Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168502.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_99, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 89750
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Found at i:2691 original size:59 final size:59
Alignment explanation
Indices: 2544--2936 Score: 407
Period size: 58 Copynumber: 6.7 Consensus size: 59
2534 CTGCGTAGGA
* * * *
2544 AAAATTGATACTTTCAACTTTT-TCCTAAAAA-TATTCTTTTGAAACTTTA-ATTTAGAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAAATTATT-TTTTGAAAATTTATTTTTA-AGG
* * *
2602 AAGATTGATACTTTAAACTTTTCCTC-AAAAATTGATTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAAATT-ATTTTTTGAAAATTTATTTTTAAGG
* * *
2661 -AAATTGATACTTTCAA-TTTTCCCCAAAAAAAAATTTTTTTTTGGAAATTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCC---AAAAAATTATTTTTT-GAAAATTT-ATTTTTAAGG
* * * *
2723 AAAAATTGATACTTTCAACTTTTCCTC-AAAAA-TATTTTTGGAAACTTT-TGATTTCAAGG
1 -AAAATTGATACTTTCAACTTTTCCCCAAAAAATTATTTTTTGAAAATTTAT--TTTTAAGG
* * ** *
2782 AAAATTGATACTTTTAACTTTTCCTCAAAAACCT-TTTTTTGAAATTTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAAATTATTTTTTGAAAATTTATTTTTAAGG
*
2840 AAAATTGATACTTTCAACTTTTCCCCAAAAATATT-TTTTTTGGAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAA-ATTATTTTTTGAAAATTTATTTTTAAGG
2899 AAAATTGATACTTTCAACTTTTCCCC-AAAAA-TATTTTT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAAATTATTTTT
2937 CCCCAAAAAA
Statistics
Matches: 288, Mismatches: 27, Indels: 41
0.81 0.08 0.12
Matches are distributed among these distances:
56 1 0.00
57 14 0.05
58 104 0.36
59 97 0.34
60 21 0.07
61 19 0.07
62 9 0.03
64 16 0.06
65 7 0.02
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.44
Consensus pattern (59 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAAATTATTTTTTGAAAATTTATTTTTAAGG
Found at i:2847 original size:180 final size:174
Alignment explanation
Indices: 2540--2936 Score: 570
Period size: 180 Copynumber: 2.2 Consensus size: 174
2530 GTTCCTGCGT
*
2540 AGGAAAAATTGATACTTTCAACTTTTTCCT-AAAAATATTCTTTTGAAACTTTAATTTAGAGGAA
1 AGGAAAAATTGATACTTTCAAC-TTTTCCTCAAAAATATT-TTTGGAAACTTTAATTTAGAGGAA
* *
2604 GATTGATACTTTAAACTTTTCCTCAAAAATTGATTTTTTGAAAATTTATTTTTAAGGAAATTGAT
64 AATTGATACTTTAAACTTTTCCTCAAAAACT-ATTTTTTGAAAATTTATTTTTAAGGAAATTGAT
2669 ACTTTCAA-TTTTCCCCAAAAAAAAATTTTTTTTTGGAAATTTTGATTTTCA
128 ACTTTCAACTTTTCCCC--AAAAAAA-TTTTTTTTGGAAA-TTT-ATTTTCA
*
2720 AGGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTGGAAACTTTTGATTTCA-AGGAA
1 AGGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTGGAAAC-TTTAATTT-AGAGGAA
* *
2784 AATTGATACTTTTAACTTTTCCTCAAAAACCT-TTTTTTGAAATTTTATTTTTAAGGAAAATTGA
64 AATTGATACTTTAAACTTTTCCTCAAAAA-CTATTTTTTGAAAATTTATTTTTAAGG-AAATTGA
* *
2848 TACTTTCAACTTTTCCCCAAAAATATTTTTTTTGGAAATTTATTTTTA
127 TACTTTCAACTTTTCCCCAAAAAAATTTTTTTTGGAAATTTATTTTCA
*
2896 AGG-AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTT
1 AGGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTT
2937 CCCCAAAAAA
Statistics
Matches: 202, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
175 37 0.18
176 9 0.04
177 3 0.01
178 13 0.06
179 44 0.22
180 86 0.43
181 10 0.05
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (174 bp):
AGGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTGGAAACTTTAATTTAGAGGAAAA
TTGATACTTTAAACTTTTCCTCAAAAACTATTTTTTGAAAATTTATTTTTAAGGAAATTGATACT
TTCAACTTTTCCCCAAAAAAATTTTTTTTGGAAATTTATTTTCA
Found at i:2951 original size:15 final size:16
Alignment explanation
Indices: 2917--2951 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
2907 TACTTTCAAC
*
2917 TTTTCCCCAAAAATAT
1 TTTTCCCCAAAAATAG
2933 TTTTCCCCAAAAA-AG
1 TTTTCCCCAAAAATAG
2948 TTTT
1 TTTT
2952 AAAAAAATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.34, C:0.23, G:0.03, T:0.40
Consensus pattern (16 bp):
TTTTCCCCAAAAATAG
Found at i:5089 original size:26 final size:26
Alignment explanation
Indices: 5053--5105 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5043 GTTGACTTAG
*
5053 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5079 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5105 G
1 G
5106 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6370 original size:877 final size:871
Alignment explanation
Indices: 3364--6689 Score: 3599
Period size: 889 Copynumber: 3.8 Consensus size: 871
3354 TGGGTTGATC
* * * *
3364 CCCAGTCCAAGATCAGACTGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGG
1 CCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGGTGCACATGCTGGGCTCAAGCATGTGCTGG
* * * * ** * * * * *
3429 TGCCACTTTTTTTTTTCGCCAGGGCACCATCACCAGAGCAC-CTGACCGGCGGCATT-GGGGTTC
66 AGCCAC-ATTTTTTTAC-CCAGGCCACCATCGTCAGAGAACTC-AAGCGACGGCATTAGGGTTTC
* * * * *
3492 CGACGATTGGGGGGGTGGGGGTGGATGTGCACACATGATGTGTGATGGCTGCTGGTACTTGGCCC
128 AG-CGATT-GGGGGG-AGGGG-GG-TGTGCACACATGATCTGCGATGGGTGCTGGTACTTGGCCC
* *
3557 TTATGTTGGCCTC-CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCTTTTGAG
188 TTATATTGGCC-CACTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
3621 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
252 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * *
3686 CACAAAATCCTTTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCTAAAAAAAAATACAA
317 CACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC-CAACAAAAATACAA
* * * * *
3751 GGATCACGTCTACCAAGTTTCGTGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCAAACA
381 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-AAAAAATTTTAAAAAAATCCCGAACC
* * * * *
3816 GTAAAAAGTTTCAAAAATCATGAAAAATACAAAACAAGTCGTCTTGCCATGAAACTTAACATGAA
445 GTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAA
* *
3881 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGCAAAAATATGA
510 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-GGCATTGGCATGGCAGAAATATGA
* * *
3946 AGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCG
574 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCG
* * * * * * *
4011 GCGTAGTGCCCGCCCGTCCA----CTCGTTTCGTAGGTGGGCTTAGGTATACGGAGTTCATTCCC
639 ACGTAGTGCCCGCCCGCCCACCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCC
* * * ** * * * *
4072 AGTCTAAGATTAGACC-GTATAGAGCGTTGCTGCAGCAGGATCGACAGCACGCTGAGGGGGACCC
704 AGTCTAAGATCAGACCAG-ACAGAGGGTTGGAGCAGCAGGATCAATAGCACGCTAAGGGGCACCC
** * * * * * * * * * * * * *
4136 GACTGATCCCCGACATGCGCATTCTGCCCCT-CGACCGGCTGAGCGCCAGTACGCTCGTTTCGTC
768 GACCAATCCCCGACTTACGCATCCTGCCCCTATGGCAGGCTAAACACCCGAACGCTCGTTTTGTG
4200 GGTTGAC-T-TA-G-G-CA-TA-C-G----GAGTTCATT
833 GGTTGACTTATACGAGTCACTAGCAGCATAGAGTTCATT
** ** * * * ** *
4227 CCCAGTCTAAGATTGGATAGCACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGTATGTGCTGG
1 CCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGGTGCACATGCTGGGCTCAAGCATGTGCTGG
* ** * * * *
4292 TGCCGTATTTTTTTGGCTCGGGCCACCA---TC-----ACT---G-GA--GC-TTTGAGG-TTCT
66 AGCCACATTTTTTT-ACCCAGGCCACCATCGTCAGAGAACTCAAGCGACGGCATTAG-GGTTTC-
* * * *
4341 GGCGATTGGGGGGCCGGGGGGCTGT-CTGCACATGATGTGCGAT-GG-G-T-G--C-TGG---TT
128 AGCGATTGGGGGG-AGGGGGG-TGTGC-ACACATGATCTGCGATGGGTGCTGGTACTTGGCCCTT
* * * *
4395 ATATTGGGCCACTATCCCTCAGCAAGCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
190 ATATTGGCCCACTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
*
4460 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCTC
255 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
4525 AAAATCCTGTACACTTCGAGTTTTTAGCTAAATTATTTTGTGCATGCCAATAAAAATACAAGGAT
320 AAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
4590 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAAATCCCGAACCGTAA
385 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-AAAAAATTTTAAAAAAATCCCGAACCGTAA
* * *
4655 AAAGTTTTAAAAATCGTAAAAAATAGAAAATGAGTCGTCTTGTCATGAAACTTCACATGAAGGCT
449 AAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCT
*
4720 TAAGGGACCATTGTATGAATTTACAAGCCATTAAAATGGCATTGGCATGGCAGAAATATGAAGAT
514 TAAGGGACCATTGTATGAATTTACAAGCCA-TAAAAAGGCATTGGCATGGCAGAAATATGAAGAT
* * * *
4785 GCGCCTAAACCCATCTACCACCCTATCGATCCATGGCTTGCGCATCCTGCCTCTCTGGCCGAC--
578 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGT
* * * *
4848 AGTGCCCGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGGTTAGGCATACGGAGTTCATTCCC
643 AGTGCCCGCCCGCCCACCCGCTCG--T-TTT-GTCGGTTGGCTTAGGCATACGAAGTTCATTCCC
* * * * * * * *
4913 AATCTAAGATCAGACCGGACTGAGGGTTGTAGCAGTAGGATCAATAGCATGCTGAGGGGGACCCG
704 AGTCTAAGATCAGACCAGACAGAGGGTTGGAGCAGCAGGATCAATAGCACGCTAAGGGGCACCCG
* * ** * * * * ** * *
4978 ATCGATCTTCGGCTTACGCATCCTGCCCTTATGGCTGGCTGAATGCCCGCACGCTTGTTTTGTGG
769 ACCAATCCCCGACTTACGCATCCTGCCCCTATGGCAGGCTAAACACCCGAACGCTCGTTTTGTGG
5043 GTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATT
834 GTTGACTT----ATAC-GAG-TCA---CTAG-C--AGCATA--GAGTTCATT
5095 CCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGGTGCACATGCTGGGCTCAAGCATGTGCTGG
1 CCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGGTGCACATGCTGGGCTCAAGCATGTGCTGG
* * * * * *
5160 AGCCGCATTTTTTTTCCCAGGCCACCATCGTCGGAGAACTTAAGCGACGGTATTAGGGTTTCAGT
66 AGCCACATTTTTTTACCCAGGCCACCATCGTCAGAGAACTCAAGCGACGGCATTAGGGTTTCAGC
* * * * *
5225 GATTGGGGGGAGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGTCCTTTATATTG
131 GATTGGGGGGAGGGGGGTGTGCACACATGATCTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
5290 GCCCGCTATCCCTCATCAAACCTCGAGAACTCAGACCCCCTTAAAGAGCATTTGAGATTTTACAG
196 GCCCACTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
5355 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATC
261 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
5420 TTTTACACTTCGAGTTTTTAGCTGAATTTTTTTGAGCATGCCAACAAAAATACAAGGATCACGTC
326 CTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
*
5485 TACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTT
391 TACCAAGTTTGGGGCCAAAACTCCTTCT-AAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTT
* *
5550 TCAAAAATTGTAAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACATGAAGGCTTAAGGG
455 TCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
*
5615 ACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCATGGCAGAAATTTGAAGATGTGCCT
520 ACCATTGTATGAATTTACAAGCCAT-AAAAAGGCATTGGCATGGCAGAAATATGAAGATGTGCCT
** * *
5680 AAACCGGCCTACCACCCT-TCGATCCACGGCTTGCACATCCCACCTCTCTGGCCGACGTAGTGCC
584 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCC
*
5744 CACCC-CCCACCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
649 CGCCCGCCCACCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
* * * * **
5808 TAGACCAGACCAG-GGGTTGGGGTAGCAGGATCGAA-AGCACGTTAAGTTGCACCCGACCAATCC
714 CAGACCAGA-CAGAGGGTTGGAGCAGCAGGATC-AATAGCACGCTAAGGGGCACCCGACCAATCC
* * * *
5871 CCGACTTGCGTATCTTGCCCCTATGGCCAGTC-AAACACCCGAACGCTCGTTTTGTGGGTTGAC-
777 CCGACTTACGCATCCTGCCCCTATGG-CAGGCTAAACACCCGAACGCTCGTTTTGTGGGTTGACT
5934 T-TA-G-G-CA-TA-C-G-A-A-A-TTCATT
841 TATACGAGTCACTAGCAGCATAGAGTTCATT
* * * * *
5954 CCCAGTCTAAGATCAGACCGGATTGAGGGTTGTGGGTGCATATGCTGGGCTCAGGCATGTGGTGG
1 CCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGGTGCACATGCTGGGCTCAAGCATGTGCTGG
*** * * *
6019 TTTCACATTTATTTTCACCCGGGGCACCATCGTCAGAGCATCGTCAGAGAACCTGACCGGCGGCA
66 AGCCACATTT-TTTT-ACCCAGGCCACCATCGTCAGAG-AAC-TCA-AG---C-GA----CGGCA
* **
6084 TTGGGGTTTTGGCGATTGGGGGGGTCAGATGGGGGTGTGCACACATGATCTGCGATGGGTGCTGG
118 TTAGGGTTTCAGCGATT-GGGGGG--AG--GGGGGTGTGCACACATGATCTGCGATGGGTGCTGG
* *
6149 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
178 TACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * * * *
6214 GCATTTTAGATCTTACAGGTTTGCTGCCATTAGCCATTAAAGTGTCCGAAATGAGGATACTTTTT
243 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
6279 TCAAATGGTCAGAAAATCCTGTACACTTTC-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
308 TCAAATGGTCACAAAATCCTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * *
6343 AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCCAAACTCCTTCTAAAAAATTTTTTAAAATA
372 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAA-TTTTAAAAAAA
* *
6408 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
436 TCCCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* **
6473 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGC-TTGGCACCAGCA
501 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAGGCATTGGCA-TGGCA
* *
6537 GAAATATGAAGATGTGCCTAAACCCACCTACCCACCGCTATCGATCCAACAGCTTGCGCATCTCG
565 GAAATATGAAGATGTGCCTAAACCCACCTA-CCACC-CTATCGATCC-ACGGCTTGCGCATCCCG
** * * * **
6602 CCTCGTC-GATCGGCGTAGTGCACGCCACGCCCATCCGCTCGTTTACATCGGTTGGCTTA-GCAT
627 CCTC-TCTGGCCGACGTAGTGCCCGCC-CGCCCACCCGCTCGTTT-TGTCGGTTGGCTTAGGCAT
* *
6665 GCAAGAGTTCCATTCCCAGTCTAAG
689 ACGA-AGTT-CATTCCCAGTCTAAG
6690 CTCGAACCGG
Statistics
Matches: 2098, Mismatches: 257, Indels: 195
0.82 0.10 0.08
Matches are distributed among these distances:
833 14 0.01
835 244 0.12
836 172 0.08
837 3 0.00
839 4 0.00
840 3 0.00
841 102 0.05
842 32 0.02
843 2 0.00
844 1 0.00
845 2 0.00
846 19 0.01
847 12 0.01
848 13 0.01
849 3 0.00
850 2 0.00
851 1 0.00
853 2 0.00
854 2 0.00
857 2 0.00
859 74 0.04
860 5 0.00
861 18 0.01
862 18 0.01
863 64 0.03
864 3 0.00
865 1 0.00
867 11 0.01
868 79 0.04
870 4 0.00
872 17 0.01
873 6 0.00
874 2 0.00
875 11 0.01
876 44 0.02
877 370 0.18
878 6 0.00
879 29 0.01
880 40 0.02
881 18 0.01
882 27 0.01
883 17 0.01
884 16 0.01
885 128 0.06
886 12 0.01
887 1 0.00
888 35 0.02
889 397 0.19
890 10 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (871 bp):
CCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGGTGCACATGCTGGGCTCAAGCATGTGCTGG
AGCCACATTTTTTTACCCAGGCCACCATCGTCAGAGAACTCAAGCGACGGCATTAGGGTTTCAGC
GATTGGGGGGAGGGGGGTGTGCACACATGATCTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
GCCCACTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
CTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
TACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTT
CAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAAGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAA
ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCG
CCCGCCCACCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCA
GACCAGACAGAGGGTTGGAGCAGCAGGATCAATAGCACGCTAAGGGGCACCCGACCAATCCCCGA
CTTACGCATCCTGCCCCTATGGCAGGCTAAACACCCGAACGCTCGTTTTGTGGGTTGACTTATAC
GAGTCACTAGCAGCATAGAGTTCATT
Found at i:7588 original size:26 final size:26
Alignment explanation
Indices: 7552--7604 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
7542 GTTGACTTAG
7552 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
7578 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
7604 G
1 G
7605 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:9362 original size:26 final size:26
Alignment explanation
Indices: 9325--9377 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
9315 GTTGACTTAG
* *
9325 GCATACGGAGTTCATTGCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
9351 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
9377 G
1 G
9378 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:11843 original size:26 final size:26
Alignment explanation
Indices: 11813--11863 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
11803 GTTGACTTAG
11813 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11839 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
11864 TAATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12397 original size:898 final size:886
Alignment explanation
Indices: 10494--12736 Score: 3070
Period size: 898 Copynumber: 2.5 Consensus size: 886
10484 TTAAAACATG
* * *
10494 CCTTCTGAAAAGAGTTT-AAAAAATCTCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAA
1 CCTTCTGAAAAAATTTTAAAAAAATCTCAAACCGTAAAATGTTTTAAAAATCGTGAAAAATAGAA
* **
10558 AACGAGTCGACTTGCCATGAAACTTTGCATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
66 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
10623 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTTCCTAACCCCACCTACCACCCTATCG
131 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * * * *
10688 ATGCACAGCTTGCGCATCCCGCCTCTCTGGTCGACGTAGTGCCCGCCCACCCGCCCGCTCTTTTT
196 ATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTC
* * *
10753 GTCGGTTGGGTTAGGCATACGGAGTTCATTCCCAGTCTAAG-TTAGGACCGGATCGAGGATTGCG
261 GTCGGTTGGGTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTA-GACCAGATCGAGGGTTGCG
* * ** * * * ** * * *
10817 GCAGCAGGATCGGCAGCACGCTGTGTGGGACCCAATTGA-TCCTCGGCTTACACATTCTGCCCCT
325 GCAGAAGGATCAGCAG-ACGCAATGAGGGGCCCGACCGATTCC-CGGCTTGCGCATCCTGCCCCT
* * *
10881 CTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
388 CTGGCCGGCTGAGCGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
10946 GTCTAAGCACATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGGGTGCACAT
453 GTCTAAGCACATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGGGTGCACAT
*
11011 GCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTCCCTGGGGCACATCACCGGAGAACCTAAC
518 GCTGGGCTCAGGCACGTGCTGGTGCCGCATTTTTTTCCCTGGGGCACATCACCGGAGAACCTAAC
* * * * *
11076 CGACGGCATTGGGGTTTCGGCGATTGGGGGGGCGGGGGGCGTGCGCACATGATGTGCGATGGGTG
583 CGACGGCATTGGGGTTCCGACGATTCGGGGGGCAGGGGGCGTGCGCACATGACGTGCGATGGGTG
*
11141 CTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTA
648 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTA
*
11206 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAATAGGGACACT
713 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACT
* * *
11271 TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAGGTTTTTTGTGCATGTAA
778 TTTTTCAAATGGTCACAAAATCCTGTACACTTCGACTTTTTAGCTGAAGTTTTTTGTGCATGCAA
* * *
11336 TCACAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACT
843 TCAAAAATACAAGGATCACATCAACCAAGTTTGGGGCCAAAAAT
* * * *
11380 CCTTCTGAAAAAATTTCAAAAAAATCCCCAACCGTAAAAAT-TTTTGAAAATCGTGAAAAATAGA
1 CCTTCTGAAAAAATTTTAAAAAAATCTCAAACCGT-AAAATGTTTTAAAAATCGTGAAAAATAGA
*
11444 AAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTGCAAG
65 AAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
** * * * **
11509 CCATAAAAATGGCATTGGCACAGAAAAAATGTGAAGATGTGCCTAAACCCACCTACCAATCTATC
130 CCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
*
11574 GATCCACGGCTTGCGCATCCCGCCTCAT-TGGCCGGCATAGTGCCCGCCCGCCCGCCCGCTCGTT
195 GATCCACGGCTTGCGCATCCCGCCTC-TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTT
* * * * * *
11638 TCGTCAGTTGGCTTAGGCATTCGAACTTCATTCCCAGTCTAAGATTAGACTAGATCGAGGGTTAC
259 TCGTCGGTTGGGTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGATCGAGGGTTGC
** * *
11703 GATAGAAGGATCAGCAGTACGCAAAGAGGGGCCCGACCAATTCCCGGCTTGCGCATCCTGCCCCT
324 GGCAGAAGGATCAGCAG-ACGCAATGAGGGGCCCGACCGATTCCCGGCTTGCGCATCCTGCCCCT
* ** *
11768 CTGGCTGGCTGAGCGCATGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
388 CTGGCCGGCTGAGCGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * ** *
11833 GTCTAAGCATATGGAGTTCATTCCCAGTCTATA-ATCGGACCGGACCGAGGGTTTTGGGTGCATA
453 GTCTAAGCACATGGAGTTCATTCCCAGTCTA-AGATCGGACCGAACCGAGGGTTACGGGTGCACA
* *
11897 TTCTTGGCTCGAGCCTGACCGACG-GCATTGGGGTGCCGCATTTTTTTTCACCTGGGGCACCATC
517 TGCTGGGCTC-AG---G--C-ACGTGC--T--GGTGCCGCA-TTTTTTTC-CCTGGGGCA-CATC
** * * * * **
11961 GTCGGAGAGCCTGACGGACGGCATTGGGGTTCCGATGATTCGGGGGG-AGGGGTTGTGCGCACAT
568 ACCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATTCGGGGGGCAGGGGGCGTGCGCACAT
* *
12025 GACGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGA
633 GACGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGA
* * *
12090 ACTCACA-CCCCTTAAAGAGCATTTGAGATTTTTCAGTTTTGCTGCCATTAGCCATTAAAGTGTC
698 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * *
12154 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGAATT
763 TGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGACTTTTTAGCTGAAGT
*
12219 TTTTTGTGCATGCCAA-CAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAAT
828 TTTTTGTGCATG-CAATCAAAAATACAAGGATCACATCAACCAAGTTTGGGGCCAAAAAT
* * * * *
12278 CCTTCTGAAAAAATTTTAAAAAAATCTCGAACCATAAAATGTTTCAAAAATCATGAAAAAAAGAA
1 CCTTCTGAAAAAATTTTAAAAAAATCTCAAACCGTAAAATGTTTTAAAAATCGTGAAAAATAGAA
* *
