Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22157061
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 74000 characters in sequence are not A, C, G, or T
File 109 of 113
Found at i:21355630 original size:23 final size:22
Alignment explanation
Indices: 21355600--21355642 Score: 77
Period size: 23 Copynumber: 1.9 Consensus size: 22
21355590 TTGAATCTTT
21355600 TTTTTTTATTTTCTCATTTTTTC
1 TTTTTTTATTTT-TCATTTTTTC
21355623 TTTTTTTATTTTTCATTTTT
1 TTTTTTTATTTTTCATTTTT
21355643 CATCATCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.81
Consensus pattern (22 bp):
TTTTTTTATTTTTCATTTTTTC
Found at i:21356022 original size:14 final size:15
Alignment explanation
Indices: 21356003--21356031 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
21355993 ATGTATGGCA
21356003 TTTATTTTT-TTTCT
1 TTTATTTTTCTTTCT
21356017 TTTATTTTTCTTTCT
1 TTTATTTTTCTTTCT
21356032 CTTTTCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.07, C:0.10, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTATTTTTCTTTCT
Found at i:21356467 original size:463 final size:462
Alignment explanation
Indices: 21355905--21356832 Score: 1707
Period size: 463 Copynumber: 2.0 Consensus size: 462
21355895 CCAAAGGATC
21355905 ATTTGATGCAACTTGACATTTTACCCCCACATCATTTCATTACTTTTCTTTTCTCACACAAAAGA
1 ATTTGATGCAACTTGACATTTTACCCCCACATCATTTCATTACTTTTCTTTTCTCACACAAAAGA
21355970 TTCTCGTTATTTTACCCAAAATCATGTATGGCATTTATTTTTTTTCTTTTATTTTTCTTTCTCTT
66 TTCTCGTTATTTTACCCAAAATCATGTATGGCATTTATTTTTTTTCTTTTATTTTTCTTTCTCTT
*
21356035 T-TCATATTTGAGACCTTTTGTGATATTTTTTTCAAAAATTACCCCCCAGTGTAGAGGGTGATCC
131 TCT-ATATTTAAGACCTTTTGTGATATTTTTTTCAAAAATTA-CCCCCAGTGTAGAGGGTGATCC
21356099 TTGGTTAGGGTTCTTTAG-AAAAAAAATCATAATAGGCTCAAAAGGGTAGCAATGAATGATTTTT
194 TTGGTTAGGGTTCTTTAGAAAAAAAAATCATAATAGGCTCAAAAGGGTAGCAATGAATGATTTTT
* * *
21356163 CGAATGGTATAAGAAAGATGGCCATTTTCATTTCAATTGTGAATACTTTTCTTGAACATCATATA
259 CGAATCGTAAAAGAAAGATGGCCATTTTCATTTCAATTGTGAATACTTTTCTTAAACATCATATA
*
21356228 TTGAACAAAGCTCACGAACCTGTATAAAAGATTGCACATCTTCAAGATATATCTATTTCACCTCT
324 TTGAACAAAGCTCACGAACCTGTATAAAAGATTGCACATCTTCAAGACATATCTATTTCACCTCT
21356293 AGGTAACAACTTACTTTTTTGCTCAAATCATCTCCTCATATTAATATAGATGAGTTCTCAAAATT
389 -GGTAACAACTTACTTTTTTGCTCAAATCATCTCCTCATATTAATATAGATGAGTTCTCAAAATT
*
21356358 AAATCCCAGA
453 AAATACCAGA
*
21356368 ATTTGATGCAACTTGGCATTTTACCCCCACATCATTTCATTACTTTTCTTTTCTCACACAAAAGA
1 ATTTGATGCAACTTGACATTTTACCCCCACATCATTTCATTACTTTTCTTTTCTCACACAAAAGA
*
21356433 TTCTCGTTATTTTACCCCAAATCATGTATGGCATTTATTTTTTTTCTTTTATTTTTCTTTCTCTT
66 TTCTCGTTATTTTACCCAAAATCATGTATGGCATTTATTTTTTTTCTTTTATTTTTCTTTCTCTT
*
21356498 TCTATCTTTAAGACCTTTTGTGATATTTTTTTCAAAAATTACCCCCAGTGTAGAGGGTGATCCTT
131 TCTATATTTAAGACCTTTTGTGATATTTTTTTCAAAAATTACCCCCAGTGTAGAGGGTGATCCTT
21356563 GGTTAGGGTTCTTTAGAAAAAAAAATCATAATAGGCTCAAAAGGGTAGCAATGAATGATTTTTCG
196 GGTTAGGGTTCTTTAGAAAAAAAAATCATAATAGGCTCAAAAGGGTAGCAATGAATGATTTTTCG
*
21356628 AATCGTAAAAGAAAGATGGCCATTTTCATTTCAATTTTGAATACTTTTCTTAAACATCATATATT
261 AATCGTAAAAGAAAGATGGCCATTTTCATTTCAATTGTGAATACTTTTCTTAAACATCATATATT
21356693 GAACAAAGCTCACGAACCTGTATAAAAGATTGCACATCTTCAAGACATATCTATTTCACCTCTGG
326 GAACAAAGCTCACGAACCTGTATAAAAGATTGCACATCTTCAAGACATATCTATTTCACCTCTGG
*
21356758 TAACAACTTACTTTTTTGCTCAAATCATCTCCTCATATTAATATAGATGAGTTCTTAAAATTAAA
391 TAACAACTTACTTTTTTGCTCAAATCATCTCCTCATATTAATATAGATGAGTTCTCAAAATTAAA
*
21356823 TATCAGA
456 TACCAGA
21356830 ATT
1 ATT
21356833 ATTGTTATCA
Statistics
Matches: 451, Mismatches: 12, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
462 114 0.25
463 336 0.75
464 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.39
Consensus pattern (462 bp):
ATTTGATGCAACTTGACATTTTACCCCCACATCATTTCATTACTTTTCTTTTCTCACACAAAAGA
TTCTCGTTATTTTACCCAAAATCATGTATGGCATTTATTTTTTTTCTTTTATTTTTCTTTCTCTT
TCTATATTTAAGACCTTTTGTGATATTTTTTTCAAAAATTACCCCCAGTGTAGAGGGTGATCCTT
GGTTAGGGTTCTTTAGAAAAAAAAATCATAATAGGCTCAAAAGGGTAGCAATGAATGATTTTTCG
AATCGTAAAAGAAAGATGGCCATTTTCATTTCAATTGTGAATACTTTTCTTAAACATCATATATT
