Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168501.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_98, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 90112
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
File 3 of 3
Found at i:62824 original size:179 final size:181
Alignment explanation
Indices: 62416--62861 Score: 453
Period size: 179 Copynumber: 2.5 Consensus size: 181
62406 AAAATAATTT
* * * ** * * * *
62416 AAACAATTGTTTTATGACAAAACAAAAATTCATAATGATTTGAAATAGATAATTGTTTAAATGGC
1 AAACAATTATTTTATGATAAAATAAAAGGTCAAAATAATTTGAAATAGATAATTGTTTAAATAGT
* *
62481 CAAAATTATTTGAGCTGATTCGATAAACTGATTTATGTTTTAAATCTCTAACTTATCAATTTTTA
66 CAAAAATATTTGAACTGATTCGATAAACTGATTTATGTTTTAAATCTCTAACTTATCAATTTTTA
* * *
62546 TAATATTAATAAAGTAATATTATTTTATTTAAGATAAGCTTTTATGAACTG
131 TAATATTAATAAAGTAATAGTATTTTATTTAAGATAAGCATGTATGAACTG
* * * *
62597 AAACAATTATTTTATGATAAAATATAAGGTCATAATGATTTTAAATAGATAATTGTTTAAATAGT
1 AAACAATTATTTTATGATAAAATAAAAGGTCAAAATAATTTGAAATAGATAATTGTTTAAATAGT
* * *
62662 CAAAAATATTTGAACTTG-TTCGGTAAA-TAGATTT-T-TTTCT-AATTTCTTACTTAAT-AATT
66 CAAAAATATTTGAAC-TGATTCGATAAACT-GATTTATGTTT-TAAATCTCTAACTT-ATCAATT
* * * * **
62721 TTCTA-AATGTTAATAAATTAGTAGTATTTTATTT-TGAATAAGCATGTATGAGTTG
127 TT-TATAATATTAATAAAGTAATAGTATTTTATTTAAG-ATAAGCATGTATGAACTG
* *
62776 AAGCAATTATTTTTTGACT-AAATAAAAGGTCAAAATAATTTGAAATAGATAATTGTTCT-AATA
1 AAACAATTATTTTATGA-TAAAATAAAAGGTCAAAATAATTTGAAATAGATAATTGTT-TAAATA
** * *
62839 GTCTTAACTATTTAAACTGATTC
64 GTCAAAAATATTTGAACTGATTC
62862 AGCAAACAAT
Statistics
Matches: 223, Mismatches: 33, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
178 3 0.01
179 127 0.57
180 9 0.04
181 82 0.37
182 2 0.01
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.42
Consensus pattern (181 bp):
AAACAATTATTTTATGATAAAATAAAAGGTCAAAATAATTTGAAATAGATAATTGTTTAAATAGT
CAAAAATATTTGAACTGATTCGATAAACTGATTTATGTTTTAAATCTCTAACTTATCAATTTTTA
TAATATTAATAAAGTAATAGTATTTTATTTAAGATAAGCATGTATGAACTG
Found at i:62906 original size:13 final size:12
Alignment explanation
Indices: 62879--62911 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
62869 AATAATTATA
62879 ATTAT-TAAATT
1 ATTATATAAATT
62890 ATTATATAAATTT
1 ATTATATAAA-TT
62903 ATTATATAA
1 ATTATATAA
62912 TAACATAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 5 0.25
12 4 0.20
13 11 0.55
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
ATTATATAAATT
Found at i:62969 original size:14 final size:14
Alignment explanation
Indices: 62950--62976 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
62940 TAATTATAAC
62950 ATAATTAAATTATT
1 ATAATTAAATTATT
62964 ATAATTAAATTAT
1 ATAATTAAATTAT
62977 AATATGTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
ATAATTAAATTATT
Found at i:63052 original size:22 final size:21
Alignment explanation
Indices: 63022--63163 Score: 77
Period size: 22 Copynumber: 6.8 Consensus size: 21
63012 TTTATTACTA
*
63022 TATT-TAATAATTAACTTTTAT
1 TATTATAATAATTAA-TTATAT
63043 TATTATAATAAACTTATAGTTATAT
1 TATTATAAT-AA-TTA-A-TTATAT
*
63068 TATTTTAATAATATAATTATAT
1 TATTATAATAAT-TAATTATAT
*
63090 TATAAT-A-AATTAA-TA-AT
1 TATTATAATAATTAATTATAT
* *
63107 TATTATATTAA-TAA-TAAAT
1 TATTATAATAATTAATTATAT
*
63126 TAATAT-A-AATTAATTATTAT
1 TATTATAATAATTAATTA-TAT
*
63146 AATTAATAATAATATAAT
1 TATT-ATAATAAT-TAAT
63164 ATTACTATAT
Statistics
Matches: 94, Mismatches: 12, Indels: 27
0.71 0.09 0.20
Matches are distributed among these distances:
17 9 0.10
18 10 0.11
19 14 0.15
20 7 0.07
21 7 0.07
22 15 0.16
23 7 0.07
24 11 0.12
25 14 0.15
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (21 bp):
TATTATAATAATTAATTATAT
Found at i:63095 original size:19 final size:19
Alignment explanation
Indices: 63068--63163 Score: 60
Period size: 19 Copynumber: 4.9 Consensus size: 19
63058 ATAGTTATAT
*
63068 TATTTTAATAATATAATTA
1 TATTATAATAATATAATTA
63087 TATTATAATAAATTAATAATTA
1 TATTATAAT-AA-T-ATAATTA
63109 T-TATATTAATAATA-AATTA
1 TAT-TA-TAATAATATAATTA
63128 -A-TATAAATTAAT-T-ATTA
1 TATTAT-AA-TAATATAATTA
63145 TAATTAATAATAATATAAT
1 T-ATT-ATAATAATATAAT
63164 ATTACTATAT
Statistics
Matches: 61, Mismatches: 1, Indels: 28
0.68 0.01 0.31
Matches are distributed among these distances:
16 1 0.02
17 8 0.13
18 4 0.07
19 18 0.30
20 7 0.11
21 7 0.11
22 12 0.20
23 4 0.07
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
TATTATAATAATATAATTA
Found at i:63112 original size:42 final size:41
Alignment explanation
Indices: 63042--63172 Score: 112
Period size: 36 Copynumber: 3.2 Consensus size: 41
63032 TTAACTTTTA
*
63042 TTATTATAATAAACTT-ATAGTTATATTATTTTAATAATATAAT
1 TTATTATAATAAA-TTAATA-AT-TATTATTTTAATAATATAAT
*
63085 TATATTATAATAAATTAATAATTATTATATTAATAATA-AA-
1 T-TATTATAATAAATTAATAATTATTATTTTAATAATATAAT
* * *
63125 TTA--AT-ATAAATTAATTATTATAATTAATAATAATATAAT
1 TTATTATAATAAATTAATAATTATTATT-TTAATAATATAAT
*
63164 ATTACTATA
1 -TTATTATA
63173 TCTTAGTTAT
Statistics
Matches: 73, Mismatches: 6, Indels: 18
0.75 0.06 0.19
Matches are distributed among these distances:
36 17 0.23
37 10 0.14
38 2 0.03
39 2 0.03
40 4 0.05
41 2 0.03
42 17 0.23
43 4 0.05
44 15 0.21
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.47
Consensus pattern (41 bp):
TTATTATAATAAATTAATAATTATTATTTTAATAATATAAT
Found at i:63137 original size:26 final size:25
Alignment explanation
Indices: 63076--63167 Score: 93
Period size: 26 Copynumber: 3.7 Consensus size: 25
63066 ATTATTTTAA
63076 TAATAT-AATTATATTATAATAAAT
1 TAATATAAATTATATTATAATAAAT
*
63100 TAATA-ATTATTATATTAATAATAAAT
1 TAATATA-AATTATATT-ATAATAAAT
*
63126 TAATATAAATTA-ATTATTAT-AAT
1 TAATATAAATTATATTATAATAAAT
*
63149 TAATAATAATATAATATTA
1 TAAT-ATAA-ATTATATTA
63168 CTATATCTTA
Statistics
Matches: 57, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
23 7 0.12
24 13 0.23
25 14 0.25
26 22 0.39
27 1 0.02
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (25 bp):
TAATATAAATTATATTATAATAAAT
Found at i:63632 original size:20 final size:21
Alignment explanation
Indices: 63607--63651 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
63597 TATAATTATC
63607 ATTATAATTAA-TAT-TATATA
1 ATTATAATTAACTATATA-ATA
63627 ATTATAATTAACTATATAATA
1 ATTATAATTAACTATATAATA
63648 ATTA
1 ATTA
63652 ATTAATTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 11 0.48
21 10 0.43
22 2 0.09
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (21 bp):
ATTATAATTAACTATATAATA
Found at i:63873 original size:23 final size:21
Alignment explanation
