATATTA
Found at i:38684 original size:35 final size:34
Alignment explanation
Indices: 38607--38685 Score: 88
Period size: 35 Copynumber: 2.3 Consensus size: 34
38597 AGTTTATATA
* * *
38607 TAAATATAATTTATAAATTAATACATAATTTAGT
1 TAAATATAACTTATAAATTAATACATAATTAAAT
*
38641 TAACATATAACTTATAATATTAATA-ATAGTTAAAT
1 TAA-ATATAACTTATAA-ATTAATACATAATTAAAT
38676 TATAATATAA
1 TA-AATATAA
38686 TATAAGCTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
34 3 0.08
35 27 0.71
36 8 0.21
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.42
Consensus pattern (34 bp):
TAAATATAACTTATAAATTAATACATAATTAAAT
Found at i:38785 original size:10 final size:10
Alignment explanation
Indices: 38754--38840 Score: 67
Period size: 10 Copynumber: 9.0 Consensus size: 10
38744 TAGAGTTATA
*
38754 ATTATTAATT
1 ATTAATAATT
*
38764 -TTAATTAGTT
1 ATTAA-TAATT
38774 ATTAATAATT
1 ATTAATAATT
38784 ATTAATAATT
1 ATTAATAATT
* *
38794 A-TAATTATA
1 ATTAATAATT
*
38803 ATTAATAAGT
1 ATTAATAATT
*
38813 ATAAATAATT
1 ATTAATAATT
38823 A-T-ATAATT
1 ATTAATAATT
38831 -TTAAATAATT
1 ATT-AATAATT
38841 TAATTACTAA
Statistics
Matches: 60, Mismatches: 11, Indels: 12
0.72 0.13 0.14
Matches are distributed among these distances:
8 7 0.12
9 10 0.17
10 39 0.65
11 4 0.07
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.49
Consensus pattern (10 bp):
ATTAATAATT
Found at i:38799 original size:6 final size:6
Alignment explanation
Indices: 38749--38825 Score: 54
Period size: 6 Copynumber: 12.8 Consensus size: 6
38739 ATTTTTAGAG
* * *
38749 TTATAA TTATTAA TTTTAA TTAGTTA TTAATAA TTAT-- TAATAA TTATAA
1 TTATAA TTA-TAA TTATAA TTA-TAA TT-ATAA TTATAA TTATAA TTATAA
*
38798 TTATAA TTAATAA GTATAA --ATAA TTATA
1 TTATAA TT-ATAA TTATAA TTATAA TTATA
38826 TAATTTTAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 16
0.71 0.09 0.20
Matches are distributed among these distances:
4 7 0.12
6 30 0.54
7 18 0.32
8 1 0.02
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (6 bp):
TTATAA
Found at i:38806 original size:19 final size:17
Alignment explanation
Indices: 38784--38852 Score: 70
Period size: 18 Copynumber: 3.9 Consensus size: 17
38774 ATTAATAATT
38784 ATTAATAATTATAATTATA
1 ATTAATAATTATAA--ATA
*
38803 ATTAATAAGTATAAATA
1 ATTAATAATTATAAATA
*
38820 ATTATATAATTTTAAATA
1 ATTA-ATAATTATAAATA
38838 ATT--TAATTACTAAAT
1 ATTAATAATTA-TAAAT
38853 TATTTATTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
15 5 0.11
16 5 0.11
17 7 0.16
18 14 0.32
19 13 0.30
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (17 bp):
ATTAATAATTATAAATA
Found at i:38819 original size:29 final size:30
Alignment explanation
Indices: 38759--38825 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 30
38749 TTATAATTAT
* * * *
38759 TAATTTTAATTAGTTATTAATAATTATTAA
1 TAATTATAATTAGTAATTAATAAGTATAAA
38789 TAATTATAATTA-TAATTAATAAGTATAAA
1 TAATTATAATTAGTAATTAATAAGTATAAA
38818 TAATTATA
1 TAATTATA
38826 TAATTTTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
29 22 0.67
30 11 0.33
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (30 bp):