GAACAAAGCTCACGAACCTGTATAAAAGATTGCACATCTTCAAGACATATCTATTTCACCTCTGG
TAACAACTTACTTTTTTGCTCAAATCATCTCCTCATATTAATATAGATGAGTTCTCAAAATTAAA
TACCAGA
Found at i:21356485 original size:14 final size:15
Alignment explanation
Indices: 21356466--21356494 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
21356456 ATGTATGGCA
21356466 TTTATTTTT-TTTCT
1 TTTATTTTTCTTTCT
21356480 TTTATTTTTCTTTCT
1 TTTATTTTTCTTTCT
21356495 CTTTCTATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.07, C:0.10, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTATTTTTCTTTCT
Found at i:21360161 original size:58 final size:56
Alignment explanation
Indices: 21360072--21360598 Score: 501
Period size: 58 Copynumber: 9.1 Consensus size: 56
21360062 AAAAACCTTT
* **
21360072 TTTTTTGAAAATTTATTCTTAAAG-AAAATTGATACTTTCAACTTTTACCCAAAAATA
1 TTTTTTGAAAATTTAAT-TTCGAGAAAAATTGATACTTTCAACTTTT-CCCAAAAATA
* * * * * *
21360129 TATTTTAGAAACTTTAGTTTTGATAAATATTGATACTTTCAACTTTTCCCTAAAAATA
1 T-TTTTTGAAAATTTAATTTCGAGAAAAATTGATACTTTCAACTTTTCCC-AAAAATA
*
21360187 TTTTTTGAAAAATTTAATTTCGAGGAAAATTGATACTTTCAACTTTTCCTCAAAAA-A
1 TTTTTTG-AAAATTTAATTTCGAGAAAAATTGATACTTTCAACTTTTCC-CAAAAATA
* **
21360244 CTTTTTTTGAAAATTTATTTTTAACG-AAAATTGATACTTTCAACTTTTCCCTAAAAATA
1 --TTTTTTGAAAATTTAATTTCGA-GAAAAATTGATACTTTCAACTTTTCCC-AAAAATA
* * **
21360303 TTTTTTGAAAACTTTAATTTCGA-AGAAAATTGATACTTTTAACTTTTCTTC-AAAACC
1 TTTTTTGAAAA-TTTAATTTCGAGA-AAAATTGATACTTTCAACTTTTC-CCAAAAATA
* ** *
21360360 TTTTTAGAAAATTT-ATTTTTAAAGAAAATTGATACTTTCAACTTTTCCCCAAAAATA
1 TTTTTTGAAAATTTAATTTCGAGA-AAAATTGATACTTTCAACTTTT-CCCAAAAATA
* * * * *
21360417 TTTTTTGAAAACTTTAGTTTCGAAAAAAATTGATACTTTTAACTTTTCCTAAAAAAAAA
1 TTTTTTGAAAA-TTTAATTTCGAGAAAAATTGATACTTTCAACTTTTCC--CAAAAATA
* ** * *
21360476 CTTTTTTTGAAAATTTATTTTTAAGAAAAATTGATACTTGCAACTTTTCTCTAAAAATA
1 --TTTTTTGAAAATTTAATTTCGAGAAAAATTGATACTTTCAACTTTTC-CCAAAAATA
*
21360535 TTTTTTGGAAACTTTAATTTCGA-AGAAAATTGATACTTTCAACTTTTCCTCAAAAATA
1 TTTTTT-GAAAATTTAATTTCGAGA-AAAATTGATACTTTCAACTTTTCC-CAAAAATA
21360593 TTTTTT
1 TTTTTT
21360599 TTTGAATTTT
Statistics
Matches: 391, Mismatches: 52, Indels: 53
0.79 0.10 0.11
Matches are distributed among these distances:
55 5 0.01
56 27 0.07
57 64 0.16
58 224 0.57
59 29 0.07
60 30 0.08
61 12 0.03
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.44
Consensus pattern (56 bp):
TTTTTTGAAAATTTAATTTCGAGAAAAATTGATACTTTCAACTTTTCCCAAAAATA
Found at i:21360223 original size:116 final size:116
Alignment explanation
Indices: 21360030--21360598 Score: 713
Period size: 116 Copynumber: 4.9 Consensus size: 116
21360020 TTTTGTACAG
* * **
21360030 GAAAAATTGATACTTTCAACTTTTCCTTAAAAAAAAACCTTTTTTTTTGAAAA-TTT-ATTCTTA
1 GAAAAATTGATACTTTCAACTTTTCCCT----AAAAA---TATTTTTTGAAAACTTTAATT-TCG
* * * *
21360093 AAGAAAATTGATACTTTCAACTTTTACC-CAAAAATATATTTTAGAAACTTTAGTTTTGA
58 AAGAAAATTGATACTTTCAACTTTT-CCTCAAAAATATTTTTTAGAAAATTTATTTTTAA
* * * *
21360152 TAAATATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAAATTTAATTTCGAGGAAAAT
1 GAAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAACTTTAATTTCGAAGAAAAT
*
21360217 TGATACTTTCAACTTTTCCTCAAAAA-ACTTTTTTTGAAAATTTATTTTTAA
66 TGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTAGAAAATTTATTTTTAA
21360268 CG-AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAACTTTAATTTCGAAGAAAA
1 -GAAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAACTTTAATTTCGAAGAAAA
* * **
21360332 TTGATACTTTTAACTTTTCTTC-AAAA-CCTTTTTAGAAAATTTATTTTTAA
65 TTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAATTTATTTTTAA
* * *
21360382 -AGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAACTTTAGTTTCGAAAAAAA
1 GA-AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAACTTTAATTTCGAAGAAAA
* * * *
21360446 TTGATACTTTTAACTTTTCCTAAAAAAAAACTTTTTTTGAAAATTTATTTTTAA
65 TTGATACTTTCAACTTTTCCT-CAAAAATA-TTTTTTAGAAAATTTATTTTTAA
* * *
21360500 GAAAAATTGATACTTGCAACTTTTCTCTAAAAATATTTTTTGGAAACTTTAATTTCGAAGAAAAT
1 GAAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAACTTTAATTTCGAAGAAAAT
21360565 TGATACTTTCAACTTTTCCTCAAAAATATTTTTT
66 TGATACTTTCAACTTTTCCTCAAAAATATTTTTT
21360599 TTTGAATTTT
Statistics
Matches: 397, Mismatches: 38, Indels: 30
0.85 0.08 0.06
Matches are distributed among these distances:
114 100 0.25
115 19 0.05
116 141 0.36
117 9 0.02
118 102 0.26
119 1 0.00
122 25 0.06
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43
Consensus pattern (116 bp):
GAAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAACTTTAATTTCGAAGAAAAT
TGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAATTTATTTTTAA
Found at i:21360641 original size:6 final size:6
Alignment explanation
Indices: 21360617--21360688 Score: 67
Period size: 6 Copynumber: 11.5 Consensus size: 6
21360607 TTATTTAAAG
*
21360617 AAAAT- AAAATAA TAAAATA AAAATA AAAATA AAAATA AAAATA AAGAAAA
1 AAAATA AAAAT-A -AAAATA AAAATA AAAATA AAAATA AAAATA AA-AATA
*
21360667 GTAAAATA AAGAT- AAAATA AAA
1 --AAAATA AAAATA AAAATA AAA
21360689 GAATATTAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 13
0.77 0.05 0.18
Matches are distributed among these distances:
5 9 0.16
6 33 0.59
7 4 0.07
8 8 0.14
9 2 0.04
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:21360698 original size:27 final size:26
Alignment explanation
Indices: 21360617--21360694 Score: 74
Period size: 27 Copynumber: 3.0 Consensus size: 26
21360607 TTATTTAAAG
21360617 AAAATAAAATAATAAAAT-AAA-AATA-
1 AAAAT-AAA-AATAAAATAAAAGAATAT
*
21360642 AAAATAAAAATAAAA-ATAAAGAAAAGT
1 AAAATAAAAATAAAATA-AAAGAATA-T
*
21360669 AAAATAAAGATAAAATAAAAGAATAT
1 AAAATAAAAATAAAATAAAAGAATAT
21360695 TAAACAATTC
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
23 7 0.16
24 6 0.14
25 8 0.18
26 1 0.02
27 21 0.48
28 1 0.02
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (26 bp):
AAAATAAAAATAAAATAAAAGAATAT
Found at i:21361192 original size:6 final size:6
Alignment explanation
Indices: 21361181--21361233 Score: 63
Period size: 6 Copynumber: 8.7 Consensus size: 6
21361171 TTGATAGATA
* *
21361181 AAAAAT AAAAAT AAAAAT AAAAA- ATATATT AAATAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT A-AAAAT AAA-AAT AAAAAT AAAAAT
21361230 AAAA
1 AAAA
21361234 GCCCATTGGG
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 1 0.03
6 33 0.82
7 6 0.15
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (6 bp):
AAAAAT
Found at i:21361613 original size:102 final size:102
Alignment explanation
Indices: 21361393--21361697 Score: 425
Period size: 102 Copynumber: 3.0 Consensus size: 102
21361383 AGTTAACGTC
* * * *
21361393 ATTTTCTGACTCGCGATTTAATC-CTGATGTCTTTATTCTTCGATTCGTTGTTCAATCCCGATCT
1 ATTTTCTGACTCACGATTTAATCTC-GATCTCTTTATTCTTCGATTCGTGGTTCAATCTCGATCT
*
21361457 CTTT-ATTCAAAATCATAGTTTAATCTCGATTGTTGTT
65 CTTTAATTCAAAATCACAGTTTAATCTCGATTGTTGTT
* * * * * * * *
21361494 ATTTTCTAACTCCCGATTTAATCTCAATCTCTTTATTCTCCAAATCATGGTTCAATCTTGATCTC
1 ATTTTCTGACTCACGATTTAATCTCGATCTCTTTATTCTTCGATTCGTGGTTCAATCTCGATCTC
* *
21361559 TTTAATTCAAAATCGCAGTTTAATCTTGATTGTTGTT
66 TTTAATTCAAAATCACAGTTTAATCTCGATTGTTGTT
* *
21361596 ATTTTTTGACTCACGATTTAATCTCGATCTCTTTATTCTTCGATTCGTGGTTCAATCTCAATCTC
1 ATTTTCTGACTCACGATTTAATCTCGATCTCTTTATTCTTCGATTCGTGGTTCAATCTCGATCTC
*
21361661 TTTAATTTAAAATCACAGTTTAATCTCGATTGTTGTT
66 TTTAATTCAAAATCACAGTTTAATCTCGATTGTTGTT
21361698 GTTAACCCAT
Statistics
Matches: 175, Mismatches: 27, Indels: 3
0.85 0.13 0.01
Matches are distributed among these distances:
101 55 0.31
102 120 0.69
ACGTcount: A:0.23, C:0.20, G:0.11, T:0.46
Consensus pattern (102 bp):
ATTTTCTGACTCACGATTTAATCTCGATCTCTTTATTCTTCGATTCGTGGTTCAATCTCGATCTC
TTTAATTCAAAATCACAGTTTAATCTCGATTGTTGTT
Found at i:21361896 original size:174 final size:174
Alignment explanation
Indices: 21361623--21361950 Score: 469
Period size: 174 Copynumber: 1.9 Consensus size: 174
21361613 TTAATCTCGA
* * * *
21361623 TCTCTTTATTCTTCGATTCGTGGTTCAATCTCAATCTCTTTAATTTAAAATCACAGTTTAATCTC
1 TCTCTTTATTCTCCAATTCATGGTTCAATCTCAATCTCTTTAATTTAAAATCACAGTTCAATCTC
* * ** * *
21361688 GATTGTTGTTGTTAACCCATGACTCGTGGTTTATTTTCGGTCTTCTTATTTTTTGACTTGTGATT
