Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168498.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_95, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 90895
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
File 2 of 3
Found at i:48659 original size:13 final size:14
Alignment explanation
Indices: 48636--48673 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
48626 TAATAATAGT
48636 TAATAAATTAAA-TA
1 TAAT-AATTAAATTA
*
48650 TAATATTTAAATTA
1 TAATAATTAAATTA
48664 TAATAATTAA
1 TAATAATTAA
48674 TAAGTAAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 6 0.29
14 15 0.71
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
TAATAATTAAATTA
Found at i:48728 original size:34 final size:34
Alignment explanation
Indices: 48690--48776 Score: 90
Period size: 34 Copynumber: 2.6 Consensus size: 34
48680 AATGTTTATC
* *
48690 ATTATAATATATTTAATTTATTT-AATTATATA-AT
1 ATTATAATATA-TTAA-ATATTTAAATTAAATATAT
* *
48724 ATTATTATATATTAAATATTTAAATTAAATATTT
1 ATTATAATATATTAAATATTTAAATTAAATATAT
*
48758 ATTATAATATAAT-AATATT
1 ATTATAATATATTAAATATT
48777 ATATATTATA
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
32 5 0.11
33 18 0.40
34 22 0.49
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (34 bp):
ATTATAATATATTAAATATTTAAATTAAATATAT
Found at i:48732 original size:13 final size:13
Alignment explanation
Indices: 48714--48814 Score: 56
Period size: 13 Copynumber: 8.3 Consensus size: 13
48704 AATTTATTTA
48714 ATTATATAATATT
1 ATTATATAATATT
*
48727 ATTATAT-AT-TA
1 ATTATATAATATT
* *
48738 AATATTTAA-ATT
1 ATTATATAATATT
* *
48750 A-AATAT-TTATT
1 ATTATATAATATT
* *
48761 ATAATATAATAAT
1 ATTATATAATATT
*
48774 ATTATATATTA-T
1 ATTATATAATATT
48786 ATTAT-TAAT-TT
1 ATTATATAATATT
*
48797 AATTATATAATAAT
1 -ATTATATAATATT
48811 ATTA
1 ATTA
48815 ATTTTATTAA
Statistics
Matches: 66, Mismatches: 13, Indels: 18
0.68 0.13 0.19
Matches are distributed among these distances:
11 17 0.26
12 21 0.32
13 27 0.41
14 1 0.02
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (13 bp):
ATTATATAATATT
Found at i:48889 original size:13 final size:14
Alignment explanation
Indices: 48871--48919 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
48861 AATATTTAGA
48871 TAATTAA-TAATAT
1 TAATTAATTAATAT
48884 TAATTAATTAATAT
1 TAATTAATTAATAT
*
48898 TCTATTATATTAA-A-
1 T-AATTA-ATTAATAT
48912 TAATTAAT
1 TAATTAAT
48920 AAGAATTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
12 2 0.06
13 11 0.35
14 8 0.26
15 5 0.16
16 5 0.16
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (14 bp):
TAATTAATTAATAT
Found at i:49760 original size:14 final size:14
Alignment explanation
Indices: 49738--49777 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
49728 ATTTAATCTA
* *
49738 TTAACAATTATTTT
1 TTAATAATTATTTG
49752 TTAATAATTATTTG
1 TTAATAATTATTTG
49766 TTAATAAGTTAT
1 TTAATAA-TTAT
49778 AATAATCTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 19 0.83
15 4 0.17
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.55
Consensus pattern (14 bp):
TTAATAATTATTTG
Found at i:49848 original size:11 final size:11
Alignment explanation
Indices: 49832--49857 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
49822 TTAATAATAA
49832 ATTTAGTATAT
1 ATTTAGTATAT
49843 ATTTAGTATAT
1 ATTTAGTATAT
49854 ATTT
1 ATTT
49858 TATAATTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.58
Consensus pattern (11 bp):
ATTTAGTATAT
Found at i:50210 original size:17 final size:18
Alignment explanation
Indices: 50190--50231 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
50180 ATCTAATTGT
50190 TATTATAATAGT-ATAAA
1 TATTATAATAGTAATAAA
*
50207 TATTAT-ATAGTAATAAT
1 TATTATAATAGTAATAAA
50224 TA-TATAAT
1 TATTATAAT
50232 TCAATTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (18 bp):
TATTATAATAGTAATAAA
Found at i:51114 original size:17 final size:18
Alignment explanation
Indices: 51092--51134 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
51082 TAGTTATATA
*
51092 AATTATAATTATA-ACTT
1 AATTATAATTATATAATT
51109 AATTAT-ATTATATAATT
1 AATTATAATTATATAATT
*
51126 AATAATAAT
1 AATTATAAT
51135 AACTATATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 6 0.27
17 14 0.64
18 2 0.09
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (18 bp):
AATTATAATTATATAATT
Found at i:51225 original size:6 final size:6
Alignment explanation
Indices: 51217--51322 Score: 60
Period size: 6 Copynumber: 17.3 Consensus size: 6
51207 GATTTATTAC
* ** *
51217 TTATAC TTATTAA TTATAA TTATAA TTATAA TTATTAA TT-TAA AAATTA
1 TTATAA TTA-TAA TTATAA TTATAA TTATAA TTA-TAA TTATAA TTATAA
* *
51266 TTAGTTAA -TATTAA TTA-AA TTATAA TCA-AA TTATAATA TTATGA TTAT-A
1 TTA--TAA TTA-TAA TTATAA TTATAA TTATAA TTAT-A-A TTATAA TTATAA
51315 TTATAA TT
1 TTATAA TT
51323 CATTTTAATA
Statistics
Matches: 79, Mismatches: 10, Indels: 22
0.71 0.09 0.20
Matches are distributed among these distances:
5 17 0.22
6 40 0.51
7 15 0.19
8 7 0.09
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (6 bp):
TTATAA
Found at i:51228 original size:13 final size:13
Alignment explanation
Indices: 51210--51351 Score: 83
Period size: 13 Copynumber: 11.5 Consensus size: 13
51200 TTTGATTGAT
* *
51210 TTATTACTTATAC
1 TTATTAATTATAA
51223 TTATTAATTATAA
1 TTATTAATTATAA
51236 TTA-TAATTATAA
1 TTATTAATTATAA
51248 TTATTAATT-TAA
1 TTATTAATTATAA
**
51260 AAATT-ATTAGTTAA
1 TTATTAATTA--TAA
51274 -TATTAATTA-AA
1 TTATTAATTATAA
*
51285 TTA-TAATCA-AA
1 TTATTAATTATAA
*
51296 TTA-TAA-TATTA
1 TTATTAATTATAA
*
51307 TGATTATATTATAA
1 TTATTA-ATTATAA
51321 TTCATT--TTAATAA
1 TT-ATTAATT-ATAA
*
51334 -TATTATTTATAA
1 TTATTAATTATAA
51346 TTATTA
1 TTATTA
51352 TTAATATGCA
Statistics
Matches: 103, Mismatches: 11, Indels: 30
0.72 0.08 0.21
Matches are distributed among these distances:
10 1 0.01
11 24 0.23
12 29 0.28
13 34 0.33
14 12 0.12
15 3 0.03
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.51
Consensus pattern (13 bp):
TTATTAATTATAA
Found at i:51245 original size:19 final size:19
Alignment explanation
Indices: 51210--51322 Score: 71
Period size: 19 Copynumber: 6.1 Consensus size: 19
51200 TTTGATTGAT
* *
51210 TTATTACTTATACTTATTAA
1 TTATTAATTATAATTA-TAA
51230 TTA-TAATTATAATTATAA
1 TTATTAATTATAATTATAA
** *
51248 TTATTAATT-TAAAAATTA
1 TTATTAATTATAATTATAA
51266 TTAGTTAA-TATTAATTA-AA
1 TTA-TTAATTA-TAATTATAA
*
51285 TTA-TAATCA-AATTATAA
1 TTATTAATTATAATTATAA
51302 -TATTATGATTAT-ATTATAA
1 TTATTA--ATTATAATTATAA
51321 TT
1 TT
51323 CATTTTAATA
Statistics
Matches: 72, Mismatches: 10, Indels: 22
0.69 0.10 0.21
Matches are distributed among these distances:
16 7 0.10
17 7 0.10
18 17 0.24
19 33 0.46
20 8 0.11
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (19 bp):
TTATTAATTATAATTATAA
Found at i:51343 original size:25 final size:26
Alignment explanation
Indices: 51224--51357 Score: 82
Period size: 25 Copynumber: 5.0 Consensus size: 26
51214 TACTTATACT
*
51224 TATTA-ATTATAATTATAATT-ATAA
1 TATTATATTATAATTATTATTAATAA
* *
51248 TTATTA-ATTTAAAAATTATTAGTTAATAT
1 -TATTATA-TT-ATAATTATTA-TTAATAA
* *
51277 TAATTAAATTATAATCAAATTA-TAATATTA
1 T-ATTATATTATAAT--TATTATTAATA--A
51307 TGATTATATTATAATTCATT-TTAATAA
1 T-ATTATATTATAATT-ATTATTAATAA
51334 TATTAT-TTATAATTATTATTAATA
1 TATTATATTATAATTATTATTAATA
51358 TGCAATATTA
Statistics
Matches: 87, Mismatches: 9, Indels: 26
0.71 0.07 0.21
Matches are distributed among these distances:
24 3 0.03
25 20 0.23
26 7 0.08
27 10 0.11
28 12 0.14
29 17 0.20
30 18 0.21
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (26 bp):
TATTATATTATAATTATTATTAATAA
Found at i:51424 original size:17 final size:17
Alignment explanation
Indices: 51402--51449 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
51392 AAATTAATAA
51402 ATTATATAATAATTATT
1 ATTATATAATAATTATT
*
51419 ATTATATTAA-AATAATT
1 ATTATA-TAATAATTATT
* *
51436 AATATTTAATAATT
1 ATTATATAATAATT
51450 GTATATAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 3 0.12
17 19 0.76
18 3 0.12
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTATATAATAATTATT
Found at i:52225 original size:105 final size:107
Alignment explanation
Indices: 52109--52314 Score: 362
Period size: 107 Copynumber: 1.9 Consensus size: 107
52099 TAATCATTTC
52109 AATAATAATATCATTATTAATGATAAAAATGATTAGTAAATTCT-GAAGA-TTTATTAGTATATT
1 AATAATAATATCATTATTAATGATAAAAATGATTAGTAAATTCTGGAAGATTTTATTAGTATATT
*
52172 ATAATCATACTAAATTGATATTATCTATCATTTTATAATAAT
66 ATAATCATACTAAATTGATATTATCTATCAATTTATAATAAT
* * *
52214 AATAATAATATCATTATTAATGATAAAAATTATTATTAAATTTTGGAAGATTTTATTAGTATATT
1 AATAATAATATCATTATTAATGATAAAAATGATTAGTAAATTCTGGAAGATTTTATTAGTATATT
52279 ATAATCATACTAAATTGATATTATCTATCAATTTAT
66 ATAATCATACTAAATTGATATTATCTATCAATTTAT
52315 GAACAAAAAC
Statistics
Matches: 95, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
105 41 0.43
106 5 0.05
107 49 0.52
ACGTcount: A:0.44, C:0.05, G:0.06, T:0.44
Consensus pattern (107 bp):
AATAATAATATCATTATTAATGATAAAAATGATTAGTAAATTCTGGAAGATTTTATTAGTATATT
ATAATCATACTAAATTGATATTATCTATCAATTTATAATAAT
Found at i:52606 original size:27 final size:31
Alignment explanation
Indices: 52568--52633 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 31
52558 ATTTAACATA
*
52568 ATTAA-TATTTT-ATATTATAGT-AT-AAAT
1 ATTAATTATTTTAATATTATAATAATAAAAT
* *
52595 ATTAATTATTTAAATATTTTAATAATAAAAT
1 ATTAATTATTTTAATATTATAATAATAAAAT
52626 ATTAATTA
1 ATTAATTA
52634 AAATTATTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 5 0.16
28 5 0.16
29 8 0.25
30 2 0.06
31 12 0.38
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (31 bp):
ATTAATTATTTTAATATTATAATAATAAAAT
Found at i:52941 original size:21 final size:21
Alignment explanation
Indices: 52909--52954 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 21
52899 TGATCTATTG
*
52909 AATAATATATATTATTTATAATTA
1 AATAA-ATATAATA-TT-TAATTA
52933 AATAAATATAATATTTAATTA
1 AATAAATATAATATTTAATTA
52954 A
1 A
52955 CAATTAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 7 0.33
22 2 0.10
23 7 0.33
24 5 0.24
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
AATAAATATAATATTTAATTA
Found at i:53487 original size:40 final size:41
Alignment explanation
Indices: 53432--53530 Score: 107
Period size: 40 Copynumber: 2.4 Consensus size: 41
53422 ATAAATTAAT
53432 TATAATTATATTAATAAT-TCAAATAATATAATAATAA-AT-A
1 TATAATTA-ATTAATAATAT-AAATAATATAATAATAATATAA
* * **
53472 TATAATATAATTAATACTATAAATATTATTCTAATAATATAA
1 TATAAT-TAATTAATAATATAAATAATATAATAATAATATAA
53514 TATAATT-ATTAATAATA
1 TATAATTAATTAATAATA
53531 ATTATTTAAG
Statistics
Matches: 50, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
40 37 0.74
41 6 0.12
42 7 0.14
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (41 bp):
TATAATTAATTAATAATATAAATAATATAATAATAATATAA
Found at i:53650 original size:27 final size:24
Alignment explanation
Indices: 53619--53702 Score: 77
Period size: 24 Copynumber: 3.5 Consensus size: 24
53609 ATATATGTTA
53619 ATTATATATAATATTAATAAATATAAT
1 ATTATATATAATA-TAATAAAT-T-AT
53646 ATTAT-T-T-ATATAATAAATTAT
1 ATTATATATAATATAATAAATTAT
*
53667 ATTA-ATATAATGATATTAAATTAT
1 ATTATATATAAT-ATAATAAATTAT
*
53691 TTTAATATATAA
1 ATT-ATATATAA
53703 AAATATATAT
Statistics
Matches: 49, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
21 7 0.14
22 2 0.04
23 10 0.20
24 16 0.33
25 2 0.04
26 7 0.14
27 5 0.10
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (24 bp):
ATTATATATAATATAATAAATTAT
Found at i:53651 original size:18 final size:18
Alignment explanation
Indices: 53629--53677 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
53619 ATTATATATA
53629 ATATTAATA-AATATAA-T
1 ATATTAATATAATA-AATT
*
53646 ATTATTTATATAATAAATT
1 A-TATTAATATAATAAATT
53665 ATATTAATATAAT
1 ATATTAATATAAT
53678 GATATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 1 0.04
18 20 0.74
19 6 0.22
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
ATATTAATATAATAAATT
Found at i:53727 original size:21 final size:21
Alignment explanation
Indices: 53653--53729 Score: 56
Period size: 21 Copynumber: 3.6 Consensus size: 21
53643 AATATTATTT
53653 ATATAATAAATTATATTAATATAATG
1 ATATAATAAA-TATATT--T-TAA-G
*
53679 ATAT--TAAAT-TATTTTAAT
1 ATATAATAAATATATTTTAAG
53697 ATATAA-AAATATATATTTAAG
1 ATATAATAAATATAT-TTTAAG
53718 A-ATAATAAATAT
1 ATATAATAAATAT
53730 TTATAGTTGT
Statistics
Matches: 44, Mismatches: 2, Indels: 15
0.72 0.03 0.25
Matches are distributed among these distances:
18 4 0.09
19 7 0.16
20 8 0.18
21 12 0.27
22 4 0.09
23 1 0.02
24 4 0.09
26 4 0.09
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.43
Consensus pattern (21 bp):
ATATAATAAATATATTTTAAG
Found at i:53860 original size:21 final size:20
Alignment explanation
Indices: 53814--53852 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
53804 ATCTCAATTT
* *
53814 ATAATTATTATATAGTTACA
1 ATAATTATAATATAATTACA
53834 ACTAATTATAATATAATTA
1 A-TAATTATAATATAATTA
53853 TTAATAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 1 0.06
21 15 0.94
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.44
Consensus pattern (20 bp):
ATAATTATAATATAATTACA
Found at i:53884 original size:35 final size:34
Alignment explanation
Indices: 53836--53933 Score: 105
Period size: 35 Copynumber: 2.9 Consensus size: 34
53826 TAGTTACAAC
*
53836 TAATTATAATATAATTATTAATAATAACTATA-AA
1 TAATTATATTATAA-TATTAATAATAACTATATAA
53870 TTAATTATATTATAATAGTTAAT-A-AACTATATAA
1 -TAATTATATTATAATA-TTAATAATAACTATATAA
* *
53904 TAATT-TATTATTATATTAAAAATAATCTAT
1 TAATTATATTATAATATTAATAATAA-CTAT
53934 TTCAAATCAT
Statistics
