Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168501.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_98, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 90112
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
File 2 of 3
Found at i:32819 original size:12 final size:12
Alignment explanation
Indices: 32801--32832 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
32791 TACATAAATT
32801 ATAATTATTTTA
1 ATAATTATTTTA
*
32813 TTAATTATTTTA
1 ATAATTATTTTA
32825 ATAATTAT
1 ATAATTAT
32833 AACTTAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
ATAATTATTTTA
Found at i:32960 original size:13 final size:13
Alignment explanation
Indices: 32942--32982 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
32932 TTGATTGTAT
*
32942 TTATTAATTATAC
1 TTATTAATTATAA
32955 TTATTAATTATAA
1 TTATTAATTATAA
32968 TTA-TAATTATTAA
1 TTATTAATTA-TAA
32981 TT
1 TT
32983 TAAAAATTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
12 6 0.23
13 20 0.77
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (13 bp):
TTATTAATTATAA
Found at i:32968 original size:19 final size:19
Alignment explanation
Indices: 32946--32982 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
32936 TTGTATTTAT
*
32946 TAATTATACTTATTAATTA
1 TAATTATAATTATTAATTA
32965 TAATTATAATTATTAATT
1 TAATTATAATTATTAATT
32983 TAAAAATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (19 bp):
TAATTATAATTATTAATTA
Found at i:33101 original size:28 final size:29
Alignment explanation
Indices: 33021--33116 Score: 90
Period size: 28 Copynumber: 3.3 Consensus size: 29
33011 TTATAATCCA
* *
33021 ATTAAAATATTATGATTATATTATAATTCATT
1 ATTAATATATAAT-ATTATA-TATAATT-ATT
* *
33053 -TTAAGA-ATAATATTATTTATAATTATT
1 ATTAATATATAATATTATATATAATTATT
* *
33080 ATTAATATATAATATTA-ATATAAATGTT
1 ATTAATATATAATATTATATATAATTATT
33108 ATTAATATA
1 ATTAATATA
33117 ACTTAAATTA
Statistics
Matches: 55, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
27 3 0.05
28 29 0.53
29 14 0.25
30 4 0.07
31 5 0.09
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.49
Consensus pattern (29 bp):
ATTAATATATAATATTATATATAATTATT
Found at i:33926 original size:18 final size:16
Alignment explanation
Indices: 33885--33930 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 16
33875 TATATTAAAA
*
33885 ATTATATATATAGTTTT
1 ATTATAT-TATAGTTTG
33902 ATTATATTATAGTTTG
1 ATTATATTATAGTTTG
33918 ATTTAATATTATA
1 A-TT-ATATTATA
33931 TAACTTTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 9 0.35
17 9 0.35
18 8 0.31
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.57
Consensus pattern (16 bp):
ATTATATTATAGTTTG
Found at i:34172 original size:14 final size:14
Alignment explanation
Indices: 34119--34184 Score: 50
Period size: 14 Copynumber: 4.8 Consensus size: 14
34109 TATAAAATTT
34119 ATTTACTTAA-TATA
1 ATTTA-TTAATTATA
*
34133 ATTTAATAA-T-TA
1 ATTTATTAATTATA
*
34145 ATTTA-TACTATATA
1 ATTTATTAAT-TATA
34159 ATTTATTAATTATAA
1 ATTTATTAATTAT-A
*
34174 ATGTATTAATT
1 ATTTATTAATT
34185 TTTATCTATA
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
11 2 0.05
12 7 0.16
13 5 0.12
14 15 0.35
15 14 0.33
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.52
Consensus pattern (14 bp):
ATTTATTAATTATA
Found at i:34222 original size:35 final size:36
Alignment explanation
Indices: 34141--34210 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 36
34131 TAATTTAATA
* *
34141 ATTAATTTATA-CTATATAATTTATTAATTATAAATGT
1 ATTAATTTTTATCTATA-AA-TTAATAATTATAAATGT
34178 ATTAATTTTTATCTATAAATTAATAA-TATAAAT
1 ATTAATTTTTATCTATAAATTAATAATTATAAAT
34211 AGATTTATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 7 0.23
36 6 0.20
37 12 0.40
38 5 0.17
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (36 bp):
ATTAATTTTTATCTATAAATTAATAATTATAAATGT
Found at i:34418 original size:25 final size:24
Alignment explanation
Indices: 34379--34460 Score: 82
Period size: 25 Copynumber: 3.5 Consensus size: 24
34369 TCTTATTTAC
*
34379 TATAA-TATATATTATCTATATATA
1 TATAATTATATATTAT-TATATAAA
34403 TATAATTATATATTA-TATATAAA
1 TATAATTATATATTATTATATAAA
* *
34426 TA-AATTATTATATTATATTTATGAA
1 TATAATTA-TATATTAT-TATATAAA
34451 -ATAATTATAT
1 TATAATTATAT
34461 TATAATATTA
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
22 5 0.10
23 16 0.32
24 9 0.18
25 20 0.40
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (24 bp):
TATAATTATATATTATTATATAAA
Found at i:34424 original size:17 final size:17
Alignment explanation
Indices: 34383--34476 Score: 76
Period size: 17 Copynumber: 5.8 Consensus size: 17
34373 ATTTACTATA
*
34383 ATATAT-ATTATCTATAT
1 ATATATAATTATATAT-T
34400 ATATATAATTATATATT
1 ATATATAATTATATATT
*
34417 ATATATAA--ATAAATT
1 ATATATAATTATATATT
34432 AT-TAT-ATTATAT-TT
1 ATATATAATTATATATT
* *
34446 ATGAAATAATTATATTATA
1 AT-ATATAATTATA-TATT
34465 ATAT-TAATTATA
1 ATATATAATTATA
34477 AATAATTTTT
Statistics
Matches: 63, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
13 1 0.02
14 7 0.11
15 11 0.17
16 2 0.03
17 29 0.46
18 10 0.16
19 3 0.05
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (17 bp):
ATATATAATTATATATT
Found at i:34441 original size:30 final size:30
Alignment explanation
Indices: 34407--34481 Score: 77
Period size: 30 Copynumber: 2.6 Consensus size: 30
34397 TATATATATA
* *
34407 ATTATATATTAT-ATATAAATAAATTATTAT
1 ATTATAT-TTATGAAATAAATAAATTATAAT
* *
34437 ATTATATTTATGAAATAATTATATTATAAT
1 ATTATATTTATGAAATAAATAAATTATAAT
34467 ATTA-A-TTAT-AAATAA
1 ATTATATTTATGAAATAA
34482 TTTTTTATAA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
27 6 0.15
28 4 0.10
29 5 0.12
30 25 0.62
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (30 bp):
ATTATATTTATGAAATAAATAAATTATAAT
Found at i:34468 original size:25 final size:23
Alignment explanation
Indices: 34380--34483 Score: 70
Period size: 25 Copynumber: 4.3 Consensus size: 23
34370 CTTATTTACT
* * *
34380 ATAATATATATTATCTATATATAT
1 ATAAT-TATATTATATATTTATAA
*
34404 ATAATTATA-TAT-TATATATAA
1 ATAATTATATTATATATTTATAA
34425 ATAAATTAT-TATATTATATTTATGAA
1 AT-AATTATAT-TA-TATATTTAT-AA
34451 ATAATTATATTATAATATTAATTATAA
1 ATAATTATATTAT-ATA-T--TTATAA
34478 ATAATT
1 ATAATT
34484 TTTTATAAAA
Statistics
Matches: 67, Mismatches: 2, Indels: 19
0.76 0.02 0.22
Matches are distributed among these distances:
21 10 0.15
22 9 0.13
23 6 0.09
24 7 0.10
25 17 0.25
26 6 0.09
27 8 0.12
28 4 0.06
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (23 bp):
ATAATTATATTATATATTTATAA
Found at i:34499 original size:27 final size:29
Alignment explanation
Indices: 34439--34499 Score: 74
Period size: 27 Copynumber: 2.2 Consensus size: 29
34429 ATTATTATAT
* *
34439 TATATTTATGAAATAATTATATTATAATA
1 TATAATTATGAAATAATTATATTATAAAA
*
34468 T-TAATTAT-AAATAATT-TTTTATAAAA
1 TATAATTATGAAATAATTATATTATAAAA
34494 TATAAT
1 TATAAT
34500 GTTAATAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
26 9 0.32
27 12 0.43
28 6 0.21
29 1 0.04
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (29 bp):
TATAATTATGAAATAATTATATTATAAAA
Found at i:34985 original size:17 final size:16
Alignment explanation
Indices: 34965--35003 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
34955 TATATAATAT
*
34965 TTTATTTTAAATGATTA
1 TTTAATTTAAAT-ATTA
*
34982 TTTAATTTATATATTA
1 TTTAATTTAAATATTA
34998 TTTAAT
1 TTTAAT
35004 GTTATTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
TTTAATTTAAATATTA
Found at i:35133 original size:15 final size:16
Alignment explanation
Indices: 35076--35135 Score: 63
Period size: 15 Copynumber: 3.8 Consensus size: 16
35066 AATCATTGTT
35076 ATTAATTAATATTAGTTA
1 ATTAATTAATA-TAG-TA
*
35094 ATTTATTAAT-TAGTAA
1 ATTAATTAATATAGT-A
35110 ATTAA-TAATATA-TA
1 ATTAATTAATATAGTA
35124 ATTAATTAATAT
1 ATTAATTAATAT
35136 TTAATTTAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
14 6 0.16
15 12 0.32
16 10 0.27
18 9 0.24
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (16 bp):