66 GATTGTTGTTGTTAACCCATGACTAGTAGTTTATTCCCGATCTTCTTATTTTTTAACTTGTGATT
*
21361753 CAATCTAAGTTAACGTCATTTTTTGATTCACAGGTTAATCCCAG
131 CAATCTAAGTTAACGCCATTTTTTGATTCACAGGTTAATCCCAG
* ** **
21361797 TCTCTTTATTCTCCAATTTATGGTTCAATCTTGATCTCTTTAATTTAAAATCGTAGTTCAATCTC
1 TCTCTTTATTCTCCAATTCATGGTTCAATCTCAATCTCTTTAATTTAAAATCACAGTTCAATCTC
* *
21361862 GATTGTTGTTGTTAACCTC-TGACTAGTAGTTTATTCCCGATCTTTTTGTTTTTTAACTTGTGAT
66 GATTGTTGTTGTTAACC-CATGACTAGTAGTTTATTCCCGATCTTCTTATTTTTTAACTTGTGAT
*
21361926 TCAATCTAAGTTAACGCCTTTTTTT
130 TCAATCTAAGTTAACGCCATTTTTT
21361951 ATTTACGATT
Statistics
Matches: 134, Mismatches: 19, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
174 133 0.99
175 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.13, T:0.48
Consensus pattern (174 bp):
TCTCTTTATTCTCCAATTCATGGTTCAATCTCAATCTCTTTAATTTAAAATCACAGTTCAATCTC
GATTGTTGTTGTTAACCCATGACTAGTAGTTTATTCCCGATCTTCTTATTTTTTAACTTGTGATT
CAATCTAAGTTAACGCCATTTTTTGATTCACAGGTTAATCCCAG
Found at i:21362031 original size:34 final size:34
Alignment explanation
Indices: 21361955--21362038 Score: 105
Period size: 34 Copynumber: 2.5 Consensus size: 34
21361945 TTTTTTATTT
* *
21361955 ACGATTTAATCCTGATATCTTTATTCTTTAATTT
1 ACGATTTAATCCTGATATCTTTATTCTCTAATTC
** *
21361989 GTGATTTAATCCTGATATCTTTATTCTCTGATTC
1 ACGATTTAATCCTGATATCTTTATTCTCTAATTC
* *
21362023 ACGGTTTAATCTTGAT
1 ACGATTTAATCCTGAT
21362039 CCTTAATATT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 41 1.00
ACGTcount: A:0.24, C:0.15, G:0.11, T:0.50
Consensus pattern (34 bp):
ACGATTTAATCCTGATATCTTTATTCTCTAATTC
Found at i:21362426 original size:17 final size:19
Alignment explanation
Indices: 21362392--21362428 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
21362382 TTTTTTAATA
21362392 ATAATAATAATTTAAAAAAT
1 ATAATAATAA-TTAAAAAAT
21362412 ATAATAATAA-TAAAAAA
1 ATAATAATAATTAAAAAA
21362429 GACAGAAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
ATAATAATAATTAAAAAAT
Found at i:21362506 original size:11 final size:11
Alignment explanation
Indices: 21362492--21362525 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
21362482 ATTCAGCCCA
*
21362492 CCTATAGCCAC
1 CCTACAGCCAC
*
21362503 CCTACAGTCAC
1 CCTACAGCCAC
21362514 CCTACAGCCAC
1 CCTACAGCCAC
21362525 C
1 C
21362526 AAAATCCTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.26, C:0.50, G:0.09, T:0.15
Consensus pattern (11 bp):
CCTACAGCCAC
Found at i:21363828 original size:16 final size:16
Alignment explanation
Indices: 21363809--21363941 Score: 146
Period size: 15 Copynumber: 8.4 Consensus size: 16
21363799 CTAGGTTTCT
21363809 AAAACCCCTAAAATCC
1 AAAACCCCTAAAATCC
21363825 AAAACCCTCTAAAATCC
1 AAAACCC-CTAAAATCC
* *
21363842 AAAA-TCTTAAAATCC
1 AAAACCCCTAAAATCC
* *
21363857 AAAA-TCCTAAAATCT
1 AAAACCCCTAAAATCC
*
21363872 GAAACCCCTAAAAATCC
1 AAAACCCCT-AAAATCC
* *
21363889 AAAATCCCTTAAATCC
1 AAAACCCCTAAAATCC
*
21363905 -AAACCCTTAAAATCC
1 AAAACCCCTAAAATCC
*
21363920 GAAACCCCTAAAATCC
1 AAAACCCCTAAAATCC
21363936 AAAACC
1 AAAACC
21363942 TCTCAAAATT
Statistics
Matches: 98, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
15 36 0.37
16 36 0.37
17 26 0.27
ACGTcount: A:0.49, C:0.32, G:0.02, T:0.18
Consensus pattern (16 bp):
AAAACCCCTAAAATCC
Found at i:21363853 original size:32 final size:31
Alignment explanation
Indices: 21363817--21363942 Score: 137
Period size: 31 Copynumber: 4.0 Consensus size: 31
21363807 CTAAAACCCC
*
21363817 TAAAATCCAAAACCCTCTAAAATCCAAAATCT
1 TAAAATCCAAAACCC-CTAAAATCCAAAACCT
* * *
21363849 TAAAATCCAAAA-TCCTAAAATCTGAAACCCCT
1 TAAAATCCAAAACCCCTAAAATC-CAAA-ACCT
* * * *
21363881 AAAAATCCAAAATCCCTTAAATCCAAACCCT
1 TAAAATCCAAAACCCCTAAAATCCAAAACCT
*
21363912 TAAAATCCGAAACCCCTAAAATCCAAAACCT
1 TAAAATCCAAAACCCCTAAAATCCAAAACCT
21363943 CTCAAAATTC
Statistics
Matches: 78, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
30 8 0.10
31 34 0.44
32 28 0.36
33 8 0.10
ACGTcount: A:0.48, C:0.30, G:0.02, T:0.20
Consensus pattern (31 bp):
TAAAATCCAAAACCCCTAAAATCCAAAACCT