Matches: 55, Mismatches: 3, Indels: 11
0.80 0.04 0.16
Matches are distributed among these distances:
31 4 0.07
32 10 0.18
33 14 0.25
34 9 0.16
35 18 0.33
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (34 bp):
TAATTATATTATAATATTAATAATAACTATATAA
Found at i:54956 original size:22 final size:21
Alignment explanation
Indices: 54927--54981 Score: 51
Period size: 23 Copynumber: 2.6 Consensus size: 21
54917 CTATATTTTT
54927 ATAA-TATTAATC-TTAAATAA
1 ATAATTATTAATCATT-AATAA
* *
54947 TATATTTATTTATTCATTAATAA
1 -ATAATTA-TTAATCATTAATAA
54970 ATAATTATTAAT
1 ATAATTATTAAT
54982 ATAATTAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
21 7 0.26
22 8 0.30
23 10 0.37
24 2 0.07
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (21 bp):
ATAATTATTAATCATTAATAA
Found at i:56549 original size:180 final size:179
Alignment explanation
Indices: 56137--56689 Score: 600
Period size: 180 Copynumber: 3.1 Consensus size: 179
56127 CTTTTAAATC
* * * *
56137 ACTTATTAATTTTTTAAATATTAATAGATTAGTATTACTTTATTCTGAATAAACTTA-TATGAAC
1 ACTTATTAATTTTTTGAATATTAATAGATTAGTATTATTTTATTTTGAATAAGC-TAGTATGAA-
* * *
56201 AAAAACATTTGTTTTATGACAAAACAAAAAG-CAATAATGATTTGAAATATATAATTGTTCAAAT
64 AAAAA-AATTGTTTTATGACAAAACAAAAGGTC-ATAATGATTTGAATTATATAATTGTTCAAAT
* * * * *
56265 AGT-GTAATTTTTTGAATTGGTTAGGTAAACAAAATTA-TTTTTAAATCTCTT
127 AGTCATAACTATTTGAATTGGTTCGGTAAACAAATTTATTTTTTAAATCTCTT
* * * * **
56316 ATTTATTAA-TTTTTGAAATATTAACAAATTCA-TTTTATTTTATTTCAAATAAGCTAGTATGAA
1 ACTTATTAATTTTTTG-AATATTAATAGATT-AGTATTATTTTATTTTGAATAAGCTAGTATGAA
* * * * * *
56379 TTGAGAAAATTGTTTTATGACAAGAC-AAAGGTCATAACGATTTGAATTAGATAATTGTTCATAT
64 --AAAAAAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAATTATATAATTGTTCAAAT
* * * *
56443 AGTCTTACCTATTTGAATTGGTTCGGCAAACAAATTTATTTTTTAAATCCCTT
127 AGTCATAACTATTTGAATTGGTTCGGTAAACAAATTTATTTTTTAAATCTCTT
* * * * *
56496 AGTTATTAATTTTTTGAATATTATTAGATTAGTATTGTTTTATTTTGAATAAGCTTGTTTGAACA
1 ACTTATTAATTTTTTGAATATTAATAGATTAGTATTATTTTATTTTGAATAAGCTAGTATGAA-A
* * * *
56561 AAAATAATTGTTTTATGACAAAACAAAAGATTATAATGATATGAATTATAGAATTGTTCAAATAG
65 AAAA-AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAATTATATAATTGTTCAAATAG
* * *
56626 TCATAACTATTTAAATTAGTTCGGTAAACAAATTCATTTTTTAAA-CTCTT
129 TCATAACTATTTGAATTGGTTCGGTAAACAAATTTATTTTTTAAATCTCTT
56676 ACTTATTAATTTTT
1 ACTTATTAATTTTT
56690 GAAATTGTTA
Statistics
Matches: 306, Mismatches: 57, Indels: 21
0.80 0.15 0.05
Matches are distributed among these distances:
178 41 0.13
179 91 0.30
180 96 0.31
181 78 0.25
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.43
Consensus pattern (179 bp):
ACTTATTAATTTTTTGAATATTAATAGATTAGTATTATTTTATTTTGAATAAGCTAGTATGAAAA
AAAAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAATTATATAATTGTTCAAATAGTC
ATAACTATTTGAATTGGTTCGGTAAACAAATTTATTTTTTAAATCTCTT
Found at i:57374 original size:181 final size:180
Alignment explanation
Indices: 57050--58048 Score: 706
Period size: 181 Copynumber: 5.6 Consensus size: 180
57040 ATGATTTATA
* * * * * *
57050 AATAAAATAAAATTAATCTAATAATATTTTGAAAATTAATAACTAAGAGATTTAAAAAATAAAAT
1 AATAAAATAAAATAAATTTATTAATATTTTAAAAATTAATAAGTAAGAGAATTAAAAAAT-AAAT
* * * * ** * * * *
57115 -TGTTTGCTGAACTAGTTCAAATAGTTAAAACTATATGAATAATTATCTATTTCAAATCATTATA
65 CTGTTTACT-AACCAATTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATTATTATG
* * * **
57179 ACATTTTGTTTTGTCATAAAACAATATTTTCAATTCATACCTGCTTATTTAG
129 ACCTTTTCTTTTGTCATAAAACAATATTTTCTATTCATACAAGCTTATTTAG
* * *
57231 AATAAAATAAAATAAATTTATTAAAATTTCAAAAATTAATAAGTAAGAGAATTAAAAAATAATTC
1 AATAAAATAAAATAAATTTATTAATATTTTAAAAATTAATAAGTAAGAGAATTAAAAAATAAATC
* *
57296 TGTTTACCTAACCAATTCAAATAATTTTGACTATTTGAACAATTATCTATTTCAAATTTTTATGA
66 TGTTTA-CTAACCAATTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATTATTATGA
* * * * * * *
57361 CCTTTTCTTTTGTCATAAAACTAATGTTTT-TGTTCATATAAGTTTGTTCAA
130 CCTTTTCTTTTGTCATAAAAC-AATATTTTCTATTCATACAAGCTTATTTAG
* * * * **
57412 AATAAAATAATACT-AATCTATTAACATTTCAAAAATTAATAA--AA-A-TTTTAAAAAATAAAT
1 AATAAAATAA-AATAAATTTATTAATATTTTAAAAATTAATAAGTAAGAGAATTAAAAAATAAAT
* * * * * *
57472 ATGTTTATCAAACTAGTTC--A-AATTAAGACTATTT-AAGCAATTATTTATTTCAAATTATTAT
65 CTGTTTA-CTAACCAATTCAAATAATTATGACTATTTGAA-CAATTATCTATTTCAAATTATTAT
* * * * * * * * * *
57533 GACTTTTTATTCTATTATAAGATAATAGTTTCTATTTATTCAAGCTTATTTAG
128 GACCTTTTCTTTTGTCATAAAACAATATTTTCTATTCATACAAGCTTATTTAG
* * * * * *
57586 ATTAAAGTAATATAAATTTATTAATATTTTGACAATTAATAAGTAA-AAAATGTAAAAAATTAAA
1 AATAAAATAAAATAAATTTATTAATATTTTAAAAATTAATAAGTAAGAGAAT-TAAAAAA-TAAA
* * * * * * * * **
57650 TATGTTTACTGAACTAGA-TCAAACAGTCATGACTCTTTGAATAGTTATCTATTTCAAATCGTTA
64 TCTGTTTACT-AACCA-ATTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATTATTA
* * * * *
57714 TGACCTTTTCTTTTGTCATAAAAAAAT-TATTTCAATTCATATAAGCTTATTCAA
127 TGACCTTTTCTTTTGTCATAAAACAATAT-TTTCTATTCATACAAGCTTATTTAG
* * * * * * *
57768 AATAAAATAATATTAAGTTATTAATATTTTGAAAATTAATAATTAAGA-ATTTAAAAAATGAATC
1 AATAAAATAAAATAAATTTATTAATATTTTAAAAATTAATAAGTAAGAGAATTAAAAAATAAATC
* * * * * * * ** ** *
57832 TATTTTATTAAACAAGTTTAAATAATTATAATTATTTGAACAATTATTTATTGGAAATTGCTATA
66 T-GTTTACTAACCAA-TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATTATTATG
** * * * *
57897 ACCTTTTGC-TTTGTCATAAAATGATTTTTTCTGTTCATACAAACTTATTTTG
129 ACCTTTT-CTTTTGTCATAAAACAATATTTTCTATTCATACAAGCTTATTTAG
* * * *
57949 AATAAAATAATACAAATTTATTAA-A--TTAAGACAATTAATAAGTAAAAG-ATTTAAAAATAAA
1 AATAAAATAAAATAAATTTATTAATATTTTAA-A-AATTAATAAGTAAGAGAATTAAAAAATAAA
* * ** *
58010 TCTATTTACTAAACAAGTTCAAATTGTTATGACTTTTTG
64 TCTGTTTACTAACCAA-TTCAAATAATTATGACTATTTG
58049 TTTTGTCATA
Statistics
Matches: 635, Mismatches: 155, Indels: 58
0.75 0.18 0.07
Matches are distributed among these distances:
173 9 0.01
174 94 0.15
175 1 0.00
176 3 0.00
177 27 0.04
178 12 0.02
179 51 0.08
180 38 0.06
181 275 0.43
182 122 0.19
183 3 0.00
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (180 bp):
AATAAAATAAAATAAATTTATTAATATTTTAAAAATTAATAAGTAAGAGAATTAAAAAATAAATC
TGTTTACTAACCAATTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATTATTATGAC
CTTTTCTTTTGTCATAAAACAATATTTTCTATTCATACAAGCTTATTTAG
Found at i:58035 original size:144 final size:146
Alignment explanation
Indices: 57886--58156 Score: 377
Period size: 144 Copynumber: 1.9 Consensus size: 146
57876 TATTTATTGG
* *
57886 AAATTGCTATAACCTTTTGCTTTGTCATAAAATGATT-TTTTCTGTTCATACAAACTTATTTTGA
1 AAATTGCTATAACCTTTTGCTTTGTCATAAAATAATTGTTTT-TGTTCATACAAACTTATTTGGA
57950 ATAAAATAATACAAATTTATTAA-ATTAAGACAATTAATAAGTAAAAGATTT-AAAAATAAATCT
65 ATAAAATAATACAAATTTATTAATATTAAGACAATTAATAAGTAAAAGATTTAAAAAATAAATCT
58013 ATTTACTAAACAAGTTC
130 ATTTACTAAACAAGTTC
* * * * * *
58030 AAATTGTTATGACTTTTTGTTTTGTCATAAAATAATTGTTTTTGTTCATACCAGCTTATTTGGAA
1 AAATTGCTATAACCTTTTGCTTTGTCATAAAATAATTGTTTTTGTTCATACAAACTTATTTGGAA
** ** * * *
58095 TAAAATAATATTAATTTATTAATATTTCGATAATTTATAAGTAAAATATTTAAAAAATAAAT
66 TAAAATAATACAAATTTATTAATATTAAGACAATTAATAAGTAAAAGATTTAAAAAATAAAT
58157 ATGTTTGCCG
Statistics
Matches: 109, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
144 72 0.66
145 27 0.25
146 10 0.09
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (146 bp):
AAATTGCTATAACCTTTTGCTTTGTCATAAAATAATTGTTTTTGTTCATACAAACTTATTTGGAA
TAAAATAATACAAATTTATTAATATTAAGACAATTAATAAGTAAAAGATTTAAAAAATAAATCTA
TTTACTAAACAAGTTC
Found at i:58695 original size:18 final size:19
Alignment explanation
Indices: 58670--58713 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
58660 CAATATTCAT
58670 TAATTAATGATTAATTAAA
1 TAATTAATGATTAATTAAA
* *
58689 T-ATTAATTATTCATTAAA
1 TAATTAATGATTAATTAAA
58707 TAATTAA
1 TAATTAA
58714 AATATACAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (19 bp):
TAATTAATGATTAATTAAA
Found at i:58777 original size:12 final size:12
Alignment explanation
Indices: 58762--58787 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
58752 TTCATATTAA
58762 TAATTTATATAT
1 TAATTTATATAT
58774 TAATTTATATAT
1 TAATTTATATAT
58786 TA
1 TA
58788 TATTATATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
TAATTTATATAT
Found at i:59154 original size:40 final size:38
Alignment explanation
Indices: 59083--59161 Score: 90
Period size: 40 Copynumber: 2.0 Consensus size: 38
59073 ATCCAATTTA
* *
59083 ATATTAAATTATTAATTTATGATAATTAGTATGATATATT
1 ATATTAAATCATTAATTTATAATAATTAGTAT-AT-TATT
59123 ATATT-AATCATTAATATTATAAT-ATTAAGTATATTATT
1 ATATTAAATCATTAAT-TTATAATAATT-AGTATATTATT
59161 A
1 A
59162 ATAATCTAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
38 5 0.14
39 14 0.40
40 16 0.46
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.49
Consensus pattern (38 bp):
ATATTAAATCATTAATTTATAATAATTAGTATATTATT
Found at i:59448 original size:14 final size:14
Alignment explanation
Indices: 59414--59455 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
59404 TTATTAAGAA
*
59414 TTTATTGTAATAA-
1 TTTATTATAATAAT
* *
59427 TATATTATTATAAT
1 TTTATTATAATAAT
59441 TTTATTATAATAAT
1 TTTATTATAATAAT
59455 T
1 T
59456 AATTTTTCAT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
13 10 0.43
14 13 0.57
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (14 bp):
TTTATTATAATAAT
Found at i:59475 original size:17 final size:18
Alignment explanation
Indices: 59435--59475 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
59425 AATATATTAT
*
59435 TATAATTTTATTATAATA
1 TATAATTTTATCATAATA
59453 -ATTAATTTT-TCATAATA
1 TA-TAATTTTATCATAATA
59470 TATAAT
1 TATAAT
59476 CTTAATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 5
0.77 0.04 0.19
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (18 bp):
TATAATTTTATCATAATA
Found at i:59627 original size:42 final size:43
Alignment explanation
Indices: 59531--59640 Score: 118
Period size: 42 Copynumber: 2.6 Consensus size: 43
59521 TAATAATAGC
* * * *
59531 TTAATAATAATCAATATTAATTATAAATATATTATATTTGACTA
1 TTAA-AATAATAAATATTATTTATAAATATAATATATTTCACTA
59575 TTAAAATAATAAATATTATTTA-AAATATAATATATTTCAC-A
1 TTAAAATAATAAATATTATTTATAAATATAATATATTTCACTA
* *
59616 -TACAAATTAATAATTATAATTTATA
1 TTA-AAA-TAATAAATATTATTTATA
59641 TCTATTGAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
40 2 0.04
41 4 0.07
42 30 0.53
43 17 0.30
44 4 0.07
ACGTcount: A:0.51, C:0.05, G:0.01, T:0.44
Consensus pattern (43 bp):
TTAAAATAATAAATATTATTTATAAATATAATATATTTCACTA
Found at i:60079 original size:18 final size:18
Alignment explanation
Indices: 60053--60101 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
60043 CAAATATCAT
*
60053 AATAATATAT-ATTATTAG
1 AATATTATATAATTATT-G
*
60071 AATATTATATAATTATTT
1 AATATTATATAATTATTG
60089 AATATTAT-TAATT
1 AATATTATATAATT
60102 TGAAGTATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 5 0.18
18 17 0.61
19 6 0.21
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (18 bp):
AATATTATATAATTATTG
Found at i:60921 original size:20 final size:22
Alignment explanation
Indices: 60886--60925 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
60876 TAAATTATTA
60886 TATATAATTTATATTTAATAAT
1 TATATAATTTATATTTAATAAT
60908 TATATAA-TTA-ATTTAATA
1 TATATAATTTATATTTAATA
60926 TAAATTAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.44
21 3 0.17
22 7 0.39
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
TATATAATTTATATTTAATAAT
Found at i:61058 original size:13 final size:13
Alignment explanation
Indices: 61040--61066 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
61030 AGTATATAAC
61040 TCTATTTAAATTT
1 TCTATTTAAATTT
61053 TCTATTTAAATTT
1 TCTATTTAAATTT
61066 T
1 T
61067 AATATTATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (13 bp):
TCTATTTAAATTT
Found at i:61750 original size:10 final size:10
Alignment explanation
Indices: 61735--61773 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
61725 ATTAACACTA
61735 AATAATTAAT
1 AATAATTAAT
61745 AATAATTAAT
1 AATAATTAAT
*
61755 AATATTTTAATT
1 AATA-ATTAA-T
61767 AATAATT
1 AATAATT
61774 TATTTTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 14 0.56
11 6 0.24
12 5 0.20
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
AATAATTAAT
Found at i:61767 original size:15 final size:15
Alignment explanation
Indices: 61747--61792 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
61737 TAATTAATAA
61747 TAATTAATAATATTT
1 TAATTAATAATATTT
61762 TAATTAATAATTTATTT
1 TAATTAATAA--TATTT
*
61779 TCAAATAATAATAT
1 T-AATTAATAATAT
61793 CAATTATATT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
15 10 0.37
16 3 0.11
17 6 0.22
18 8 0.30
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTAATAATATTT
Found at i:61772 original size:18 final size:19
Alignment explanation
Indices: 61745--61791 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
61735 AATAATTAAT
61745 AATAATTAATAATATTTT-A
1 AATAA-TAATAATATTTTCA
* *
61764 ATTAATAAT-TTATTTTCA
1 AATAATAATAATATTTTCA
61782 AATAATAATA
1 AATAATAATA
61792 TCAATTATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 6 0.26
18 13 0.57
19 4 0.17
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (19 bp):
AATAATAATAATATTTTCA
Found at i:62545 original size:27 final size:28
Alignment explanation
Indices: 62493--62546 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
62483 AATTGTTACA
* * *
62493 AATTGGTATTAAATTATAATATTTAATT
1 AATTGGTATTAAATAATAACAATTAATT
62521 AATTGGT-TTAAATAATAACAATTAAT
1 AATTGGTATTAAATAATAACAATTAAT
62547 AAGTTTTGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.44
Consensus pattern (28 bp):
AATTGGTATTAAATAATAACAATTAATT
Found at i:63480 original size:10 final size:10
Alignment explanation