Indices: 63826--63878 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 21
63816 TTAAGTTAAC
63826 TTAAAT-ATATAAATTTATAA
1 TTAAATAATATAAATTTATAA
* *
63846 GTAAATAATATTAGAATTTATAT
1 TTAAATAATA-TA-AATTTATAA
63869 TTAAAATAAT
1 TT-AAATAAT
63879 TGATATTAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 5 0.19
21 3 0.12
22 2 0.08
23 9 0.35
24 7 0.27
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (21 bp):
TTAAATAATATAAATTTATAA
Found at i:64823 original size:15 final size:16
Alignment explanation
Indices: 64798--64836 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
64788 TATTATTTGA
64798 AATAGTTATTAATA-TT
1 AATA-TTATTAATAGTT
64814 AATATTATTAATAGTT
1 AATATTATTAATAGTT
64830 AA-ATTAT
1 AATATTAT
64837 ATATTATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 14 0.64
16 8 0.36
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (16 bp):
AATATTATTAATAGTT
Found at i:64831 original size:22 final size:21
Alignment explanation
Indices: 64806--64847 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
64796 GAAATAGTTA
64806 TTAATATTA-ATATTATTAATAG
1 TTAA-ATTATATATTA-TAATAG
64828 TTAAATTATATATTATAATA
1 TTAAATTATATATTATAATA
64848 AAAGTACAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (21 bp):
TTAAATTATATATTATAATAG
Found at i:65286 original size:18 final size:17
Alignment explanation
Indices: 65265--65298 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
65255 CATTTATTAA
*
65265 TATAATCTAATTTAATAG
1 TATAATC-AAATTAATAG
65283 TATAATCAAATTAATA
1 TATAATCAAATTAATA
65299 ATCTGATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (17 bp):
TATAATCAAATTAATAG
Found at i:65361 original size:36 final size:36
Alignment explanation
Indices: 65332--65404 Score: 103
Period size: 36 Copynumber: 2.0 Consensus size: 36
65322 TATATTTTAT
65332 TATATAAA-TAAAAATTATTAATAATATATAATATTA
1 TATATAAATTAAAAA-TATTAATAATATATAATATTA
*
65368 TATATAAATTAATAATATTAATAATATAATTAATATT
1 TATATAAATTAAAAATATTAATAATAT-A-TAATATT
65405 TGATTGATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
36 20 0.61
37 6 0.18
38 7 0.21
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (36 bp):
TATATAAATTAAAAATATTAATAATATATAATATTA
Found at i:65389 original size:9 final size:9
Alignment explanation
Indices: 65347--65464 Score: 64
Period size: 9 Copynumber: 12.4 Consensus size: 9
65337 AAATAAAAAT
65347 TATTAATAA
1 TATTAATAA
65356 TA-T-ATAA
1 TATTAATAA
65363 TATTATATATA
1 TATTA-ATA-A
*
65374 AATTAATAA
1 TATTAATAA
65383 TATTAATAA
1 TATTAATAA
65392 TA-TAATTAA
1 TATTAA-TAA
* *
65401 TATTTGATTGA
1 TA-TT-AATAA
65412 TATTTAAT-A
1 TA-TTAATAA
65421 TATTAAAATAA
1 TATT--AATAA
*
65432 TATAAATAGA
1 TATTAATA-A
*
65442 TAATAATTAA
1 TATTAA-TAA
*
65452 TATTACTAA
1 TATTAATAA
65461 TATT
1 TATT
65465 CACATAAGTA
Statistics
Matches: 86, Mismatches: 10, Indels: 26
0.70 0.08 0.21
Matches are distributed among these distances:
7 6 0.07
8 7 0.08
9 32 0.37
10 21 0.24
11 19 0.22
12 1 0.01
ACGTcount: A:0.52, C:0.01, G:0.03, T:0.45
Consensus pattern (9 bp):
TATTAATAA
Found at i:65668 original size:26 final size:26
Alignment explanation
Indices: 65622--65676 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
65612 ATTTGATTAC
* *
65622 TAAATCATATAGTCTTAAATATTATA
1 TAAATCATATAGTATTAAATAATATA
*
65648 TAAATCATA-ATTATTATAATAATATA
1 TAAATCATATAGTATTA-AATAATATA
65674 TAA
1 TAA
65677 TAAATTAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (26 bp):
TAAATCATATAGTATTAAATAATATA
Found at i:65681 original size:29 final size:29
Alignment explanation
Indices: 65639--65694 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 29
65629 TATAGTCTTA
65639 AATATTATATAAATC-ATAATTATTATAAT
1 AATATTATATAAATCAAT-ATTATTATAAT
*
65668 AATA-TATAATAAATTAATATTATTATA
1 AATATTAT-ATAAATCAATATTATTATA
65695 CTATAATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 3 0.12
29 19 0.79
30 2 0.08
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (29 bp):
AATATTATATAAATCAATATTATTATAAT
Found at i:66183 original size:16 final size:15
Alignment explanation
Indices: 66121--66186 Score: 73
Period size: 15 Copynumber: 4.3 Consensus size: 15
66111 TATTAACAAT
66121 ATATAAATAATTA-A
1 ATATAAATAATTATA
66135 TATAGTAAAT-ATTATA
1 -ATA-TAAATAATTATA
*
66151 ATATTATATAATTATA
1 ATA-TAAATAATTATA
66167 ATATAAATAATTAATA
1 ATATAAATAATT-ATA
66183 ATAT
1 ATAT
66187 TATTAATATA
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
15 22 0.50
16 22 0.50
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (15 bp):
ATATAAATAATTATA
Found at i:66193 original size:16 final size:16
Alignment explanation
Indices: 66148--66198 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
66138 AGTAAATATT
66148 ATAATATTATATAATT-
1 ATAATATTAT-TAATTA
* *
66164 ATAATATAAATAATTA
1 ATAATATTATTAATTA
66180 ATAATATTATTAATATA
1 ATAATATTATTAAT-TA
66197 AT
1 AT
66199 TGTTATATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 5 0.17
16 20 0.69
17 4 0.14
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
ATAATATTATTAATTA
Found at i:66193 original size:25 final size:23
Alignment explanation
Indices: 66121--66197 Score: 79
Period size: 23 Copynumber: 3.3 Consensus size: 23
66111 TATTAACAAT
*
66121 ATATAAATAATTAATATAGTA-A
1 ATATAAATAATTAATATATTATA
66143 ATATTATAAT-ATT-ATATAATTATA
1 ATA-TA-AATAATTAATAT-ATTATA
66167 ATATAAATAATTAATAATATTATTA
1 ATATAAATAATTAAT-ATATTA-TA
66192 ATATAA
1 ATATAA
66198 TTGTTATATA
Statistics
Matches: 46, Mismatches: 1, Indels: 13
0.77 0.02 0.22
Matches are distributed among these distances:
22 10 0.22
23 13 0.28
24 13 0.28
25 10 0.22
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (23 bp):
ATATAAATAATTAATATATTATA
Found at i:66313 original size:25 final size:25
Alignment explanation
Indices: 66285--66339 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
66275 ATTTGACATG
*
66285 TATATTAT-ATTATAGTTAAATATAA
1 TATATTATAATTATAATTAAA-ATAA
*
66310 TATATTTTAATTATAATTAAAATAA
1 TATATTATAATTATAATTAAAATAA
66335 TATAT
1 TATAT
66340 ATTATTACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 16 0.59
26 11 0.41
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (25 bp):
TATATTATAATTATAATTAAAATAA
Found at i:66351 original size:27 final size:28
Alignment explanation
Indices: 66285--66354 Score: 85
Period size: 26 Copynumber: 2.6 Consensus size: 28
66275 ATTTGACATG
*
66285 TATATTA-TATTATAGTTAAATATAATA
1 TATATTATTATTATAATTAAATATAATA
*
66312 TAT-TT-TAATTATAATTAAA-ATAATA
1 TATATTATTATTATAATTAAATATAATA
*
66337 TATATTATTACTATAATT
1 TATATTATTATTATAATT