TAATTATAATTAGTAATTAATAAGTATAAA
Found at i:38878 original size:16 final size:16
Alignment explanation
Indices: 38832--38878 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
38822 TATATAATTT
38832 TAAATAATTTAATT-AC
1 TAAATAATTT-ATTAAC
*
38848 TAAATTATTTATTAAC
1 TAAATAATTTATTAAC
*
38864 TAAATAATTTTTTAA
1 TAAATAATTTATTAA
38879 ATTATTAAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
15 3 0.11
16 24 0.89
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (16 bp):
TAAATAATTTATTAAC
Found at i:38984 original size:22 final size:22
Alignment explanation
Indices: 38951--38993 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
38941 CTTTTAGTTA
*
38951 TATTCAAATAATACTATAATAT
1 TATTCAAATAATACAATAATAT
38973 TATT-AAATTAATACAATAATA
1 TATTCAAA-TAATACAATAATA
38994 ATTGTTTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (22 bp):
TATTCAAATAATACAATAATAT
Found at i:39477 original size:14 final size:14
Alignment explanation
Indices: 39433--39480 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
39423 AATTAAAAAT
39433 TTTAAATTTTTAATA
1 TTTAAA-TTTTAATA
**
39448 TTTAAATTAAAATA
1 TTTAAATTTTAATA
*
39462 TTTAAATTTTATTA
1 TTTAAATTTTAATA
39476 TTTAA
1 TTTAA
39481 TTATCGATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 22 0.79
15 6 0.21
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
TTTAAATTTTAATA
Found at i:39493 original size:28 final size:29
Alignment explanation
Indices: 39423--39480 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
39413 GAATGTTAAT
39423 AATTAAAA-ATTTTAAATTTTTAATATTTA
1 AATTAAAATA-TTTAAATTTTTAATATTTA
*
39452 AATTAAAATATTTAAA-TTTTATTATTTA
1 AATTAAAATATTTAAATTTTTAATATTTA
39480 A
1 A
39481 TTATCGATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 12 0.44
29 14 0.52
30 1 0.04
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (29 bp):
AATTAAAATATTTAAATTTTTAATATTTA
Found at i:40102 original size:181 final size:179
Alignment explanation
Indices: 39692--41361 Score: 1365
Period size: 181 Copynumber: 9.3 Consensus size: 179
39682 ATAAATTAAT
* * * * *
39692 ATCATAATGATTTGAGATTA-ATATTTGTTCAAATAGTCATAACTATTAGAACTGCT-TTGAA-A
1 ATCATAATGATTTGA-AATAGATAATTGTTCAAATAGTCATAACTATTTGAAAT--TATTCAATA
* * * *
39754 AACAGCTTTAGTTTTTAAATCTCTTGCTTAATAATTTTTGAAATATTAATAAAGTAGTATTATTT
63 AACAGATTTATTTTTTAAATCTCTTACTT--TAATTTTTG-AATATTAATAAATTAGTATTATTT
* * * *
39819 TA-TTCAAATAAGTTTTTATTAACTGAAACAATTGTTTTATGACAAAA-AAAATG
125 TATTTCAAATAAGCTTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGG
* * * * * *
39872 -TCAAAATAATTTTAAATAGATAATAGTTTAAATAGTCATATCTATTTGAAATTATTCAATAAAC
1 ATCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAATTATTCAATAAAC
* *
39936 AGATTTATTTTTTTAAAATCTCTTGCTTTAATTTTTCGAATGTTAATAAATTAGTATTATTTTAT
66 AGATTTA-TTTTTT-AAATCTCTTACTTTAATTTTT-GAATATTAATAAATTAGTATTATTTTAT
* * * **
40001 TCCAAATAAGCTTGTATGAACTCAAATAATTGTTTTATGATGAAACAAAAGG
128 TTCAAATAAGCTTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGG
* * * ** * * *
40053 AT-AGAATGATTTGAAATAGATAACTATTCTGATAGTCTTAACTATTTG-AACTAGTTCGACT-A