Indices: 63465--63499 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
63455 TATAAATTAT
63465 TTATTAATAA
1 TTATTAATAA
63475 TTATTAAT-A
1 TTATTAATAA
63484 TT-TTAATAA
1 TTATTAATAA
63493 TTATTAA
1 TTATTAA
63500 AAAGTCGTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 5 0.22
9 6 0.26
10 12 0.52
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (10 bp):
TTATTAATAA
Found at i:63591 original size:20 final size:20
Alignment explanation
Indices: 63566--63603 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
63556 GTTTGATGAA
* *
63566 CATATTTATTTTTTAAATCT
1 CATATTAATTTTTGAAATCT
63586 CATATTAATTTTTGAAAT
1 CATATTAATTTTTGAAAT
63604 ATCAATAGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.08, G:0.03, T:0.55
Consensus pattern (20 bp):
CATATTAATTTTTGAAATCT
Found at i:63803 original size:30 final size:30
Alignment explanation
Indices: 63764--63831 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
63754 AAATTAATCT
*
63764 ATTAA-TATAATATAACTA-ATAATAATTC
1 ATTAATTATAATATAACTACATAATAATTA
* *
63792 ATATAATTATAATATAATTACTTAATAATTA
1 AT-TAATTATAATATAACTACATAATAATTA
63823 ATTAATTAT
1 ATTAATTAT
63832 TATAACATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
28 2 0.06
29 3 0.09
30 19 0.56
31 10 0.29
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.44
Consensus pattern (30 bp):
ATTAATTATAATATAACTACATAATAATTA
Found at i:64050 original size:23 final size:20
Alignment explanation
Indices: 63994--64055 Score: 74
Period size: 20 Copynumber: 3.0 Consensus size: 20
63984 AATAAATTAC
63994 TATT-AATAAAT-AATAATT
1 TATTAAATAAATAAATAATT
*
64012 TATTAAATTAATAAATAATT
1 TATTAAATAAATAAATAATT
64032 TATTAATATAAATTAAAATAATT
1 TATTAA-ATAAA-T-AAATAATT
64055 T
1 T
64056 TAATTTTAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
18 4 0.11
19 6 0.16
20 13 0.35
21 4 0.11
22 1 0.03
23 9 0.24
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
TATTAAATAAATAAATAATT
Found at i:64100 original size:17 final size:17
Alignment explanation
Indices: 64042--64107 Score: 52
Period size: 17 Copynumber: 4.1 Consensus size: 17
64032 TATTAATATA
*
64042 AATTAA-AATAAT-TTT
1 AATTAATAATATTATTT
*
64057 AATT-TTAATATTA--T
1 AATTAATAATATTATTT
* *
64071 AATTTAATTATATTGTTT
1 AA-TTAATAATATTATTT
64089 AATTAATAATATTATTT
1 AATTAATAATATTATTT
64106 AA
1 AA
64108 ATTAGTTATT
Statistics
Matches: 38, Mismatches: 7, Indels: 10
0.69 0.13 0.18
Matches are distributed among these distances:
14 3 0.08
15 11 0.29
16 6 0.16
17 15 0.39
18 3 0.08
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (17 bp):
AATTAATAATATTATTT
Found at i:64108 original size:60 final size:59
Alignment explanation
Indices: 64035--64147 Score: 129
Period size: 60 Copynumber: 1.9 Consensus size: 59
64025 AATAATTTAT
* ** *
64035 TAATATAAATTAAAATAATT-TTAATTTTAATATTATAATTTAATTATATTGTTTAATTAA
1 TAATATAAATTAAAATAATTATT-ATTTAAATAAAATAATTTAAATA-ATTGTTTAATTAA
* * * *
64095 TAATATTATTTAAATTAGTTATTATTTAAATAAAATAATTTAAATAATTGTTT
1 TAATATAAATTAAAATAATTATTATTTAAATAAAATAATTTAAATAATTGTTT
64148 TATGACAAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
59 7 0.16
60 35 0.80
61 2 0.05
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (59 bp):
TAATATAAATTAAAATAATTATTATTTAAATAAAATAATTTAAATAATTGTTTAATTAA
Found at i:64123 original size:33 final size:30
Alignment explanation
Indices: 64061--64139 Score: 74
Period size: 30 Copynumber: 2.6 Consensus size: 30
64051 AATTTTAATT
* *
64061 TTAATATTATAATTT-AATTATATTGTTTAA
1 TTAATAATAT-ATTTAAATTATATTATTTAA
64091 TTAATAATATTATTTAAATTAGTTATTATTTAA
1 TTAATAATA-TATTTAAATTA--TATTATTTAA
*
64124 ATAA-AATA-ATTTAAAT
1 TTAATAATATATTTAAAT
64140 AATTGTTTTA
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
30 20 0.48
31 6 0.14
32 4 0.10
33 12 0.29
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.52
Consensus pattern (30 bp):
TTAATAATATATTTAAATTATATTATTTAA
Found at i:64527 original size:179 final size:181
Alignment explanation
Indices: 64140--64862 Score: 525
Period size: 179 Copynumber: 4.0 Consensus size: 181
64130 TAATTTAAAT
* * * * * ** *
64140 AATTGTTTTATGACAAAACAAAAGTTCATAATGATTTGAAATAGATAATTGTTTAAATGGCCATA
1 AATTGTTTTATGATAAAACAAAAGGTCATAATGATTTAAAATAGATAATTGTTCAAATAGTAAAA
*
64205 ATTATTTGAATTGATTCGATAAACTGATTTATGTTTTAAATCTCTAAATTATCAATTTTTATAAT
66 AATATTTGAATTGATTCGATAAACTGATTTATGTTTTAAATCTCTAAATTATCAATTTTTATAAT
* *
64270 ATTAATAAAGTAATATTATTTTATTTCAGATAAGCTTTTATGAACTGAAAC
131 ATTAATAAAGTAATATTATTTTATTTCAGATAAGCATGTATGAACTGAAAC
* * *
64321 AATTGTTTTATGATAAAATATAAGGTCATAATGATTTTAAATAGATAATTGTTCAAATAGTAAAA
1 AATTGTTTTATGATAAAACAAAAGGTCATAATGATTTAAAATAGATAATTGTTCAAATAGTAAAA
* * * *
64386 AATATTTGAATTTG-TTCGGTAAA-TAGATTT-T-TTTCT-AATTTCTTACTTAAT-AATTTTT-
66 AATATTTGAA-TTGATTCGATAAACT-GATTTATGTTT-TAAATCTCTAAATT-ATCAATTTTTA
* * * ** *
64444 TCAATGTTAATAAATTAGTATTATTTTATTTC-GAATAAGCATGTATGAGTTGAAGC
127 T-AATATTAATAAAGTAATATTATTTTATTTCAG-ATAAGCATGTATGAACTGAAAC
* * * ***
64500 AATTATTTTATGATTAAACAAAAGGTCAAAATGATTTAAAATAGATAATTGTTC-AATAGTCTTA
1 AATTGTTTTATGATAAAACAAAAGGTCATAATGATTTAAAATAGATAATTGTTCAAATAGTAAAA
* * * ** * * * * * *
64564 AGTATTTGAATTGATTCAACAAACACATTTATTTTTTAAATC-CTTACTTATTAATGTTTAGAAT
66 AATATTTGAATTGATTCGATAAACTGATTTATGTTTTAAATCTCTAAATTATCAATTTTTATAAT
* ** * * * * * * *
64628 ATTATTAATTTAACAATATTTTACTATGA-ATAAGCTTGT-TGAACAGAAATT
131 ATTAATAAAGTAATATTATTTTA-TTTCAGATAAGCATGTATGAACTGAAA-C
* * * * ** ** * *
64679 AAATGTTTTAAGACAAAACAAAA-ATCATAACAATTGGAAATAGATAATTGTTCAAATAGT-CAT
1 AATTGTTTTATGATAAAACAAAAGGTCATAATGATTTAAAATAGATAATTGTTCAAATAGTAAAA
* * * * ** * *
64742 AACATTTGAACTGGTTCGGTAAAGAGATTTA-GTTTTAAATCTC----TTATTAATTTTTAAAAT
66 AATATTTGAATTGATTCGATAAACTGATTTATGTTTTAAATCTCTAAATTATCAATTTTTATAAT
* * * * **
64802 AGTAATAAAATAGTATTATTTTATTT-TGAATAATTATGTATGAA-TAGAAAC
131 ATTAATAAAGTAATATTATTTTATTTCAG-ATAAGCATGTATGAACT-GAAAC
64853 AATTGGTTTT
1 AATT-GTTTT
64863 GGAACATTAA
Statistics
Matches: 423, Mismatches: 96, Indels: 52
0.74 0.17 0.09
Matches are distributed among these distances:
173 2 0.00
174 41 0.10
175 13 0.03
177 12 0.03
178 83 0.20
179 179 0.42
180 13 0.03
181 77 0.18
182 3 0.01
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.42
Consensus pattern (181 bp):
AATTGTTTTATGATAAAACAAAAGGTCATAATGATTTAAAATAGATAATTGTTCAAATAGTAAAA
AATATTTGAATTGATTCGATAAACTGATTTATGTTTTAAATCTCTAAATTATCAATTTTTATAAT
ATTAATAAAGTAATATTATTTTATTTCAGATAAGCATGTATGAACTGAAAC
Found at i:65456 original size:15 final size:15
Alignment explanation
Indices: 65438--65471 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
65428 TTTATATTTA
65438 ATTAATAAT-TAAATT
1 ATTAATAATAT-AATT
65453 ATTAATAATATAATT
1 ATTAATAATATAATT
65468 ATTA
1 ATTA
65472 TTTAAATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 17 0.94
16 1 0.06
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTAATAATATAATT
Found at i:65465 original size:38 final size:41
Alignment explanation
Indices: 65399--65476 Score: 101
Period size: 38 Copynumber: 2.0 Consensus size: 41
65389 GGTATTAAAC
* *
65399 TAATAATATAAATCTAGTTATTATTATAATT-TATATTTAAT
1 TAATAATATAAATCTAGTTAATAATATAATTAT-TATTTAAT
65440 TAATAAT-TAAAT-TA-TTAATAATATAATTATTATTTAA
1 TAATAATATAAATCTAGTTAATAATATAATTATTATTTAA
65477 ATTTAAGAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
38 19 0.56
39 3 0.09
40 5 0.15
41 7 0.21
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (41 bp):
TAATAATATAAATCTAGTTAATAATATAATTATTATTTAAT
Found at i:67223 original size:543 final size:538
Alignment explanation
Indices: 65974--67359 Score: 1492
Period size: 543 Copynumber: 2.6 Consensus size: 538
65964 TCAATTATAT
* * * * * *
65974 AAATATTAATAAAGTAATATTATTTTATTTTGGATAAGCTTTTATGAAATGAAACAATTGTTTTA
1 AAATAGTAATAAATTAGTATTATTTTATTTTGAATAAGCTTATATGAATTGAAACAATTGTTTTA
* * * *
66039 CGATAAAACAAAAGGTCATAATGATTTTAAA-ATGATAATTGTTTAAATAGTCATAATTATTTAA
66 CG-TAAAACAAAAGGTCATAACGATTTGAAATA-GATAATTATTTAAATAGTCATAATTATTTGA
* * * * *
66103 ACTTGTTTGGTAAACAGATTTATTTTTTAATTC-CTTGCTTATTAATTTTCTG-AATGTTAATAA
129 ACTTGTTTGGTAAACAAATTTATTTTTTAAATCTTTTACTTATTAATTTT-TGAAATATTAATAA
* * * * * *
66166 AATAGTATTATTTTATTTCGAATAAGCATGTATGAACT-G-AACAATTATTTTATGGCCAAACAA
193 ATTAGTATTATTTTATTTCGAATAAGCTTATATGAA-TAGAAACAATTGTTTTATGACAAAACAA
* *
66229 AAGGTCATAATGATTTGAAATAGATAATTATT-ATAATAGTCTTCACTA-TTTGAACTAATTCAA
257 AAGGTCATAATGATTTGAAATAGATAATTATTCA-AATAGTCATAACTATTTTGAACTAATTCAA
* * * * * * *
66292 CAAATACATTTATTTTTTAAATCTCTTACTTATTAATTTTTAGAATATTATTAGTTTAGCAATAT
321 AAAACAAATTTATTTTATAAATCTCTTACTTATTAATCTTTAGAATATTATAAATTTAGCAATAT
* * * * * * *
66357 TTTACTCCGAATAAGTTTGTATGGATAGAAACAATTGTTTTATGACAAAACAAAAATCATATCGA
386 TTTACTCCGAATAAGCTTGTATGAACAAAAACAATTGTTTAATGACAAAACAAAAATCATAACAA
* *
66422 TTTAAGATGGATAATTATTCAAATAGTCATAACTATTTGAATTGGTCCGATAAACAGATATAGTT
451 TTTAAGATAGATAATTATTCAAATAGTCATAACCATTTGAATTGGTCCGATAAACAGATATAGTT
66487 TTTAAATCTCTTATTAATTTTCA
516 TTTAAATCTCTTATTAATTTTCA
* ** * * *
66510 AAATATTAATAAATTAGTATTATTTTATTTTGAATAATTTTGTATGAATAGAAACAACTGTTTTA
1 AAATAGTAATAAATTAGTATTATTTTATTTTGAATAAGCTTATATGAATTGAAACAATTGTTTTA
* *
66575 -TTACAAA-ATAAAGGATCATAACGATTTGAAATAAATAATTATTTAAATAGTCATAATTATTTG
66 CGTA-AAACA-AAAGG-TCATAACGATTTGAAATAGATAATTATTTAAATAGTCATAATTATTTG
*** * * * *
66638 AACTCACTCGATAAACAAATTTATTTTTTAAATATTTTACTTATTAATTTTTGAAATTTTAATAA
128 AACTTGTTTGGTAAACAAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAA
* * *
66703 ATTAGTATTATTTTATTTCAAATAAGCTTTTATGAATAGAAACAATTGGTTTATGACAAAACAAA
193 ATTAGTATTATTTTATTTCGAATAAGCTTATATGAATAGAAACAATTGTTTTATGACAAAACAAA
* * * *
66768 AGGTCATAATGATTTGAAATAGATAATTGTTCAAATGGTCATAATTATTTTGAACGT-GTTCAAA
258 AGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTTGAAC-TAATTCAAA
* * * * *
66832 AAACAAATTTATTTTATATAT-TTTTACTTATTAATCTTTGGAATATTAGTAAATTTA-TATTAT
322 AAACAAATTTATTTTATAAATCTCTTACTTATTAATCTTTAGAATATTA-TAAATTTAGCAATAT
** ** *
66895 TTTA-TTTGAAATAAGCTTGTATGAACAAAAACAATTGTTTAATGGTAAAACAAAAGGTCATAAC
386 TTTACTCCG-AATAAGCTTGTATGAACAAAAACAATTGTTTAATGACAAAACAAAA-ATCATAAC
* * ** * *
66959 AATTTGAA-ATAGATAATTGTTCAAATAGTCCTAACCATTTGAACTT-GTTTGGTAAATAGAT-T
449 AATTT-AAGATAGATAATTATTCAAATAGTCATAACCATTTGAA-TTGGTCCGATAAACAGATAT
* **
67021 CATTTTTTAAATCTCTTACTCATTAATTTTTG
512 -AGTTTTTAAATCTC-T--T-ATTAATTTTCA
* * * * * *
67053 GAATAGTAATAAGTTAGTATTATTTTATTTCGAATAAGCCTATATGAATTGATATAATTGTTTTA
1 AAATAGTAATAAATTAGTATTATTTTATTTTGAATAAGCTTATATGAATTGAAACAATTGTTTTA
* * * * * * *
67118 CGGTGAAACAAAAGGTTATAACGATTTGAAATAGATAATTATTCATATAGTTATTACTATTTGAA
66 C-GTAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTTAAATAGTCATAATTATTTGAA
* * * *
67183 CTTGTTTGGTAAACATATTTATTTTTTAAGTCTTTTACTTATTAATTGTTGAAATATTAATCAAT
130 CTTGTTTGGTAAACAAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAAT
* * * * * * * * *
67248 TAATATTATTTTA-ATCTGAATAAACTAATATGAACAAAAATAATTGTTTTATGATAAAACGAAA
195 TAGTATTATTTTATTTC-GAATAAGCTTATATGAATAGAAACAATTGTTTTATGACAAAACAAAA
* *
67312 GGTCATAATGATTTGAAATAAATAATTATTCCAATAGTCATAACTATT
259 GGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATT
67360 CAAAATTATT
Statistics
Matches: 701, Mismatches: 124, Indels: 43
0.81 0.14 0.05
Matches are distributed among these distances:
534 3 0.00
535 8 0.01
536 126 0.18
537 60 0.09
538 133 0.19
539 101 0.14
540 6 0.01
542 3 0.00
543 251 0.36
544 8 0.01
545 2 0.00
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.42
Consensus pattern (538 bp):
AAATAGTAATAAATTAGTATTATTTTATTTTGAATAAGCTTATATGAATTGAAACAATTGTTTTA
CGTAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTTAAATAGTCATAATTATTTGAAC
TTGTTTGGTAAACAAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATT
AGTATTATTTTATTTCGAATAAGCTTATATGAATAGAAACAATTGTTTTATGACAAAACAAAAGG
TCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTTGAACTAATTCAAAAAAC
AAATTTATTTTATAAATCTCTTACTTATTAATCTTTAGAATATTATAAATTTAGCAATATTTTAC
TCCGAATAAGCTTGTATGAACAAAAACAATTGTTTAATGACAAAACAAAAATCATAACAATTTAA
GATAGATAATTATTCAAATAGTCATAACCATTTGAATTGGTCCGATAAACAGATATAGTTTTTAA
ATCTCTTATTAATTTTCA
Found at i:67383 original size:181 final size:179
Alignment explanation
Indices: 65974--67359 Score: 1278
Period size: 181 Copynumber: 7.7 Consensus size: 179
65964 TCAATTATAT
* * * *
65974 AAATATTAATAAAGTAATATTATTTTATTTTGGATAAGCTTTTATGAA-ATGAAACAATTGTTTT
1 AAATATTAATAAATTAGTATTATTTTA-TTTGAATAAGCTTGTATGAATA-GAAACAATTGTTTT
* * * * * * *
66038 ACGATAAAACAAAAGGTCATAATGATTTTAAA-ATGATAATTGTTTAAATAGTCATAATTATTTA
64 ATGACAAAACAAAAGGTCATAATGATTTGAAATA-GATAATTATTCAAATAGTCATAACTATTTG
* * * *
66102 AACTTGTTTGGTAAACAGATTTATTTTTTAATTC-CTTGCTTATTAATTTTCTG
128 AACTTGTTCGATAAACAGATTTATTTTTTAAATCTCTTACTTATTAA-TTT-TG
* * * *
66155 -AATGTTAATAAAATAGTATTATTTTATTTCGAATAAGCATGTATGAACT-G-AACAATTATTTT
1 AAATATTAATAAATTAGTATTATTTTATTT-GAATAAGCTTGTATGAA-TAGAAACAATTGTTTT
* * * *
66217 ATGGCCAAACAAAAGGTCATAATGATTTGAAATAGATAATTATT-ATAATAGTCTTCACTATTTG
64 ATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCA-AATAGTCATAACTATTTG
** * * * * *
66281 AACTAATTCAACAAATACATTTATTTTTTAAATCTCTTACTTATTAATTTTT
128 AACTTGTTCGATAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTG
* ** * * ** * *
66333 AGAATATTATTAGTTTAGCAATATTTTACTCCGAATAAGTTTGTATGGATAGAAACAATTGTTTT
1 A-AATATTAATAAATTAGTATTATTTTA-TTTGAATAAGCTTGTATGAATAGAAACAATTGTTTT
* *
66398 ATGACAAAACAAAA-ATCAT-ATCGATTT-AAGATGGATAATTATTCAAATAGTCATAACTATTT
64 ATGACAAAACAAAAGGTCATAAT-GATTTGAA-ATAGATAATTATTCAAATAGTCATAACTATTT
* * * *
66460 GAA-TTGGTCCGATAAACAGATATAGTTTTTAAA--TC-T-CTTATTAATTTTCA
127 GAACTT-GTTCGATAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTT-G