66355 GTTTTAATTC
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
25 9 0.25
26 15 0.42
27 12 0.33
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (28 bp):
TATATTATTATTATAATTAAATATAATA
Found at i:66842 original size:18 final size:17
Alignment explanation
Indices: 66819--66875 Score: 59
Period size: 18 Copynumber: 3.5 Consensus size: 17
66809 AAATTAGTTA
66819 ATTAATTAATATATAAAT
1 ATTAATTAATATAT-AAT
*
66837 ATTAATTAAT-TATAGT
1 ATTAATTAATATATAAT
*
66853 ATTAA-TAATA-AT-TT
1 ATTAATTAATATATAAT
66867 ATTAATTAA
1 ATTAATTAA
66876 AATTTATACT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
14 6 0.17
15 9 0.26
16 7 0.20
17 3 0.09
18 10 0.29
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (17 bp):
ATTAATTAATATATAAT
Found at i:66843 original size:22 final size:23
Alignment explanation
Indices: 66816--66872 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 23
66806 ACAAAATTAG
66816 TTAATTAATTAATA-TATAAATA
1 TTAATTAATTAATAGTATAAATA
*
66838 TTAATTAATT-ATAGTATTAATA
1 TTAATTAATTAATAGTATAAATA
* *
66860 ATAATTTATTAAT
1 TTAATTAATTAAT
66873 TAAAATTTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.10
22 25 0.83
23 2 0.07
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (23 bp):
TTAATTAATTAATAGTATAAATA
Found at i:66860 original size:26 final size:22
Alignment explanation
Indices: 66816--66875 Score: 59
Period size: 26 Copynumber: 2.5 Consensus size: 22
66806 ACAAAATTAG
66816 TTAATTAATTAATATATAA-ATA
1 TTAATTAATTAATATATAATA-A
66838 TTAATTAATTATAGTATTAATAATAA
1 TTAATTAATTA-A-TA-T-ATAATAA
*
66864 TTTATTAATTAA
1 TTAATTAATTAA
66876 AATTTATACT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
22 11 0.34
23 1 0.03
24 2 0.06
25 2 0.06
26 15 0.47
27 1 0.03
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
TTAATTAATTAATATATAATAA
Found at i:67178 original size:22 final size:23
Alignment explanation
Indices: 67146--67189 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
67136 CTATATAAGT
67146 TATTTGTATT-ATATAATAAATAC
1 TATTTGTATTAAT-TAATAAATAC
67169 TATTT-TATTAATTAATAAATA
1 TATTTGTATTAATTAATAAATA
67190 AATTAATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (23 bp):
TATTTGTATTAATTAATAAATAC
Found at i:67368 original size:15 final size:15
Alignment explanation
Indices: 67305--67368 Score: 76
Period size: 15 Copynumber: 4.1 Consensus size: 15
67295 ATCAATGGTT
67305 ATATTATTAAT-TTAA
1 ATATTATTAATATT-A
67320 ATATTATTAATATATTA
1 ATATTATT-A-ATATTA
* *
67337 TTATTATTAATACTA
1 ATATTATTAATATTA
67352 ATATTATTAATATTA
1 ATATTATTAATATTA
67367 AT
1 AT
67369 GTACTAATCG
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
15 28 0.67
16 2 0.05
17 10 0.24
18 2 0.05
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (15 bp):
ATATTATTAATATTA
Found at i:67451 original size:19 final size:19
Alignment explanation
Indices: 67429--67466 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
67419 TATTATATAT
67429 TAATT-ATTATAATGTATTA
1 TAATTGATTA-AATGTATTA
*
67448 TAATTGATTAATTGTATTA
1 TAATTGATTAAATGTATTA
67467 GTTTAATAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (19 bp):
TAATTGATTAAATGTATTA
Found at i:67627 original size:30 final size:30
Alignment explanation
Indices: 67591--67664 Score: 75
Period size: 30 Copynumber: 2.5 Consensus size: 30
67581 TTATACTAAT
* * *
67591 TAATAATAATATTAATTTTTTAAATATTTA
1 TAATAATAATATTAATTATTAAAATAATTA
67621 TAATAAT--TATTAA-TATTAAAATAATTA
1 TAATAATAATATTAATTATTAAAATAATTA
67648 -AATAACATAATATTAAT
1 TAAT-A-ATAATATTAAT
67665 AAAATTTAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
26 3 0.08
27 12 0.33
28 8 0.22
30 13 0.36
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (30 bp):
TAATAATAATATTAATTATTAAAATAATTA
Found at i:67670 original size:24 final size:24
Alignment explanation
Indices: 67631--67687 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
67621 TAATAATTAT
67631 TAATATTAA-AATAATTAAATAACA
1 TAATATTAATAATAATTAAATAA-A
* *
67655 TAATATTAATAA-AATTTAATTAA
1 TAATATTAATAATAATTAAATAAA
67678 TAATA-TAATA
1 TAATATTAATA
67688 TTATAATTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 5 0.17
23 6 0.20
24 17 0.57
25 2 0.07
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (24 bp):
TAATATTAATAATAATTAAATAAA
Found at i:67718 original size:21 final size:24
Alignment explanation
Indices: 67668--67718 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
67658 TATTAATAAA
67668 ATTTAATTAATAATATAATATTAT
1 ATTTAATTAATAATATAATATTAT
*
67692 AATTTAA-TATTAATAT-ATATTAT
1 -ATTTAATTAATAATATAATATTAT
67715 -TTTA
1 ATTTA
67719 TTTGTAATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 4 0.16
23 7 0.28
24 8 0.32
25 6 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (24 bp):
ATTTAATTAATAATATAATATTAT
Found at i:68895 original size:20 final size:19
Alignment explanation
Indices: 68846--68915 Score: 58
Period size: 20 Copynumber: 3.7 Consensus size: 19
68836 ATATTTTATT
*
68846 ATAAATATATAATCATTAA
1 ATAAATATATAATTATTAA
*
68865 ATAGATTATATAATTACTT-A
1 ATA-AATATATAATTA-TTAA
68885 ATAAATA-AT-ATTATTAA
1 ATAAATATATAATTATTAA
*
68902 AGT-TATATATAATT
1 A-TAAATATATAATT
68916 TATAATATAT
Statistics
Matches: 41, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
16 2 0.05
17 9 0.22
18 5 0.12
19 9 0.22
20 14 0.34
21 2 0.05
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (19 bp):
ATAAATATATAATTATTAA
Found at i:69016 original size:19 final size:16
Alignment explanation
Indices: 68992--69036 Score: 58
Period size: 15 Copynumber: 2.8 Consensus size: 16
68982 TATAATTTAG
68992 ATATA-AATTAATTAATA
1 ATATATAATT-ATT-ATA
69009 ATATATAATTATTATA
1 ATATATAATTATTATA
69025 ATAT-TAATTATT
1 ATATATAATTATT
69037 TAAATTTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
15 8 0.30
16 7 0.26
17 8 0.30
18 4 0.15
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
ATATATAATTATTATA
Found at i:69019 original size:14 final size:14
Alignment explanation
Indices: 68992--69072 Score: 62
Period size: 14 Copynumber: 5.7 Consensus size: 14
68982 TATAATTTAG
68992 ATATAA-ATTAATT
1 ATATAATATTAATT
69005 A-ATAATATATAATT
1 ATATAATAT-TAATT
69019 ATTATAATATTAATT
1 A-TATAATATTAATT
* *
69034 ATTTAA-ATTTATACT
1 ATATAATA-TTA-ATT
*
69049 ATATAAAATT-ATT
1 ATATAATATTAATT
69062 ATTATAATATT
1 A-TATAATATT
69073 TTAAATTATA
Statistics
Matches: 55, Mismatches: 5, Indels: 15
0.73 0.07 0.20
Matches are distributed among these distances:
12 4 0.07
13 7 0.13
14 21 0.38
15 15 0.27
16 8 0.15