12343 AACGAGTCGTCTTACCATGAAACTTCACATGAAGGCTTAAGGGACGATTGTATGAATTTACAAGC
66 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
12408 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTGTCG
131 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * *
12473 ATCCACGGCTTGTGCATCCCCCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCAGTTCGTTTC
196 ATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTC
* * *
12538 GTCGGTTGGGTTAGGCATACGAAGTTCATTCCCAGTGTAAGATCAGACCAGA-CTGAGGGTTGTG
261 GTCGGTTGGGTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGATC-GAGGGTTGCG
* * * * * *
12602 GCAGTAGGATCAGCAG-CACACTGAGGGGCACCGGCCGATCCCCGGCTTGTGCATCCTGCCCCTC
325 GCAGAAGGATCAGCAGACGCAATGAGGGGC-CCGACCGATTCCCGGCTTGCGCATCCTGCCCCTC
* * * *
12666 TGGCCGGCTGAGCGCCCGCATGCTCATTTCTTAGGTTGACTTAGGCGTAAGGAGTTCATTCCCAG
389 TGGCCGGCTGAGCGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
12731 TCTAAG
454 TCTAAG
12737 ATCGGACTGG
Statistics
Matches: 1181, Mismatches: 151, Indels: 39
0.86 0.11 0.03
Matches are distributed among these distances:
886 14 0.01
887 427 0.36
888 14 0.01
891 1 0.00
893 3 0.00
894 2 0.00
895 1 0.00
896 10 0.01
897 109 0.09
898 465 0.39
899 93 0.08
900 42 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (886 bp):
CCTTCTGAAAAAATTTTAAAAAAATCTCAAACCGTAAAATGTTTTAAAAATCGTGAAAAATAGAA
AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
ATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTC
GTCGGTTGGGTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGATCGAGGGTTGCGG
CAGAAGGATCAGCAGACGCAATGAGGGGCCCGACCGATTCCCGGCTTGCGCATCCTGCCCCTCTG
GCCGGCTGAGCGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
TAAGCACATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGGGTGCACATGCT
GGGCTCAGGCACGTGCTGGTGCCGCATTTTTTTCCCTGGGGCACATCACCGGAGAACCTAACCGA
CGGCATTGGGGTTCCGACGATTCGGGGGGCAGGGGGCGTGCGCACATGACGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTT
TTCAAATGGTCACAAAATCCTGTACACTTCGACTTTTTAGCTGAAGTTTTTTGTGCATGCAATCA
AAAATACAAGGATCACATCAACCAAGTTTGGGGCCAAAAAT
Found at i:14057 original size:26 final size:26
Alignment explanation
Indices: 14020--14072 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14010 GTGGACTTAG
14020 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
14046 GCATAC-GAAGTTCATTCCTAGTCTAA
1 GCATACAG-AGTTCATTCCCAATCTAA
14072 G
1 G
14073 ATTGGATCCG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:23844 original size:887 final size:894
Alignment explanation
Indices: 22371--24397 Score: 2548
Period size: 891 Copynumber: 2.3 Consensus size: 894
22361 GTTGACTTAG
* * * ** * *
22371 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCA-GGTGCACATGCTAG
1 GCATATAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTAG-AGGGTGCACATGCTGG
* * * * * *
22435 GCTCGGGCATGTGCTGGTGCCATA-ATTT-TTTTCGCCCGGGGCAACATCGCCAGAGCATCGTCA
65 GCTCAGGCATGTGCTAGTG-CA-ACATTTGTTTTCACCCGGGGCACCAT--TC--AG-ATC-TCG
* * * * *
22498 AAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATTGGGGGGCCGGGGGGGGTGTGCGCACATGA
122 GAGAACCTGAACGGCGGCATTGGGGTTCCGGCGATTGAGGGGCCCGGGGGGGTGTGCGCACATGA
* *
22563 TGTGCGATGGGTGCTGGTACTTGG-CTTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAAC
187 TGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAAC
* * *
22627 TCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCG
252 TCACACCCCCTTAAAAAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCCG
*
22692 AAATGGGGCACTTTTTTCAAATGGTCACAAAAACCTATACACTTCGAGTTTTTAGCTGAATTTGT
317 AAATGGGGCACTTTTTTCAAATGGTCACAAAAACCTATACACTTCGAGCTTTTAGCTGAATTTGT
* * * * *
22757 TTGTGCATGCCCATAAAAATACAAGTATCGCATCTACCAAGTTTAGGGCCAAAACTCCTTCTGAA
382 TTGTGCATACCAAAAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAAAACTCCTTCTGAA
* *
22822 AAAATTTAAAAAAATTTCAAACCGTAGAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
447 AAAATTTAAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
22887 CTTACCATGAAACTTCACATGAAGGCTTAAGGGACCATCTTATGAATTTACAAGCCATAAATACG
512 CTTACCATGAAACTTCACATAAAGGCTTAAGGGACCATCTTATGAATTTACAAGCCATAAAAACG
* *
22952 GCATTGGCAAAGCTGAAATATGAAGATGTGCCTTAACCCACCTACCA-ACCTATCGATCCACGGC
577 GCATTGGCAAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACA-CTATCGATCCACGGC
* * *
23016 TTGCGCATCCC-TTCTCTCTGGCCG-GT-GTAAT-GCCCCCCCGCCCGTTCGTTTCGTCAGTT-G
641 TTGCGCATCCCGCT-TCTCTGGCCGAGTAGTAATCGCCCCCCCACCCGCTCGTTTCGTCAGTTGG
* ** ** ** *
23076 TCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATTGGACC-GAACCTTGGGTTATGGCAGCAAG
705 T-TTAGGCATACAGAGTTAATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTACAGCAACAAG
* * * * ** * *
23140 ATCGGCAGCATGTTGGGGGGGACCCGGCCGATCCCCAACTTGTGCATCCTGCCCCTCTGGCCGGC
768 ATCGACAGCACGCTGAGGGGGACCCAACCGATCCCCAACTTGCGCATCCTGCCCCTCTGGCCAGC
* * ** * * * *
23205 TGAGCGCCTGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 TGAGCGCCCGAACGCTAATTTCGTGAGTTAACTTAGGCATACAGAGTTAATTCCCAGTCTAA
* * * *
23267 GCATATAGAGTTCTTTCCCAGTGTAAGATCGGATC-GAACCAAGGGTAGAGGGTGCACATGTTGG
1 GCATATAGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCAAGGGTAGAGGGTGCACATGCTGG
* **
23331 GCTCGGGCATGTGCTAGTG-AAGCATTT-TTTTTGCCCGGGGCACCA-TC-G-T-T-GGAGAACC
65 GCTCAGGCATGTGCTAGTGCAA-CATTTGTTTTCACCCGGGGCACCATTCAGATCTCGGAGAACC
* ** * *
23389 TGAACGACGGCATTGGGGTTTTGGTGATTGATGGGCCCGGGGGGGTGTGCGCACATGATGTGCGA
129 TGAACGGCGGCATTGGGGTTCCGGCGATTGAGGGGCCCGGGGGGGTGTGCGCACATGATGTGCGA
* * ** *
23454 TAGGTGCTAGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCATACC
194 TGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACC
* * *
23519 CCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTTCCAGTAGCAATTAAAGTGTCTGAAATGGG
259 CCCTTAAAAAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCCGAAATGGG
* * * *
23584 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGCTTTTAGCTTAATTTTTTTGTGC
324 G-CACTTTTTTCAAATGGTCACAAAAACCTATACACTTCGAGCTTTTAGCTGAATTTGTTTGTGC
* * * *
23649 ATACCAAAAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAAAATT
388 ATACCAAAAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAAAACTCCTTCTGAAAAAA-T
** * * *
23714 TTAAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGC
452 TTAAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTAC
*
23779 CATGAAACTTCACATAAAGGCTTAAGGGACCAT-TGTATGAATTTACAAGCCATAAAAATGGCAT
517 CATGAAACTTCACATAAAGGCTTAAGGGACCATCT-TATGAATTTACAAGCCATAAAAACGGCAT
* *
23843 TGGCAAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATTGATCCACGGCTTGCG
581 TGGCAAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGCG
** * *
23908 CATCCCGCTTCTCTGGCCGACGTAGTGCTCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGTTTAG
646 CATCCCGCTTCTCTGGCCGA-GTAGTAATCGCCCCCCCACCCGCTCGTTTCGTCAGTTGGTTTAG
* * * * * * *
23973 GTATACATAGTTCATTCCCAGTCTAAGATCATACCAGATCGAGGGTTGCAGCAACAGGATCGACA
710 GCATACAGAGTTAATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGCAACAAGATCGACA
** * * *
24038 GCACGCTGAGGGGGACCCAACCGATCCCCGGCTTGCGTATCCTGCCTCTCTGGCCAGCTGAGGGC
775 GCACGCTGAGGGGGACCCAACCGATCCCCAACTTGCGCATCCTGCCCCTCTGGCCAGCTGAGCGC
24103 CCGAACGCTAATTTCGTGAGTTAACTTAGGCATACAGAGTTAATTCCCAGTCTAA
840 CCGAACGCTAATTTCGTGAGTTAACTTAGGCATACAGAGTTAATTCCCAGTCTAA
* * * *
24158 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGGTGCACATGCTGGG
1 GCATATAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTAGAGGGTGCACATGCTGGG
* * *
24223 CTCAGGCATGTGCTGGTGCCACATTTGTTTTCACCCGTGGCACCATTGTCAGAGCATCGTCGGAG
66 CTCAGGCATGTGCTAGTGCAACATTTGTTTTCACCCGGGGCACCA-T-TC--AG-ATC-TCGGAG
* * * *
24288 AACCTGATCGGCGGCATTGGGGTTCCGACGATT-AGGGGGGCCGAGGGGGTGTGCGCACATGATG
125 AACCTGAACGGCGGCATTGGGGTTCCGGCGATTGA-GGGGCCCGGGGGGGTGTGCGCACATGATG
24352 TGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCT
189 TGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCT
24398 GTCATAACGT
Statistics
Matches: 967, Mismatches: 133, Indels: 55
0.84 0.12 0.05
Matches are distributed among these distances:
884 76 0.08
885 104 0.11
886 113 0.12
887 194 0.20
888 2 0.00
889 3 0.00
890 3 0.00
891 251 0.26
892 21 0.02
893 1 0.00
894 1 0.00
895 24 0.02
896 69 0.07
898 1 0.00
900 1 0.00
902 2 0.00
903 101 0.10
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (894 bp):
GCATATAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTAGAGGGTGCACATGCTGGG
CTCAGGCATGTGCTAGTGCAACATTTGTTTTCACCCGGGGCACCATTCAGATCTCGGAGAACCTG
AACGGCGGCATTGGGGTTCCGGCGATTGAGGGGCCCGGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCC
CTTAAAAAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCCGAAATGGGGC
ACTTTTTTCAAATGGTCACAAAAACCTATACACTTCGAGCTTTTAGCTGAATTTGTTTGTGCATA
CCAAAAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAAAACTCCTTCTGAAAAAATTTAA
AAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTACCATG
AAACTTCACATAAAGGCTTAAGGGACCATCTTATGAATTTACAAGCCATAAAAACGGCATTGGCA
AAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGCGCATCC
CGCTTCTCTGGCCGAGTAGTAATCGCCCCCCCACCCGCTCGTTTCGTCAGTTGGTTTAGGCATAC
AGAGTTAATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGCAACAAGATCGACAGCACGC
TGAGGGGGACCCAACCGATCCCCAACTTGCGCATCCTGCCCCTCTGGCCAGCTGAGCGCCCGAAC
GCTAATTTCGTGAGTTAACTTAGGCATACAGAGTTAATTCCCAGTCTAA
Found at i:25119 original size:60 final size:58
Alignment explanation
Indices: 24874--25334 Score: 579
Period size: 59 Copynumber: 7.7 Consensus size: 58
24864 TCTTGCACAG
* * * *
24874 GGAAAATTGATACTTTAAACTTTTCCCTAAAAATATTCTTTTGAAACTTTA-ATTTAGA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAACTTTATTTTTA-A
* * *
24932 GGAAGATTGATACTTTCAACTTTTCCTCAAAAAT-TGATTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATAT--TTTTTTGAAACTTTATTTTTAA
* * *
24991 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCT-TTTTTTTAAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA--TATTTTTTTGAAACTTTATTTTTAA
* *
25050 GGAAAATTGATACTTTCAACTTTTCCCCAAAGATATTTTTTTGGAAACTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT-GAAACTTT-ATTTTTAA
* * * * *
25110 GGAAGATTGATACTTTTAACTTTTCCTCAAAAACCATTTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-TATTTTTTTGAAACTTTATTTTTAA
25169 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATATATTTTTTTTGGAAACTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCC--AAA-A-ATA-TTTTTTT-GAAACTTTATTTTTAA
25233 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGGAAA-TTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTT-GAAACTTTATTTTTAA
*
25293 GGAAAATTGATACTTTTAACTTTTCCCCAAAAATATTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
25335 TATTTTTATT
Statistics
Matches: 359, Mismatches: 28, Indels: 32
0.86 0.07 0.08
Matches are distributed among these distances:
57 2 0.01
58 44 0.12
59 135 0.38
60 95 0.26
61 27 0.08
62 5 0.01
63 8 0.02
64 43 0.12
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAACTTTATTTTTAA
Found at i:25135 original size:119 final size:117
Alignment explanation
Indices: 24874--25334 Score: 583
Period size: 119 Copynumber: 3.9 Consensus size: 117
24864 TCTTGCACAG
* * * *
24874 GGAAAATTGATACTTTAAACTTTTCC-CTAAAAA--TATTCTTTTGAAACTTTA-ATTTAGAGGA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAACCT-TTTTTTTGAAATTTTATTTTTA-AGGA
* * * *
24935 AGATTGATACTTTCAACTTTTCCTCAAAA-ATTGATTTTTTGAAAATTTATTTTTAA
63 AAATTGATACTTTCAACTTTTCCCCAAAATATT--TTTTTGGAAACTTTATTTTTAA
*
24991 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTAAAATTTTATTTTTAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTGAAATTTTATTTTTAAGGAAAA
*
25056 TTGATACTTTCAACTTTTCCCCAAAGATATTTTTTTGGAAACTTTGATTTTCAA
66 TTGATACTTTCAACTTTTCCCCAAA-ATATTTTTTTGGAAACTTT-ATTTTTAA
* * *
25110 GGAAGATTGATACTTTTAACTTTTCCTCAAAAACCATTTTTTTGAAATTTTATTTTTAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTGAAATTTTATTTTTAAGGAAAA
25175 TTGATACTTTCAACTTTTCCCCAAAAATATATATTTTTTTTGGAAACTTTATTTTTAA
66 TTGATACTTTCAACTTTTCCCC---AA-A-ATA-TTTTTTTGGAAACTTTATTTTTAA
* **
25233 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGGAAA-TTTATTTTTAAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-CCTTTTTTTT-GAAATTTTATTTTTAAGGAA
*
25297 AATTGATACTTTTAACTTTTCCCCAAAAATATTTTTTT
64 AATTGATACTTTCAACTTTTCCCC-AAAATATTTTTTT
25335 TATTTTTATT
Statistics
Matches: 307, Mismatches: 23, Indels: 26
0.86 0.06 0.07
Matches are distributed among these distances:
117 30 0.10
118 56 0.18
119 103 0.34
120 6 0.02
121 1 0.00
122 5 0.02
123 41 0.13
124 61 0.20
125 4 0.01
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (117 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTGAAATTTTATTTTTAAGGAAAA
TTGATACTTTCAACTTTTCCCCAAAATATTTTTTTGGAAACTTTATTTTTAA
Found at i:25358 original size:5 final size:5
Alignment explanation
Indices: 25350--25438 Score: 73
Period size: 5 Copynumber: 18.6 Consensus size: 5
25340 TTATTTAAAG
* *
25350 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAA- AATAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAAAT AAAAT
* * *
25399 AAAA- AAAGT AAAAC AAAA- ATAA- AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
25439 GGTAAAAAGG
Statistics
Matches: 68, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
3 3 0.04
4 12 0.18
5 47 0.69
6 2 0.03
7 4 0.06
ACGTcount: A:0.79, C:0.02, G:0.03, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:25390 original size:7 final size:7
Alignment explanation
Indices: 25380--25429 Score: 50
Period size: 7 Copynumber: 7.3 Consensus size: 7
25370 AATAAAAGTG
25380 AAAATAA
1 AAAATAA
*
25387 AAAATAT
1 AAAATAA
25394 AAAATAA
1 AAAATAA
*
25401 AAAA-AGT
1 AAAATA-A
*
25408 AAAA-CA
1 AAAATAA
25414 AAAATAA
1 AAAATAA
25421 AAAATAA
1 AAAATAA
25428 AA
1 AA
25430 TAAAATAAAG
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
6 5 0.14
7 30 0.86
ACGTcount: A:0.82, C:0.02, G:0.02, T:0.14
Consensus pattern (7 bp):
AAAATAA
Found at i:25397 original size:14 final size:14
Alignment explanation
Indices: 25380--25429 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
25370 AATAAAAGTG
25380 AAAATAAAAAATAT
1 AAAATAAAAAATAT
25394 AAAATAAAAAA-AGT
1 AAAATAAAAAATA-T
* *
25408 AAAA-CAAAAATAA
1 AAAATAAAAAATAT
25421 AAAATAAAA
1 AAAATAAAA
25430 TAAAATAAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
13 10 0.33
14 20 0.67
ACGTcount: A:0.82, C:0.02, G:0.02, T:0.14
Consensus pattern (14 bp):
AAAATAAAAAATAT
Found at i:25416 original size:27 final size:28
Alignment explanation
Indices: 25355--25438 Score: 89
Period size: 27 Copynumber: 2.9 Consensus size: 28
25345 TAAAGAAAAT
* *
25355 AAAATAATAAAACAAAATAAAAGTGAAAATAA
1 AAAATAA-AAAATAAAATAAAA-T-AAAA-CA
* *
25387 AAAATATAAAATAAAA-AAAGTAAAACA
1 AAAATAAAAAATAAAATAAAATAAAACA
25414 AAAATAAAAAATAAAATAAAATAAA
1 AAAATAAAAAATAAAATAAAATAAA
25439 GGTAAAAAGG
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
27 16 0.36
28 11 0.24
29 1 0.02
30 3 0.07
31 8 0.18
32 6 0.13
ACGTcount: A:0.79, C:0.02, G:0.04, T:0.15
Consensus pattern (28 bp):
AAAATAAAAAATAAAATAAAATAAAACA
Found at i:25420 original size:34 final size:34
Alignment explanation
Indices: 25350--25445 Score: 103
Period size: 32 Copynumber: 2.9 Consensus size: 34
25340 TTATTTAAAG
* * *
25350 AAAATAAAATAATAAAACAAAATAAAAGT-GAA-A
1 AAAATAAAA-AATAAAATAAAATAAAGGTAAAACA
* *
25383 ATAA-AAAATATAAAATAAAA-AAA-GTAAAACA
1 AAAATAAAAAATAAAATAAAATAAAGGTAAAACA
25414 AAAATAAAAAATAAAATAAAATAAAGGTAAAA
1 AAAATAAAAAATAAAATAAAATAAAGGTAAAA
25446 AGGATACTAA
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
29 2 0.04
30 5 0.10
31 14 0.27
32 19 0.37
33 6 0.12
34 6 0.12
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (34 bp):
AAAATAAAAAATAAAATAAAATAAAGGTAAAACA
Found at i:25445 original size:11 final size:10
Alignment explanation
Indices: 25350--25438 Score: 73
Period size: 9 Copynumber: 9.3 Consensus size: 10
25340 TTATTTAAAG
25350 AAAATAAAAT
1 AAAATAAAAT
*
25360 --AATAAAAC
1 AAAATAAAAT
25368 AAAATAAAAGT
1 AAAATAAAA-T
25379 GAAAATAAAA-
1 -AAAATAAAAT
*
25389 AATATAAAAT
1 AAAATAAAAT
*
25399 AAAA-AAAGT
1 AAAATAAAAT
*
25408 AAAACAAAA-
1 AAAATAAAAT
*
25417 ATAA-AAAAT
1 AAAATAAAAT
25426 AAAATAAAAT
1 AAAATAAAAT
25436 AAA
1 AAA
25439 GGTAAAAAGG
Statistics
Matches: 63, Mismatches: 8, Indels: 16
0.72 0.09 0.18
Matches are distributed among these distances:
8 11 0.17
9 22 0.35
10 21 0.33
12 9 0.14
ACGTcount: A:0.79, C:0.02, G:0.03, T:0.16
Consensus pattern (10 bp):
AAAATAAAAT
Found at i:25487 original size:15 final size:15
Alignment explanation
Indices: 25469--25500 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
25459 AACCTAATCT
*
25469 AATAAATAAAAACTA
1 AATAAATAAAAAATA
25484 AATAAATAAAAAATA
1 AATAAATAAAAAATA
25499 AA
1 AA
25501 AAAAAATAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (15 bp):
AATAAATAAAAAATA
Found at i:26375 original size:7 final size:7
Alignment explanation
Indices: 26326--26415 Score: 54
Period size: 7 Copynumber: 11.6 Consensus size: 7
26316 CACAGCCTTA
*
26326 AAAAAAG
1 AAAAAAT
26333 AAAAAAT
1 AAAAAAT
26340 AATAATAAT
1 AA-AA-AAT
*
26349 CAGATAAAT
1 -A-AAAAAT
* *
26358 GAAAAAG
1 AAAAAAT
26365 AAAAAAT
1 AAAAAAT
26372 AAAAAAT
1 AAAAAAT
26379 AAAAAAT
1 AAAAAAT
26386 AATAATAAT
1 AA-AA-AAT
26395 AACAGATAAT
1 AA-A-A-AAT
*
26405 CAAAAAT
1 AAAAAAT
26412 AAAA
1 AAAA
26416 TAAGATAAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
7 39 0.59
8 5 0.08
9 13 0.20
10 8 0.12
11 1 0.02
ACGTcount: A:0.74, C:0.03, G:0.06, T:0.17
Consensus pattern (7 bp):
AAAAAAT
Found at i:26392 original size:20 final size:19
Alignment explanation
Indices: 26354--26467 Score: 57
Period size: 20 Copynumber: 5.4 Consensus size: 19
26344 ATAATCAGAT
*
26354 AAATGAAAAAGAAAAAATAAA
1 AAAT-AAAAA-AAATAATAAA
26375 AAATAAAAAATAATAATAATA
1 AAATAAAAAA-AATAATAA-A
*
26396 ACAGATAATCAAAAATAAAATAAGA
1 A-A-ATAA--AAAAA-ATAATAA-A
** * *
26421 TAAATCCAAAAAATATTACA
1 -AAATAAAAAAAATAATAAA
*
26441 AGATAAAAAAAATAATAAA
1 AAATAAAAAAAATAATAAA
26460 TAAATAAA
1 -AAATAAA
26468 TTATAATATA
Statistics
Matches: 70, Mismatches: 14, Indels: 19
0.68 0.14 0.18
Matches are distributed among these distances:
19 15 0.21
20 19 0.27
21 10 0.14
22 6 0.09
23 4 0.06
24 3 0.04
25 12 0.17
26 1 0.01
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.18
Consensus pattern (19 bp):
AAATAAAAAAAATAATAAA
Found at i:26476 original size:40 final size:40
Alignment explanation
Indices: 26365--26476 Score: 90
Period size: 43 Copynumber: 2.7 Consensus size: 40
26355 AATGAAAAAG
* *
26365 AAAAAATAAAAAATAAA-AAATAATAATAATAACAGATAATC
1 AAAAAATAATAAATAAATAAAT-ATAATATTAACAGATAA-C
*
26406 AAAAATAAAATAAGATAAATCCAAA-A-AATATT-ACAAGATAA-
1 AAAAA-ATAATAA-ATAAAT--AAATATAATATTAAC-AGATAAC
26447 AAAAAATAATAAATAAATAAATTATAATAT
1 AAAAAATAATAAATAAATAAA-TATAATAT
26477 AATAATAAAT
Statistics
Matches: 58, Mismatches: 4, Indels: 19
0.72 0.05 0.23
Matches are distributed among these distances:
37 3 0.05
39 7 0.12
40 11 0.19
41 10 0.17
42 7 0.12
43 16 0.28
44 1 0.02
46 3 0.05
ACGTcount: A:0.71, C:0.04, G:0.03, T:0.22
Consensus pattern (40 bp):
AAAAAATAATAAATAAATAAATATAATATTAACAGATAAC
Found at i:26625 original size:22 final size:23
Alignment explanation
Indices: 26593--26638 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
26583 TAAAATGCCT
26593 AAAATACAAAAAAATAAAAAATA
1 AAAATACAAAAAAATAAAAAATA
* *
26616 AAAATA-AAAATAATACAAAATA
1 AAAATACAAAAAAATAAAAAATA
26638 A
1 A
26639 GAACCGGATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.15
Consensus pattern (23 bp):
AAAATACAAAAAAATAAAAAATA
Found at i:27005 original size:42 final size:41
Alignment explanation
Indices: 26849--27105 Score: 381
Period size: 42 Copynumber: 6.1 Consensus size: 41
26839 TTTGAACAAA
* *
26849 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAA-ATAAATT
*
26892 GCTCCTCTAAACAGAGGCACCACCAC-TTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAA-TAAATT
*
26933 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
*
26974 GCTCCTCTAAACAGAGGCACCATGACTTTTGGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAATAAATT
* *
27016 GCTCTTCTAAACAGAGGCACCATGACTTTTGGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAATAAATT
*