** *
66510 AAATATTAATAAATTAGTATTATTTTATTTTGAATAATTTTGTATGAATAGAAACAACTGTTTTA
1 AAATATTAATAAATTAGTATTATTTTA-TTTGAATAAGCTTGTATGAATAGAAACAATTGTTTTA
* * * * * *
66575 TTACAAAA-TAAAGGATCATAACGATTTGAAATAAATAATTATTTAAATAGTCATAATTATTTGA
65 TGACAAAACAAAAGG-TCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGA
*** * * *
66639 ACTCACTCGATAAACAAATTTATTTTTTAAATATTTTACTTATTAATTTTTG
129 ACTTGTTCGATAAACAGATTTATTTTTTAAATCTCTTACTTATTAA-TTTTG
* * * *
66691 AAATTTTAATAAATTAGTATTATTTTATTTCAAATAAGCTTTTATGAATAGAAACAATTGGTTTA
1 AAATATTAATAAATTAGTATTATTTTATTT-GAATAAGCTTGTATGAATAGAAACAATTGTTTTA
* * *
66756 TGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATGGTCATAATTATTTTGA
65 TGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTA-TTTGA
* * * * * * *
66821 ACGTGTTCAAAAAACAAATTTATTTTATATAT-TTTTACTTATTAATCTTTG
129 ACTTGTTCGATAAACAGATTTATTTTTTAAATCTCTTACTTATTAAT-TTTG
* * * * *
66872 GAATATTAGTAAATTTA-TATTATTTTATTTGAAATAAGCTTGTATGAACAAAAACAATTGTTTA
1 AAATATTAATAAA-TTAGTATTATTTTATTTG-AATAAGCTTGTATGAATAGAAACAATTGTTTT
** ** * * *
66936 ATGGTAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCCTAACCATTTGA
64 ATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGA
* * * * *
67001 ACTTGTTTGGTAAATAGATTCATTTTTTAAATCTCTTACTCATTAATTTTTG
129 ACTTGTTCGATAAACAGATTTATTTTTTAAATCTCTTACTTATTAA-TTTTG
* * * * * * * *
67053 GAATAGTAATAAGTTAGTATTATTTTATTTCGAATAAGCCTATATGAATTGATATAATTGTTTTA
1 AAATATTAATAAATTAGTATTATTTTATTT-GAATAAGCTTGTATGAATAGAAACAATTGTTTTA
* *** * * * * *
67118 CGGTGAAACAAAAGGTTATAACGATTTGAAATAGATAATTATTCATATAGTTATTACTATTTGAA
65 TGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAA
* * * * *
67183 CTTGTTTGGTAAACATATTTATTTTTTAAGTCTTTTACTTATTAATTGTTG
130 CTTGTTCGATAAACAGATTTATTTTTTAAATCTCTTACTTATTAATT-TTG
* * * * ** * * *
67234 AAATATTAATCAATTAATATTATTTTAATCTGAATAAACTAATATGAACAAAAATAATTGTTTTA
1 AAATATTAATAAATTAGTATTATTTT-ATTTGAATAAGCTTGTATGAATAGAAACAATTGTTTTA
* * * *
67299 TGATAAAACGAAAGGTCATAATGATTTGAAATAAATAATTATTCCAATAGTCATAACTATT
65 TGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATT
67360 CAAAATTATT
Statistics
Matches: 980, Mismatches: 187, Indels: 76
0.79 0.15 0.06
Matches are distributed among these distances:
175 3 0.00
176 72 0.07
177 63 0.06
178 8 0.01
179 99 0.10
180 179 0.18
181 510 0.52
182 46 0.05
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.42
Consensus pattern (179 bp):
AAATATTAATAAATTAGTATTATTTTATTTGAATAAGCTTGTATGAATAGAAACAATTGTTTTAT
GACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAAC
TTGTTCGATAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTG
Found at i:67794 original size:181 final size:180
Alignment explanation
Indices: 67459--67991 Score: 633
Period size: 181 Copynumber: 2.9 Consensus size: 180
67449 CTTGTTCAGT
* *
67459 AAACAGATTCATTTTTTAAATCTCTCACTTATTAATTTTTGGAATATTAATAAATTAGAATTATG
1 AAACAGATTCATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGAATTAT-
* * * *
67524 TTA-TTCTAAATAAGCTTGTATGAACAAAAACAATTGTTTTGTGAGAAAACAAAAGGTCATAACG
65 TTATTTC-AAATAAGATTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACG
* * *
67588 ATTTGAAATAGATAGTTGTTCAAATAGTCATAATTGTTTGCACTGGTCAAGCC
129 ATTTGAAATAGATAATTGTTCAAATAGTCATAATTATTTGAACTGGT-AAGCC
* * * * *
67641 AAA-AGATACATTTTCTAAATCTGTTACTTATTAATTTTTAAAATATTAATAAATTAGCATTACT
1 AAACAGATTCATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGAATTA-T
* * * * ** *
67705 TTATTTCGAATAAGATTATATGAACAGAAACAATTGTTTTATGATAAAATAAATTGTCATAATGA
65 TTATTTCAAATAAGATTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGA
* * * * * * * * *
67770 TTTAAAATAAATATTTGGTCAAATAGTTATAACTAATTGAACTGGTATGGC
130 TTTGAAATAGATAATTGTTCAAATAGTCATAATTATTTGAACTGGTAAGCC
* *
67821 AAACAGATTTATTTTTTAAATCTCTTACGTATTAATTTTTGAAATATTAATAAATTA-ATATTAT
1 AAACAGATTCATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGA-ATTA-
* * * *
67885 TTTATTCCAAACAA-ACTTATATGAACAAAAACATTTGTTTTATGACAAAACAAAAGGTAATAAC
64 TTTATTTCAAATAAGA-TTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAAC
* *
67949 AATTTGAAATAGATAATTATTCAAATAGTCATAATTATTTGAA
128 GATTTGAAATAGATAATTGTTCAAATAGTCATAATTATTTGAA
67992 ATAGTTTTGT
Statistics
Matches: 290, Mismatches: 56, Indels: 11
0.81 0.16 0.03
Matches are distributed among these distances:
180 7 0.02
181 276 0.95
182 7 0.02
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.38
Consensus pattern (180 bp):
AAACAGATTCATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGAATTATT
TATTTCAAATAAGATTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGAT
TTGAAATAGATAATTGTTCAAATAGTCATAATTATTTGAACTGGTAAGCC
Found at i:67976 original size:16 final size:17
Alignment explanation
Indices: 67955--67987 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
67945 TAACAATTTG
67955 AAATAG-ATAATTATTC
1 AAATAGCATAATTATTC
67971 AAATAGTCATAATTATT
1 AAATAG-CATAATTATT
67988 TGAAATAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATAGCATAATTATTC
Found at i:67995 original size:19 final size:18
Alignment explanation
Indices: 67950--67996 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 18
67940 GGTAATAACA
67950 ATTTGAAATAG-ATAATT
1 ATTTGAAATAGTATAATT
*
67967 A-TTCAAATAGTCATAATT
1 ATTTGAAATAGT-ATAATT
67985 ATTTGAAATAGT
1 ATTTGAAATAGT
67997 TTTGTAAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
16 8 0.32
17 1 0.04
18 7 0.28
19 9 0.36
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.40
Consensus pattern (18 bp):
ATTTGAAATAGTATAATT
Found at i:68728 original size:181 final size:181
Alignment explanation
Indices: 68211--70703 Score: 1870
Period size: 181 Copynumber: 13.9 Consensus size: 181
68201 AAGTTAACAT
* * ** * * *
68211 AAGCTTATTTGAAATAAAATAGCT-CTAATTTATTAATATACCAAAAATTAATGAGTAAGAGAAT
1 AAGCTTATTCGAAATAAAATA-ATACTAATTTATTAATATTTCTAAAATTAATAAGTAAAAG-AT
* * * * *
68275 TAAAAAAATGAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATCTAAATAATTATCTATT
64 TTAAAAAATAAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATT
* * * * *
68340 TCAAAACATTATGACCA-TTTGTTTTGTCATAAAATAATTAGTTCTGTTCATGC
129 TCAAATCATTATGA-CATTTTGTTTTGTCATAAAACAATTATTTCTATTCATAC
* ** * * *
68393 AAGCTTATTTC-AAATACAATAATA-TAAATTTATTAA-AACTCCAAAATTAATAAATAAAA-AC
1 AAGCTTA-TTCGAAATAAAATAATACT-AATTTATTAATATTTCTAAAATTAATAAGTAAAAGAT
* * *** * * *
68454 TTAAAAAATAAATATATTTTTTGACCACA-TTC-AATAGTTATGACTATTTAAATAATTATCTAT
64 TTAAAAAATAAATCTGTTTACCGAACA-AGTTCAAATAGTTATGACTATTTGAACAATTATCTAT
* * *
68517 TTCAAATCATTAAGACAATTTGTTTTGTCATAAACCAATTATTTCTATTCATAC
128 TTCAAATCATTATGACATTTTGTTTTGTCATAAAACAATTATTTCTATTCATAC
*
68571 AAGCTTATTCGAAATAAAATAATATTAATTTATTAATATTTCTAAAATTAATAAGTAAAAGATTT
1 AAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCTAAAATTAATAAGTAAAAGATTT
* * * * * *
68636 AAATAATAAATTTGTTTACCAAACAAGTTCAAATAGTTATTACTATTTAAACAATTATATATTTC
66 AAAAAATAAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTC
* * * *
68701 AAATCTTTATGATATTTTGTTTTGTCATAAAACAATTGTTTCTATTCACAC
131 AAATCATTATGACATTTTGTTTTGTCATAAAACAATTATTTCTATTCATAC
* * * * * * *
68752 AAGTTTATTTGGAATAAAATAACACTAATTTATTATTA-TTCTAAAAATTAATAAGTTAGAGATT
1 AAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCT-AAAATTAATAAGTAAAAGATT
* * * * * * *
68816 TAAAAAATAAATCTGTTTACCGAACAAGTTTAAATAGTCATGTCCATTTAAACTATTATTTATTT
65 TAAAAAATAAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTT
* * * * * * *
68881 TAAATCGTTATGACATTTTGTTTTATTATAAAATAATTGTTTCTATTCATAT
130 CAAATCATTATGACATTTTGTTTTGTCATAAAACAATTATTTCTATTCATAC
** * *
68933 AAAATTATTC-AGAATAAAATAATACTAATTTATTACTATTTCAAAAATTAATAAG-----GATT
1 AAGCTTATTCGA-AATAAAATAATACTAATTTATTAATATTTCTAAAATTAATAAGTAAAAGATT
* ** ** * *
68992 T-AAAAATAAATGTGTTTTTCGAAGC-AGTTCAAATAGTTAAAACTATTAGAACAATTATTTA-T
65 TAAAAAATAAATCTGTTTACCGAA-CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATT
* * * * * * * *
69054 TCTAAATTATTCTGATC-TATTGTTTAGCCAAAAAATAATTGTTTC-AGTTCATAC
129 TC-AAATCATTATGA-CATTTTGTTTTGTCATAAAACAATTATTTCTA-TTCATAC
* * * * * ** *
69108 ATGCTTATTCAAAATATAGTAATACTAATTTATTAAAATTTAGAAAATTAATAA--AGAA-ATTT
1 AAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCTAAAATTAATAAGTAAAAGATTT
* * **
69170 -TAAAA-AAATCTATTTACCGAATGAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTT-
66 AAAAAATAAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTC
* * * ** * * * * *
69232 AAAACTGTTATGACCTTTCATTTTATCATAAAACAATTGTTTCAATACATAA
131 AAATC-ATTATGACATTTTGTTTTGTCATAAAACAATTATTTCTATTCATAC
* * * ** * * *** *
69284 AAG-TTTTTCCAAAATAAAATAATATTGCTTTATTAATATTTCAAAAATTAAGAAGTTGGAGTTT
1 AAGCTTATT-CGAAATAAAATAATACTAATTTATTAATATTTCTAAAATTAATAAGTAAAAGATT
** * * ** * * * * *
69348 TAAAAAATAAATCAATTTATCAAATTA-CTCAAATAATTCT-AGCCATTTGAATAATTATCTATT
65 TAAAAAATAAATCTGTTTACCGAACAAGTTCAAATAGTTATGA-CTATTTGAACAATTATCTATT
* * *
69411 TCAAATCGTTATGA-ACTTTTGTTATT-TCATAAAACAATTGTTTTTCA-TCATAC
129 TCAAATCATTATGACA-TTTTGTT-TTGTCATAAAACAATTATTTCT-ATTCATAC
* * * * * *
69464 AAGCCTATTTGGAATAAAATAATACTAATTTACTAATATATC-AAAA--ATTAA-TAAAAGATTT
1 AAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCTAAAATTAATAAGTAAAAGATTT
* * * * * *
69525 AAAAAGTTAATCTATTTACTGAACCAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTC
66 AAAAAATAAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTC
** * * * * *
69590 AAATTGTTATAACCTTTTGTTATCTCATAAAACAATTATTTCTATTCACAC
131 AAATCATTATGACATTTTGTTTTGTCATAAAACAATTATTTCTATTCATAC
* * * * * *
69641 AAGTTTATTCGAAATAAAATAAAACTAATATAATAATATTT-TAAAAATTAATAACTAAGAGATT
1 AAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCT-AAAATTAATAAGTAAAAGATT
* * * * * * * * * *
69705 TAAAAAATAAATTTGTTTACTGAACTAGTTCACATATTTAAGGCTATATGAAC-ATTCTTTATTT
65 TAAAAAATAAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTT
* * * * * *
69769 CAAATCATTATGACATTTTGTTTTGTCGTAAAATAGTTTTTTC-ATTTCTTAGT
130 CAAATCATTATGACATTTTGTTTTGTCATAAAACAATTATTTCTA-TTCATA-C
* * * * * * *
69822 AA-CTTATTTGGAATAAAGTAAAACAAATTTATTAATATTTC-AAAACTTAATAAGCAAGAGATT
1 AAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCTAAAA-TTAATAAGTAAAAGATT
* * * * * * *
69885 TAAAAAA-CAATTTAGTTTGCCTAACCAGTTCAAATAATTATGACTGTTTGAACAATTATCTATT
65 TAAAAAATAAATCT-GTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATT
** * * * * * *
69949 TCAAATCATTATGTTATTTTATTTTGTCATAAAACAAATATTTTTGTACATAT
129 TCAAATCATTATGACATTTTGTTTTGTCATAAAACAATTATTTCTATTCATAC
* * * * *
70002 AAGTTTGTTCGAAATAAAATAATATTAATTTAATAATATTT-TGAAAATTAAGAAGTAAGAA-AT
1 AAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCT-AAAATTAATAAGTAA-AAGAT
* * * ** ** * * *
70065 TTAAAAAGTAAAACTATTTACTAAACCGGTTCAATTAGTTATAACTATTTGAACAATTATTTATT
64 TTAAAAAATAAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATT
* * * *
70130 TCAAATCAGTATGACCA-TTTGTATTGTCATAAAATAATTATTTCTGTTCATAC
129 TCAAATCATTATGA-CATTTTGTTTTGTCATAAAACAATTATTTCTATTCATAC
* * * ** *
70183 -AGTCTTATTCGGAATAAAGTAATACTAATTTATCAATATTT-GGAAATTAATAAGTAATAGATT
1 AAG-CTTATTCGAAATAAAATAATACTAATTTATTAATATTTCTAAAATTAATAAGTAAAAGATT
* ** ** * * *
70246 TAAAAAATGAATCAATTGGCCTGACCAA-TGCAAATAGTTATGACTATTTGAATAATTATCTATT
65 TAAAAAATAAATCTGTTTACC-GAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATT
* * * * *
70310 TCAAATCATTATGACCTTTTGTTTTATCACAAAACAATTGTTTCTA-TCTGTAC
129 TCAAATCATTATGACATTTTGTTTTGTCATAAAACAATTATTTCTATTC-ATAC
* * * * *
70363 TAGCTTATTTGAAATAATATAATTCTATTTTATTAATA-TTCTAAAAATTAATAAG----AGATT
1 AAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCT-AAAATTAATAAGTAAAAGATT
* * * *
70423 TAAAAAATGAATCTGTTTAGCC-AACAAGTACAAATAATTATGACTATTTGAATAATTAT-TATT
65 TAAAAAATAAATCTGTTTA-CCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATT
* * * * * *
70486 TCTAATCACTATAACCTTTTGTTTTGTCCTAAAACAA-AATTTTCTATTCATAC
129 TCAAATCATTATGACATTTTGTTTTGTCATAAAACAATTA-TTTCTATTCATAC
* * * * *
70539 AAGCTTATTTC-AAATAAAATTATACAAATTTAGTAATA-TTCGACAACTT-ATAAGTAAAAGAT
1 AAGCTTA-TTCGAAATAAAATAATACTAATTTATTAATATTTCTA-AAATTAATAAGTAAAAGAT
* * * * * *
70601 TTAAAAAATAAATCTATTTATCGAATAAGTTTAAATAATTATGACTATTTGAACAATTATTTATT
64 TTAAAAAATAAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATT
* * * *
70666 TCAAA-CTTTTATGAC-TTTTGTTTTTTCATGACACAATT
129 TCAAATC-ATTATGACATTTTGTTTTGTCATAAAACAATT
70704 TAATATTTAT
Statistics
Matches: 1825, Mismatches: 401, Indels: 172
0.76 0.17 0.07
Matches are distributed among these distances:
174 3 0.00
175 140 0.08
176 228 0.12
177 174 0.10
178 113 0.06
179 141 0.08
180 401 0.22
181 585 0.32
182 38 0.02
183 2 0.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (181 bp):
AAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCTAAAATTAATAAGTAAAAGATTT
AAAAAATAAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTC
AAATCATTATGACATTTTGTTTTGTCATAAAACAATTATTTCTATTCATAC
Found at i:69382 original size:356 final size:353
Alignment explanation
Indices: 68222--70703 Score: 1603
Period size: 356 Copynumber: 6.9 Consensus size: 353
68212 AGCTTATTTG
* ** * * *
68222 AAATAAAATAGCT-CTAATTTATTAATATACCAAAAATTAATGAGTAAGAGAATTAAAAAAATGA
1 AAATAAAATA-ATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAG-ATTTAAAAAATAA
* * * * * **
68286 ATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATCTA-AATAATTATCTATTTCAAAACATT
64 ATCTGTTTATCAAACAAGTTCAAATAGTTATAACTAT-TAGAACAATTATATATTTC-AAATTTT
* * * * * * ** *
68350 ATGACCATTTGTTTTGTCATAAAATAATTAG-TTCTGTTCATGCAAGCTTATTTCAAATACAATA
127 ATGATCTTTTGTTTAGTCATAAAACAATT-GTTTC-ATTCATACAAGCTTATTTGGAATAAAATA
* * ** * * ** * ***
68414 ATA-TAAATTTATTAAAACTCCAAAATTAATAAATAAAAACTTAAAAAATAAATATATTTTTTGA