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (14 bp):
ATATAATATTAATT
Found at i:69067 original size:21 final size:21
Alignment explanation
Indices: 69042--69089 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
69032 TTATTTAAAT
* *
69042 TTATACTATATAAAATTATTA
1 TTATAATATATAAAATTATAA
* *
69063 TTATAATATTTTAAATTATAA
1 TTATAATATATAAAATTATAA
69084 TTATAA
1 TTATAA
69090 ACCTTTTGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
TTATAATATATAAAATTATAA
Found at i:69292 original size:19 final size:19
Alignment explanation
Indices: 69270--69309 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
69260 ATAAAAATTA
69270 TATTAATAATAATATTAAT
1 TATTAATAATAATATTAAT
* * *
69289 TATTTATATTAATATTTAT
1 TATTAATAATAATATTAAT
69308 TA
1 TA
69310 GCTTATTATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TATTAATAATAATATTAAT
Found at i:69304 original size:12 final size:12
Alignment explanation
Indices: 69267--69307 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
69257 CTTATAAAAA
*
69267 TTATATTAATAA
1 TTATATTAATAT
*
69279 TAATATTAATTAT
1 TTATATTAA-TAT
69292 TTATATTAATAT
1 TTATATTAATAT
69304 TTAT
1 TTAT
69308 TAGCTTATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 15 0.60
13 10 0.40
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
TTATATTAATAT
Found at i:69900 original size:16 final size:16
Alignment explanation
Indices: 69860--69901 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
69850 TTTATATTTA
69860 ATTAATAAT-TAAATT
1 ATTAATAATATAAATT
*
69875 ATT-ATAAATATCAATT
1 ATTAAT-AATATAAATT
69891 ATTAATAATAT
1 ATTAATAATAT
69902 TTTATTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
14 2 0.09
15 6 0.26
16 13 0.57
17 2 0.09
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
ATTAATAATATAAATT
Found at i:70549 original size:33 final size:31
Alignment explanation
Indices: 70512--70579 Score: 75
Period size: 33 Copynumber: 2.1 Consensus size: 31
70502 TAGAGAGTCA
* *
70512 TAAT-ATTAAGATTATTATAACTTATTTAATTAC
1 TAATAATTAA-ATAATTAT-ACTAATTT-ATTAC
*
70545 TAATAATTAAATAATTATACTAATTTATTTC
1 TAATAATTAAATAATTATACTAATTTATTAC
70576 TAAT
1 TAAT
70580 CAAATTAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
31 8 0.26
32 7 0.23
33 11 0.35
34 5 0.16
ACGTcount: A:0.44, C:0.06, G:0.01, T:0.49
Consensus pattern (31 bp):
TAATAATTAAATAATTATACTAATTTATTAC
Found at i:70671 original size:8 final size:8
Alignment explanation
Indices: 70658--70703 Score: 51
Period size: 8 Copynumber: 5.9 Consensus size: 8
70648 ATAGTTATAC
70658 TTATAATA
1 TTATAATA
70666 TTATAATA
1 TTATAATA
70674 TTAATAATA
1 TT-ATAATA
*
70683 GT-TAA-A
1 TTATAATA
70689 TTATAATA
1 TTATAATA
*
70697 TTTTAAT
1 TTATAAT
70704 TAAACATAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
6 2 0.06
7 6 0.19
8 17 0.53
9 7 0.22
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (8 bp):
TTATAATA
Found at i:70704 original size:14 final size:14
Alignment explanation
Indices: 70658--70705 Score: 51
Period size: 14 Copynumber: 3.2 Consensus size: 14
70648 ATAGTTATAC
70658 TTATAATATTATAATA
1 TTATAATATT-TAA-A
*
70674 TTAATAATAGTTAAA
1 TT-ATAATATTTAAA
*
70689 TTATAATATTTTAA
1 TTATAATATTTAAA
70703 TTA
1 TTA
70706 AACATAATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 13 0.46
15 3 0.11
16 5 0.18
17 7 0.25
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (14 bp):
TTATAATATTTAAA
Found at i:70898 original size:15 final size:14
Alignment explanation
Indices: 70864--70920 Score: 53
Period size: 14 Copynumber: 4.0 Consensus size: 14
70854 ACAATAATGA
*
70864 TAATATTTAATAAT
1 TAATATTAAATAAT
*
70878 TCATATTAAATTAAT
1 TAATATTAAA-TAAT
* *
70893 TAATATTTAAGAAT
1 TAATATTAAATAAT
70907 TAA-ATATAAATAAT
1 TAATAT-TAAATAAT
70921 AATTATGATC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
13 2 0.06
14 20 0.59
15 12 0.35
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (14 bp):
TAATATTAAATAAT
Found at i:70909 original size:14 final size:14
Alignment explanation
Indices: 70864--70909 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
70854 ACAATAATGA
70864 TAATATTTAATAAT
1 TAATATTTAATAAT
* *
70878 TCATATTAAATTAAT
1 TAATATTTAA-TAAT
*
70893 TAATATTTAAGAAT
1 TAATATTTAATAAT
70907 TAA
1 TAA
70910 ATATAAATAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
14 14 0.54
15 12 0.46
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (14 bp):
TAATATTTAATAAT
Found at i:71458 original size:22 final size:21
Alignment explanation
Indices: 71429--71477 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
71419 CTATTTTTTA
71429 ATAA-TAAATAGATAATAATCT
1 ATAACTAAATAGATAATAAT-T
***
71450 ATAACTAAATCTTTAATAATT
1 ATAACTAAATAGATAATAATT
71471 ATAACTA
1 ATAACTA
71478 TTACACTTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.53, C:0.08, G:0.02, T:0.37
Consensus pattern (21 bp):
ATAACTAAATAGATAATAATT
Found at i:71543 original size:16 final size:15
Alignment explanation
Indices: 71524--71556 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
71514 AAACTTTTGA
71524 ATAATATTATATAAAT
1 ATAATATTATA-AAAT
71540 ATAATATTATAAAAT
1 ATAATATTATAAAAT
71555 AT
1 AT
71557 TATAGACTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
ATAATATTATAAAAT
Found at i:71574 original size:20 final size:21
Alignment explanation
Indices: 71543--71599 Score: 66
Period size: 20 Copynumber: 2.8 Consensus size: 21
71533 TATAAATATA
*
71543 ATATTATAAAATATTATAGACT
1 ATATTAT-AAATATTAAAGACT
*
71565 AT-TTATAAATA-TAAAGATT
1 ATATTATAAATATTAAAGACT
71584 ATATTAT-AATATTAAA
1 ATATTATAAATATTAAA
71600 TATAATTAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
19 12 0.39
20 13 0.42
21 4 0.13
22 2 0.06
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.42
Consensus pattern (21 bp):
ATATTATAAATATTAAAGACT
Found at i:72138 original size:20 final size:18
Alignment explanation
Indices: 72096--72141 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 18
72086 TAAAGTATTA
*
72096 ATATTTAATTATTAATTT
1 ATATTTAATTATAAATTT
*
72114 TTATTTAATTAAATAAATTT
1 ATATTTAATT--ATAAATTT
72134 ATATTTAA
1 ATATTTAA
72142 AAATTTAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 9 0.39
20 14 0.61
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATATTTAATTATAAATTT
Found at i:72303 original size:28 final size:27
Alignment explanation
Indices: 72272--72332 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 27
72262 TATAAGGATT
* * *
72272 TTAATTTTAATATTGATTTAATTATTAA
1 TTAATTTTAATATT-ATTAAATAATAAA
72300 TTAATTTTTAATATTATTAAATAATAAA
