Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22157061
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 74000 characters in sequence are not A, C, G, or T
File 106 of 113
Found at i:20764783 original size:25 final size:21
Alignment explanation
Indices: 20764734--20764788 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
20764724 TGATAGAAAA
*
20764734 GATCGATCCCCTTAAGGAAGG
1 GATCGATCCCCTCAAGGAAGG
20764755 GATCGATCCCCTCAAGGAAGG
1 GATCGATCCCCTCAAGGAAGG
20764776 GATCGATCCCCTC
1 GATCGATCCCCTC
20764789 CATTACCAGA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.18
Consensus pattern (21 bp):
GATCGATCCCCTCAAGGAAGG
Found at i:20769883 original size:4 final size:4
Alignment explanation
Indices: 20769876--20769904 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
20769866 AGATTCTTAC
20769876 TTAT TTA- TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
20769905 TGCATGCATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
3 3 0.12
4 21 0.88
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTAT
Found at i:20777635 original size:5 final size:5
Alignment explanation
Indices: 20777625--20777655 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
20777615 TAGATGTTTC
20777625 CAAAA CAAAA CAAAA CAAAAA CAAAA CAAAA
1 CAAAA CAAAA CAAAA C-AAAA CAAAA CAAAA
20777656 AGAAAAAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.81, C:0.19, G:0.00, T:0.00
Consensus pattern (5 bp):
CAAAA
Found at i:20777647 original size:11 final size:11
Alignment explanation
Indices: 20777625--20777661 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
20777615 TAGATGTTTC
20777625 CAAAAC-AAAA
1 CAAAACAAAAA
20777635 CAAAACAAAAA
1 CAAAACAAAAA
20777646 CAAAACAAAAA
1 CAAAACAAAAA
*
20777657 GAAAA
1 CAAAA
20777662 AGAAAAAGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
10 6 0.24
11 19 0.76
ACGTcount: A:0.81, C:0.16, G:0.03, T:0.00
Consensus pattern (11 bp):
CAAAACAAAAA
Found at i:20779570 original size:105 final size:107
Alignment explanation
Indices: 20779398--20779597 Score: 305
Period size: 105 Copynumber: 1.9 Consensus size: 107
20779388 AAGATCTCTA
* * * * * * *
20779398 GGCACAATTTTTAAGACTTTCGAGCTAAATAATTTTGAATTTTCAAAGTTTCAATGCCTTTATTA
1 GGCACAAATTTTAAGACATTCAAGCAAAATAATTTTAAATTTTCAAAGTTTCAATGCCTCTAATA
* *
20779463 TATGAGGAGCATTCAAAGATTTTGA-ATCTTTAAGACCTCCG
66 TATAAAGAGCATTCAAAGATTTTGAGATCTTTAAGACCTCCG
20779504 GGCACAAATTTTAAGACATTCAAGCAAAAT-ATTTTAAATTTTCAAAGTTTCAATGCCTCTAATA
1 GGCACAAATTTTAAGACATTCAAGCAAAATAATTTTAAATTTTCAAAGTTTCAATGCCTCTAATA
20779568 TATAAAGAGCATTCAAAGATTTTGAGATCT
66 TATAAAGAGCATTCAAAGATTTTGAGATCT
20779598 CTAAAACTCC
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
105 54 0.64
106 30 0.36
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (107 bp):
GGCACAAATTTTAAGACATTCAAGCAAAATAATTTTAAATTTTCAAAGTTTCAATGCCTCTAATA
TATAAAGAGCATTCAAAGATTTTGAGATCTTTAAGACCTCCG
Found at i:20779746 original size:127 final size:127
Alignment explanation
Indices: 20779487--20779755 Score: 321
Period size: 127 Copynumber: 2.1 Consensus size: 127
20779477 AAAGATTTTG
* * ** *
20779487 AATCTTTAAGACCTCCGGGCACAAATTTTAAGACATTCAAGCAAAATATTTTAAATTTTCAAAGT
1 AATCTCTAAGACCTTCGGGCACAAATTTTAAGACACCCAAGCAAAACATTTTAAATTTTCAAAGT
*
20779552 TTCAATGCCTCTAATATATAAAGAGCATTCAAAGATTTTGAGATCTCTAAAACTCCAGACAT
66 TTCAATGCCTCTAATATAGAAAGAGCATTCAAAGATTTTGAGATCTCTAAAACTCCAGACAT
* * * *
20779614 TATCTCTAAGACCTTGGGGCACAATTTTTAAGACCCCCAAGCAAAACATTTTTAAAATTTT-AAA
1 AATCTCTAAGACCTTCGGGCACAAATTTTAAGACACCCAAGCAAAACA-TTTT-AAATTTTCAAA
* * * * * * *
20779678 GTTTCAATGCCTCT-AT-TACGATA-AGCATTTAAAGATTTTGAGATTTGTAAAATCTTCGGGCA
64 GTTTCAATGCCTCTAATATA-GAAAGAGCATTCAAAGATTTTGAGATCTCTAAAA-CTCCAGACA
20779740 T
127 T
20779741 AATCTCTAAGACCTT
1 AATCTCTAAGACCTT
20779756 TGGGAAAAAC
Statistics
Matches: 120, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
126 28 0.23
127 64 0.53
128 21 0.17
129 7 0.06
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.33
Consensus pattern (127 bp):
AATCTCTAAGACCTTCGGGCACAAATTTTAAGACACCCAAGCAAAACATTTTAAATTTTCAAAGT
TTCAATGCCTCTAATATAGAAAGAGCATTCAAAGATTTTGAGATCTCTAAAACTCCAGACAT
Found at i:20779891 original size:22 final size:23
Alignment explanation
Indices: 20779841--20779892 Score: 56
Period size: 22 Copynumber: 2.3 Consensus size: 23
20779831 TAAGATCATT
*
20779841 AAGACCTCCGAGCACAATCTTTA
1 AAGACCTCCGAGCACAATCTTCA
*
20779864 AA-ACCTCC-AGGCATAATC-TCA
1 AAGACCTCCGA-GCACAATCTTCA
20779885 AAGACCTC
1 AAGACCTC
20779893 GGGTAGGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
21 5 0.20
22 18 0.72
23 2 0.08
ACGTcount: A:0.37, C:0.33, G:0.12, T:0.19
Consensus pattern (23 bp):
AAGACCTCCGAGCACAATCTTCA
Found at i:20780058 original size:7 final size:7
Alignment explanation
Indices: 20780048--20780107 Score: 104
Period size: 7 Copynumber: 8.7 Consensus size: 7
20780038 ATAAAATCAA
*
20780048 AAAAACC
1 AAAAAGC
20780055 AAAAAGC
1 AAAAAGC
20780062 -AAAAGC
1 AAAAAGC
20780068 AAAAAGC
1 AAAAAGC
20780075 AAAAAGC
1 AAAAAGC
20780082 AAAAAGC
1 AAAAAGC
20780089 AAAAAGC
1 AAAAAGC
20780096 AAAAAGC
1 AAAAAGC
20780103 AAAAA
1 AAAAA
20780108 AAAGAAAAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
6 6 0.12
7 45 0.88
ACGTcount: A:0.73, C:0.15, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAGC
Found at i:20780115 original size:7 final size:7
Alignment explanation
Indices: 20780062--20780135 Score: 51
Period size: 7 Copynumber: 10.1 Consensus size: 7
20780052 ACCAAAAAGC
*
20780062 AAAAGCA
1 AAAAGAA
*
20780069 AAAAGCA
1 AAAAGAA
*
20780076 AAAAGCA
1 AAAAGAA
*
20780083 AAAAGCA
1 AAAAGAA
20780090 AAAAGCAA
1 AAAAG-AA
*
20780098 AAAGCAAAA
1 AAA--AGAA
20780107 AAAAGAA
1 AAAAGAA
20780114 AAAAGAA
1 AAAAGAA
20780121 AAGAA-AA
1 AA-AAGAA
*
20780128 GAAAGAA
1 AAAAGAA
20780135 A
1 A
20780136 GGAAAGACTT
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
6 2 0.04
7 43 0.75
8 6 0.11
9 5 0.09
10 1 0.02
ACGTcount: A:0.77, C:0.08, G:0.15, T:0.00
Consensus pattern (7 bp):
AAAAGAA
Found at i:20780129 original size:17 final size:17
Alignment explanation
Indices: 20780090--20780142 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
20780080 GCAAAAAGCA
*
20780090 AAAAGCAAAAAGCAAAA-
1 AAAAGAAAAAAG-AAAAG
20780107 AAAAGAAAAAAGAAAAG
1 AAAAGAAAAAAGAAAAG
*
20780124 AAAAGAAAGAAAGGAAAG
1 AAAAGAAA-AAAGAAAAG
20780142 A
1 A
20780143 CTTTTGAAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
16 4 0.12
17 19 0.59
18 9 0.28
ACGTcount: A:0.77, C:0.04, G:0.19, T:0.00
Consensus pattern (17 bp):
AAAAGAAAAAAGAAAAG
Found at i:20783275 original size:22 final size:22
Alignment explanation
Indices: 20783250--20783320 Score: 81
Period size: 22 Copynumber: 3.2 Consensus size: 22
20783240 ACTAAAGTTT
*
20783250 TTTGAATAAGAATCTTTGAAAA
1 TTTGAATGAGAATCTTTGAAAA
*
20783272 TTTGAATGTGAATCTTT-AAAA
1 TTTGAATGAGAATCTTTGAAAA
* *
20783293 TTTTTGAATGAGAACCTTTGAAAT
1 --TTTGAATGAGAATCTTTGAAAA
20783317 TTTG
1 TTTG
20783321 GAAGTGAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
21 4 0.10
22 19 0.46
23 15 0.37
24 3 0.07
ACGTcount: A:0.37, C:0.06, G:0.15, T:0.42
Consensus pattern (22 bp):
TTTGAATGAGAATCTTTGAAAA
Found at i:20783302 original size:23 final size:23
Alignment explanation
Indices: 20783248--20783365 Score: 98
Period size: 23 Copynumber: 5.2 Consensus size: 23
20783238 TCACTAAAGT
*
20783248 TTTTTGAATAAGAATCTTTGAAAA
1 TTTTTGAATGAGAATCTTT-AAAA
*
20783272 --TTTGAATGTGAATCTTTAAAA
1 TTTTTGAATGAGAATCTTTAAAA
* *
20783293 TTTTTGAATGAGAACCTTTGAAA
1 TTTTTGAATGAGAATCTTTAAAA
* * *
20783316 TTTTGGAA-GTGAATTTTTAAAA
1 TTTTTGAATGAGAATCTTTAAAA
* * * *
20783338 TTTTTTAAAAGAGAATTTTTGAAA
1 -TTTTTGAATGAGAATCTTTAAAA
20783362 TTTT
1 TTTT
20783366 AGATGTAAAT
Statistics
Matches: 76, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
21 4 0.05
22 25 0.33
23 35 0.46
24 12 0.16
ACGTcount: A:0.37, C:0.03, G:0.14, T:0.45
Consensus pattern (23 bp):
TTTTTGAATGAGAATCTTTAAAA
Found at i:20783312 original size:45 final size:45
Alignment explanation
Indices: 20783248--20783764 Score: 256
Period size: 45 Copynumber: 11.5 Consensus size: 45
20783238 TCACTAAAGT
* *
20783248 TTTTTGAATAAGAATCTTTGAAAATTTGAATGTGAATCTTTAAAA
1 TTTTTGAATGAGAATCTTTGAAAATTTGAATGTGAATCTCTAAAA
* * * *
20783293 TTTTTGAATGAGAACCTTTGAAATTTTGGAA-GTGAATTTTTAAAA
1 TTTTTGAATGAGAATCTTTGAAAATTT-GAATGTGAATCTCTAAAA
* * * * * *
20783338 TTTTTTAAAAGAGAATTTTTG-AAATTTTAGATGTAAATGC-CT-AAG
1 -TTTTTGAATGAGAATCTTTGAAAATTTGA-ATGTGAAT-CTCTAAAA
* * * * * * *
20783383 TTTTTCAAATGAAAATC-TTCAACA-TTCAA-GCAT-AATCACTAAACT
1 TTTTT-GAATGAGAATCTTTGAAAATTTGAATG--TGAATCTCTAAA-A
* * * * * *
20783428 TTTTTGAATGAGAATTTTTGAAATTTTGGATATGAAATC-ATAAAG
1 TTTTTGAATGAGAATCTTTGAAAATTTGAATGTG-AATCTCTAAAA
* * * * * *
20783473 TTTTTGAATGAGAA-CATTTGAAATTTTGGATGTAAAGCACTAAAGC
1 TTTTTGAATGAGAATC-TTTGAAAATTTGAATGTGAATCTCTAAA-A
** * * * * *
20783519 TTTTCAAATGTGAATCTTT--AAATTTTAGATGCGAAACCCTAAAA
1 TTTTTGAATGAGAATCTTTGAAAATTTGA-ATGTGAATCTCTAAAA
* * * * * *
20783563 TTTTTCAGATGAGAATCTATGAAATTTTGATTGTGAAATAT-TAAAG
1 TTTTTGA-ATGAGAATCTTTGAAAATTTGAATGTG-AATCTCTAAAA
* * * *
20783609 TTTTTTAATGATAATTTTTGAAAATTTGGATGTGAATCTCTAAAA
1 TTTTTGAATGAGAATCTTTGAAAATTTGAATGTGAATCTCTAAAA
* * *
20783654 TTTTTTGAATGTGAATCTTTGAAAAGTT-AATGTGAATC-CTTAAAT
1 -TTTTTGAATGAGAATCTTTGAAAATTTGAATGTGAATCTC-TAAAA
* ** *
20783699 TTTTTGAATGAAAATCTTT-AACTTTTGAATGTGAATTTCTAAAA
1 TTTTTGAATGAGAATCTTTGAAAATTTGAATGTGAATCTCTAAAA
** *
20783743 TTTTCAAATAAGAATCTTTGAA
1 TTTTTGAATGAGAATCTTTGAA
20783765 TTCTGGATGT
Statistics
Matches: 352, Mismatches: 88, Indels: 64
0.70 0.17 0.13
Matches are distributed among these distances:
42 2 0.01
43 10 0.03
44 85 0.24
45 161 0.46
46 81 0.23
47 13 0.04
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.41
Consensus pattern (45 bp):
TTTTTGAATGAGAATCTTTGAAAATTTGAATGTGAATCTCTAAAA
Found at i:20783338 original size:22 final size:23
Alignment explanation
Indices: 20783259--20783341 Score: 91
Period size: 22 Copynumber: 3.7 Consensus size: 23
20783249 TTTTGAATAA
20783259 GAATCTTTGAAAA-TTT-GAATGT
1 GAATCTTT-AAAATTTTGGAATGT
* *
20783281 GAATCTTTAAAATTTTTGAATGA
1 GAATCTTTAAAATTTTGGAATGT
* *
20783304 GAACCTTTGAAATTTTGGAA-GT
1 GAATCTTTAAAATTTTGGAATGT
*
20783326 GAATTTTTAAAATTTT
1 GAATCTTTAAAATTTT
20783342 TTAAAAGAGA
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
21 4 0.08
22 25 0.49
23 22 0.43
ACGTcount: A:0.36, C:0.05, G:0.16, T:0.43
Consensus pattern (23 bp):
GAATCTTTAAAATTTTGGAATGT
Found at i:20783499 original size:23 final size:23
Alignment explanation
Indices: 20783428--20783499 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 23
20783418 TCACTAAACT
**
20783428 TTTTTGAATGAGAATTTTTGAAA
1 TTTTTGAATGAGAACATTTGAAA
*
20783451 TTTTGGATATGA-AATCA--T-AAA
1 TTTTTGA-ATGAGAA-CATTTGAAA
20783472 GTTTTTGAATGAGAACATTTGAAA
1 -TTTTTGAATGAGAACATTTGAAA
20783496 TTTT
1 TTTT
20783500 GGATGTAAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
21 9 0.24
22 9 0.24
23 13 0.34
24 7 0.18
ACGTcount: A:0.36, C:0.03, G:0.17, T:0.44
Consensus pattern (23 bp):
TTTTTGAATGAGAACATTTGAAA
Found at i:20783569 original size:180 final size:181
Alignment explanation
Indices: 20783228--20783580 Score: 417
Period size: 180 Copynumber: 2.0 Consensus size: 181
20783218 AACGTTATAG
* * *
20783228 CAAGACATAATCACTAAAGTTTTTTGAATAAGAATCTTTGAAAATTTGAATGTGAATCTTTAAAA
1 CAAGACATAATCACTAAACTTTTTTGAATAAGAATCTTTGAAAATTTGAATATGAATCTATAAAA
* * **** * * *
20783293 TTTTTGAATGAGAACCTTTGAAATTTTGGAAGTGAATTTTTAAAATTTTTTAAAAGAGAATTTTT
66 TTTTTGAATGAGAACATTTGAAATTTTGGAAGTAAAGCACTAAAACTTTTCAAAAGAGAATCTTT
* * *
20783358 GAAATTTTAGATGTAAATGCCTAAGTTTTTCAAATGAAAATCTTCAACATT
131 GAAATTTTAGATGGAAATCCCTAAATTTTTCAAATGAAAATCTTCAACATT
* * * *
20783409 CAAG-CATAATCACTAAACTTTTTTGAATGAGAATTTTTGAAATTTTGGATATGAAATC-ATAAA
1 CAAGACATAATCACTAAACTTTTTTGAATAAGAATCTTTGAAAATTTGAATATG-AATCTATAAA
* * * * *
20783472 GTTTTTGAATGAGAACATTTGAAATTTTGGATGTAAAGCACTAAAGCTTTTCAAATGTGAATCTT
65 ATTTTTGAATGAGAACATTTGAAATTTTGGAAGTAAAGCACTAAAACTTTTCAAAAGAGAATCTT
* *
20783537 T-AAATTTTAGATGCGAAA-CCCTAAAATTTTTCAGATGAGAATCT
130 TGAAATTTTAGATG-GAAATCCCT-AAATTTTTCAAATGAAAATCT
20783581 ATGAAATTTT
Statistics
Matches: 143, Mismatches: 26, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
179 15 0.10
180 120 0.84
181 8 0.06
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.38
Consensus pattern (181 bp):
CAAGACATAATCACTAAACTTTTTTGAATAAGAATCTTTGAAAATTTGAATATGAATCTATAAAA
TTTTTGAATGAGAACATTTGAAATTTTGGAAGTAAAGCACTAAAACTTTTCAAAAGAGAATCTTT
GAAATTTTAGATGGAAATCCCTAAATTTTTCAAATGAAAATCTTCAACATT
Found at i:20783652 original size:91 final size:90
Alignment explanation
Indices: 20783240--20783764 Score: 310
Period size: 91 Copynumber: 5.8 Consensus size: 90
20783230 AGACATAATC
* * * * * *
20783240 ACTAAAGTTTTTTGAATAAGAATCTTTGAAAATTTGAATGTGAATCTTTAAAATTTTTGAATGAG
1 ACTAAAGTTTTTTGAATGAGAATTTTTGAAATTTTGGATGTGAATC-CTAAAATTTTTCAATGAG
* *
20783305 AACCTTTGAAATTTTGGAAGTGAATT
65 AATCTTTGAAATTTTGGAAGTGAAAT
** * * * * * *
20783331 TTTAAAATTTTTTAAAAGAGAATTTTTGAAATTTTAGATGTAAATGCCT-AAGTTTTTCAAATGA
1 ACTAAAGTTTTTTGAATGAGAATTTTTGAAATTTTGGATGTGAAT-CCTAAAATTTTTC-AATGA
* * * *
20783395 AAATC-TTCAACA--TT-CAAG-CATAAT
64 GAATCTTTGAA-ATTTTGGAAGTGA-AAT
* * * * *
20783419 CACTAAACTTTTTTGAATGAGAATTTTTGAAATTTTGGATATGAAATCATAAAGTTTTTGAATGA
1 -ACTAAAGTTTTTTGAATGAGAATTTTTGAAATTTTGGATGTG-AATCCTAAAATTTTTCAATGA
* *
20783484 GAA-CATTTGAAATTTTGGATGT-AAAGC
64 GAATC-TTTGAAATTTTGGAAGTGAAA-T
* ** * * * * *
20783511 ACTAAAGCTTTTCAAATGTGAATCTTT-AAATTTTAGATGCGAAACCCTAAAATTTTTCAGATGA
1 ACTAAAGTTTTTTGAATGAGAATTTTTGAAATTTTGGATGTG-AATCCTAAAATTTTTCA-ATGA
* *
20783575 GAATCTATGAAATTTT-GATTGTGAAAT
64 GAATCTTTGAAATTTTGGA-AGTGAAAT
* * * * *
20783602 ATTAAAGTTTTTT-AATGATAATTTTTGAAAATTTGGATGTGAATCTCTAAAATTTTTTGAATGT
1 ACTAAAGTTTTTTGAATGAGAATTTTTGAAATTTTGGATGTGAATC-CTAAAA-TTTTTCAATGA
**
20783666 GAATCTTTGAAAAGTT--AATGTG-AAT
64 GAATCTTTGAAATTTTGGAA-GTGAAAT
* * * * * * *
20783691 CCTTAAA-TTTTTTGAATGAAAATCTTT-AACTTTTGAATGTGAATTTCTAAAA-TTTTCAAATA
1 AC-TAAAGTTTTTTGAATGAGAATTTTTGAAATTTTGGATGTGAA-TCCTAAAATTTTTC-AATG
20783753 AGAATCTTTGAA
63 AGAATCTTTGAA
20783765 TTCTGGATGT
Statistics
Matches: 331, Mismatches: 77, Indels: 55
0.71 0.17 0.12
Matches are distributed among these distances:
87 5 0.02
88 20 0.06
89 74 0.22
90 86 0.26
91 132 0.40
92 14 0.04
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.41
Consensus pattern (90 bp):
ACTAAAGTTTTTTGAATGAGAATTTTTGAAATTTTGGATGTGAATCCTAAAATTTTTCAATGAGA
ATCTTTGAAATTTTGGAAGTGAAAT
Found at i:20783701 original size:44 final size:45
Alignment explanation
Indices: 20783603--20783746 Score: 134
Period size: 44 Copynumber: 3.2 Consensus size: 45
20783593 TTGTGAAATA
* * *
20783603 TTAAAGTTTTTT-AATGATAATTTTTGAAAATTTGGATGTGAATCTC
1 TTAAA-TTTTTTGAATG-TAATCTTTGAAAAGTTGAATGTGAATCTC