ATTAATTAATATAGTA
Found at i:35140 original size:15 final size:14
Alignment explanation
Indices: 35077--35147 Score: 54
Period size: 15 Copynumber: 4.8 Consensus size: 14
35067 ATCATTGTTA
*
35077 TTAATTAATATTAG
1 TTAATTAATAATAG
*
35091 TTAATTTATTAATTAG
1 TTAA-TTAATAA-TAG
*
35107 TAAATTAATAATA-
1 TTAATTAATAATAG
*
35120 TATAATTAATTAATAT
1 T-TAATTAA-TAATAG
35136 TTAATTTAATAA
1 TTAA-TTAATAA
35148 ATTAGTGTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
13 1 0.02
14 12 0.26
15 22 0.48
16 11 0.24
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (14 bp):
TTAATTAATAATAG
Found at i:35407 original size:23 final size:22
Alignment explanation
Indices: 35362--35416 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
35352 AAATATTTAA
*
35362 TATAATTAATAAATTATTTATT
1 TATAATTAATAAATTATTAATT
*
35384 TGTAATTAAGTATAA-TATTAATT
1 TATAATTAA-TA-AATTATTAATT
35407 TATAA-TAATA
1 TATAATTAATA
35417 CAAATTGTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 2 0.07
22 11 0.39
23 13 0.46
24 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (22 bp):
TATAATTAATAAATTATTAATT
Found at i:35510 original size:27 final size:26
Alignment explanation
Indices: 35460--35522 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
35450 ATTGTATATT
* * *
35460 TTAATAAATTTATTACAATTAAATTAG
1 TTAATAATTTTATAACAATCAAA-TAG
*
35487 TTAATAATTTTATAATAATCAAATAG
1 TTAATAATTTTATAACAATCAAATAG
35513 TATAATAATT
1 T-TAATAATT
35523 AAATGTATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 4 0.13
27 27 0.87
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.44
Consensus pattern (26 bp):
TTAATAATTTTATAACAATCAAATAG
Found at i:35518 original size:16 final size:15
Alignment explanation
Indices: 35497--35531 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
35487 TTAATAATTT
35497 TATAATAATCAAATAG
1 TATAATAATCAAAT-G
*
35513 TATAATAATTAAATG
1 TATAATAATCAAATG
35528 TATA
1 TATA
35532 TTTGAATAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.37
Consensus pattern (15 bp):
TATAATAATCAAATG
Found at i:35568 original size:15 final size:16
Alignment explanation
Indices: 35543--35573 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
35533 TTGAATAGTC
35543 TATTGAATCAATAATT
1 TATTGAATCAATAATT
35559 TATT-AATCAATAATT
1 TATTGAATCAATAATT
35574 AAAATATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.45
Consensus pattern (16 bp):
TATTGAATCAATAATT
Found at i:35713 original size:7 final size:7
Alignment explanation
Indices: 35690--35714 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
35680 TAAATATTTT
35690 AATTTAA
1 AATTTAA
35697 AATTTAA
1 AATTTAA
35704 AATTTAA
1 AATTTAA
35711 AATT
1 AATT
35715 ATTAACATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
AATTTAA
Found at i:35714 original size:21 final size:21
Alignment explanation
Indices: 35673--35711 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
35663 AATTAAATAA
*
35673 TAAAAATTAAATATTTTAATT
1 TAAAAATTAAATATTTAAATT
*
35694 TAAAATTTAAA-ATTTAAA
1 TAAAAATTAAATATTTAAA
35712 ATTATTAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
TAAAAATTAAATATTTAAATT
Found at i:36204 original size:24 final size:23
Alignment explanation
Indices: 36141--36204 Score: 69
Period size: 24 Copynumber: 2.8 Consensus size: 23
36131 TTTGAAATAT
* *
36141 TAATAAATATAT-TAATT-TAAA
1 TAATAAATATTTATAATTACAAA
*
36162 TAATAAATATTTATTATTACAAA
1 TAATAAATATTTATAATTACAAA
*
36185 TAATCAAATATTTGTAATTA
1 TAAT-AAATATTTATAATTA
36205 AATATTAGTT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 11 0.31
22 4 0.11
23 7 0.20
24 13 0.37
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.44
Consensus pattern (23 bp):
TAATAAATATTTATAATTACAAA
Found at i:36329 original size:22 final size:21
Alignment explanation
Indices: 36273--36339 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 21
36263 ATATATATAA
*
36273 TATATTAATGTATAATTATAATT
1 TATATTAAT-TATAA-AATAATT
* *
36296 TATATGATTTATAAGAATAATT
1 TATATTAATTATAA-AATAATT
*
36318 TGTATTAATTATTAAAATAATT
1 TATATTAATTA-TAAAATAATT
36340 AACTATTATA
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
22 26 0.72
23 10 0.28
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (21 bp):
TATATTAATTATAAAATAATT
Found at i:36577 original size:14 final size:14
Alignment explanation
Indices: 36558--36584 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
36548 ATAAACTTAT
36558 TGATCAAATTATTG
1 TGATCAAATTATTG
36572 TGATCAAATTATT
1 TGATCAAATTATT
36585 ACTAAATATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.07, G:0.11, T:0.44
Consensus pattern (14 bp):
TGATCAAATTATTG
Found at i:36699 original size:23 final size:22
Alignment explanation
Indices: 36673--36719 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
36663 TTTTTATGTT
*
36673 ATATT-TAGTATTATAATTAGTTA
1 ATATTATA-TATTAT-ATAAGTTA
36696 ATATTATATATTATATAAGTTA
1 ATATTATATATTATATAAGTTA
36718 AT
1 AT
36720 TATATTTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 9 0.41
23 11 0.50
24 2 0.09
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (22 bp):
ATATTATATATTATATAAGTTA
Found at i:37578 original size:15 final size:16
Alignment explanation
Indices: 37560--37632 Score: 64
Period size: 15 Copynumber: 4.5 Consensus size: 16
37550 TTATTGATTA
37560 AATAATTAT-ATTTAT
1 AATAATTATAATTTAT
37575 AAT-ATTATTAATTTAT
1 AATAATTA-TAATTTAT
37591 ATATAATATATAATATTAT
1 A-ATAAT-TATAAT-TTAT
*
37610 AAT--TTATAAATGTAT
1 AATAATTAT-AATTTAT
37625 AATAATTA
1 AATAATTA
37633 ATTTAAATTA
Statistics
Matches: 48, Mismatches: 1, Indels: 16
0.74 0.02 0.25
Matches are distributed among these distances:
14 4 0.08
15 13 0.27
16 11 0.23
17 5 0.10
18 8 0.17
19 7 0.15
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (16 bp):
AATAATTATAATTTAT
Found at i:37590 original size:22 final size:21
Alignment explanation
Indices: 37564--37637 Score: 66
Period size: 22 Copynumber: 3.5 Consensus size: 21
37554 TGATTAAATA
37564 ATTATATTTATAATATTATTAAT
1 ATTATATTTATAATA-TA-TAAT
37587 -TTATA--TATAATATATAAT
1 ATTATATTTATAATATATAAT
*
37605 ATTATAATTTATAAATGTATAAT
1 ATTAT-ATTTAT-AATATATAAT
37628 AATTA-ATTTA
1 -ATTATATTTA
37638 AATTATTATT
Statistics
Matches: 44, Mismatches: 1, Indels: 13
0.76 0.02 0.22
Matches are distributed among these distances:
18 4 0.09
19 6 0.14
20 8 0.18
22 13 0.30
23 9 0.20
24 4 0.09
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (21 bp):
ATTATATTTATAATATATAAT
Found at i:37672 original size:22 final size:21
Alignment explanation
Indices: 37608--37676 Score: 70
Period size: 22 Copynumber: 3.2 Consensus size: 21
37598 ATATAATATT
*
37608 ATAATTTATAAATGTATAATAA
1 ATAATTTATAAATG-ATTATAA
* *
37630 TTAA-TT-TAAATTATTATTAA
1 ATAATTTATAAATGATTA-TAA
37650 ATAATTTATAAACTGATTATAA
1 ATAATTTATAAA-TGATTATAA
37672 ATAAT
1 ATAAT
37677 AAATTATATT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
19 3 0.08
20 11 0.29
21 4 0.11
22 15 0.39
23 5 0.13
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (21 bp):
ATAATTTATAAATGATTATAA
Found at i:38100 original size:29 final size:31
Alignment explanation
Indices: 38053--38115 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 31
38043 ACATTATTAG
* * *
38053 TTAATTAGTTTAATTTATTTAATAATTAAAA
1 TTAATTAGTATAATTTATTAAATAATAAAAA
38084 TTAATTAGTAT-A-TTATTAAATAATAAAAA
1 TTAATTAGTATAATTTATTAAATAATAAAAA
38113 TTA
1 TTA
38116 TTTAATTTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 18 0.62
30 1 0.03
31 10 0.34
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (31 bp):
TTAATTAGTATAATTTATTAAATAATAAAAA
Found at i:38171 original size:21 final size:21
Alignment explanation
Indices: 38147--38193 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
38137 ATAATCACAA
38147 ATAATAT-TGTTATGAACAATT
1 ATAATATCTGTTATGAA-AATT
**
38168 ATAAT-TCTGTTATTTAAATT
1 ATAATATCTGTTATGAAAATT
38188 ATAATA
1 ATAATA
38194 ATCTAGTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.47