1 TTAA-TTTTAATATTATTAAATAATAAA
72328 TTAAT
1 TTAAT
72333 ATATTATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
27 1 0.03
28 18 0.62
29 10 0.34
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (27 bp):
TTAATTTTAATATTATTAAATAATAAA
Found at i:72701 original size:27 final size:25
Alignment explanation
Indices: 72642--72701 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 25
72632 TAATTTAAAC
*
72642 ATTATAATAATTATTTTATAATATT
1 ATTATAATAACTATTTTATAATATT
72667 ATTAATAATTAACTATTTAATATAAT-TT
1 ATT-ATAA-TAACTATTT--TATAATATT
72695 ATTATAA
1 ATTATAA
72702 ATATTATTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
25 3 0.10
26 4 0.13
27 12 0.40
28 5 0.17
29 6 0.20
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (25 bp):
ATTATAATAACTATTTTATAATATT
Found at i:73239 original size:18 final size:19
Alignment explanation
Indices: 73218--73255 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
73208 ATATAATAGG
73218 AATACTATATG-TAATATT
1 AATACTATATGTTAATATT
*
73236 AATATTATATGTTAATATT
1 AATACTATATGTTAATATT
73255 A
1 A
73256 TCATAAGTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (19 bp):
AATACTATATGTTAATATT
Found at i:74076 original size:23 final size:23
Alignment explanation
Indices: 74050--74120 Score: 71
Period size: 19 Copynumber: 3.2 Consensus size: 23
74040 CATATATAAA
74050 ATTATTTTTATTAAGATAAATAT
1 ATTATTTTTATTAAGATAAATAT
*
74073 ATTA----TAATAAG-TATAATACT
1 ATTATTTTTATTAAGATA-AATA-T
*
74093 ATTATTTTTGTTAAGATAAATAT
1 ATTATTTTTATTAAGATAAATAT
74116 ATTAT
1 ATTAT
74121 AATTATAATA
Statistics
Matches: 38, Mismatches: 3, Indels: 14
0.69 0.05 0.25
Matches are distributed among these distances:
18 2 0.05
19 10 0.26
20 5 0.13
23 10 0.26
24 9 0.24
25 2 0.05
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.49
Consensus pattern (23 bp):
ATTATTTTTATTAAGATAAATAT
Found at i:75925 original size:17 final size:17
Alignment explanation
Indices: 75891--75945 Score: 58
Period size: 17 Copynumber: 3.1 Consensus size: 17
75881 TAACTAATCA
75891 ATTAATTATAATTTATTAT
1 ATTAATT-TAA-TTATTAT
75910 ATTAATTTAATTATTA-
1 ATTAATTTAATTATTAT
*
75926 ATATAATTTATTTTATTAT
1 AT-TAATTTA-ATTATTAT
75945 A
1 A
75946 CGATTTATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
16 2 0.06
17 13 0.41
18 9 0.28
19 8 0.25
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
ATTAATTTAATTATTAT
Found at i:75926 original size:12 final size:12
Alignment explanation
Indices: 75892--75933 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
75882 AACTAATCAA
75892 TTAATTA-TAAT
1 TTAATTATTAAT
*
75903 TTATTATATTAAT
1 TTAAT-TATTAAT
75916 TTAATTATTAAT
1 TTAATTATTAAT
*
75928 ATAATT
1 TTAATT
75934 TATTTTATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
11 4 0.15
12 14 0.54
13 8 0.31
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
TTAATTATTAAT
Found at i:76129 original size:12 final size:12
Alignment explanation
Indices: 76076--76174 Score: 52
Period size: 12 Copynumber: 8.4 Consensus size: 12
76066 TTATTTGTTA
*
76076 ATAATAATATAT
1 ATAATATTATAT
76088 A-AATATT-TAAT
1 ATAATATTAT-AT
*
76099 AAAATATTAT-T
1 ATAATATTATAT
76110 -TAA-A-TATAT
1 ATAATATTATAT
76119 ATAATATTATAT
1 ATAATATTATAT
*
76131 ATAAAAGATTTATAAT
1 AT--AATA-TTAT-AT
76147 ATAA-ATTATAAT
1 ATAATATTAT-AT
*
76159 CTAATA-TATAT
1 ATAATATTATAT
76170 ATAAT
1 ATAAT
76175 CTAATATATT
Statistics
Matches: 70, Mismatches: 5, Indels: 25
0.70 0.05 0.25
Matches are distributed among these distances:
8 3 0.04
9 2 0.03
10 6 0.09
11 16 0.23
12 27 0.39
13 3 0.04
14 5 0.07
15 4 0.06
16 4 0.06
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (12 bp):
ATAATATTATAT
Found at i:76174 original size:16 final size:17
Alignment explanation
Indices: 76143--76183 Score: 66
Period size: 16 Copynumber: 2.5 Consensus size: 17
76133 AAAAGATTTA
*
76143 TAATATAAATTATAATC
1 TAATATATATTATAATC
76160 TAATATATA-TATAATC
1 TAATATATATTATAATC
76176 TAATATAT
1 TAATATAT
76184 TAAGGTATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 15 0.65
17 8 0.35
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (17 bp):
TAATATATATTATAATC
Found at i:76494 original size:18 final size:17
Alignment explanation
Indices: 76469--76502 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
76459 GTAAGTTATA
76469 ATTTTTAATTATAATAT
1 ATTTTTAATTATAATAT
76486 ATTTATTAATTATAATA
1 ATTT-TTAATTATAATA
76503 GTCTAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTTTTAATTATAATAT
Found at i:77036 original size:13 final size:13
Alignment explanation
Indices: 77011--77044 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
77001 TATATTTATA
77011 TAATAATATTAAT
1 TAATAATATTAAT
77024 TAATTAATA-TAAT
1 TAA-TAATATTAAT
77037 TAATAATA
1 TAATAATA
77045 ATATTTGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 5 0.25
13 10 0.50
14 5 0.25
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
TAATAATATTAAT
Found at i:78066 original size:17 final size:17
Alignment explanation
Indices: 77972--78073 Score: 52
Period size: 17 Copynumber: 5.9 Consensus size: 17
77962 AAAATTGTCA
77972 TAATAA-ATTACTATTAAT
1 TAATAATATTA-T-TTAAT
* *
77990 AAATAAT-TTATTAAAT
1 TAATAATATTATTTAAT
* *
78006 TAAATTAAAATAATTTAAAT
1 T-AA-TAATATTATTT-AAT
*
78026 T-TTAATATTA--TAATT
1 TAATAATATTATTTAA-T
* *
78041 TAATTATATTGTTTAAT
1 TAATAATATTATTTAAT
78058 TAATAATATTATTTAA
1 TAATAATATTATTTAA
78074 ATTACTTATT
Statistics
Matches: 61, Mismatches: 14, Indels: 19
0.65 0.15 0.20
Matches are distributed among these distances:
14 2 0.03
15 3 0.05
16 10 0.16
17 24 0.39
18 14 0.23
19 4 0.07
20 4 0.07
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (17 bp):
TAATAATATTATTTAAT
Found at i:78089 original size:33 final size:30
Alignment explanation
Indices: 78027--78104 Score: 72
Period size: 30 Copynumber: 2.6 Consensus size: 30
78017 AATTTAAATT
* *
78027 TTAATATTATAATTT-AATTATATTGTTTAA
1 TTAATAATAT-ATTTAAATTATATTATTTAA
78057 TTAATAATATTATTTAAATTACTTATTATTTAA
1 TTAATAATA-TATTTAAATTA--TATTATTTAA
*
78090 ATAA-AATA-ATTTAAA
1 TTAATAATATATTTAAA
78105 CAATTGTTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
30 19 0.46
31 6 0.15
32 4 0.10
33 12 0.29
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (30 bp):
TTAATAATATATTTAAATTATATTATTTAA
Found at i:80145 original size:32 final size:33
Alignment explanation
Indices: 80090--80153 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
80080 ATTTAAAATC
80090 AGTTAAATTAATAATTAAAAATATTAATTATAT
1 AGTTAAATTAATAATTAAAAATATTAATTATAT