1 ATCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAATTA-TTC-AATAA
* * * *
40115 ACATATTTATTTTTTAAATCTCTTA--TTAATTTTTGAAATATTATTAAATTAGTATCATTTTAA
64 ACAGATTTATTTTTTAAATCTCTTACTTTAATTTTTG-AATATTAATAAATTAGTATTATTTTAT
* ** * *
40178 TCCAAATAAGCTTGTATGAAAGGAAACAATTGTTGTATGACAAAA-TAAA-G
128 TTCAAATAAGCTTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGG
* * * * *
40228 ATCATTATGATTTGAGATAGATAATTGTTCAAATAGTCATAACTATTT-AAACTAGTTTAGTAAA
1 ATCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAATTA-TTCAATAAA
* * ** * **
40292 TAGATTTAGTTTTTAAATCTCTTA--TTAATTTTCAAAATATTAATAAATCAAAATTATTTTATT
65 CAGATTTATTTTTTAAATCTCTTACTTTAATTTT-TGAATATTAATAAATTAGTATTATTTTATT
** * * *
40355 TTGAATAA-TTCTGTATGAACAGAAACAATTGTTTTATGATAAAACAAAAGG
129 TCAAATAAGCT-TGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGG
** * * * * * * ***
40406 -TCATAACAATTTGAAATAGATAATTATTCTAATAGACATGACTATTTGAACTTGTTTGGTAAAC
1 ATCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAATTATTCAATAAAC
* *** *
40470 AGATTTATTTTTTAAATCTCCTACCTATTAATTTGCAAAATATTAATAAAGTAGTATTATTTTAT
66 AGATTTATTTTTTAAATCTCTTA-CT-TTAATTT-TTGAATATTAATAAATTAGTATTATTTTAT
** * *
40535 TTTGAATAAACTTGTATGAA-TAGAAACAATTGTTTTATGACAAAACAGAA-G
128 TTCAAATAAGCTTGTATGAACT-GAAACAATTGTTTTATGACAAAACAAAAGG
* * * * * ** * *
40586 ATCATAACT-ATTAGAAATAAAAAATTGTTCAAACAGTTATAACTATTTGAGTTTACTCGATAAA
1 ATCATAA-TGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAATTATTCAATAAA
* * * * *
40650 CAAATTTATTTTTTAAATCTTTTACTTATTAATTGTTGGACTATTATTAAATTAGTATTATTTTA
65 CAGATTTATTTTTTAAATCTCTTAC-T-TTAATT-TTTGAATATTAATAAATTAGTATTATTTTA
** * * * * * *
40715 TTTTGAATAAGCTTATAT-AGACAGAAACAACTAG-TTCATCACAAAACAAAATG
127 TTTCAAATAAGCTTGTATGA-ACTGAAACAA-TTGTTTTATGACAAAACAAAAGG
* * * *
40768 -TCATAACT-ATTTGAAATAGATAATTGTTCAAATAGTCAGATCTATTTG-AA-CATTCAAAAAA
1 ATCATAA-TGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAATTATTC-AATAA
* *
40829 ACAAATTTATTTTTTAAAT-TTTTACTTGTTAAATTTTTGAATATTAATAAATT--TAATTATTT
64 ACAGATTTATTTTTTAAATCTCTTAC-T-TT-AATTTTTGAATATTAATAAATTAGT-ATTATTT
* * *
40891 TA-TTCAAAATAAGCTTGTATGGA-TAGAAACAATTGGTTTATCACAAAACAAAAAGG
125 TATTTC-AAATAAGCTTGTATGAACT-GAAACAATTGTTTTATGACAAAAC-AAAAGG
* * * * *
40947 -TCATAACT-ATTTGAAATAAATAATTGTTTAAATAGTCAGAACTATTCGAACA-TATTCAAAAA
1 ATCATAA-TGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAA-ATTATTCAATAA
* * * *
41009 ACAAATTTATTTTTTAAAT-TTTTACTTATTAAATTTTGAAATATTAATTAATT--TAATTATTT
64 ACAGATTTATTTTTTAAATCTCTTAC-T-TTAATTTTTG-AATATTAATAAATTAGT-ATTATTT
* * *
41071 TATTTGAAATAAACTTGTATGAACAGAAACAATTGTTTTATGACAAAACAAAAGG
125 TATTTCAAATAAGCTTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGG
* * * *
41126 -TCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATCACTATTT-AAACTTGTTCAGTAAA
1 ATCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAA-TTATTCAATAAA
* * *
41189 CAGATTCATTTTTTTAAATATCTTACTCATTAATTTTTCGAATATTAATAAATTAGTAATATTTT
65 CAGATTTA-TTTTTTAAATCTCTTACT--TTAATTTTT-GAATATTAATAAATTAGTATTATTTT
* * * * * * * *
41254 ATTTCGAATAGGCCTATATGAATTGATACAATTGTTTTATGACAAAGCAATAGG
126 ATTTCAAATAAGCTTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGG
* *
41308 -TCATAATGATTTGAAATAGATAATTATTCAAATAGTTATGAA-TATTTG-AATTAT
1 ATCATAATGATTTGAAATAGATAATTGTTCAAATAGTCAT-AACTATTTGAAATTAT
41362 AAGATTTCAA
Statistics
Matches: 1224, Mismatches: 207, Indels: 117
0.79 0.13 0.08
Matches are distributed among these distances:
175 6 0.00
176 136 0.11
177 148 0.12
178 54 0.04
179 233 0.19
180 189 0.15
181 354 0.29
182 102 0.08
183 2 0.00
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.41
Consensus pattern (179 bp):
ATCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAATTATTCAATAAAC
AGATTTATTTTTTAAATCTCTTACTTTAATTTTTGAATATTAATAAATTAGTATTATTTTATTTC
AAATAAGCTTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGG
Found at i:40264 original size:357 final size:357
Alignment explanation
Indices: 39693--41361 Score: 1455
Period size: 360 Copynumber: 4.6 Consensus size: 357
39683 TAAATTAATA
* * * * * * *
39693 TCATAATGATTTGAGATTA-ATATTTGTTCAAATAGTCATAACTATTAGAACT-GCTTTGA-AAA
1 TCATAACGATTTGA-AATAGATAATTATTCAAATAGTCATAACTATTTGAACTAG-TTCGAGTAA
* * * * *
39755 ACAGCTTTAGTTTTTAAATCTCTTGCTTAATAATTTTTGAAATATTAATAAAGTAGTATTATTTT
64 ACAGATTTATTTTTTAAA--TC-TACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTT
* * * * *
39820 A-TTCAAATAAGTTTTTATTAACTGAAACAATTGTTTTATGACAAAAAAAATG-TCAAAATAATT
126 ATTTCAAATAAGCTTGTATGAA-AGAAACAATTGTTTTATGACAAAAAAAA-GATCATAAT-ATT
* * * * *
39883 TTAAATAGATAATAGTTTAAATAGTCATATCTATTTGAAATTATTCAATAAACAGATTTATTTTT
188 TGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAATTATTCAATAAACAAATTTA-TTTT
* * **
39948 TTAAAATCTCTTGC-T-TTAATTTTTCGAATGTTAATAAATTAGTATTATTTTATTCCAAATAAG
252 TT-AAATCTCTTACTTATTAATTTTTCGAATATTAATAAATTAGTATTATTTTATTTTAAATAAG
** * **
40011 CTTGTATGAACTCAAATAATTGTTTTATGATGAAACAAAAGG
316 CTTGTATGAACAGAAACAATTGTTTTATGACAAAACAAAAGG
* * * ** * *
40053 AT-AGAATGATTTGAAATAGATAACTATTCTGATAGTCTTAACTATTTGAACTAGTTCGACT-AA
1 -TCATAACGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTAGTTCGAGTAAA
* * * * *
40116 CATATTTATTTTTTAAATCT-CTTATTAATTTTTGAAATATTATTAAATTAGTATCATTTTAATC
65 CAGATTTATTTTTTAAATCTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTT
* * * *
40180 CAAATAAGCTTGTATGAAAGGAAACAATTGTTGTATGACAAAATAAAGATCATTATGATTTGAGA
130 CAAATAAGCTTGTATGAAA-GAAACAATTGTTTTATGACAAAAAAAAGATCATAAT-ATTTGAAA
* * * * * *
40245 TAGATAATTGTTCAAATAGTCATAACTATTT-AAACTAGTTTAGTAAATAGATTTAGTTTTTAAA
193 TAGATAATTGTTCAAATAGTCATAACTATTTGAAATTA-TTCAATAAACAAATTTATTTTTTAAA
* * ** * *
40309 --TC-T-CTTATTAA-TTTTCAAAATATTAATAAATCAAAATTATTTTATTTTGAATAA-TTCTG
257 TCTCTTACTTATTAATTTTTC-GAATATTAATAAATTAGTATTATTTTATTTTAAATAAGCT-TG
*
40368 TATGAACAGAAACAATTGTTTTATGATAAAACAAAAGG
320 TATGAACAGAAACAATTGTTTTATGACAAAACAAAAGG
* * * * * *
40406 TCATAACAATTTGAAATAGATAATTATTCTAATAGACATGACTATTTGAACTTGTTTG-GTAAAC
1 TCATAACGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTAGTTCGAGTAAAC
* *** *
40470 AGATTTATTTTTTAAATCTCCTACCTATTAATTTGCAAAATATTAATAAAGTAGTATTATTTTAT
66 AGATTTATTTTTTAAA--T-CTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTAT
** * * *
40535 TTTGAATAAACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAGAAGATCATAACTATTAG
128 TTCAAATAAGCTTGTATGAA-AGAAACAATTGTTTTATGACAAAA-AAAAGATCATAA-TATTTG
* * * * ** * *
40600 AAATAAAAAATTGTTCAAACAGTTATAACTATTTGAGTTTACTCGATAAACAAATTTATTTTTTA
190 AAATAGATAATTGTTCAAATAGTCATAACTATTTGAAATTATTCAATAAACAAATTTATTTTTTA
* * * * * * *
40665 AATCTTTTACTTATTAATTGTTGGACTATTATTAAATTAGTATTATTTTATTTTGAATAAGCTTA
255 AATCTCTTACTTATTAATTTTTCGAATATTAATAAATTAGTATTATTTTATTTTAAATAAGCTTG
* * * *
40730 TAT-AGACAGAAACAACTAG-TTCATCACAAAACAAAATG
320 TATGA-ACAGAAACAA-TTGTTTTATGACAAAACAAAAGG
* * * * * **
40768 TCATAACTATTTGAAATAGATAATTGTTCAAATAGTCAGATCTATTTGAAC-A-TTCAAAAAAAC
1 TCATAACGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTAGTTCGAGTAAAC
* * *
40831 AAATTTATTTTTTAAATTTTTACTTGTTAAATTTTTG-AATATTAATAAATT--TAATTATTTTA
66 AGATTTATTTTTTAAA--TCTACTTATT-AATTTTTGAAATATTAATAAATTAGT-ATTATTTTA
* * * *
40893 -TTCAAAATAAGCTTGTATGGATAGAAACAATTGGTTTATCACAAAACAAAAAGGTCATAACTAT
127 TTTC-AAATAAGCTTGTAT-GAAAGAAACAATTGTTTTATGAC-AAA-AAAAAGATCATAA-TAT
* * * * *
40957 TTGAAATAAATAATTGTTTAAATAGTCAGAACTATTCGAACA-TATTCAAAAAACAAATTTATTT
187 TTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAA-ATTATTCAATAAACAAATTTATTT
* * * *
41021 TTTAAAT-TTTTACTTATTAAATTTT-GAAATATTAATTAATT--TAATTATTTTATTTGAAATA
251 TTTAAATCTCTTACTTATTAATTTTTCG-AATATTAATAAATTAGT-ATTATTTTATTTTAAATA
*
41082 AACTTGTATGAACAGAAACAATTGTTTTATGACAAAACAAAAGG
314 AGCTTGTATGAACAGAAACAATTGTTTTATGACAAAACAAAAGG
* * * *
41126 TCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATCACTATTTAAACTTGTTC-AGTAAAC
1 TCATAACGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTAGTTCGAGTAAAC
* * *
41190 AGATTCATTTTTTTAAATATCTTACTCATTAATTTTTCG-AATATTAATAAATTAGTAATATTTT
66 AGATTTA-TTTTTT-AA-ATC-TACTTATTAATTTTT-GAAATATTAATAAATTAGTATTATTTT
* * * * * * * * *
41254 ATTTCGAATAGGCCTATATGAATTGATACAATTGTTTTATGACAAAGCAATAGGTCATAATGATT
126 ATTTCAAATAAGCTTGTATGAA-AGAAACAATTGTTTTATGACAAA-AAAAAGATCATAAT-ATT
* *
41319 TGAAATAGATAATTATTCAAATAGTTATGAA-TATTTG-AATTAT
188 TGAAATAGATAATTGTTCAAATAGTCAT-AACTATTTGAAATTAT
41362 AAGATTTCAA
Statistics
Matches: 1056, Mismatches: 197, Indels: 111
0.77 0.14 0.08
Matches are distributed among these distances:
351 1 0.00
352 10 0.01
353 135 0.13
355 4 0.00
356 50 0.05
357 170 0.16
358 163 0.15
359 85 0.08
360 178 0.17
361 101 0.10
362 149 0.14
363 10 0.01
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.41
Consensus pattern (357 bp):
TCATAACGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTAGTTCGAGTAAAC
AGATTTATTTTTTAAATCTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTC
AAATAAGCTTGTATGAAAGAAACAATTGTTTTATGACAAAAAAAAGATCATAATATTTGAAATAG
ATAATTGTTCAAATAGTCATAACTATTTGAAATTATTCAATAAACAAATTTATTTTTTAAATCTC
TTACTTATTAATTTTTCGAATATTAATAAATTAGTATTATTTTATTTTAAATAAGCTTGTATGAA
CAGAAACAATTGTTTTATGACAAAACAAAAGG
Found at i:42555 original size:181 final size:177
Alignment explanation
Indices: 41992--42748 Score: 608
Period size: 181 Copynumber: 4.2 Consensus size: 177
41982 ACCAGTTTGA