Consensus pattern (21 bp):
ATAATATCTGTTATGAAAATT
Found at i:38958 original size:18 final size:19
Alignment explanation
Indices: 38935--38977 Score: 70
Period size: 18 Copynumber: 2.3 Consensus size: 19
38925 TAATTCAATA
38935 TAATATGAATATTATATG-
1 TAATATGAATATTATATGT
*
38953 TAATATTAATATTATATGT
1 TAATATGAATATTATATGT
38972 TAATAT
1 TAATAT
38978 TATCATAAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 17 0.74
19 6 0.26
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (19 bp):
TAATATGAATATTATATGT
Found at i:39757 original size:42 final size:43
Alignment explanation
Indices: 39711--39808 Score: 114
Period size: 42 Copynumber: 2.3 Consensus size: 43
39701 AATACTATAC
39711 AAAATATTTAT-ATAATACAT-ATAAAATTATTTTTATTAAGAT
1 AAAATATTTATAATAAT-CATAATAAAATTATTTTTATTAAGAT
* ** *
39753 AAAATA-TTATAATAATTATAATACTATTATTTTTGTTAAGAT
1 AAAATATTTATAATAATCATAATAAAATTATTTTTATTAAGAT
39795 -AAATATATTATAAT
1 AAAATAT-TTATAAT
39809 TATAATATTA
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
41 11 0.23
42 30 0.62
43 7 0.15
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (43 bp):
AAAATATTTATAATAATCATAATAAAATTATTTTTATTAAGAT
Found at i:40764 original size:21 final size:21
Alignment explanation
Indices: 40707--40767 Score: 69
Period size: 21 Copynumber: 3.0 Consensus size: 21
40697 TATATTATAT
40707 TTATA-AACTATTATTAA-AACA
1 TTATATAA-TATTATTAATAA-A
40728 TTATATAATA-TA--AATAAA
1 TTATATAATATTATTAATAAA
40746 TTATATAATATTATTAATAAA
1 TTATATAATATTATTAATAAA
40767 T
1 T
40768 AATTTTAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
18 13 0.37
19 4 0.11
20 2 0.06
21 14 0.40
22 2 0.06
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (21 bp):
TTATATAATATTATTAATAAA
Found at i:41634 original size:17 final size:16
Alignment explanation
Indices: 41599--41672 Score: 60
Period size: 17 Copynumber: 4.3 Consensus size: 16
41589 TTAACTAATC
41599 AATTAATTATAATTTATT
1 AATTAATT-TAA-TTATT
41617 ATATTAATTTAATTATT
1 A-ATTAATTTAATTATT
*
41634 AATATAATTTATTTTATT
1 AAT-TAATTTA-ATTATT
* *
41652 ATACT-ATTTATTTATT
1 A-ATTAATTTAATTATT
41668 AATTA
1 AATTA
41673 TTACTATACT
Statistics
Matches: 48, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
15 2 0.04
16 9 0.19
17 18 0.38
18 11 0.23
19 8 0.17
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (16 bp):
AATTAATTTAATTATT
Found at i:41635 original size:12 final size:12
Alignment explanation
Indices: 41601--41642 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
41591 AACTAATCAA
41601 TTAATTA-TAAT
1 TTAATTATTAAT
*
41612 TTATTATATTAAT
1 TTAAT-TATTAAT
41625 TTAATTATTAAT
1 TTAATTATTAAT
*
41637 ATAATT
1 TTAATT
41643 TATTTTATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
11 4 0.15
12 14 0.54
13 8 0.31
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
TTAATTATTAAT
Found at i:41663 original size:30 final size:30
Alignment explanation
Indices: 41586--41652 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
41576 TATTTTTGTA
*
41586 ATATTAA-CTAATCAATTAATTATAATTTATT
1 ATATTAATCTAAT-TATTAA-TATAATTTATT
*
41617 ATATTAATTTAATTATTAATATAATTTATT
1 ATATTAATCTAATTATTAATATAATTTATT
*
41647 TTATTA
1 ATATTA
41653 TACTATTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 16 0.50
31 12 0.38
32 4 0.12
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (30 bp):
ATATTAATCTAATTATTAATATAATTTATT
Found at i:41677 original size:21 final size:22
Alignment explanation
Indices: 41613--41679 Score: 68
Period size: 21 Copynumber: 3.1 Consensus size: 22
41603 AATTATAATT
* *
41613 TATTATATTAATTTAATTATTAA
1 TATTA-ATTTATTTAATTATTAC
*
41636 TA-TAATTTATTTTATTA-TAC
1 TATTAATTTATTTAATTATTAC
*
41656 TATTTATTTA-TTAATTATTAC
1 TATTAATTTATTTAATTATTAC
41677 TAT
1 TAT
41680 ACTAATAATA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
20 10 0.27
21 23 0.62
22 2 0.05
23 2 0.05
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (22 bp):
TATTAATTTATTTAATTATTAC
Found at i:41900 original size:17 final size:17
Alignment explanation
Indices: 41855--41896 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
41845 AAAAGATTTA
* * *
41855 TAATATAAATTATAATT
1 TAATATATATAATAATC
41872 TAATATATATAATAATC
1 TAATATATATAATAATC
41889 TAAT-TATA
1 TAATATATA
41897 ATAAGGTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (17 bp):
TAATATATATAATAATC
Found at i:42787 original size:14 final size:16
Alignment explanation
Indices: 42768--42814 Score: 53
Period size: 17 Copynumber: 3.0 Consensus size: 16
42758 GTAAACAACA
42768 TTATAAT-ATT-ATAT
1 TTATAATGATTAATAT
42782 TTATAATGATTAATAT
1 TTATAATGATTAATAT
* *
42798 TAATTAATTATTAATAT
1 TTA-TAATGATTAATAT
42815 AATTAATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 7 0.25
15 3 0.11
16 6 0.21
17 12 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (16 bp):
TTATAATGATTAATAT
Found at i:42810 original size:17 final size:17
Alignment explanation
Indices: 42785--42830 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
42775 ATTATATTTA
*
42785 TAATGATTAATATTAAT
1 TAATTATTAATATTAAT
42802 TAATTATTAATA-TAAT
1 TAATTATTAATATTAAT
*
42818 TAA-TAATAATATT
1 TAATTATTAATATT
42831 TGAATTATTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 7 0.27
16 8 0.31
17 11 0.42
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (17 bp):
TAATTATTAATATTAAT
Found at i:42824 original size:29 final size:30
Alignment explanation
Indices: 42783--42839 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 30
42773 ATATTATATT
* *
42783 TATAATGATTAATATTAATT-AATTATTAA
1 TATAATGAATAATAATAATTGAATTATTAA
* *
42812 TATAATTAATAATAATATTTGAATTATT
1 TATAATGAATAATAATAATTGAATTATT
42840 CTTGCTTAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 16 0.70
30 7 0.30
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (30 bp):
TATAATGAATAATAATAATTGAATTATTAA
Found at i:43133 original size:14 final size:15
Alignment explanation
Indices: 43110--43138 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
43100 TAAAATCATT
43110 AATTATTATTAATTA
1 AATTATTATTAATTA
43125 AATTA-TATTAATTA
1 AATTATTATTAATTA
43139 TATTTGATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
AATTATTATTAATTA
Found at i:43241 original size:17 final size:17
Alignment explanation
Indices: 43219--43251 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
43209 ATTGTTATAG
*
43219 TTTATATTAATTATTTT
1 TTTATATAAATTATTTT
43236 TTTATATAAATTATTT
1 TTTATATAAATTATTT
43252 ATTAATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTATATAAATTATTTT
Found at i:43856 original size:23 final size:23
Alignment explanation
Indices: 43797--43842 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 23
43787 AAATAATAAT
43797 ATTTATTAA-TT-AA-T-AAATA
1 ATTTATTAATTTAAATTAAAATA
43816 ATTTATTAATTTAAATTAAAATA
1 ATTTATTAATTTAAATTAAAATA
43839 ATTT
1 ATTT
43843 TAATTTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.39
20 2 0.09
21 2 0.09
22 1 0.04
23 9 0.39
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
ATTTATTAATTTAAATTAAAATA
Found at i:43887 original size:17 final size:17
Alignment explanation
Indices: 43800--43894 Score: 56
Period size: 17 Copynumber: 5.6 Consensus size: 17
43790 TAATAATATT
* *
43800 TATTAATTAATAAATAA
1 TATTATTTAATTAATAA
43817 TTTATTAATTTAAATTAA-AA
1 --TATT-ATTT-AATTAATAA
* *
43837 TAAT-TTTAATT-TTAA
1 TATTATTTAATTAATAA
*
43852 TATTA--TAATTTAATTA
1 TATTATTTAA-TTAATAA
*
43868 TATTGTTTAATTAATAA
1 TATTATTTAATTAATAA
43885 TATTATTTAA
1 TATTATTTAA
43895 ATTACTTATT
Statistics
Matches: 58, Mismatches: 10, Indels: 18
0.67 0.12 0.21
Matches are distributed among these distances:
14 3 0.05
15 11 0.19
16 9 0.16
17 15 0.26
18 6 0.10
19 4 0.07
20 5 0.09
21 5 0.09
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (17 bp):
TATTATTTAATTAATAA
Found at i:43910 original size:33 final size:30
Alignment explanation
Indices: 43848--43925 Score: 72
Period size: 30 Copynumber: 2.6 Consensus size: 30