190 ATACT-AATTTATTAATATTTAAAAATTAAT-AA-AGAGA-TTTTAAAA-AAATCTATTTACCGA
* * * * *
68478 CCACA-TTC-AATAGTTATGACTATTTAAATAATTATCTATTTCAAATCATTAAGACAATTTGTT
250 ACA-AGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCGTTATGACATTTTGTT
* * * *
68541 TTGTCATAAACCAATTATTTCTATTCATACAAGCTTATTCG
314 TTATCATAAAACAATTATTTCTATTCATAAAAG-TTATTCA
* * * *
68582 AAATAAAATAATATTAATTTATTAATATTTCTAAAATTAATAAGTAAAAGATTTAAATAATAAAT
1 AAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAAT
* * *
68647 TTGTTTACCAAACAAGTTCAAATAGTTATTACTATTTA-AACAATTATATATTTCAAATCTTTAT
66 CTGTTTATCAAACAAGTTCAAATAGTTATAACTA-TTAGAACAATTATATATTTCAAAT-TTTAT
* * * * *
68711 GATATTTTGTTTTGTCATAAAACAATTGTTTCTATTCACACAAGTTTATTTGGAATAAAATAACA
129 GATCTTTTGTTTAGTCATAAAACAATTGTTTC-ATTCATACAAGCTTATTTGGAATAAAATAATA
* * *
68776 CTAATTTATTATTATTCTAAAAATTAATAAGTTAGAGATTTAAAAAATAAATCTGTTTACCGAAC
193 CTAATTTATTAATATT-TAAAAATTAATAA---AGAGATTT-TAAAA-AAATCTATTTACCGAAC
* * * * * * *
68841 AAGTTTAAATAGTCATGTCCATTTAAACTATTATTTATTTTAAATCGTTATGACATTTTGTTTTA
252 AAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCGTTATGACATTTTGTTTTA
* * * *
68906 TTATAAAATAATTGTTTCTATTCATATAAAATTATTCA
317 TCATAAAACAATTATTTCTATTCATA-AAAGTTATTCA
* *
68944 GAATAAAATAATACTAATTTATTACTATTTCAAAAA-T--TAA-TAAG-GATTT-AAAAATAAAT
1 AAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAAT
* * * * * *
69003 GTGTTTTTCGAAGC-AGTTCAAATAGTTAAAACTATTAGAACAATTATTTA-TTCTAAATTATTC
66 CTGTTTATC-AAACAAGTTCAAATAGTTATAACTATTAGAACAATTATATATTTC-AAATT-TTA
* * * * * *** * *
69066 TGATCTATTGTTTAGCCAAAAAATAATTGTTTCAGTTCATACATGCTTATTCAAAATATAGTAAT
128 TGATCTTTTGTTTAGTCATAAAACAATTGTTTCA-TTCATACAAGCTTATTTGGAATAAAATAAT
* * **
69131 ACTAATTTATTAAAATTTAGAAAATTAATAAAGAAATTTTAAAAAAATCTATTTACCGAATGAGT
192 ACTAATTTATTAATATTTA-AAAATTAATAAAGAGATTTTAAAAAAATCTATTTACCGAACAAGT
* * * **
69196 TCAAATAGTTATGACTATTTGAACAATTATCTATTT-AAAACTGTTATGACCTTTCATTTTATCA
256 TCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATC-GTTATGACATTTTGTTTTATCA
* * * *
69260 TAAAACAATTGTTTCAATACATAAAAGTTTTTCCA
320 TAAAACAATTATTTCTATTCATAAAAGTTATT-CA
* ** * ** *
69295 AAATAAAATAATATTGCTTTATTAATATTTCAAAAATTAAGAAGTTGGAGTTTTAAAAAATAAAT
1 AAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAAT
** ** * * * * * * * * *
69360 CAATTTATCAAATTA-CTCAAATAATTCTAGCCATTTGAATAATTATCTATTTCAAATCGTTATG
66 CTGTTTATCAAACAAGTTCAAATAGTTATAACTATTAGAACAATTATATATTTCAAAT-TTTATG
* * *
69424 AACTTTTG-TTATTTCATAAAACAATTGTTTTTCA-TCATACAAGCCTATTTGGAATAAAATAAT
130 ATCTTTTGTTTA-GTCATAAAACAATTG--TTTCATTCATACAAGCTTATTTGGAATAAAATAAT
* * * *
69487 ACTAATTTACTAATATATCAAAAATTAATAAA-AGA-TTTAAAAAGTTAATCTATTTACTGAACC
192 ACTAATTTATTAATAT-TTAAAAATTAATAAAGAGATTTTAAAAA---AATCTATTTACCGAACA
* * * * * * *
69550 AGTTCAAATAGTTATGACTATTTGAACAATTATATATTTCAAATTGTTATAACCTTTTGTTATCT
253 AGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCGTTATGACATTTTGTTTTAT
* * *
69615 CATAAAACAATTATTTCTATTCACACAAGTTTATTCG
318 CATAAAACAATTATTTCTATTCATAAAAG-TTATTCA
* * * * *
69652 AAATAAAATAAAACTAATATAATAATATTTTAAAAATTAATAACTAAGAGATTTAAAAAATAAAT
1 AAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAAT
* * * * * * *
69717 TTGTTTA-CTGAACTAGTTCACATA-TT-TAAGGCTA-TATGAAC-ATTCTTTATTTCAAATCAT
66 CTGTTTATC-AAACAAGTTCAAATAGTTATAA--CTATTA-GAACAATTATATATTTCAAAT-TT
* * * * * * * *
69777 TATGA-CATTTTGTTTTGTCGTAAAATAGTTTTTTCATTTCTTAGTAA-CTTATTTGGAATAAAG
126 TATGATC-TTTTGTTTAGTCATAAAACAATTGTTTCA-TTCATA-CAAGCTTATTTGGAATAAAA
* * * * * *
69840 TAAAACAAATTTATTAATATTTCAAAACTTAATAAGCAAGAGATTTAAAAAACAATTTAGTTTGC
188 TAATACTAATTTATTAATATTT-AAAAATTAAT-A--AAGAGATTTTAAAAA-AATCTA-TTTAC
* * * * * * ** *
69905 CTAACCAGTTCAAATAATTATGACTGTTTGAACAATTATCTATTTCAAATCATTATGTTATTTTA
247 CGAACAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCGTTATGACATTTTG
* * * * * * * *
69970 TTTTGTCATAAAACAAATATTTTTGTACATATAAGTTTGTTCG
312 TTTTATCATAAAACAATTATTTCTATTCATAAAAG-TTATTCA
* * ** * * * *
70013 AAATAAAATAATATTAATTTAATAATATTTTGAAAATTAAGAAGTAAGAAATTTAAAAAGTAAAA
1 AAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAAT
* ** * * * **
70078 CTATTTA-CTAAACCGGTTCAATTAGTTATAACTATTTGAACAATTATTTATTTCAAATCAGTAT
66 CTGTTTATC-AAACAAGTTCAAATAGTTATAACTATTAGAACAATTATATATTTCAAAT-TTTAT
* * * * * * *
70142 GACCATTTGTATT-GTCATAAAATAATTATTTCTGTTCATAC-AGTCTTATTCGGAATAAAGTAA
129 GATCTTTTGT-TTAGTCATAAAACAATTGTTTC-ATTCATACAAG-CTTATTTGGAATAAAATAA
* ** * * * **
70205 TACTAATTTATCAATATTTGGAAATTAATAAGTAATAGATTTAAAAAATGAATCAATTGGCCTGA
191 TACTAATTTATTAATATTTAAAAATTAAT-A--AAGAGATTTTAAAAA--AATCTATTTACC-GA
* * * * * *
70270 CCAA-TGCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTT
250 ACAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCGTTATGACATTTTGTTT
* * * ** **
70334 TATCACAAAACAATTGTTTCTA-TCTGTACTAGCTTATTTG
315 TATCATAAAACAATTATTTCTATTC-ATAAAAG-TTATTCA
* * * *
70374 AAATAATATAATTCTATTTTATTAATA-TTCTAAAAA-T--TAA-TAAGAGATTTAAAAAATGAA
1 AAATAAAATAATACTAATTTATTAATATTTC-AAAAATTAATAAGTAAGAGATTTAAAAAATAAA
* * * * * * * * **
70434 TCTGTTTAGCCAACAAGTACAAATAATTATGACTATTTGAATAATTAT-TATTTCTAATCACTAT
65 TCTGTTTATCAAACAAGTTCAAATAGTTATAACTATTAGAACAATTATATATTTCAAAT-TTTAT
* * * * * ** *
70498 AACCTTTTGTTTTGTCCTAAAACAAAAT-TTTCTATTCATACAAGCTTATTTCAAATAAAATTAT
129 GATCTTTTGTTTAGTCATAAAAC-AATTGTTTC-ATTCATACAAGCTTATTTGGAATAAAATAAT
* * * ** * *
70562 ACAAATTTAGTAATATTCGACAACTTATAAGTAAA-AGATTTAAAAAATAAATCTATTTATCGAA
192 ACTAATTTATTAATATT-TA-AAAAT-TAA-TAAAGAGATTT-TAAAA-AAATCTATTTACCGAA
* * * * * *
70626 TAAGTTTAAATAATTATGACTATTTGAACAATTATTTATTTCAAA-CTTTTATGAC-TTTTGTTT
251 CAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATC-GTTATGACATTTTGTTT
* * *
70689 TTTCATGACACAATT
315 TATCATAAAACAATT
70704 TAATATTTAT
Statistics
Matches: 1679, Mismatches: 363, Indels: 165
0.76 0.16 0.07
Matches are distributed among these distances:
350 11 0.01
351 118 0.07
352 5 0.00
353 7 0.00
354 10 0.01
355 48 0.03
356 361 0.22
357 330 0.20
358 41 0.02
359 135 0.08
360 68 0.04
361 331 0.20
362 206 0.12
363 8 0.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (353 bp):
AAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAAT
CTGTTTATCAAACAAGTTCAAATAGTTATAACTATTAGAACAATTATATATTTCAAATTTTATGA
TCTTTTGTTTAGTCATAAAACAATTGTTTCATTCATACAAGCTTATTTGGAATAAAATAATACTA
ATTTATTAATATTTAAAAATTAATAAAGAGATTTTAAAAAAATCTATTTACCGAACAAGTTCAAA
TAGTTATGACTATTTAAACAATTATCTATTTCAAATCGTTATGACATTTTGTTTTATCATAAAAC
AATTATTTCTATTCATAAAAGTTATTCA
Found at i:69526 original size:532 final size:537
Alignment explanation
Indices: 68222--70665 Score: 1262
Period size: 537 Copynumber: 4.5 Consensus size: 537
68212 AGCTTATTTG
* * * * * * *
68222 AAATAAAATAGCTCTAATTTATTAATATACCAAAAATTAATG-AGTAAGAGAATTAAAAAAATGA
1 AAATAAAATAACACTAATTTATTAATATTCTAAAAATTAA-GAAGTTAGAG-ATTTAAAAAATAA
** * * * * * * * *
68286 ATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATCTAAA-TAATTATCTATTTCAAAACATT
64 ATCAATTTACCAAACAAGCTCAAATAGTCATGTCCATTTAAACT-ATTATCTATTTCAAATCGTT
* * * * * *
68350 ATGACCA-TTTGTTTTGTCATAAAATAATTAG-TTCTGTTCATGC-AAGCTTATTTCA-AATACA
128 ATGA-CATTTTGTTTTATCATAAAACAATT-GTTTCTATTCATACAAAAC-TA-TTCAGAATAAA
* * * * * *
68411 ATAATA-TAAATTTATTAA-A-ACTCCAAAATTAATAAATAAAAACTTAAAAAATAAATATATTT
189 ATAATACT-AATTTACTAATATA-T-C-AAA--AATTAATAAAGATTTAAAAAGTAAATCTATTT
** * ** * * * **
68473 TTTG-ACCACATTC-AATAGTTATGACTATTTA-AATAATTATCTATT-TCAAATCATTAAGA-C
248 ACTGAACCA-GTTCAAATAGTTAAAACTA-TTAGAACAATTATATATTCT-AAATTATTCTGATC
* * * * ** * * *
68533 AATTTGTTTTGTCATAAACCAATTATTTCTA-TTCATACAAGCTTATTCGAAATAAAATAATATT
310 TA-TTGTTTAGCCAAAAAATAATTGTTTC-AGTTCATACAAGCTTATTCAAAATAAAATAATACT
* ** * *
68597 AATTTATTAATATTTCTAAAATTAATAAGTAAAAGATTTAAATAATAAATTTGTTTACCAAACAA
373 AATTTATTAAAATTTAGAAAATTAATAAG-AAAAGATTTAAATAATAAATCTATTTACCAAACAA
* * * ** *
68662 GTTCAAATAGTTATTACTATTTAAACAATTATATATTTCAAATCTTTATGATATTTTGTTTTGTC
437 GTTCAAATAGTTATGACTATTTAAACAATTATATATTTCAAAACTTTATGACATTTCATTTTATC
* * * **
68727 ATAAAACAATTGTTTCTATTCACACAAGTTTATTTG
502 ATAAAACAATTGTTTCAATACACAAAAGTTTATTCA
* * *
68763 GAATAAAATAACACTAATTTATTATTATTCTAAAAATTAATAAGTTAGAGATTTAAAAAATAAAT
1 AAATAAAATAACACTAATTTATTAATATTCTAAAAATTAAGAAGTTAGAGATTTAAAAAATAAAT
** * * * * *
68828 CTGTTTACCGAACAAGTTTAAATAGTCATGTCCATTTAAACTATTATTTATTTTAAATCGTTATG
66 CAATTTACCAAACAAGCTCAAATAGTCATGTCCATTTAAACTATTATCTATTTCAAATCGTTATG
* * * *
68893 ACATTTTGTTTTATTATAAAATAATTGTTTCTATTCATATAAAATTATTCAGAATAAAATAATAC
131 ACATTTTGTTTTATCATAAAACAATTGTTTCTATTCATACAAAACTATTCAGAATAAAATAATAC
* * * * * * * *
68958 TAATTTATTACTATTTCAAAAATTAATAAGGATTTAAAAA-TAAATGTGTTT-TTCGAAGCAGTT
196 TAATTTACTAATATATCAAAAATTAATAAAGATTTAAAAAGTAAATCTATTTACT-GAACCAGTT
*
69021 CAAATAGTTAAAACTATTAGAACAATTATTTATTCTAAATTATTCTGATCTATTGTTTAGCCAAA
260 CAAATAGTTAAAACTATTAGAACAATTATATATTCTAAATTATTCTGATCTATTGTTTAGCCAAA
* * *
69086 AAATAATTGTTTCAGTTCATACATGCTTATTCAAAATATAGTAATACTAATTTATTAAAATTTAG
325 AAATAATTGTTTCAGTTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAAAATTTAG
* * * **
69151 AAAATTAATAA-AGAA-ATTTTAA-AA-AAATCTATTTACCGAATGAGTTCAAATAGTTATGACT
390 AAAATTAATAAGAAAAGATTTAAATAATAAATCTATTTACCAAACAAGTTCAAATAGTTATGACT
* * *
69212 ATTTGAACAATTATCTATTT-AAAACTGTTATGACCTTTCATTTTATCATAAAACAATTGTTTCA
455 ATTTAAACAATTATATATTTCAAAACT-TTATGACATTTCATTTTATCATAAAACAATTGTTTCA
*
69276 ATACATAAAAGTTT-TTCCA
519 ATACACAAAAGTTTATT-CA
* * ** * *
69295 AAATAAAATAATATTGCTTTATTAATATT-TCAAAAATTAAGAAGTTGGAGTTTTAAAAAATAAA
1 AAATAAAATAACACTAATTTATTAATATTCT-AAAAATTAAGAAGTTAGAGATTTAAAAAATAAA
* ** * *
69359 TCAATTTATCAAATTA-CTCAAATAATTC-TAG-CCATTTGAA-TAATTATCTATTTCAAATCGT
65 TCAATTTACCAAACAAGCTCAAAT-AGTCAT-GTCCATTTAAACT-ATTATCTATTTCAAATCGT
* ** **
69420 TATGA-ACTTTTGTTATT-TCATAAAACAATTGTTTTTCA-TCATACAAGCCTATTTGGAATAAA
127 TATGACA-TTTTGTT-TTATCATAAAACAATTGTTTCT-ATTCATACAAAACTATTCAGAATAAA
*
69482 ATAATACTAATTTACTAATATATCAAAAATTAATAAAAGATTTAAAAAGTTAATCTATTTACTGA
189 ATAATACTAATTTACTAATATATCAAAAATTAAT-AAAGATTTAAAAAGTAAATCTATTTACTGA
** * * * * * *
69547 ACCAGTTCAAATAGTTATGACTATTTGAACAATTATATATT-TCAAATTGTTATAACCTTTTG-T
253 ACCAGTTCAAATAGTTAAAACTATTAGAACAATTATATATTCT-AAATTATTCTGATCTATTGTT
* * * * * * * * * *
69610 TATCTCATAAAACAATTATTTCTA-TTCACACAAGTTTATTCGAAATAAAATAAAACTAATATAA
317 TAGC-CAAAAAATAATTGTTTC-AGTTCATACAAGCTTATTCAAAATAAAATAATACTAATTTAT
* * * * * * ** * *
69674 TAATATTTTA-AAAATTAATAACTAAGAGATTTAAAAAATAAATTTGTTTACTGAACTAGTTCAC
380 TAA-AATTTAGAAAATTAATAA-GAAAAGATTTAAATAATAAATCTATTTACCAAACAAGTTCAA
* * * * * * * * * ** * *
69738 ATATTTAAGGCTATATGAAC-ATTCTTTATTTCAAATCATTATGACATTTTGTTTTGTCGTAAAA
443 ATAGTTATGACTATTTAAACAATTATATATTTCAAAACTTTATGACATTTCATTTTATCATAAAA
* * * * * ** * * **
69802 TAGTTTTTTCATTTCTTAGTAA-CTTATTTG
508 CAATTGTTTCAATACACA-AAAGTTTATTCA
* * * * * * ** * *
69832 GAATAAAGTAAAACAAATTTATTAATATT-TCAAAACTTAATAAGCAAGAGATTTAAAAAACAAT
1 AAATAAAATAACACTAATTTATTAATATTCT-AAAAATTAAGAAGTTAGAGATTTAAAAAATAAA
* * * * * * * * * ** * * *
69896 TTAGTTTGCCTAACCAGTTCAAATAATTATGACTGTTTGAACAATTATCTATTTCAAATCATTAT
65 TCAATTTACCAAACAAGCTCAAATAGTCATGTCCATTTAAACTATTATCTATTTCAAATCGTTAT
** * * * * * * * * *** *
69961 GTTATTTTATTTTGTCATAAAACAAATATTTTTGTACATATAAGTTTGTTC-GAAATAAAATAAT
130 GACATTTTGTTTTATCATAAAACAATTGTTTCTATTCATACAAAACTATTCAG-AATAAAATAAT
* * * ** * * *
70025 ATTAATTTAATAATATTTTGAAAATTAAGAAGTAAGAAATTTAAAAAGTAAAACTATTTACTAAA
194 ACTAATTTACTAATATATCAAAAATT---AA-TAA-AGATTTAAAAAGTAAATCTATTTACTGAA
* * * * * * * * *
70090 CCGGTTCAATTAGTTATAACTATTTGAACAATTATTTATT-TCAAATCAGTATGA-CCATTTGTA
254 CCAGTTCAAATAGTTAAAACTATTAGAACAATTATATATTCT-AAATTATTCTGATCTA-TTGT-
* * * * ** *
70153 TT-GTCATAAAATAATTATTTCTGTTCATAC-AGTCTTATTCGGAATAAAGTAATACTAATTTAT
316 TTAGCCAAAAAATAATTGTTTCAGTTCATACAAG-CTTATTCAAAATAAAATAATACTAATTTAT
* * * * * * * ** * * *
70216 CAATATTT-GGAAATTAATAAGTAATAGATTTAAAAAATGAATCAATTGGCCTGACCAA-TGCAA
380 TAAAATTTAGAAAATTAATAAG-AAAAGATTTAAATAATAAATCTATTTACC-AAACAAGTTCAA
* * * * * * ** *
70279 ATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTATCACAAAA
443 ATAGTTATGACTATTTAAACAATTATATATTTCAAAACTTTATGACATTTCATTTTATCATAAAA
* ** ** * **
70344 CAATTGTTTCTAT-CTGTACTAGCTTATTTG
508 CAATTGTTTCAATAC-ACAAAAGTTTATTCA
* ** * * *
70374 AAATAATATAATTCTATTTTATTAATATTCTAAAAATT---AA-TAAGAGATTTAAAAAATGAAT
1 AAATAAAATAACACTAATTTATTAATATTCTAAAAATTAAGAAGTTAGAGATTTAAAAAATAAAT
** * * * * * * **
70435 CTGTTTAGCC-AACAAG-TACAAATAATTATGACTATTTGAA-TAATTAT-TATTTCTAATCACT
66 CAATTTA-CCAAACAAGCT-CAAATAGTCATGTCCATTTAAACT-ATTATCTATTTCAAATCGTT
* * * * * *
70496 ATAACCTTTTGTTTTGTCCTAAAACAAAAT-TTTCTATTCATAC-AAGCTTATTTCA-AATAAAA
128 ATGACATTTTGTTTTATCATAAAAC-AATTGTTTCTATTCATACAAAAC-TA-TTCAGAATAAAA
* * * ** *
70558 TTATACAAATTTAGTAATAT-TCGACAACTTATAAGTAAAAGATTTAAAAAATAAATCTATTTA-
190 TAATACTAATTTACTAATATATC-A-AAAAT-TAA-T-AAAGATTTAAAAAGTAAATCTATTTAC
** * * ** * *
70621 TCGAATAAGTTTAAATAATTATGACTATTTGAACAATTATTTATT
250 T-GAACCAGTTCAAATAGTTAAAACTATTAGAACAATTATATATT
70666 TCAAACTTTT
Statistics
Matches: 1492, Mismatches: 334, Indels: 159
0.75 0.17 0.08
Matches are distributed among these distances:
530 2 0.00
531 116 0.08
532 178 0.12
533 121 0.08
534 13 0.01
535 8 0.01
536 85 0.06
537 302 0.20
538 209 0.14
539 16 0.01
540 120 0.08
541 108 0.07
542 211 0.14
543 1 0.00
544 2 0.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (537 bp):
AAATAAAATAACACTAATTTATTAATATTCTAAAAATTAAGAAGTTAGAGATTTAAAAAATAAAT
CAATTTACCAAACAAGCTCAAATAGTCATGTCCATTTAAACTATTATCTATTTCAAATCGTTATG
ACATTTTGTTTTATCATAAAACAATTGTTTCTATTCATACAAAACTATTCAGAATAAAATAATAC
TAATTTACTAATATATCAAAAATTAATAAAGATTTAAAAAGTAAATCTATTTACTGAACCAGTTC