* *
41992 TAAACATATTTATTTTTTAAA-AT-TT--TTATTAATTTTTGAAATATTAATAGATTAGTATTAT
1 TAAACA-ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTAT
* * * * * * *
42053 TTTATTTCGAACA-AA-CTTATATAAACA-AAAACATTAGTTTTATGAAAAAATAAAAGGTCATA
65 TTTA-TTCTAA-ATAAGCTTGTATGAATAGAAAACATTA-TTTTATGACAAAACAAAAGGTTATA
* * *
42115 ACAATTTGAAATAGATAATTGTTCAAATAGTCATAATTATTTGAACGGATAGG
127 ACAATTTGAAATAGATAA-TGTT-AAATAGTCATAACTATTTGAATGGTTAGG
* * * *
42168 TAAACATAATTATTTTTTAATTCTCTTACTTATTAATTTTTGAAATTTTAATAAATTTA-TTTTA
1 TAAACA-ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAA-TTAGTATTA
* * * * * *
42232 TTTTATTCTAAATAAGCTAGTATGAATTGAAAATATTGTTTTA-GACAAAACAAAAAGTTATAAT
64 TTTTATTCTAAATAAGCTTGTATGAATAGAAAACATTATTTTATGACAAAACAAAAGGTTATAAC
* * * ** * * *
42296 GATTTGAAATAGATAATTATTCACATAGTTTTAACTAGTTGAACTAGTTCGG
129 AATTTGAAATAGATAA-TGTT-AAATAGTCATAACTATTTGAA-TGGTTAGG
* * * * *
42348 CAAACAATTTTATTTTTTAAATCTCTTAGTTATTAATTTTT-AGAATATTATTAGATTAGTTTTA
1 TAAACAA-TTTATTTTTTAAATCTCTTACTTATTAATTTTTGA-AATATTAATAAATTAGTATTA
42412 TTTTATT-TCAAATAAGCTTGTATGAATAGAAATA-ATTATTTTATGACAAAACAAAAGGTTATA
64 TTTTATTCT-AAATAAGCTTGTATGAATAGAAA-ACATTATTTTATGACAAAACAAAAGGTTATA
* * * * * **
42475 ACAATTTGAAGTATACAACTGCTTTAAGAGTCATAACTATTTGAATTGGTTTTG
127 ACAATTTGAAATAGATAA-TG-TTAAATAGTCATAACTATTTGAA-TGGTTAGG
* *
42529 TAAATAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAAGATTAATAAATTAGTATTAT
1 TAAACA-ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTAT
* * ** * * * * *
42594 TTTATTCTGAATAAGCTTGTATG-ATCA-AAAACAATTGTCATATCACCAAACAATAGGTAAGAA
65 TTTATTCTAAATAAGCTTGTATGAAT-AGAAAAC-ATTATTTTATGACAAAACAAAAGGTTATAA
* * * * * * *
42657 CAATTTGAAAAAGATAATTATTGAAATGGCCATAATTATTTGAACTGATTTGG
128 CAATTTGAAATAGATAA-TGTT-AAATAGTCATAACTATTTGAA-TGGTTAGG
* * *
42710 TAAACATATTCACTTTTTAAATCACTTACTT-TTGAATTT
1 TAAACA-ATTTATTTTTTAAATCTCTTACTTATT-AATTT
42749 GTTCGGTAAA
Statistics
Matches: 464, Mismatches: 93, Indels: 43
0.77 0.16 0.07
Matches are distributed among these distances:
176 19 0.04
177 1 0.00
178 3 0.01
179 66 0.14
180 143 0.31
181 227 0.49
182 5 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (177 bp):
TAAACAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATT
TTATTCTAAATAAGCTTGTATGAATAGAAAACATTATTTTATGACAAAACAAAAGGTTATAACAA
TTTGAAATAGATAATGTTAAATAGTCATAACTATTTGAATGGTTAGG
Found at i:42932 original size:227 final size:226
Alignment explanation
Indices: 42514--42975 Score: 509
Period size: 227 Copynumber: 2.0 Consensus size: 226
42504 GTCATAACTA
* ** * **
42514 TTTGAATTGGTTTTGTAAATAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAAGATTA
1 TTTGAATTTGTTCGGTAAATAGATTTATTTTTTAAATCTCTTACATATTAATTTTCCAAAGATTA
* * *
42579 ATAAATTAGTATTATTTTATTCTGAATAAGCTTGTATGATCAAAAACAATTGTCATATCACCAAA
66 ATAAATTAGTATTAATTTATTCTGAATAAGCTTGTATGAACAAAAACAATTGTCATATAACCAAA
* * * * ** ** * **
42644 CAATAGGTAAGAACAATTTGAAAAAGATAATTATTGAAATGGCCATAATTATTTGAACTGATTTG
131 CAAAAGATAAGAACAATATGAAAAAGATAATTATTCAAATAACCATAACCATTTAAACTGATTCA
* *
42709 GTAAACATATTCACTTTTTAAATCACTTACT
196 GTAAACAAATTCAATTTTTAAATCACTTACT