43838 AATTTTAATT
* *
43848 TTAATATTATAATTT-AATTATATTGTTTAA
1 TTAATAATAT-ATTTAAATTATATTATTTAA
43878 TTAATAATATTATTTAAATTACTTATTATTTAA
1 TTAATAATA-TATTTAAATTA--TATTATTTAA
*
43911 ATAA-AATA-ATTTAAA
1 TTAATAATATATTTAAA
43926 CAATTGTTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
30 19 0.46
31 6 0.15
32 4 0.10
33 12 0.29
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (30 bp):
TTAATAATATATTTAAATTATATTATTTAA
Found at i:44410 original size:25 final size:25
Alignment explanation
Indices: 44382--44436 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
44372 AGGAAATTTA
*
44382 TAATAATTTAATTATTTTAAAATAT
1 TAATAATTTAATTATTATAAAATAT
* **
44407 TAATTATTTTGTTATTATAAAATAT
1 TAATAATTTAATTATTATAAAATAT
*
44432 GAATA
1 TAATA
44437 TATGTTATAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (25 bp):
TAATAATTTAATTATTATAAAATAT
Found at i:45105 original size:14 final size:13
Alignment explanation
Indices: 45086--45161 Score: 57
Period size: 14 Copynumber: 5.4 Consensus size: 13
45076 TAATTAATTA
45086 ATAATATATTTATT
1 ATAATAT-TTTATT
45100 ATAATATTAATTATT
1 ATAATATT--TTATT
45115 -TAA-ATTTATACTAT
1 ATAATATTT-TA-T-T
*
45129 ATAAAATTATTATT
1 ATAATATT-TTATT
45143 ATAATATTTTAATT
1 ATAATATTTT-ATT
45157 ATAAT
1 ATAAT
45162 TATAAACCTT
Statistics
Matches: 52, Mismatches: 1, Indels: 18
0.73 0.01 0.25
Matches are distributed among these distances:
11 1 0.02
12 2 0.04
13 7 0.13
14 27 0.52
15 9 0.17
16 5 0.10
17 1 0.02
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (13 bp):
ATAATATTTTATT
Found at i:45366 original size:19 final size:19
Alignment explanation
Indices: 45344--45383 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
45334 ATAAAAATTA
45344 TATTAATAATAATATTAAT
1 TATTAATAATAATATTAAT
* * *
45363 TATTTATATTAATATTTAT
1 TATTAATAATAATATTAAT
45382 TA
1 TA
45384 ACTTATTATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TATTAATAATAATATTAAT
Found at i:45378 original size:12 final size:12
Alignment explanation
Indices: 45341--45381 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
45331 CTTATAAAAA
*
45341 TTATATTAATAA
1 TTATATTAATAT
*
45353 TAATATTAATTAT
1 TTATATTAA-TAT
45366 TTATATTAATAT
1 TTATATTAATAT
45378 TTAT
1 TTAT
45382 TAACTTATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 15 0.60
13 10 0.40
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
TTATATTAATAT
Found at i:45991 original size:16 final size:16
Alignment explanation
Indices: 45951--45992 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
45941 TTTATATTTA
45951 ATTAATAAT-TAAATT
1 ATTAATAATATAAATT
*
45966 ATT-ATAAATATCAATT
1 ATTAAT-AATATAAATT
45982 ATTAATAATAT
1 ATTAATAATAT
45993 TTTATTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
14 2 0.09
15 6 0.26
16 13 0.57
17 2 0.09
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
ATTAATAATATAAATT
Found at i:46668 original size:33 final size:31
Alignment explanation
Indices: 46631--46698 Score: 75
Period size: 33 Copynumber: 2.1 Consensus size: 31
46621 TAGATAGTCA
* *
46631 TAAT-ATTAAGATTATTATAACTTATTTAATTGC
1 TAATAATTAA-ATAATTAT-ACTAATTT-ATTGC
*
46664 TAATAATTAAATAATTATACTAATTTATTTC
1 TAATAATTAAATAATTATACTAATTTATTGC
46695 TAAT
1 TAAT
46699 CAAATTAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
31 8 0.26
32 7 0.23
33 11 0.35
34 5 0.16
ACGTcount: A:0.43, C:0.06, G:0.03, T:0.49
Consensus pattern (31 bp):
TAATAATTAAATAATTATACTAATTTATTGC
Found at i:46815 original size:27 final size:26
Alignment explanation
Indices: 46767--46820 Score: 74
Period size: 25 Copynumber: 2.0 Consensus size: 26
46757 TTTAATACTT
*
46767 ATAGTTATACTTATAATATTAATTAA
1 ATAGTTATAATTATAATATTAATTAA
46793 ATAGTTA-AATTATAATATTTTAATTAA
1 ATAGTTATAATTATAATA--TTAATTAA
46820 A
1 A
46821 CATAATACTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 9 0.36
26 7 0.28
27 9 0.36
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (26 bp):
ATAGTTATAATTATAATATTAATTAA
Found at i:47180 original size:18 final size:19
Alignment explanation
Indices: 47149--47186 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
47139 AATATATGAT
47149 TTAATATTAAAATT-ATAA
1 TTAATATTAAAATTAATAA
**
47167 TTAATATTTTAATTAATAA
1 TTAATATTAAAATTAATAA
47186 T
1 T
47187 CTATTTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TTAATATTAAAATTAATAA
Found at i:47706 original size:15 final size:15
Alignment explanation
Indices: 47686--47717 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
47676 AAACTTTTGA
*
47686 ATAATATTATATAAT
1 ATAATATTATAAAAT
47701 ATAATATTATAAAAT
1 ATAATATTATAAAAT
47716 AT
1 AT
47718 TATAACTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATATTATAAAAT
Found at i:47789 original size:25 final size:25
Alignment explanation
Indices: 47761--47826 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 25
47751 AGAATTAAAT
*
47761 ATAATTAGTAAAAATATATTTAA-TA
1 ATAATTAATAAAAATAT-TTTAATTA
*
47786 ATAATTAATTAAAATATTTTAATTA
1 ATAATTAATAAAAATATTTTAATTA
*
47811 ATTAATTAATTAAAAT
1 A-TAATTAATAAAAAT
47827 TTAAATATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
24 5 0.14
25 18 0.49
26 14 0.38
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (25 bp):
ATAATTAATAAAAATATTTTAATTA
Found at i:47815 original size:22 final size:24
Alignment explanation
Indices: 47758--47819 Score: 83
Period size: 25 Copynumber: 2.6 Consensus size: 24
47748 TATAGAATTA
* *
47758 AATATAATTAGTAAAAATATATTT
1 AATATAATTAATTAAAATATATTT
47782 AATAATAATTAATTAAAATAT-TTT
1 AAT-ATAATTAATTAAAATATATTT
47806 AAT-TAATTAATTAA
1 AATATAATTAATTAA
47820 TTAAAATTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
22 11 0.31
24 9 0.26
25 15 0.43
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (24 bp):
AATATAATTAATTAAAATATATTT
Found at i:48319 original size:17 final size:16
Alignment explanation
Indices: 48292--48345 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 16
48282 AATATTTATT
48292 TAATT-AAATAAATTGA
1 TAATTAAAATAAATT-A
48308 TAATTAAAATAAA-TA
1 TAATTAAAATAAATTA
*
48323 T--TTAAAATTAATTAA
1 TAATTAAAATAAATT-A
48338 TAATTAAA
1 TAATTAAA
48346 TAATAATACT
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
13 9 0.28
14 1 0.03
15 4 0.12
16 6 0.19
17 12 0.38
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (16 bp):
TAATTAAAATAAATTA
Found at i:48475 original size:16 final size:16
Alignment explanation
Indices: 48454--48488 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
48444 TTATAAGGAT
48454 TTTAATT-TTAATATTA
1 TTTAATTATTAAT-TTA
48470 TTTAATTATTAATTTA
1 TTTAATTATTAATTTA
48486 TTT
1 TTT
48489 TTAATATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
TTTAATTATTAATTTA
Found at i:48542 original size:31 final size:31
Alignment explanation
Indices: 48459--48527 Score: 90
Period size: 28 Copynumber: 2.3 Consensus size: 31
48449 AGGATTTTAA
* *
48459 TTTTAATATTATT--TAAT-TATTAATTTAT
1 TTTTAATATTATTAATAATAAATTAATATAT
48487 TTTTAATATTATTAATAATAAATTAATATAT
1 TTTTAATATTATTAATAATAAATTAATATAT
48518 TATTTAATAT
1 T-TTTAATAT
48528 GTTTATATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 13 0.37
30 4 0.11
31 10 0.29
32 8 0.23
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (31 bp):
TTTTAATATTATTAATAATAAATTAATATAT
Found at i:48758 original size:26 final size:26
Alignment explanation
Indices: 48712--48784 Score: 67
Period size: 26 Copynumber: 2.8 Consensus size: 26
48702 AAACAAAATG
* **
48712 TTAATACTATATCAATTATTATTTTA
1 TTAATACTATATCAATAATTAAATTA
*
48738 TTAATATTATAGT-AATAATTAAATTA
1 TTAATACTATA-TCAATAATTAAATTA
* *
48764 TTAAAACTATAATAAATAATT
1 TTAATACTAT-ATCAATAATT
48785 TCAATAATTT
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
26 29 0.76
27 9 0.24
ACGTcount: A:0.48, C:0.04, G:0.01, T:0.47
Consensus pattern (26 bp):
TTAATACTATATCAATAATTAAATTA
Found at i:48836 original size:43 final size:42
Alignment explanation
Indices: 48789--48888 Score: 100