Found at i:21363868 original size:47 final size:45
Alignment explanation
Indices: 21363814--21363939 Score: 164
Period size: 47 Copynumber: 2.7 Consensus size: 45
21363804 TTTCTAAAAC
*
21363814 CCCTAAAATCCAAAACCCTCTAAAATCCAAAAT-CTTAAAATCCAAAA
1 CCCTAAAATCCGAAACCC-CTAAAATCCAAAATCCTT-AAATCC-AAA
* *
21363861 TCCTAAAATCTGAAACCCCTAAAAATCCAAAATCCCTTAAATCCAAA
1 CCCTAAAATCCGAAACCCCT-AAAATCCAAAAT-CCTTAAATCCAAA
21363908 CCCTTAAAATCCGAAACCCCTAAAATCCAAAA
1 CCC-TAAAATCCGAAACCCCTAAAATCCAAAA
21363940 CCTCTCAAAA
Statistics
Matches: 70, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
46 2 0.03
47 43 0.61
48 22 0.31
49 3 0.04
ACGTcount: A:0.48, C:0.31, G:0.02, T:0.19
Consensus pattern (45 bp):
CCCTAAAATCCGAAACCCCTAAAATCCAAAATCCTTAAATCCAAA
Found at i:21365315 original size:17 final size:18
Alignment explanation
Indices: 21365280--21365315 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
21365270 TCTTCAAAAA
*
21365280 AATAATTTTTTTATATTT
1 AATAATTTTTTAATATTT
21365298 AATAATTTTTTAAT-TTT
1 AATAATTTTTTAATATTT
21365315 A
1 A
21365316 CTTGTAAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
AATAATTTTTTAATATTT
Found at i:21365566 original size:21 final size:21
Alignment explanation
Indices: 21365528--21365567 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
21365518 TTTTTTTTTG
*
21365528 ATAAAAGTTAAATTGGAAATA
1 ATAAAAGTTAAATAGGAAATA
21365549 ATAAATAGTTAAA-AGGAAA
1 ATAAA-AGTTAAATAGGAAA
21365568 AAAGAAGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.60, C:0.00, G:0.15, T:0.25
Consensus pattern (21 bp):
ATAAAAGTTAAATAGGAAATA
Found at i:21366707 original size:2 final size:2
Alignment explanation
Indices: 21366702--21366726 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
21366692 TTGAATGTGA
21366702 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
21366727 AACTATTACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:21370709 original size:21 final size:21
Alignment explanation
Indices: 21370684--21370734 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
21370674 TCCGAAATTA
21370684 ATAAAATATTATTTTTTAAAT
1 ATAAAATATTATTTTTTAAAT
21370705 ATAAAATATTATTTTTTAAAT
1 ATAAAATATTATTTTTTAAAT
21370726 AT-AAATATT
1 ATAAAATATT
21370735 TAACAATATC
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 7 0.23
21 23 0.77
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
ATAAAATATTATTTTTTAAAT
Found at i:21372017 original size:43 final size:44
Alignment explanation
Indices: 21371969--21372051 Score: 107
Period size: 43 Copynumber: 1.9 Consensus size: 44
21371959 TAATCATGAC
* *
21371969 ATTTATGA-ATAATAATATATTTATATTCAAA-ATAGTTATGGCT
1 ATTTATCATATAATAAT-TATTTATATTCAAACATAATTATGGCT
* *
21372012 ATTTATCATATGATAATTATTTTTATTCAAACATAATTAT
1 ATTTATCATATAATAATTATTTATATTCAAACATAATTAT
21372052 TTAAAATATG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
43 20 0.59
44 14 0.41
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (44 bp):
ATTTATCATATAATAATTATTTATATTCAAACATAATTATGGCT
Found at i:21383029 original size:230 final size:230
Alignment explanation
Indices: 21382624--21383067 Score: 678
Period size: 230 Copynumber: 1.9 Consensus size: 230
21382614 TTTAAAGTCA
** * * * *
21382624 TTGACTAACGGATTATATTTGAAGATGGATCTATATTTTTCGAAGATAAAAGAAGGTACGAGTTT
1 TTGACTAACAAATTATATTTGAAGATAGATCTATATTTTTCAAAGATAAAAGAAGGTACGAGATC
* **
21382689 TTCTAATCACCTAAATTAGTTTAATAGGTTAGTTTCTTAATTACTGGCTATTTTTGTTGATAAGT
66 TTCTAATCACCTAAATTAGTTTAATAGATTAGTTTCTTAATTACTAACTATTTTTGTTGATAAGT
* *
21382754 TGTTTTAATTTTGTTATCATATTTGCCTAAGTCTTATAGACCTTTAGTTCAAACTTTGTTGGTGG
131 TGTTTTAATTTTGTTATCATATTTGCCTAAGTCTTATAAACCTTTAGTTCAAACTTTGTTAGTGG
*
21382819 GTAGATCTACTTTCAAATTGGTGGGTAGATCTGTT
196 GTAGATCTACTTTAAAATTGGTGGGTAGATCTGTT
*
21382854 TTGACTAACAAATTATATTTGAAGATAGATCTATATTCTTT-AAAGATAAAAGAAGGTATGA-AT
1 TTGACTAACAAATTATATTTGAAGATAGATCTATATT-TTTCAAAGATAAAAGAAGGTACGAGAT
* * *
21382917 CTTCATAATCACCTAAATTAGTTTAGTAGATTAGTTTTTTAATTACTAACTATTTTTGTT-AGTG