27058 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAATAAATT
27100 GCTCCT
1 GCTCCT
27106 TGACAAACAT
Statistics
Matches: 200, Mismatches: 11, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
40 1 0.00
41 66 0.33
42 110 0.55
43 23 0.12
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.24
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
Found at i:27768 original size:10 final size:10
Alignment explanation
Indices: 27733--27786 Score: 58
Period size: 10 Copynumber: 5.6 Consensus size: 10
27723 TTCACTTCTT
27733 TTTTTTTTCA
1 TTTTTTTTCA
**
27743 TCATTTTTCA
1 TTTTTTTTCA
27753 -TTTTTTTCA
1 TTTTTTTTCA
27762 TTTTTTTTCA
1 TTTTTTTTCA
**
27772 CCTTTTTT-A
1 TTTTTTTTCA
27781 TTTTTT
1 TTTTTT
27787 CAAGCATAGT
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
9 12 0.34
10 23 0.66
ACGTcount: A:0.11, C:0.13, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTTTTTTCA
Found at i:27768 original size:19 final size:20
Alignment explanation
Indices: 27734--27786 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 20
27724 TCACTTCTTT
**
27734 TTTTTTTCATCATTTTTCA-
1 TTTTTTTCATTTTTTTTCAC
27753 TTTTTTTCATTTTTTTTCAC
1 TTTTTTTCATTTTTTTTCAC
*
27773 CTTTTTT-ATTTTTT
1 TTTTTTTCATTTTTT
27787 CAAGCATAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
19 24 0.80
20 6 0.20
ACGTcount: A:0.11, C:0.13, G:0.00, T:0.75
Consensus pattern (20 bp):
TTTTTTTCATTTTTTTTCAC
Found at i:38911 original size:15 final size:15
Alignment explanation
Indices: 38887--38936 Score: 55
Period size: 15 Copynumber: 3.2 Consensus size: 15
38877 CAGATAAACG
*
38887 AAAAAGAAAAAAATA
1 AAAAATAAAAAAATA
38902 AAAAATAAAAAAATA
1 AAAAATAAAAAAATA
* *
38917 ACAGATAATCAAAAATA
1 AAAAATAA--AAAAATA
38934 AAA
1 AAA
38937 TAAGATAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
15 20 0.69
17 9 0.31
ACGTcount: A:0.80, C:0.04, G:0.04, T:0.12
Consensus pattern (15 bp):
AAAAATAAAAAAATA
Found at i:38982 original size:15 final size:15
Alignment explanation
Indices: 38964--39024 Score: 50
Period size: 15 Copynumber: 3.8 Consensus size: 15
38954 ATATTACAAG
38964 ATAAAAAAATAATAA
1 ATAAAAAAATAATAA
* *
38979 ATAAATAAATTATAA
1 ATAAAAAAATAATAA
38994 TATAATAATAAATATATAA
1 -ATAA-AA-AAATA-ATAA
* *
39013 CTATAAAAATAA
1 ATAAAAAAATAA
39025 AATACATATA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
15 14 0.39
16 9 0.25
17 3 0.08
18 6 0.17
19 4 0.11
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.30
Consensus pattern (15 bp):
ATAAAAAAATAATAA
Found at i:39024 original size:26 final size:26
Alignment explanation
Indices: 38964--39034 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 26
38954 ATATTACAAG
*
38964 ATAAAAA-AATAATAAATAAATAAAT
1 ATAAAAATAATAATAAATATATAAAT
* *
38989 -TATAATATAATAATAAATATATAACT
1 ATA-AAAATAATAATAAATATATAAAT
*
39015 ATAAAAATAA-AATACATATA
1 ATAAAAATAATAATAAATATA
39035 AATATTAACA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
24 2 0.05
25 12 0.32
26 22 0.58
27 2 0.05
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (26 bp):
ATAAAAATAATAATAAATATATAAAT
Found at i:40771 original size:26 final size:26
Alignment explanation
Indices: 40735--40787 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
40725 GTTGACTTAG
*
40735 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
40761 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
40787 G
1 G
40788 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:42512 original size:11 final size:11
Alignment explanation
Indices: 42496--42520 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
42486 TTGACTTAGG
42496 CATACGGAGTT
1 CATACGGAGTT
42507 CATACGGAGTT
1 CATACGGAGTT
42518 CAT
1 CAT
42521 TCCCAGTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (11 bp):
CATACGGAGTT
Found at i:43405 original size:26 final size:26
Alignment explanation
Indices: 43376--43428 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
43366 GTTAACTTAG
43376 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
* *
43402 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
43428 G
1 G
43429 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:44713 original size:882 final size:876
Alignment explanation
Indices: 39227--46837 Score: 9955
Period size: 900 Copynumber: 8.6 Consensus size: 876
39217 GGTGTCTACA
*
39227 ATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
1 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
39291 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACA
66 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
*
39356 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCCACAAAAATACAAGGATCACGTCTACCAAG
131 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * *
39421 TTTAGGGCCAAAACTCCTTCTGAAAAAA-TTAAAAAAAATCTCGAATCGTAAAAAGTTTCAAAAA
196 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
*
39485 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
261 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
39550 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
326 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
*
39615 CCTACCACCCTATTGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCG--C-C
391 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGC
* * *
39677 CCGCCCGCTCCTTTCGTCGGTTGCCTTAGGCTTACGGAGTTCATTCCCAGTCTAAGATCAGACCA
456 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * *
39742 GACCGAGGGTTGCGGCAGCAGGATTGGCAGCACACTGAGAGGGACCCGACTGATCCCCGGCTTGC
521 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACTGAGGGGGACCCGACCGATCCCCGACTTGC
39807 GCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
586 GCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
**
39872 GAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGC
651 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGC
* *
39937 ATGTGCTGGTGCCGCATTTTTTTTTGCCC-GGGCACCATCGTCGGAGCATCGTC-GAGAACCTGA
716 ATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGA
* * **
40000 CCTGGCGACATTAGGGTTCC-AGCGA-CAGGGGGGCC-GGGGGTGTGCGCACATGATGTGCGATG
781 CC-GGCGGCATTGGGGTTCCGA-CGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
40062 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
844 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
40095 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
1 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
40160 GCCAGTAGCCATTAAAGTGTCTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATAC
66 GCCAGTAGCCATTAAAGTGTC-TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC
*
40225 ACTTCGAGTTTTTAGCTGAATTTTATTGTGCATGCC-ACAAAAATACAAGGATCACGTCTACCAA
130 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
40289 GTTTGGGGCCAAAA-TCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
195 GTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
*
40353 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGCACCATT
260 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
40418 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCC
325 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCC
* *
40483 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTTTGGCCGGCGTAGTGCCCG-CCG
390 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCG
* ** *
40547 CCCGCTCGCTTTC-TTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCTGA
455 CCCGCCCGC--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* ** * *
40611 CCAGACCGAGGGTTACGGCAGCAAAATCAGCAGCACGCTGAGGGGGACCCGA-CGATCCCCGACT
518 CCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACTGAGGGGGACCCGACCGATCCCCGACT
* *
40675 TGCGAATCCTGCCCCTCTGTCCG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
583 TGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-T-----T
*
40739 ACGGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
642 A--G-G--------CA---T-A-C----GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * *
40804 GGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGAGCCGTATTTGTTTTCGCTCGGGGCAC
687 GGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCAC
*
40869 CAT---C---G---C-T-GGAGAACCTGACC-GCGGCATTGGGGTTCCGGCGATT-GGGGGGCCG
752 CATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCG
40921 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
817 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
40981 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
1 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
41046 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCCTATACA
66 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
41111 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-ACAAAAATACAAGGATCACGTCTACCAAG
131 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* *
41175 TTTAGGGCCAAAACTCCTTCTGAAAAAA-TTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAA
196 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* *
41239 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCGTTG
261 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
41304 T-TGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
326 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * * * *
41368 CCTAACACCCTATCGTTCCATGGCTTACGCATCCCGCCTCTCTGGCCGACCTAGTGCCTGCCCAC
391 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGC
* * * *
41433 CCGCCCGCTCGTTTCGTCGGTTGGCATAGGCATACGGAGTTCATTCCTATTCTAAGATCAGACTA
456 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * ** * *
41498 GACCAAGGGTTGCGACAGCAGGA-CTGGCAGCACATTGAGGGGGACCCGGTCGATCCTCGGCTTG
521 GACCGAGGGTTGCGGCAGCAGGATC-GGCAGCACACTGAGGGGGACCCGACCGATCCCCGACTTG
* ** * *
41562 CGCATCCTACCCCTCTGGCC-AGCTGAATGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATA
585 CGCATCCTGCCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * *
41626 CGGGGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGTGGGTGCCCATGCTGGGCTCAG
649 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGG
* * * ** *
41691 GCATGTACTGGTGCCGCATTGTTTTTCGCCTGGGGCACCATCATCGAAGCATCGTCGGAGAACCT
714 GCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
* * * * * * * * * *
41756 AACCGGTGGCATTGTGTTTTCGGCAATTGCGGGGGGTCAGGGGGTGTGCGCACATGATGTGTGAT
779 GACCGGCGGCATTGGGGTTCCGACGATTG-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
41821 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
843 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
41855 ATCCCTCATCAAACCTTGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
1 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * *
41920 ACCAGTAGCCATTAAAGTGTATGAAATTGGGACACTTTTTTCAAATTGTCACAAAATCCTGTACA
66 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
* * * * *
41985 CTTTGCGTTTCTAGCTGAATTTTTTTGGGCTTGCCCAA-AAAAATACAAGGATCACGTCTACCAA
131 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CCAACAAAAATACAAGGATCACGTCTACCAA
* *
42049 GTTTGGGGCCAAAACTCCTTCTGAAAAAA-TTTAAAAAAATCCTGAACCGTAAAAAGATTCAAAA
195 GTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
*
42113 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACATGAAGGCTTAAGGGACCATT
260 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
*
42178 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCC
325 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCC
* * * * *
42243 ACCT-GC-CCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGTCGACGTAGTTCCCGCCCG
390 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCG
* * * * *
42306 CCCGCCCGCTCATTTCATCGGTTGGTTTAGGCATAAGGAGTTCATTCCCAGTCTAAGATTAGACC
455 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
** * * ** * * * *
42371 -GAACCGAGGGTTGCGATAGTAGGATCGGCAGCACGCCAAGGGGCACCCGGCCAATCCCCGGCTT
520 AG-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACTGAGGGGGACCCGACCGATCCCCGACTT
* * *
42435 GCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCATGTTCATTTCGTGGGTTGACTTAGGCATA
584 GCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* ** * * * * * *
42500 CGGAGTTCATACGGAGTTCATTCCCAG-TCTAAAATCGGACCGGAGGGTTGCGAGTGCACATGTT
649 CGGAGTTCATTCCCAG-TC--T--AAGATC--AGACCAGACC-GAGGGTTGCGGGTGCACATGCT
* * * * * * * *
42564 GGGCTCAGGCATGTGCTGGTGCCGTATTTTTTTTCGTCCGGGCCACCATCGTCGGTGCATCGCCT
706 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCG
*
42629 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGAT
771 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGAT
*
42694 GTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCT
836 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
** * * * *
42735 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAAAATTTGAGTTTTTGCAAGTTTGTT
1 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
42800 GCCAATAGCCATTAAAGTGTCTGAAAAGGGGACATTTTTTTCAAATGGTCACAAAATCCTGTACA
66 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
*
42865 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAG
131 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * **
42930 TTTTGGGCCAAAACTCATTCTGAGAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAA
196 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* * * *
42995 TCATAAAAAATAGAAAATGAGTCATCTTGCCAAGAAACTTCACATGAAGGCTTAAGGGACCATT-
261 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
*
43059 TATGAATTTACAAGCCATTAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
326 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
* * *
43124 CCTACCACCGTATCGATCCACGGCTTGCGCATCCCGCCTCTTTGGCCAACGTAGTGCCCGCCCGC
391 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGC
* * * * *
43189 CCGCCCGCTTGTTTCATCGGTTAGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATCATACCA
456 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * ** * *
43254 GA-TGAGGGTTGTGGTAGCAGGATCGATAGCACACTGAGGGGGATCCGGCCGATCCCC-AGCTTG
521 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACTGAGGGGGACCCGACCGATCCCCGA-CTTG
* * *
43317 CGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTAACTTAGGCATAC
585 CGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* *
43382 GGAGTCCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGG
650 GGAGTTCATTCCCAGTCTAAG---AT-CAG---A----C---C----A---GA-C----CGAGGG
* * * *
43447 TTACGGGTGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCA-TTCTTTTCGCCCGGGGCACCA
689 TTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCA
* * * * **
43511 TCACCGGAGCATCGTCGGAGAACCTGACCGACGACATTGGGGTTCTC-ACGATTAGGGGGGTTGG
754 TCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTC-CGACGATTGGGGGGGCCGG
* *
43575 GGGG-GACTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCT
818 GGGGTG--TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
43635 ATCCCTCATCAAACCTTGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCT
1 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
43700 ACCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCCTGTACA
66 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
* * * * *
43765 CTTTGAGTTTTTAGCTGAATTTTTTTGTGCATCCCAAAAAAAATACAAGTATCATGTCTACCAAG
131 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* *
43830 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTAAAAAA
196 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* * * * **
43895 TCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCAAATGAAGGCTTAGGGGACCGCTG
261 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
* * ***
43960 TATGAATTCACAAGCCATAAAAATCGCATTGGCACCACAGAAATATG-AGATGTGCCTAAACCCA
326 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * *
44024 CCTACCACCGTAACGATCCAAGGCTTGCACATCTCGCCTCTCTGGCCGACGTAGTGCCCGCCCGC
391 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGC
* * * * * *
44089 CCGCCCCCCACTCTTTTTGTCAGTTGGCTTAGGCATACGTAGTTCATTCACAGTCTAAGAT-ATG
456 CCG---CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-G
*** * * * ** *
44153 ATTGGACCAAGGGTTACGGTAGCAGGATCGGCAGCACGTTGAGGGGGACCCGACTGATCCCCGAC
517 ACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACTGAGGGGGACCCGACCGATCCCCGAC
* * ** *
44218 TTGCTCATCCTACCTTTCAGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
582 TTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
*
44283 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGGTGCACATGCTGGGCTC
647 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTC
* * * * * * * * *
44348 GGGCATGTGCTGGTGTCACATTTTTTTTTTTGCCCGGGCCACCATCGCCGGAACTTTGCCAGAGA
712 GGGCATGTGCTGGTGCCGCA--TTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * *
44413 AACTGACTGGTGGCATTGGGGTTCCGACGATTGGGGGGGCCGAGGGGGGCGTGCACACATGATGT
775 ACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCC--GGGGGGTGTGCGCACATGATGT
* *
44478 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCT
838 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
44517 ATCCCTCATCAAACCTCGAGACCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGTTTTGCT
1 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
44582 GCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
66 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
* * * *
44647 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGACAAAAAAAATACGAGGATCACATCTACCAAG
131 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * *
44712 TTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAATCCTGAACCGTAAAAAATTTAAAAAA
196 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
44777 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
261 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
* *
44842 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAGACCCA
326 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
* *
44907 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCACCCAC
391 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGC
* ** ** * * * * ***
44972 CCACCCATTATTTTCGTCAGTTGGCTCAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATTG
456 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* ** * * * * * * *
45037 GACTGAGGGTTGTAGCAGCAGGATCGACAGCACACTAAGGGGGACTCGGCCAATCCCTGGCTTGC
521 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACTGAGGGGGACCCGACCGATCCCCGACTTGC
* * * * * * *
45102 GTATCCTGCCCCTCTGGCTGGCTGAGCGCCCGTATGCTCGTTTCATGGGTTAACTTAGGCATACG
586 GCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *
45167 TAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTATAAGATCGAACCAGACCGAGGGT
651 GAGTTCATT-CC---C--AG--T-C-----T-A-----AG-AT--CA--G-ACCAGACCGAGGGT
* * *
45232 TGCAGGTGCACATGCTGGGCTCAGGCATGTGCTGATGCCGCATTTTTTTTCG-CCGGGGCACCAT
690 TGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCAT
** * *
45296 CGCTAGAGCATCGTCGGAAAACCTGACCGGCGGCAATGGGGTTCCGACGATT-GGGGGGCCGGGG
755 CGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGG
45360 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
820 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
45417 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
1 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
45482 GCAAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
66 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
*
45547 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAACAATACAAGGATCACCTCTACCAA
131 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA-AATACAAGGATCACGTCTACCAA
* * *
45611 GTTTGGGGCCAAAACACCTTTTGAAAAAATTTTAAAAAAAATCCCAAACCGTAAAAAGTTTCAAA
195 GTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAAAAAATCCCGAACCGTAAAAAGTTTCAAA
* *
45676 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGATCAT
259 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAT
* * *
45741 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCTTGGTAGAAATTTGAAGATGTGCCTAAACC
324 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACC
* * * * *
45806 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCATAGTGCCCGCTC
389 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCC
* * * * *
45871 GCTCGCCCGCTCGTTTCGTCGGTTGGTTTAAGCATATGGAGTTCATTCCTAGTCTAAGATCAGAC
454 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * *
45936 CTGATCGAGGGTTGTGGCAGTAAGATTGGCAGCAC-GTAGAGGGGGACCCGACCGATCCCC-AGC