*
42740 TTTGAATTTGTTCGGTAAATAGATTTATTTTTTTAAATCTCTTTCATATTAATTTTCCAAATG-T
1 TTTGAATTTGTTCGGTAAATAGATTTA-TTTTTTAAATCTCTTACATATTAATTTTCCAAA-GAT
* ** ** *
42804 TAATAAATTAGTATTAATTTATTCTGAATAAGCTTGTCTGAACTGAAACAATTGTTTTATAACTA
64 TAATAAATTAGTATTAATTTATTCTGAATAAGCTTGTATGAACAAAAACAATTGTCATATAACCA
** * ***
42869 AACAAAAGATCAA-AATGATATGAAATAA-ATAATTATTCTAATAATTGTAACCATTTAAACTGA
129 AACAAAAGAT-AAGAACAATATGAAA-AAGATAATTATTCAAATAACCATAACCATTTAAACTGA
* * *
42932 TTCAGTAAATAAATTTAATTTTTAAATCTCTTACT
192 TTCAGTAAACAAATTCAATTTTTAAATCACTTACT
42967 TATT-AATTT
1 T-TTGAATTT
42976 TCAAAATATT
Statistics
Matches: 193, Mismatches: 38, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
226 24 0.12
227 162 0.84
228 7 0.04
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.42
Consensus pattern (226 bp):
TTTGAATTTGTTCGGTAAATAGATTTATTTTTTAAATCTCTTACATATTAATTTTCCAAAGATTA
ATAAATTAGTATTAATTTATTCTGAATAAGCTTGTATGAACAAAAACAATTGTCATATAACCAAA
CAAAAGATAAGAACAATATGAAAAAGATAATTATTCAAATAACCATAACCATTTAAACTGATTCA
GTAAACAAATTCAATTTTTAAATCACTTACT
Found at i:43225 original size:14 final size:16
Alignment explanation
Indices: 43208--43239 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
43198 TTATTGATTA
43208 AATATT-AATT-AATT
1 AATATTAAATTGAATT
43222 AATATTAAATTGAATT
1 AATATTAAATTGAATT
43238 AA
1 AA
43240 CAAAAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 4 0.25
16 6 0.38
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (16 bp):
AATATTAAATTGAATT
Found at i:44667 original size:26 final size:27
Alignment explanation
Indices: 44638--44704 Score: 70
Period size: 26 Copynumber: 2.6 Consensus size: 27
44628 TATTTATAGC
*
44638 AATAATTTATAATATTATAT-ATTTTT
1 AATAATTTATAATATTATATAATATTT
**
44664 AATAATAGATAATA-TATATAATATTT
1 AATAATTTATAATATTATATAATATTT
*
44690 AA-ATTTTA-AATATTA
1 AATAATTTATAATATTA
44705 AACAAATATA
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
24 4 0.12
25 10 0.30
26 19 0.58
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (27 bp):
AATAATTTATAATATTATATAATATTT
Found at i:44714 original size:33 final size:35
Alignment explanation
Indices: 44645--44717 Score: 85
Period size: 35 Copynumber: 2.1 Consensus size: 35
44635 AGCAATAATT
* * * *
44645 TATAATATTATATATTTTTAATAATAGATAATATA
1 TATAATATTATAAATTTTAAATAATAAACAATATA
*
44680 TATAATATT-TAAATTTTAAATATTAAACAAATATA
1 TATAATATTATAAATTTTAAATAATAAAC-AATATA
44715 TAT
1 TAT
44718 TGTTTTAATA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
34 14 0.44
35 18 0.56
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (35 bp):
TATAATATTATAAATTTTAAATAATAAACAATATA
Found at i:44944 original size:23 final size:23
Alignment explanation
Indices: 44881--44956 Score: 64
Period size: 24 Copynumber: 3.2 Consensus size: 23
44871 ATATACTACT
* * **
44881 AAATA-ATTAATAATACTTATTT
1 AAATATATTTATAATAGTTATAA
* *
44903 AAATATAAGTTATATTAGTTATAA
1 AAATAT-ATTTATAATAGTTATAA
44927 AAATATATTTATAATAGTTATTAA
1 AAATATATTTATAATAGTTA-TAA
44951 TAAATA
1 -AAATA
44957 ATTAATATAA
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