Period size: 39 Copynumber: 2.4 Consensus size: 42
48779 ATAATTTCAA
*
48789 TAATTTAATATTAATTAGATAATTGTTCGA-ATAAGTTATTATT
1 TAATTTAATATTAATTAGATAA-TGTT-GATATAAGTTATTAAT
* *
48832 TAA-TT--TATTAAATAGATAATGTTGATATAATTTATTAAT
1 TAATTTAATATTAATTAGATAATGTTGATATAAGTTATTAAT
* *
48871 TATTTTTAATATAAATTA
1 TA-ATTTAATATTAATTA
48889 AGTTTTATAA
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
38 2 0.04
39 17 0.37
40 13 0.28
41 2 0.04
42 2 0.04
43 10 0.22
ACGTcount: A:0.42, C:0.01, G:0.07, T:0.50
Consensus pattern (42 bp):
TAATTTAATATTAATTAGATAATGTTGATATAAGTTATTAAT
Found at i:49213 original size:23 final size:23
Alignment explanation
Indices: 49186--49241 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 23
49176 ATTACTTATT
* *
49186 TATTATTTA-ATTATATATATAA
1 TATTATTTATATAATATAAATAA
*
49208 TAATTA-TCATATAATATAAATAA
1 T-ATTATTTATATAATATAAATAA
49231 TATTATTTATA
1 TATTATTTATA
49242 GAGATTTAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
22 7 0.26
23 20 0.74
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (23 bp):
TATTATTTATATAATATAAATAA
Found at i:49240 original size:26 final size:26
Alignment explanation
Indices: 49164--49240 Score: 68
Period size: 26 Copynumber: 3.0 Consensus size: 26
49154 CTCTATAAAT
* *
49164 ATATAA-ATAAATATTACTTATTTATT
1 ATATAATATAAATAATA-TTATTTATC
* * * *
49190 ATTTAAT-TATATATATAATAATTATC
1 ATATAATATAAATA-ATATTATTTATC
49216 ATATAATATAAATAATATTATTTAT
1 ATATAATATAAATAATATTATTTAT
49241 AGAGATTTAA
Statistics
Matches: 38, Mismatches: 10, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
26 31 0.82
27 7 0.18
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (26 bp):
ATATAATATAAATAATATTATTTATC
Found at i:49325 original size:18 final size:19
Alignment explanation
Indices: 49302--49337 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
49292 TATTTTATTA
*
49302 TTAA-TTATTAGTACAAGC
1 TTAATTTATTAGAACAAGC
49320 TTAATTTATTAGAACAAG
1 TTAATTTATTAGAACAAG
49338 TCAATTAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.42, C:0.08, G:0.11, T:0.39
Consensus pattern (19 bp):
TTAATTTATTAGAACAAGC
Found at i:49343 original size:18 final size:19
Alignment explanation
Indices: 49306--49343 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
49296 TTATTATTAA
* *
49306 TTATTAGTACAAGCTTAAT
1 TTATTAGAACAAGCTCAAT
49325 TTATTAGAACAAG-TCAAT
1 TTATTAGAACAAGCTCAAT
49343 T
1 T
49344 AACTATTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (19 bp):
TTATTAGAACAAGCTCAAT
Found at i:49345 original size:22 final size:19
Alignment explanation
Indices: 49301--49351 Score: 50
Period size: 19 Copynumber: 2.6 Consensus size: 19
49291 CTATTTTATT
*
49301 ATTAATTATTAGTACAAGC
1 ATTAATTATTAGAACAAGC
49320 -TTAATTTATTAGAACAAGTC
1 ATTAA-TTATTAGAACAAG-C
*
49340 AATTAACTATTA
1 -ATTAATTATTA
49352 ATTAAGTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
18 4 0.15
19 12 0.46
20 1 0.04
21 5 0.19
22 4 0.15
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (19 bp):
ATTAATTATTAGAACAAGC
Found at i:49634 original size:12 final size:13
Alignment explanation
Indices: 49602--49637 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
49592 ATACTATAAT
*
49602 TATTATCATAAAA
1 TATTATTATAAAA
49615 TATTATTATAAAA
1 TATTATTATAAAA
49628 T-TTATTATAA
1 TATTATTATAA
49638 TATTATACTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 9 0.41
13 13 0.59
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (13 bp):
TATTATTATAAAA
Found at i:50082 original size:29 final size:29
Alignment explanation
Indices: 50050--50122 Score: 82
Period size: 26 Copynumber: 2.6 Consensus size: 29
50040 GATTATCCAC
50050 ATTTACAATTAAATTATAAATA-TTATTTT
1 ATTTACAA-TAAATTATAAATACTTATTTT
*
50079 ATTT--AAT-AATAATAAATACTTATTTT
1 ATTTACAATAAATTATAAATACTTATTTT
50105 ATTTATCAATAATATTAT
1 ATTTA-CAATAA-ATTAT
50123 TATTGATACT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
25 10 0.28
26 12 0.33
27 2 0.06
29 7 0.19
30 1 0.03
31 4 0.11
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (29 bp):
ATTTACAATAAATTATAAATACTTATTTT
Found at i:50092 original size:21 final size:24
Alignment explanation
Indices: 50065--50123 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
50055 CAATTAAATT
50065 ATAAATATTATTTTATTTAATAAT-A
1 ATAAATATTATTTTATTT-AT-ATCA
50090 ATAAATACTTATTTTA-TT-TATCA
1 ATAAATA-TTATTTTATTTATATCA
50113 AT-AATATTATT
1 ATAAATATTATT
50124 ATTGATACTT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
21 5 0.16
22 6 0.19
23 4 0.12
25 9 0.28
26 8 0.25
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (24 bp):
ATAAATATTATTTTATTTATATCA
Found at i:50106 original size:26 final size:25
Alignment explanation
Indices: 50065--50126 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 25
50055 CAATTAAATT
50065 ATAAATATTATTTTATTTAAT-AATA
1 ATAAATATTATTTTATTT-ATCAATA
50090 ATAAATACTTATTTTATTTATCAATA
1 ATAAATA-TTATTTTATTTATCAATA
*
50116 AT-ATTATTATT
1 ATAAATATTATT
50127 GATACTTATA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
24 5 0.15
25 12 0.35
26 17 0.50
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (25 bp):
ATAAATATTATTTTATTTATCAATA
Found at i:50159 original size:20 final size:21
Alignment explanation
Indices: 50134--50188 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 21
50124 ATTGATACTT
* *
50134 ATAATTAATATTGTATTT-TA
1 ATAATTAATAATATATTTATA
* *
50154 ATAATTATTAATATATTTATT
1 ATAATTAATAATATATTTATA
*
50175 ATAATTAATTATAT
1 ATAATTAATAATAT
50189 TATATCTGAT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (21 bp):
ATAATTAATAATATATTTATA
Found at i:50316 original size:15 final size:15
Alignment explanation
Indices: 50296--50336 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
50286 GTATCTATTA
50296 TATAATATAAATAGT
1 TATAATATAAATAGT
50311 TATAAT-TAAAT-GT
1 TATAATATAAATAGT
50324 TA-AATATTAAATA
1 TATAATA-TAAATA
50337 ATAATTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
12 3 0.13
13 4 0.17
14 10 0.43
15 6 0.26
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (15 bp):
TATAATATAAATAGT
Found at i:50444 original size:10 final size:9
Alignment explanation
Indices: 50429--50479 Score: 57
Period size: 10 Copynumber: 5.3 Consensus size: 9
50419 ATCATAAACT
50429 TTAATATTAA
1 TTAATATT-A
50439 TTAATAATTA
1 TTAAT-ATTA
50449 TTAATATTA
1 TTAATATTA
*
50458 TTATTATTA
1 TTAATATTA
*
50467 TTAGGTATTA
1 TTA-ATATTA
50477 TTA
1 TTA
50480 CATAAAATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
9 15 0.41
10 19 0.51
11 3 0.08
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (9 bp):
TTAATATTA
Found at i:50589 original size:20 final size:20
Alignment explanation
Indices: 50561--50603 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
50551 TATAAAATAA
* *
50561 TATTTAAATTATTTATAAAT
1 TATTAAAATTATTTAAAAAT
*
50581 TATTAAAATTTTTTAAAAAT
1 TATTAAAATTATTTAAAAAT
50601 TAT
1 TAT
50604 ATATATAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TATTAAAATTATTTAAAAAT
Found at i:50686 original size:28 final size:29
Alignment explanation
Indices: 50633--50696 Score: 69
Period size: 28 Copynumber: 2.2 Consensus size: 29
50623 AATATTTTTA
**
50633 ATTAAATTTGTTTAATATCTAAAAT-ATT
1 ATTAAATTAATTTAATATCTAAAATAATT
*
50661 ATTAAATTAATTTAAT-TTTAAGAATAAATT
1 ATTAAATTAATTTAATATCTAA-AAT-AATT
50691 ATTAAA
1 ATTAAA
50697 ACATTTATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 4 0.13
28 17 0.57
30 9 0.30
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (29 bp):
ATTAAATTAATTTAATATCTAAAATAATT
Found at i:50973 original size:17 final size:17
Alignment explanation
Indices: 50951--51031 Score: 51
Period size: 17 Copynumber: 4.6 Consensus size: 17
50941 AATTTATTTA
50951 TTATTAAATATTAATAT
1 TTATTAAATATTAATAT
*
50968 TTATTAATATATAAATTAT
1 TTATTAA-ATATTAA-TAT
*
50987 TATATTTAATTAATTAATA-
1 T-TA-TTAAAT-ATTAATAT
*
51006 -TATCAATATATTAA-AT
1 TTATTAA-ATATTAATAT
*
51022 TTATTTAATA
1 TTATTAAATA