AAATAGTTAAAACTATTAGAACAATTATATATTCTAAATTATTCTGATCTATTGTTTAGCCAAAA
AATAATTGTTTCAGTTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAAAATTTAGA
AAATTAATAAGAAAAGATTTAAATAATAAATCTATTTACCAAACAAGTTCAAATAGTTATGACTA
TTTAAACAATTATATATTTCAAAACTTTATGACATTTCATTTTATCATAAAACAATTGTTTCAAT
ACACAAAAGTTTATTCA
Found at i:71112 original size:17 final size:18
Alignment explanation
Indices: 71082--71115 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
71072 ACAAATATTA
*
71082 ATTATTAATTAAAAATAT
1 ATTATTAATAAAAAATAT
71100 ATTA-TAATAAAAAATA
1 ATTATTAATAAAAAATA
71116 AACTATTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
ATTATTAATAAAAAATAT
Found at i:71191 original size:20 final size:19
Alignment explanation
Indices: 71130--71199 Score: 70
Period size: 20 Copynumber: 3.4 Consensus size: 19
71120 ATTTGTTATG
71130 TAATATAATTATATTACATAAT
1 TAATA-AATT-TATT-CATAAT
*
71152 TATATAAATTTA-TAAGTAAT
1 TA-ATAAATTTATTCA-TAAT
71172 CTAATAAATTTATTCATAAT
1 -TAATAAATTTATTCATAAT
71192 TAATAAAT
1 TAATAAAT
71200 AATTATAAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
19 9 0.21
20 18 0.43
21 6 0.14
22 6 0.14
23 3 0.07
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.44
Consensus pattern (19 bp):
TAATAAATTTATTCATAAT
Found at i:71432 original size:18 final size:18
Alignment explanation
Indices: 71398--71444 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 18
71388 ATCTATACAA
71398 TTATAATTAATTTAATTTAAT
1 TTATAATT-A-TTAA-TTAAT
71419 TT-TAATTATTAATTAAT
1 TTATAATTATTAATTAAT
71436 TTATAATTA
1 TTATAATTA
71445 ATAAAAACTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 7 0.28
18 10 0.40
19 1 0.04
20 5 0.20
21 2 0.08
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TTATAATTATTAATTAAT
Found at i:71445 original size:22 final size:23
Alignment explanation
Indices: 71403--71446 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
71393 TACAATTATA
*
71403 ATTAATTTAATTTAATTTTAATT
1 ATTAATTTAATTTAATATTAATT
71426 ATTAA-TTAATTT-ATAATTAAT
1 ATTAATTTAATTTAAT-ATTAAT
71447 AAAAACTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 2 0.11
22 12 0.63
23 5 0.26
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (23 bp):
ATTAATTTAATTTAATATTAATT
Found at i:73161 original size:9 final size:9
Alignment explanation
Indices: 73138--73203 Score: 50
Period size: 9 Copynumber: 7.4 Consensus size: 9
73128 CAAATCATTC
73138 TAATATTA-
1 TAATATTAT
73146 T-ATATTAT
1 TAATATTAT
73154 TAATATTA-
1 TAATATTAT
73162 TACATATTTATT
1 TA-ATA-TTA-T
*
73174 TAA-AATAT
1 TAATATTAT
*
73182 TAATATAAT
1 TAATATTAT
*
73191 TAATAATAT
1 TAATATTAT
73200 TAAT
1 TAAT
73204 TAATATATTA
Statistics
Matches: 46, Mismatches: 5, Indels: 13
0.72 0.08 0.20
Matches are distributed among these distances:
7 6 0.13
8 8 0.17
9 25 0.54
10 4 0.09
11 1 0.02
12 2 0.04
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (9 bp):
TAATATTAT
Found at i:73200 original size:18 final size:16
Alignment explanation
Indices: 73173--73207 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 16
73163 ACATATTTAT
73173 TTAAAATATTAATATAA
1 TTAAAATATTAAT-TAA
73190 TTAATAATATTAATTAA
1 TTAA-AATATTAATTAA
73207 T
1 T
73208 ATATTATTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
TTAAAATATTAATTAA
Found at i:73205 original size:13 final size:13
Alignment explanation
Indices: 73182--73213 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
73172 TTTAAAATAT
73182 TAATA-TAATTAA
1 TAATATTAATTAA
73194 TAATATTAATTAA
1 TAATATTAATTAA
73207 T-ATATTA
1 TAATATTA
73214 TTAGTAAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
TAATATTAATTAA
Found at i:73967 original size:180 final size:181
Alignment explanation
Indices: 73566--74024 Score: 491
Period size: 180 Copynumber: 2.5 Consensus size: 181
73556 GTTCATACAT
* * * * * ** * *
73566 GCTTATTCAAAATAAAAAAATACTAATTTATTAACATTCAAAAAATTAATAAGCAAGAAATTTAA
1 GCTTATCCCAAATAAAATAATATTAATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTT-A
* * * * ** * * * * *
73631 AAAAATAAATTTGCTTACCAAA-CAAGTTCAAATGGTTATGACTATTTGAATAATTATCTA--TC
65 AAAAATAAATCTGTTTATCAAACCAA-TTAAAATAATTATGGCCATTTGAACATTTATTTATTTC
* *
73693 AAAATCATTATGACCTTTTATTTTATCATAAAACAATTGTTTTAGATCATAAAA
129 -AAATCATTATGAACTTTTATTTTATCATAAAACAATTGTTTTACATCATAAAA
* * *
73747 GCTTGTCCCAAATAAAATAATATTACTTTATTAATATTTTAAAAATTGATAAGTTAA-AGATTTA
1 GCTTATCCCAAATAAAATAATATTAATTTATTAATATTTTAAAAATTAATAAG-TAAGAGATTTA
* *
73811 AAACATAAAT-TAGTTTATCAAATCAATTAAAATAATTATGGCCATTTGAACATTTATTTATTTC
65 AAAAATAAATCT-GTTTATCAAACCAATTAAAATAATTATGGCCATTTGAACATTTATTTATTTC
* ***
73875 AAATCATTATGAACTTTTGTTTTGA-CATAAAACAATTGTTTT-CATCATGCTA
129 AAATCATTATGAACTTTTATTTT-ATCATAAAACAATTGTTTTACATCATAAAA
* **
73927 GCTTATTCGTAATAAAATAATATTAATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAA
1 GCTTATCCCAAATAAAATAATATTAATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAA
* *
73992 AAAATAAATCTGTTTATCGAACCAATTCAAATA
66 AAAATAAATCTGTTTATCAAACCAATTAAAATA
74025 GCTATGACTA
Statistics
Matches: 231, Mismatches: 39, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
179 4 0.02
180 132 0.57
181 90 0.39
182 5 0.02
ACGTcount: A:0.45, C:0.10, G:0.07, T:0.38
Consensus pattern (181 bp):
GCTTATCCCAAATAAAATAATATTAATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAA
AAAATAAATCTGTTTATCAAACCAATTAAAATAATTATGGCCATTTGAACATTTATTTATTTCAA
ATCATTATGAACTTTTATTTTATCATAAAACAATTGTTTTACATCATAAAA
Found at i:74418 original size:19 final size:19
Alignment explanation
Indices: 74386--74423 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
74376 TAAACTTTAA
*
74386 ATATTAATTATTAATCTAT
1 ATATTAATTATTAAACTAT
74405 ATATTAA-TATTTAAACTAT
1 ATATTAATTA-TTAAACTAT
74424 TGCAATATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (19 bp):
ATATTAATTATTAAACTAT
Found at i:74684 original size:20 final size:22
Alignment explanation
Indices: 74661--74700 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
74651 ATATTTAAAA
74661 TTTAAAT-ATT-TATATTATAT
1 TTTAAATAATTATATATTATAT
*
74681 TTTAATTAATTATATATTAT
1 TTTAAATAATTATATATTAT
74701 TATTAAAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 3 0.18
22 8 0.47
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTAAATAATTATATATTATAT
Found at i:74723 original size:58 final size:59
Alignment explanation
Indices: 74653--74795 Score: 145
Period size: 58 Copynumber: 2.5 Consensus size: 59
74643 TAAAATTAAT
* * *
74653 ATTTAAAATTTAAATATTTATATTATATTTTAATTAATTATATATTAT-T-ATTAAAGTAG
1 ATTTAATATTTAAATATTAATA-TATATTTTAATTAATTATA-ATTATATAAATAAAGTAG
* * * * *
74712 A-TTATTATTTAATTA-TAACA-ATTATTTTAATTAATTTTAATTATATAAATAAATTAG
1 ATTTAATATTTAAATATTAATATA-TATTTTAATTAATTATAATTATATAAATAAAGTAG
74769 ATTTAATATTTAAA-ATTAATATATATT
1 ATTTAATATTTAAATATTAATATATATT
74796 ATAGTATTAA
Statistics
Matches: 67, Mismatches: 11, Indels: 13
0.74 0.12 0.14
Matches are distributed among these distances:
55 6 0.09
56 17 0.25
57 13 0.19
58 29 0.43
59 2 0.03
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (59 bp):
ATTTAATATTTAAATATTAATATATATTTTAATTAATTATAATTATATAAATAAAGTAG
Found at i:74999 original size:19 final size:18
Alignment explanation
Indices: 74971--75008 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
74961 TTATAATAAG
74971 TTATAGTATA-ACTTATTA
1 TTATAGTATATA-TTATTA
74989 TTATAAGTATATATTATTA
1 TTAT-AGTATATATTATTA
75008 T
1 T
75009 AATGTTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 13 0.72
20 1 0.06
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (18 bp):
TTATAGTATATATTATTA
Found at i:75182 original size:30 final size:31
Alignment explanation
Indices: 75120--75188 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
75110 CTTTAATTAA
**
75120 TATTATATAATAGAATTTAATATAAATAATT
1 TATTATATAATAGAACATAATATAAATAATT
*
75151 TATTA-ATAATAGAAACATAATTTAAAT-ATT
1 TATTATATAATAG-AACATAATATAAATAATT
75181 TATTATAT
1 TATTATAT
75189 TTATCATTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 15 0.45
31 18 0.55
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (31 bp):
TATTATATAATAGAACATAATATAAATAATT
Found at i:75613 original size:17 final size:17
Alignment explanation
Indices: 75587--75619 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
75577 ATTAATCAAA
*
75587 ATATATTATAATATTAT
1 ATATAATATAATATTAT
75604 ATATAATATAATATTA
1 ATATAATATAATATTA
75620 GTTAATTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
ATATAATATAATATTAT
Found at i:75670 original size:14 final size:14
Alignment explanation
Indices: 75621--75683 Score: 51
Period size: 14 Copynumber: 4.6 Consensus size: 14
75611 ATAATATTAG
*
75621 TTAATTATATTC-A
1 TTAATTATAATCAA
*
75634 TTAGTTATATAT-AA
1 TTAATTATA-ATCAA
* *
75648 TTAAATATATTCATA
1 TTAATTATAATCA-A
75663 TT-ATTATAATCAA
1 TTAATTATAATCAA
75676 TTAATTAT
1 TTAATTAT
75684 TATTATTTTA
Statistics
Matches: 38, Mismatches: 7, Indels: 9
0.70 0.13 0.17
Matches are distributed among these distances:
13 12 0.32
14 23 0.61
15 3 0.08
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.51
Consensus pattern (14 bp):
TTAATTATAATCAA
Found at i:75787 original size:21 final size:21
Alignment explanation
Indices: 75746--75815 Score: 52
Period size: 24 Copynumber: 3.1 Consensus size: 21
75736 TATGATATTA
*
75746 TAAAAAATAATT-TAATTTAATT
1 TAAAATATAATTATAA--TAATT
*
75768 TAAAATATAATTATAATAATA
1 TAAAATATAATTATAATAATT
* *
75789 TAATTATTAAATATTATAATAATT
1 TAA--AATATA-ATTATAATAATT
75813 TAA
1 TAA
75816 TAGTATTTGT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
21 7 0.18
22 11 0.28
23 7 0.18
24 14 0.36
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
TAAAATATAATTATAATAATT
Found at i:76208 original size:176 final size:176
Alignment explanation
Indices: 75895--76740 Score: 821
Period size: 176 Copynumber: 4.8 Consensus size: 176
75885 CAGCAAACAT
* * * *
75895 ATTTATTTTTTAAATCT-CTTACTAATTTTTGAAATATTATTAAATTAGTATTATTTTAATATGA
1 ATTTATTTTTTAAATCTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTCTGA
* * * * * * *
75959 ATAAGCTTATATGAAAAGAAACAATTGTTTTATGACAAAATAAAGATCATAACAATTTGATATAA
66 ATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAAAAAAGGTCATAACTATTTGAAATAG
* * *
76024 AAAATTGTTCAAATAATCATAAATATTTGAACTGTTCCGATAAATAA
131 ATAATTGTTCAAATAATCATAACTATTTGAACTGTT-CGATAAATAG
** ** * *
76071 ATTTAGCTTTTAAATCT-CTTATTAATTTTCAAAATATTAATAGATCAGTATTATTTTATTCTGA
1 ATTTATTTTTTAAATCTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTCTGA
** * *
76135 ATAATTTTGCATGAATAGAAATAATTGTTTTATGACAAAAAAAAGGTCATAACTATTTGAAATAG
66 ATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAAAAAAGGTCATAACTATTTGAAATAG
* ** ** * * *
76200 ATAATTGTTCAAATGGA-CATGGCTATTTAGATTTATTCAATAAACAG
131 ATAATTGTTCAAAT-AATCATAACTATTT-GAACTGTTCGATAAATAG
** * * * *
76247 ATTTATTTTTTAAATCTCCTACCGACTAA-CTTTCAAAGTATTAATCAATTAGTATTATTTTATT
1 ATTTATTTTTTAAA--T-CTACTTATTAATTTTTGAAA-TATTAATAAATTAGTATTATTTTATT
** * * *
76311 CCAAATAAACTTGTATGAATAGAAACAATTGTTTTA-GAACAAAGCAAAAGATCATAACTATTTG
62 CTGAATAAGCTTGTATGAATAGAAACAATTGTTTTATG-ACAAA-AAAAAGGTCATAACTATTTG
* * * * * *
76375 AAATAAAAAATTGTTCAAATAGTCATAACGATTTGAATTAGCTC-AGTAAATAG
125 AAATAGATAATTGTTCAAATAATCATAACTATTTGAACT-GTTCGA-TAAATAG
* *
76428 ATTTATTTTTAAAATTTTTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATT-
1 ATTTATTTTTTAAA---TCTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTC
* * * * * * *
76492 TCAAATATGCTTGTATGAACATAAACAATTGGTTTGTGACAAAAAAAGGGTCATAACTATTTGAA
63 T-GAATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAAAAAAGGTCATAACTATTTGAA
* * *
76557 ATAGATAATTGTTCAAATAGTCATAACTATTTGAACATGTTC-AGAAA-AC
127 ATAGATAATTGTTCAAATAATCATAACTATTTGAAC-TGTTCGATAAATAG
* *
76606 ATTTATTTTTTAAATTTTTACATATTAATTTTTGAAATATTAATAAATTTA-TATTATTTTATTC
1 ATTTATTTTTTAAA--TCTACTTATTAATTTTTGAAATATTAATAAA-TTAGTATTATTTTATTC
* * * * * *
76670 AGAATAAGCTTGTTTGAATAGAAACAATTGTTTTAGGACAAAACAAAATGTCATAACAACTTGAA
63 TGAATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAA-AAAAGGTCATAACTATTTGAA
76735 ATAGAT
127 ATAGAT
76741 TATTTAAATT
Statistics
Matches: 547, Mismatches: 103, Indels: 38
0.80 0.15 0.06
Matches are distributed among these distances:
176 148 0.27
177 84 0.15
178 41 0.07
179 11 0.02
180 123 0.22
181 131 0.24
182 9 0.02
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.40
Consensus pattern (176 bp):
ATTTATTTTTTAAATCTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTCTGA
ATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAAAAAAGGTCATAACTATTTGAAATAG
ATAATTGTTCAAATAATCATAACTATTTGAACTGTTCGATAAATAG
Found at i:77316 original size:22 final size:22
Alignment explanation
Indices: 77243--77394 Score: 103
Period size: 22 Copynumber: 7.2 Consensus size: 22
77233 TATTCTTATA
*
77243 AATTAATA-TACTTTATTAATAAT
1 AATTAATATTA-TATATTAAT-AT
77266 AGTATTAATTATTA-ATA-TAAT-T
1 A--ATTAA-TATTATATATTAATAT
77288 -ATTAATATTATATATTAATAT
1 AATTAATATTATATATTAATAT
77309 AATTAATATTATATATTAATAT
1 AATTAATATTATATATTAATAT
* *
77331 AATT--TA-TCTA-ATTATTAT
1 AATTAATATTATATATTAATAT
* *
77349 AA-TAATATTAT-TCAATATTA-
1 AATTAATATTATAT-ATTAATAT
* *
77369 AATTAATATTATATGTAAATAT
1 AATTAATATTATATATTAATAT
77391 AATT
1 AATT
77395 TTGTTAAATT
Statistics
Matches: 104, Mismatches: 9, Indels: 33
0.71 0.06 0.23
Matches are distributed among these distances:
17 1 0.01
18 14 0.13
19 13 0.12
20 10 0.10
21 19 0.18
22 31 0.30
23 1 0.01
24 4 0.04
25 7 0.07
26 2 0.02
27 2 0.02
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.49
Consensus pattern (22 bp):
AATTAATATTATATATTAATAT
Found at i:77332 original size:47 final size:48