65 CTTC-TAATCACCTAAATTAGTTTAATAGATTAGTTTCTTAATTACTAACTATTTTTGTTGA-TA
* *
21382981 AGTTGTTTTAATTTTGTTGTCATCTTTGCCTAAGTCTTATAAACCTTTAGTTCAAACTTTGTTAG
128 AGTTGTTTTAATTTTGTTATCATATTTGCCTAAGTCTTATAAACCTTTAGTTCAAACTTTGTTAG
21383046 TGGGTAGATCTACTTTAAAATT
193 TGGGTAGATCTACTTTAAAATT
21383068 AGATGATATG
Statistics
Matches: 193, Mismatches: 18, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
229 5 0.03
230 185 0.96
231 3 0.02
ACGTcount: A:0.30, C:0.10, G:0.16, T:0.44
Consensus pattern (230 bp):
TTGACTAACAAATTATATTTGAAGATAGATCTATATTTTTCAAAGATAAAAGAAGGTACGAGATC
TTCTAATCACCTAAATTAGTTTAATAGATTAGTTTCTTAATTACTAACTATTTTTGTTGATAAGT
TGTTTTAATTTTGTTATCATATTTGCCTAAGTCTTATAAACCTTTAGTTCAAACTTTGTTAGTGG
GTAGATCTACTTTAAAATTGGTGGGTAGATCTGTT
Found at i:21384430 original size:6 final size:6
Alignment explanation
Indices: 21384389--21384476 Score: 51
Period size: 6 Copynumber: 14.5 Consensus size: 6
21384379 TAAATTTCTC
* * *
21384389 AAAAAT AAAACCAA AAAAAT AATAAA- AAAAACT AAAAAT -AAAAT -GAATT
1 AAAAAT AAAA--AT AAAAAT AA-AAAT AAAAA-T AAAAAT AAAAAT AAAAAT
*
21384438 AAAAAT -AAAAT -CAAAT CAAAAAAT AAAAAT AAAAAT AAA
1 AAAAAT AAAAAT AAAAAT --AAAAAT AAAAAT AAAAAT AAA
21384477 TGGAAAAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 18
0.71 0.09 0.20
Matches are distributed among these distances:
5 20 0.31
6 28 0.43
7 8 0.12
8 9 0.14
ACGTcount: A:0.77, C:0.06, G:0.01, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:21384477 original size:16 final size:16
Alignment explanation
Indices: 21384389--21384470 Score: 53
Period size: 16 Copynumber: 4.9 Consensus size: 16
21384379 TAAATTTCTC
** *
21384389 AAAAATAAAACCAAAA
1 AAAAATAAAAATAAAT
21384405 AAATAATAAAAA-AAACT
1 AAA-AATAAAAATAAA-T
*
21384422 AAAAAT-AAAATGAATT
1 AAAAATAAAAAT-AAAT
21384438 AAAAAT-AAAATCAAAT
1 AAAAATAAAAAT-AAAT
21384454 CAAAAAATAAAAATAAA
1 --AAAAATAAAAATAAA
21384471 AATAAATGGA
Statistics
Matches: 54, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
15 4 0.07
16 24 0.44
17 12 0.22
18 9 0.17
19 5 0.09
ACGTcount: A:0.77, C:0.06, G:0.01, T:0.16
Consensus pattern (16 bp):
AAAAATAAAAATAAAT
Found at i:21385374 original size:26 final size:25
Alignment explanation
Indices: 21385327--21385388 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 25
21385317 AATAAACTAT
*
21385327 ATATAATATAACTATAATATATTGCC-
1 ATATAATAT-ACTATAATATA-TACCA
**
21385353 ATATAATATACTATGTTAATATACCA
1 ATATAATATACTATAAT-ATATACCA
21385379 ATATAATATA
1 ATATAATATA
21385389 ATAAAATAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
25 9 0.29
26 22 0.71
ACGTcount: A:0.48, C:0.10, G:0.03, T:0.39
Consensus pattern (25 bp):
ATATAATATACTATAATATATACCA
Found at i:21388551 original size:21 final size:22
Alignment explanation
Indices: 21388513--21388557 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
21388503 TTTAACATAC
**
21388513 TTTAAATTTTTGTCTAAATCTT
1 TTTAAATTTTTGAATAAATCTT
21388535 TTTAAA-TTTTGAATAAATCTT
1 TTTAAATTTTTGAATAAATCTT
21388556 TT
1 TT
21388558 AATTTGATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.58
Consensus pattern (22 bp):
TTTAAATTTTTGAATAAATCTT
Found at i:21389671 original size:2 final size:2
Alignment explanation
Indices: 21389664--21389703 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
21389654 AAAATATTCC
21389664 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
21389704 GCATACGAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:21394427 original size:18 final size:18
Alignment explanation
Indices: 21394404--21394477 Score: 78
Period size: 18 Copynumber: 3.9 Consensus size: 18
21394394 AGTGAAAATA
*
21394404 TAAAATATAAACCTAAAC
1 TAAAATATAAAACTAAAC
* *
21394422 TAAAATATAAAATGTAAATG
1 TAAAATATAAAA-CTAAA-C
21394442 TAAAAT-TAAAACTAAAC
1 TAAAATATAAAACTAAAC
21394459 TAAGAATTATAAAACTAAA
1 TAA-AA-TATAAAACTAAA
21394478 TATGGAGAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
17 3 0.07
18 17 0.37
19 10 0.22
20 16 0.35
ACGTcount: A:0.62, C:0.08, G:0.04, T:0.26
Consensus pattern (18 bp):
TAAAATATAAAACTAAAC