519 CAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACT-GAGGGGGACCCGACCGATCCCCGA-C
* * * ** *
45999 TTGCGCAACGTGCCCCTCTGGCCGGCTGAATGCCCGCATGCTCGTTT-GATGGGTTGACTTAGGC
582 TTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCG-TGGGTTGACTTAGGC
46063 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
646 ATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A--C------CAGA-C---C-G
* * * *
46128 AGGGTTGCGGGTGCACATGCTGAGCTCGAGCATGTGCTGGTGCCACATTTTTTTTCACCCGGGG-
685 AGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGC
* * * * *
46192 A--A----C----CATCGTCGGAGAACCT-ATCAGGCGGCATTGGAGTTTCGATGATTGGGAGGG
750 ACCATCGCCGGAGCATCGTCGGAGAACCTGA-CCGGCGGCATTGGGGTTCCGACGATTGGGGGGG
* *
46246 CCGGGGGGTGTCCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
814 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
46309 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCT
1 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * **
46374 ACCAGTAGCCATTAAAGTGTCT-AAATTGGGGACACTTTTTTCAAATGGTCACAAAATTCTAAAC
66 GCCAGTAGCCATTAAAGTGTCTGAAA-TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC
*
46438 ATTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
130 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* *
46503 GTTTGGGGCCAAAACT-C--CTGAAAAAATTTTTAAAAAAAACCCGAACCATAAAAAGTTTCAAA
195 GTTTGGGGCCAAAACTCCTTCTGAAAAAA-TTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAA
*
46565 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAAGAAGGCTTAAGGGACCAT
259 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAT
* * *
46630 TGTATGAATTTACAAGCCATAAAAATGGCATTGGAATAGCAGAAATATAAAGATGTGCCTAAACC
324 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACC
* * * *
46695 CACCTACCACCCTATCGACCCATGGCTTGCGCATCCTGCCTCTCTGGCTTG-CGTAGTGCCCGCC
389 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGC-CGACGTAGTGCCCGCC
* *
46759 CGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGA
453 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
*
46824 CCGGACCGAGGGTT
518 CCAGACCGAGGGTT
46838 ACGGGTGCAC
Statistics
Matches: 5931, Mismatches: 626, Indels: 351
0.86 0.09 0.05
Matches are distributed among these distances:
860 92 0.02
863 1 0.00
864 1 0.00
865 1 0.00
866 2 0.00
868 42 0.01
869 319 0.05
870 113 0.02
871 52 0.01
872 109 0.02
873 3 0.00
874 435 0.07
875 159 0.03
876 70 0.01
877 2 0.00
878 48 0.01
879 8 0.00
880 503 0.08
881 380 0.06
882 500 0.08
883 88 0.01
884 202 0.03
885 281 0.05
886 193 0.03
887 16 0.00
888 3 0.00
889 285 0.05
890 9 0.00
891 42 0.01
892 261 0.04
893 5 0.00
894 2 0.00
895 3 0.00
896 93 0.02
897 13 0.00
898 1 0.00
899 79 0.01
900 743 0.13
901 469 0.08
902 15 0.00
903 102 0.02
904 134 0.02
905 2 0.00
906 50 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (876 bp):
ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGC
CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACTGAGGGGGACCCGACCGATCCCCGACTTGC
GCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGA
CCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCT
Found at i:45212 original size:26 final size:26
Alignment explanation
Indices: 45160--45212 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
45150 GTTAACTTAG
* *
45160 GCATACGTAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATATAA
*
45186 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAATATAA
45212 G
1 G
45213 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATATAA
Found at i:46090 original size:26 final size:26
Alignment explanation
Indices: 46061--46113 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
46051 GTTGACTTAG
46061 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
46087 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
46113 G
1 G
46114 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:47444 original size:704 final size:704
Alignment explanation
Indices: 46087--47542 Score: 2324
Period size: 704 Copynumber: 2.1 Consensus size: 704
46077 CCCAGTCTAA
* *
46087 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGGTGCACATGCTGAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGGTGCACATGCTGAG
* * * *
46152 CTCGAGCATGTGCTGGTGCCACATTTTTTTTCACCCGGGGAACCATCGTCGGAGAACCTATCAGG
66 CCCGAGCATGTGCTGGTGCCACATTTTTTTTCACCCAGGGAACCATCGCCGAAGAACCTATCAGG
* ** *
46217 CGGCATTGGAGTTTCGATGATTGGGAGGGCCGGGGGGTGTCCGCACATGATGTGCAATGGGTGCT
131 CGGCATTGGAGTTTCGACGATTGGGAGGGCCGGGGGGTGTCCGCACAACATGTGCAACGGGTGCT
*
46282 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
196 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
46347 GACCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAATTGGGGACACTTT
261 GACCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAATTGGGGACACTTT
* *
46412 TTTCAAATGGTCACAAAATTCTAAACATTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
326 TTTCAAATGGTCACAAAATCCTAAACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
*
46477 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTGAAAAAATTTTTAAAAAAAA
391 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTGAAAAAATTTTTAAAAAAAA
46542 CCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
456 CCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
46607 CACAAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATAGCAG
521 CACAAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATAGCAG
46672 AAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGACCCATGGCTTGCGCATCCTGCCTC
586 AAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGACCCATGGCTTGCGCATCCTGCCTC
* *
46737 TCTGGCTTG-CGTAGTGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
651 TCTGGC-CGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * *
46791 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGGTGCACATGCTGAG
* ** * * *
46856 CCCGAGCATGTGCTGGTGTCGTATTTTTTTT-GCCCAGTGCACCATCGCCGAAGAACCTGATC-G
66 CCCGAGCATGTGCTGGTGCCACATTTTTTTTCACCCAGGGAACCATCGCCGAAGAACCT-ATCAG
* * * **
46919 GCGGCATTCGG-G-TTCAGGCGATTGGG-GGGGCGTGGGGGCTGTGCGCACAACATGTGTGACGG
130 GCGGCATT-GGAGTTTC-GACGATTGGGAGGGCCG-GGGGG-TGTCCGCACAACATGTGCAACGG
46981 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
191 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
** * * *
47046 TTAAAGTGCATTTGATATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAA-TGGGGA
256 TTAAAGACCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCT-AAATTGGGGA
**
47110 CACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
320 CACTTTTTTCAAATGGTCACAAAATCCTAAACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
47175 GCCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCTGAAAAAA-TT
385 G-CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACT-C--CTGAAAAAATTT
* *
47238 TTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
446 TTAAAAAAAACCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
47303 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
511 CATGAAACTTCACAAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
47368 GGCAA-GGCA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
576 GG-AATAGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGACCCATGGCTTGCG
47431 CATCCTG-CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
640 CATCCTGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
47495 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCTGGACTGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GGACTGAGGGTT
47543 GCGGTAGTAG
Statistics
Matches: 694, Mismatches: 45, Indels: 25
0.91 0.06 0.03
Matches are distributed among these distances:
702 8 0.01
703 45 0.06
704 418 0.60
705 78 0.11
706 134 0.19
707 11 0.02
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (704 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGGTGCACATGCTGAG
CCCGAGCATGTGCTGGTGCCACATTTTTTTTCACCCAGGGAACCATCGCCGAAGAACCTATCAGG
CGGCATTGGAGTTTCGACGATTGGGAGGGCCGGGGGGTGTCCGCACAACATGTGCAACGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GACCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAATTGGGGACACTTT
TTTCAAATGGTCACAAAATCCTAAACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTGAAAAAATTTTTAAAAAAAA
CCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACAAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATAGCAG
AAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGACCCATGGCTTGCGCATCCTGCCTC
TCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:47689 original size:26 final size:26
Alignment explanation
Indices: 47653--47705 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
47643 GTTGACTTAG
47653 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
47679 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
47705 G
1 G
47706 ATCGGCTGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:48568 original size:26 final size:26
Alignment explanation
Indices: 48532--48584 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
48522 GTTAACTTAG
48532 GCATAAGGAGTTCATTCC-CAGTCTAA
1 GCATAAGGAGTTCA-TCCTCAGTCTAA
*
48558 GCATACGGAGTTCATCCTCAGTCTAA
1 GCATAAGGAGTTCATCCTCAGTCTAA
48584 G
1 G
48585 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCTCAGTCTAA
Found at i:49113 original size:882 final size:879
Alignment explanation
Indices: 46791--49441 Score: 3964
Period size: 877 Copynumber: 3.0 Consensus size: 879
46781 GTTGGCTTAG
* * *
46791 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGGTGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCAGGTGCACATGCTGGG
* * * * * *
46856 CCCGAGCATGTGCTGGTGTCGTATTTTTTTTGCCCAGTGCACCATCGCCGAAGAACCTGATCGGC
66 CTCGGGCATGTGCTGGTGCCATATTTTTTTTGCCC-GGGCACCATCGCCG-AGAACCTGACCGGC
* ** * *
46921 GGCATTCGGGTTCAGGCGATTGGGGGGGCGTGGGGGCTGTGCGCACAACATGTGTGACGGGTGCT
129 GGCATT-GGGTTCCGGCGATT-GGGGGGCG-GGGGG-TGTGCGCACATGATGTGCGATGGGTGCT
46986 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
190 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
47051 GTGCATTTGATATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
255 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTT
47116 TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCCAA
319 TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATG-CCAA
*
47181 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCTGAAAAAATTTTAAAAAA
382 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAAAA
47246 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
446 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
47311 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGGC
511 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
47376 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA-TCCTG-C
576 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATTCC-GCC
*
47439 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
640 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGA
* * * *
47504 GTTCATTCCCAGTCTAAGATCAGACCTGGACTGAGGGTTGCGGTAGTAGGATCGGCAGCACGCTG
705 GTTCATTCCCAGTCTAAGATCGGACC-GGACTGAGGGTTGCGGCAGCAGGATC-GCAGCACACTG
* * * *
47569 AGGGGGACCCGACCGATCCCCGACTTGCGCATCCTG-CCCTCTGGCC-AGCTGAGCG-CCGCACG
768 AGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGCCGA-CTGAGCGCCCACACG
47631 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
832 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
47679 GCATATGGAGTTCATTCCCAGTCTAAGA-TCGGCTGGACCGA-GGTTG-TGGTGCACAT-CTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCAGGTGCACATGCTGGG
*
47740 CTCGGAGCATGTGCTGGTGCCATA-TTTTTTT-CCCGGGCCAATCATCAGAGCATCCGAGAACCT
66 CTCGG-GCATGTGCTGGTGCCATATTTTTTTTGCCCGGG-C-ACCATC---G---CCGAGAACCT
*
47803 -ACCGGC-GCA-TGGGTTCCGACGATT-GGGGG-GGGGGGTGTGCGCACATGATGTGCGATGGGT
122 GACCGGCGGCATTGGGTTCCGGCGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
47863 GCTGGTACTTGGCCCTTATAATGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
187 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
47927 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG-GACT
252 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGACACT
* *
47991 TTTTTCAAATGGTCACAAAATCCTGTACACATCGAGTTTTTAGCTGAATTGTTTTGTGCATGCAA
317 TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCA
*
48056 AGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAA
381 A-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
** * * *
48121 AAAGCCGAAACTGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTACCATGAA
445 AATCCCG-AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
48186 ACTTCACATGAAGGCTTATGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATG
509 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
** * * * * *
48251 AAAGAAATATGAAGATGTGCCTAAACCCACTTGCCACCTTATCAATCCATGGC-TGACGCATTTC
574 GCA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG-CGCATTCC
* * * * * *
48315 GCCTCTTTGGCCGACGTAGTGCCTGCCCGCCCGCCCGTTTGTTTCATCGATTGTCTTAGGCATAC
637 GCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATAC
* * *
48380 AGAGTTCATTCCCA-TCTAAGATTGGACCGGACT-ATGGGTTACGGCAGCAGGATCAGCAGCACA
702 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGA-GGGTTGCGGCAGCAGGATC-GCAGCACA
* * **
48443 CTGAGGGGGGCCCGGTCGATCCCCGGCTTATGCATCCTGCCCCTTTGGCCGACTGAGCGCCCACA
765 CTGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGCCGACTGAGCGCCCACA
* *
48508 CGCTCGTTTCGTGGGTTAACTTAGGCATAAGGAGTTCATTCCCAGTCTAA
830 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
48558 GCATACGGAGTTCA-TCCTCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGGTGCACATGCTGG
1 GCATATGGAGTTCATTCC-CAGTCTAAGATTAGACCGGACCGAGGGTTGCAGGTGCACATGCTGG
48622 GCTCGGGCATGTGCTGGTGCCATATTTTTTTTCGCCCGGGCACCATCGCCGAGAACCTGACCGGC
65 GCTCGGGCATGTGCTGGTGCCATATTTTTTTT-GCCCGGGCACCATCGCCGAGAACCTGACCGGC
48687 GGCATTGGGGTTCCGGCGATTGGGGGGCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
129 GGCATT-GGGTTCCGGCGATTGGGGGGCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
48752 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
192 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
48817 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGACACTTTTTT
257 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGACACTTTTTT
48882 CAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAAAAAAA
322 CAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAAAAAAA
48947 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAAAATCCCG
387 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCG
*
49011 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
452 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
49076 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCATAAAT
517 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA-AAAT
* *
49141 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
581 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATTCCGCCTCTCTG
* * ** * * *
49206 GTCGGCGTAGTGCCCGTGCGCCCGCCCGCTCATTTTGTCAATTGGCTTAGGCATACGGAGTTCAT
646 GCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCAT
* * * * * * *
49271 TCCCAGTCTAAGCTGGGATCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCGCA-TAAAGGGGG
711 TCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGATCG-CAGCACACT-GAGGGGG
* * * * *
49335 ACCCGATCGATTCCCGGCTCGCGCATCCTACCCCATTGGCCGGCTGAGCGCCCACACGCTCGTTT
774 ACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGCCGACTGAGCGCCCACACGCTCGTTT
*
49400 CGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
839 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
49441 G
1 G
49442 ATTAGACCAG
Statistics
Matches: 1588, Mismatches: 133, Indels: 89
0.88 0.07 0.05
Matches are distributed among these distances:
876 15 0.01
877 308 0.19
878 90 0.06
879 244 0.15
880 55 0.03
881 23 0.01
882 269 0.17
883 181 0.11
884 133 0.08
885 157 0.10
886 57 0.04
887 13 0.01
888 33 0.02
889 7 0.00
890 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (879 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCAGGTGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCATATTTTTTTTGCCCGGGCACCATCGCCGAGAACCTGACCGGCGG
CATTGGGTTCCGGCGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGACACTTTTTTCAAA
TGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAAAAAAATACA
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACC
GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATTCCGCCTCTCTGGCCGA
CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCA
GTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGATCGCAGCACACTGAGGGGGACCCGAT
CGATCCCCGGCTTGCGCATCCTGCCCCTTTGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:49512 original size:159 final size:159
Alignment explanation
Indices: 49251--49600 Score: 461
Period size: 159 Copynumber: 2.2 Consensus size: 159
49241 TGTCAATTGG
* * * * * *
49251 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTGGGATCAGACTGAGGGTTGTGGCAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGAGACCAGACCGAGGGTTGCGGCAACAGGAT
* * *
49316 CGACAGCGCATAAAGGGGGACCCGATCGATTCCCGGCTCGCGCATCCTACCCCAT-TGGCCGGCT
66 AGACAGCACATAAAGGGGGACCCGATCGATCCCCGGCTCGCGCATCCTACCCC-TCTGGCCGGCT
* *
49380 GAGCGCCCACACGCTCGTTTCGTGGGTTGA
130 GAGCACCCACACGCTCATTTCGTGGGTTGA
* *
49410 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCAACAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGAGACCAGACCGAGGGTTGCGGCAACAGGAT
** * * * *
49475 AGGTAGCACACT-AAGGGGGACCTGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCT
66 AGACAGCACA-TAAAGGGGGACCCGATCGATCCCCGGCTCGCGCATCCTACCCCTCTGGCCGGCT
* *
49539 GAGCACCCGCACGCTCATTTTGTGGGTTGA
130 GAGCACCCACACGCTCATTTCGTGGGTTGA
* *
49569 CTTAGGCATACGGAGCTCATTCCTAGTCTAAG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG
49601 TTCAGACAAC
Statistics
Matches: 165, Mismatches: 24, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
158 1 0.01
159 163 0.99
160 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.22
Consensus pattern (159 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGAGACCAGACCGAGGGTTGCGGCAACAGGAT
AGACAGCACATAAAGGGGGACCCGATCGATCCCCGGCTCGCGCATCCTACCCCTCTGGCCGGCTG
AGCACCCACACGCTCATTTCGTGGGTTGA
Found at i:52394 original size:862 final size:859
Alignment explanation
Indices: 51209--54449 Score: 4056
Period size: 863 Copynumber: 3.7 Consensus size: 859
51199 TTTCACCCGA
* *
51209 GGCATTGGGGTTTCGGTGATTGGGGGGGCGGGGGGTGTGCACACATGATGTGCGATGGGTGCGGG
1 GGCATTGGGGTTTCGGCGATTGGGGGGGCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGG
* * *
51274 TACTTGGCCCTTATATTAGCCTCCTATCCCTGATCAAACCTTGAGAACTCACACCTCCTTAAAGA
66 TACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
* * *
51339 GCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCGTCAAAGTGTCTAAAATA-GGACAGTTTTT
131 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATCAAAGTGTCTAAAATAGGGACACTTTTT
* * * * * *
51403 TCAAATGGTCAAAAAATCCTGTACATTTTGAGTTTTTAGCTGAATTTTTTTCTCCATGCCAACAA
196 TCAAATGGTCAAAAAATCCTCTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAA
* *
51468 AAATACAAGGATCACATCTACCAAGTTTGTGGCCAAAACAT-CTTCTGAAAAAGTTTTAAAAAAA
261 AAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAC-TCCTTCTGAAAAAATTTTAAAAAAA
* *
51532 TCCCGAACCGTAAAAATTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
325 TCCCGAACCGTAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
51597 CACATGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATTAAAATGGCTTTGGCA-TGGCA
390 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTGGCA
51661 -AAAGTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG-ATCCCGCC
455 GAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
* * * *
51724 TCTCTGGCCGACATAGTGCTCGCCTGCCTGCCTGCTCGTTTTGTCAGTTGGCTTAGGCATACGGA
519 TCTCTGGCCGACGTAGTGC-CGCC-GCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGA
* * *
51789 GTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTCTGGCATCAAGATCGGTAGCACGCTAA
582 GTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTC-GGCAGCAAGATCGGTAGCACGCTAA
* * *
51854 GGGGGACCCGACCGATCCCCGGCTTACGCATCTTGCCACTCTGGCCGACTGAGCGCCCGCACGCT