Alignment explanation
Indices: 77268--77377 Score: 140
Period size: 47 Copynumber: 2.3 Consensus size: 48
77258 TTAATAATAG
77268 TATTAATTATTAATATAA-TTAT-TAA-TATTATATATTAATATAATT-AA
1 TATTAA-TATTAATATAATTTATCTAATTATTATA-A-TAATATAATTCAA
*
77315 TATTATATATTAATATAATTTATCTAATTATTATAATAATATTATTCAA
1 TATTA-ATATTAATATAATTTATCTAATTATTATAATAATATAATTCAA
77364 TATTAA-ATTAATAT
1 TATTAATATTAATAT
77378 TATATGTAAA
Statistics
Matches: 57, Mismatches: 1, Indels: 10
0.84 0.01 0.15
Matches are distributed among these distances:
47 24 0.42
48 15 0.26
49 11 0.19
50 7 0.12
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (48 bp):
TATTAATATTAATATAATTTATCTAATTATTATAATAATATAATTCAA
Found at i:77465 original size:16 final size:16
Alignment explanation
Indices: 77442--77518 Score: 79
Period size: 16 Copynumber: 4.8 Consensus size: 16
77432 AGATTATAAA
77442 AATATTTATAATAATT
1 AATATTTATAATAATT
*
77458 ACTATTTATAA-AATT
1 AATATTTATAATAATT
77473 AAT-TATTATAATAATAT
1 AATAT-TTATAATAAT-T
*
77490 AATAATTTATTA-AATT
1 AAT-ATTTATAATAATT
77506 AATATTTTATAAT
1 AATA-TTTATAAT
77519 TAGATATATT
Statistics
Matches: 50, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
14 1 0.02
15 13 0.26
16 23 0.46
17 7 0.14
18 5 0.10
19 1 0.02
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (16 bp):
AATATTTATAATAATT
Found at i:77487 original size:34 final size:34
Alignment explanation
Indices: 77442--77518 Score: 99
Period size: 33 Copynumber: 2.4 Consensus size: 34
77432 AGATTATAAA
*
77442 AATAT-TTATAATAAT-TACT-ATTTATAAAATT
1 AATATATTATAATAATATAATAATTTATAAAATT
*
77473 AAT-TATTATAATAATATAATAATTTATTAAATT
1 AATATATTATAATAATATAATAATTTATAAAATT
*
77506 AATATTTTATAAT
1 AATATATTATAAT
77519 TAGATATATT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
30 1 0.03
31 13 0.33
32 3 0.08
33 14 0.36
34 8 0.21
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (34 bp):
AATATATTATAATAATATAATAATTTATAAAATT
Found at i:77619 original size:6 final size:6
Alignment explanation
Indices: 77604--77683 Score: 50
Period size: 6 Copynumber: 14.2 Consensus size: 6
77594 ATTAATCAAG
* *
77604 TTATAT TTATAA TTATAGA TT-TAA -TATAA TTA-AA TAACT-A TTAATAA
1 TTATAA TTATAA TTATA-A TTATAA TTATAA TTATAA TTA-TAA TT-ATAA
*
77651 TTATAA -TA-AA -TATAA TTATAA CT-TAA TTATAA T
1 TTATAA TTATAA TTATAA TTATAA TTATAA TTATAA T
77684 ATTAGTAAAC
Statistics
Matches: 59, Mismatches: 5, Indels: 20
0.70 0.06 0.24
Matches are distributed among these distances:
4 5 0.08
5 16 0.27
6 31 0.53
7 7 0.12
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (6 bp):
TTATAA
Found at i:77665 original size:15 final size:15
Alignment explanation
Indices: 77611--77671 Score: 52
Period size: 15 Copynumber: 3.7 Consensus size: 15
77601 AAGTTATATT
*
77611 TATAATTATAGATTTAA
1 TATAATTATA-A-TAAA
77628 TATAATTA-AATAACTA
1 TATAATTATAATAA--A
77644 TTAATAATTATAATAAA
1 -T-ATAATTATAATAAA
77661 TATAATTATAA
1 TATAATTATAA
77672 CTTAATTATA
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
14 2 0.05
15 11 0.29
16 3 0.08
17 10 0.26
18 7 0.18
19 5 0.13
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (15 bp):
TATAATTATAATAAA
Found at i:77676 original size:29 final size:33
Alignment explanation
Indices: 77612--77677 Score: 77
Period size: 33 Copynumber: 2.1 Consensus size: 33
77602 AGTTATATTT
*
77612 ATAATTATAGATTTAATATAATTAAATAACTATTA
1 ATAATTATAGATTAAATATAATT-AATAAC-ATTA
77647 ATAATTATA-A-TAAATATAATT-ATAAC-TTA
1 ATAATTATAGATTAAATATAATTAATAACATTA
77676 AT
1 AT
77678 TATAATATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
29 5 0.17
31 5 0.17
33 10 0.33
34 1 0.03
35 9 0.30
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (33 bp):
ATAATTATAGATTAAATATAATTAATAACATTA
Found at i:77771 original size:10 final size:9
Alignment explanation
Indices: 77754--77844 Score: 64
Period size: 10 Copynumber: 9.8 Consensus size: 9
77744 TTTCTAATAT
77754 TAATATTTA
1 TAATATTTA
77763 TAATGATTTA
1 TAAT-ATTTA
77773 TAAATTATTTA
1 T-AA-TATTTA
77784 TAACTATTTA
1 TAA-TATTTA
77794 TAAGTTATTTA
1 TAA--TATTTA
*
77805 AAATA-TTA
1 TAATATTTA
*
77813 TAATA-GTA
1 TAATATTTA
*
77821 TTA-ATTTA
1 TAATATTTA
77829 T-ATATTATA
1 TAATATT-TA
77838 TAATATT
1 TAATATT
77845 ATTGTAATTA
Statistics
Matches: 67, Mismatches: 7, Indels: 15
0.75 0.08 0.17
Matches are distributed among these distances:
7 2 0.03
8 17 0.25
9 9 0.13
10 22 0.33
11 16 0.24
12 1 0.01
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (9 bp):
TAATATTTA
Found at i:77782 original size:21 final size:21
Alignment explanation
Indices: 77757--77804 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
77747 CTAATATTAA
77757 TATTTATAA-TGATTTATAAAT
1 TATTTATAACT-ATTTATAAAT
*
77778 TATTTATAACTATTTATAAGT
1 TATTTATAACTATTTATAAAT
77799 TATTTA
1 TATTTA
77805 AAATATTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 24 0.96
22 1 0.04
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (21 bp):
TATTTATAACTATTTATAAAT
Found at i:78371 original size:10 final size:10
Alignment explanation
Indices: 78344--78409 Score: 62
Period size: 10 Copynumber: 6.2 Consensus size: 10
78334 AATCAAACAA
78344 TATATAAATAT
1 TATATAAAT-T
78355 TAT-TAAATT
1 TATATAAATT
78364 TATATAAATT
1 TATATAAATT
* *
78374 TAAATCAATT
1 TATATAAATT
78384 TATATAATTCTATT
1 TATATAA----ATT
78398 TATATAAATT
1 TATATAAATT
78408 TA
1 TA
78410 ATTTAAAATT
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
9 4 0.09
10 29 0.63
11 3 0.07
14 10 0.22
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (10 bp):
TATATAAATT
Found at i:78574 original size:21 final size:19
Alignment explanation
Indices: 78548--78590 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
78538 TAATATTGAA
78548 TAATAATAATAATATCATTAT
1 TAATAATAA-AA-ATCATTAT
*
78569 TAATAATAAAAATGATTAT
1 TAATAATAAAAATCATTAT
78588 TAA
1 TAA
78591 ATTTTGAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 10 0.48
20 2 0.10
21 9 0.43
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (19 bp):
TAATAATAAAAATCATTAT
Found at i:79301 original size:20 final size:20
Alignment explanation
Indices: 79276--79332 Score: 53
Period size: 20 Copynumber: 2.8 Consensus size: 20
79266 AAATAATATA
79276 ATATATATTAATATTAAATT
1 ATATATATTAATATTAAATT
* *
79296 ATATAT-TATATTATTTAATT
1 ATATATAT-TAATATTAAATT
* *
79316 AAATTTTATTAATATTA
1 ATA-TATATTAATATTA
79333 TGTTATTTAA
Statistics
Matches: 28, Mismatches: 6, Indels: 5
0.72 0.15 0.13
Matches are distributed among these distances:
19 1 0.04
20 18 0.64
21 8 0.29
22 1 0.04
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
ATATATATTAATATTAAATT
Found at i:79342 original size:25 final size:25
Alignment explanation
Indices: 79266--79344 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
79256 TAACAATTAC
* * *
79266 AAATAATATAATATA-TATTAATATT
1 AAATTATATATTATATTATTTA-ATT
79291 AAATTATATATTATATTATTTAATT
1 AAATTATATATTATATTATTTAATT
*
79316 AAATT-T-TATTAATATTATGTTATTT
1 AAATTATATATT-ATATTAT-TTAATT
79341 AAAT
1 AAAT
79345 ATTTTAAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
23 4 0.09
24 8 0.17
25 30 0.64
26 5 0.11
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (25 bp):
AAATTATATATTATATTATTTAATT
Found at i:79351 original size:24 final size:24
Alignment explanation
Indices: 79303--79362 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
79293 ATTATATATT
*
79303 ATATTATTTAATTAAATTTTATTA
1 ATATTATTTAATTAAATATTATTA
*
79327 ATATTATGTTATTTAAATATT-TTA
1 ATATTAT-TTAATTAAATATTATTA
* *
79351 AAATTAATTAAT
1 ATATTATTTAAT
79363 GATTGATCTC
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
23 4 0.13
24 15 0.50
25 11 0.37
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (24 bp):
ATATTATTTAATTAAATATTATTA
Found at i:79404 original size:19 final size:19
Alignment explanation
Indices: 79380--79438 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
79370 CTCTACCATT
*
79380 TAATTATTTTTAATATTAA
1 TAATTATTATTAATATTAA
*
79399 TAATTATTATAAATATTTAA
1 TAATTATTATTAATA-TTAA
* * *
79419 AAATTAATATTATTATTAA
1 TAATTATTATTAATATTAA
79438 T
1 T
79439 TAGTATAATA
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TAATTATTATTAATATTAA
Found at i:79974 original size:16 final size:16
Alignment explanation
Indices: 79953--79993 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
79943 TATCTATTTT
79953 AATATTATTATACTAA
1 AATATTATTATACTAA
* * *
79969 AATATTTTTATATTAT
1 AATATTATTATACTAA
79985 AATATTATT
1 AATATTATT
79994 TAATTAATAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (16 bp):
AATATTATTATACTAA
Found at i:79999 original size:16 final size:16
Alignment explanation
Indices: 79947--79999 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
79937 AACAATTATC
* *
79947 TATTTTAATATTATTA
1 TATTATAATATTTTTA
* *
79963 TACTAAAATATTTTTA
1 TATTATAATATTTTTA
79979 TATTATAATATTATTTA
1 TATTATAATATT-TTTA
79996 -ATTA
1 TATTA
80000 ATAAAATAGA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
16 26 0.87
17 4 0.13
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (16 bp):
TATTATAATATTTTTA
Found at i:80182 original size:22 final size:22
Alignment explanation
Indices: 80150--80206 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
80140 TATAAATTTA
* *
80150 ATTAATAAATTATTATTAATACT
1 ATTAATTAATTAATATTAATA-T
*
80173 A-TAATTAATTAATATTTATAT
1 ATTAATTAATTAATATTAATAT
80194 ATTAATTAATTAA
1 ATTAATTAATTAA
80207 CTAATTTGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 2 0.07
22 27 0.90
23 1 0.03
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (22 bp):
ATTAATTAATTAATATTAATAT
Found at i:80197 original size:18 final size:17
Alignment explanation
Indices: 80147--80203 Score: 59
Period size: 18 Copynumber: 3.5 Consensus size: 17
80137 AAGTATAAAT
*
80147 TTAATTAATA-AAT-TA
1 TTAATTAATACTATATA
80162 TT-ATTAATACTATA-A
1 TTAATTAATACTATATA
*
80177 TTAATTAATATTTATATA
1 TTAATTAATA-CTATATA
80195 TTAATTAAT
1 TTAATTAAT
80204 TAACTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
14 7 0.20
15 7 0.20
16 7 0.20
17 4 0.11
18 10 0.29
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (17 bp):
TTAATTAATACTATATA
Found at i:80221 original size:22 final size:22
Alignment explanation
Indices: 80174--80223 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
80164 ATTAATACTA
* *
80174 TAATTAATTAATATTTATATAT
1 TAATTAATTAATAATTATATAC
*
80196 TAATTAATTAACTAATT-TGTAC
1 TAATTAATTAA-TAATTATATAC
80218 TAATTA
1 TAATTA
80224 CAAATTATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.50
Consensus pattern (22 bp):
TAATTAATTAATAATTATATAC
Found at i:80323 original size:24 final size:24
Alignment explanation
Indices: 80296--80352 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 24
80286 TTTATTAATA
80296 ATAATTATTAAAAATTAT-ATATTT
1 ATAATTATT-AAAATTATAATATTT
*
80320 ATAATTTATTATAATTATAAATATTT
1 ATAA-TTATTAAAATTAT-AATATTT
80346 A-AATTAT
1 ATAATTAT
80353 AGAATATAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
24 15 0.52
25 7 0.24
26 7 0.24
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
ATAATTATTAAAATTATAATATTT
Found at i:80329 original size:38 final size:35
Alignment explanation
Indices: 80286--80377 Score: 85
Period size: 38 Copynumber: 2.5 Consensus size: 35
80276 CTTGCATTGG
* *
80286 TTTATTAATAATAATTATTAAAAATTATATATTTATAA
1 TTTATTAAT-ATAATTATT-AAAATTATAGA-ATATAA
* *
80324 TTTATTATAATTATAAATATTTAAATTATAGAATATAA
1 TTTA-T-TAA-TATAATTATTAAAATTATAGAATATAA
*
80362 TTTATTACTATAATTA
1 TTTATTAATATAATTA
80378 AATATTATAA
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
35 7 0.16
36 2 0.04
37 1 0.02
38 13 0.29
39 10 0.22
40 11 0.24
41 1 0.02
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (35 bp):
TTTATTAATATAATTATTAAAATTATAGAATATAA
Found at i:80679 original size:27 final size:27
Alignment explanation
Indices: 80649--80718 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 27
80639 GAATTAAAAC
80649 AATTATAGTAATAATATATATTAT-TTT
1 AATTATA-TAATAATATATATTATATTT
* *
80676 AATTATA-ATTAAAATATATTATATTT
1 AATTATATAATAATATATATTATATTT
*
80702 AACTATA-ATATAATATA
1 AATTATATA-ATAATATA
80719 CATGTCAAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 13 0.36
26 10 0.28
27 13 0.36
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (27 bp):
AATTATATAATAATATATATTATATTT
Found at i:80716 original size:25 final size:25
Alignment explanation
Indices: 80664--80718 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
80654 TAGTAATAAT
*
80664 ATATATTATTTTAATTATAATTAAA
1 ATATATTATTTTAACTATAATTAAA
*
80689 ATATATTATATTTAACTATAA-TATA
1 ATATATTAT-TTTAACTATAATTAAA
80714 ATATA
1 ATATA
80719 CATGTCAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 17 0.63
26 10 0.37
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (25 bp):
ATATATTATTTTAACTATAATTAAA
Found at i:80835 original size:16 final size:15
Alignment explanation
Indices: 80816--80880 Score: 64
Period size: 16 Copynumber: 4.3 Consensus size: 15
80806 TATATTAATA
80816 ATATTATTAATTATTT
1 ATATTA-TAATTATTT
*
80832 ATATTATAATTATATA
1 ATATTATAATTAT-TT
80848 ATATTATAA-T-TTT
1 ATATTATAATTATTT
80861 ACTA-TATTAATTATTT
1 A-TATTA-TAATTATTT
80877 ATAT
1 ATAT
80881 ATTGTTAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
13 4 0.10
14 6 0.15
15 11 0.27
16 20 0.49
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (15 bp):
ATATTATAATTATTT
Found at i:81323 original size:29 final size:29
Alignment explanation
Indices: 81278--81333 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 29
81268 TAAATTATAG
81278 TATAATAATATTAATTTAT-TATATATTAT