*
20783649 TAAAATTTTTTGAATGTGAATCTTTGAAAAGTT-AATGTGAATC-C
1 TTAAATTTTTTGAATGT-AATCTTTGAAAAGTTGAATGTGAATCTC
* *** *
20783693 TTAAATTTTTTGAATGAAAATCTTT-AACTTTTGAATGTGAATTTC
1 TTAAATTTTTTGAATG-TAATCTTTGAAAAGTTGAATGTGAATCTC
*
20783738 TAAAATTTT
1 TTAAATTTT
20783747 CAAATAAGAA
Statistics
Matches: 82, Mismatches: 11, Indels: 11
0.79 0.11 0.11
Matches are distributed among these distances:
43 4 0.05
44 32 0.39
45 25 0.30
46 21 0.26
ACGTcount: A:0.35, C:0.06, G:0.13, T:0.47
Consensus pattern (45 bp):
TTAAATTTTTTGAATGTAATCTTTGAAAAGTTGAATGTGAATCTC
Found at i:20784068 original size:17 final size:17
Alignment explanation
Indices: 20784016--20784059 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
20784006 AAATATGAAA
*
20784016 TTCTTATGAAATTAAAT
1 TTCTTATGAAATTAAAG
* *
20784033 TTCTTTTGAATTTAAAG
1 TTCTTATGAAATTAAAG
20784050 TTCTTATGAA
1 TTCTTATGAA
20784060 CCTAAAGTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.34, C:0.07, G:0.09, T:0.50
Consensus pattern (17 bp):
TTCTTATGAAATTAAAG
Found at i:20784122 original size:17 final size:17
Alignment explanation
Indices: 20784102--20784264 Score: 110
Period size: 17 Copynumber: 9.6 Consensus size: 17
20784092 AAACTAAAAC
*
20784102 TCTTACGAATATGAAGT
1 TCTTACGAATCTGAAGT
* *
20784119 TCTTATGAACCTGAAGT
1 TCTTACGAATCTGAAGT
* * *
20784136 TGTTGCGAATTTGAAGT
1 TCTTACGAATCTGAAGT
* * * **
20784153 TCTAATGAATCTAAAAA
1 TCTTACGAATCTGAAGT
*
20784170 TATTACGAATCTGAAGT
1 TCTTACGAATCTGAAGT
* * * **
20784187 TCTTATGAATATAAAAA
1 TCTTACGAATCTGAAGT
** **
20784204 TCTTGTGAATCTGAAAC
1 TCTTACGAATCTGAAGT
*
20784221 TCTTACGAATTTGAAGT
1 TCTTACGAATCTGAAGT
* *
20784238 TCTTACAAACCTGAAGT
1 TCTTACGAATCTGAAGT
20784255 TCTTACGAAT
1 TCTTACGAAT
20784265 TTAAAAATCT
Statistics
Matches: 104, Mismatches: 42, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
17 104 1.00
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (17 bp):
TCTTACGAATCTGAAGT
Found at i:20784276 original size:34 final size:34
Alignment explanation
Indices: 20784087--20784281 Score: 138
Period size: 34 Copynumber: 5.7 Consensus size: 34
20784077 TCTTTTATTT
** * *
20784087 TTACGAAACTAAAACTCTTACGAATATGAAGTTC
1 TTACGAATTTAAAAATCTTACGAATCTGAAGTTC
* ** * ** * * *
20784121 TTATGAACCTGAAGTTGTTGCGAATTTGAAGTTC
1 TTACGAATTTAAAAATCTTACGAATCTGAAGTTC
* * * *
20784155 TAATGAATCTAAAAATATTACGAATCTGAAGTTC
1 TTACGAATTTAAAAATCTTACGAATCTGAAGTTC
* * ** **
20784189 TTATGAATATAAAAATCTTGTGAATCTGAAACTC
1 TTACGAATTTAAAAATCTTACGAATCTGAAGTTC
* ** * *
20784223 TTACGAATTTGAAGTTCTTACAAACCTGAAGTTC
1 TTACGAATTTAAAAATCTTACGAATCTGAAGTTC
20784257 TTACGAATTTAAAAATCTTACGAAT
1 TTACGAATTTAAAAATCTTACGAAT
20784282 TTTTCATTCT
Statistics
Matches: 122, Mismatches: 39, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
34 122 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (34 bp):
TTACGAATTTAAAAATCTTACGAATCTGAAGTTC
Found at i:20784750 original size:6 final size:6
Alignment explanation
Indices: 20784741--20784775 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
20784731 AAGTAAAAAA
* *
20784741 ATTTTG ATTTTG ATTTTA ATTTTA ATTTTG ATTTT
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTT
20784776 TTTGTTTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.23, C:0.00, G:0.09, T:0.69
Consensus pattern (6 bp):
ATTTTG
Found at i:20784763 original size:18 final size:18
Alignment explanation
Indices: 20784740--20784775 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
20784730 AAAGTAAAAA
*
20784740 AATTTTGATTTTGATTTT
1 AATTTTAATTTTGATTTT
20784758 AATTTTAATTTTGATTTT
1 AATTTTAATTTTGATTTT
20784776 TTTGTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.00, G:0.08, T:0.67
Consensus pattern (18 bp):
AATTTTAATTTTGATTTT
Found at i:20785888 original size:21 final size:22
Alignment explanation
Indices: 20785849--20785901 Score: 90
Period size: 21 Copynumber: 2.5 Consensus size: 22
20785839 ACCGAAATTA
*
20785849 ATAAAATATTATTTTTTTAAAT
1 ATAAAATATTATATTTTTAAAT
20785871 ATAAAATATTA-ATTTTTAAAT
1 ATAAAATATTATATTTTTAAAT
20785892 ATAAAATATT
1 ATAAAATATT
20785902 TAAAAATATC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 19 0.63
22 11 0.37
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
ATAAAATATTATATTTTTAAAT
Found at i:20785955 original size:13 final size:13
Alignment explanation
Indices: 20785937--20785963 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
20785927 ATAATTAAAA
20785937 AATTAAAAAAATT
1 AATTAAAAAAATT
20785950 AATTAAAAAAATT
1 AATTAAAAAAATT
20785963 A
1 A
20785964 TTTATATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
AATTAAAAAAATT
Found at i:20786061 original size:11 final size:11
Alignment explanation
Indices: 20786045--20786069 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
20786035 CTTCATCCTA
20786045 CCCGACCCGAC
1 CCCGACCCGAC
20786056 CCCGACCCGAC
1 CCCGACCCGAC
20786067 CCC
1 CCC
20786070 CGATTTTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.68, G:0.16, T:0.00
Consensus pattern (11 bp):
CCCGACCCGAC
Found at i:20786570 original size:101 final size:96
Alignment explanation
Indices: 20786279--20786563 Score: 247
Period size: 101 Copynumber: 2.9 Consensus size: 96
20786269 TTGAAATTAT
* *
20786279 ATCTTACCAAATTATTGGAGGATTTAAATCTTGAATTATGAATTCTATCAAACTATTAAAGAATT
1 ATCTTACCAAATTATT-GAGGATTTAAATTTTAAATTA--AATT-TATCAAACTATTAAAGAATT
* ** *
20786344 TCATAATTTTTT-TGATAAA--ATAAAATTTTTTA
62 TAATAATTTTTTAAAATAAATTATAAAATTCTTTA
* * * * * * * *
20786376 ATCCTAACAAATTATTGAAAGATTTTAATTTTAAATTAAGTTTTACCAAATTATTAGAGAATTTA
1 ATCTTACCAAATTATTG-AGGATTTAAATTTTAAATTAA-ATTTATCAAACTATTAAAGAATTTA
* *
20786441 ATAAATTTTTTACAAAAACTAATAATAAAA-TCTTTA
64 AT-AATTTTTTA-AAATA--AATTATAAAATTCTTTA
*
20786477 ATCTTACCAAACTATTAGAGGATTTAAATTTTAAATTAAATCTTATCAAACTATTGAAAG-ATTT
1 ATCTTACCAAATTATT-GAGGATTTAAATTTTAAATTAAAT-TTATCAAACTATT-AAAGAATTT
20786541 AATAAGTTTTCTTAAAATAAATT
63 AATAA-TTTT-TTAAAATAAATT
20786564 TTATAAATAA
Statistics
Matches: 148, Mismatches: 26, Indels: 26
0.74 0.13 0.13
Matches are distributed among these distances:
95 21 0.14
96 11 0.07
97 30 0.20
98 2 0.01
99 3 0.02
100 5 0.03
101 63 0.43
102 13 0.09
ACGTcount: A:0.44, C:0.08, G:0.07, T:0.41
Consensus pattern (96 bp):
ATCTTACCAAATTATTGAGGATTTAAATTTTAAATTAAATTTATCAAACTATTAAAGAATTTAAT
AATTTTTTAAAATAAATTATAAAATTCTTTA
Found at i:20788350 original size:31 final size:30
Alignment explanation
Indices: 20788284--20788351 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 30
20788274 TCTTCAATTC
* * *
20788284 TTTATTTTTTATTTTAATTATGATATGATT
1 TTTATTTTTTATTTTAAGTATAAAATGATT
*
20788314 TTTATTTTTTATGTTTTAGTATAAAAT-ATT
1 TTTATTTTTTAT-TTTAAGTATAAAATGATT
20788344 TCTTATTT
1 T-TTATTT
20788352 CAAGTGTTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
30 16 0.50
31 16 0.50
ACGTcount: A:0.26, C:0.01, G:0.06, T:0.66
Consensus pattern (30 bp):
TTTATTTTTTATTTTAAGTATAAAATGATT
Found at i:20791567 original size:2 final size:2
Alignment explanation
Indices: 20791560--20791602 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
20791550 TTCTCTGCTC
* *
20791560 TA TA TA TA TA AA TA TA TA TA TA TG TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
20791602 T
1 T
20791603 TTTGCGTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:20796534 original size:30 final size:30
Alignment explanation
Indices: 20796422--20796534 Score: 97
Period size: 30 Copynumber: 3.8 Consensus size: 30
20796412 ATTGATTTAT
* * *
20796422 ATTAAGAACTTATTTAATTACAAATTAAAA
1 ATTAAGTATTTATTTAAGTACAAATTAAAA
* **
20796452 GTTAAGGGTTTATTTGAA-TA-AAATTAAAA
1 ATTAAGTATTTATTT-AAGTACAAATTAAAA
* * *
20796481 ATTAA-TAACTTATTTAGGAACAAATTAAAA
1 ATTAAGT-ATTTATTTAAGTACAAATTAAAA
*
20796511 ATCAAGTATTTATTTAAGTACAAA
1 ATTAAGTATTTATTTAAGTACAAA
20796535 AAAAATATAA
Statistics
Matches: 64, Mismatches: 14, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
28 1 0.02
29 20 0.31
30 40 0.62
31 3 0.05
ACGTcount: A:0.50, C:0.05, G:0.09, T:0.36
Consensus pattern (30 bp):
ATTAAGTATTTATTTAAGTACAAATTAAAA
Found at i:20797048 original size:27 final size:28
Alignment explanation
Indices: 20797018--20797070 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
20797008 TGAAATTAAA
* * *
20797018 TTATGTTAAATATAA-AATTAATTTTGT
1 TTATGATAAAAATAATAATAAATTTTGT
20797045 TTATGATAAAAATAATAATAAATTTT
1 TTATGATAAAAATAATAATAAATTTT
20797071 TATTAATTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 13 0.59
28 9 0.41
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (28 bp):
TTATGATAAAAATAATAATAAATTTTGT
Found at i:20797811 original size:24 final size:24
Alignment explanation
Indices: 20797779--20797828 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
20797769 ATTTAAGTAG
*
20797779 TGTCCAAACAAATAACGTCAAACC
1 TGTCCAAACAAATAACGCCAAACC
20797803 TGTCCAAACAAATAACGCCAAACC
1 TGTCCAAACAAATAACGCCAAACC
20797827 TG
1 TG
20797829 CTATAGACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.44, C:0.30, G:0.10, T:0.16
Consensus pattern (24 bp):
TGTCCAAACAAATAACGCCAAACC
Found at i:20801130 original size:30 final size:30
Alignment explanation
Indices: 20801072--20801135 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 30
20801062 ATTAATGAAC
*
20801072 AAAACTAAAAGTAATGTATATTTCAAAA-T
1 AAAACTAAAAGTAATGTATATTTAAAAATT
* *
20801101 AAAACTAAAAGTAGTTGTATTTTTAAAAATT
1 AAAACTAAAAGTA-ATGTATATTTAAAAATT
20801132 AAAA
1 AAAA
20801136 ATAATTATCA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 13 0.43
30 12 0.40
31 5 0.17
ACGTcount: A:0.55, C:0.05, G:0.08, T:0.33
Consensus pattern (30 bp):
AAAACTAAAAGTAATGTATATTTAAAAATT
Found at i:20812428 original size:748 final size:745
Alignment explanation
Indices: 20810444--20812651 Score: 3576
Period size: 747 Copynumber: 3.0 Consensus size: 745
20810434 TGCACTTAAA
*
20810444 ATTAATAAATATTAAGAGATATAATATTATCTCAAATCCACTTATGTAATTATTTTTAAAAAAAT
1 ATTAATAAATATTAAGAGATATAATATTATGTCAAATCCACTTATGTAATTATTTTTAAAAAAAT
* * *
20810509 ATTATTCATCTCACCAATGTTATTATTTTAAACATTTGTACTCCCGGACATGATAAAAATTATTT
66 ATTATTCGTCTCACCATTGTTATTATTTTAAACATTTGTACTCCCGGACTTGATAAAAATTATTT
* * **
20810574 ATATAAACTCCACAAATTACCTAAAGAATAATTTCTCTAGATAAGAATTCAAAAGAAAAAAACTG
131 ATAGAAACTCCACAAATTACCTAAAGAATAATTTCTCTTGATAAGAATTCAAAAGAAAAAAAAAG
20810639 AAAGTAAATTATGAAAAATAATAATTAAACTCAAAATAAAATCAAGCATGTTGTTTAGATGCATT
196 AAAGTAAATTATGAAAAATAATAATTAAACTCAAAATAAAATCAAGCATGTTGTTTAGATGCATT
* * * * * *
20810704 TCAAACGGCCCAACAAATATCTTTGATTGAGATTGTATTGCAACCGTAGAAAGTTATCGTGAACT
261 TCATACGGCCCAATAAATATCTTTGATTGAGATTATATTGCAACAGTAGAAAATTATCGTGAACC
* * *
20810769 ATTGACATATAATAATTTTTATCCCCCACCAATATAAAATTAATAGGAAACACACACTGTCACAC
326 ATTGACATATAATAATTTTTATCCCCCACCAATATAAGATTAATAGGAAACTCACATTGTCACAC
20810834 TTTGTAGGACTTGCAACTGAATC-----------T-A-AAGGGTATTCTAGCCGTTAGCATATAT
391 TTTGTAGGACTTGCAACTGAATCTAAAGTATATATCACAAGGGTATTCTAGCCGTTAGCATATAT
* * *
20810886 GATAAATATTTAAAGATCACAAGATTTAATAAAATTTGTTCAAGTTAATTACATTAATTGTTTTT
456 GATAAATATTTAAAGATCACAAGATTTGACAAAATTTGTTCAAGTTAATCACATTAATTGTTTTT
20810951 TTCATGAGGCAAGTAAAAAAAATTGTCCCCCAGTTAAATAAAAATGTTGGATCAATGTTTGATTA
521 TTCATGAGGCAAGTAAAAAAAATTGTCCCCCAGTTAAATAAAAATGTTGGATCAATGTTTGATTA
* * *
20811016 AATCTCTGCCTTATATTCTACCGCTCT-AAAGGATGCTGGCATTACATATGTTGAGACAAACTGA
586 AATCTCTGCCTTATATTCTATCACTCTCAAA-GATGCTGGCATTAAATATGTTGAGACAAACTGA
* * *
20811080 TCAGCCATGAATTATATAGAGGGTGTGTGTGGATGCATGCTCTAGTTTGGCATTAAATATGGAGA
650 TCAGCCATGAATTTTAT-GAGGGTGTGTGTGGATGCATGCTCTTGTCTGGCATTAAATATGGAGA
*
20811145 CAAAAAATATCAGTCTTCACTTTTATAAAGAT
714 CAAAAAATATCAGTCCTCACTTTTATAAAGAT
20811177 ATTAATAAATATTAAGAGATATAATATTATGTCAAATCCACTTATGTAATTATTTTTAAAAAAAT
1 ATTAATAAATATTAAGAGATATAATATTATGTCAAATCCACTTATGTAATTATTTTTAAAAAAAT
* *
20811242 ATTATTTGTCTCATCATTGTTATTATTTTAAACATTTGTACTCCCGGACTTGATAAAAATTATTT
66 ATTATTCGTCTCACCATTGTTATTATTTTAAACATTTGTACTCCCGGACTTGATAAAAATTATTT
20811307 ATAGAAACTCCACAAATTACCTAAAGAATAATTTCTCTTGATAAGAATTCAAAAG-AAAAAAAAG
131 ATAGAAACTCCACAAATTACCTAAAGAATAATTTCTCTTGATAAGAATTCAAAAGAAAAAAAAAG
20811371 AAAGTAAATTATGAAAAATAATAATTAAACTCAAAATAAAATCAAGCATGTTGTTTAGATGCATT
196 AAAGTAAATTATGAAAAATAATAATTAAACTCAAAATAAAATCAAGCATGTTGTTTAGATGCATT
20811436 TCATACGGCCCAATAAATATCTTTGATTGAGATTATATTGCAACAGTAGAAAATTATCGTGAACC
261 TCATACGGCCCAATAAATATCTTTGATTGAGATTATATTGCAACAGTAGAAAATTATCGTGAACC
*
20811501 ATTGACATATAATAATTTTTCTCCCCCACCAATATAAGATTAATAGGAAACTCACATTGTCACAC
326 ATTGACATATAATAATTTTTATCCCCCACCAATATAAGATTAATAGGAAACTCACATTGTCACAC
*
20811566 TTTGTAGGACTTGCAACAGAATCTAAAGGGTATATATCACAAGGGTATTCTAGCCGTTAGCATAT
391 TTTGTAGGACTTGCAACTGAATCTAAA--GTATATATCACAAGGGTATTCTAGCCGTTAGCATAT
* *
20811631 ATGATAAATATTTAAAGATCACAAGATTTGACAAAATTTATTGAAGTTAATCACATTAATTGTTT
454 ATGATAAATATTTAAAGATCACAAGATTTGACAAAATTTGTTCAAGTTAATCACATTAATTGTTT
*
20811696 TTTTCATGAGGCAAGTAAAAAAAAGTGTCCCCCAGTTAAATAAAAATGTTGGATCAATGTTTGAT
519 TTTTCATGAGGCAAGTAAAAAAAATTGTCCCCCAGTTAAATAAAAATGTTGGATCAATGTTTGAT
20811761 TAAATCTCTGCCTTATATTCTATCACTCTCAAAGATGCTGGCATTAAATATGTTGAGACAAACTG
584 TAAATCTCTGCCTTATATTCTATCACTCTCAAAGATGCTGGCATTAAATATGTTGAGACAAACTG
20811826 ATCAGCCATGAATTTTATGGAGGGTGTGTGTGGATGCATGCTCTTGTCTGGCATTAAATATGGAG
649 ATCAGCCATGAATTTTAT-GAGGGTGTGTGTGGATGCATGCTCTTGTCTGGCATTAAATATGGAG
20811891 ACAAAAAATATCAGTCCTCACTTTTATAAAGAT
713 ACAAAAAATATCAGTCCTCACTTTTATAAAGAT
* *
20811924 ATTAATAAATATTAAGAGATATAATATTATGTCAAATCCACTTATGTAATTTTTTTTAAGAAAAT
1 ATTAATAAATATTAAGAGATATAATATTATGTCAAATCCACTTATGTAATTATTTTTAAAAAAAT
*
20811989 ATTATTCGTCTCACCATTGTTATTACTTTAAACATTTGTACTCCCGGACTTGATAAAAATTATTT
66 ATTATTCGTCTCACCATTGTTATTATTTTAAACATTTGTACTCCCGGACTTGATAAAAATTATTT
20812054 ATAGAAACTCCACAAATTACCTAAAGAATAATTTCTCTTGATAAGAATTCAAAAGAAAAAAAAAG
131 ATAGAAACTCCACAAATTACCTAAAGAATAATTTCTCTTGATAAGAATTCAAAAGAAAAAAAAAG
* * * * * *
20812119 AAAGTAAATTATTAAAAGTAATAATTAATCTCAAAACAAAATCAAACATGTTGTTTAGATGCGTT
196 AAAGTAAATTATGAAAAATAATAATTAAACTCAAAATAAAATCAAGCATGTTGTTTAGATGCATT
*
20812184 TCGTACGGCCCAATAAATATCTTTGATTGAGATTATATTGCAACAGTAGAAAATTATCGTGAACC
261 TCATACGGCCCAATAAATATCTTTGATTGAGATTATATTGCAACAGTAGAAAATTATCGTGAACC
20812249 ATTGACATATAATAATTTTTATCCCCCACCAATATAAGATTAATAGGAAACTCACATTGTCACAC
326 ATTGACATATAATAATTTTTATCCCCCACCAATATAAGATTAATAGGAAACTCACATTGTCACAC
* * *
20812314 TTTGTAAGACTTACAACTGAATCTAAATGTTATATATCACAAGGGTATTCGAGCCGTTAGCATAT
391 TTTGTAGGACTTGCAACTGAATCTAAA-G-TATATATCACAAGGGTATTCTAGCCGTTAGCATAT
20812379 ATGATAAATATTTAATA-ATCACAATG-TTTGACAAAATTTGTTCAAGTTAATCACATTAATTG-
454 ATGATAAATATTTAA-AGATCACAA-GATTTGACAAAATTTGTTCAAGTTAATCACATTAATTGT
* * * *
20812441 TTTTTTCATGTGGCAAGTAAAAAAAATTGTCCCCTAATTAAATAAAAATGTTGGATCAATGTTTA
517 TTTTTTCATGAGGCAAGTAAAAAAAATTGTCCCCCAGTTAAATAAAAATGTTGGATCAATGTTTG
* * * * * * *
20812506 ATTAAATCTCTACCTTATATCCTATCACTCTCAAAGATACTGACAATAAATATATTGAGCCAAAC
582 ATTAAATCTCTGCCTTATATTCTATCACTCTCAAAGATGCTGGCATTAAATATGTTGAGACAAAC
* *