*
80123 AGTT-AATT-ATAATTATATAATATTAATTATA
1 AGTTAAATTAATAATTA-AAAATATTAATTATA
80154 ATGATAATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 7 0.24
32 18 0.62
33 4 0.14
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (33 bp):
AGTTAAATTAATAATTAAAAATATTAATTATAT
Found at i:80155 original size:12 final size:12
Alignment explanation
Indices: 80109--80165 Score: 54
Period size: 12 Copynumber: 5.1 Consensus size: 12
80099 AATAATTAAA
80109 AATATTAATTAT
1 AATATTAATTAT
80121 -ATAGTTAATTAT
1 AATA-TTAATTAT
80133 -A-ATT-A-TAT
1 AATATTAATTAT
80141 AATATTAATTAT
1 AATATTAATTAT
80153 AATGA-TAATTAT
1 AAT-ATTAATTAT
80165 A
1 A
80166 CTAAATATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
8 3 0.08
9 2 0.05
10 5 0.13
11 5 0.13
12 23 0.59
13 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (12 bp):
AATATTAATTAT
Found at i:80162 original size:32 final size:31
Alignment explanation
Indices: 80095--80165 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 31
80085 AAATCAGTTA
*
80095 AATTAATAATTAAAAATATTAATTATATAGTT
1 AATT-ATAATTAAAAATATTAATTATATAGAT
*
80127 AATTATAATTATATAATATTAATTATA-ATGAT
1 AATTATAATTA-AAAATATTAATTATATA-GAT
80159 AATTATA
1 AATTATA
80166 CTAAATATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 8 0.23
32 27 0.77
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (31 bp):
AATTATAATTAAAAATATTAATTATATAGAT
Found at i:80670 original size:37 final size:34
Alignment explanation
Indices: 80600--80700 Score: 112
Period size: 37 Copynumber: 2.8 Consensus size: 34
80590 AGATATAGTA
80600 ATATTATATTATTATTAATTATAATAATTAATTT
1 ATATTATATTATTATTAATTATAATAATTAATTT
*
80634 ATATTAATTTTATTATTAATATAATAATAATTAATTT
1 ATATT-ATATTATTATTAAT-T-ATAATAATTAATTT
* * * *
80671 ATTATAATATAATTATATTATTAAAATAAT
1 A-TATTATATTATTAT-TAATTATAATAAT
80701 ATAACTATAA
Statistics
Matches: 56, Mismatches: 6, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
34 5 0.09
35 13 0.23
36 8 0.14
37 24 0.43
38 6 0.11
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (34 bp):
ATATTATATTATTATTAATTATAATAATTAATTT
Found at i:80692 original size:19 final size:19
Alignment explanation
Indices: 80647--80698 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
80637 TTAATTTTAT
*
80647 TATTAATATAATAATAATTA
1 TATTATTATAAT-ATAATTA
80667 -ATTTATTATAATATAATTA
1 TA-TTATTATAATATAATTA
*
80686 TATTATTAAAATA
1 TATTATTATAATA
80699 ATATAACTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
19 18 0.64
20 10 0.36
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
TATTATTATAATATAATTA
Found at i:80699 original size:22 final size:23
Alignment explanation
Indices: 80638--80753 Score: 84
Period size: 22 Copynumber: 5.1 Consensus size: 23
80628 TAATTTATAT
* *
80638 TAATTTTATTATTAATATAATAA
1 TAATTATATTATTAAAATAATAA
80661 TAATTA-ATTTATT---ATAAT-A
1 TAATTATA-TTATTAAAATAATAA
80680 TAATTATATTATTAAAATAAT-A
1 TAATTATATTATTAAAATAATAA
* *
80702 TAACTATAAGTTTATTATAATAATAA
1 TAATTAT-A--TTATTAAAATAATAA
* *
80728 AAATTA-ATTATTAAATATAGTAA
1 TAATTATATTATTAAA-ATAATAA
80751 TAA
1 TAA
80754 AATCTAGCTA
Statistics
Matches: 75, Mismatches: 8, Indels: 20
0.73 0.08 0.19
Matches are distributed among these distances:
19 12 0.16
20 6 0.08
22 20 0.27
23 19 0.25
24 1 0.01
25 12 0.16
26 5 0.07
ACGTcount: A:0.52, C:0.01, G:0.02, T:0.46
Consensus pattern (23 bp):
TAATTATATTATTAAAATAATAA
Found at i:80725 original size:47 final size:43
Alignment explanation
Indices: 80593--80753 Score: 135
Period size: 42 Copynumber: 3.8 Consensus size: 43
80583 ATAACTAAGA
* * *
80593 TATAGTAAT-ATTATATTATTATTAATTATAATAATTAATTTA-
1 TATAATAATAATTATATTATTA-AAATAATAATAATTAATTTAT
*
80635 TAT--TAAT--TT-TATTATTAATATAATAATAATTAATTTAT
1 TATAATAATAATTATATTATTAAAATAATAATAATTAATTTAT
80673 TATAAT-ATAATTATATTATTAAAATAAT-ATAACTATAAGTTTAT
1 TATAATAATAATTATATTATTAAAATAATAATAA-T-TAA-TTTAT
*
80717 TATAATAATAAAAATTA-ATTATTAAATATAGTAATAA
1 TATAATAAT---AATTATATTATTAAA-ATAATAATAA
80754 AATCTAGCTA
Statistics
Matches: 99, Mismatches: 5, Indels: 23
0.78 0.04 0.18
Matches are distributed among these distances:
37 17 0.17
38 11 0.11
39 4 0.04
40 5 0.05
41 6 0.06
42 18 0.18
43 3 0.03
44 11 0.11
45 2 0.02
47 9 0.09
48 9 0.09
49 4 0.04
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.48
Consensus pattern (43 bp):
TATAATAATAATTATATTATTAAAATAATAATAATTAATTTAT
Found at i:80809 original size:14 final size:14
Alignment explanation
Indices: 80790--80816 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
80780 AATACATATT
80790 ATAATTTAATTATA
1 ATAATTTAATTATA
80804 ATAATTTAATTAT
1 ATAATTTAATTAT
80817 GTTATAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
ATAATTTAATTATA
Found at i:81227 original size:179 final size:181
Alignment explanation
Indices: 80924--81354 Score: 484
Period size: 179 Copynumber: 2.4 Consensus size: 181
80914 AAATAGTTAA
* * *
80924 GACTA-TTAGAACAATTATCTATTTCAAATTATTTTGACCTTTTA-TTTAGTCAAAAAATAATTG
1 GACTATTTA-AACAATTATCTATTTCAAATCATTATGACCTTTTATTTTA-TCATAAAATAATTG
* * * *
80987 CTTCAACTCATACATGCTTATTCAAAATAAAATAATACTAATTTATTAACATTTAAAAAATT-AT
64 TTTCAATTCATAAAAGCTTATTCAAAATAAAATAATACTAATTTATTAACATTTAAAAAATTGA-
* *
81051 TAAGTAAGA-AATTAGAAA-A-AAATCTA-TTTACCGAACAAGTTCAAATATTTTT
128 TAAGTAAGAGAATTA-AAACATAAATC-AGTTTACCGAACAAGCTCAAATAATTTT
* *
81103 GACTATTTAAACAATTATCTATTTAAAATCATTATGACCTTATATTTTATCATAAAATAATTGTT
1 GACTATTTAAACAATTATCTATTTCAAATCATTATGACCTTTTATTTTATCATAAAATAATTGTT
* * * *
81168 TCAATTCATAAAAGCTTA-TCTTAAATAAAATAATATTACTTTATTAATA-TTATAAAAATTGAT
66 TCAATTCATAAAAGCTTATTC-AAAATAAAATAATACTAATTTATTAACATTTA-AAAAATTGAT
* * * **
81231 AAGTTAGAGATTTAAAACATAAATCAGTTTATCGAATGAGCTCAAATAATTTT
129 AAGTAAGAGAATTAAAACATAAATCAGTTTACCGAACAAGCTCAAATAATTTT
* * * ** * *
81284 GGCCATTTAAATAATTATCTATTTCAAATCATTATGAATTTTTGTTTTATCATAAAACAATTGTT
1 GACTATTTAAACAATTATCTATTTCAAATCATTATGACCTTTTATTTTATCATAAAATAATTGTT
*
81349 TAAATT
66 TCAATT
81355 ATTTTATTTA
Statistics
Matches: 213, Mismatches: 30, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
178 5 0.02
179 107 0.50
180 14 0.07
181 87 0.41
ACGTcount: A:0.43, C:0.10, G:0.06, T:0.40
Consensus pattern (181 bp):
GACTATTTAAACAATTATCTATTTCAAATCATTATGACCTTTTATTTTATCATAAAATAATTGTT
TCAATTCATAAAAGCTTATTCAAAATAAAATAATACTAATTTATTAACATTTAAAAAATTGATAA
GTAAGAGAATTAAAACATAAATCAGTTTACCGAACAAGCTCAAATAATTTT
Found at i:81382 original size:30 final size:29
Alignment explanation
Indices: 81347--81416 Score: 72
Period size: 30 Copynumber: 2.3 Consensus size: 29