51032 ATATTATAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 17
0.67 0.10 0.23
Matches are distributed among these distances:
15 1 0.02
16 11 0.22
17 14 0.29
18 6 0.12
19 4 0.08
20 5 0.10
21 8 0.16
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (17 bp):
TTATTAAATATTAATAT
Found at i:50976 original size:42 final size:47
Alignment explanation
Indices: 50912--51016 Score: 114
Period size: 42 Copynumber: 2.3 Consensus size: 47
50902 ATATTATTTT
*
50912 TTAAATATTAAT-TATGAATAATAT-TAACTAATT-TATTT-ATT-A
1 TTAAATATTAATATATGAATAATATATAAATAATTATATTTAATTAA
* * *
50954 TTAAATATTAATAT-TTATTAATATATAAATTATTATATTTAATTAA
1 TTAAATATTAATATATGAATAATATATAAATAATTATATTTAATTAA
*
51000 TTAATATATCAATATAT
1 TTAA-ATATTAATATAT
51017 TAAATTTATT
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
42 20 0.39
43 8 0.16
44 5 0.10
45 3 0.06
46 5 0.10
47 9 0.18
48 1 0.02
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.50
Consensus pattern (47 bp):
TTAAATATTAATATATGAATAATATATAAATAATTATATTTAATTAA
Found at i:50982 original size:24 final size:24
Alignment explanation
Indices: 50917--51002 Score: 77
Period size: 24 Copynumber: 3.4 Consensus size: 24
50907 ATTTTTTAAA
*
50917 TATTAATTATGAATAATATTAACTAATT
1 TATTAATTAT-TA-AATATTAA-T-ATT
*
50945 TATTTATTATTAAATATTAATATT
1 TATTAATTATTAAATATTAATATT
50969 TATTAA-TATATAAATTATT-ATATT
1 TATTAATTAT-TAAA-TATTAATATT
50993 TAATTAATTA
1 T-ATTAATTA
51003 ATATATCAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 10
0.80 0.05 0.16
Matches are distributed among these distances:
23 3 0.06
24 18 0.35
25 10 0.20
26 10 0.20
27 1 0.02
28 9 0.18
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (24 bp):
TATTAATTATTAAATATTAATATT
Found at i:50985 original size:29 final size:27
Alignment explanation
Indices: 50955--51067 Score: 72
Period size: 29 Copynumber: 4.0 Consensus size: 27
50945 TATTTATTAT
50955 TAAATATTAATATTTATTAATATATAAA
1 TAAATATTAA-ATTTATTAATATATAAA
* * * *
50983 TTATTATATTTAATTAATTAATATATCAA
1 -TA-AATATTAAATTTATTAATATATAAA
51012 T--ATATTAAATTTATTTAATAATATTATAA
1 TAAATATTAAATTTA-TTAAT-ATA-TA-AA
*
51041 TAATATACT-AATATTATTAATAT-TAAA
1 TAA-ATATTAAAT-TTATTAATATATAAA
51068 ATCATTATGA
Statistics
Matches: 67, Mismatches: 8, Indels: 20
0.71 0.08 0.21
Matches are distributed among these distances:
25 10 0.15
26 5 0.07
27 5 0.07
28 4 0.06
29 20 0.30
30 8 0.12
31 8 0.12
32 7 0.10
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.49
Consensus pattern (27 bp):
TAAATATTAAATTTATTAATATATAAA
Found at i:51680 original size:13 final size:13
Alignment explanation
Indices: 51662--51702 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
51652 TTGATTGTAT
*
51662 TTATTAATTATAC
1 TTATTAATTATAA
51675 TTATTAATTATAA
1 TTATTAATTATAA
51688 TTA-TAATTATTAA
1 TTATTAATTA-TAA
51701 TT
1 TT
51703 TAAAATTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
12 6 0.23
13 20 0.77
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (13 bp):
TTATTAATTATAA
Found at i:51688 original size:19 final size:19
Alignment explanation
Indices: 51666--51702 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
51656 TTGTATTTAT
*
51666 TAATTATACTTATTAATTA
1 TAATTATAATTATTAATTA
51685 TAATTATAATTATTAATT
1 TAATTATAATTATTAATT
51703 TAAAATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (19 bp):
TAATTATAATTATTAATTA
Found at i:51820 original size:28 final size:28
Alignment explanation
Indices: 51761--51894 Score: 87
Period size: 28 Copynumber: 4.6 Consensus size: 28
51751 ATGATTATAT
* *
51761 TATAATTCATT-TTAAGA-ATAATATTATT
1 TATAATT-ATTATTAATATATAATATTA-A
51789 TATAATTATTATTAATATATAATATTAA
1 TATAATTATTATTAATATATAATATTAA
* *
51817 TATAAATGTTATTAATATAACTTAA-ATTAA
1 TATAATTATTATTAATAT-A--TAATATTAA
* *
51847 TA-AATTATATAATAATTATTATTATATTAA
1 TATAATTAT-TATTAA-TA-TATAATATTAA
* *
51877 AATAATTACTAATTAATA
1 TATAATTA-TTATTAATA
51895 ATTGTATATA
Statistics
Matches: 84, Mismatches: 11, Indels: 20
0.73 0.10 0.17
Matches are distributed among these distances:
27 3 0.04
28 28 0.33
29 16 0.19
30 20 0.24
31 15 0.18
32 2 0.02
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.47
Consensus pattern (28 bp):
TATAATTATTATTAATATATAATATTAA
Found at i:52648 original size:17 final size:16
Alignment explanation
Indices: 52607--52650 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
52597 ATATATTAAA
52607 GATTATA-TATAGTTT
1 GATTATATTATAGTTT
*
52622 TATTATATTATAGTTT
1 GATTATATTATAGTTT
52638 GATTAATATTATA
1 GATT-ATATTATA
52651 TAACTTTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 6 0.24
16 11 0.44
17 8 0.32
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (16 bp):
GATTATATTATAGTTT
Found at i:52749 original size:14 final size:13
Alignment explanation
Indices: 52668--52752 Score: 50
Period size: 13 Copynumber: 6.2 Consensus size: 13
52658 TAATTTTTAT
*
52668 TTAATTATTACTAA
1 TTAATTA-TAATAA
*
52682 TT-ATTATTGATAA
1 TTAATTA-TAATAA
52695 -TAATTTATAATATA
1 TTAA-TTATAATA-A
*
52709 TTAA-TACTACCTAA
1 TTAATTA-TA-ATAA
52723 TTAATTATAATAA
1 TTAATTATAATAA
*
52736 TTAGTTACTAATAA
1 TTAATTA-TAATAA
52750 TTA
1 TTA
52753 TTAAATTGTT
Statistics
Matches: 57, Mismatches: 6, Indels: 16
0.72 0.08 0.20
Matches are distributed among these distances:
12 1 0.02
13 25 0.44
14 24 0.42
15 7 0.12
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.47
Consensus pattern (13 bp):
TTAATTATAATAA
Found at i:52802 original size:14 final size:14
Alignment explanation
Indices: 52785--52926 Score: 52
Period size: 14 Copynumber: 10.4 Consensus size: 14
52775 ATTTTTGACA
*
52785 ATTAATATATTATT
1 ATTAATATATAATT
52799 ATTAATATATAATT
1 ATTAATATATAATT
* * * * *
52813 AATATTTTTTAAAT
1 ATTAATATATAATT
52827 ATT-ATA-ATTAATT
1 ATTAATATA-TAATT
*
52840 ACTTAATATTTAATT
1 A-TTAATATATAATT
*
52855 AAT-AT-TA-AATGT
1 ATTAATATATAAT-T
*
52867 ATTAATATA-ATTT
1 ATTAATATATAATT
* *
52880 AATAAT-TA-ATTT
1 ATTAATATATAATT
*
52892 A-TACTATATAATTT
1 ATTAATATATAA-TT
52906 ATTAAT-TATAAATGT
1 ATTAATATAT-AAT-T
52921 ATTAAT
1 ATTAAT
52927 TTTTATCTAT
Statistics
Matches: 95, Mismatches: 20, Indels: 25
0.68 0.14 0.18
Matches are distributed among these distances:
11 6 0.06
12 13 0.14
13 17 0.18
14 38 0.40
15 21 0.22
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (14 bp):
ATTAATATATAATT
Found at i:52813 original size:42 final size:42
Alignment explanation
Indices: 52775--52860 Score: 106
Period size: 42 Copynumber: 2.1 Consensus size: 42
52765 TAAATTATTA
52775 ATTTTTGACAATTAATAT-ATT-ATTA-TTAATATATAATTAAT
1 ATTTTTGA-AA-TAATATAATTAATTACTTAATATATAATTAAT
* * *
52816 ATTTTTTAAATATTATAATTAATTACTTAATATTTAATTAAT
1 ATTTTTGAAATAATATAATTAATTACTTAATATATAATTAAT
52858 ATT
1 ATT
52861 AAATGTATTA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
39 5 0.13
40 5 0.13
41 11 0.28
42 18 0.46
ACGTcount: A:0.43, C:0.02, G:0.01, T:0.53
Consensus pattern (42 bp):
ATTTTTGAAATAATATAATTAATTACTTAATATATAATTAAT
Found at i:52860 original size:11 final size:11
Alignment explanation
Indices: 52784--52860 Score: 54
Period size: 11 Copynumber: 6.9 Consensus size: 11
52774 AATTTTTGAC
52784 AATTAATATATT
1 AATTAATAT-TT
*
52796 ATTATTAATATAT
1 A--ATTAATATTT
52809 AATTAATATTT
1 AATTAATATTT
*
52820 -TTTAAATATTAT
1 AATT-AATATT-T
52832 AATT-A-A-TT
1 AATTAATATTT
*
52840 ACTTAATATTT
1 AATTAATATTT
52851 AATTAATATT
1 AATTAATATT
52861 AAATGTATTA
Statistics
Matches: 51, Mismatches: 6, Indels: 17
0.69 0.08 0.23
Matches are distributed among these distances:
8 4 0.08
9 2 0.04
10 4 0.08
11 27 0.53
12 2 0.04
13 4 0.08
14 8 0.16
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.53
Consensus pattern (11 bp):
AATTAATATTT
Found at i:52882 original size:29 final size:29
Alignment explanation
Indices: 52847--52926 Score: 75
Period size: 26 Copynumber: 2.9 Consensus size: 29
52837 ATTACTTAAT
52847 ATTTAATTAATATTAAATGTATTAATATA
1 ATTTAATTAATATTAAATGTATTAATATA
*
52876 ATTTAA-T-A-ATT-AATTTA-TACTATATA