20812571 TGATCAGTCACGAA-TTT-T-A---------TGGATGCATGCTCTTGTCTGGCATTAAATATGGA
647 TGATCAGCCATGAATTTTATGAGGGTGTGTGTGGATGCATGCTCTTGTCTGGCATTAAATATGGA
*
20812624 GACAAAAAATATCAATCCTCACTTTTAT
712 GACAAAAAATATCAGTCCTCACTTTTAT
20812652 GAAGGCTGTG
Statistics
Matches: 1385, Mismatches: 70, Indels: 39
0.93 0.05 0.03
Matches are distributed among these distances:
732 214 0.15
733 177 0.13
734 61 0.04
743 1 0.00
745 2 0.00
746 4 0.00
747 611 0.44
748 313 0.23
749 2 0.00
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (745 bp):
ATTAATAAATATTAAGAGATATAATATTATGTCAAATCCACTTATGTAATTATTTTTAAAAAAAT
ATTATTCGTCTCACCATTGTTATTATTTTAAACATTTGTACTCCCGGACTTGATAAAAATTATTT
ATAGAAACTCCACAAATTACCTAAAGAATAATTTCTCTTGATAAGAATTCAAAAGAAAAAAAAAG
AAAGTAAATTATGAAAAATAATAATTAAACTCAAAATAAAATCAAGCATGTTGTTTAGATGCATT
TCATACGGCCCAATAAATATCTTTGATTGAGATTATATTGCAACAGTAGAAAATTATCGTGAACC
ATTGACATATAATAATTTTTATCCCCCACCAATATAAGATTAATAGGAAACTCACATTGTCACAC
TTTGTAGGACTTGCAACTGAATCTAAAGTATATATCACAAGGGTATTCTAGCCGTTAGCATATAT
GATAAATATTTAAAGATCACAAGATTTGACAAAATTTGTTCAAGTTAATCACATTAATTGTTTTT
TTCATGAGGCAAGTAAAAAAAATTGTCCCCCAGTTAAATAAAAATGTTGGATCAATGTTTGATTA
AATCTCTGCCTTATATTCTATCACTCTCAAAGATGCTGGCATTAAATATGTTGAGACAAACTGAT
CAGCCATGAATTTTATGAGGGTGTGTGTGGATGCATGCTCTTGTCTGGCATTAAATATGGAGACA
AAAAATATCAGTCCTCACTTTTATAAAGAT
Found at i:20813656 original size:25 final size:25
Alignment explanation
Indices: 20813628--20813679 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
20813618 AGACTTGATT
20813628 AATTAAACAATTCCAAAGATAAATG
1 AATTAAACAATTCCAAAGATAAATG
*
20813653 AATTAAATAATTCCAAAGATAAATG
1 AATTAAACAATTCCAAAGATAAATG
20813678 AA
1 AA
20813680 CATGGTCTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.58, C:0.10, G:0.08, T:0.25
Consensus pattern (25 bp):
AATTAAACAATTCCAAAGATAAATG
Found at i:20819539 original size:119 final size:120
Alignment explanation
Indices: 20819320--20819564 Score: 483
Period size: 119 Copynumber: 2.0 Consensus size: 120
20819310 CTTTTTAAAT
20819320 AAATTTTTATATTTTTGTTACATTTAAATTTTTTTATATTTATTCAAATAAATTTTTTTAATCTT
1 AAATTTTTATATTTTTGTTACATTTAAATTTTTTTATATTTATTCAAATAAATTTTTTTAATCTT
20819385 CAAATGAAAAATTGATTTATGTTAAGAATTTATTTAAATATAAATTAAAAGTTAA
66 CAAATGAAAAATTGATTTATGTTAAGAATTTATTTAAATATAAATTAAAAGTTAA
20819440 AAATTTTTATATTTTTGTTACATTTAAATTTTTTTATATTTATTCAAAT-AATTTTTTTAATCTT
1 AAATTTTTATATTTTTGTTACATTTAAATTTTTTTATATTTATTCAAATAAATTTTTTTAATCTT
20819504 CAAATGAAAAATTGATTTATGTTAAGAATTTATTTAAATATAAATTAAAAGTTAA
66 CAAATGAAAAATTGATTTATGTTAAGAATTTATTTAAATATAAATTAAAAGTTAA
20819559 AAATTT
1 AAATTT
20819565 ATTTGATATA
Statistics
Matches: 125, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
119 76 0.61
120 49 0.39
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (120 bp):
AAATTTTTATATTTTTGTTACATTTAAATTTTTTTATATTTATTCAAATAAATTTTTTTAATCTT
CAAATGAAAAATTGATTTATGTTAAGAATTTATTTAAATATAAATTAAAAGTTAA
Found at i:20819558 original size:30 final size:30
Alignment explanation
Indices: 20819524--20819660 Score: 115
Period size: 29 Copynumber: 4.7 Consensus size: 30
20819514 ATTGATTTAT
*
20819524 GTTAAGAATTTATTTAAATATAAATTAAAA
1 GTTAAAAATTTATTTAAATATAAATTAAAA
*
20819554 GTTAAAAATTTATTT-GATATAAATTAAAA
1 GTTAAAAATTTATTTAAATATAAATTAAAA
* * * *
20819583 ATTAAAAA-ATATTTGAATGTAAATT-AAA
1 GTTAAAAATTTATTTAAATATAAATTAAAA
* *
20819611 GGTAAAGGAA-TTATTTAAATGT-AA-TAAAA
1 GTTAAA--AATTTATTTAAATATAAATTAAAA
* *
20819640 ATAAAAAAATTTATTTAAATA
1 GT-TAAAAATTTATTTAAATA
20819661 AATGATAAAA
Statistics
Matches: 87, Mismatches: 14, Indels: 13
0.76 0.12 0.11
Matches are distributed among these distances:
28 15 0.17
29 43 0.49
30 29 0.33
ACGTcount: A:0.55, C:0.00, G:0.08, T:0.37
Consensus pattern (30 bp):
GTTAAAAATTTATTTAAATATAAATTAAAA
Found at i:20820084 original size:11 final size:11
Alignment explanation
Indices: 20820068--20820136 Score: 59
Period size: 12 Copynumber: 5.8 Consensus size: 11
20820058 GAATTAACTG
20820068 ATATTTTAAAT
1 ATATTTTAAAT
20820079 ATATTTTTAAAT
1 ATA-TTTTAAAT
20820091 ATATTATATATAAT
1 ATATT-T-TA-AAT
20820105 ATATATTTAAA-
1 ATAT-TTTAAAT
**
20820116 ATATTCTTATTT
1 ATATT-TTAAAT
20820128 ATATTTTAA
1 ATATTTTAA
20820137 TAATAATAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 14
0.74 0.05 0.22
Matches are distributed among these distances:
10 1 0.02
11 15 0.31
12 19 0.40
13 4 0.08
14 8 0.17
15 1 0.02
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.55
Consensus pattern (11 bp):
ATATTTTAAAT
Found at i:20820130 original size:28 final size:26
Alignment explanation
Indices: 20820072--20820130 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
20820062 TAACTGATAT
*
20820072 TTTA-AATATATTTTTAAATATATTA
1 TTTATAATATATTTTAAAATATATTA
* *
20820097 TATATAATATATATTTAAAATATTCTTA
1 TTTATAATATAT-TTTAAAATA-TATTA
20820125 TTTATA
1 TTTATA
20820131 TTTTAATAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 3 0.11
26 7 0.26
27 8 0.30
28 9 0.33
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (26 bp):
TTTATAATATATTTTAAAATATATTA
Found at i:20820131 original size:37 final size:36
Alignment explanation
Indices: 20820068--20820141 Score: 87
Period size: 37 Copynumber: 2.0 Consensus size: 36
20820058 GAATTAACTG
*
20820068 ATATTTTAAATATATTTTTAAATATATTATATATAAT
1 ATATTTTAAATATATTCTTAAATATATTATA-ATAAT
** *
20820105 ATATATTTAAA-ATATTCTTATTTATATTTTAATAAT
1 ATAT-TTTAAATATATTCTTAAATATATTATAATAAT
20820141 A
1 A
20820142 ATAAATATGA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
36 6 0.19
37 20 0.62
38 6 0.19
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.54
Consensus pattern (36 bp):
ATATTTTAAATATATTCTTAAATATATTATAATAAT
Found at i:20820328 original size:19 final size:18
Alignment explanation
Indices: 20820298--20820354 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 18
20820288 ATTAATTTTT
20820298 AAGTAAAAAAAAAAGAAGAA
1 AAGT-AAAAAAAAA-AAGAA
* *
20820318 AAGT--CAAAAAAATGAA
1 AAGTAAAAAAAAAAAGAA
20820334 AAGTAAAAAAAAAAAAGAA
1 AAGT-AAAAAAAAAAAGAA
20820353 AA
1 AA
20820355 AGCAAGAAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
16 8 0.27
17 6 0.20
19 12 0.40
20 4 0.13
ACGTcount: A:0.79, C:0.02, G:0.12, T:0.07
Consensus pattern (18 bp):
AAGTAAAAAAAAAAAGAA
Found at i:20820341 original size:15 final size:16
Alignment explanation
Indices: 20820315--20820344 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
20820305 AAAAAAAGAA
20820315 GAAAAGTCAAAAAAAT
1 GAAAAGTCAAAAAAAT
20820331 GAAAAGT-AAAAAAA
1 GAAAAGTCAAAAAAA
20820345 AAAAAGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.73, C:0.03, G:0.13, T:0.10
Consensus pattern (16 bp):
GAAAAGTCAAAAAAAT
Found at i:20820345 original size:16 final size:16
Alignment explanation
Indices: 20820305--20820346 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
20820295 TTTAAGTAAA
20820305 AAAAAAAGAAGAAAAGT
1 AAAAAAA-AAGAAAAGT
* *
20820322 CAAAAAAATGAAAAGT
1 AAAAAAAAAGAAAAGT
20820338 AAAAAAAAA
1 AAAAAAAAA
20820347 AAAGAAAAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.79, C:0.02, G:0.12, T:0.07
Consensus pattern (16 bp):
AAAAAAAAAGAAAAGT
Found at i:20820653 original size:9 final size:9
Alignment explanation
Indices: 20820639--20820668 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
20820629 GATATTTTAT
20820639 TAATTAAAA
1 TAATTAAAA
20820648 TAATTAAAA
1 TAATTAAAA
20820657 TATATTAAAA
1 TA-ATTAAAA
20820667 TA
1 TA
20820669 TAAGAGCTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (9 bp):
TAATTAAAA
Found at i:20820665 original size:10 final size:10
Alignment explanation
Indices: 20820641--20820670 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
20820631 TATTTTATTA
20820641 ATTAAAATA-
1 ATTAAAATAT
20820650 ATTAAAATAT
1 ATTAAAATAT
20820660 ATTAAAATAT
1 ATTAAAATAT
20820670 A
1 A
20820671 AGAGCTCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
ATTAAAATAT
Found at i:20821738 original size:16 final size:17
Alignment explanation
Indices: 20821717--20821749 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
20821707 AGTACCATTA
20821717 ATTA-TTTAAAAAAATT
1 ATTATTTTAAAAAAATT
*
20821733 ATTATTTTAATAAAATT
1 ATTATTTTAAAAAAATT
20821750 CTAAAATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
ATTATTTTAAAAAAATT
Found at i:20822254 original size:7 final size:7
Alignment explanation
Indices: 20822244--20822282 Score: 60
Period size: 7 Copynumber: 5.6 Consensus size: 7
20822234 CGAAATACAA
20822244 AAAATAT
1 AAAATAT
20822251 AAAATAT
1 AAAATAT
20822258 AAAATAT
1 AAAATAT
*
20822265 AAAATAC
1 AAAATAT
*
20822272 AAAATAC
1 AAAATAT
20822279 AAAA
1 AAAA
20822283 AAAAGAATAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (7 bp):
AAAATAT
Found at i:20822291 original size:21 final size:21
Alignment explanation
Indices: 20822242--20822296 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
20822232 TACGAAATAC
* *
20822242 AAAAAATATAAAATATAAAAT
1 AAAAAATACAAAATACAAAAT
*
20822263 ATAAAATACAAAATACAAAA-
1 AAAAAATACAAAATACAAAAT
*
20822283 AAAAGAATAGAAAA
1 AAAA-AATACAAAA
20822297 AATGGGTGAC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
20 3 0.11
21 25 0.89
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.16
Consensus pattern (21 bp):
AAAAAATACAAAATACAAAAT
Found at i:20822299 original size:37 final size:37
Alignment explanation
Indices: 20822229--20822299 Score: 88
Period size: 37 Copynumber: 1.9 Consensus size: 37
20822219 TATTATTATT
* * * * *
20822229 AAATACGAAATACAAAAAATATAAAATATAAAATATA
1 AAATACAAAATACAAAAAAAAGAAAAGAAAAAATATA
*
20822266 AAATACAAAATACAAAAAAAAGAATAGAAAAAAT
1 AAATACAAAATACAAAAAAAAGAAAAGAAAAAAT
20822300 GGGTGACGGC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 28 1.00
ACGTcount: A:0.73, C:0.06, G:0.04, T:0.17
Consensus pattern (37 bp):
AAATACAAAATACAAAAAAAAGAAAAGAAAAAATATA
Found at i:20823380 original size:20 final size:20
Alignment explanation
Indices: 20823351--20823397 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
20823341 GTTAATTTTT
*
20823351 AAAATGAACTCTAA-GAATAA
1 AAAATAAACT-TAATGAATAA
20823371 AAAATAAACTTAATGAATAA
1 AAAATAAACTTAATGAATAA
*
20823391 TAAATAA
1 AAAATAA
20823398 TAAAAAAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 3 0.12
20 21 0.88
ACGTcount: A:0.64, C:0.06, G:0.06, T:0.23
Consensus pattern (20 bp):
AAAATAAACTTAATGAATAA
Found at i:20825009 original size:12 final size:12
Alignment explanation
Indices: 20824987--20825017 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
20824977 TAATACAAAC
20824987 AAAACAAAACACT
1 AAAA-AAAACACT
20825000 AAAAAAAACACT
1 AAAAAAAACACT
20825012 AAAAAA
1 AAAAAA
20825018 TAAAAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 14 0.78
13 4 0.22
ACGTcount: A:0.77, C:0.16, G:0.00, T:0.06
Consensus pattern (12 bp):
AAAAAAAACACT
Found at i:20835631 original size:49 final size:48
Alignment explanation
Indices: 20835578--20835862 Score: 306
Period size: 43 Copynumber: 6.1 Consensus size: 48
20835568 GTTTTGAGAA
20835578 AAGATAAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
1 AAGATAAGA-TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* * *
20835627 -----AAGATTTTAAAGTTGTTGAGCCTCTGCTAAGAGGAGCCCTTTCC
1 AAGATAAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTTC
** *
20835671 AAGATGAA-ATTTTAAAGTTACTGAGCCTCTGCTGAGAGAAGCTTTTTC
1 AAGAT-AAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* * * *
20835719 -----AAGATTTTAAAGTTGTTAAGCTTCTGCTGAGAAGAGTTTTTTC
1 AAGATAAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* * *
20835762 AAGATAAGATTTTAAAAATTGTTGAGCTTCTGCTGAGAGAAGCTTTTTC
1 AAGATAAGATTTT-AAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
* * *
20835811 AAGAT-GGATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGTTTTTTC
1 AAGATAAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
20835858 AAGAT
1 AAGAT
20835863 TGTTGGCCTC
Statistics
Matches: 195, Mismatches: 27, Indels: 30
0.77 0.11 0.12
Matches are distributed among these distances:
42 2 0.01
43 64 0.33
44 9 0.05
47 35 0.18
48 19 0.10
49 64 0.33
50 2 0.01
ACGTcount: A:0.28, C:0.12, G:0.23, T:0.36
Consensus pattern (48 bp):
AAGATAAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC
Found at i:20835700 original size:92 final size:91
Alignment explanation
Indices: 20835578--20835850 Score: 350
Period size: 92 Copynumber: 2.9 Consensus size: 91
20835568 GTTTTGAGAA
*
20835578 AAGATAAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATTTTAAAGTTGT
1 AAGATAAGA-TTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCTTTTTCAAGATTTTAAAGTTGT
*
20835643 TGAGCCTCTGCTAAGAGGAGCCCTTTCC
65 TGAGCCTCTGCTGAGAGGAG-CCTTTCC
**
20835671 AAGATGAA-ATTTTAAAGTTACTGAGCCTCTGCTGAGAGAAGCTTTTTCAAGATTTTAAAGTTGT
1 AAGAT-AAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCTTTTTCAAGATTTTAAAGTTGT
* * * ** *
20835735 TAAGCTTCTGCTGAGAAGAGTTTTTTC
65 TGAGCCTCTGCTGAGAGGAGCCTTTCC
* *
20835762 AAGATAAGATTTTAAAAATTGTTGAGCTTCTGCTGAGAGAAGCTTTTTCAAGATGGATTTTAAAG
1 AAGATAAGATTTT-AAAGTTGTTGAGCCTCTGCTGAGAGAAGCTTTTTC-A-A--GATTTTAAAG
*
20835827 TTGTTGAGCCTCTGTTGAGAGGAG
61 TTGTTGAGCCTCTGCTGAGAGGAG
20835851 TTTTTTCAAG
Statistics
Matches: 155, Mismatches: 18, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
90 2 0.01
91 14 0.09
92 99 0.64
93 7 0.05
94 3 0.02
96 30 0.19
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.36
Consensus pattern (91 bp):
AAGATAAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGAAGCTTTTTCAAGATTTTAAAGTTGTT
GAGCCTCTGCTGAGAGGAGCCTTTCC
Found at i:20835873 original size:34 final size:35
Alignment explanation
Indices: 20835819--20835896 Score: 97
Period size: 34 Copynumber: 2.3 Consensus size: 35
20835809 TCAAGATGGA
* ** * *
20835819 TTTTAAAG-TTGTTGAGCCTCTGTTGAGAGGAGTT
1 TTTTCAAGATTGTTGAGCCTCTACTAAGAGGAGCT
20835853 TTTTCAAGATTGTTG-GCCTCTACTAAGAGGAGCT
1 TTTTCAAGATTGTTGAGCCTCTACTAAGAGGAGCT
20835887 TTTTCAAGAT
1 TTTTCAAGAT
20835897 AAGATTTCAA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
34 32 0.84
35 6 0.16
ACGTcount: A:0.23, C:0.13, G:0.24, T:0.40
Consensus pattern (35 bp):
TTTTCAAGATTGTTGAGCCTCTACTAAGAGGAGCT
Found at i:20836036 original size:49 final size:48
Alignment explanation
Indices: 20835852--20836036 Score: 158
Period size: 49 Copynumber: 3.8 Consensus size: 48
20835842 TGAGAGGAGT
* *
20835852 TTTTTCAAGATTGTTG-GCCTCTACTAAGAGGAGCTTTTTCAAGAT-AAGA
1 TTTTTAAAG-TTGTTGAGCCTCTGCTAAGAGGAGC-TTTTCAAGATGAA-A
** * * * * *
20835901 TTTCAAAAGTTCTTGAGCCTCTGCTAAAAGGAACTTTTCCAGATGAGA
1 TTTTTAAAGTTGTTGAGCCTCTGCTAAGAGGAGCTTTTCAAGATGAAA
* * * * * *
20835949 CTTTTAAAGTTGTTAAACTTCTGCTAAGAGAACCCTTTTCAAGATGAAA
1 TTTTTAAAGTTGTTGAGCCTCTGCTAAGAGGA-GCTTTTCAAGATGAAA
* *
20835998 TTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGTCTTTT
1 TTTTTAAAGTTGTTGAGCCTCTGCTAAGAGGAG-CTTTT
20836037 TCAGATTTTA
Statistics
Matches: 103, Mismatches: 29, Indels: 8
0.74 0.21 0.06
Matches are distributed among these distances:
48 38 0.37
49 65 0.63
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.37
Consensus pattern (48 bp):
TTTTTAAAGTTGTTGAGCCTCTGCTAAGAGGAGCTTTTCAAGATGAAA
Found at i:20836146 original size:16 final size:16
Alignment explanation
Indices: 20836125--20836156 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
20836115 AATCTATGTT
20836125 CAAAAAAAAAAAGAAA
1 CAAAAAAAAAAAGAAA
*
20836141 CAAAAAAGAAAAGAAA
1 CAAAAAAAAAAAGAAA
20836157 AATCCATTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.84, C:0.06, G:0.09, T:0.00
Consensus pattern (16 bp):
CAAAAAAAAAAAGAAA
Found at i:20836272 original size:3 final size:3
Alignment explanation
Indices: 20836264--20836288 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
20836254 TATTTGACAA
20836264 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
20836289 TTAAATACGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:20836310 original size:22 final size:23
Alignment explanation
Indices: 20836276--20836324 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 23
20836266 TAATAATAAT
* ** *
20836276 AATAATAATAATATTAAATACGA
1 AATAATAAAAATACAAAATACAA
20836299 AATAA-AAAAATACAAAATACAA
1 AATAATAAAAATACAAAATACAA
20836321 AATA
1 AATA
20836325 CCAAAAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.69, C:0.06, G:0.02, T:0.22
Consensus pattern (23 bp):
AATAATAAAAATACAAAATACAA
Found at i:20837319 original size:15 final size:15
Alignment explanation
Indices: 20837301--20837330 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
20837291 TTTTTTTAGA
*
20837301 AATTTTTTTAATATT
1 AATTTTATTAATATT
20837316 AATTTTATTAATATT
1 AATTTTATTAATATT
20837331 TATGCATATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
AATTTTATTAATATT
Found at i:20837431 original size:20 final size:21
Alignment explanation
Indices: 20837401--20837446 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
20837391 TGTTAATTTT
*
20837401 TAAAATGAACTTTAA-GAATAA
1 TAAAATAAAC-TTAATGAATAA
20837422 -AAAATAAACTTAATGAATAA
1 TAAAATAAACTTAATGAATAA
20837442 TAAAA
1 TAAAA
20837447 AATAAGAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 4 0.18
20 14 0.64
21 4 0.18
ACGTcount: A:0.63, C:0.04, G:0.07, T:0.26
Consensus pattern (21 bp):
TAAAATAAACTTAATGAATAA
Found at i:20837616 original size:3 final size:3
Alignment explanation
Indices: 20837610--20837652 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
20837600 TTTTTCTTAT
20837610 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
20837653 AATTAAATAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:20841006 original size:16 final size:16
Alignment explanation
Indices: 20840985--20841015 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
20840975 ACTTTAACAT
*
20840985 AAGTTATCAAGCTTGA
1 AAGTTATCAAACTTGA
20841001 AAGTTATCAAACTTG
1 AAGTTATCAAACTTG
20841016 GCAACTTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (16 bp):
AAGTTATCAAACTTGA
Found at i:20841389 original size:26 final size:26
Alignment explanation
Indices: 20841282--20841400 Score: 88
Period size: 26 Copynumber: 4.6 Consensus size: 26
20841272 TCTTTTGTAT
* *
20841282 TTTATGTATTTATTATTATGTATTAATATC
1 TTTATATATTTATT-TTA--TATT-ATATA
*
20841312 TTTATTTATTTATTTT-TATTA-ATA
1 TTTATATATTTATTTTATATTATATA
*
20841336 -TT-TATATGTATTTTAT-TTATATA
1 TTTATATATTTATTTTATATTATATA
*
20841359 GTTATATATTTATTATTATATTATA-A
1 TTTATATATTTATT-TTATATTATATA
* *
20841385 TTTATGTATTTTTTTT
1 TTTATATATTTATTTT
20841401 CTTGTAATAT
Statistics
Matches: 75, Mismatches: 8, Indels: 17
0.75 0.08 0.17
Matches are distributed among these distances:
22 13 0.17
23 6 0.08
24 4 0.05
25 12 0.16
26 20 0.27
27 5 0.07
29 2 0.03
30 13 0.17
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.66
Consensus pattern (26 bp):
TTTATATATTTATTTTATATTATATA
Found at i:20842513 original size:61 final size:60
Alignment explanation
Indices: 20842448--20843213 Score: 1014
Period size: 61 Copynumber: 12.7 Consensus size: 60
20842438 AAATAAAAAT
* *
20842448 AAAAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCTA
1 AAAAAAAATATTTTTGG-GAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTC-A
*
20842510 AAAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTC-
1 AAAAAAAATATTTTTGGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCA
*** * * *
20842569 -AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
1 AAAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCA
*
20842629 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCA
1 AAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCA
20842690 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTCA
1 AAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCA
* * *
20842750 AAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATTAAAATTTTCA
1 AAAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAA-TTTCA
* *
20842812 AAAAAAAATATTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTCA
1 AAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCA
* * *
20842871 AAAAAAAGTTTTTTTGGGAAAAAATTGAAAGTATCAATTTTCCTTAAAAA-CAAAATTTCAA
1 AAAAAAAATATTTTTGGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTC-A
* *
20842932 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAATTTTCA
1 AAAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAA-TTTCA
* ** * *
20842994 AAAAAAAATATTTTAGGGAAAAGTTGAAAGTATCAATTTTTTTTAAAAAT-AAATTTTGA
1 AAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCA
* * * *
20843053 AAAAAAAGTTTTTTTGGGGAAAAATTGAAAGTATTAATTTTCCTTAAAAA-CAAAATTTC-
1 AAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCA
* *
20843112 AAAAAAATTATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTC-
1 AAAAAAAATATTTTTGGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCA
** *
20843171 AAAAAAGGTTTTTTTGGAGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAAATATTTTTGG-GAAAAGTTGAAAGTATCAATTTTCC
20843214 CTGCACAAAA
Statistics
Matches: 632, Mismatches: 52, Indels: 43
0.87 0.07 0.06
Matches are distributed among these distances:
58 46 0.07
59 133 0.21
60 136 0.22
61 222 0.35
62 91 0.14
63 4 0.01
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.34
Consensus pattern (60 bp):
AAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCA
Found at i:20842788 original size:121 final size:121
Alignment explanation
Indices: 20842448--20843213 Score: 1027
Period size: 121 Copynumber: 6.4 Consensus size: 121
20842438 AAATAAAAAT
* *
20842448 AAAAAAAATATTTTT-GGAGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCTAAA
1 AAAAAAAATATTTTTAGG-GAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTC-AAA
*
20842512 AAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCA
64 AAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCA
*** * * * *
20842570 AAAAAGGGT-TTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAA
1 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCAAAAA
* *
20842633 AAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCA
66 AAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTCA
20842690 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTCAAAAA
1 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCAAAAA
* *
20842754 AAAAGATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTGAAAATTAAAATTTTCA
66 AAAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTT-AAAAATAAAA-TTTCA
*
20842812 AAAAAAAATA-TTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTCAAAAA
1 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCAAAAA
* * * *
20842875 AAAGTTTTTTTGGGAAAAAATTGAAAGTATCAATTTTCCTTAAAAACAAAATTTCAA
66 AAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC-A
* *
20842932 AAAAAAAATATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAATTTTCAAA
1 AAAAAAAATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAA-TTTCAAA
* ** * *
20842996 AAAAAATATTTTAGGG-AAAAGTTGAAAGTATCAATTTTTTTTAAAAATAAATTTTGA
64 AAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCA
* * * * *
20843053 AAAAAAAGTTTTTTTGGGGAAAAATTGAAAGTATTAATTTTCCTTAAAAA-CAAAATTTC-AAAA
1 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCAAAAA
* *
20843116 AAATTATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC-
66 AAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCA
** *
20843171 AAAAAAGGT-TTTTTTGGAGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAAATATTTTTAGG-GAAAAGTTGAAAGTATCAATTTTCC
20843214 CTGCACAAAA
Statistics
Matches: 576, Mismatches: 52, Indels: 36
0.87 0.08 0.05
Matches are distributed among these distances:
117 7 0.01
118 47 0.08
119 94 0.16
120 83 0.14
121 227 0.39
122 98 0.17
123 20 0.03
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.34
Consensus pattern (121 bp):
AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCAAAAA
AAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCA
Found at i:20842796 original size:182 final size:180
Alignment explanation
Indices: 20842448--20843213 Score: 1078
Period size: 182 Copynumber: 4.2 Consensus size: 180
20842438 AAATAAAAAT
* * *
20842448 AAAAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCTAAAA
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTC-AAAA
* * * *
20842513 AAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC-AAAAAAGG
64 AAAAATATTTTTGGGAAAAAATTGAAAGTATCAATTTTCCTTAAAAACAAAATTTCAAAAAAAAG
* * *
20842577 GTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
129 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTTC
* *
20842629 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCAAAAA
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTCAAAAA
* *
20842694 AAAATATTTTTAGGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAAAA
65 AAAATATTTTT-GGGAAAAAATTGAAAGTATCAATTTTCCTTAAAAACAAAATTTC-AAAAAAAA
*
20842758 GATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATTAAAATTTTC
128 GATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTTC
*
20842811 AAAAAAAA-ATATTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAA
1 AAAAAAAATAT-TTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAA
* *
20842875 AAAGTTTTTTTGGGAAAAAATTGAAAGTATCAATTTTCCTTAAAAACAAAATTTCAAAAAAAAAA
65 AAAATATTTTTGGGAAAAAATTGAAAGTATCAATTTTCCTTAAAAACAAAATTTC--AAAAAAAA
* *
20842940 TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAATTTTC
128 GATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTTC
* ** *
20842993 AAAAAAAA-ATATTTTAGGGAAAAGTTGAAAGTATCAATTTTTTTTAAAAATAAATTTTGAAAAA
1 AAAAAAAATAT-TTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAA
* * * * **
20843057 AAAGTTTTTTTGGGGAAAAATTGAAAGTATTAATTTTCCTTAAAAACAAAATTTCAAAAAAATTA
65 AAAATATTTTTGGGAAAAAATTGAAAGTATCAATTTTCCTTAAAAACAAAATTTCAAAAAAAAGA
*
20843122 TTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT--AAATTTTC
130 TTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTTC
** * *
20843171 AAAAAAGGTTTTTTTGGAGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
20843214 CTGCACAAAA
Statistics
Matches: 544, Mismatches: 33, Indels: 19
0.91 0.06 0.03
Matches are distributed among these distances:
178 42 0.08
179 3 0.01
180 103 0.19
181 122 0.22
182 274 0.50
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.34
Consensus pattern (180 bp):
AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAA
AAATATTTTTGGGAAAAAATTGAAAGTATCAATTTTCCTTAAAAACAAAATTTCAAAAAAAAGAT
TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTTC
Found at i:20851946 original size:21 final size:19
Alignment explanation
Indices: 20851913--20851974 Score: 74
Period size: 20 Copynumber: 3.3 Consensus size: 19
20851903 TTTTTTAAGC
*
20851913 AAAAAATAGAAGAAAAGTCA
1 AAAAAATACAAGAAAAGT-A
20851933 AAAAAATGACAAGAAAAGTA
1 AAAAAAT-ACAAGAAAAGTA
*
20851953 AAAAAATA-AATAAAAG-A
1 AAAAAATACAAGAAAAGTA
20851970 AAAAA
1 AAAAA
20851975 CAAGAAAGGA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
17 6 0.15
18 7 0.18
19 1 0.03
20 15 0.38
21 10 0.26
ACGTcount: A:0.76, C:0.03, G:0.11, T:0.10
Consensus pattern (19 bp):
AAAAAATACAAGAAAAGTA
Found at i:20852788 original size:30 final size:30
Alignment explanation
Indices: 20852749--20852834 Score: 106
Period size: 29 Copynumber: 2.9 Consensus size: 30
20852739 TTGATTTATG
20852749 TTAAGAATTTATTTAGATATAAATTAAAATT
1 TTAAGAATTTATTT-GATATAAATTAAAATT
*
20852780 TTAA-AATTTATTTGATATAAATTAAAAAT
1 TTAAGAATTTATTTGATATAAATTAAAATT
* *
20852809 TAAAGAA--TATTTGAATGTAAATTAAA
1 TTAAGAATTTATTTG-ATATAAATTAAA
20852835 GGTAAAGAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
28 6 0.12
29 29 0.58
30 11 0.22
31 4 0.08
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (30 bp):
TTAAGAATTTATTTGATATAAATTAAAATT
Found at i:20853556 original size:24 final size:23
Alignment explanation
Indices: 20853524--20853587 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 23
20853514 TTTTTTAACT
*
20853524 AAAAAAAAAAGAAAGGAAGAG-A
1 AAAAAAAAAAGAAAGGAAAAGTA
* *
20853546 AGTAAAAAAAATGAAAAGAAAAGTA
1 A--AAAAAAAAAGAAAGGAAAAGTA
20853571 AAAAAAAAAAGAAAGGA
1 AAAAAAAAAAGAAAGGA
20853588 TGCGATGGAA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
22 1 0.03
23 14 0.41
24 17 0.50
25 2 0.06
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.05
Consensus pattern (23 bp):
AAAAAAAAAAGAAAGGAAAAGTA
Found at i:20853565 original size:19 final size:20
Alignment explanation
Indices: 20853529--20853577 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
20853519 TAACTAAAAA
*
20853529 AAAAAGAAAGGAAGAG-AAGT
1 AAAAA-AAAGGAAAAGAAAGT
*
20853549 AAAAAAAATGAAAAGAAAAGT
1 AAAAAAAAGGAAAAG-AAAGT
20853570 AAAAAAAA
1 AAAAAAAA
20853578 AAAGAAAGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 8 0.32
20 5 0.20
21 12 0.48
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06
Consensus pattern (20 bp):
AAAAAAAAGGAAAAGAAAGT
Found at i:20857771 original size:20 final size:20
Alignment explanation
Indices: 20857746--20857786 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
20857736 TTTTAGGTGG
20857746 GATTATTGAAGGCGGTTTTA
1 GATTATTGAAGGCGGTTTTA
20857766 GATTATTGAAGGCGGTTTTA
1 GATTATTGAAGGCGGTTTTA
20857786 G
1 G
20857787 TAAAAAACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.05, G:0.32, T:0.39
Consensus pattern (20 bp):
GATTATTGAAGGCGGTTTTA
Found at i:20860465 original size:8 final size:8
Alignment explanation
Indices: 20860452--20860481 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
20860442 ATATATGTAT
20860452 TTATATAA
1 TTATATAA
20860460 TTATATAA
1 TTATATAA
*
20860468 TTATATAT
1 TTATATAA
20860476 TTATAT
1 TTATAT
20860482 TTAACAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (8 bp):
TTATATAA
Found at i:20860495 original size:22 final size:22
Alignment explanation
Indices: 20860470--20860522 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
20860460 TTATATAATT
*
20860470 ATATATTTAT-ATTTAACAAATA
1 ATAT-TTTATGATTTAAAAAATA
*
20860492 ATATTTTATGTTTTAAAAAATA
1 ATATTTTATGATTTAAAAAATA