81337 AAAACAATTG
* *
81347 TTTAAATTATT-TTATTTAAATAATAAGTAA
1 TTTAAATTATTATTAATTAAACAAT-A-TAA
81377 TTTAAATAATATTATTAATTAAACAATATAA
1 TTTAAAT--TATTATTAATTAAACAATATAA
81408 -TTAAATTAT
1 TTTAAATTAT
81417 AATATTAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
28 3 0.09
30 13 0.37
31 3 0.09
32 5 0.14
33 11 0.31
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (29 bp):
TTTAAATTATTATTAATTAAACAATATAA
Found at i:81404 original size:17 final size:17
Alignment explanation
Indices: 81378--81411 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
81368 AATAAGTAAT
* *
81378 TTAAATAATATTATTAA
1 TTAAACAATATAATTAA
81395 TTAAACAATATAATTAA
1 TTAAACAATATAATTAA
81412 ATTATAATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (17 bp):
TTAAACAATATAATTAA
Found at i:81616 original size:33 final size:33
Alignment explanation
Indices: 81578--81640 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 33
81568 ATTTTTTATT
81578 ATTATTTATTAATATCAATAA-ATAGTCATAAAA
1 ATTA-TTATTAATATCAATAATATAGTCATAAAA
* * *
81611 ATTATTGTTAATATTAATAATATATTCATA
1 ATTATTATTAATATCAATAATATAGTCATA
81641 TTAATTTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 14 0.54
33 12 0.46
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (33 bp):
ATTATTATTAATATCAATAATATAGTCATAAAA
Found at i:82475 original size:21 final size:22
Alignment explanation
Indices: 82446--82494 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
82436 ATTATTATTA
*
82446 ATTATATTAATAATTAAT-TAAT
1 ATTATATT-ATAATAAATATAAT
*
82468 ATTA-ATTATTATAAATATAAT
1 ATTATATTATAATAAATATAAT
82489 ATTATA
1 ATTATA
82495 ATGTTAGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 7 0.30
21 11 0.48
22 5 0.22
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
ATTATATTATAATAAATATAAT
Found at i:82496 original size:29 final size:27
Alignment explanation
Indices: 82432--82496 Score: 64
Period size: 26 Copynumber: 2.4 Consensus size: 27
82422 AGAGTAATTC
*
82432 AAATATTAT--TATTAATTATATTAAT
1 AAATATTATAATATTAATTATATAAAT
* *
82457 AATTAAT-TAATATTAATTATTATAAAT
1 AAATATTATAATATTAATTA-TATAAAT
82484 ATAATATTATAAT
1 A-AATATTATAAT
82497 GTTAGTTACC
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
24 1 0.03
25 5 0.17
26 9 0.30
27 7 0.23
28 4 0.13
29 4 0.13
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (27 bp):
AAATATTATAATATTAATTATATAAAT
Found at i:83396 original size:20 final size:20
Alignment explanation
Indices: 83373--83431 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 20
83363 ATAAATCTGT
83373 TATATATATATAATATTATA
1 TATATATATATAATATTATA
* * *
83393 TATATTTAAATAATATTTTA
1 TATATATATATAATATTATA
* *
83413 T-TAAATATTTATATATTAT
1 TATATATATATA-ATATTAT
83432 TATTAAAAAA
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
19 6 0.20
20 24 0.80
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
TATATATATATAATATTATA
Found at i:83431 original size:18 final size:17
Alignment explanation
Indices: 83372--83433 Score: 53
Period size: 18 Copynumber: 3.8 Consensus size: 17
83362 TATAAATCTG
83372 TTATATA-TA-TATAATA
1 TTATATATTATTA-AATA
83388 TTATATA-TATTTAAATA
1 TTATATATTA-TTAAATA
*
83405 --ATATTTTATTAAATA
1 TTATATATTATTAAATA
83420 TTTATATATTATTA
1 -TTATATATTATTA
83434 TTAAAAAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
15 11 0.29
16 11 0.29
17 4 0.11
18 12 0.32
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TTATATATTATTAAATA
Found at i:83432 original size:23 final size:22
Alignment explanation
Indices: 83377--83432 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
83367 ATCTGTTATA
* * *
83377 TATATATAATATTATATATATT
1 TATATATTATTTTATAAATATT
* *
83399 TAAATAATATTTTATTAAATATT
1 TATATATTATTTTA-TAAATATT
83422 TATATATTATT
1 TATATATTATT
83433 ATTAAAAAAT
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
22 10 0.38
23 16 0.62
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TATATATTATTTTATAAATATT
Found at i:85481 original size:40 final size:41
Alignment explanation
Indices: 85405--85499 Score: 101
Period size: 40 Copynumber: 2.4 Consensus size: 41
85395 TAATATTATA
* *
85405 ATTA-ATATATATTCATCTTAACAAATAATGTATTATACT-T
1 ATTATATATATATTTATCTTAAAAAATAATGTATTATA-TGT
85445 ATTATA-ATATATTTATCTTAATAAAAATAAT-T-TTATATGT
1 ATTATATATATATTTATCTT-A-AAAAATAATGTATTATATGT
*
85485 ATTATATAAATATTT
1 ATTATATATATATTT
85500 TATATAGTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
39 1 0.02
40 28 0.60
41 10 0.21
42 8 0.17
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.48
Consensus pattern (41 bp):
ATTATATATATATTTATCTTAAAAAATAATGTATTATATGT
Found at i:86029 original size:16 final size:16
Alignment explanation
Indices: 86008--86038 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
85998 TATTATACTA
*
86008 AATTAATCTTAATATT
1 AATTAATATTAATATT
86024 AATTAATATTAATAT
1 AATTAATATTAATAT
86039 AAAATTAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (16 bp):
AATTAATATTAATATT
Found at i:86213 original size:14 final size:14
Alignment explanation
Indices: 86176--86213 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
86166 ATATCTTATT
*
86176 ATTTATTATTAATA
1 ATTTATTAATAATA
86190 ATGTTA-TAATAATA
1 AT-TTATTAATAATA
86204 ATTTATTAAT
1 ATTTATTAAT
86214 TTATAACGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 3 0.14
14 15 0.71
15 3 0.14
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (14 bp):
ATTTATTAATAATA
Found at i:86292 original size:18 final size:18
Alignment explanation
Indices: 86261--86305 Score: 72
Period size: 18 Copynumber: 2.4 Consensus size: 18
86251 TGACTTATGA
86261 TAATATTAACATATAATAT
1 TAATATT-ACATATAATAT
86280 TAATATTACATATAATAT
1 TAATATTACATATAATAT
*
86298 TCATATTA
1 TAATATTA
86306 TATTGAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 18 0.72
19 7 0.28
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (18 bp):
TAATATTACATATAATAT
Found at i:87510 original size:15 final size:16
Alignment explanation
Indices: 87490--87519 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
87480 TAATAATTTA
87490 TATTATT-ATTTATAC
1 TATTATTAATTTATAC
87505 TATTATTAATTTATA
1 TATTATTAATTTATA
87520 ATAATTTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (16 bp):
TATTATTAATTTATAC
Found at i:87677 original size:29 final size:34
Alignment explanation
Indices: 87617--87679 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 34
87607 ACTATTTATA
*
87617 ATTATAATATATATATTATATATAAATTAATAAT
1 ATTATAATATATATATTATATATAAATCAATAAT