Found at i:21397506 original size:22 final size:22
Alignment explanation
Indices: 21397463--21397506 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
21397453 TTTCAATATT
*
21397463 TATAATTTTTTAATACTCAAAA
1 TATAATTTTTTAATACTAAAAA
* *
21397485 TATAATTTTTTTATATTAAAAA
1 TATAATTTTTTAATACTAAAAA
21397507 AAATGTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (22 bp):
TATAATTTTTTAATACTAAAAA
Found at i:21399216 original size:24 final size:24
Alignment explanation
Indices: 21399189--21399236 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
21399179 TTTTGCTATA
21399189 CCAGAAGATAATTCCCTGTTCAGT
1 CCAGAAGATAATTCCCTGTTCAGT
21399213 CCAGAAGATAATTCCCTGTTCAGT
1 CCAGAAGATAATTCCCTGTTCAGT
21399237 TTAACTATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (24 bp):
CCAGAAGATAATTCCCTGTTCAGT
Found at i:21406350 original size:17 final size:18
Alignment explanation
Indices: 21406328--21406367 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
21406318 TATTTTATTT
21406328 TATAAAATTAA-AAAACA
1 TATAAAATTAATAAAACA
*
21406345 TATAAAATTAATAAAATA
1 TATAAAATTAATAAAACA
21406363 TATAA
1 TATAA
21406368 TTCATTAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (18 bp):
TATAAAATTAATAAAACA
Found at i:21406753 original size:17 final size:16
Alignment explanation
Indices: 21406731--21406764 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
21406721 TATAATTATT
21406731 TTTTAAAAAATAAGATA
1 TTTTAAAAAATAA-ATA
*
21406748 TTTTAAATAATAAATA
1 TTTTAAAAAATAAATA
21406764 T
1 T
21406765 AAATTTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (16 bp):
TTTTAAAAAATAAATA
Found at i:21407225 original size:12 final size:12
Alignment explanation
Indices: 21407190--21407260 Score: 88
Period size: 12 Copynumber: 5.9 Consensus size: 12
21407180 CCCAAAATCA
*
21407190 CCATCTCCCTCG
1 CCATCTCCATCG
* *
21407202 CCACCACCATCG
1 CCATCTCCATCG
*
21407214 CCATCTCTATCG
1 CCATCTCCATCG
*
21407226 CCATCTCCATCT
1 CCATCTCCATCG
*
21407238 CCATCTCCATCT
1 CCATCTCCATCG
21407250 CCATCTCCATC
1 CCATCTCCATC
21407261 TCCGCCAATG
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 51 1.00
ACGTcount: A:0.17, C:0.52, G:0.04, T:0.27
Consensus pattern (12 bp):
CCATCTCCATCG
Found at i:21407235 original size:6 final size:6
Alignment explanation
Indices: 21407208--21407263 Score: 85
Period size: 6 Copynumber: 9.3 Consensus size: 6
21407198 CTCGCCACCA
* * *
21407208 CCATCG CCATCT CTATCG CCATCT CCATCT CCATCT CCATCT CCATCT
1 CCATCT CCATCT CCATCT CCATCT CCATCT CCATCT CCATCT CCATCT
21407256 CCATCT CC
1 CCATCT CC
21407264 GCCAATGTCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.16, C:0.50, G:0.04, T:0.30
Consensus pattern (6 bp):
CCATCT
Found at i:21411176 original size:139 final size:137
Alignment explanation
Indices: 21411016--21411265 Score: 365
Period size: 139 Copynumber: 1.8 Consensus size: 137
21411006 TTATTGTGGC
* * *
21411016 TTTTTTTTTTAATTGTTTCTTACCCTATAAACAGCACATTTAAAACAAACAGGGGCAGTTGAAAC
1 TTTTTTTTTTAATCGTTTCTTACCCTAAAAACAGCACATTCAAAACAAACAGGGGCAGTTGAAAC
* * * * *
21411081 AAGATTCAGATCTCAGCGCTGACTTGTTGGGAATTTTTTTTTTATCTAGGACCCGTTAATAATTA
66 AACAATAACATCTCAGCGCTGACTTATTGGG-A-TTTTTTTTTATCTAGGACCCGTTAATAATTA
21411146 TCTTGGTTT
129 TCTTGGTTT
* * * *
21411155 TTTTTTTTTTAATCGTTTCTTACCCTAAAAACAGCACGTTCAAAACAATCATGGGCAGTTGAAAT
1 TTTTTTTTTTAATCGTTTCTTACCCTAAAAACAGCACATTCAAAACAAACAGGGGCAGTTGAAAC
*
21411220 AACAATAACATCTCAGCGTTGACTTATTGGGATTTTTTTTTATCTA
66 AACAATAACATCTCAGCGCTGACTTATTGGGATTTTTTTTTATCTA
21411266 AAATTTTTAA
Statistics
Matches: 98, Mismatches: 13, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
137 14 0.14
138 1 0.01
139 83 0.85
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.40
Consensus pattern (137 bp):
TTTTTTTTTTAATCGTTTCTTACCCTAAAAACAGCACATTCAAAACAAACAGGGGCAGTTGAAAC
AACAATAACATCTCAGCGCTGACTTATTGGGATTTTTTTTTATCTAGGACCCGTTAATAATTATC
TTGGTTT
Found at i:21411393 original size:28 final size:28
Alignment explanation
Indices: 21411343--21411397 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