20860514 ATATTTTAT
1 ATATTTTAT
20860523 TAATTTCGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 5 0.18
22 23 0.82
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (22 bp):
ATATTTTATGATTTAAAAAATA
Found at i:20861306 original size:207 final size:207
Alignment explanation
Indices: 20860990--20861408 Score: 748
Period size: 207 Copynumber: 2.0 Consensus size: 207
20860980 TATTGCATTA
*
20860990 AGATTTATAAATAATATTTTTGGTAATGGGCTTGCATACTAAAAAATCTTTTGAAAGCCGATATC
1 AGATTTATAAATAATATTTTTGGTAATGGGCTTGCATACTAAAAAATCTTCTGAAAGCCGATATC
20861055 GAATAAAATTTATCCAATCTTCAACACTTATTACATCAGCATGTGTCACAAGTGGAATAGCCAAT
66 GAATAAAATTTATCCAATCTTCAACACTTATTACATCAGCATGTGTCACAAGTGGAATAGCCAAT
*
20861120 ACTTCATCTTGATCAGCCAGTGATAAAATATATTGGGTTGTCAATATACTTTTAAAGTCTCTAAA
131 ACTTCATCTTGATCAGCCAGCGATAAAATATATTGGGTTGTCAATATACTTTTAAAGTCTCTAAA
**
20861185 TGCTTTCTTAAT
196 TGCTTTCCCAAT
* *
20861197 AGATTTATAAATAATATTTTTGGTAATGGGCTTGCGTACTAAGAAATCTTCTGAAAGCCGATATC
1 AGATTTATAAATAATATTTTTGGTAATGGGCTTGCATACTAAAAAATCTTCTGAAAGCCGATATC
* * *
20861262 GAATAAAATTTATCCAATCTTTAACACTTATTACATTAGCATGTGTCGCAAGTGGAATAGCCAAT
66 GAATAAAATTTATCCAATCTTCAACACTTATTACATCAGCATGTGTCACAAGTGGAATAGCCAAT
*
20861327 ACTTCATCTTGATCAGCCAGCGATAAAATATATTGGGTTGTCAATATACTTTTAAAGTCTCTACA
131 ACTTCATCTTGATCAGCCAGCGATAAAATATATTGGGTTGTCAATATACTTTTAAAGTCTCTAAA
20861392 TGCTTTCCCAAT
196 TGCTTTCCCAAT
20861404 AGATT
1 AGATT
20861409 GCAACACAAT
Statistics
Matches: 202, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
207 202 1.00
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.35
Consensus pattern (207 bp):
AGATTTATAAATAATATTTTTGGTAATGGGCTTGCATACTAAAAAATCTTCTGAAAGCCGATATC
GAATAAAATTTATCCAATCTTCAACACTTATTACATCAGCATGTGTCACAAGTGGAATAGCCAAT
ACTTCATCTTGATCAGCCAGCGATAAAATATATTGGGTTGTCAATATACTTTTAAAGTCTCTAAA
TGCTTTCCCAAT
Found at i:20861982 original size:25 final size:24
Alignment explanation
Indices: 20861954--20862023 Score: 68
Period size: 25 Copynumber: 2.8 Consensus size: 24
20861944 CAGCAATGTG
*
20861954 CTCAGATATACCATTCAGCAAACCA
1 CTCAGA-ACACCATTCAGCAAACCA
* * *
20861979 CTCAAAAACATCATTCAGCAAATCA
1 CTC-AGAACACCATTCAGCAAACCA
*
20862004 TTCACGAACACCATTCAGCA
1 CTCA-GAACACCATTCAGCA
20862024 TACGATTCAG
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
24 1 0.03
25 33 0.92
26 2 0.06
ACGTcount: A:0.41, C:0.31, G:0.07, T:0.20
Consensus pattern (24 bp):
CTCAGAACACCATTCAGCAAACCA
Found at i:20862032 original size:25 final size:25
Alignment explanation
Indices: 20861963--20862023 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
20861953 GCTCAGATAT
* * **
20861963 ACCATTCAGCAAACCACTCAAAAAC
1 ACCATTCAGCAAATCATTCACGAAC
*
20861988 ATCATTCAGCAAATCATTCACGAAC
1 ACCATTCAGCAAATCATTCACGAAC
20862013 ACCATTCAGCA
1 ACCATTCAGCA
20862024 TACGATTCAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.43, C:0.33, G:0.07, T:0.18
Consensus pattern (25 bp):
ACCATTCAGCAAATCATTCACGAAC
Found at i:20862272 original size:23 final size:25
Alignment explanation
Indices: 20862241--20862288 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 25
20862231 AGCTTTATCG
*
20862241 AATAATATAAATA-ATA-CAGTAAA
1 AATAATATAAAGACATACCAGTAAA
*
20862264 AATATTATAAAGACATACCAGTAAA
1 AATAATATAAAGACATACCAGTAAA
20862289 CAAAAAGATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 11 0.52
24 3 0.14
25 7 0.33
ACGTcount: A:0.60, C:0.08, G:0.06, T:0.25
Consensus pattern (25 bp):
AATAATATAAAGACATACCAGTAAA
Found at i:20862914 original size:186 final size:185
Alignment explanation
Indices: 20862596--20863727 Score: 1159
Period size: 186 Copynumber: 6.1 Consensus size: 185
20862586 TTTTTAAAAG
* * * * *
20862596 AAATTATTGAAGGCGTTTATTATGAAAAAAAACGTCTTCATTAATTATGTACATAAATTAGAAAG
1 AAATTATTGAAGGCGTTTGTTCTGAAAAAATAC-T-TTCAATAATTATGTACATAAATTAGAAGG
* * * * * * *
20862661 AATTAGTAAAGGCGTTGTTTTAAAATAAATGCCTTCACTAACTATTTTAAAATTTAAGTTGTGAA
64 AATTAGTGAAGGCGTTGTTCTAGAATAAACGCCTTCACTAACTATCTTAAAATTTGAGCTGTGAA
* * *
20862726 ATATTGAAGGCGTTTTCCACTGGAAGACGCCTTTAATAATTCCAAAAATTATAAGAGA
129 ATATTGAAGGCGTTTTTCACTAGAAGACACCTTTAATAA-TCCAAAAATTATAAGAGA
* * * * *
20862784 AAATTATCGAAGGTGTTTGTTTTGAAAAAATACTTTCAATAATTATGTAAATAAATTAGAAGAAA
1 AAATTATTGAAGGCGTTTGTTCTGAAAAAATACTTTCAATAATTATGTACATAAATTAGAAGGAA
* ** * * * * * *
20862849 TTAATGAAGATGTTGTTCTAGAATAAACACCTTTACTAACCATATTAAAGTGTGAGCTGTGAAAT
66 TTAGTGAAGGCGTTGTTCTAGAATAAACGCCTTCACTAACTATCTTAAAATTTGAGCTGTGAAAT
* **
20862914 ATTGAAGGCGTTTTTTACT-GAAGATGCCTTTAATAATCTCAAAAATTATAAGAGA
131 ATTGAAGGCGTTTTTCACTAGAAGACACCTTTAATAATC-CAAAAATTATAAGAGA
* * ** *
20862969 AAATTATTGAAGGCGTTTGTTCTGAAAAAATGCATAAAATAATTATGTACGTAAATTAGAAGGAA
1 AAATTATTGAAGGCGTTTGTTCTGAAAAAATACTTTCAATAATTATGTACATAAATTAGAAGGAA
* * * *
20863034 TTAGTGAAGGCGTTGTTCTAGAATAAATGCATTCACTAACCATCTTAAAATTTGAGCTGTGGAAT
66 TTAGTGAAGGCGTTGTTCTAGAATAAACGCCTTCACTAACTATCTTAAAATTTGAGCTGTGAAAT
* * *
20863099 ATTAAAGGCATTTTTCACT-GAAAAACACCTTTAATAATCCTAAAAATTATAAGAGA
131 ATTGAAGGCGTTTTTCACTAG-AAGACACCTTTAATAATCC-AAAAATTATAAGAGA
* * * **
20863155 AAATTATTGAAGGTGTTTGTTCTGAAAAAAATGCCTTCAATAATTATGTATGTAAATTAGAAGGA
1 AAATTATTGAAGGCGTTTGTTCTG-AAAAAATACTTTCAATAATTATGTACATAAATTAGAAGGA
* * * * * *
20863220 ATTAGTAAAGGCATTGTTCTAGAATAAATGCCTTCACTAA-TAGTCTTAAAATTTAAAGTTGTGG
65 ATTAGTGAAGGCGTTGTTCTAGAATAAACGCCTTCACTAACTA-TCTTAAAATTT-GAGCTGTGA
*
20863284 AATATTGAAGGCGTTTTTCACTAGAATACACCTTTAATAATCTCAAAAATTATTGAA-AG-
128 AATATTGAAGGCGTTTTTCACTAGAAGACACCTTTAATAATC-CAAAAATTA-T-AAGAGA
** * * * * *
20863343 AAATTATTGAAAACATTTATTCTCAAAAAATACCTAT-AATAATTATAG-ACGTAAATTAGAAGG
1 AAATTATTGAAGGCGTTTGTTCTGAAAAAATA-CTTTCAATAATTAT-GTACATAAATTAGAAGG
* * * *
20863406 AAGTAGTGAAGGTGTTGTTCTAAAATAAACGCCTTTACTAACTATCTTAAAATTTGAGCTGTGAA
64 AATTAGTGAAGGCGTTGTTCTAGAATAAACGCCTTCACTAACTATCTTAAAATTTGAGCTGTGAA
* * * *
20863471 ATACTGAAGGCATTTTTTATTAGAAGACACCTTTAATAATCCCAAAAATTATAAGA-A
129 ATATTGAAGGCGTTTTTCACTAGAAGACACCTTTAATAAT-CCAAAAATTATAAGAGA
* ** * * * * * *
20863528 GAATTATTGAAGGTATTTGTTCTCAAAAAAATGCCTACAATAATTATGTATATAAATTAAAAGGA
1 AAATTATTGAAGGCGTTTGTTCT-GAAAAAATACTTTCAATAATTATGTACATAAATTAGAAGGA
* * * * * * * *
20863593 ATTAGTGAAGGCATTTTTCTAGAATAAACACTTTGACTAAATGTTTTAAAATTTGAG-TCGTGAA
65 ATTAGTGAAGGCGTTGTTCTAGAATAAACGCCTTCACTAACTATCTTAAAATTTGAGCT-GTGAA
* * * * * *
20863657 AAATTGAAGACATTTTTTACTAGAAGACACATTTAATAATCCCAAACAATTTTTAA-AGAA
129 ATATTGAAGGCGTTTTTCACTAGAAGACACCTTTAATAAT-CCAAA-AA-TTATAAGAG-A
20863717 AAATTATTGAA
1 AAATTATTGAA
20863728 TGTGTTTTTA
Statistics
Matches: 796, Mismatches: 124, Indels: 47
0.82 0.13 0.05
Matches are distributed among these distances:
184 4 0.01
185 182 0.23
186 320 0.40
187 164 0.21
188 108 0.14
189 16 0.02
190 2 0.00
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.34
Consensus pattern (185 bp):
AAATTATTGAAGGCGTTTGTTCTGAAAAAATACTTTCAATAATTATGTACATAAATTAGAAGGAA
TTAGTGAAGGCGTTGTTCTAGAATAAACGCCTTCACTAACTATCTTAAAATTTGAGCTGTGAAAT
ATTGAAGGCGTTTTTCACTAGAAGACACCTTTAATAATCCAAAAATTATAAGAGA
Found at i:20863363 original size:13 final size:13
Alignment explanation
Indices: 20863330--20863354 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20863320 ATAATCTCAA
20863330 AAATTATTGAAAG
1 AAATTATTGAAAG
20863343 AAATTATTGAAA
1 AAATTATTGAAA
20863355 ACATTTATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.32
Consensus pattern (13 bp):
AAATTATTGAAAG
Found at i:20869496 original size:747 final size:747
Alignment explanation
Indices: 20868207--20878492 Score: 14381
Period size: 747 Copynumber: 13.8 Consensus size: 747
20868197 GATATGGGGC
* * * * *
20868207 TGTTCATACGGGACCTGAATGTTATCCTTTTGCTGAATAAAACTTGGATGAAAATATCTTCAATA
1 TGTTGATACGGGAACTGAATGTTATCCTTTTGCTGAACAAAACTTGGATGAAAATATCTCCAGTA
* * * * * * * *
20868272 TCTACACTTAGTGAATCCGTGATGATGTTAATAAAGACATTTATAAACTATGATGGATCAT-TGA
66 CCTACGCTCAGTGGATCCGCGATGATGTTAATGAAGACATTTATGAACCATGATGGATCATCT-A
* * * *
20868336 TATTTTGTAATTCGAGTGTTTATGACATAACATAGTAAATGACTGTATATAATTAATGTCGCATT
130 TATTTTGTAATTTGAGTGTTTATGACATAATATAGTAAATGATTGTATGTAATTAATGTCGCATT
* *
20868401 CATTATTGTATATTTATTGTATTGCAAATCATACATTATCTTTTGATTTAATTAAATCGATATGT
195 CACTATTGTATATTTATTGTATTGTAAATCATACATTATCTTTTGATTTAATTAAATCGATATGT
* * * *
20868466 TCCTTTTGTGTCATAGGTTATGATAAGTTAACTTCTCAATGTCTTTATATTTGTTTTAAAGTTTT
260 TCTTTTTGTATCGTAGGTTATGATAAGTTAACTTCTCAATGTCTTTATATTTGTTCTAAAGTTTT
* * *
20868531 ATCTTTTATATATTCGCTTCTATGATACAGATAAGCTACAATGTGGAGGAGTAGATTGAAAGAAA
325 ATCTTTTATATATTCACTTTTATGATGCAGATAAGCTACAATGTGGAGGAGTAGATTGAAAGAAA
* *
20868596 TACATA-AAAGAAATATTAGTTTAGAACCATCTGCGACACCTATTGATATTGATGATGGTCTGAA
390 TACATATAAA-AAATATTAGTTCAGAACCATCTGCGGCACCTATTGATATTGATGATGGTCTGAA
* * * * * *
20868660 TCCTTTGGAAA-GGAATAAATGTACTGT-TAGATATAACTCAATCACTTCTAACCGTTCAACTGA
454 TCCTTT-GAAAGGGAATGAACGTACTGTCGA-ATCTAACTCAGTCACTTCTAACCCTTCAACTGA
* * * * *
20868723 TATTGGATCTGGTAATACAGGAGGTCTAGGTTTAGACAGTATCCCATCAATTGATTATGCTTTAA
517 TATTGGATCTAGCAATACAAGAGGTCTAGGTTTAGATAGTATCCCGTCAATTGATTATGCTTTAA
* *
20868788 ATTTGAATATCAACACTGGATAACAACTCATCGATGAACCTTATATTTTTTCAACTCAAGTTAAA
582 ATTTGAATATCAACACTGGACAACAACTCATCGATGAACCTTATATTTTTTCATCTCAAGTTAAA
* * *
20868853 CAAGTTTTTTATTTTGAAGATCTCAAAGAATTGGGTTGGTTTGTTGTTATTCGAAACACACCTAG
647 CAAGTTTTTTATTCTGAAGATCCCAAAGAATTGGGTTGGTTTGTTGTTGTTCGAAACACACCTAG
*
20868918 AAACTTATTTGATATGGGGTTAGATACAAGACAT-A
712 AAACTTATTTGATATGGGGCTAGATACAAGACATGA
* *
20868953 GTGTTGATGCGGGAACTGAATGTTATCCTTTTGCTGAACAAAACTTTGATGAAAATATCTCCAGT
1 -TGTTGATACGGGAACTGAATGTTATCCTTTTGCTGAACAAAACTTGGATGAAAATATCTCCAGT
* * *
20869018 ACCTACGCTCAGTGGATCCGTGATGATGTTAATGAAGATATTTAAGAACCATGATGGATCATCTA
65 ACCTACGCTCAGTGGATCCGCGATGATGTTAATGAAGACATTTATGAACCATGATGGATCATCTA
* *
20869083 TATTTTGTAATTTGAATGTTTATGAAATAATATAGTAAATGATTGTATGTAATTAATGTCGCATT
130 TATTTTGTAATTTGAGTGTTTATGACATAATATAGTAAATGATTGTATGTAATTAATGTCGCATT
*
20869148 CACTATTGTATATTTATTGTATTGTAAATCATACATTATCTTTTGATTTAATTAATTCGATATGT
195 CACTATTGTATATTTATTGTATTGTAAATCATACATTATCTTTTGATTTAATTAAATCGATATGT
* *
20869213 TCTTTTTGTATCGTAGGTTATGATAAGTTAACCTTC-AAATGTCTTTATATTTGTTATAAAGTTT
260 TCTTTTTGTATCGTAGGTTATGATAAGTTAA-CTTCTCAATGTCTTTATATTTGTTCTAAAGTTT
*
20869277 TATCTTTTATATATTCATTTTTATGATGCAGATAAGCTACAATGTGGAGGAGTAGATTGAAAGAA
324 TATCTTTTATATATTCACTTTTATGATGCAGATAAGCTACAATGTGGAGGAGTAGATTGAAAGAA
* * * * * * *
20869342 ATACATATTAGAAATTTTAGTTTAGAATCATCTACGGCACCTGTTGATATTGATGATGGTCTGAA
389 ATACATATAAAAAATATTAGTTCAGAACCATCTGCGGCACCTATTGATATTGATGATGGTCTGAA
* * * * * * * *
20869407 TCTTTTAAAAGGGAATGAACGTATTGTCAAAACTAACTCAGTCACTTTTAACCTTTTAACTGATA
454 TCCTTTGAAAGGGAATGAACGTACTGTCGAATCTAACTCAGTCACTTCTAACCCTTCAACTGATA
* * *
20869472 TTGGATCTAGCAATACATGAGGTCTAGGTTTAGATAGTAT-CCGATTAATTTATTATGCTTTAAA
519 TTGGATCTAGCAATACAAGAGGTCTAGGTTTAGATAGTATCCCG-TCAATTGATTATGCTTTAAA
* * * **
20869536 TTTGAATATCAACATTGGACAACAACTTATCAATGAATTTTATATTTTTTCATCTCAAGTTAAAC
583 TTTGAATATCAACACTGGACAACAACTCATCGATGAACCTTATATTTTTTCATCTCAAGTTAAAC
* * *
20869601 AAGTTTTTTATTCTTAAGATCCCAAAGAATTAGGTTGGTTTGTTGTTGTGCGAAACACACCTAGA
648 AAGTTTTTTATTCTGAAGATCCCAAAGAATTGGGTTGGTTTGTTGTTGTTCGAAACACACCTAGA
* * *
20869666 AACTTATTCGACATGGAGCTAGATACAAGACATGA
713 AACTTATTTGATATGGGGCTAGATACAAGACATGA
* * *** *
20869701 TGTTGATACGGGAATTGAATGTTATACTTTTGCTGAACAAAACTCCAATAAAAATATCTCCAGTA
1 TGTTGATACGGGAACTGAATGTTATCCTTTTGCTGAACAAAACTTGGATGAAAATATCTCCAGTA
* * * *
20869766 CCTACGTTCAGTGGATCCGCGATAATGTTAATAAAGACATTTATGAACCATGATAGATCATCTAT
66 CCTACGCTCAGTGGATCCGCGATGATGTTAATGAAGACATTTATGAACCATGATGGATCATCTAT
** *
20869831 ATTTTGTAATTCAAGTGTTTATGAAATAATATAGTAAATGATTGTATGTAATTAATGTCGCATTC
131 ATTTTGTAATTTGAGTGTTTATGACATAATATAGTAAATGATTGTATGTAATTAATGTCGCATTC
* *
20869896 ACTATTGTATATTTATTGTATTGTAAATCATACACTATCTTTTGATTTAATTAATTCGATATGTT
196 ACTATTGTATATTTATTGTATTGTAAATCATACATTATCTTTTGATTTAATTAAATCGATATGTT
* *
20869961 CTTTTTGTATCGTAGGTTATGATAAGTTAACTTCCCAATGTCTTTATATTTGTTATAAAGTTTTA
261 CTTTTTGTATCGTAGGTTATGATAAGTTAACTTCTCAATGTCTTTATATTTGTTCTAAAGTTTTA
*
20870026 TCTTTTATATATTCATTTTTATGATGCAGATAAGCTACAATGTGGAGGAGTAGATTGAAAGAAAT
326 TCTTTTATATATTCACTTTTATGATGCAGATAAGCTACAATGTGGAGGAGTAGATTGAAAGAAAT
* * * * * * * *
20870091 ATATATTAGAAATTTTAGTTTAGAATCATCTACGGCACCTGTTGATATTGATGATGGTCTGAATC
391 ACATATAAAAAATATTAGTTCAGAACCATCTGCGGCACCTATTGATATTGATGATGGTCTGAATC
* * * * * * * *
20870156 TTTTAAAAGGGAATGAACGTATTGTCAAAACTAACTCAGTCACTTTTAACCTTTTAACTGATATT
456 CTTTGAAAGGGAATGAACGTACTGTCGAATCTAACTCAGTCACTTCTAACCCTTCAACTGATATT
*
20870221 GGATCTAGCAATACAAGAGGTCTAGGTTTAGATAGTAT-CCGATTAATTGATTATGCTTTAAATT
521 GGATCTAGCAATACAAGAGGTCTAGGTTTAGATAGTATCCCG-TCAATTGATTATGCTTTAAATT
* * * *
20870285 TGAATATCAACATTGGACAACAACTTATCAATGAACTTTATATTTTTTCATCTCAAGTTAAACAA
585 TGAATATCAACACTGGACAACAACTCATCGATGAACCTTATATTTTTTCATCTCAAGTTAAACAA
* * *
20870350 GTTTTTTATTCTGAAGATCCCAAAGAATTAGGTTGGTTGGTTGTTGTGCGAAACACACCTAGAAA
650 GTTTTTTATTCTGAAGATCCCAAAGAATTGGGTTGGTTTGTTGTTGTTCGAAACACACCTAGAAA
* *
20870415 CTTATTCGATATGGAGCTAGATACAAGACATGA
715 CTTATTTGATATGGGGCTAGATACAAGACATGA
* ** *
20870448 TGTTGATACGGGAATTGAATGTTATATTTTTGCTGAACAAAACTTGGATAAAAATATCTCCAGTA
1 TGTTGATACGGGAACTGAATGTTATCCTTTTGCTGAACAAAACTTGGATGAAAATATCTCCAGTA
* * *
20870513 CCTAAGCTCAGTGGATCCACGATAATGTTAATGAAGACATTTATGAACCATGATGGATCATCTAT
66 CCTACGCTCAGTGGATCCGCGATGATGTTAATGAAGACATTTATGAACCATGATGGATCATCTAT
** **
20870578 ATTTTGTAATTCAAGTGTTTATGACATAATATAGTAAATGATTGTATGTAATTAATGTCATATTC
131 ATTTTGTAATTTGAGTGTTTATGACATAATATAGTAAATGATTGTATGTAATTAATGTCGCATTC
* * *
20870643 AGTATTGTATATTTATTGTATTGTAAATCATACATTATCTTTTGATTTAATTAAATTGATATATA
196 ACTATTGTATATTTATTGTATTGTAAATCATACATTATCTTTTGATTTAATTAAATCGATATGT-
* *
20870708 TTTTTTTGTATCGTAGGTTATGATAAGTTAACTTCTCAATGTCTTTATATATGTTCTAAAGTTTT
260 TCTTTTTGTATCGTAGGTTATGATAAGTTAACTTCTCAATGTCTTTATATTTGTTCTAAAGTTTT
** * * *
20870773 ATCTTTTATATATTTGCTATTATGATTCAGATAAGCTACAATGTGGAGAAGTAGATTGAAAGAAA
325 ATCTTTTATATATTCACTTTTATGATGCAGATAAGCTACAATGTGGAGGAGTAGATTGAAAGAAA
* * * * * * *
20870838 TATATATAAGAAATATTAGTTCAGAACCATCTGTGACACCTGTTGATATTGATGATGGTTTGAAC
390 TACATATAAAAAATATTAGTTCAGAACCATCTGCGGCACCTATTGATATTGATGATGGTCTGAAT
* * * * * *
20870903 CCTTTGAAAGGGAATGAATGTATTGT-AAGATCTAACTCAGTTACTTCTAACCTTTCAATTGATA
455 CCTTTGAAAGGGAATGAACGTACTGTCGA-ATCTAACTCAGTCACTTCTAACCCTTCAACTGATA
* * *
20870967 TTGGATCT-GACAATACAAGAGGTTTAGGTTTAGATAGTATCTCGTCAATTGATTATCCTTTAAA
519 TTGGATCTAG-CAATACAAGAGGTCTAGGTTTAGATAGTATCCCGTCAATTGATTATGCTTTAAA
*
20871031 TTTGAATATCAACACTGGACAACAACTCATCGATGAACCTTATATTTTTTCATTTCAAGTTAAAC
583 TTTGAATATCAACACTGGACAACAACTCATCGATGAACCTTATATTTTTTCATCTCAAGTTAAAC
* * * * * *
20871096 AAATTTTTTATTCTGAATATCCCAAAGAATTGAGTTGATTTGTTGTTGTTTC-AAACACATCTAA
648 AAGTTTTTTATTCTGAAGATCCCAAAGAATTGGGTTGGTTTGTTGTTG-TTCGAAACACACCTAG
20871160 AAACTTATTTGATATGGGGCTAGATACAAGACATGA
712 AAACTTATTTGATATGGGGCTAGATACAAGACATGA
* * * * *