646 GGGGGACCCGACCGATCCTCGGCTTACGCATCTTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
*
51919 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGG
711 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG
*
51984 TTGCAGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTTTTCACTCGAGGCACCA
776 TTGCGGGTGCACATGCTGGGCTC-AGCATGTGCTGGTGCCACATTTTTTTTC-C-CG-GGCACCA
52049 TC-G-TCGGAGAACCTGACCAGC
837 TCAGCTCGGAGAACCTGACCAGC
*
52070 GACATTGGGGTTTCGGCGATTGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTG
1 GGCATTGGGGTTTCGGCGATTGGGGGGG-CGGGGGGTGTGCACACATGATGTGCGATGGGTGCTG
*
52135 GTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCACACCTCCTTAAAG
65 GTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
** *
52200 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTGTCAAAGTGTCTAAAATAGGGACAGTTTT
130 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATCAAAGTGTCTAAAATAGGGACACTTTT
* * *
52265 TTCAAATGGTCAAAAAATCCTCTACACTTCGAGTTTTTAGTTGAATTTTTTTATGCATGCCCATA
195 TTCAAATGGTCAAAAAATCCTCTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAA
* * * *
52330 AAAATACAAGGATCACGTCTACCAAGATTGGGGCCAAATCGCCTTCTGAAAAAATTTT-AAAAAA
260 AAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAA
* * * *
52394 TCCCGAATCGTAAAAATTTTCAATAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATAAAACT
325 TCCCGAACCGTAAAAA-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * * *
52459 TCACATGAAAGCTTAAGGGACCATTGTCTGAATTTACAACCCATAAAAATGGCATTGGCACTTGT
389 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTGGC
* * * *
52524 AGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGTATCCCGCC
454 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
*
52589 TCTCAGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGA
519 TCTCTGGCCGACGTAGTG-CCG-CCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGA
* * *
52654 GTTCATTCCAAGTCTAAGATCGGACCGGACCAAGGGTTGAGGCAGCAAGATCGGTAGCACGCT--
582 GTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTT-CGGCAGCAAGATCGGTAGCACGCTAA
* * * * *
52717 --GAGACCC-ATCCAATCCTCGGCTTGCACATCTTGCCCCTCTGGCCGGCTGAGCGCCCGTACGC
646 GGGGGACCCGA-CCGATCCTCGGCTTACGCATCTTGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
*
52779 TTGTTTTC-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
710 TCG-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG-------
* *
52843 CCAGTCTAAGATCGGATCAGACCGAGGGTTACGGGTGCACATGCTGGCCTCAGGCATGTGCTGGT
763 --A--C------C-G----GACCGAGGGTTGCGGGTGCACATGCTGGGCTCA-GCATGTGCTGGT
* **
52908 GCCGCATTTTTTTTCGCCCGGGCCACCATCGTCAGAGCATCGCCAGAGAACCTGACTGGC
812 GCCACATTTTTTTT--CCCGGG-CACCA---TC--AGC-TCG---GAGAACCTGACCAGC
* * * *
52968 GGTAATGGGGTTTCGGCGATTGGGTGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
1 GGCATTGGGGTTTCGGCGATTGGG-GGGGC-GGGGGGTGTGCACACATGATGTGCGATGGGTGCT
* * *
53033 GGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCCTTAA
64 GGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCACA-CCCCCTTAA
* * * * *
53098 AGAGCATTTGAGATTTTACAAGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
128 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATCAAAGTGTCTAAAATAGGGACACTT
* * * *
53163 TTTTCGAATGGTTACAAAATCCTGC-ACACTTCGAGTTTTTAGCTGAATTTTTTTTTTGCATGCC
193 TTTTCAAATGGTCAAAAAATCCT-CTACACTTCGAGTTTTTAGCTGAA-TTTTTTTATGCATGCC
* * * *
53227 AAAAAAAATACAAGGATCACTTCTACCAAGTTTGGGCCCAAAAATCCTTCTGAAAAAATTTAAAA
256 AAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT-TAA
*
53292 AAAAATCCCGAACCGTAAAACGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
320 AAAAATCCCGAACCGTAAAA-ATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
53357 AAACTTCACATCAAGGCTTAAGGGACCATTGTATAAATTTATAAGCCATAAAAATGGCATTGGCA
384 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** *
53422 CT-ATAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTTGCGCATC
449 CTGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
53486 CCGCCTCTCTAGCCGGCGTAGTTACCGCACGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
514 CCGCCTCTCTGGCCGACGTAG-TGCCGC-CGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCAT
* * ** * * * *
53551 ACGGAGTTCATTCCCAATCTAAGATTGGACC-AGACCAACAGTTGCAGCAGCAGGATTGGCAGCA
577 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCAAGGGTT-CGGCAGCAAGATCGGTAGCA
* ** * ** *
53615 CG-TAGAGGGGGACCCGGCCGATCCTCGATTTACGCATCCTGCCCCTCTGGCCGGCTGAGTACCA
640 CGCTA-AGGGGGACCCGACCGATCCTCGGCTTACGCATCTTGCCCCTCTGGCCGGCTGAGCGCCC
* * * * * *
53679 ACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCCAAGATAAGATCAGA
704 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* *
53744 CCGAGTGTTGCGGGTGCACATGCTGGGCTCAAGCATGTGCTGGTGCCACTTTTTTTTTGCCCGGG
769 CCGAGGGTTGCGGGTGCACATGCTGGGCTC-AGCATGTGCTGGTGCCACATTTTTTTT-CCC-GG
*
53809 GCACCATCACCGGAGCATCTTCGGACAACCTGACCAGC
831 GCACCAT---C--AG---C-TCGGAGAACCTGACCAGC
* * *
53847 GGCATTGGGGTTCCGGCGATTGGGGGGGCTGGGGGTGTGCGCACAT-ATGTGCGATGGGTGCTGG
1 GGCATTGGGGTTTCGGCGATTGGGGGGGCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGG
* *
53911 TACTTGGCCCTTATATTGGCC-CTCTATCCCTTATCAAA-CTAGGAGAACTCACACCCCCTTAAA
66 TACTTGGCCCTTATATTGGCCTC-CTATCCCTCATCAAACCT-TGAGAACTCACACCCCCTTAAA
* * * * * *
53974 GAGCATTTGAGATTTTACTGGTTTGCTGCCAATAGCCATTAAAGTGTTTGAAATGGGGACACCTT
129 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATCAAAGTGTCTAAAATAGGGACA-CTT
* * * * * * *
54039 TTTT-AAATGGTCACAAAATCCTATACACTTCGAGCTTTTAGCTGAAATGTTTTGTGCGTGCCAA
193 TTTTCAAATGGTCAAAAAATCCTCTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA
54103 AAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
258 AAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
* * * *
54168 AATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGCCGTCTTGCCATGAAA
323 AATCCCGAACCGTAAAAA-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
54233 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TG
387 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTG
* * * *
54297 GCAGAAATATGAAGATGTGCCAAAACGCACCTACCACCCTATCGATTCACGGCTTGCGCATCCTG
452 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * ** * * ** *
54362 CCCCTCTGGTCGA--T--TG--AACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
517 CCTCTCTGGCCGACGTAGTGCCGCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGA
*
54421 GTTTATTCCCAGTCTAAGATCGGACCGAA
582 GTTCATTCCCAGTCTAAGATCGGACCGAA
54450 GTGAAGGTTG
Statistics
Matches: 2083, Mismatches: 211, Indels: 168
0.85 0.09 0.07
Matches are distributed among these distances:
860 1 0.00
861 119 0.06
862 177 0.08
863 217 0.10
864 51 0.02
865 185 0.09
866 4 0.00
868 1 0.00
871 1 0.00
872 1 0.00
873 190 0.09
874 71 0.03
875 106 0.05
876 72 0.03
877 16 0.01
878 4 0.00
879 46 0.02
880 56 0.03
881 1 0.00
882 5 0.00
883 1 0.00
885 1 0.00
886 3 0.00
887 61 0.03
888 1 0.00
889 1 0.00
890 2 0.00
893 2 0.00
895 3 0.00
898 35 0.02
899 88 0.04
900 106 0.05
901 71 0.03
902 168 0.08
903 122 0.06
905 6 0.00
906 88 0.04
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (859 bp):
GGCATTGGGGTTTCGGCGATTGGGGGGGCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATCAAAGTGTCTAAAATAGGGACACTTTTT
TCAAATGGTCAAAAAATCCTCTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAA
AAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAT
CCCGAACCGTAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTGGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
TCTGGCCGACGTAGTGCCGCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTCGGCAGCAAGATCGGTAGCACGCTAAGGGGG
ACCCGACCGATCCTCGGCTTACGCATCTTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCG
GGTGCACATGCTGGGCTCAGCATGTGCTGGTGCCACATTTTTTTTCCCGGGCACCATCAGCTCGG
AGAACCTGACCAGC
Found at i:52829 original size:26 final size:26
Alignment explanation
Indices: 52800--52852 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
52790 GTTGACTTAG
52800 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
52826 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
52852 G
1 G
52853 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:55477 original size:60 final size:60
Alignment explanation
Indices: 55196--55718 Score: 634
Period size: 60 Copynumber: 8.8 Consensus size: 60
55186 TTCTTGCGCT
* * * * *
55196 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAA-A-ATTCTTTTGAAACTTTA-ATTTA
1 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGAAATTTTATTTTTA
* * ** * *
55253 GAGGAAGATTGATACTTTCAACTTTTCCTCAAAAAT-TGATTTTTTAAAAATTTATTTTTA
1 -AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGAAATTTTATTTTTA
* *
55313 AGGCAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTCTTTTTGGAAATTTTGATTTTCA
1 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTT-TTTTT-GAAATTTT-ATTTTTA
* **
55376 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAA-CCTTTTTTTTGAAATTTTATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGAAATTTTATTTTTA
* * * * *
55435 AGGAATATTAATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTAGAAACTTTGATTTATA
1 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGAAA-TTTTATTTTTA
* * * ***
55495 ATGAAGATTGATACTTTCAACTTTTCCTCAAAAA-CCCTTTTTTTGAAATTTTATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGAAATTTTATTTTTA
*
55554 AGGAAAATTGATACTTTCAACTTTT-CCCAAAAA-ATTTTTCTTTTGGAAACTTTATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTT-TTTT-GAAATTTTATTTTTA
*
55614 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTGGAAA-TTTATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTT-GAAATTTTATTTTTA
*
55674 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATATTTTTTT
1 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTT
55719 ATTTTTATTT
Statistics
Matches: 403, Mismatches: 48, Indels: 26
0.84 0.10 0.05
Matches are distributed among these distances:
58 41 0.10
59 128 0.32
60 155 0.38
61 27 0.07
62 14 0.03
63 38 0.09
ACGTcount: A:0.34, C:0.14, G:0.08, T:0.45
Consensus pattern (60 bp):
AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGAAATTTTATTTTTA
Found at i:55530 original size:119 final size:119
Alignment explanation
Indices: 55196--55717 Score: 707
Period size: 119 Copynumber: 4.4 Consensus size: 119
55186 TTCTTGCGCT
* * * * *
55196 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAAAATTCTTTT-GAAACTTTAATTTA-GAGGAA
1 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACTTTGATTTATAAGGAA
* * *
55259 GATTGATACTTTCAACTTTTCCTCAAAAA--TTGATTTTTTAAAAATTTATTTTTA
66 AATTGATACTTTCAACTTTTCCTCAAAAACCTT--TTTTTTGAAATTTTATTTTTA
* *
55313 AGGCAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTCTTTTTGGAAATTTTGATTT-TCAA
1 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATA--TT-TTTTTGGAAACTTTGATTTAT-AA
55377 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTGAAATTTTATTTTTA
62 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTGAAATTTTATTTTTA
* * * *
55435 AGGAATATTAATACTTTCAACTTTTCCCCAAAAATATTTTTTTAGAAACTTTGATTTATAATGAA
1 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACTTTGATTTATAAGGAA
* *
55500 GATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTGAAATTTTATTTTTA
66 AATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTGAAATTTTATTTTTA
* * *
55554 AGGAAAATTGATACTTTCAACTTTTCCCAAAAAATTTTTCTTTTGGAAACTTT-ATTTTTAAGGA
1 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTT-TTTTGGAAACTTTGATTTATAAGGA
* **
55618 AAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTGGAAA-TTTATTTTTA
65 AAATTGATACTTTCAACTTTTCCTCAAAAA-CCTTTTTTTT-GAAATTTTATTTTTA
55674 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATATTTTTT
1 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATAT-TTTTTT
55718 TATTTTTATT
Statistics
Matches: 360, Mismatches: 32, Indels: 23
0.87 0.08 0.06
Matches are distributed among these distances:
117 33 0.09
119 148 0.41
120 75 0.21
121 17 0.05
122 85 0.24
124 2 0.01
ACGTcount: A:0.34, C:0.14, G:0.08, T:0.45
Consensus pattern (119 bp):
AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACTTTGATTTATAAGGAA
AATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTGAAATTTTATTTTTA
Found at i:55741 original size:5 final size:5
Alignment explanation
Indices: 55733--55837 Score: 80
Period size: 5 Copynumber: 21.6 Consensus size: 5
55723 TTATTTAAAG
*
55733 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT -AAAAT AAAAT
* * * *
55779 AAAAT AAAGA- AAAGT AAAAC AAAA- ATAA- AAAAT AAAAA AAAAT -AAA-
1 AAAAT AAA-AT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
55825 AAAAT AAAAT AAA
1 AAAAT AAAAT AAA
55838 GGTAAAAAGG
Statistics
Matches: 81, Mismatches: 10, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
3 3 0.04
4 12 0.15
5 54 0.67
6 8 0.10
7 4 0.05
ACGTcount: A:0.80, C:0.02, G:0.04, T:0.14
Consensus pattern (5 bp):
AAAAT
Found at i:55758 original size:10 final size:9
Alignment explanation
Indices: 55728--55833 Score: 67
Period size: 9 Copynumber: 11.6 Consensus size: 9
55718 TATTTTTATT
*
55728 TAAAGAAAA
1 TAAAAAAAA
*
55737 T-AAAATAA
1 TAAAAAAAA
55745 TAAAACAAAA
1 TAAAA-AAAA
**
55755 TAAAAGTGAA
1 TAAAA-AAAA
*
55765 -AATAAAAA
1 TAAAAAAAA
55773 TAAAATAAAA
1 TAAAA-AAAA
*
55783 TAAAGAAAAG
1 TAAA-AAAAA
55793 TAAAACAAAA
1 TAAAA-AAAA
*
55803 -ATAAAAAA
1 TAAAAAAAA
55811 TAAAAAAAA
1 TAAAAAAAA
55820 -ATAAAAAAA
1 TA-AAAAAAA
55829 TAAAA
1 TAAAA
55834 TAAAGGTAAA
Statistics
Matches: 74, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
8 13 0.18
9 31 0.42
10 29 0.39
11 1 0.01
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.14
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:55768 original size:12 final size:11
Alignment explanation
Indices: 55733--55837 Score: 81
Period size: 13 Copynumber: 9.2 Consensus size: 11
55723 TTATTTAAAG
55733 AAAATAAAATAA
1 AAAATAAAAT-A
*
55745 TAAAACAAAATA
1 -AAAATAAAATA
*
55757 AAAGTGAAAATA
1 AAAAT-AAAATA
55769 AAAATAAAAT-
1 AAAATAAAATA
*
55779 AAAAT-AAAGA
1 AAAATAAAATA
* *
55789 AAAGTAAAACA
1 AAAATAAAATA
55800 AAAATAAAAAATA
1 AAAAT--AAAATA
55813 AAAA-AAAATAAA
1 AAAATAAAAT--A
55825 AAAATAAAATA
1 AAAATAAAATA
55836 AA
1 AA
55838 GGTAAAAAGG
Statistics
Matches: 75, Mismatches: 9, Indels: 18
0.74 0.09 0.18
Matches are distributed among these distances:
9 3 0.04
10 14 0.19
11 19 0.25
12 16 0.21
13 23 0.31
ACGTcount: A:0.80, C:0.02, G:0.04, T:0.14
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:55797 original size:38 final size:36
Alignment explanation
Indices: 55733--55833 Score: 116
Period size: 38 Copynumber: 2.8 Consensus size: 36
55723 TTATTTAAAG
* **
55733 AAAATAAAATAATAA-AACAAAATAAAAGTGAAAAT-A
1 AAAATAAAATAA-AATAAAAAAATAAAA-CAAAAATAA
55769 AAAATAAAATAAAATAAAGAAAAGTAAAACAAAAATAA
1 AAAATAAAATAAAATAAA-AAAA-TAAAACAAAAATAA
*
55807 AAAATAAAAAAAAATAAAAAAATAAAA
1 AAAATAAAATAAAATAAAAAAATAAAA
55834 TAAAGGTAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 8
0.83 0.06 0.12
Matches are distributed among these distances:
35 2 0.04
36 19 0.33
37 13 0.23
38 23 0.40
ACGTcount: A:0.80, C:0.02, G:0.04, T:0.14
Consensus pattern (36 bp):
AAAATAAAATAAAATAAAAAAATAAAACAAAAATAA
Found at i:55814 original size:56 final size:54
Alignment explanation
Indices: 55728--55837 Score: 134
Period size: 56 Copynumber: 2.0 Consensus size: 54
55718 TATTTTTATT
* * *
55728 TAAAGAAAATAAAATAATAAAACAAAATAAAAGTGAAAAT-AAAAATAAAATAAAA
1 TAAAGAAAATAAAACAATAAAAAAAAATAAAA--AAAAATAAAAAATAAAATAAAA
55783 TAAAGAAAAGTAAAACAA-AAATAAAAAATAAAAAAAAATAAAAAAATAAAATAAA
1 TAAAGAAAA-TAAAACAATAAA-AAAAAATAAAAAAAAAT-AAAAAATAAAATAAA
55838 GGTAAAAAGG
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
54 5 0.10
55 12 0.25
56 31 0.65
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.15
Consensus pattern (54 bp):
TAAAGAAAATAAAACAATAAAAAAAAATAAAAAAAAATAAAAAATAAAATAAAA
Found at i:55845 original size:18 final size:18
Alignment explanation
Indices: 55733--55837 Score: 101
Period size: 18 Copynumber: 5.7 Consensus size: 18
55723 TTATTTAAAG
*
55733 AAAATAAAATAATAAA-AC
1 AAAATAAAATAA-AAATAA
*
55751 AAAATAAAAGTGAAAAT-A
1 AAAATAAAA-TAAAAATAA
55769 AAAATAAAAT-AAAATAAA
1 AAAATAAAATAAAAAT-AA
*
55787 GAAAAGTAAAACAAAAATAA
1 -AAAA-TAAAATAAAAATAA
55807 AAAATAAAA-AAAAATAAA
1 AAAATAAAATAAAAAT-AA
55825 AAAATAAAATAAA
1 AAAATAAAATAAA
55838 GGTAAAAAGG
Statistics
Matches: 75, Mismatches: 3, Indels: 17
0.79 0.03 0.18
Matches are distributed among these distances:
16 5 0.07
17 7 0.09
18 38 0.51
19 13 0.17
20 7 0.09
21 5 0.07
ACGTcount: A:0.80, C:0.02, G:0.04, T:0.14
Consensus pattern (18 bp):
AAAATAAAATAAAAATAA
Found at i:56656 original size:28 final size:31
Alignment explanation
Indices: 56592--56649 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
56582 CATAGCCCCA
56592 AAAAAAGAAAAAAAAATAATAATCAGATAAAC
1 AAAAAAGAAAAAAAAAT-ATAATCAGATAAAC
*
56624 GAAAAAG-AAAAAAAAT-TAA-CAGATAA
1 AAAAAAGAAAAAAAAATATAATCAGATAA
56650 TTAAAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 7 0.28
29 3 0.12
31 9 0.36
32 6 0.24
ACGTcount: A:0.74, C:0.05, G:0.09, T:0.12
Consensus pattern (31 bp):
AAAAAAGAAAAAAAAATATAATCAGATAAAC
Found at i:56703 original size:4 final size:4
Alignment explanation
Indices: 56690--56785 Score: 58
Period size: 4 Copynumber: 24.0 Consensus size: 4
56680 TATTACAAGG
* *
56690 TAAA -AAA TAAA TAAA TAAA TAAA T-TA TAACA T-AA T-AA TAAA TATA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAA-A TAAA TAAA TAAA TAAA
* * * *
56735 TAAC TATA TAAA TAAAA TACATA TAAA T-AT TAACA AAAA TAAA TAAA
1 TAAA TAAA TAAA T-AAA TA-A-A TAAA TAAA TAA-A TAAA TAAA TAAA
56782 TAAA
1 TAAA
56786 GATATATATA
Statistics
Matches: 71, Mismatches: 12, Indels: 18
0.70 0.12 0.18
Matches are distributed among these distances:
3 12 0.17
4 46 0.65
5 10 0.14
6 3 0.04
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (4 bp):
TAAA
Found at i:57051 original size:18 final size:17
Alignment explanation
Indices: 57028--57066 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
57018 AACATTTTCA
*
57028 TTTTTTTTAT-TTTTTG
1 TTTTTTTTTTGTTTTTG
57044 TGTTTTTTTTTGTTTTTG
1 T-TTTTTTTTTGTTTTTG
57062 TTTTT
1 TTTTT
57067 GACTAAAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 12 0.60
18 7 0.35
ACGTcount: A:0.03, C:0.00, G:0.10, T:0.87
Consensus pattern (17 bp):
TTTTTTTTTTGTTTTTG
Found at i:57174 original size:41 final size:42
Alignment explanation
Indices: 57074--57243 Score: 249
Period size: 41 Copynumber: 4.1 Consensus size: 42
57064 TTTGACTAAA
* * *
57074 GCTCCTCTAAATAGAGGCTCAACGACTTTGAGAAACA-TAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAA-AGTAAATT
* *
57117 GCTCCTTTAAATAGAGGCACCACGAC-TTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
57158 GCTCCTCTAAACAGAGGCACCACGAC-TTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
57199 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
57240 GCTC
1 GCTC
57244 ACCACGACTT
Statistics
Matches: 120, Mismatches: 5, Indels: 6
0.92 0.04 0.05
Matches are distributed among these distances:
40 1 0.01
41 89 0.74
42 7 0.06
43 23 0.19
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
Found at i:57246 original size:27 final size:27
Alignment explanation
Indices: 57216--57270 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
57206 TAAACAGAGG
57216 CACCACGACTTTGGAAAGTAAATTGCT
1 CACCACGACTTTGGAAAGTAAATTGCT
*
57243 CACCACGACTTTGGAAATTAAATTGCT
1 CACCACGACTTTGGAAAGTAAATTGCT
57270 C
1 C
57271 CTCTAAACAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (27 bp):
CACCACGACTTTGGAAAGTAAATTGCT
Found at i:57265 original size:68 final size:68
Alignment explanation
Indices: 57175--57379 Score: 367
Period size: 68 Copynumber: 3.0 Consensus size: 68
57165 TAAACAGAGG
*
57175 CACCACGAC-TTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAAT
1 CACCACGACTTTGG-AAATTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAAT
57239 TGCT
65 TGCT
*
57243 CACCACGACTTTGGAAATTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
1 CACCACGACTTTGGAAATTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
57308 GCT
66 GCT
*
57311 CACCATGACTTTGGAAATTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 CACCACGACTTTGGAAATTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
57376 GCT
66 GCT
57379 C
1 C
57380 CTCTAAATAG
Statistics
Matches: 132, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
68 128 0.97
69 4 0.03
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (68 bp):
CACCACGACTTTGGAAATTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
GCT
Found at i:57314 original size:27 final size:27
Alignment explanation
Indices: 57284--57338 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
57274 TAAACAGAGG
57284 CACCACGACTTTGGAAAATAAATTGCT
1 CACCACGACTTTGGAAAATAAATTGCT
* *
57311 CACCATGACTTTGGAAATTAAATTGCT
1 CACCACGACTTTGGAAAATAAATTGCT
57338 C
1 C
57339 CTCTAAACAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.29
Consensus pattern (27 bp):
CACCACGACTTTGGAAAATAAATTGCT
Found at i:57420 original size:42 final size:41
Alignment explanation
Indices: 57311--57420 Score: 184
Period size: 41 Copynumber: 2.7 Consensus size: 41
57301 ATAAATTGCT
* *
57311 CACCATGACTTTGGAAATTAAATTGCTCCTCTAAACAGAGG
1 CACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGG
*
57352 CACCACGACTTTGGAAAGTAAATTGCTCCTCTAAATAGAGG
1 CACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGG
57393 CACCACGACTTTTGGAAAGTAAATTGCT
1 CACCACGAC-TTTGGAAAGTAAATTGCT
57421 TGTGTTTGAA
Statistics
Matches: 65, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
41 47 0.72
42 18 0.28
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (41 bp):
CACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGG
Found at i:58425 original size:24 final size:24
Alignment explanation
Indices: 58396--58476 Score: 80
Period size: 24 Copynumber: 3.4 Consensus size: 24
58386 TGAGTCCTCC
58396 TTTTTCATTCACTTT-TTTTTTC-TT
1 TTTTTCATT--CTTTATTTTTTCATT
*
58420 TTTTTCATTTTTTCATTTTTTCATT
1 TTTTTCATTCTTT-ATTTTTTCATT
*
58445 TTTTTCATT-TTT-TTTTCATCATT
1 TTTTTCATTCTTTATTTT-TTCATT
58468 TTTTTCATT
1 TTTTTCATT
58477 TTTTCATTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
22 7 0.14
23 14 0.27
24 19 0.37
25 11 0.22
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.75
Consensus pattern (24 bp):
TTTTTCATTCTTTATTTTTTCATT
Found at i:58480 original size:8 final size:8
Alignment explanation
Indices: 58411--58489 Score: 90
Period size: 8 Copynumber: 9.8 Consensus size: 8
58401 CATTCACTTT
*
58411 TTTTTTCT
1 TTTTTTCA
58419 TTTTTTCA
1 TTTTTTCA
58427 TTTTTTCA
1 TTTTTTCA
58435 TTTTTTCA
1 TTTTTTCA
58443 TTTTTTTCA
1 -TTTTTTCA
58452 TTTTTT--
1 TTTTTTCA
**
58458 TTTCATCA
1 TTTTTTCA
58466 TTTTTTTCA
1 -TTTTTTCA
58475 TTTTTTCA
1 TTTTTTCA
58483 TTATTTT
1 TT-TTTT
58490 TAAGCATAGT
Statistics
Matches: 61, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
6 4 0.07
8 39 0.64
9 18 0.30
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTTTCA
Found at i:68208 original size:59 final size:58
Alignment explanation
Indices: 68078--68357 Score: 372
Period size: 59 Copynumber: 4.7 Consensus size: 58
68068 TCTTGCACAG
* *
68078 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAA-TATTCTTTTGAAACTTTAATTTAAA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATTATT-TTTTGAAACTTTATTTTTAA
* *
68136 GGAAGATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATT-ATTTTTTGAAACTTTATTTTTAA
*
68195 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCTT-TTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA--TTATTTTTTGAAACTTTATTTTTAA
68254 GGAAAATTGATACTTTCAACTTTT-CTCCAAAAATATATATTTTTTTGGAAACTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCT-C-AAAA-AT-TA-TTTTTT-GAAACTTTATTTTTAA
*
68317 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-TATTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTATTTTTT
68358 TTATTTTTAT
Statistics
Matches: 201, Mismatches: 8, Indels: 26
0.86 0.03 0.11
Matches are distributed among these distances:
58 38 0.19
59 100 0.50
60 8 0.04
61 4 0.02
62 10 0.05
63 40 0.20
64 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.45
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTATTTTTTGAAACTTTATTTTTAA
Found at i:68382 original size:5 final size:5
Alignment explanation
Indices: 68374--68481 Score: 97
Period size: 5 Copynumber: 22.6 Consensus size: 5
68364 TTATTTAAAG
*
68374 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAA- AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAAAT AAAAT
* * *
68423 AAAGA- AAAGT AAAAC AAAA- ATAA- AAAAT AAAAT AAAAT AAAAT -AAA-
1 AAA-AT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
68469 AAAAT AAAAT AAA
1 AAAAT AAAAT AAA
68482 GGTAAAAAGG
Statistics
Matches: 86, Mismatches: 7, Indels: 20
0.76 0.06 0.18
Matches are distributed among these distances:
3 3 0.03
4 16 0.19
5 60 0.70
6 3 0.03
7 4 0.05
ACGTcount: A:0.80, C:0.02, G:0.04, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:68408 original size:30 final size:28
Alignment explanation
Indices: 68370--68477 Score: 114
Period size: 28 Copynumber: 3.8 Consensus size: 28
68360 ATTTTTATTT
*
68370 AAAG-AAAATAAAATAATAAAACAAAATA
1 AAAGTAAAATAAAAAAATAAAA-AAAATA
* *
68398 AAAGTGAAAATAAAAAAAATAAAATAAAGA
1 AAAGT-AAAAT-AAAAAAATAAAAAAAATA
*
68428 AAAGTAAAACAAAAATAA-AAAATAAAATA
1 AAAGTAAAATAAAAA-AATAAAA-AAAATA
68457 AAA-TAAAATAAAAAAATAAAA
1 AAAGTAAAATAAAAAAATAAAA
68478 TAAAGGTAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
27 2 0.03
28 27 0.40
29 13 0.19
30 14 0.21
31 11 0.16
ACGTcount: A:0.80, C:0.02, G:0.05, T:0.14
Consensus pattern (28 bp):
AAAGTAAAATAAAAAAATAAAAAAAATA
Found at i:68489 original size:18 final size:18
Alignment explanation
Indices: 68374--68481 Score: 103
Period size: 18 Copynumber: 5.7 Consensus size: 18
68364 TTATTTAAAG
* *
68374 AAAATAAAATAATAAAAC
1 AAAATAAAATAAAAAAAT
*
68392 AAAATAAAAGTGAAAATAAAA
1 AAAATAAAA-T-AAAA-AAAT
68413 AAAATAAAATAAAGAAAAGT
1 AAAATAAAATAAA-AAAA-T
*
68433 AAAACAAAA-ATAAAAAAT
1 AAAATAAAATA-AAAAAAT
68451 AAAATAAAATAAAATAAA-
1 AAAATAAAATAAAA-AAAT
68469 AAAATAAAATAAA
1 AAAATAAAATAAA
68482 GGTAAAAAGG
Statistics
Matches: 77, Mismatches: 5, Indels: 16
0.79 0.05 0.16
Matches are distributed among these distances:
18 34 0.44
19 16 0.21
20 15 0.19
21 12 0.16
ACGTcount: A:0.80, C:0.02, G:0.04, T:0.15
Consensus pattern (18 bp):
AAAATAAAATAAAAAAAT
Found at i:69414 original size:28 final size:28
Alignment explanation
Indices: 69364--69417 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
69354 CCCCAAAAAA
69364 GAAAAAAAAAAATAATAATCAGATAAAC
1 GAAAAAAAAAAATAATAATCAGATAAAC
69392 GAAAAATAAAAAA-AATTAA-CAGATAA
1 GAAAAA-AAAAAATAA-TAATCAGATAA
69418 TTAAAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
28 15 0.62
29 9 0.38
ACGTcount: A:0.72, C:0.06, G:0.07, T:0.15
Consensus pattern (28 bp):
GAAAAAAAAAAATAATAATCAGATAAAC
Found at i:69446 original size:43 final size:40
Alignment explanation
Indices: 69399--69479 Score: 101
Period size: 43 Copynumber: 1.9 Consensus size: 40
69389 AACGAAAAAT
*
69399 AAAAAAAATTA-ACAGATAATTAAAAATAAAATAAGATAAATCC
1 AAAAAAAATTACA-AGATAA--AAAAATAAAA-AAAATAAATCC
*
69442 AAAAAATATTACAAGATAAAAAAATAAAAAAAATAAAT
1 AAAAAAAATTACAAGATAAAAAAATAAAAAAAATAAAT
69480 TATAATATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
40 8 0.23
41 10 0.29
43 16 0.46
44 1 0.03
ACGTcount: A:0.72, C:0.05, G:0.04, T:0.20
Consensus pattern (40 bp):
AAAAAAAATTACAAGATAAAAAAATAAAAAAAATAAATCC
Found at i:70319 original size:25 final size:24
Alignment explanation
Indices: 70290--70336 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
70280 GATGACTTAG
*
70290 GCATATGGAGTTCATTCCCAGTCAA
1 GCATATAGAGTTCATT-CCAGTCAA
70315 GCATATAGAGTTCATTCCAGTC
1 GCATATAGAGTTCATTCCAGTC
70337 TAAGATCGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (24 bp):
GCATATAGAGTTCATTCCAGTCAA
Found at i:71687 original size:905 final size:878
Alignment explanation
Indices: 69715--72551 Score: 2923
Period size: 901 Copynumber: 3.1 Consensus size: 878
69705 GGCGTCTACA
* * *
69715 GTAGCCATTAAAGTGTCTAAAATGGGGACAC-GTTTTTCAAAATGGTCACAAAATCCTGTACACT
1 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTCAAAATGGTCACAAAATCCTATACACT
* ** *
69779 TCGAGTTTTTAGCTGAATTTTTTTGCGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTT
66 T-GAGTTTTTAGCTGAATTTTTTTGTGCATTACAA-AAAAATACAAGGATCACGTCTACCAAGTT
* * *
69844 TGGGGCCAAAACTCCTTC-TGAAAAAATTCTAAAAAAATC-CTGAACTGTACAAAGTTTCAAAAA
129 TGGGACCAAAACTCCTTCATGAAAAAATT-TAAAAAAATCAC-GAACCGTAAAAAGTTTCAAAAA
* * **
69907 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
192 TCATGAAAAATAGAAAACAAATCGTCTTGCTGTGAAACTTCACATGAAGGCTTAAGGGACCATTG
** * *
69972 TATGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAAAAATATGAAGATATGCCTAAACCCA
257 TATGAATTTACAAGCCATAAAAATGGCATTGGCAGGGCAAAAAAATGAAGATTTGCCTAAACCCA
* * * * * * *
70037 CCTACCACCCTATCGATCCACGGCTTGCGCA-TCCTGCCTCTCTGGCCGGCGTAGTGCCCGCCCG
322 CCAACCACCCTATCGATCCACGACTTACACATTCC-ACCTCTCTAGCCGGCGTAGTGCCCGTCCG
* * * *
70101 CCCGTCCGCTT-GTTTCATCGGCTGGCTTAGGC-ATACGGAGTTCATTCCCAGTCTAAGATC-AG
386 -CCGCCCG-TTCGTTTCGTCGGTTGGCTTA-GCAATACAGAGTTCATTCCCAGTCTAAGATCGA-
** * * * * * *
70163 AC-CAGACCGATGGTTACGGTAGCAGGATTGGAAAG-ATG-CTG-GGGGAGACCTGGCCAATCCC
447 ACTCA-AATGAGGGTTGCGGCAGCAGGA---G-AAGCATGACTGAGGGG-GACCCGGCCGATCAC
* * * * * * * *
70224 CGGCTTGCTCGTCCTGCCCCTCTGGCAGGCTGAGCGCCCACACGCTCGTTTCATGGGATGACTTA
506 CGACTTGCGCATCCTGCCCCTCTGGCCGGCT-AGGGCCCCCACGCTCGTTTCATAGGTTGACTTA
* * *
70289 GGCATATGGAGTTCATTCCCAGTC-AAGCATATAGAGTTCATTCCAGTCTAAGATCGGATCGGAC
570 GGCATACGGAGTTCATTCCCAGTCTAAGCATA-CG-G-----T---G--TAAGATTGGATCGGA-
* * * * ** *
70353 CAAGGGTTACGGGTGCATATGCTGGGCTAGGGCATGTGCTGGTGCCATATTTTTTTTTGCCCGAG
622 C-AGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA-TTTTTTTTGCCCGGG
* * *
70418 TCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGG
685 CCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGG-AATT-GGGGG
* * *
70483 GCC-AGGGGGTGTGCGCACATGATGTGCAATGGGTTGCTGGTACTTGGCCCTTATATTGGCCCCT
748 GCCGAGGGGGTGTGCGCACATGATGTGCGATGGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
70547 TATCCCTCATCAAACCTCGAGAACTCACACCCCATTAAAGCAGCATTGGAGATTTACAGGTTGCT
813 TATCCCTCATCAAACCTCGAGAACTCACACCCC-TTAAAG-AGCATTTGAGATTTTCAGGTTGCT
70612 GCC
876 GCC
*
70615 AGTAGCCATTAAAGTGTCTG-AAT-GGG-CACTTTTTTCCAAAATGGTCACAAAATCCTATACAC
1 -GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTCAAAATGGTCACAAAATCCTATACAC
* * *
70677 TTTGAGTTTTTAGTTGAATTGTTTTGTGCAATGCCCACAAAAAAATACAAGGA-CACGTCCTACC
65 -TTGAGTTTTTAGCTGAATTTTTTTGTGC-AT---TACAAAAAAATACAAGGATCACGT-CTACC
* * *
70741 AAG-TTGGGACCAAAACTCCTTCCTGAAAAAATTTAAAAAAATCATGAAACCGTAAAAGGTTTCA
124 AAGTTTGGGACCAAAACTCCTTCATGAAAAAATTTAAAAAAATCACG-AACCGTAAAAAGTTTCA
* * *
70805 AAAATCATGAAAAATAGAAAACCAGTTGTTCTTGCATG-GAAACTTCACATGAAGGCTTAAAGGG
188 AAAATCATGAAAAATAGAAAACAAATCG-TCTTGC-TGTGAAACTTCACATGAAGGCTT-AAGGG
* *
70869 ACCATCTGTATTGAATTTACAAGGCCATAAAAATGTCATTGGGTTAGGGCAAAAAAATGAAGCAT
250 ACCAT-TGTA-TGAATTTACAA-GCCATAAAAATGGCATT-GG-CAGGGCAAAAAAATGAAG-AT
* * *
70934 GTTGCCTAAACCCACCTACCACCCTATCGATCCCACGGCTTACACA-TCCGA-CTC-CTGGCCGG
309 -TTGCCTAAACCCACCAACCACCCTATCGAT-CCACGACTTACACATTCC-ACCTCTCTAGCCGG
70996 CGTAGTTGCCCG-CC-CCGCCCGCTATCGTTGTCGTCGGTTGGCCCTTAGGGTCAATAC-GAAGT
371 CGTAG-TGCCCGTCCGCCGCCCG-T-TCGTT-TCGTCGGTTGG--CTTA--G-CAATACAG-AGT
* *
71058 TCATTCCCCAGTCCTAAGATTGGAC-CAAATGGAGGGTTGCGGCAGCAGGACGACAGCATG-CTG
426 TCATT-CCCAGT-CTAAGATCGAACTCAAAT-GAGGGTTGCGGCAGCAGGA-GA-AGCATGACTG
* * **
71121 AGGGGGA-CCGGCCGAT-ATCCTGGCTTGCGCATCCTGCCCCTTTGGGTTGGCT-GGGCACCCCA
486 AGGGGGACCCGGCCGATCA-CC-GACTTGCGCATCCTGCCCCTCT-GGCCGGCTAGGGC-CCCCA
* *
71183 CCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G-AA-
547 -CGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGTGTAAG
*
71242 A-TGGA-CTGAC-GGGTTGCAGGTGCACATGCTGGGGCTCGGGCATGTGCTGGTGCCCCCGCATT
611 ATTGGATCGGACAGGGTTGCAGGTGCACATGCT-GGGCTCGGGCATGTGCTGGTG---CCGCA-T
* ** * * * *
71304 TTTTTTTTCAGCCGGGGGA-CAT-GTC-GAGCATCCGTCAGAGAACCTGAACTGGCGGCATTAGG
671 TTTTTTTGC--CCGGGCCACCATCGCCGGAGCAT-CGTCGGAGAACCTG-ACCGGCGGCATTGGG
* *
71366 GTTCCGATGAATTGGGGGGCCGAGGGGGTGCGCGCATAATGATGTGCGATGGGGGTGCTGGTACT
732 GTTCCG--GAATTGGGGGGCCGAGGGGGTGTGCGCA-CATGATGTGCGAT-GGGGTGCTGGTACT
* *
71431 TGGCCCTTTATATTGG-CCCGTATCCCTCAATCAAACCTCGAAGAACTCACACCCCTTACAGAGG
793 TGGCCC-TTATATTGGCCCCCTATCCCTC-ATCAAACCTCG-AGAACTCACACCCCTTAAAGA-G
71495 CATTTGAGATTTTCA-GTTGCTGCC
854 CATTTGAGATTTTCAGGTTGCTGCC
*
71519 TGTTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTCAAAATGGT-ACAAAATCCTGTACA
1 -G-TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTCAAAATGGTCACAAAATCCTATACA
71583 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATTACAAAAAAATACAAGTGATCACGTCTACCAAG
64 CTT-GAGTTTTTAGCTGAATTTTTTTGTGCATTACAAAAAAATACAAG-GATCACGTCTACCAAG
* * * *
71648 TTTGGGGCCAAAACTCCTT-ATGAAAAAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAA
127 TTTGGGACCAAAACTCCTTCATGAAAAAA-TTTAAAAAAATCACGAACCGTAAAAAGTTTCAAAA
** *
71712 ATTGTGAAAAATAGAAAACAAATCGTCTTGCTGTGAAACTTCACATGAAGGCTTAGGGGACCATT
191 ATCATGAAAAATAGAAAACAAATCGTCTTGCTGTGAAACTTCACATGAAGGCTTAAGGGACCATT
* * * *
71777 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATTTGCCTAAACCC
256 GTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGGCAAAAAAATGAAGATTTGCCTAAACCC
* * *
71842 ACCAACCACCCTATTGATCCACTACTTACGCATTCCACCTCTCTAGCCGGCGTAGTGCCCGTCCG
321 ACCAACCACCCTATCGATCCACGACTTACACATTCCACCTCTCTAGCCGGCGTAGTGCCCGTCC-
* * *
71907 GCTGCCCGTTTGTTTCGTCGGTTGGCTTAGCCATACAGAGTTCATTCCCAGTCTAAGATCGAACT
385 GCCGCCCGTTCGTTTCGTCGGTTGGCTTAGCAATACAGAGTTCATTCCCAGTCTAAGATCGAACT
** * * * * * *
71972 GGACTGAGGGTTGTGGCAGTAGGATAGGCATGACACTGAGGGGGACCCGGTCGATCACCGACTTG
450 CAAATGAGGGTTGCGGCAGCAGGAGAAGCATG--ACTGAGGGGGACCCGGCCGATCACCGACTTG
* * * *
72037 CGCGTCCTGCCCCTCTGGCCGGCTGAGGGCCCGCATGCTCGTTTCATAGGTTGACTTAGGCATAT
513 CGCATCCTGCCCCTCTGGCCGGCT-AGGGCCCCCACGCTCGTTTCATAGGTTGACTTAGGCATAC
*
72102 GGAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTGGATCGGACTGAGGG
577 GGAGTTCATTCCCAGTCTAAGCATAC-G-G--------T-G--TAAGATTGGATCGGAC--AGGG
* *
72167 TTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTGCCCGGGCCACCAT
627 TTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTGCCCGGGCCACCAT
* * *
72232 CGCCGGAGCATCGTCGGAGAACCTGACCGACGGCACTGGGGTTCCGGCAATTGGGGGG-CGGGGG
692 CGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGG-AATTGGGGGGCCGAGGG
*
72296 GGTGTACGCACATGATGTGCGAT-GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
756 GGTGTGCGCACATGATGTGCGATGGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
72360 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACC
821 ATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTT-CAGG-TTGCTGCC
* * * *
72421 GGTAGCCATTAAGGTATCTAAAATGGGGACAC-TTTTTTC-AAATGGTCACAAAATACTATACAC
1 -GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTCAAAATGGTCACAAAATCCTATACAC
* * *
72484 TATGAGTTTTTAGCTGAATTTTTTTGTGC-TTGCCAACAAAATACAAGGATCGCGTCTACCAAGT
65 T-TGAGTTTTTAGCTGAATTTTTTTGTGCATT-ACAAAAAAATACAAGGATCACGTCTACCAAGT
72548 TTGG
128 TTGG
72552 CTTAGGCATA
Statistics
Matches: 1652, Mismatches: 162, Indels: 246
0.80 0.08 0.12
Matches are distributed among these distances:
886 5 0.00
887 1 0.00
888 79 0.05
889 43 0.03
890 28 0.02
891 3 0.00
893 5 0.00
894 12 0.01
895 51 0.03
896 37 0.02
897 34 0.02
898 12 0.01
899 133 0.08
900 142 0.09
901 146 0.09
902 112 0.07
903 95 0.06
904 121 0.07
905 112 0.07
906 54 0.03
907 83 0.05
908 42 0.03
909 19 0.01
910 20 0.01
911 68 0.04
912 34 0.02
913 4 0.00
914 3 0.00
915 3 0.00
916 27 0.02
917 38 0.02
918 83 0.05
919 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (878 bp):
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTCAAAATGGTCACAAAATCCTATACACT
TGAGTTTTTAGCTGAATTTTTTTGTGCATTACAAAAAAATACAAGGATCACGTCTACCAAGTTTG
GGACCAAAACTCCTTCATGAAAAAATTTAAAAAAATCACGAACCGTAAAAAGTTTCAAAAATCAT
GAAAAATAGAAAACAAATCGTCTTGCTGTGAAACTTCACATGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCAGGGCAAAAAAATGAAGATTTGCCTAAACCCACCAA
CCACCCTATCGATCCACGACTTACACATTCCACCTCTCTAGCCGGCGTAGTGCCCGTCCGCCGCC
CGTTCGTTTCGTCGGTTGGCTTAGCAATACAGAGTTCATTCCCAGTCTAAGATCGAACTCAAATG
AGGGTTGCGGCAGCAGGAGAAGCATGACTGAGGGGGACCCGGCCGATCACCGACTTGCGCATCCT
GCCCCTCTGGCCGGCTAGGGCCCCCACGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGCATACGGTGTAAGATTGGATCGGACAGGGTTGCAGGTGCACATGCTGGGCTCG
GGCATGTGCTGGTGCCGCATTTTTTTTGCCCGGGCCACCATCGCCGGAGCATCGTCGGAGAACCT
GACCGGCGGCATTGGGGTTCCGGAATTGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
TTAAAGAGCATTTGAGATTTTCAGGTTGCTGCC
Found at i:72125 original size:26 final size:26
Alignment explanation
Indices: 72096--72148 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
72086 GTTGACTTAG
* *
72096 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
72122 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
72148 G
1 G
72149 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:72746 original size:26 final size:26
Alignment explanation
Indices: 72716--72768 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
72706 GTTGACTTAG
*
72716 GCATATGGAGTTCATT-CCTAGTCTAA
1 GCATACGGAGTTCATTACC-AGTCTAA
72742 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
72768 G
1 G
72769 ATCAGACCCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:73617 original size:26 final size:26
Alignment explanation
Indices: 73580--73632 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
73570 GCTGACTTAG
* *
73580 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
73606 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
73632 G
1 G
73633 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:74880 original size:875 final size:873
Alignment explanation
Indices: 72918--78417 Score: 6598
Period size: 875 Copynumber: 6.3 Consensus size: 873
72908 CGTCAAACCT
* *
72918 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCTAGAACTCAC
1 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
72983 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAAT
66 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
73048 GGGGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTA
131 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
73112 TGCATGCCAACAAAAATACAAGGATCACGTCTACTAAATTTGGGGCCAAAACTCCTTCTGAAAAA
196 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* *
73177 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
261 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
73242 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCA
326 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
73307 TTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGGTCCATGGCTTGC
391 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
73372 GCATCCCGCCTCTCAGGCCGGTGTAGTGCCCACCCGCCTGCCCGTTTGCCCGCCCGTCAGCTCGT
456 GCATCCCGCCTCTCTGGCCGGCGTAGTG------C-CC-GCCC----GCCCG-CC--C-GCTCAT
* * * * * *
73437 TTCGTCAGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGACCAAACCGGA-TCGAGGGTT
505 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATACCAGACT-AAGGGTT
* * * * **** ** * * ** * ***
73501 GTGGCAGTAAGATCGACTTG--CGT--ATCTTG-CTCCTCTGGCTGGCTGAGCGCCCGCA-CGCT
569 GTGGCAGCAAGATCG-GTAGCACATAGAGGGGGAC-CCGATCGATCCCCGA-CTTGCGCATC-CT
*** * * * * * * * *** *
73560 -CGTTTCGTGGGCTGACTTAG-GCATACGGA-G-TTGATTC-CCAG-T--C-TAAGCATAC-GAA
630 GCCCCTC-TGGTC-GGCTGAGCGC--CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-A
* ** *
73615 GTTCATTCCCAGTCTAAGATCAGACCGGGTCGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCAT
690 GTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCAT
* ** * *
73680 GTGTTGGTGCCGTATTTTTTTT-GCCCGAGG-CACCA---TC---AC-T---GAAGAACCTGACC
755 GTGCTGGTGCCACATTTTTTTTCGCTCG-GGCCACCATCGTCGGAACATCACGGAGAACCTGACC
* * * * *
73733 GATGGCATTGGGGTTCCGATGATTGGGGGGCGGGGGGGTGTGCGCACAAGATGTA
819 GACGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
73788 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGTACTCAC
1 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