1 ATTTAATTAATATTAAATGTATTA--ATATA
52902 ATTT-ATTAAT-TATAAATGTATTAAT
1 ATTTAATTAATAT-TAAATGTATTAAT
52927 TTTTATCTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 17
0.68 0.03 0.28
Matches are distributed among these distances:
24 2 0.05
25 6 0.15
26 13 0.32
27 3 0.07
28 4 0.10
29 11 0.27
30 2 0.05
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (29 bp):
ATTTAATTAATATTAAATGTATTAATATA
Found at i:53157 original size:23 final size:22
Alignment explanation
Indices: 53124--53207 Score: 91
Period size: 23 Copynumber: 3.8 Consensus size: 22
53114 TCTTATTTAC
*
53124 TATAATATATATTATCTATATA
1 TATAATATATATTATATATATA
*
53146 TATAATTATATATTATATATAAA
1 TATAA-TATATATTATATATATA
*
53169 TA-AAT-TATTATTATATTTATGA
1 TATAATATA-TATTATATATAT-A
*
53191 AATAATATATATTATAT
1 TATAATATATATTATAT
53208 TATTAATTAT
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
20 2 0.04
21 11 0.21
22 9 0.17
23 28 0.54
24 2 0.04
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (22 bp):
TATAATATATATTATATATATA
Found at i:53164 original size:21 final size:21
Alignment explanation
Indices: 53124--53218 Score: 83
Period size: 21 Copynumber: 4.5 Consensus size: 21
53114 TCTTATTTAC
53124 TATAA-TATATATTATCTATATA
1 TATAATTATATATTA--TATATA
53146 TATAATTATATATTATATATA
1 TATAATTATATATTATATATA
* *
53167 AATAAATTAT-TATTATATTTA
1 TAT-AATTATATATTATATATA
53188 TGA-AATAATATATATTATAT-TA
1 T-ATAAT--TATATATTATATATA
53210 T-TAATTATA
1 TATAATTATA
53219 AATAATTTTT
Statistics
Matches: 63, Mismatches: 3, Indels: 17
0.76 0.04 0.20
Matches are distributed among these distances:
19 4 0.06
20 3 0.05
21 21 0.33
22 18 0.29
23 17 0.27
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (21 bp):
TATAATTATATATTATATATA
Found at i:53181 original size:28 final size:28
Alignment explanation
Indices: 53150--53224 Score: 84
Period size: 28 Copynumber: 2.7 Consensus size: 28
53140 TATATATATA
*
53150 ATTATATATTATATATAA-ATAAATTATT
1 ATTATATATTATAAATAATATAAATTA-T
*
53178 ATTATAT-TTATGAAATAATATATATTAT
1 ATTATATATTAT-AAATAATATAAATTAT
53206 ATTAT-TAATTATAAATAAT
1 ATTATAT-ATTATAAATAAT
53225 TTTTTATAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
27 5 0.12
28 25 0.61
29 11 0.27
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (28 bp):
ATTATATATTATAAATAATATAAATTAT
Found at i:53453 original size:23 final size:23
Alignment explanation
Indices: 53392--53458 Score: 61
Period size: 23 Copynumber: 3.0 Consensus size: 23
53382 ATATATAATT
*
53392 ATTATTAAT-TAATATTTTAT-A
1 ATTATTAATATAATATATTATAA
53413 ATTAGTT--TATAATTTATATTATAA
1 ATTA-TTAATATAA--TATATTATAA
*
53437 ATTATTAATATAATATAATATA
1 ATTATTAATATAATATATTATA
53459 TTATGATTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 12
0.73 0.04 0.24
Matches are distributed among these distances:
20 1 0.03
21 7 0.19
22 2 0.05
23 17 0.46
24 5 0.14
25 5 0.14
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.52
Consensus pattern (23 bp):
ATTATTAATATAATATATTATAA
Found at i:53646 original size:17 final size:17
Alignment explanation
Indices: 53626--53681 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 17
53616 AGCATAGTAA
53626 TATAAATAAATTATTAT
1 TATAAATAAATTATTAT
** *
53643 TATATTTAACTTATTAT
1 TATAAATAAATTATTAT
53660 TAT-AATAAGATTAATTAT
1 TATAAATAA-ATT-ATTAT
53678 TATA
1 TATA
53682 TTATATAATA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
16 3 0.10
17 19 0.63
18 8 0.27
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (17 bp):
TATAAATAAATTATTAT
Found at i:53713 original size:17 final size:16
Alignment explanation
Indices: 53693--53731 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
53683 TATATAATAT
*
53693 TTTATTTTAAATGATTA
1 TTTAATTTAAAT-ATTA
*
53710 TTTAATTTATATATTA
1 TTTAATTTAAATATTA
53726 TTTAAT
1 TTTAAT
53732 GTTATTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
TTTAATTTAAATATTA
Found at i:53860 original size:15 final size:16
Alignment explanation
Indices: 53803--53862 Score: 63
Period size: 15 Copynumber: 3.8 Consensus size: 16
53793 AATCATTGTT
53803 ATTAATTAATATTAGTTA
1 ATTAATTAATA-TAG-TA
*
53821 ATTTATTAAT-TAGTAA
1 ATTAATTAATATAGT-A
53837 ATTAA-TAATATA-TA
1 ATTAATTAATATAGTA
53851 ATTAATTAATAT
1 ATTAATTAATAT
53863 TTAATTTAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
14 6 0.16
15 12 0.32
16 10 0.27
18 9 0.24
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (16 bp):
ATTAATTAATATAGTA
Found at i:53867 original size:15 final size:14
Alignment explanation
Indices: 53804--53874 Score: 54
Period size: 15 Copynumber: 4.8 Consensus size: 14
53794 ATCATTGTTA
*
53804 TTAATTAATATTAG
1 TTAATTAATAATAG
*
53818 TTAATTTATTAATTAG
1 TTAA-TTAATAA-TAG
*
53834 TAAATTAATAATA-
1 TTAATTAATAATAG
*
53847 TATAATTAATTAATAT
1 T-TAATTAA-TAATAG
53863 TTAATTTAATAA
1 TTAA-TTAATAA
53875 ATTAGTGTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
13 1 0.02
14 12 0.26
15 22 0.48
16 11 0.24
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (14 bp):
TTAATTAATAATAG
Found at i:54126 original size:16 final size:15
Alignment explanation
Indices: 54105--54139 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
54095 TTAATAATTT
54105 TATAATAATCAAATAG
1 TATAATAATCAAAT-G
*
54121 TATAATAATTAAATG
1 TATAATAATCAAATG
54136 TATA
1 TATA
54140 TGTGAATAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.37
Consensus pattern (15 bp):
TATAATAATCAAATG
Found at i:54176 original size:15 final size:16
Alignment explanation
Indices: 54151--54181 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
54141 GTGAATAGTC
54151 TATTGAATCAATAATT
1 TATTGAATCAATAATT
54167 TATT-AATCAATAATT
1 TATTGAATCAATAATT
54182 AAAATATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.45
Consensus pattern (16 bp):
TATTGAATCAATAATT
Found at i:54304 original size:28 final size:29
Alignment explanation
Indices: 54273--54330 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
54263 ATATCGACAA
54273 TTAAATA-ATAAAAATT-AAATATTTTAAT
1 TTAAATATATAAAAATTAAAAT-TTTTAAT
* *
54301 TTAAATATTTAAAATTTAAAATTTTTAAT
1 TTAAATATATAAAAATTAAAATTTTTAAT
54330 T
1 T
54331 ATTAACATTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 7 0.27
29 15 0.58
30 4 0.15
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (29 bp):
TTAAATATATAAAAATTAAAATTTTTAAT
Found at i:54311 original size:13 final size:14
Alignment explanation
Indices: 54287--54330 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
54277 ATAATAAAAA
54287 TTAAATATTTTAAT
1 TTAAATATTTTAAT
*
54301 TTAAATATTTAAAAT
1 TTAAATATTT-TAAT
54316 TTAAA-ATTTTTAAT
1 TTAAATA-TTTTAAT
54330 T
1 T
54331 ATTAACATTC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 15 0.58
15 11 0.42
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TTAAATATTTTAAT
Found at i:54335 original size:23 final size:24
Alignment explanation
Indices: 54300--54344 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
54290 AATATTTTAA
*
54300 TTTAAATATTTAAAATTTAAAATT
1 TTTAAATATTTAAAATTCAAAATT
* *
54324 TTTAATTA-TTAACATTCAAAA
1 TTTAAATATTTAAAATTCAAAA
54345 AATTAGTAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 11 0.61
24 7 0.39
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (24 bp):
TTTAAATATTTAAAATTCAAAATT
Found at i:54929 original size:22 final size:21
Alignment explanation
Indices: 54873--54939 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 21
54863 ATATATATAA
*
54873 TATATTAATGTATAATTATAATT
1 TATATTAAT-TATAA-AATAATT
* *
54896 TATATGATTTATAAGAATAATT
1 TATATTAATTATAA-AATAATT
*
54918 TGTATTAATTATTAAAATAATT
1 TATATTAATTA-TAAAATAATT
54940 AACTATTATA
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
22 26 0.72
23 10 0.28
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (21 bp):
TATATTAATTATAAAATAATT
Found at i:55177 original size:14 final size:14
Alignment explanation
Indices: 55158--55184 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
55148 ATAAACTTAT