20871196 TGTTCATACGGGAACTGAATGTTATCCTTTAGCTAAACAAAACTTAGATGAAAATATCTCTAGTA
1 TGTTGATACGGGAACTGAATGTTATCCTTTTGCTGAACAAAACTTGGATGAAAATATCTCCAGTA
* * * * * *
20871261 CCTATGCTCAATAGATCCACGATGATGTTAATGAAGACATTTATGAATCATGATGGATCATTTAT
66 CCTACGCTCAGTGGATCCGCGATGATGTTAATGAAGACATTTATGAACCATGATGGATCATCTAT
* * *
20871326 ATTTTGTAATTTGAGTATTTATGACATAATATAGTAAATGATTGTAAGTAATTAATTTCGCATTC
131 ATTTTGTAATTTGAGTGTTTATGACATAATATAGTAAATGATTGTATGTAATTAATGTCGCATTC
* * *
20871391 AATATTGTATATTTATTGTATTGTAAATCATACATTATCTTTTGGTTTAATTAAATTGATATGTT
196 ACTATTGTATATTTATTGTATTGTAAATCATACATTATCTTTTGATTTAATTAAATCGATATGTT
*
20871456 -TTTTTGTATCGTAGGTTATGATAAGTTAACTTCTTAATGTCTTTATATTTGTTCTAAAGTTTTA
261 CTTTTTGTATCGTAGGTTATGATAAGTTAACTTCTCAATGTCTTTATATTTGTTCTAAAGTTTTA
* * * *
20871520 TCTTTTGTATATTCACTTTTATGATACAGATAAGCTACAATGTTGAGGAGTAGATTTAAAGAAAT
326 TCTTTTATATATTCACTTTTATGATGCAGATAAGCTACAATGTGGAGGAGTAGATTGAAAGAAAT
* * * *
20871585 ACATATAAAAAATATTAGTTCAGAACCATTTGTGGCACCTATTGATATTGACGATAGTCTGAATC
391 ACATATAAAAAATATTAGTTCAGAACCATCTGCGGCACCTATTGATATTGATGATGGTCTGAATC
* * * * * *
20871650 CTTTGGAAGGAAATGAACGTACTGTC-AGATCTAACTCAGTAACTTCTAATCGTTCAATTGATAT
456 CTTTGAAAGGGAATGAACGTACTGTCGA-ATCTAACTCAGTCACTTCTAACCCTTCAACTGATAT
* * * * ** *
20871714 TGGATCTGGTAATATAGGAGGTCTAGGTTTAGATAGTATCCAAT-AATTGATTATGCTTTCAATT
520 TGGATCTAGCAATACAAGAGGTCTAGGTTTAGATAGTATCCCGTCAATTGATTATGCTTTAAATT
* * * *
20871778 TGAATATCAACACCGGATAACAACTCATCGATGAACCTTATATTTTTTCATCTTAAGCTAAACAA
585 TGAATATCAACACTGGACAACAACTCATCGATGAACCTTATATTTTTTCATCTCAAGTTAAACAA
* * * * * * *
20871843 GTTTTTTATTTTGAAGATCTCAAAGAATTAGGTTCGTTTATTGTTGTTCAAAACATACCTAGAAA
650 GTTTTTTATTCTGAAGATCCCAAAGAATTGGGTTGGTTTGTTGTTGTTCGAAACACACCTAGAAA
*
20871908 CTTATTTGATATGGGGCTAGATACAAGACATAA
715 CTTATTTGATATGGGGCTAGATACAAGACATGA
* * * * *
20871941 TGTTGATATGGGAACTAAATGTTATCCTTCTGCTAAACAAAACTTGGATGAAAATATCTCTAGTA
1 TGTTGATACGGGAACTGAATGTTATCCTTTTGCTGAACAAAACTTGGATGAAAATATCTCCAGTA
* *
20872006 CCAACGCTCAGTGGATCCGTGATGATGTTAATGAAGACATTTATGAACCATGATGGATCATCTAT
66 CCTACGCTCAGTGGATCCGCGATGATGTTAATGAAGACATTTATGAACCATGATGGATCATCTAT
*
20872071 ATTTTGTAATTTGAGTGTTTATGACATAATATAGTAAATGATTGTATGTAACTAATGTCGCATTC
131 ATTTTGTAATTTGAGTGTTTATGACATAATATAGTAAATGATTGTATGTAATTAATGTCGCATTC
* * * *
20872136 AATATTATATATTTATTGTATTGTAAATCATACACTATCTTTTGATTTAATTAAATCGATATATT
196 ACTATTGTATATTTATTGTATTGTAAATCATACATTATCTTTTGATTTAATTAAATCGATATGTT
* * *
20872201 CTTTTTGTATTGTAGGTTATGATAAGTTAACTTTTCAATATCTTTATATTTGTTCTAAAGTTTTA
261 CTTTTTGTATCGTAGGTTATGATAAGTTAACTTCTCAATGTCTTTATATTTGTTCTAAAGTTTTA
* * *
20872266 TCTTTTATATATTCACTTTTACGATGTAGATAAGCTACAATGTGGAGAAGTAGATTGAAAGAAAT
326 TCTTTTATATATTCACTTTTATGATGCAGATAAGCTACAATGTGGAGGAGTAGATTGAAAGAAAT
* * * * * *
20872331 ACATATAAGAAATATTAGTTCAAAACCATCTACAGCATCTATTGATATTGATGATGGTCTAAAT-
391 ACATATAAAAAATATTAGTTCAGAACCATCTGCGGCACCTATTGATATTGATGATGGTCTGAATC
* * * * * * *
20872395 CTTTTATAAAGGATTGAACATACTGTCGAAACTAACTCAGTTACTTCTAACCATTCAACTGATAT
456 CTTTGA-AAGGGAATGAACGTACTGTCGAATCTAACTCAGTCACTTCTAACCCTTCAACTGATAT
*
20872460 TGGATCTAGCAATACAAGAGGTCTAGGTTTAGATAGTATCCCATCAATTGATTATGCTTTAAATT
520 TGGATCTAGCAATACAAGAGGTCTAGGTTTAGATAGTATCCCGTCAATTGATTATGCTTTAAATT
* *
20872525 TGAATATCAACACTAGATAACAACTCATCGATGAACCTTATATTTTTTCATCTCAAGTTAAACAA
585 TGAATATCAACACTGGACAACAACTCATCGATGAACCTTATATTTTTTCATCTCAAGTTAAACAA
* * * * * *
20872590 GTTTTTTATTATGAAAATCCCAAAAAATTGAGTTGGTTTGTTGTTGTTCAAAACAAACCTAGAAA
650 GTTTTTTATTCTGAAGATCCCAAAGAATTGGGTTGGTTTGTTGTTGTTCGAAACACACCTAGAAA
*
20872655 CTTATTTGATATGGAGCTAGATACAAGACATGA
715 CTTATTTGATATGGGGCTAGATACAAGACATGA
* ** * *
20872688 TGTTGATACGGGAATTGAATGTTATCCTTTTGCTGGCCAAAATTTGGATAAAAATATCTCCAGTA
1 TGTTGATACGGGAACTGAATGTTATCCTTTTGCTGAACAAAACTTGGATGAAAATATCTCCAGTA
* * * *
20872753 CCTATGCTTAGTGGAT-CGTGATGATGTTAATGAAGACATTTATGAACCATGATGGATCATTTAT
66 CCTACGCTCAGTGGATCCGCGATGATGTTAATGAAGACATTTATGAACCATGATGGATCATCTAT
* * * * *
20872817 ATTTTATAATTCGAGTGTTTATGACATAATATGGTAAATGATTGTATGTAATTAATGCCACATTC
131 ATTTTGTAATTTGAGTGTTTATGACATAATATAGTAAATGATTGTATGTAATTAATGTCGCATTC
* *
20872882 ATTATTATATATTTATTGTATTGTAAATCATACATT-T-TTTT-ATTTAATTAAATCGATATGTT
196 ACTATTGTATATTTATTGTATTGTAAATCATACATTATCTTTTGATTTAATTAAATCGATATGTT
* * * *
20872944 CTTTTTATATTGTAGGTTATGATAAGTTAACCTCTCATTGTCTTTATATTTGTTCTAAAGTTTTA
261 CTTTTTGTATCGTAGGTTATGATAAGTTAACTTCTCAATGTCTTTATATTTGTTCTAAAGTTTTA
* * *
20873009 TCTTTTATGTATTCACTTTTATGATGCAGATAAGCTACAATATGGAGAAGTAGATTGAAAGAAAT
326 TCTTTTATATATTCACTTTTATGATGCAGATAAGCTACAATGTGGAGGAGTAGATTGAAAGAAAT
* * * * *
20873074 ACATATAAGAAATATTAGTTCAGAACCATCTGCGTCACCTGTTGATATTGACGATGGTCTGGATC
391 ACATATAAAAAATATTAGTTCAGAACCATCTGCGGCACCTATTGATATTGATGATGGTCTGAATC
* * * * * * * *
20873139 CTTTGAAAAGGAATGAACATATTGTTGGATCTAATTCAGTTACTTCTAAGCCTTCAACTGATATT
456 CTTTGAAAGGGAATGAACGTACTGTCGAATCTAACTCAGTCACTTCTAACCCTTCAACTGATATT
* * **
20873204 GGATCT-GACAATACAAGAGGTCTAAGTTTAGATAGTATCTCGTCAATTGATTATAATTTAAATT
521 GGATCTAG-CAATACAAGAGGTCTAGGTTTAGATAGTATCCCGTCAATTGATTATGCTTTAAATT
* * * * *
20873268 TGAATTTCAGCTCTTGACAACAACTCATCGATGAACTTTATATTTTTTCATCTCAAGTTAAACAA
585 TGAATATCAACACTGGACAACAACTCATCGATGAACCTTATATTTTTTCATCTCAAGTTAAACAA
* * **
20873333 GTTTTTTATTCTAAAGATCCCAAAGAATTAGGTTGGTTTGTTGTTGTTCGAAATGCACCTAGAAA
650 GTTTTTTATTCTGAAGATCCCAAAGAATTGGGTTGGTTTGTTGTTGTTCGAAACACACCTAGAAA
20873398 CTTATTTGATATGGGGCTAGATACAAGACATGA
715 CTTATTTGATATGGGGCTAGATACAAGACATGA
** **
20873431 TGTTGATACGGGAACTGAATGTTATCCTTTTGCCAAACAAAACTTGGATGAAAATATCTGTAGTA
1 TGTTGATACGGGAACTGAATGTTATCCTTTTGCTGAACAAAACTTGGATGAAAATATCTCCAGTA
* * *
20873496 CCTATGCTCAGTGGATCCACGATGATGTTAATGAAGACATTTAAGAACCATGATGGATCATCTAT
66 CCTACGCTCAGTGGATCCGCGATGATGTTAATGAAGACATTTATGAACCATGATGGATCATCTAT
* * *
20873561 ATTTTGTAATTCGAGTATTTATGACATAATATAGTAAATGATTGTAAGTAATTAATGTCGCATTC
131 ATTTTGTAATTTGAGTGTTTATGACATAATATAGTAAATGATTGTATGTAATTAATGTCGCATTC
*
20873626 ACTATTGTATATTTATTGTATTGTAAATCATACATTATCTTTTGATTTAATTAAATTGATATGTT
196 ACTATTGTATATTTATTGTATTGTAAATCATACATTATCTTTTGATTTAATTAAATCGATATGTT
* *
20873691 CTTGTTGTATCGTAGGTTATGATAAGTTAACTTCTCAATGTCTTTATTTTTGTTCTAAAGTTTTA
261 CTTTTTGTATCGTAGGTTATGATAAGTTAACTTCTCAATGTCTTTATATTTGTTCTAAAGTTTTA
* * * * * * * *
20873756 TCTTTTATATTTTCGCTTTTATGATGCAGATAAGCTATAATATGAAGGAGTAGAGTGGACGAAAT
326 TCTTTTATATATTCACTTTTATGATGCAGATAAGCTACAATGTGGAGGAGTAGATTGAAAGAAAT
* * * * * *
20873821 ACATATCAAAAATATTTGTTCAGAACCATCTGCGGCACTTGTTGATATTGATGATTGTCTTAATC
391 ACATATAAAAAATATTAGTTCAGAACCATCTGCGGCACCTATTGATATTGATGATGGTCTGAATC
* * * *
20873886 CTTTGGAAA-GGAATAAACATACTATCGGATCTAACTCAGTCACTTCTAACCCTTCAACTGATAT
456 CTTT-GAAAGGGAATGAACGTACTGTCGAATCTAACTCAGTCACTTCTAACCCTTCAACTGATAT
* * * *
20873950 TGGATTTGGCAATACAGGAAGTCTAGGTTTAGATAGTATCCCGTCAATTGATTATGCTTTAAATT
520 TGGATCTAGCAATACAAGAGGTCTAGGTTTAGATAGTATCCCGTCAATTGATTATGCTTTAAATT
* * * * * *
20874015 TGAATATCAACACTGGATAACAATTCATCAAAGAACCTTGTATTTTTTTCATCTCAAGTTAAAAA
585 TGAATATCAACACTGGACAACAACTCATCGATGAACCTTATA-TTTTTTCATCTCAAGTTAAACA
* * * * * * * *
20874080 AGCTTTTTATTATAAAGATCTCAAAGAATTGGGCTGATTTGTTGTTGTTCAAAACACACCTATAA
649 AGTTTTTTATTCTGAAGATCCCAAAGAATTGGGTTGGTTTGTTGTTGTTCGAAACACACCTAGAA
20874145 ACTTATTTGATATGGGGCTAGATACAAGACATGA
714 ACTTATTTGATATGGGGCTAGATACAAGACATGA
* * * * * ** *
20874179 TGCTGATATGGGAACTTAATGTTATCCTTTGGCTGAACAAAACTTGGAGGAAAATATCTTTAATA
1 TGTTGATACGGGAACTGAATGTTATCCTTTTGCTGAACAAAACTTGGATGAAAATATCTCCAGTA
* * * *
20874244 CCTATGCTCAGTGGATCCGCGATGATGTTAATAAAGATATTTATGAACCATGATGGATCATTTAT
66 CCTACGCTCAGTGGATCCGCGATGATGTTAATGAAGACATTTATGAACCATGATGGATCATCTAT
* * * * *
20874309 ATTTTGTAATTTGTGTGTTTATGACTTAATATAGTAAATGATTATATGGAATTAATGTCGCATTT
131 ATTTTGTAATTTGAGTGTTTATGACATAATATAGTAAATGATTGTATGTAATTAATGTCGCATTC
* * *
20874374 ACTATTGTCTATTTATTGAATTGTAAATCATACATTGTCTTTTGATTTAATTAAATCGATATGTT
196 ACTATTGTATATTTATTGTATTGTAAATCATACATTATCTTTTGATTTAATTAAATCGATATGTT
* * *
20874439 CTTTTT-TCATCGTAGGTTATGATAAGTTAACTTCTTAATGTCTTTACATTTGCTCTAAAGTTTT
261 CTTTTTGT-ATCGTAGGTTATGATAAGTTAACTTCTCAATGTCTTTATATTTGTTCTAAAGTTTT
* * * *
20874503 ATTTTTTATATACTCACTTTTATGATGCAGATAAGCTACAATATGAAGGAGTAGATTGAAAGAAA
325 ATCTTTTATATATTCACTTTTATGATGCAGATAAGCTACAATGTGGAGGAGTAGATTGAAAGAAA
* *
20874568 TACATATAAAAAATATTAGTTCAGAATCATCTGTGGCACCTATTGATATTGATGATGGTCTGAAT
390 TACATATAAAAAATATTAGTTCAGAACCATCTGCGGCACCTATTGATATTGATGATGGTCTGAAT
* * * * * *
20874633 CCTTTGGAAGGGAATGAACGAACTATCGGATCTAACTCAGTCACTTCTAACTCTTCAATTGATAT
455 CCTTTGAAAGGGAATGAACGTACTGTCGAATCTAACTCAGTCACTTCTAACCCTTCAACTGATAT
* * * * *
20874698 TGGAT-TTGACAATACAAGATGTCTAGGTTTAAATAGTATCTCGACAATTGATTATGCTTTAAAT
520 TGGATCTAG-CAATACAAGAGGTCTAGGTTTAGATAGTATCCCGTCAATTGATTATGCTTTAAAT
* * *
20874762 TTGAATATCAACATTGGATAACAACTCATCGATGAGCCTTATATTTTTTCATCTCAAGTTAAACA
584 TTGAATATCAACACTGGACAACAACTCATCGATGAACCTTATATTTTTTCATCTCAAGTTAAACA
* * * ** * *
20874827 AATTTTTTATTTTGATGATCTTAAAGTATTGGGTTGGTTTGTTGTTGTTCGAAACACACCTAAAA
649 AGTTTTTTATTCTGAAGATCCCAAAGAATTGGGTTGGTTTGTTGTTGTTCGAAACACACCTAGAA
*
20874892 ACTTTTTTGATATGGGGCTAGATACAAGACATGA
714 ACTTATTTGATATGGGGCTAGATACAAGACATGA
* * * * *
20874926 TGTTGATACGGGAACTAAATGTTATCCTTTTGCTGAATAAAACTTGGATGAAAGTATCTCTAATA
1 TGTTGATACGGGAACTGAATGTTATCCTTTTGCTGAACAAAACTTGGATGAAAATATCTCCAGTA
* * ** * *
20874991 CCTACGCTTAGTAGATTTGCAATGATGTTAATGAAGATATTTATGAACCATGATGGATCATCTAT
66 CCTACGCTCAGTGGATCCGCGATGATGTTAATGAAGACATTTATGAACCATGATGGATCATCTAT
** *
20875056 ATTTTGTAATTCAAGTGTTTATGACATAATATAGTAAATGATTATATGTAATTAATGTCGCATTC
131 ATTTTGTAATTTGAGTGTTTATGACATAATATAGTAAATGATTGTATGTAATTAATGTCGCATTC
20875121 ACTATTGTATATTTATTGTATTGTAAATCATACATTATCTTTTGATTTAATTAAATCGATATGTT
196 ACTATTGTATATTTATTGTATTGTAAATCATACATTATCTTTTGATTTAATTAAATCGATATGTT
* * * *
20875186 CCTTTTGCATCGTAGGTTATGATAAGTGAACTTCTTAATGTCTTTATATTTGTTCTAAAGTTTTA
261 CTTTTTGTATCGTAGGTTATGATAAGTTAACTTCTCAATGTCTTTATATTTGTTCTAAAGTTTTA
* *
20875251 TCTTTTATATATTTACTTTTATGATGTAGATAAGCTACAATGTGGAGGAGTAGATTGAAAGAAAT
326 TCTTTTATATATTCACTTTTATGATGCAGATAAGCTACAATGTGGAGGAGTAGATTGAAAGAAAT
* * * * *
20875316 ACATATAAAAAATATTAGTTCAAAATCATCTGCGACACCTATTGATATTGACGATGGTCTAAATC
391 ACATATAAAAAATATTAGTTCAGAACCATCTGCGGCACCTATTGATATTGATGATGGTCTGAATC
* * * * *
20875381 CTTTGGAAGGGAATGAACGTACTGTTGGATCTAACTTAGTCACTTCTAACCCTTCAACTAATATT
456 CTTTGAAAGGGAATGAACGTACTGTCGAATCTAACTCAGTCACTTCTAACCCTTCAACTGATATT
* * * ** * * *
20875446 GTATCGAGCAACACAAGAGGTCTTCGTTTAAATAGTATCTCGTCAATTGATTATGATTTAAATTT
521 GGATCTAGCAATACAAGAGGTCTAGGTTTAGATAGTATCCCGTCAATTGATTATGCTTTAAATTT
* * * * * *
20875511 GAATCTTAACACTAGATAACAACTCATCGATAAACCTTATATTTTTTCATTTTC-AGTTAAACAA
586 GAATATCAACACTGGACAACAACTCATCGATGAACCTTATATTTTTTCA-TCTCAAGTTAAACAA
* * * * *
20875575 GTTTCTTATTTTGAAGATCTCAAAGAATTGGGTTGGTTTGTTGTTGTTCGAAATACACCTAAAAA
650 GTTTTTTATTCTGAAGATCCCAAAGAATTGGGTTGGTTTGTTGTTGTTCGAAACACACCTAGAAA
*
20875640 CTTTTTTGATATGGGGCTAGATACAAGACATGA
715 CTTATTTGATATGGGGCTAGATACAAGACATGA
* ** * * *
20875673 GGTTGATACGAAAACTTAATGTTATCCTTTTGCTGAACAAAACTCGGATGAAAATATCTCCAATA
1 TGTTGATACGGGAACTGAATGTTATCCTTTTGCTGAACAAAACTTGGATGAAAATATCTCCAGTA
* ** * *
20875738 CCTATGCTCAGTAAATACGCGATGATGTTAATGAAGACATTTATGAACCATGATGGATCATTTAT
66 CCTACGCTCAGTGGATCCGCGATGATGTTAATGAAGACATTTATGAACCATGATGGATCATCTAT
* *
20875803 ATTTTGTAATTCT-AGTGTTTATGATATAAAATAGTAAATGATTGTATGTAATTAATGTCGCATT
131 ATTTTGTAATT-TGAGTGTTTATGACATAATATAGTAAATGATTGTATGTAATTAATGTCGCATT
* * * *
20875867 CTCTATTCTATATGTATTGTATTGTAAATCATACATTATCTTTTGATTTAATTAAATTGATATGT
195 CACTATTGTATATTTATTGTATTGTAAATCATACATTATCTTTTGATTTAATTAAATCGATATGT
* * * *
20875932 TCATTTTGCATCGTCGATTATGATAAGTTAACTTCTCAATGTCTTTATATTTGTTCTAAAGTTTT
260 TCTTTTTGTATCGTAGGTTATGATAAGTTAACTTCTCAATGTCTTTATATTTGTTCTAAAGTTTT
** *
20875997 ATCTTTTATATATTCGGTTTTATGATGCAGATAAGCTA-AATGTGGAGGAGTAAATTGAAAGAAA
325 ATCTTTTATATATTCACTTTTATGATGCAGATAAGCTACAATGTGGAGGAGTAGATTGAAAGAAA
* * * * *
20876061 TACATATAAAAAATATTAGTTTAGAATCATCTGTGGCACCTGTTGATATTGATGATGGTCT-AAA
390 TACATATAAAAAATATTAGTTCAGAACCATCTGCGGCACCTATTGATATTGATGATGGTCTGAAT
* * * * * *
20876125 CCTTTTAGAATGGAATGAATGTACTGTCGAAACTAACTCAGTCACTTTTAATCCTTCAACTGATA
455 CCTTTGA-AAGGGAATGAACGTACTGTCGAATCTAACTCAGTCACTTCTAACCCTTCAACTGATA
* * *
20876190 TAGGATCTAGCAATACATGAGGTCAAGGTTTAGATAGTATCCCGTCAATTGATTATGCTTTAAAT
519 TTGGATCTAGCAATACAAGAGGTCTAGGTTTAGATAGTATCCCGTCAATTGATTATGCTTTAAAT
* * * **
20876255 TTGAATATCAACACTAGACAATAACTCATCGATAAACCTTATAAGTTTTCATCTCAAGTTAAACA
584 TTGAATATCAACACTGGACAACAACTCATCGATGAACCTTATATTTTTTCATCTCAAGTTAAACA
* ** * * *
20876320 AGTTTTTTATTCTAAAGATCATAAAGAATTGGGTTGGTTTGTTATTGTTCAAAACACACGTAGAA
649 AGTTTTTTATTCTGAAGATCCCAAAGAATTGGGTTGGTTTGTTGTTGTTCGAAACACACCTAGAA
*
20876385 ACTTATTTGATATGGAGCTAGATACAAGACATGA
714 ACTTATTTGATATGGGGCTAGATACAAGACATGA
* * *
20876419 TGTCGATACGGGAATTGAATGTTATCCTTTTGCTGAACAAAACTTGGATGAAAATATCTCAAGTA
1 TGTTGATACGGGAACTGAATGTTATCCTTTTGCTGAACAAAACTTGGATGAAAATATCTCCAGTA
* * * ** *
20876484 CCTACGCTCAGTGAATCCGCGATGATGTTAATAAAGACATTTATAAACCATGATTTATAATCTAT
66 CCTACGCTCAGTGGATCCGCGATGATGTTAATGAAGACATTTATGAACCATGATGGATCATCTAT
* * **
20876549 ATGTTATAATTCAAGTGTTTATGAC--AATATAGTAAATGATTGTATGTAATTAATGTCGCATTC
131 ATTTTGTAATTTGAGTGTTTATGACATAATATAGTAAATGATTGTATGTAATTAATGTCGCATTC
* * *
20876612 ACTATTATATATTTATTATATTGTAAATCATACATTATTTTTTGATTTAATTAAATCGATATGTT
196 ACTATTGTATATTTATTGTATTGTAAATCATACATTATCTTTTGATTTAATTAAATCGATATGTT
* * * *
20876677 ATTTTTGTATCGTTGGTTATGATAATTTAACTTCTCACTGTCTTTATATTTGTTCTAAAGTTTTA
261 CTTTTTGTATCGTAGGTTATGATAAGTTAACTTCTCAATGTCTTTATATTTGTTCTAAAGTTTTA
* **
20876742 TCTTTTATATGTTTGCTTTTATGATGCAGATAAGCTACAATGTGGAGGAGTAGATTGAAAGAAAT
326 TCTTTTATATATTCACTTTTATGATGCAGATAAGCTACAATGTGGAGGAGTAGATTGAAAGAAAT
* * * * *
20876807 ACATATGAAAAATATTAGTTCAGAATCATCTACGACACCTATTGATATTGATGATGGTTTGAATC
391 ACATATAAAAAATATTAGTTCAGAACCATCTGCGGCACCTATTGATATTGATGATGGTCTGAATC
* * * *
20876872 CATTGGAAGGGAATG-A---A---T-GAACCTAACTCAGTCACTTCTAACCCTTCAACTAATATT
456 CTTTGAAAGGGAATGAACGTACTGTCGAATCTAACTCAGTCACTTCTAACCCTTCAACTGATATT
*
20876929 AGATCT-GACAATACAAGAGGTCTA-GTATTAGATAGTATCCCGTCAATTGATTATGCTTTAAAT
521 GGATCTAG-CAATACAAGAGGTCTAGGT-TTAGATAGTATCCCGTCAATTGATTATGCTTTAAAT
* *
20876992 TTGAATATCAACATTGGACAACAACTCATCGATGAACCTTATATTTTTTCATCTCAAGTTAAATA
584 TTGAATATCAACACTGGACAACAACTCATCGATGAACCTTATATTTTTTCATCTCAAGTTAAACA
*
20877057 AGTTTTTTATTATGAAGATCCCAAAGAATTGGGTTGGTTTGTTGTTGTTCGAAACACACCTAGAA
649 AGTTTTTTATTCTGAAGATCCCAAAGAATTGGGTTGGTTTGTTGTTGTTCGAAACACACCTAGAA
* * *
20877122 ACTTATTTGATATGGAGCTAGATATAAGACAGGA
714 ACTTATTTGATATGGGGCTAGATACAAGACATGA
* *
20877156 TGTTGATACGGGAATTGAATGTTATCCTTTTGCTGAACAAAACTTGGATGAAAATATCTCCAATA
1 TGTTGATACGGGAACTGAATGTTATCCTTTTGCTGAACAAAACTTGGATGAAAATATCTCCAGTA
* * * * *
20877221 CCTACTCTCAATGGATCCACAATGATGTTAATGAAGACATTTATGAACCATGATGGATCATTTAT
66 CCTACGCTCAGTGGATCCGCGATGATGTTAATGAAGACATTTATGAACCATGATGGATCATCTAT
*