73853 ACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAAT
66 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
73918 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGTGTTTTTAGCTGAATTTTTTTG
131 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
73983 TGCTTGACAA-AAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCCAAACTCCTTCTGAAAA
196 TGCATGCCAACAAAAA-TACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* *
74047 AATTTTAAAGAAGTCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAGCGAGTCGTC
260 AATTTTAAA-AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
74112 CTGCCCTGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
324 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * **
74177 CATTGGCGTGGCAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCGTGGCTT
389 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
74242 GCGCATCCCGCCTCTCCGGTCGGCGTAGTGCCCGCCCGCTCGCCCGCTCATTTCGTCGGTTGGCT
454 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCT
* * * *
74307 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCATACCGGACCT-AGTGTTGCGGCAGTAAGATC
519 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCATACCAGA-CTAAGGGTTGTGGCAGCAAGATC
* * * * *
74371 GGTAGAACATAGAGGGGGACCCGATTGATCCCCGTCTTCCGCATCCTGCCCCTCTGGTTGGCTGA
583 GGTAGCACATAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCCTCTGGTCGGCTGA
** * *
74436 GCGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAATATCAA
648 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG
* * ** *
74501 ACTAGACCGAGGGTTACATGTGCACATGCTGGCCTCGGGCATGTGCTGGTGCCACATTTTTTTTC
713 ACTGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTC
* * * *
74566 GCCCGGGCCACCATCGTCAGAACATCACCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGAT
778 GCTCGGGCCACCATCGTCGGAACATCA-CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* *
74631 TGGGGGGCCGGGGGGTGTACGCCCATGATGTG
842 TGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
74663 CGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCAC
1 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
74728 ACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAAT
66 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
74793 GGGGACACTTTTTTCAAATCGTCACAAAATCCTTTACACTTCAAGTTTTTACCTGAATTTTTTTG
131 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
74858 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGTCCAAAACTCTTTCTGAGAAA
196 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA-AAA
* * * *
74923 ATTTTTAAAAAATCTCGAACCGTAAAAAGTATCAAAAATTGTGAAAAATAGAAAACGAGTCGTCT
260 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
74988 TGGCATGAAACTTCACATAAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCAT-AAAA----
325 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
75048 A-TGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATTCTATCGATCCACAGCTTG
390 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * * *
75112 CGCATCTCGCCTTTCTGGCCGGCGTCGTGCCCGCCCACCTGCTCGCTCTTTTCGTCAGTTCGCTT
455 CGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTT
* *** ** ** * * *
75177 AGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACTAAGGGTTACGATAACATGATCAG
520 AGGCATACGGAGTTCATTCCCAGTCTAAGATCATACCAGACTAAGGGTTGTGGCAGCAAGATCGG
* * ** * * * * *
75242 CATCACGCAGAGGGGGACCCGACCGATCCCAGGCTTGCGCATCCTACCCCTCTGGTCGGTTGAGC
585 TAGCACATAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCCTCTGGTCGGCTGAGC
* * *
75307 GCCCTCACTCTCGTTTCGTTGGTTGACTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGAT-AGG
650 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCA-G
* *
75370 A-TGGACCGAGGGTTGTGGGTGCACATGCTGGCCTCGGGCATGTGCTGGTGCCACATTTTTTTTC
713 ACTGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTC
* * * * * * *
75434 GCTCGAGCCACCATCGCCGGAGCATCACCGGAGAACCTGTCCGATGGCATTGGGGTTTCGATGAT
778 GCTCGGGCCACCATCGTCGGAACATCA-CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA-
75499 TTGGGGGGGGCCGGGGGG-GTGGCGCACATGATGTG
841 TT--GGGGGGCCGGGGGGTGT-GCGCACATGATGTG
* *
75534 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCTAGAACTCAC
1 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
75599 AGCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
66 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
75664 GAGGACAATTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTT
131 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * **
75729 TGCATGCCAAAAAAAATACAAGGATCATGTCTAACAGGTTTGGCACCAAAACTCCTT-TCGAAAA
196 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAA
* * **
75793 AATTTTAAAAAAATCTCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
260 AATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
75858 -T----TG------C-CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAACTGG
324 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
75911 CATTGGTATGGTAGAAATATGAAGATGTGCCTAAACCCGCCTACCACCCCATCGATCCACGGCTT
389 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
75976 ACGTATCCCGCCTCTCTGGCCGGCATAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
454 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCT
* ** *
76041 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCATACCAGACCGATGGTTGTGGCAGCAAGATCG
519 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCATACCAGACTAAGGGTTGTGGCAGCAAGATCG
* * * * * * *
76106 GCAGCACGTTGAAGGGGACCTGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
584 GTAGCACATAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCCTCTGGTCGGCTGAG
* *
76171 CGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACAGAGCTCATTCCCAGTCTAAGCATACG
649 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-AT-C-
* * * * * * * * *
76236 GAGTTCATTCACACTCTAAGATCGGATCGGATCGAGGGTACACATGCGGGGCACGGGCATGCGCT
711 -AG---------A--CT-GGA-CCGA--GGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCT
* * * * *
76301 GGTGCCCCATTTTTTTTTGCTCGGGGCACCA---TC---AC--CA--GAGAACCTAACCGATGGC
760 GGTGCCACATTTTTTTTCGCTCGGGCCACCATCGTCGGAACATCACGGAGAACCTGACCGACGGC
* *
76356 ATTGGGGTTCC-AGCGATTGAGGAGG-TGGGGGGTGTGCGCACATGATGTG
825 ATTGGGGTTCCGA-CGATTG-GGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
76405 CGATGGGTGCTGGTACTTGACCCTTATATTCGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
1 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
76470 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
66 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
76535 GGGGACACATTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
131 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
76600 TGCATGCCAA-ATAAAATACAAGTATCATGTCTACCACGTTTGGGGCCAAAAATCCTTCTGAAAA
196 TGCATGCCAACA-AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * * *
76664 AATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTC
260 AATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
76729 TTGCCATGAAACTTCACATGAAGGCTTGAGGGACCATTTTATGAATTTACAAGCCATAAAAAT-C
324 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
76793 CAATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCT
389 C-ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
76858 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGGCCCACCCGCTCATTTCATCGATTGGC
453 TGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGC
* * * ** *
76923 TTAGGCATACGGAGTTCATTCCTAGTCAAAGATCATACCAGACTAAGTGTTGTGGCAATAGGATC
518 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATACCAGACTAAGGGTTGTGGCAGCAAGATC
* * *
76988 GATAGCACACAGAGGGGGACCCGATCAATCCCCGACTTGCGCATCCTGCCCCTCTGG-CTGGCTG
583 GGTAGCACATAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCCTCTGGTC-GGCTG
* * * *
77052 AGCGCTCGAACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCA
647 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCA
* * * * *
77117 GACCGGACCTAGGGTTGTGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCATATTTTTTTT
712 GACTGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTT
* ** * * * *
77182 CGCTTGGGCCACCATCGTCGGGGCATCTTCGGAGAACCTGACTGACAGCATTGGGGTTCCGGCGA
777 CGCTCGGGCCACCATCGTCGGAACATC-ACGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
*
77247 TTGGGGTGGCCGGGGGGTGTGCGCACTTGATGTG
841 TTGGGG-GGCCGGGGGGTGTGCGCACATGATGTG
*
77281 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCGAGAACTCAC
1 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
77346 ATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
66 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
77411 GGGGACACTTTTTTCAAATTGTCACAAAATCCTTTACACTTCGAGTTTTTAGCTGAATTTTTTTT
131 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
77476 TGCATGCCAAC-AAAATACAAGGATCATGTCTACCAAGTTTGGGGGCCAAAACTCCTTCTGAAAA
196 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT-GGGGCCAAAACTCCTTCTGAAAA
** *
77540 AATTTTAAAATAATCTTGAACCGTAAAAAGATTT-GAAAATCGTGAAAAATAGAAAACGAGTCGT
260 AATTTTAAAA-AATCCCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
77604 CTTGGCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATG
323 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
77669 GCATTGGCATGGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGAT
388 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* ** *
77734 TGCGCATCCCGCCTCTCTAGCCGGCGTAGTGCCCGCCC-CCGCGCATGCTCCTTTCGTCGGTTGG
453 TGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCC-CGCCCGCTCATTTCGTCGGTTGG
* * * * * * * *
77798 GTTCGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGAT
517 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATACCAGACTAAGGGTTGTGGCAGCAAGAT
* * * ** * **
77863 TGGTAGCACATCGAGAGGGACCCGATCGATCCCCGGTTTGCGCATCCTGCCCCTTTGGAAGGCTG
582 CGGTAGCACATAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCCTCTGGTCGGCTG
* * * * * **
77928 AGCGCCCGCATGCTCATTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCTAGTCTAAGATTG
647 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCA
* * * **
77993 GACTGGATCGAGGGTTGTGGGTGCACATGCTGGGCTCGGGCATTTGCTAATGCCGA-ATTTTTTT
712 GACTGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-ACATTTTTTT
* * * * * * * * * *
78057 T-ACACGAGG-CACCATCGCCGGAGCATCGTCGGAGAACCTAACCGGCGACATTGGGGTTTCGGC
776 TCGCTCG-GGCCACCATCGTCGGAACATC-ACGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
** * * *
78120 GATTGGAGGATCGGGGGGGTGTGCACAAATGATGTG
839 GATTGG-GGGGCCGGGGGGTGTGCGCACATGATGTG
*
78156 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
1 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
78221 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
66 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
78286 GGGGACACTTTTTTCAAATGCTGACAAAATCCTGTACACTTCGACTTTTTAGCTGACTTTTTTTA
131 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** * * *
78351 TGCATGCCAACAAAAATACAAGGATCACGTCTAATAAGTTTGGCGCCAAAAATCCTTCTAAAAAA
196 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
78416 AT
261 AT
78418 GGCATTGGCA
Statistics
Matches: 4005, Mismatches: 508, Indels: 229
0.84 0.11 0.05
Matches are distributed among these distances:
855 2 0.00
856 78 0.02
857 9 0.00
858 18 0.00
859 55 0.01
860 10 0.00
862 1 0.00
863 84 0.02
864 71 0.02
865 266 0.07
866 8 0.00
867 6 0.00
868 116 0.03
869 266 0.07
870 199 0.05
871 697 0.17
872 208 0.05
873 3 0.00
874 34 0.01
875 748 0.19
876 727 0.18
877 7 0.00
878 1 0.00
879 3 0.00
881 2 0.00
882 8 0.00
883 322 0.08
885 56 0.01
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (873 bp):
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCATACCAGACTAAGGGTTGTGGCAGCAAGATCGGT
AGCACATAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACT
GGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCT
CGGGCCACCATCGTCGGAACATCACGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGG
GGGCCGGGGGGTGTGCGCACATGATGTG
Found at i:76243 original size:26 final size:26
Alignment explanation
Indices: 76203--76255 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
76193 GTTCACTTAG
* *
76203 GCATACAGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCACACTCTAA
* *
76229 GCATACGGAGTTCATTCACACTCTAA
1 GCATACAGAGCTCATTCACACTCTAA
76255 G
1 G
76256 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGCTCATTCACACTCTAA
Found at i:80207 original size:872 final size:872
Alignment explanation
Indices: 78737--81969 Score: 4155
Period size: 872 Copynumber: 3.7 Consensus size: 872
78727 CCCAATATAA
* * * * * * *
78737 GCATACAGAGTTCATTCCCAGTTTAATATCAGA-TCGGCCCGAGGGTTGCAGGTGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTCAGACCGAGGGTTGCAGGTGCACATGCTGG
* * * * * * *
78801 GCTCAGGCATATGCTGGTGCCGCATTTCTTTTCGCCCGGGCCACCATCGCCAGAGAAC-C---TA
66 GCTCGGGCATGTGCTGGTGCTGCATTTTTTTTCGCCCGGGGCACCATCACCAGAGAACGCGGAGA
* * * * *
78862 A-CTG---GA-GGCATTGGGGTT-CTAGTGATTGGGGGGTCGGGGGGGTGTGCGCACATAATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGA-CGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
** * * * *
78921 TC-ATTAGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTTGAGAACTGA
195 -CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
78985 CACCCCCTTAAAAAGCATTAGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAA
259 CACCCCCTTAAAAAGCATT-GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
79050 TTG-GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAATTTTTAGCTGAATTTTTT
323 -TGAGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAA-TTTTT
* * * *
79114 TTTTGCATGCCTACAAAAATACAAGGATCATGTATACCAAGTTTGGGGCTC-AAACTCCCTCTAA
386 TTTTGCATGCC-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAAACTCCTTCTGA
*
79178 AAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
449 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
79243 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
79308 TGGCATTGGCATGACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGG
579 TGGCATTGGCAAGGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
79373 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTG
644 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * * *
79438 GCTTAGGCATACAGAGTTTATTCCCAGTCTAAGATCAGACTGGACCGAGGGTCGCGGTAGCAGGA
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACAGAGGGTTGTGGTAGCAGGA
* ** * * * *
79503 TTGGCAGCACGCTGAACGGGACCCGATCGATCCCCGGCATGCGCATCCTGCCCCTTTGGTTGACT
774 TCGGCAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCTACCCCTTTGG-CGACT
*
79568 GAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAG
838 GAACGCCCGCACGCTCATTTTGTGGGTTGACTTAG
**
79603 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-AGACCGAGGGTTGCAGGTGTGCATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTCAGACCGAGGGTTGCAGGTGCACATGCTGG
*
79667 GCTCGGGCATGTGCTGGTGCTGCATTTTTTTTCGCCCGGGGCACCATCACC-GAGCATCGTCGGA
66 GCTCGGGCATGTGCTGGTGCTGCATTTTTTTTCGCCCGGGGCACCATCACCAGAG-AACG-CGGA
* * *
79731 GAACTTGACCGACGGCATTGGGGTTCCGACGATT-AGGGGGCCGGGGGGTGTACGCACATGATGT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGT
79795 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
79860 CACCCGCTTAAAAAGCATTGGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAA
259 CACCCCCTTAAAAAGCATT-GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* **
79925 TGAGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTAAGAGTTTTTAGCTGAA-TTTTTT
323 TGAGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTT
*
79989 GTGCATGCCA-ATAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
388 TTGCATGCCACA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
*
80053 AATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTC
452 AATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
80118 TTGCCATGAAACTTCACATGAAGGATTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGG
517 TTGCCATGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGG
**
80183 CATTGGCAAGGCA-AAACTATGAAGATGTAACTAAACCCACCTACCACCCTATCGATCCACGGCT
582 CATTGGCAAGGCACAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
80247 TGTGCATCCCGCCTCTCTGGCCGACGTAGTGCCC-CTCCACCCGCCCGTTTGTTTCGTCGGTTGG
646 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC-CCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * *
80311 TTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTA-AGGGTTATGGTAGCAAGA
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGAC-AGAGGGTTGTGGTAGCAGGA
* * ** * * **
80375 TCGGCAGCATGCTGAGGGGGACCGGGCCAATCCCCAGCTTACGCATCCTACCCCTTTGGCCGGTT
774 TCGGCAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCTACCCCTTTGG-CGACT
* * *
80440 GAATGCCCGCACGCTCGTTTTATGGGTTGACTTAG
838 GAACGCCCGCACGCTCATTTTGTGGGTTGACTTAG
* * * *
80475 GCATACGGAGTTCATTCCCAATCTAAGATCGGAC-C-GAACCAAGGGTTACGGGTGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTCAG-ACCGAGGGTTGCAGGTGCACATGCTG
* * * **** ** *
80538 GGCTCGAGCATGTGCTGGTGCCT-CATTTTTTTTTGCCTGGGGCACCATCGTTGGAGCATTGTCA
65 GGCTCGGGCATGTGCTGGTG-CTGCATTTTTTTTCGCCCGGGGCACCATCACCAGAG-AACG-CG
* * *
80602 GAGAACCTGACCAACGGCATTGGGGTTCCAACGATTGGGGGGGCCGGGGGGTTGTGTGCACATGA
127 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGG-TGTGCGCACATGA
* *
80667 TGGGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
80732 TCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
256 TCACACCCCCTTAAAAAGC-ATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * *
80797 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATGCACTTCCATTTTTTAGCTGAATTTT
320 AAATGAGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTT
* * ** * *
80862 TCTCTGCATGCCAGCAAAAATACAAGGATCACGTCTAAAAATTTTGGGCCCAAAACTCCTTCTGA
385 TTTTTGCATGCCA-CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
** * * *
80927 AAATCTTTTAAAAAAATCCCGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTT
449 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
80992 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAA
81057 TGGCATTGG-AATGGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
579 TGGCATTGGCAA-GGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* **
81121 GCTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCATCCGCTCGTTTCGTCGGTT
643 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * *
81186 GGCTTAAGCTTACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACAGAGGGTTGTAGTAGCAGG
708 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACAGAGGGTTGTGGTAGCAGG
* * * * * * *
81251 ATCAGCAGCACGTTGAGGGGGACTCGATCGATCCCTGGCTTACACATCCTACCCCTCTGGCCAGC
773 ATCGGCAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCTACCCCTTTGGCGA-C
* *
81316 TGAACGCCCGCACGCTCATTTCGTGGGTTGACTTAA
837 TGAACGCCCGCACGCTCATTTTGTGGGTTGACTTAG
*
81352 GCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCGGATTGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C-----TC--A---GAC
** * * *
81417 CGAGGGTTGTGGGTGCACATGCTGGGCTTGGGCATGTGCTGGTTCTGCATTTTTTTTCGCTC-GG
41 CGAGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTTTTCGCCCGGG
** * *
81481 GCAACCATCACCAGAGAACGCGAGAGAACCTGACCGGTGGCATTGGGGTTCTGACTATTGGGGGG
106 GC-ACCATCACCAGAGAACGCG-GAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGG
* * *
81546 GCCGGGGGGGTGTGCGCACATGATGTGTGATAGGTGCTGGTACTTGGCACTTATATTGGCCCCCT
169 GCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
81611 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
233 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCA-TTGAGATTTTACAGGTTTGCT
* ** *
81676 GCCAGTAGCCATTCAAGTGTCT-AAAAAAGGGACACTTTTTTCAAATGGCCACAAAATCCTATAC
297 GCCAGTAGCCATTAAAGTGTCTGAAATGA-GGACACTTTTTTCAAATGGTCACAAAATCCTATAC
* *
81740 ACTTCTAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATGCAAGGATCACGTCTACCAA
361 ACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCC-ACAAAAATACAAGGATCACGTCTACCAA
* * * ** * * *
81805 GTTTGGGGCCAAAACTCTTTCTCAAAAAATTTTAAAAAATTATCGAACCATAACAGGTTTCAAAA
425 GTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
* * * *
81870 ATCGTGGAAAATAGAAAATGAGTCGTCGTGCCATGAAACTTCACATGAAGGCTTAAGAGACCATT
490 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGAGACCATT
* *
81935 GTCTGAATTTACAAGCCAAAAAAATGGCATTGGCA
555 GTATGAATTTACAAGCCATAAAAATGGCATTGGCA