1 TATAATAATATTAATTTATATA-ATATTAT
*
81307 TATAATAAT-TATGATTTATATAATATT
1 TATAATAATAT-TAATTTATATAATATT
81334 TAAGACTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 1 0.04
29 21 0.88
30 2 0.08
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.54
Consensus pattern (29 bp):
TATAATAATATTAATTTATATAATATTAT
Found at i:81325 original size:26 final size:26
Alignment explanation
Indices: 81296--81350 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
81286 TATTAATTTA
* *
81296 TTATATATTATTATAATAAT-TATGAT
1 TTATATAATATT-TAAGAATATATGAT
*
81322 TTATATAATATTTAAGACTATATGAT
1 TTATATAATATTTAAGAATATATGAT
81348 TTA
1 TTA
81351 GTAATCAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (26 bp):
TTATATAATATTTAAGAATATATGAT
Found at i:81402 original size:28 final size:28
Alignment explanation
Indices: 81368--81434 Score: 86
Period size: 28 Copynumber: 2.4 Consensus size: 28
81358 AATATATATA
81368 AAATATATATATATGAATTATT-AG-TAAT
1 AAATATATATATAT-AATTATTAAGCT-AT
81396 AAATATATAATATATAATTATTAAGCTAT
1 AAATATAT-ATATATAATTATTAAGCTAT
81425 AAAT-TATATA
1 AAATATATATA
81435 CTATTTATAA
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
27 3 0.08
28 18 0.50
29 14 0.39
30 1 0.03
ACGTcount: A:0.52, C:0.01, G:0.04, T:0.42
Consensus pattern (28 bp):
AAATATATATATATAATTATTAAGCTAT
Found at i:81580 original size:9 final size:10
Alignment explanation
Indices: 81567--81622 Score: 50
Period size: 9 Copynumber: 5.9 Consensus size: 10
81557 AAATCAATCA
81567 AATATTAATT
1 AATATTAATT
81577 -ATATT-ATT
1 AATATTAATT
81585 AATATT-ATT
1 AATATTAATT
81594 AAT-TTATATAT
1 AATATTA-AT-T
81605 AATATT-ATT
1 AATATTAATT
*
81614 ATTATTAAT
1 AATATTAAT
81623 AATTGTTATT
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
8 5 0.13
9 22 0.56
10 6 0.15
11 4 0.10
12 2 0.05
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (10 bp):
AATATTAATT
Found at i:82153 original size:22 final size:21
Alignment explanation
Indices: 82123--82164 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
82113 TTTGTACTTT
82123 TATTATAATATATAAT-TTAAC
1 TATTATAATAT-TAATATTAAC
82144 TATTAATAATATTAATATTAA
1 TATT-ATAATATTAATATTAA
82165 TAACTATTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (21 bp):
TATTATAATATTAATATTAAC
Found at i:82162 original size:15 final size:16
Alignment explanation
Indices: 82134--82172 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
82124 ATTATAATAT
82134 ATAAT-TTAACTATTA
1 ATAATATTAACTATTA
82149 ATAATATTAA-TATTA
1 ATAATATTAACTATTA
82164 ATAACTATT
1 ATAA-TATT
82173 TCAAATAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 14 0.64
16 8 0.36
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (16 bp):
ATAATATTAACTATTA
Found at i:82308 original size:11 final size:11
Alignment explanation
Indices: 82292--82325 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
82282 ATTAATAAAT
82292 TAATTTAATTA
1 TAATTTAATTA
82303 TAATTTAAATTA
1 TAATTT-AATTA
82315 -AATTTAATTA
1 TAATTTAATTA
82325 T
1 T
82326 TAAATATTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
10 5 0.24
11 11 0.52
12 5 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (11 bp):
TAATTTAATTA
Found at i:83364 original size:32 final size:33
Alignment explanation
Indices: 83322--83386 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 33
83312 TCAGTTAAAT
83322 TAGTTAAATTAATAATTA-AAAATATTAATTATA
1 TAGTTAAATT-ATAATTATAAAATATTAATTATA
*
83355 TAGTT-AATTATAATTATATAATATTAATTATA
1 TAGTTAAATTATAATTATAAAATATTAATTATA
83387 ATGATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 7 0.23
32 18 0.60
33 5 0.17
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (33 bp):
TAGTTAAATTATAATTATAAAATATTAATTATA
Found at i:83388 original size:12 final size:12
Alignment explanation
Indices: 83342--83398 Score: 54
Period size: 12 Copynumber: 5.1 Consensus size: 12
83332 AATAATTAAA
83342 AATATTAATTAT
1 AATATTAATTAT
83354 -ATAGTTAATTAT
1 AATA-TTAATTAT
83366 -A-ATT-A-TAT
1 AATATTAATTAT
83374 AATATTAATTAT
1 AATATTAATTAT
83386 AATGA-TAATTAT
1 AAT-ATTAATTAT
83398 A
1 A
83399 CTAAATATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
8 3 0.08
9 2 0.05
10 5 0.13
11 5 0.13
12 23 0.59
13 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (12 bp):
AATATTAATTAT
Found at i:83395 original size:32 final size:31
Alignment explanation
Indices: 83328--83398 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 31
83318 AAATTAGTTA
*
83328 AATTAATAATTAAAAATATTAATTATATAGTT
1 AATT-ATAATTAAAAATATTAATTATATAGAT
*
83360 AATTATAATTATATAATATTAATTATA-ATGAT
1 AATTATAATTA-AAAATATTAATTATATA-GAT
83392 AATTATA
1 AATTATA
83399 CTAAATATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 8 0.23
32 27 0.77
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (31 bp):
AATTATAATTAAAAATATTAATTATATAGAT
Found at i:83867 original size:34 final size:32
Alignment explanation
Indices: 83829--83916 Score: 101
Period size: 34 Copynumber: 2.7 Consensus size: 32
83819 AGATATAGTA
83829 ATATTATATTATTATTAATTATAATAATTAATTT
1 ATATTATATTATTATTAATTATAATAATT-A-TT
*
83863 ATATTAATTTTATTATTAA-TATAATAATTATT
1 ATATT-ATATTATTATTAATTATAATAATTATT
*
83895 A-ATT-TATTATAATATAATTATA
1 ATATTATATTATTAT-TAATTATA
83917 TTATTAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
29 7 0.15
30 3 0.06
31 7 0.15
32 3 0.06
33 1 0.02
34 15 0.31
35 12 0.25
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (32 bp):
ATATTATATTATTATTAATTATAATAATTATT
Found at i:83895 original size:27 final size:27
Alignment explanation
Indices: 83831--83923 Score: 106
Period size: 27 Copynumber: 3.5 Consensus size: 27
83821 ATATAGTAAT
*
83831 ATTATATTATT-ATTAATTATAATAATTA
1 ATTATATTATTAATTTATTATAAT-A-TA
83859 ATT-TA-TATTAATTTTATTATTAATATA
1 ATTATATTATTAA-TTTATTA-TAATATA
83886 A-TA-ATTATTAATTTATTATAATATA
1 ATTATATTATTAATTTATTATAATATA
83911 ATTATATTATTAA
1 ATTATATTATTAA
83924 AATAATACAA
Statistics
Matches: 57, Mismatches: 1, Indels: 15
0.78 0.01 0.21
Matches are distributed among these distances:
25 8 0.14
26 15 0.26
27 20 0.35
28 10 0.18
29 4 0.07
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (27 bp):
ATTATATTATTAATTTATTATAATATA
Found at i:83914 original size:22 final size:22
Alignment explanation
Indices: 83834--83975 Score: 62
Period size: 22 Copynumber: 6.2 Consensus size: 22
83824 TAGTAATATT
* *
83834 ATATTATTATTAA-TTATAATA
1 ATATAATTATTAATTTATTATA
83855 AT-TAATTTATATTAATTTTATTATTAA
1 ATATAA--T-TATTAA-TTTATTA-T-A
83882 TATAATAATTATTAATTTATTATA
1 -AT-ATAATTATTAATTTATTATA
* **
83906 ATATAATTA-TATTATTAAAATA
1 ATATAATTATTAAT-TTATTATA
* *
83928 ATACAACTA-TAAGTTTATTATA
1 ATATAATTATTAA-TTTATTATA
**
83950 ATAATAAAAATTAA-TTATTA-A
1 AT-ATAATTATTAATTTATTATA
83971 ATATA
1 ATATA
83976 GTAATAAAAT
Statistics
Matches: 94, Mismatches: 13, Indels: 29
0.69 0.10 0.21
Matches are distributed among these distances:
20 5 0.05
21 8 0.09
22 37 0.39
23 13 0.14
24 4 0.04
25 6 0.06
26 8 0.09
27 7 0.07
28 3 0.03
30 3 0.03
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (22 bp):
ATATAATTATTAATTTATTATA
Found at i:83915 original size:37 final size:35
Alignment explanation
Indices: 83829--83929 Score: 107
Period size: 37 Copynumber: 2.8 Consensus size: 35
83819 AGATATAGTA
83829 ATATT-ATATTATTATTAATTATAATAATTAATTT
1 ATATTAATATTATTATTAATTATAATAATTAATTT
* *
83863 ATATTAATTTTATTATTAATATAATAATTATTAATTT
1 ATATTAATATTATTATTAAT-T-ATAATAATTAATTT
* * *
83900 AT-TATAATATAATTATATTATTAAAATAAT
1 ATAT-TAATATTATTAT-TAATTATAATAAT
83930 ACAACTATAA
Statistics
Matches: 55, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
34 5 0.09
35 13 0.24
36 8 0.15
37 26 0.47
38 3 0.05
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (35 bp):
ATATTAATATTATTATTAATTATAATAATTAATTT
Found at i:83954 original size:42 final size:40
Alignment explanation
Indices: 83827--83954 Score: 106
Period size: 42 Copynumber: 3.2 Consensus size: 40
83817 TAAGATATAG
* *
83827 TAAT-ATTATATTATTATTAATTATAA-TAATTAATTTA-TA
1 TAATAATTATATTATTA-AAATAATAACT-ATTAATTTATTA
* * *
83866 T--TAATTTTATTATTAATATAATAATTATTAATTTATTA
1 TAATAATTATATTATTAAAATAATAACTATTAATTTATTA
83904 TAATATAATTATATTATTAAAATAATACAACTA-TAAGTTTATTA
1 T-A-ATAATTATATTATTAAAATAAT--AACTATTAA-TTTATTA
83948 TAATAAT
1 TAATAAT
83955 AAAAATTAAT
Statistics
Matches: 72, Mismatches: 7, Indels: 17
0.75 0.07 0.18
Matches are distributed among these distances:
37 16 0.22
38 15 0.21
39 1 0.01
42 24 0.33
43 4 0.06
44 12 0.17
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.51
Consensus pattern (40 bp):
TAATAATTATATTATTAAAATAATAACTATTAATTTATTA
Found at i:84037 original size:14 final size:14
Alignment explanation
Indices: 84018--84044 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
84008 AATACATATT
84018 ATAATTTAATTATA
1 ATAATTTAATTATA
84032 ATAATTTAATTAT
1 ATAATTTAATTAT
84045 GTTATAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
ATAATTTAATTATA
Found at i:84099 original size:12 final size:12
Alignment explanation
Indices: 84082--84113 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
84072 AATTATGTTA
84082 TTATATAATAAT
1 TTATATAATAAT
84094 TTATATAATAAT
1 TTATATAATAAT
84106 TTA-ATAAT
1 TTATATAAT
84114 TATAATTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.25
12 15 0.75
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
TTATATAATAAT
Found at i:84527 original size:181 final size:178
Alignment explanation
Indices: 84163--84546 Score: 449
Period size: 179 Copynumber: 2.1 Consensus size: 178
84153 CTATTAGAAT
* * * * *
84163 AATTATCTATTTCAAATTATTTTGACCTTTTATTTAGTCAAAAATAATTGCTTCAACTCATACAT
1 AATTATCTATTTCAAATCATTATGACCTTATATTTAGTCAAAAATAATTGCTTCAACTCATAAAA
84228 GCTTATTCAAAATAAAATAATACTAATTTATTAACATTTAGAAAATTATTAAGTAAGAAATTAGA
66 GCTTATTCAAAATAAAATAATACTAATTTATTAACATTTAGAAAATTATTAAGTAAGAAATTAGA
* * *
84293 AAAAAATCTATTTACCGAACAAGTTCAAATATTTTTGACTATTTAAAC
131 AAAAAATCTATTTACCGAACAAGCTCAAATAATTTTGACCATTTAAAC
* * * *
84341 AATTATCTATTTAAAATCATTATGACCTTATATCTTA-TCATAAATTAATTGTTTCAATTCATAA
1 AATTATCTATTTCAAATCATTATGACCTTATAT-TTAGTCA-AAAATAATTGCTTCAACTCATAA
* * * * *
84405 AAGCTTA-TCTTAAATAAAATAATATTACTTTATTAATATTATA-AAAATTGA-TAAGTTAGAGA
64 AAGCTTATTC-AAAATAAAATAATACTAATTTATTAACATT-TAGAAAATT-ATTAAGTAAGA-A
* * *
84467 TTTA-AAACATAAATC-AGTTTATCGAATC-AGCTCAAATAATTTTGGCCATTTAAAC
125 ATTAGAAA-A-AAATCTA-TTTACCGAA-CAAGCTCAAATAATTTTGACCATTTAAAC
84522 AATTATCTATTTCAAATCATTATGA
1 AATTATCTATTTCAAATCATTATGA
84547 ATTTTTGTTT
Statistics
Matches: 175, Mismatches: 21, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
178 34 0.19
179 71 0.41
180 9 0.05
181 60 0.34
182 1 0.01
ACGTcount: A:0.43, C:0.11, G:0.06, T:0.40
Consensus pattern (178 bp):
AATTATCTATTTCAAATCATTATGACCTTATATTTAGTCAAAAATAATTGCTTCAACTCATAAAA
GCTTATTCAAAATAAAATAATACTAATTTATTAACATTTAGAAAATTATTAAGTAAGAAATTAGA
AAAAAATCTATTTACCGAACAAGCTCAAATAATTTTGACCATTTAAAC
Found at i:84565 original size:181 final size:179
Alignment explanation
Indices: 84163--84580 Score: 463
Period size: 181 Copynumber: 2.3 Consensus size: 179
84153 CTATTAGAAT
* * * * * *
84163 AATTATCTATTTCAAATTATTTTGACCTTTTATTTAGTCA-AAAATAATTGCTTCAACTCATACA
1 AATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCATAAAATAATTGTTTCAATTCATAAA
*
84227 TGCTTATTCAAAATAAAATAATACTAATTTATTAACATTTAGAAAATTATTAAGTAAGAAATTAG
66 AGCTTATTCAAAATAAAATAATACTAATTTATTAACATTTAGAAAATTATTAAGTAAGAAATTAG
* * *
84292 AAAAAAATCTATTTACCGAACAAGTTCAAATATTTTTGACTATTTAAAC
131 AAAAAAATCTATTTACCGAACAAGCTCAAATAATTTTGACCATTTAAAC
* * * * *
84341 AATTATCTATTTAAAATCATTATGACCTTATATCTTATCATAAATTAATTGTTTCAATTCATAAA
1 AATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCATAAAATAATTGTTTCAATTCATAAA
* * * * * *
84406 AGCTTA-TCTTAAATAAAATAATATTACTTTATTAATATTATA-AAAATTGA-TAAGTTAGAGAT
66 AGCTTATTC-AAAATAAAATAATACTAATTTATTAACATT-TAGAAAATT-ATTAAGTAAGA-AA
* *
84468 TTA-AAACATAAATC-AGTTTATCGAATC-AGCTCAAATAATTTTGGCCATTTAAAC
127 TTAGAAA-A-AAATCTA-TTTACCGAA-CAAGCTCAAATAATTTTGACCATTTAAAC
** * * *
84522 AATTATCTATTTCAAATCATTATGAATTTTTGTTTTGTCATAAAACAATTGTTTAAATT
1 AATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCATAAAATAATTGTTTCAATT
84581 ATTTTATTTA
Statistics
Matches: 198, Mismatches: 33, Indels: 15
0.80 0.13 0.06
Matches are distributed among these distances:
178 35 0.18
179 68 0.34
180 9 0.05
181 85 0.43
182 1 0.01
ACGTcount: A:0.42, C:0.11, G:0.06, T:0.41
Consensus pattern (179 bp):
AATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCATAAAATAATTGTTTCAATTCATAAA
AGCTTATTCAAAATAAAATAATACTAATTTATTAACATTTAGAAAATTATTAAGTAAGAAATTAG
AAAAAAATCTATTTACCGAACAAGCTCAAATAATTTTGACCATTTAAAC
Found at i:84607 original size:30 final size:29
Alignment explanation
Indices: 84573--84642 Score: 72
Period size: 30 Copynumber: 2.3 Consensus size: 29
84563 AAAACAATTG
* *
84573 TTTAAATTATT-TTATTTAAATAATAAGTAA
1 TTTAAATTATTATTAATTAAACAAT-A-TAA
84603 TTTAAATAATATTATTAATTAAACAATATAA
1 TTTAAAT--TATTATTAATTAAACAATATAA
84634 -TTAAATTAT
1 TTTAAATTAT
84643 AATATTAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
28 3 0.09
30 13 0.37
31 3 0.09
32 5 0.14
33 11 0.31
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (29 bp):
TTTAAATTATTATTAATTAAACAATATAA
Found at i:84630 original size:17 final size:17
Alignment explanation
Indices: 84604--84637 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
84594 AATAAGTAAT
* *
84604 TTAAATAATATTATTAA
1 TTAAACAATATAATTAA
84621 TTAAACAATATAATTAA
1 TTAAACAATATAATTAA
84638 ATTATAATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (17 bp):
TTAAACAATATAATTAA
Done.