20877286 ATTTTGTAATTTGAGTGTTTATGACATAATATGGTAAATGATTGTATGTAATTAATGTCGCATTC
131 ATTTTGTAATTTGAGTGTTTATGACATAATATAGTAAATGATTGTATGTAATTAATGTCGCATTC
* *
20877351 ACTATTGTATATTTATTGTATTGTAAGTCTTACATTATCTTTTGATTTAATTAAATCGATATGTT
196 ACTATTGTATATTTATTGTATTGTAAATCATACATTATCTTTTGATTTAATTAAATCGATATGTT
*
20877416 CTTTTTGTATCGTAGTTTATGATAAGTTAACTTCTCAATGTCTTTATATTTGTTCTAAAGTTTTA
261 CTTTTTGTATCGTAGGTTATGATAAGTTAACTTCTCAATGTCTTTATATTTGTTCTAAAGTTTTA
* * * *
20877481 TCTTTTATTTATTCACTTTTATGATTCAGATAAGCTACAATATGGATGAGTAGATTGAAAGAAAT
326 TCTTTTATATATTCACTTTTATGATGCAGATAAGCTACAATGTGGAGGAGTAGATTGAAAGAAAT
* * * * * * *
20877546 ACATATCAGAAATATTAGTTTCAGAACCATTTGTGACACCTATTGATTTTGATGATGGTCCGAAT
391 ACATATAAAAAATATTAG-TTCAGAACCATCTGCGGCACCTATTGATATTGATGATGGTCTGAAT
* * * * * *
20877611 CCTTTGAAAGAGAATGAACATACTATCGGATCTAACTCAATCACTTCTAGCCCTTCAACTGATAT
455 CCTTTGAAAGGGAATGAACGTACTGTCGAATCTAACTCAGTCACTTCTAACCCTTCAACTGATAT
* * * *
20877676 TAGATCT-GGAATACAAGAGGTCTAGGTTTAGATAGTATCCCGTAAATTGATTATACTTTAAATT
520 TGGATCTAGCAATACAAGAGGTCTAGGTTTAGATAGTATCCCGTCAATTGATTATGCTTTAAATT
* * *
20877740 TTAATATCAACACTGGAAAACAACTAATCGATGAACCTTATATGTTTTT-ATCTCAAGTTAAACA
585 TGAATATCAACACTGGACAACAACTCATCGATGAACCTTATAT-TTTTTCATCTCAAGTTAAACA
* * * *
20877804 AGTTTTTTTATTCTGAAGATCCCAAAGAATTGGGTTGGTTTGTTATTGTTTGAAATACACCTAAA
649 AG-TTTTTTATTCTGAAGATCCCAAAGAATTGGGTTGGTTTGTTGTTGTTCGAAACACACCTAGA
* *
20877869 AATTTATTTGATATGAGGCTAGATACAAGACATGA
713 AACTTATTTGATATGGGGCTAGATACAAGACATGA
* * * *
20877904 TGTTGATATGGGAACTGAATATTATCCTTTTGCTGAACAAAATTTGGATGAAAATATCTTCAGTA
1 TGTTGATACGGGAACTGAATGTTATCCTTTTGCTGAACAAAACTTGGATGAAAATATCTCCAGTA
* * * * * *
20877969 CCTATGTTCAGTGGATCTGTGATGATTTTAATGAAGACATTTATGAACCATGATGGATCATTTAT
66 CCTACGCTCAGTGGATCCGCGATGATGTTAATGAAGACATTTATGAACCATGATGGATCATCTAT
** * * *
20878034 ATTTCATAATTCGAGTGTTTATGACATAACATAGTAAATGATTGTATGTAAATAATGTCGCATTC
131 ATTTTGTAATTTGAGTGTTTATGACATAATATAGTAAATGATTGTATGTAATTAATGTCGCATTC
* * *
20878099 AGTATTGTATATTTATTTTATTATAAATCATACATTATCTTTTGATTTAATTAAATCGATATGTT
196 ACTATTGTATATTTATTGTATTGTAAATCATACATTATCTTTTGATTTAATTAAATCGATATGTT
*
20878164 CTTTTTGTATCGTAGGTTATGATAAGTTAACTTCTCAACGTCTTTATATTTGTTCTAAAGTTTTA
261 CTTTTTGTATCGTAGGTTATGATAAGTTAACTTCTCAATGTCTTTATATTTGTTCTAAAGTTTTA
* *
20878229 TCTTTTATATATTCGCTTTTATGATGCAGATAAGCTACAATGTGGAGGAGTAGAATGAAAGAAAT
326 TCTTTTATATATTCACTTTTATGATGCAGATAAGCTACAATGTGGAGGAGTAGATTGAAAGAAAT
* * * *
20878294 ACATATAAAAAATATTTGTTCAGAACCATCTACGGCACTTGTTGATATTGATGATGGTCTGAATC
391 ACATATAAAAAATATTAGTTCAGAACCATCTGCGGCACCTATTGATATTGATGATGGTCTGAATC
* * * *
20878359 CTTTAAAAGGGAATGAATGTACTGTCGGATCTAACTCAGTAACTTCTAACCCTTCAACTGATATT
456 CTTTGAAAGGGAATGAACGTACTGTCGAATCTAACTCAGTCACTTCTAACCCTTCAACTGATATT
* * * * * *
20878424 GGATCTAGCAATATAGGAGGTTTAGGTTTCGATAGTATCCTGTCAATTAATTATGCTTTAAATTT
521 GGATCTAGCAATACAAGAGGTCTAGGTTTAGATAGTATCCCGTCAATTGATTATGCTTTAAATTT
20878489 GAAT
586 GAAT
20878493 GTATGTATCA
Statistics
Matches: 8565, Mismatches: 916, Indels: 115
0.89 0.10 0.01
Matches are distributed among these distances:
736 3 0.00
737 374 0.04
738 1 0.00
739 231 0.03
740 52 0.01
741 2 0.00
742 1 0.00
743 521 0.06
744 339 0.04
745 499 0.06
746 1138 0.13
747 3499 0.41
748 1901 0.22
749 4 0.00
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.38
Consensus pattern (747 bp):
TGTTGATACGGGAACTGAATGTTATCCTTTTGCTGAACAAAACTTGGATGAAAATATCTCCAGTA
CCTACGCTCAGTGGATCCGCGATGATGTTAATGAAGACATTTATGAACCATGATGGATCATCTAT
ATTTTGTAATTTGAGTGTTTATGACATAATATAGTAAATGATTGTATGTAATTAATGTCGCATTC
ACTATTGTATATTTATTGTATTGTAAATCATACATTATCTTTTGATTTAATTAAATCGATATGTT
CTTTTTGTATCGTAGGTTATGATAAGTTAACTTCTCAATGTCTTTATATTTGTTCTAAAGTTTTA
TCTTTTATATATTCACTTTTATGATGCAGATAAGCTACAATGTGGAGGAGTAGATTGAAAGAAAT
ACATATAAAAAATATTAGTTCAGAACCATCTGCGGCACCTATTGATATTGATGATGGTCTGAATC
CTTTGAAAGGGAATGAACGTACTGTCGAATCTAACTCAGTCACTTCTAACCCTTCAACTGATATT
GGATCTAGCAATACAAGAGGTCTAGGTTTAGATAGTATCCCGTCAATTGATTATGCTTTAAATTT
GAATATCAACACTGGACAACAACTCATCGATGAACCTTATATTTTTTCATCTCAAGTTAAACAAG
TTTTTTATTCTGAAGATCCCAAAGAATTGGGTTGGTTTGTTGTTGTTCGAAACACACCTAGAAAC
TTATTTGATATGGGGCTAGATACAAGACATGA
Found at i:20881191 original size:34 final size:34
Alignment explanation
Indices: 20881153--20881286 Score: 144
Period size: 34 Copynumber: 3.9 Consensus size: 34
20881143 CTTTGACACA
* *
20881153 CCATTAA-ATTAGTGATATTTTTCATATACAAATG
1 CCATTAATA-TAGTGACATTTTTCAGATACAAATG
* * *
20881187 CCATTAATGTAGTGGCATTTTTCAGATACAAATA
1 CCATTAATATAGTGACATTTTTCAGATACAAATG
* * * * *
20881221 TCGTTAATTTAGTGGCATTTTTCATATACAAATG
1 CCATTAATATAGTGACATTTTTCAGATACAAATG
* *
20881255 CCACTAATATAATGACATTTTTCAGATACAAA
1 CCATTAATATAGTGACATTTTTCAGATACAAA
20881287 CGTCGCTAAT
Statistics
Matches: 82, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
34 82 1.00
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (34 bp):
CCATTAATATAGTGACATTTTTCAGATACAAATG
Found at i:20881233 original size:68 final size:68
Alignment explanation
Indices: 20881156--20881286 Score: 199
Period size: 68 Copynumber: 1.9 Consensus size: 68
20881146 TGACACACCA
* * * * *
20881156 TTAAATTAGTGATATTTTTCATATACAAATGCCATTAATGTAGTGGCATTTTTCAGATACAAATA
1 TTAAATTAGTGACATTTTTCATATACAAATGCCACTAATATAATGACATTTTTCAGATACAAATA
20881221 TCG
66 TCG
* *
20881224 TTAATTTAGTGGCATTTTTCATATACAAATGCCACTAATATAATGACATTTTTCAGATACAAA
1 TTAAATTAGTGACATTTTTCATATACAAATGCCACTAATATAATGACATTTTTCAGATACAAA
20881287 CGTCGCTAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
68 56 1.00
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (68 bp):
TTAAATTAGTGACATTTTTCATATACAAATGCCACTAATATAATGACATTTTTCAGATACAAATA
TCG
Found at i:20881296 original size:34 final size:34
Alignment explanation
Indices: 20881169--20881300 Score: 120
Period size: 34 Copynumber: 3.9 Consensus size: 34
20881159 AATTAGTGAT
* * ** * * *
20881169 ATTTTTCATATACAAATGCCATTAATGTAGTGGC
1 ATTTTTCAGATACAAATGTCGCTAATATAATGAC
* * * * *
20881203 ATTTTTCAGATACAAATATCGTTAATTTAGTGGC
1 ATTTTTCAGATACAAATGTCGCTAATATAATGAC
* * *
20881237 ATTTTTCATATACAAATGCCACTAATATAATGAC
1 ATTTTTCAGATACAAATGTCGCTAATATAATGAC
*
20881271 ATTTTTCAGATACAAACGTCGCTAATATAA
1 ATTTTTCAGATACAAATGTCGCTAATATAA
20881301 CAACGTTGTA
Statistics
Matches: 81, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 81 1.00
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (34 bp):
ATTTTTCAGATACAAATGTCGCTAATATAATGAC
Found at i:20885244 original size:22 final size:21
Alignment explanation
Indices: 20885202--20885246 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
20885192 CATTTCCTTA
* *
20885202 TTTTGGTATTTGATTTTATTT
1 TTTTGGTATTTGACTTAATTT
*
20885223 TTTTGTGTATTTTACTTAATTT
1 TTTTG-GTATTTGACTTAATTT
20885245 TT
1 TT
20885247 ATGCTATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.16, C:0.02, G:0.11, T:0.71
Consensus pattern (21 bp):
TTTTGGTATTTGACTTAATTT
Found at i:20888508 original size:22 final size:24
Alignment explanation
Indices: 20888466--20888513 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
20888456 ATTCATAGTT
20888466 TAAGTATCACATTAAATATATTTA
1 TAAGTATCACATTAAATATATTTA
20888490 TAAGTATCACATTAAATAT-TTTA
1 TAAGTATCACATTAAATATATTTA
20888513 T
1 T
20888514 TATAATTTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 5 0.21
24 19 0.79
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.44
Consensus pattern (24 bp):
TAAGTATCACATTAAATATATTTA
Found at i:20891351 original size:24 final size:24
Alignment explanation
Indices: 20891324--20891369 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
20891314 CCAATTAAAA
*
20891324 TAAA-TAATATTAAATATATAAATT
1 TAAATTAAT-TTAAATACATAAATT
20891348 TAAATTAATTTAAATACATAAA
1 TAAATTAATTTAAATACATAAA
20891370 AATAATACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (24 bp):
TAAATTAATTTAAATACATAAATT
Found at i:20895994 original size:21 final size:21
Alignment explanation
Indices: 20895969--20896011 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
20895959 TTTGAGATTT
* *
20895969 TTTTTTTTATTTTAGAAAATA
1 TTTTTTATATTTTAAAAAATA
20895990 TTTTTTATATTTTAAAAAATA
1 TTTTTTATATTTTAAAAAATA
20896011 T
1 T
20896012 ATTTGATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (21 bp):
TTTTTTATATTTTAAAAAATA
Found at i:20897215 original size:20 final size:19
Alignment explanation
Indices: 20897172--20897217 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
20897162 GATTAAAATT
* *
20897172 ATTTTTTAATATTTATATA
1 ATTTTTAAATATTAATATA
20897191 A--TTTAAATTATTAATATA
1 ATTTTTAAA-TATTAATATA
20897209 ATTTTTAAA
1 ATTTTTAAA
20897218 AATATAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
17 5 0.23
18 10 0.45
19 1 0.05
20 6 0.27
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTTTTAAATATTAATATA
Found at i:20902487 original size:2 final size:2
Alignment explanation
Indices: 20902480--20902504 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
20902470 AGCTTTTTGA
20902480 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
20902505 CTTATCACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:20908274 original size:16 final size:16
Alignment explanation
Indices: 20908255--20908292 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
20908245 AATTATTTAA
20908255 TTATAT-ATTTATATAT
1 TTATATAATTT-TATAT
*
20908271 TTATTTAATTTTATAT
1 TTATATAATTTTATAT
20908287 TTATAT
1 TTATAT
20908293 TAAAAAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
TTATATAATTTTATAT
Found at i:20908274 original size:24 final size:24
Alignment explanation
Indices: 20908247--20908292 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
20908237 TTTTAATTAA
20908247 TTATTTAATTATATATTTATATAT
1 TTATTTAATTATATATTTATATAT
*
20908271 TTATTTAATTTTATATTTATAT
1 TTATTTAATTATATATTTATAT
20908293 TAAAAAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (24 bp):
TTATTTAATTATATATTTATATAT
Found at i:20908287 original size:12 final size:12
Alignment explanation
Indices: 20908248--20908289 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
20908238 TTTAATTAAT
*
20908248 TATTTAATTATA
1 TATTTAATTTTA
*
20908260 TATTTATATATT-
1 TATTTA-ATTTTA
20908272 TATTTAATTTTA
1 TATTTAATTTTA
20908284 TATTTA
1 TATTTA
20908290 TATTAAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
11 4 0.16
12 18 0.72
13 3 0.12
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
TATTTAATTTTA
Found at i:20920671 original size:17 final size:18
Alignment explanation
Indices: 20920649--20920684 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
20920639 TTTTTTTGTG
20920649 AAATTAATATTTCA-AAA
1 AAATTAATATTTCACAAA
*
20920666 AAATTAATCTTTCACAAA
1 AAATTAATATTTCACAAA
20920684 A
1 A
20920685 TTCTCGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (18 bp):
AAATTAATATTTCACAAA
Found at i:20920887 original size:22 final size:21
Alignment explanation
Indices: 20920858--20920905 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
20920848 CGAAATTAAT
*
20920858 AAAATATT-TCTTTT-AAATA
1 AAAATATTATTTTTTAAAATA
20920877 AAAATATTATTTTTTAAAATA
1 AAAATATTATTTTTTAAAATA
*
20920898 TAAATATT
1 AAAATATT
20920906 TAAATATAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 8 0.32
20 5 0.20
21 12 0.48
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (21 bp):
AAAATATTATTTTTTAAAATA
Found at i:20921429 original size:24 final size:26
Alignment explanation
Indices: 20921397--20921456 Score: 72
Period size: 24 Copynumber: 2.4 Consensus size: 26
20921387 TCACTCGTTT
20921397 AAGCTCGATTAATATA-T-AAAAAAA
1 AAGCTCGATTAATATACTCAAAAAAA
** *
20921421 AAGCTCGATTTTTATACTCGAAAAAA
1 AAGCTCGATTAATATACTCAAAAAAA
20921447 AA-CTCGATTA
1 AAGCTCGATTA
20921457 TTCGAGCTCG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 14 0.47
25 8 0.27
26 8 0.27
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.28
Consensus pattern (26 bp):
AAGCTCGATTAATATACTCAAAAAAA
Found at i:20921466 original size:26 final size:26
Alignment explanation
Indices: 20921415--20921467 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
20921405 TTAATATATA
* *
20921415 AAAAAAAAGCTCGATTTTTATACTCG
1 AAAAAAAAGCTCGATTATTAGACTCG
*
20921441 AAAAAAAA-CTCGATTATTCGAGCTCG
1 AAAAAAAAGCTCGATTATTAGA-CTCG
20921467 A
1 A
20921468 GATCTTTTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.43, C:0.17, G:0.13, T:0.26
Consensus pattern (26 bp):
AAAAAAAAGCTCGATTATTAGACTCG
Found at i:20921535 original size:6 final size:6
Alignment explanation
Indices: 20921524--20921574 Score: 57
Period size: 6 Copynumber: 8.5 Consensus size: 6
20921514 TCAAGATAAC
* * * * *
20921524 AACAAT AACAAT AACAAC AACAAT AACAAC AACAAC AATAAT AATAAT
1 AACAAT AACAAT AACAAT AACAAT AACAAT AACAAT AACAAT AACAAT
20921572 AAC
1 AAC
20921575 TTACACAACA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.67, C:0.20, G:0.00, T:0.14
Consensus pattern (6 bp):
AACAAT
Found at i:20921539 original size:15 final size:15
Alignment explanation
Indices: 20921519--20921574 Score: 64
Period size: 15 Copynumber: 3.9 Consensus size: 15
20921509 TATTTTCAAG
20921519 ATAACAACAATAACA
1 ATAACAACAATAACA
20921534 ATAACAAC---AACA
1 ATAACAACAATAACA
*
20921546 ATAACAACAACAACA
1 ATAACAACAATAACA
* *
20921561 ATAATAATAATAAC
1 ATAACAACAATAAC
20921575 TTACACAACA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
12 12 0.34
15 23 0.66
ACGTcount: A:0.66, C:0.20, G:0.00, T:0.14
Consensus pattern (15 bp):
ATAACAACAATAACA
Found at i:20921542 original size:3 final size:3
Alignment explanation
Indices: 20921521--20921561 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
20921511 TTTTCAAGAT
* * *
20921521 AAC AAC AAT AAC AAT AAC AAC AAC AAT AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
20921562 TAATAATAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.07
Consensus pattern (3 bp):
AAC
Found at i:20921544 original size:18 final size:18
Alignment explanation
Indices: 20921521--20921574 Score: 81
Period size: 18 Copynumber: 3.0 Consensus size: 18
20921511 TTTTCAAGAT
20921521 AACAACAATAACAATAAC
1 AACAACAATAACAATAAC
*
20921539 AACAACAATAACAACAAC
1 AACAACAATAACAATAAC
* *
20921557 AACAATAATAATAATAAC
1 AACAACAATAACAATAAC
20921575 TTACACAACA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.67, C:0.20, G:0.00, T:0.13
Consensus pattern (18 bp):
AACAACAATAACAATAAC
Found at i:20922842 original size:19 final size:20
Alignment explanation
Indices: 20922805--20922850 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 20
20922795 GAACACCGGT
*
20922805 GCCGGATTCTGGAAAATTTC
1 GCCGGAATCTGGAAAATTTC
20922825 GCCGGAATCTGG-AAATTTC
1 GCCGGAATCTGGAAAATTTC
20922844 GCCGGAA
1 GCCGGAA
20922851 GATCGCCGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 14 0.56
20 11 0.44
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (20 bp):
GCCGGAATCTGGAAAATTTC
Found at i:20922932 original size:31 final size:31
Alignment explanation
Indices: 20922894--20922952 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