22 5 0.12
23 12 0.29
24 20 0.48
25 5 0.12
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.43
Consensus pattern (23 bp):
AAATATATTTATAATAGTTATAA
Found at i:45652 original size:18 final size:18
Alignment explanation
Indices: 45596--45652 Score: 57
Period size: 17 Copynumber: 3.2 Consensus size: 18
45586 AATTATTTTA
*
45596 TATAAATTATACTATAATT
1 TATAAATTAT-CTTTAATT
*
45615 TA-AAATTAT-TTATAA-A
1 TATAAATTATCTT-TAATT
45631 TATAAATTATCTTTAATT
1 TATAAATTATCTTTAATT
45649 TATA
1 TATA
45653 TTATTGTATA
Statistics
Matches: 31, Mismatches: 3, Indels: 9
0.72 0.07 0.21
Matches are distributed among these distances:
16 3 0.10
17 13 0.42
18 13 0.42
19 2 0.06
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (18 bp):
TATAAATTATCTTTAATT
Found at i:45783 original size:7 final size:7
Alignment explanation
Indices: 45736--45806 Score: 53
Period size: 7 Copynumber: 10.7 Consensus size: 7
45726 TTAAAGTTAT
45736 TAATT-A
1 TAATTAA
*
45742 TAATTAT
1 TAATTAA
*
45749 TTATTAA
1 TAATTAA
45756 T-A-TAA
1 TAATTAA
45761 T-ATTAA
1 TAATTAA
45767 TTAATTAA
1 -TAATTAA
45775 TAATTAA
1 TAATTAA
*
45782 TAAGTAA
1 TAATTAA
* *
45789 TAAGTCA
1 TAATTAA
45796 TAATTAA
1 TAATTAA
45803 -AATT
1 TAATT
45807 TTGTTATTAC
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
5 5 0.09
6 13 0.24
7 31 0.57
8 5 0.09
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (7 bp):
TAATTAA
Found at i:47322 original size:23 final size:26
Alignment explanation
Indices: 47282--47331 Score: 63
Period size: 24 Copynumber: 2.0 Consensus size: 26
47272 TATATAAAAT
47282 AAATTTAAATCTTATT-AATA-ATTA
1 AAATTTAAATCTTATTAAATATATTA
47306 AAATTTAATAT-TT-TTAAATATATTA
1 AAATTTAA-ATCTTATTAAATATATTA
47331 A
1 A
47332 TATATAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
23 2 0.09
24 14 0.61
25 7 0.30
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (26 bp):
AAATTTAAATCTTATTAAATATATTA
Found at i:48418 original size:128 final size:128
Alignment explanation
Indices: 48211--48452 Score: 317
Period size: 128 Copynumber: 1.9 Consensus size: 128
48201 TTATTAAATT
* *
48211 TTTGAAATATTAATAAATTAATATTATTTTATTTCGAACAAACTTATATGAACAAAAACATTTAT
1 TTTGAAATATTAATAAATTAATACTATTTTATTTCGAACAAACTTATATGAACAAAAACAATTAT
**
48276 TTTACGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCATATAGCCTTAACTA
66 TTTACGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTCATATAGCCTTAACTA
* * * * * *
48339 TTTGGAATATTAGTAAATTTATACTATTTTATTT-GAA-ATAAGCTTGTATGAACATAAATAATT
1 TTTGAAATATTAATAAATTAATACTATTTTATTTCGAACA-AA-CTTATATGAACAAAAACAATT
* * * * *
48402 GTTTTATGGCAAAACAAGAGGTCATAACAATTTGAAATAGATAATTGTTCA
64 ATTTTACGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTCA
48453 AATCTCCTAC
Statistics
Matches: 97, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
126 1 0.01
127 5 0.05
128 91 0.94
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.38
Consensus pattern (128 bp):
TTTGAAATATTAATAAATTAATACTATTTTATTTCGAACAAACTTATATGAACAAAAACAATTAT
TTTACGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTCATATAGCCTTAACTA
Done.