87651 ATTATAA-ATATA-ATTAT-T-T-AATCAATAAT
1 ATTATAATATATATATTATATATAAATCAATAAT
87680 TAAAGTATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
29 9 0.32
30 1 0.04
31 1 0.04
32 5 0.18
33 5 0.18
34 7 0.25
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (34 bp):
ATTATAATATATATATTATATATAAATCAATAAT
Found at i:88495 original size:19 final size:19
Alignment explanation
Indices: 88447--88497 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
88437 TATAATTTAA
**
88447 ATAATATATAATAGTTTAT
1 ATAATATATAATAACTTAT
*
88466 ATTAA-AAATAATAACTTAT
1 A-TAATATATAATAACTTAT
88485 ATAATATATAATA
1 ATAATATATAATA
88498 TTAACTATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
18 3 0.12
19 20 0.77
20 3 0.12
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (19 bp):
ATAATATATAATAACTTAT
Found at i:88519 original size:22 final size:21
Alignment explanation
Indices: 88471--88520 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
88461 TTTATATTAA
*
88471 AAATAATAACTTATATAATAT
1 AAATATTAACTTATATAATAT
88492 ATAATATTAAC-TATTATAATACT
1 A-AATATTAACTTA-TATAATA-T
88515 AAATAT
1 AAATAT
88521 AACATAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 3 0.12
22 20 0.80
23 2 0.08
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (21 bp):
AAATATTAACTTATATAATAT
Found at i:88635 original size:14 final size:14
Alignment explanation
Indices: 88616--88642 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
88606 AGTATTTAGT
88616 AATAATTTGATCAC
1 AATAATTTGATCAC
88630 AATAATTTGATCA
1 AATAATTTGATCA
88643 ATAAGTTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.37
Consensus pattern (14 bp):
AATAATTTGATCAC
Found at i:88897 original size:22 final size:21
Alignment explanation
Indices: 88862--88926 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 21
88852 TATAATAGTT
88862 AATTATTTTAATAATTAATACA
1 AATTATTTT-ATAATTAATACA
* * *
88884 AATTATTCTTATAAATCATATA
1 AATTATT-TTATAATTAATACA
*
88906 AATTATAATTATACATTAATA
1 AATTAT-TTTATA-ATTAATA
88927 TATTATATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
22 27 0.79
23 7 0.21
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45
Consensus pattern (21 bp):
AATTATTTTATAATTAATACA
Found at i:88952 original size:18 final size:19
Alignment explanation
Indices: 88908--88954 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
88898 ATCATATAAA
88908 TTATAAT-TATACATTAAT
1 TTATAATATATACATTAAT
* * *
88926 ATATTATATATA-ATTATT
1 TTATAATATATACATTAAT
88944 TTATAATATAT
1 TTATAATATAT
88955 TTAGATATTC
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (19 bp):
TTATAATATATACATTAAT
Found at i:89521 original size:13 final size:14
Alignment explanation
Indices: 89476--89519 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
89466 GAATGTTAAT
89476 AATTAAAA-ATTTTA
1 AATTAAAATA-TTTA
*
89490 AATTTTAAATATTTA
1 AA-TTAAAATATTTA
89505 AATTAAAATATTTA
1 AATTAAAATATTTA
89519 A
1 A
89520 TTTTTATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 14 0.54
15 11 0.42
16 1 0.04
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
AATTAAAATATTTA
Found at i:89521 original size:28 final size:29
Alignment explanation
Indices: 89476--89533 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 29
89466 GAATGTTAAT
89476 AATTAAAAATTTTAAATTTTAAATATTTA
1 AATTAAAAATTTTAAATTTTAAATATTTA
* *
89505 AATT-AAAATATTT-AATTTTTATTATTTA
1 AATTAAAAAT-TTTAAATTTTAAATATTTA
89533 A
1 A
89534 TTGTCGATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 19 0.73
29 7 0.27
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (29 bp):
AATTAAAAATTTTAAATTTTAAATATTTA
Found at i:89642 original size:15 final size:16
Alignment explanation
Indices: 89624--89654 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
89614 TAAATATTTT
89624 AATTATTGATT-AATA
1 AATTATTGATTCAATA
89639 AATTATTGATTCAATA
1 AATTATTGATTCAATA
89655 GACTATTCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.45
Consensus pattern (16 bp):
AATTATTGATTCAATA
Found at i:89695 original size:16 final size:15
Alignment explanation
Indices: 89666--89700 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
89656 ACTATTCACA
89666 TATACATTTAATTAT
1 TATACATTTAATTAT
*
89681 TATACTATTTGATTAT
1 TATAC-ATTTAATTAT
89697 TATA
1 TATA
89701 AAATTATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.54
Consensus pattern (15 bp):
TATACATTTAATTAT
Found at i:89726 original size:27 final size:27
Alignment explanation
Indices: 89675--89728 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
89665 ATATACATTT
*
89675 AATTATTATACTATTTGATTATTATAA
1 AATTATTATACTATTTAATTATTATAA
89702 AATTATTA-ACTAATTTAA-TATTTATAA
1 AATTATTATACT-ATTTAATTA-TTATAA
89729 TGAAATAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.50
Consensus pattern (27 bp):
AATTATTATACTATTTAATTATTATAA
Found at i:89949 original size:15 final size:16
Alignment explanation
Indices: 89929--90001 Score: 68
Period size: 15 Copynumber: 4.9 Consensus size: 16
89919 TAACACTAAT
89929 TTATTAAATTAA-ATA
1 TTATTAAATTAATATA
89944 TTATT-AATTAATATA
1 TTATTAAATTAATATA
* *
89959 TTATTAATTTACTA-A
1 TTATTAAATTAATATA
*
89974 TTAATAAATTAACTA-A
1 TTATTAAATTAA-TATA
89990 -TATT-AATTAATA
1 TTATTAAATTAATA
90002 ACAATGATTA
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
13 2 0.04
14 12 0.24
15 26 0.53
16 9 0.18
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (16 bp):
TTATTAAATTAATATA
Found at i:89966 original size:11 final size:13
Alignment explanation
Indices: 89925--90000 Score: 63
Period size: 12 Copynumber: 6.0 Consensus size: 13
89915 TAAATAACAC
89925 TAAT-TTATTAAAT
1 TAATATTATT-AAT
89938 TAAATATTATTAAT
1 T-AATATTATTAAT
89952 TAATA-TATT-AT
1 TAATATTATTAAT
*
89963 TAAT-TTACTAAT
1 TAATATTATTAAT
* *
89975 TAATA-AATTAAC
1 TAATATTATTAAT
89987 TAATATTAATTAAT
1 TAATATT-ATTAAT
90001 AACAATGATT
Statistics
Matches: 50, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
11 9 0.18
12 19 0.38
13 5 0.10
14 12 0.24
15 5 0.10
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (13 bp):
TAATATTATTAAT
Found at i:90093 original size:16 final size:18
Alignment explanation
Indices: 90060--90097 Score: 62
Period size: 16 Copynumber: 2.2 Consensus size: 18
90050 TATAATTAGT
90060 TAATATAATAACATTAAA
1 TAATATAATAACATTAAA
90078 TAATAT-ATAA-ATTAAA
1 TAATATAATAACATTAAA
90094 TAAT
1 TAAT
90098 CATTTAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 10 0.50
17 4 0.20
18 6 0.30
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (18 bp):
TAATATAATAACATTAAA
Done.