20922884 TGGGCTGGTC
* *
20922894 GCCGAAAACTT-AAATGTTCGCCGGAATTGTT
1 GCCGAAAAATTCAAAT-TTCGCCGAAATTGTT
20922925 GCCGAAAAATTCAAATTTCGCCGAAATT
1 GCCGAAAAATTCAAATTTCGCCGAAATT
20922953 TTCGTCGGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 21 0.84
32 4 0.16
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (31 bp):
GCCGAAAAATTCAAATTTCGCCGAAATTGTT
Found at i:20923469 original size:16 final size:16
Alignment explanation
Indices: 20923385--20923552 Score: 54
Period size: 16 Copynumber: 10.8 Consensus size: 16
20923375 TAGATAAGTA
*
20923385 AAAATACAAAAATGAAT
1 AAAATACATAAAT-AAT
* *
20923402 AAAATAAAAAAGATAA-
1 AAAATACATAA-ATAAT
* *
20923418 AAAATATATACAT-AT
1 AAAATACATAAATAAT
* * *
20923433 -ATATACAT-ATTAGT
1 AAAATACATAAATAAT
20923447 AATAATACATAAATAAT
1 AA-AATACATAAATAAT
*
20923464 AAAATACACATAAATATT
1 AAAAT--ACATAAATAAT
*
20923482 AACAA-A-AAAAATAA-
1 AA-AATACATAAATAAT
* *
20923496 ATAAATATATACAT-AT
1 A-AAATACATAAATAAT
*
20923512 ATTAATACAT-AATAAT
1 A-AAATACATAAATAAT
20923528 --AATA-ATAAATAAT
1 AAAATACATAAATAAT
*
20923541 ACAATACATAAA
1 AAAATACATAAA
20923553 ATACAAAAGA
Statistics
Matches: 113, Mismatches: 20, Indels: 37
0.66 0.12 0.22
Matches are distributed among these distances:
12 2 0.02
13 11 0.10
14 11 0.10
15 18 0.16
16 37 0.33
17 18 0.16
18 14 0.12
19 2 0.02
ACGTcount: A:0.65, C:0.07, G:0.02, T:0.27
Consensus pattern (16 bp):
AAAATACATAAATAAT
Found at i:20923556 original size:37 final size:37
Alignment explanation
Indices: 20923414--20923557 Score: 112
Period size: 37 Copynumber: 3.7 Consensus size: 37
20923404 AATAAAAAAG
* * *
20923414 ATAAAAAATATATACATATATATACATATTAGTAATAATA
1 ATAAATAATAAATACATATAAATACATA--A-TAATAATA
* * * * *
20923454 CATAAATAATAAAATACACATAAATA-TTAACAAAAAAA
1 -ATAAATAAT-AAATACATATAAATACATAATAATAATA
*
20923492 ATAAATAAATATATACATATATTAATACATAATAATAATA
1 ATAAAT-AATAAATACATATA--AATACATAATAATAATA
20923532 ATAAATAATACAATACATA-AAATACA
1 ATAAATAATA-AATACATATAAATACA
20923558 AAAGAAGAAG
Statistics
Matches: 82, Mismatches: 15, Indels: 16
0.73 0.13 0.14
Matches are distributed among these distances:
37 21 0.26
38 8 0.10
39 10 0.12
40 21 0.26
41 10 0.12
42 12 0.15
ACGTcount: A:0.62, C:0.08, G:0.01, T:0.29
Consensus pattern (37 bp):
ATAAATAATAAATACATATAAATACATAATAATAATA
Found at i:20923583 original size:81 final size:78
Alignment explanation
Indices: 20923385--20923583 Score: 176
Period size: 79 Copynumber: 2.5 Consensus size: 78
20923375 TAGATAAGTA
* * *
20923385 AAAATACA-A-AAATGAATAAAATAAAAAAGATAAAAAATATATACATATATATACATATTAGTA
1 AAAATACACATAAAT-AA-AAAAAAAAAAAAAAAAAAAATATATACATATATATACATA-TAGTA
20923448 ATAATACATAAATAAT
63 ATAATACATAAATAAT
** * * *
20923464 AAAATACACATAAATATTAACAAAAAAAATAAATAAATATATACATATATTAATACATA-A-TAA
1 AAAATACACATAAATAAAAAAAAAAAAAAAAAAAAAATATATACATATA-T-ATACATATAGTAA
20923527 TAATA-ATAAATAAT
64 TAATACATAAATAAT
* *
20923541 ACAATACATA-AAATACAAAAGAAGAAGAAAAGAAAAAAAAATA
1 AAAATACACATAAATA-AAAA-AA-AA-AAAA-AAAAAAAAATA
20923584 CAAGATAAAA
Statistics
Matches: 96, Mismatches: 15, Indels: 16
0.76 0.12 0.13
Matches are distributed among these distances:
76 5 0.05
77 19 0.20
78 9 0.09
79 36 0.38
80 7 0.07
81 20 0.21
ACGTcount: A:0.67, C:0.06, G:0.04, T:0.24
Consensus pattern (78 bp):
AAAATACACATAAATAAAAAAAAAAAAAAAAAAAAAATATATACATATATATACATATAGTAATA
ATACATAAATAAT
Found at i:20923585 original size:77 final size:76
Alignment explanation
Indices: 20923407--20923585 Score: 168
Period size: 77 Copynumber: 2.3 Consensus size: 76
20923397 TGAATAAAAT
20923407 AAAAAAGATAAAAAATATATACATATATATACATATTAGTAATAATACATAAATAATAAAATACA
1 AAAAAAGA-AAAAAA-A-ATACATATATATACATA-TAGTAATAATACATAAATAATAAAATACA
**
20923472 CATAAATATTAACAA
62 CATAAATAAAAACAA
* * *
20923487 AAAAAATAAATAAATATATACATATATTAATACATA-A-TAATAATA-ATAAATAATACAATACA
1 AAAAAAGAAA-AAA-AAATACATATA-T-ATACATATAGTAATAATACATAAATAATAAAATACA
* *
20923549 TA-AAATACAAAAGAA
62 CATAAATA-AAAACAA
20923564 GAAGAAAAGAAAAAAAAATACA
1 -AA-AAAAGAAAAAAAAATACA
20923586 AGATAAAATT
Statistics
Matches: 83, Mismatches: 9, Indels: 17
0.76 0.08 0.16
Matches are distributed among these distances:
76 5 0.06
77 27 0.33
78 13 0.16
79 19 0.23
80 11 0.13
81 8 0.10
ACGTcount: A:0.66, C:0.07, G:0.03, T:0.24
Consensus pattern (76 bp):
AAAAAAGAAAAAAAAATACATATATATACATATAGTAATAATACATAAATAATAAAATACACATA
AATAAAAACAA
Found at i:20936266 original size:72 final size:73
Alignment explanation
Indices: 20936158--20936314 Score: 185
Period size: 72 Copynumber: 2.2 Consensus size: 73
20936148 CAACTCGTAG
* * *
20936158 TTCAATCCCAGTTATCTCCAATATTTGGCTCGTGGTTTAATCTTGA-TATTT-TATTATTTTCC-
1 TTCAATCCCAGTTATCTCCAATATTTGACTCATGGTTTAATCTCGATTATTTCTATTA--TTCCT
20936220 TGACTTACGA
64 TGACTTACGA
* * ** *
20936230 TTCAGTCCTAGTTATCTTTAATCTTTGACTCATGGTTTAATCTCGATTATTTCTATTATTCCTTG
1 TTCAATCCCAGTTATCTCCAATATTTGACTCATGGTTTAATCTCGATTATTTCTATTATTCCTTG
*
20936295 ACTTACGG
66 ACTTACGA
*
20936303 TTTAATCCCAGT
1 TTCAATCCCAGT
20936315 CTCTTTTATC
Statistics
Matches: 70, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
72 42 0.60
73 23 0.33
74 5 0.07
ACGTcount: A:0.22, C:0.20, G:0.12, T:0.46
Consensus pattern (73 bp):
TTCAATCCCAGTTATCTCCAATATTTGACTCATGGTTTAATCTCGATTATTTCTATTATTCCTTG
ACTTACGA
Found at i:20936442 original size:36 final size:37
Alignment explanation
Indices: 20936374--20936457 Score: 98
Period size: 36 Copynumber: 2.3 Consensus size: 37
20936364 TGGCTCGTGG
* *
20936374 TTTAATCTCGATCATTTCATTATTTCTCTGACTTATGA
1 TTTAATCCCAATCATTT-ATTATTTCTCTGACTTATGA
* * *
20936412 TTTAATCCCAATCATTT-TTATTTTTTTGACTTATGG
1 TTTAATCCCAATCATTTATTATTTCTCTGACTTATGA
*
20936448 TTTAGTCCCA
1 TTTAATCCCA
20936458 GCCGTCGTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
36 25 0.62
38 15 0.38
ACGTcount: A:0.23, C:0.18, G:0.08, T:0.51
Consensus pattern (37 bp):
TTTAATCCCAATCATTTATTATTTCTCTGACTTATGA
Found at i:20936993 original size:34 final size:33
Alignment explanation
Indices: 20936945--20937108 Score: 152
Period size: 34 Copynumber: 4.8 Consensus size: 33
20936935 TCGATTGTTG
*
20936945 TTATCCTCTGACTCACGGTTTAATCTCGATCTCT
1 TTATTCTCTGACTCACGGTTTAATC-CGATCTCT
* *
20936979 TTATTCTCTGACTCATGATTTAATCCCGATCTCT
1 TTATTCTCTGACTCACGGTTTAAT-CCGATCTCT
*
20937013 TTATTCT-TCGATTCACGGTTTAATCCTGATCTCT
1 TTATTCTCT-GACTCACGGTTTAATCC-GATCTCT
* * *
20937047 TTATTCTTTGATTCACGGCTTAATCCTGATC-CT
1 TTATTCTCTGACTCACGGTTTAATCC-GATCTCT
* **
20937080 TAGTATTTTTCTGACTCGTGGTTTAATCC
1 T--TA-TTCTCTGACTCACGGTTTAATCC
20937109 CGGTCTCCTT
Statistics
Matches: 110, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
33 6 0.05
34 83 0.75
35 4 0.04
36 17 0.15
ACGTcount: A:0.18, C:0.24, G:0.12, T:0.45
Consensus pattern (33 bp):
TTATTCTCTGACTCACGGTTTAATCCGATCTCT
Found at i:20936998 original size:135 final size:134
Alignment explanation
Indices: 20936624--20937004 Score: 458
Period size: 135 Copynumber: 2.8 Consensus size: 134
20936614 TGACTCACTG
* * *
20936624 TTCAATCCCGATCTCTTTAATTCAAAATTGTAATTTAATCTCGATTGTTGTTATCCTCTAACTCG
1 TTCAATCCCGATCTCTTTAATTCAAAATTGTAGTTTAATCTCGATTGTTGTTATCCTCTGACTCA
* * *
20936689 TGGTTTAATCCCAGTCGT-TTTCATTTTTTAACTTGTGATTTAATCCAAGTTAATGTTATTTCGA
66 TGGTTTAATCCGA-TC-TCTTT-ATTTTCTAACTTGTGATTTAATCCAAGTTAACGTTATTTCGA
*
20936753 CTCGCGG
128 CTCGCGA
* * * * * *
20936760 TTCAATCTCGACCTCTTTAATTTAAAATTGTGGTTTAATCTTGATTGTTGTTATCCTTTGACTCA
1 TTCAATCCCGATCTCTTTAATTCAAAATTGTAGTTTAATCTCGATTGTTGTTATCCTCTGACTCA
* * * * * *
20936825 TGGTTTAATCCTGGTCTCCTTATTTTCTTACTTGTGATTCAATCCAAGTTGACGTTATTTTGACT
66 TGGTTTAATCC-GATCTCTTTATTTTCTAACTTGTGATTTAATCCAAGTTAACGTTATTTCGACT
20936890 CGCGA
130 CGCGA
* * * *
20936895 TTTAGTCCCGATCTCTTTAATTCAAAATCGTAGTTTAGTCTCGATTGTTGTTATCCTCTGACTCA
1 TTCAATCCCGATCTCTTTAATTCAAAATTGTAGTTTAATCTCGATTGTTGTTATCCTCTGACTCA
* * * **
20936960 CGGTTTAATCTCGATCTCTTTATTCTCTGACTCATGATTTAATCC
66 TGGTTTAATC-CGATCTCTTTATTTTCTAACTTGTGATTTAATCC
20937005 CGATCTCTTT
Statistics
Matches: 205, Mismatches: 37, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
135 133 0.65
136 72 0.35
ACGTcount: A:0.22, C:0.20, G:0.14, T:0.45
Consensus pattern (134 bp):
TTCAATCCCGATCTCTTTAATTCAAAATTGTAGTTTAATCTCGATTGTTGTTATCCTCTGACTCA
TGGTTTAATCCGATCTCTTTATTTTCTAACTTGTGATTTAATCCAAGTTAACGTTATTTCGACTC
GCGA
Found at i:20937459 original size:12 final size:12
Alignment explanation
Indices: 20937442--20937479 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
20937432 TCAATTTAAT
*
20937442 ATAATAATTTTG
1 ATAATAATATTG
*
20937454 ATAATAATATTA
1 ATAATAATATTG
20937466 ATAATAATATTG
1 ATAATAATATTG
20937478 AT
1 AT
20937480 TTAATTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (12 bp):
ATAATAATATTG
Found at i:20938535 original size:18 final size:18
Alignment explanation
Indices: 20938513--20938561 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
20938503 AAATTTTTTA
* *
20938513 ATTTTTTCTATATT-ATT
1 ATTTTTTTTATATTAAGT
*
20938530 ATTTTTTTTATTTTAAGT
1 ATTTTTTTTATATTAAGT
20938548 ATTTTTTTTATATT
1 ATTTTTTTTATATT
20938562 TATGCATGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
17 12 0.44
18 15 0.56
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (18 bp):
ATTTTTTTTATATTAAGT
Found at i:20938692 original size:21 final size:21
Alignment explanation
Indices: 20938666--20938705 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
20938656 TAAAAATGCT
*
20938666 TAAAAAATAATAATTATAACC
1 TAAAAAATAATAATAATAACC
20938687 TAAAAAATAATAATAATAA
1 TAAAAAATAATAATAATAA
20938706 TAAAATTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.28
Consensus pattern (21 bp):
TAAAAAATAATAATAATAACC
Found at i:20938996 original size:16 final size:15
Alignment explanation
Indices: 20938977--20939122 Score: 95
Period size: 16 Copynumber: 9.7 Consensus size: 15
20938967 CTAGGATTCT
20938977 AAAACCCCTAAAATCC
1 AAAA-CCCTAAAATCC
* *
20938993 AAAATCTCTTAAATCC
1 AAAA-CCCTAAAATCC
* *
20939009 AAACCCCCTAAAATTC
1 AAA-ACCCTAAAATCC
*
20939025 GAAACTCCTAAAATCC
1 AAAAC-CCTAAAATCC
*
20939041 -AAACCCTTAAAT-C
1 AAAACCCTAAAATCC
* * *
20939054 AAAACCCCAAACTTC
1 AAAACCCTAAAATCC
**
20939069 -AAACTTTAAAA-CC
1 AAAACCCTAAAATCC
20939082 AAAACCCTAAAATCTC
1 AAAACCCTAAAATC-C
* *
20939098 CAAACTCTAAAAT-C
1 AAAACCCTAAAATCC
20939112 AAAACCCTAAA
1 AAAACCCTAAA
20939123 CCTTTCATAC
Statistics
Matches: 98, Mismatches: 25, Indels: 16
0.71 0.18 0.12
Matches are distributed among these distances:
13 2 0.02
14 42 0.43
15 7 0.07
16 47 0.48
ACGTcount: A:0.49, C:0.32, G:0.01, T:0.19
Consensus pattern (15 bp):
AAAACCCTAAAATCC
Found at i:20939015 original size:31 final size:31
Alignment explanation
Indices: 20938978--20939122 Score: 94
Period size: 30 Copynumber: 4.9 Consensus size: 31
20938968 TAGGATTCTA
*
20938978 AAACCCCTAAAATCCAAAA-TCTCTTAAATCC
1 AAACCCCTAAAATCCAAAACTC-CTAAAATCC
* *
20939009 AAACCCCCTAAAATTCGAAACTCCTAAAATCC
1 AAA-CCCCTAAAATCCAAAACTCCTAAAATCC
* * * *
20939041 AAA-CCCTTAAAT-CAAAAC-CCCAAACTTC
1 AAACCCCTAAAATCCAAAACTCCTAAAATCC
**
20939069 AAA-CTTTAAAA-CCAAAAC-CCTAAAATCTCC
1 AAACCCCTAAAATCCAAAACTCCTAAAA--TCC
*
20939099 AAA-CTCTAAAAT-CAAAAC-CCTAAA
1 AAACCCCTAAAATCCAAAACTCCTAAA
20939123 CCTTTCATAC
Statistics
Matches: 93, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
28 26 0.28
29 5 0.05
30 32 0.34
31 3 0.03
32 25 0.27
33 2 0.02
ACGTcount: A:0.48, C:0.32, G:0.01, T:0.19
Consensus pattern (31 bp):
AAACCCCTAAAATCCAAAACTCCTAAAATCC
Found at i:20939092 original size:14 final size:14
Alignment explanation
Indices: 20939075--20939122 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
20939065 CTTCAAACTT
20939075 TAAAACCAAAACCC
1 TAAAACCAAAACCC
* *
20939089 TAAAATCTCCAAACTC
1 TAAAA-C-CAAAACCC
*
20939105 TAAAATCAAAACCC
1 TAAAACCAAAACCC
20939119 TAAA
1 TAAA
20939123 CCTTTCATAC
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
14 15 0.56
15 1 0.04
16 11 0.41
ACGTcount: A:0.54, C:0.29, G:0.00, T:0.17
Consensus pattern (14 bp):
TAAAACCAAAACCC
Found at i:20939139 original size:30 final size:28
Alignment explanation
Indices: 20939045--20939145 Score: 80
Period size: 30 Copynumber: 3.5 Consensus size: 28
20939035 AAATCCAAAC
*
20939045 CCTT-AAATCAAAACCCCAAAC-TTCAAA
1 CCTTAAAATCAAAACCCTAAACTTTC-AA
* * * *
20939072 CTTTAAAACCAAAACCCTAAAATCTCCAA
1 CCTTAAAATCAAAACCCTAAACT-TTCAA
*
20939101 ACTCTAAAATCAAAACCCTAAACCTTTCATA
1 CCT-TAAAATCAAAACCCTAAA-CTTTCA-A
20939132 CCTTAAAATTCAAA
1 CCTTAAAA-TCAAA
20939146 CATTAAACCC
Statistics
Matches: 56, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
27 3 0.05
28 14 0.25
29 3 0.05
30 27 0.48
31 9 0.16
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.23
Consensus pattern (28 bp):
CCTTAAAATCAAAACCCTAAACTTTCAA
Found at i:20955441 original size:5 final size:5
Alignment explanation
Indices: 20955431--20955486 Score: 51
Period size: 5 Copynumber: 11.0 Consensus size: 5
20955421 ATCTAAAATC
* * *
20955431 TAAAA TAAAA TGAAA TGAAAA TAAAA TAGAA -AAAA TAAAA TCAAAA CAAAA
1 TAAAA TAAAA TAAAA T-AAAA TAAAA TAAAA TAAAA TAAAA T-AAAA TAAAA
*
20955482 CAAAA
1 TAAAA
20955487 AATAGAATTA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
4 3 0.07
5 32 0.74
6 8 0.19
ACGTcount: A:0.75, C:0.05, G:0.05, T:0.14
Consensus pattern (5 bp):
TAAAA
Found at i:20955471 original size:25 final size:23
Alignment explanation
Indices: 20955437--20955517 Score: 65
Period size: 23 Copynumber: 3.4 Consensus size: 23
20955427 AATCTAAAAT
* *
20955437 AAAATGAAATGAAAATAAAATAGAA
1 AAAATAAAATCAAAA-AAAA-AGAA
* *
20955462 AAAATAAAATCAAAACAAAACAA
1 AAAATAAAATCAAAAAAAAAGAA
* *
20955485 AAAATAGAATTAAAAAAAAA-AA
1 AAAATAAAATCAAAAAAAAAGAA
*
20955507 GAAAAGAAAAT
1 -AAAATAAAAT
20955518 TCAGCGATCG
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
22 2 0.04
23 28 0.61
24 3 0.07
25 13 0.28
ACGTcount: A:0.77, C:0.04, G:0.07, T:0.12
Consensus pattern (23 bp):
AAAATAAAATCAAAAAAAAAGAA
Found at i:20956882 original size:43 final size:43
Alignment explanation
Indices: 20956805--20957031 Score: 267
Period size: 43 Copynumber: 5.3 Consensus size: 43
20956795 TAGAGAAAAA
* * *
20956805 TAAAATTAAGAAATGGGCTCCTCTATATAAAGGCTAAATAACTT
1 TAAAA-TAAGAAATGGGCTCCTCTAAACAGAGGCTAAATAACTT
** *
20956849 TAAAATAAGAAATGGGCTTTTCTAAACGGAGGCTAAATAACTT
1 TAAAATAAGAAATGGGCTCCTCTAAACAGAGGCTAAATAACTT
* * * * *
20956892 TAAAATAAGAAATGAGCTCATCTAAACAAAGGCTAAACACCTT
1 TAAAATAAGAAATGGGCTCCTCTAAACAGAGGCTAAATAACTT
* * * *
20956935 TAAAATAAGAAATAGGCTCCTCTAAATAGTGG-TAAACAACTT
1 TAAAATAAGAAATGGGCTCCTCTAAACAGAGGCTAAATAACTT
* * *
20956977 CAAAATAAGAAATGGGCTCCTCTATACAGACGCTAAATAACTT
1 TAAAATAAGAAATGGGCTCCTCTAAACAGAGGCTAAATAACTT
20957020 TAAAATTAAGAA
1 TAAAA-TAAGAA
20957032 TAAAGGCTAA
Statistics
Matches: 153, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
42 35 0.23
43 107 0.70
44 11 0.07
ACGTcount: A:0.45, C:0.15, G:0.14, T:0.26
Consensus pattern (43 bp):
TAAAATAAGAAATGGGCTCCTCTAAACAGAGGCTAAATAACTT
Done.