81970 CGCTCGTTTC
Statistics
Matches: 2057, Mismatches: 240, Indels: 103
0.86 0.10 0.04
Matches are distributed among these distances:
865 3 0.00
866 100 0.05
867 1 0.00
868 1 0.00
871 9 0.00
872 513 0.25
873 58 0.03
874 16 0.01
875 383 0.19
876 37 0.02
877 437 0.21
878 7 0.00
879 1 0.00
880 1 0.00
881 1 0.00
890 1 0.00
892 1 0.00
898 1 0.00
901 5 0.00
902 411 0.20
903 69 0.03
904 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (872 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTCAGACCGAGGGTTGCAGGTGCACATGCTGG
GCTCGGGCATGTGCTGGTGCTGCATTTTTTTTCGCCCGGGGCACCATCACCAGAGAACGCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAAAGCATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGA
GGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTTTG
CATGCCACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
TTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCAAGGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACAGAGGGTTGTGGTAGCAGGATCGGCAG
CACGCTGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCTACCCCTTTGGCGACTGAACGCCC
GCACGCTCATTTTGTGGGTTGACTTAG
Found at i:81387 original size:26 final size:26
Alignment explanation
Indices: 81349--81404 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
81339 TGGGTTGACT
* *
81349 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGCC
81375 TAAGCATACGGAGTTCATTCCCAGCC
1 TAAGCATACGGAGTTCATTCCCAGCC
81401 TAAG
1 TAAG
81405 ATCGGATTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGCC
Found at i:83919 original size:26 final size:26
Alignment explanation
Indices: 83883--83935 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
83873 GTTGACTTAG
83883 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
83909 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
83935 G
1 G
83936 AATGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:84547 original size:885 final size:887
Alignment explanation
Indices: 83018--89750 Score: 7776
Period size: 885 Copynumber: 7.7 Consensus size: 887
83008 GTTGACTTAG
* * *
83018 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGAGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGGTGCACATGCTGGG
* * * * *
83083 CTCAGGCATGTGCTGGTGCTGCATTTTTTTTCGCCTGGGGTACCATCGTCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGGGG---CA----C----CATCGCCGGAG
* * * * * *
83148 AACTTGACCGACGGCATTGGGGTTTCGACGATT-GGGGG--GTGGGGGTGTACGCCCATGATGTA
120 AACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
83210 CGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCAC
185 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
83275 ACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTACCAGT-GCCATTAAAGTGTCTGAAAT
250 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
83339 GGGGACACTTTTTTCAAATGGTCAAAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
315 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
** * * * * *
83404 TGCATGCCATGAAAAATACAAGGATAACGTCTACCAAGTTTGGAGTCAAAACTACTTCTGCAAAA
380 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * *
83469 AGTTT-AAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCT
445 ATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
83533 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
510 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
83598 ATTGGCATGGTAGGAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTG
575 ATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * * * *
83663 AGCATCCCATCTCTCTGGCCGACGTAGTGCCC-CCCGCCCGTTCATTTCATTGGTTGGC-TAGGC
640 AGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* *
83726 ATACAGAGTTCATTCCCAGTCTAAGATCAAATCAGACTGAGGGTTACGGTAGCAGGATCGGCAGC
705 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGGCAGC
* * ** *
83791 ACGTAGAGGGGGACCCGACTGATCCTCGATTTACGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
770 ACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
* **
83856 GCACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
835 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* * *
83909 GCATATGGAGTTCATTCCCAGTCTAAGAAT-GGACCAGACCGAGGGTTGCAGGTGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCAGACCGAGGGTTACGGGTGCACATGCTGG
* * * *
83973 GCTCGGGCATGTGCTAGTGCCGTATTTTTTTTCGCCCGGGGCACCATGGCCGGAGAACCTAACTG
65 GCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGGGGCACCATCGCCGGAGAACCTGACCG
* * * * *
84038 GCGGCATTGGGGTTCCGACGATTGGGGAGACGGGGGGGTGTGCGCACATGATGTGCGGTGGGTGT
130 ACGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
84103 TGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
84168 AGTGCATTTGAGATTTTATAGGTTTACTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
260 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
84233 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGATGAATTGTTTTGTGCATGCCAA
325 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAA
* * *
84298 CAAAAATGCAAGGATCACATGTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
390 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
* * * * * *
84363 AATCCCAAATCGTAAAAAGTTTTGAAAATCGAGAAAAATAGAAAACGAGTTGTCTTGCCCTGAAA
455 AATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* ***
84428 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCACAA
520 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* *
84493 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGCGGCTTGCGCATCCCGC
585 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGAGCATCCCGC
* * * * *
84558 CTCTCTGGTCGGCGTAGTGCCCGCCCGTCCGCTCATTTCGTCAGTTGGCTTAGGCATACAGAGTT
650 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTT
** * * * * *
84623 CATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTACGGCAGTAGGATCGGTAGCACATAGAGGG
715 CATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGGG
* * *
84688 GGACCCAACCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGT
780 GGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* *
84753 TTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAA
845 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* *
84796 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGGTGCACATGCTGGG
* *
84861 CTCGGGCATGTGCTGGTACCGTA-TTTTTTTCGCCCGGGGCACCATCGCCGGAGAACCTGACCGG
66 CTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGGGGCACCATCGCCGGAGAACCTGACCGA
* *
84925 CGGCATTGAGGTTCCGACGATTGGGGGGGCC--GGGGGTGTGCACACATGATGTGCGATGGGTGC
131 CGGCATTGGGGTTCCGACGATT-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
84988 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
85053 AGTGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGGCACTT
260 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * *
85118 TTTTCAAATGCTCACAAAATCCTGTACACTTCGAGTTTTTACCTGAATTTTTTTGGGCATGCCAA
325 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAA
* * *
85183 CAAAAATACAAAGATCACGTCTACCAAGTTTAGGGCCAAAATTCCTTCTGAAAAAATTTTAAAAA
390 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
** * * * * *
85248 AATCTTGAATCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTTGTCTTGCCATGACA
455 AATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
85313 CTTCACATGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
520 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* * *
85378 CT-GAAATATGAAGATTTGCCTAAACCCACCGACCACCTTATCGATCCACGGCTTGCA-CA-CCT
585 -TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG-AGCATCC-
* * *
85440 CGCCTTTCTGGTCGACGTAGTGCCCGCCCACCCGCCCGCTCGTTTCGTAGGTTGGCTTAGGCATA
647 CGCCTCTCTGGCCGACGTAGTGCCCG----CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
** * *
85505 TGGAGTTCGTTCCCAGTCTAAGATCAGACCAGA-TCGAGGATTGA-GGTAGCAGGATCGGCAGCA
708 CAGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTT-ACGGTAGCAGGATCGGCAGCA
* * * * * * *
85568 CGTAGAGGGGGACCCGACCAATCCCCGGCTTCCACATCCTGCCCCTTTGGCTGGCTGAGTGCCCA
771 CGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
* * * *
85633 AACGGTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA-T-----TC---
836 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* * *
85676 -C---C--AG-----T-----T-TAAGATCGGACCGGACCGAAGGTTACGGGTGCACATGCCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGGTGCACATGCTGGG
* * * * * *
85724 CTCGGGCATGTGCTGGTGCTGCATTTTTTTTCGCCTGGGCCACCATCACCGGAGAACCTCACCGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGGGGCACCATCGCCGGAGAACCTGACCGA
*
85789 CGGCATTGGGGTTCCGACGATTGGGGGGGGCCGGGGGCGGTGTGCGAACATGATGTGCGATGGGT
131 CGGCATTGGGGTTCCGACGATT--GGGGGGCCGGGGG-GGTGTGCGCACATGATGTGCGATGGGT
* * *
85854 GCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCAT
193 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
85919 AAAGGGCATTT--G-------A-----GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
258 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
85970 TTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGC-GAAATTGTTTTGTGCATGC
323 TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTG-AATTGTTTTGTGCATGC
* * *
86034 CAACAAAAATACAAGGATGATGTCTACCAAGTTTGGGGCTAAAACTCCTTCTGAAAAAATTTTAA
387 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
* *
86099 AAAAATCCTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATG
452 AAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
86164 AAACTTCACATGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCAGAAAAATGGCATTGGCA
517 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * * *
86229 TGGCAAAATATATGAAGATGTGCCCAAACCCACCTATCACCCTATCGATCCAC-GATT-TGCATA
582 TGGTAGAA-ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGAGCAT-
* * * * ** *
86292 GCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACTCATTTCATCATTTGGCTTAGGAATAC
645 -CCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * ** *
86357 AAAGTTCATTCCCAGACTAAGATTAGACCAGATTGAGGGTTGCGGTAGTAGGATCAACAGGACGT
709 AGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGGCAGCACGT
* * * ** * *
86422 AGAGGGGGACCC-A-C-A-CGCTC-GTTTCGTGGGT--TG--ACT-TAGG-C--AT-A-CG---G
774 AGAGGGGGACCCGACCGATC-CCCGGCTT-GCGCATCCTGCCCCTCT-GGCCGGCTGAGCGCCCG
* * *** * ** * *
86469 -A-GTTC-ATTC-CCAG-T--C-TAAGCATACAAAGTTCATTCCTAGTCTAA
836 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
**
86513 G-AT-C-G-G---A---CC-G-----GAT-----C--A---AGGGTTGTGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGGTGCACATGCTGGG
* * * * * *
86552 CTCAGCCATGTGCTGGTGCTGCATTCTTTTTT-GCCCGGGGCATCATCGTCGGAGAACCTGACCG
66 CTCGGGCATGTGCTGGTGCCGTATT-TTTTTTCGCCCGGGGCACCATCGCCGGAGAACCTGACCG
* * * *
86616 ACGGTATTGGGGTTTCGACGATTGGGGGGGC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGC
130 ACGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
86680 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * *
86745 AGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGGGACATTT
260 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
86810 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAA
325 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAA
* * * *
86875 CAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATGCTTCTAAAAAAATTTTAAAAA
390 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
* *
86940 AATCTCGAACCATAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
455 AATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
87005 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCACGG
520 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
* * *
87070 TAGAAATATGAAGATATGCCTAAACCCACCTAACACCCTATCGATCCACGGCTTGCGCATCCCGC
585 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGAGCATCCCGC
* * * *
87135 CTCTCTGGCCGACGTAGTGCCCGACCGTCCGCTTGTTTCGTCGGTTGGCCTAGGCATACAGAGTT
650 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTT
* * * * * * *
87200 CATTCCCAGTCTAAGATCAGACCGGA-TCGAGGGTTACAGTAGTAGGATCAGCAGCATGGAGAGA
715 CATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGG
* ** * *
87264 GGGACCCGACCGATCCCCGGGTTATGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGTACGCTCG
779 GGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * * * * * *
87329 TTTTGTGAGTTGACTTAGGCTTACAGAGTTCTTTCCCAGTTTAA
844 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* * * * * * * *
87373 CCATACGAAGTTCTTTCCCAGTCTATGATCGAACCAGACCGAGGGTTGCGGGTGCACATGCTAGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGGTGCACATGCTGGG
** * * * * * *
87438 CTTAGGCATGTGCTGGTGTCGTATTTTTTTTCACCTGCGGCACCATCGCCGGAGAACCTGGCCGG
66 CTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGGGGCACCATCGCCGGAGAACCTGACCGA
* * * ** *
87503 TGACATTGGGGTTCCGACGATTAGGGGG--TAGGGGGTGTGCGCACATGATGTGCGGTGGGTGCT
131 CGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
87566 GGCACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
196 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
87631 GAGCATTTGAGATTTTACAGGTATGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTT
261 GAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
87696 TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAA
326 TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAC
*
87761 AAAAACACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
391 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
* * * *
87826 ATCTCGAATCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATTAAAC
456 ATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * *
87891 TTCACATGAAGGCTTGAGGGACCATTGTATGTATTTATAAGCCATAAAAATGGCATTGGCATGGC
521 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGT
* * * *
87956 AAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCAT-ACGCATCCCGC
586 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGA-GCATCCCGC
* * * *
88020 CTCTCTGGCCGACGTAGTGCCCGCCTGCCCACCTGCTTGTTTCATAGGTTGGCTTAGGCATACAG
650 CTCTCTGGCCGACGTAGTGCCCGCC--CGC-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACAG
* * * * * * * **
88085 AGTTCATTCCCAGTCTAAGATCAAACCAGACTGAAGGTTAGGGCAACAGGATCGACAACACACAG
711 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGGCAGCACGTAG
* * * * * *
88150 AGGGGGACCCGATCGATCCCCGTCTTGCGCATCCTGCCCCTCTAGCCAGTTGAGCACCCGCACGC
776 AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
*
88215 TTGTTTCGTGGGTTGAC-T-----TA--G-G--------C-A--T-A
841 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* *
88241 G---A--GAGTTCATTCCCAGTCTATGATCGGACCAGACCGAGGGTTACGGGTGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGGTGCACATGCTGGG
* * * * * *
88301 CTCGAGCAAGTGCTGGTGCCACT-TTTTTTTTTGCCCGGGGGGGGAAAACACCCCATCACTCGAT
66 CTCGGGCATGTGCTGGTGCC-GTATTTTTTTTCGCCC----GGGG----CA--CCATCGC-CG-G
* * *
88365 AGAAACCTGACC-AGCGGCATTGGGGTTCCGGCGATTAGGGGGCCGGGGGGGTGTGTGCACATGA
118 AG-AACCTGACCGA-CGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGGTGTGCGCACATGA
* * * * *
88429 TGTACAATGGGTGCTGGTACTTGGCCCTTATATTGG-CCTCTAT-CCTCATCGAACCTCAAGAAC
181 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
88492 TCCACAGCCCCTTAAAGAGCA--AGAGATTTTATAGGTTTTCCGCTTG-CAGTAGCCATTAAAGT
246 T-CACACCCCCTTAAAGAGCATTTGAGATTTTATAGG-TTT--GC-TGCCAGTAGCCATTAAAGT
*
88554 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGCCGTTTTTAGCTG
306 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCG-AGTTTTTAGCTG
* * *
88619 AATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCATGTCTACCAAG-TTGGAG--AAAACTCC
370 AATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
** * *
88680 TTCTGAGAAAAA-TTT-AAAAAATCCTAAAACCGT-AAAAGTATCAAAAATCGTGAAAAATAGAA
435 TTCTGA-AAAAATTTTAAAAAAATCC-CGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAA
* *
88742 AACAAGTCGTCTT-CCATGAAACTTTCA-ATGAA-GC---AGGGACCATTTTATGAATTTACAAG
498 AACGAGTCGTCTTGCCATGAAAC-TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
88801 CCATAAAAATGG-ATTGGGTATGGT-GAAA-ATGACA-ATGTGCCT-AA-CC-CCGACCACCCTA
562 CCATAAAAATGGCATT-GGCATGGTAGAAATATGA-AGATGTGCCTAAACCCACCTACCACCCTA
* * *
88859 TCG-TCCAC-GCTT--GCA-CACCGCCTCTCTGGCTGACGTAACTCTGCCCGCATCGCCCGCTCG
625 TCGATCCACGGCTTGAGCATC-CCGCCTCTCTGGCCGACGT-A--GTGCCCGC-CCGCCCGCTCG
* * **
88919 TTTCGTCGATTGGCTTAGGCAT-CGGAGTTCATT-CCAGTCTAAGAT-AGACCCAAGAC-GAGAA
685 TTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA-CC-AGACTGAGGG
* * * * *
88980 TGA-GGCA-CAGGATGCGGCAGC-CGCAGA-GGGGACCCGACTGAT-CTCGGCTTGCGCATCCTG
748 TTACGGTAGCAGGAT-CGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTG
* * *** *
89040 -CCCTCTGG-CTGCTGAG-TCCTAAACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
812 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
89102 TCCCAATCTAA
877 TCCCAATCTAA
* * * * *
89113 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAAATCGAAGGTTACGGGTGCACATGCTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGGTGCACATGCTGGG
* *
89178 CTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCTCGGGCCACCATCGTCGGTGTATCATCGGAG
66 CTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGGGGCACCA---TC---G---C--CGGAG
* *
89243 AATCTGACCGACGGCATTGGGGTTCCGATGATTTGGGGGGCCAGGGGGGGTGTGCGCACATGATG
120 AACCTGACCGACGGCATTGGGGTTCCGACGA-TTGGGGGGCC-GGGGGGGTGTGCGCACATGATG
* * *
89308 TGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCTTCATCAAACCTTGAGAACTC
183 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
89373 ACACCCCCTTAAAAAGCATTTGAGATTTTATAGGATTGCTGCCAGTAGCCATTAAAGTGTCTGAA
248 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
89438 ATGGGGACATTTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTT
313 ATGGGGACA-CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTT
* *
89503 TTGTGCATGCCAACAAAAATACAAGGATCACGGCTACCAAGTTTGGGGCCAAAACTACTTGCTGA
377 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CTGA
** * *
89568 AAAAATTTTAAAAAAATCTTGAACCATAAAAA-TGTTTCAAAATCGTGAAAAATAGAAATAACGA
441 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGT-TTTAAAAATCGTGAAAAATAG-AA-AACGA
* *
89632 GTCGTCTTGCCATGAAACTTCACATAAAGGCTTAAGGGAACCATTGTATGAATTTACGAGCCATA
503 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG-ACCATTGTATGAATTTACAAGCC--A
* *
89697 TAAAAATGGCAATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTAC
565 TAAAAATGGC-ATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
Statistics
Matches: 5007, Mismatches: 593, Indels: 476
0.82 0.10 0.08
Matches are distributed among these distances:
824 97 0.02
825 3 0.00
826 8 0.00
828 104 0.02
829 8 0.00
831 2 0.00
832 1 0.00
833 5 0.00
834 5 0.00
835 1 0.00
836 1 0.00
837 158 0.03
838 287 0.06
839 9 0.00
840 7 0.00
841 5 0.00
842 1 0.00
843 1 0.00
844 8 0.00
845 2 0.00
846 2 0.00
847 5 0.00
848 5 0.00
849 3 0.00
850 1 0.00
851 114 0.02
852 9 0.00
853 11 0.00
854 299 0.06
855 77 0.02
856 15 0.00
857 14 0.00
858 18 0.00
859 18 0.00
860 68 0.01
861 5 0.00
862 6 0.00
863 146 0.03
864 74 0.01
865 12 0.00
866 3 0.00
867 20 0.00
868 105 0.02
869 45 0.01
870 4 0.00
871 4 0.00
872 5 0.00
873 22 0.00
874 54 0.01
875 63 0.01
876 79 0.02
877 228 0.05
878 225 0.04
879 57 0.01
880 51 0.01
881 20 0.00
882 13 0.00
883 155 0.03
884 146 0.03
885 1166 0.23
886 186 0.04
887 255 0.05
888 7 0.00
889 312 0.06
890 6 0.00
891 116 0.02
892 2 0.00
893 10 0.00
894 6 0.00
895 7 0.00
896 12 0.00
897 2 0.00
898 2 0.00
899 4 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGGTGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGGGGCACCATCGCCGGAGAACCTGACCGA
CGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
ATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGT
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGAGCATCCCGCC
TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTC
ATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGGGG
GACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
Found at i:89123 original size:26 final size:26
Alignment explanation
Indices: 89087--89139 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
89077 GTTGACTTAG
89087 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
89113 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
89139 G
1 G
89140 ATCGAACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Done.