55158 TGATCAAATTATTG
1 TGATCAAATTATTG
55172 TGATCAAATTATT
1 TGATCAAATTATT
55185 ACTAAATACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.07, G:0.11, T:0.44
Consensus pattern (14 bp):
TGATCAAATTATTG
Found at i:56202 original size:22 final size:22
Alignment explanation
Indices: 56168--56257 Score: 68
Period size: 22 Copynumber: 4.2 Consensus size: 22
56158 TTAATTATTG
56168 ATTA-AATAATTATATTTATAAT
1 ATTATAAT-ATTATATTTATAAT
56190 ATTATTAAT-TTATA--TATAAT
1 ATTA-TAATATTATATTTATAAT
* *
56210 A-TATAATATTATAATTAAAAT
1 ATTATAATATTATATTTATAAT
*
56231 AGTATAATAATTA-ATTTA-AATT
1 ATTATAAT-ATTATATTTATAA-T
56253 ATTAT
1 ATTAT
56258 TAAATAATTT
Statistics
Matches: 57, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
18 4 0.07
19 7 0.12
20 7 0.12
21 8 0.14
22 24 0.42
23 4 0.07
24 3 0.05
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (22 bp):
ATTATAATATTATATTTATAAT
Found at i:56349 original size:15 final size:16
Alignment explanation
Indices: 56322--56351 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
56312 TAGAAATTAT
56322 TATAAATTAATAATAG
1 TATAAATTAATAATAG
56338 TATAAA-TAATAATA
1 TATAAATTAATAATA
56352 TAAATTATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (16 bp):
TATAAATTAATAATAG
Found at i:56539 original size:21 final size:21
Alignment explanation
Indices: 56513--56567 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
56503 ACATATTATT
56513 TTATTATAATAATAAAAATTA
1 TTATTATAATAATAAAAATTA
* * *
56534 TTATTATTATTATAATAATTA
1 TTATTATAATAATAAAAATTA
* *
56555 TTAATATACTAAT
1 TTATTATAATAAT
56568 TAAATAACAA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
TTATTATAATAATAAAAATTA
Found at i:56556 original size:15 final size:15
Alignment explanation
Indices: 56536--56569 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
56526 AAAAATTATT
*
56536 ATTATTATTATAATA
1 ATTATTAATATAATA
*
56551 ATTATTAATATACTA
1 ATTATTAATATAATA
56566 ATTA
1 ATTA
56570 AATAACAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (15 bp):
ATTATTAATATAATA
Found at i:56557 original size:24 final size:23
Alignment explanation
Indices: 56494--56557 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 23
56484 ATAAATGGTC
*
56494 ATAATATTAACATATTATTTTATT
1 ATAATAATAA-ATATTATTTTATT
*
56518 ATAATAATAAAAATTATTATTATT
1 ATAATAATAAATATTATT-TTATT
* *
56542 ATTATAATAATTATTA
1 ATAATAATAAATATTA
56558 ATATACTAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
23 7 0.21
24 27 0.79
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (23 bp):
ATAATAATAAATATTATTTTATT
Found at i:56790 original size:21 final size:21
Alignment explanation
Indices: 56766--56812 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
56756 ATAATCACAA
56766 ATAATAT-TGTTATGAACAATT
1 ATAATATCTGTTATGAA-AATT
**
56787 ATAAT-TCTGTTATTTAAATT
1 ATAATATCTGTTATGAAAATT
56807 ATAATA
1 ATAATA
56813 ATCTAGTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.47
Consensus pattern (21 bp):
ATAATATCTGTTATGAAAATT
Found at i:56963 original size:17 final size:17
Alignment explanation
Indices: 56943--56979 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
56933 TTTAAACATT
*
56943 ATAATAATTATTTTATA
1 ATAATAACTATTTTATA
*
56960 ATAATAACTGTTTTATA
1 ATAATAACTATTTTATA
56977 ATA
1 ATA
56980 TTATTAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (17 bp):
ATAATAACTATTTTATA
Found at i:57554 original size:18 final size:19
Alignment explanation
Indices: 57531--57573 Score: 70
Period size: 18 Copynumber: 2.3 Consensus size: 19
57521 TAATTCAATA
57531 TAATATGAATATTATATG-
1 TAATATGAATATTATATGT
*
57549 TAATATTAATATTATATGT
1 TAATATGAATATTATATGT
57568 TAATAT
1 TAATAT
57574 TATCATAAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 17 0.74
19 6 0.26
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (19 bp):
TAATATGAATATTATATGT
Found at i:60227 original size:24 final size:26
Alignment explanation
Indices: 60200--60255 Score: 66
Period size: 24 Copynumber: 2.3 Consensus size: 26
60190 TTTATTTTTG
60200 TAATATTAACTA-ATCAA-TTAATTA
1 TAATATTAACTATATCAATTTAATTA
*
60224 TAAT-TT-ATTATATCAATTTAATTA
1 TAATATTAACTATATCAATTTAATTA
*
60248 TACTATTA
1 TAATATTA
60256 TTTATTAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
22 3 0.12
23 7 0.27
24 14 0.54
25 2 0.08
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (26 bp):
TAATATTAACTATATCAATTTAATTA
Found at i:60407 original size:23 final size:22
Alignment explanation
Indices: 60381--60441 Score: 59
Period size: 23 Copynumber: 2.7 Consensus size: 22
60371 TATTTTTAAT
*
60381 AATAATATATAAATATTTAATAA
1 AATAATATATAAATATAT-ATAA
* *
60404 AATATTATTTAAATATATATAA
1 AATAATATATAAATATATATAA
**
60426 TCTAATATATATAATA
1 AATAATATATA-AATA
60442 ATCTAATTAT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
22 11 0.37
23 19 0.63
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
AATAATATATAAATATATATAA
Found at i:60456 original size:17 final size:17
Alignment explanation
Indices: 60416--60452 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
60406 TATTATTTAA
60416 ATATAT-ATAATCTAAT
1 ATATATAATAATCTAAT
60432 ATATATAATAATCTAAT
1 ATATATAATAATCTAAT
60449 -TATA
1 ATATA
60453 ATAAGGTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.43
Consensus pattern (17 bp):
ATATATAATAATCTAAT
Found at i:61146 original size:23 final size:23
Alignment explanation
Indices: 61089--61141 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
61079 AATAACTTTT
*
61089 TATTT-ATATTATTATTATATAAA
1 TATTTAATA-TATTATAATATAAA
61112 TATTTAATATATTATAATAT-AA
1 TATTTAATATATTATAATATAAA
61134 T-TTTAATA
1 TATTTAATA
61142 AATATATTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 7 0.25
22 3 0.11
23 15 0.54
24 3 0.11
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
TATTTAATATATTATAATATAAA
Found at i:61310 original size:29 final size:27
Alignment explanation
Indices: 61278--61342 Score: 64
Period size: 26 Copynumber: 2.4 Consensus size: 27
61268 GGTAACTAAC
*
61278 ATTATAATATTATATTTATAATAATTAAT
1 ATTATAATATT-TATTAAT-ATAATTAAT
* *
61307 ATTA-ATTAATTATTAATATAATTAAT
1 ATTATAATATTTATTAATATAATTAAT
61333 A--ATAATATTT
1 ATTATAATATTT
61343 GAATTACTCT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
24 1 0.03
25 5 0.17
26 10 0.33
27 6 0.20
28 4 0.13
29 4 0.13
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (27 bp):
ATTATAATATTTATTAATATAATTAAT
Found at i:61323 original size:21 final size:22
Alignment explanation
Indices: 61280--61340 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 22
61270 TAACTAACAT
*
61280 TATAATATTATATTTATAATAA
1 TATAATATTATATTAATAATAA
61302 T-TAATATTA-ATTAAT--T-A
1 TATAATATTATATTAATAATAA
61319 T-TAATA-TA-ATTAATAATAA
1 TATAATATTATATTAATAATAA
61338 TAT
1 TAT
61341 TTGAATTACT
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
16 8 0.24
17 7 0.21
18 2 0.06
19 2 0.06
20 6 0.18
21 8 0.24
22 1 0.03
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
TATAATATTATATTAATAATAA
Found at i:61739 original size:16 final size:16
Alignment explanation
Indices: 61719--61763 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
61709 TATTGTTATA
61719 GTTATATTAATTATTT
1 GTTATATTAATTATTT
* *
61735 TTTATATAAATTATTT
1 GTTATATTAATTATTT
61751 GTTA-A-TAATTATT
1 GTTATATTAATTATT
61764 AATATTAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
14 7 0.28
15 1 0.04
16 17 0.68
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (16 bp):
GTTATATTAATTATTT
Found at i:62301 original size:20 final size:18
Alignment explanation
Indices: 62276--62320 Score: 63
Period size: 20 Copynumber: 2.4 Consensus size: 18
62266 AATAAATTAC
62276 TATTAATAAATAATAATATT
1 TATTAATAAATAAT-A-ATT
*
62296 TATTAATTAATAATAATT
1 TATTAATAAATAATAATT
62314 TATTAAT
1 TATTAAT
62321 TTAAATTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 10 0.42
19 1 0.04
20 13 0.54
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TATTAATAAATAATAATT
Done.