21411333 TAAGAGATAA
* * **
21411343 TAAAATTTTTAAATTTATTTTTTATTTG
1 TAAAATTTTAAAATTAAAATTTTATTTG
21411371 TAAAATTTTAAAATTAAAATTTTATTT
1 TAAAATTTTAAAATTAAAATTTTATTT
21411398 AAAAACTATC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (28 bp):
TAAAATTTTAAAATTAAAATTTTATTTG
Found at i:21411617 original size:23 final size:23
Alignment explanation
Indices: 21411591--21411662 Score: 74
Period size: 23 Copynumber: 3.1 Consensus size: 23
21411581 AATAAGTTTT
*
21411591 AATTTTAATATATTTAATATTAA
1 AATTTTAATATTTTTAATATTAA
* * *
21411614 AATTTAAATTTTTTATAAAATTAA
1 AATTTTAATATTTT-TAATATTAA
*
21411638 AGTTTT-ATAATTTTTAATATTAA
1 AATTTTAAT-ATTTTTAATATTAA
21411661 AA
1 AA
21411663 AATAATTTTA
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
23 22 0.58
24 16 0.42
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (23 bp):
AATTTTAATATTTTTAATATTAA
Found at i:21412931 original size:22 final size:22
Alignment explanation
Indices: 21412906--21412949 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
21412896 TTAGCTTAAA
*
21412906 TTTAATTAAATTAAATTAAAAT
1 TTTAATTAAATAAAATTAAAAT
* * *
21412928 TTTATTTTAATAAAATTTAAAT
1 TTTAATTAAATAAAATTAAAAT
21412950 AATTTATGAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
TTTAATTAAATAAAATTAAAAT
Found at i:21412965 original size:46 final size:47
Alignment explanation
Indices: 21412865--21412965 Score: 104
Period size: 46 Copynumber: 2.2 Consensus size: 47
21412855 ACAAGAAGTT
* * **
21412865 TGAAT-TTAATTTAAAATTTATTTTTTAAAATTTAGCTTAAATTTAA
1 TGAATATTAAATTAAAATTTATTTTATAAAATTTAGAATAAATTTAA
*
21412911 TTAA-ATTAAATTAAAATTTTATTTTAATAAAATTTA-AAT-AATTT-A
1 TGAATATTAAATTAAAA-TTTATTTT-ATAAAATTTAGAATAAATTTAA
21412956 TGAATATTAA
1 TGAATATTAA
21412966 TTTATCATTT
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
45 4 0.09
46 23 0.51
47 9 0.20
48 9 0.20
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.50
Consensus pattern (47 bp):
TGAATATTAAATTAAAATTTATTTTATAAAATTTAGAATAAATTTAA
Found at i:21421460 original size:3 final size:3
Alignment explanation
Indices: 21421452--21421483 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
21421442 AGTAAAATAC
*
21421452 GTA GTA GTA GTA GTA GTA ATA GTA GTA GTA GT
1 GTA GTA GTA GTA GTA GTA GTA GTA GTA GTA GT
21421484 CACATCAGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
GTA
Found at i:21426655 original size:18 final size:18
Alignment explanation
Indices: 21426628--21426662 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
21426618 AACTAAATTT
*
21426628 TTTATAATAAAATTAAAA
1 TTTATAATAAAAATAAAA
*
21426646 TTTATTATAAAAATAAA
1 TTTATAATAAAAATAAA
21426663 TTCAAAATTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
TTTATAATAAAAATAAAA
Found at i:21434947 original size:27 final size:27
Alignment explanation
Indices: 21434917--21434971 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
21434907 AGCATCAGCC
21434917 ATGAAATAGTGCATTTTCCTGTAAACT
1 ATGAAATAGTGCATTTTCCTGTAAACT
* *
21434944 ATGAACTAGTGCATTTTCGTGTAAACT
1 ATGAAATAGTGCATTTTCCTGTAAACT
21434971 A
1 A
21434972 AGTTGAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (27 bp):
ATGAAATAGTGCATTTTCCTGTAAACT
Found at i:21447512 original size:16 final size:16
Alignment explanation
Indices: 21447482--21447627 Score: 127
Period size: 16 Copynumber: 8.8 Consensus size: 16
21447472 TTTTTAGGAC
*
21447482 TTTTA-GGAGTTTGGA
1 TTTTAGGGATTTTGGA
21447497 TTTTAGGGATTTTGGA
1 TTTTAGGGATTTTGGA
** *
21447513 TTTGGGGGGGTTTTTGGA
1 TTT--TAGGGATTTTGGA
21447531 TTTTAGGGATTTTGGA
1 TTTTAGGGATTTTGGA
*
21447547 TTTTATTAGGG-GTTTGGA
1 --TT-TTAGGGATTTTGGA
*
21447565 TTTAAGGGATTTTGGA
1 TTTTAGGGATTTTGGA
*
21447581 CTTTTAAGGG-GTTTGGA
1 -TTTT-AGGGATTTTGGA
21447598 TTTTAGGGATTTTGGA
1 TTTTAGGGATTTTGGA
*
21447614 TTTTTAGGGGTTTT
1 -TTTTAGGGATTTT
21447628 AAAAACTTAG
Statistics
Matches: 106, Mismatches: 14, Indels: 20
0.76 0.10 0.14
Matches are distributed among these distances:
15 14 0.13
16 40 0.38
17 21 0.20
18 25 0.24
19 6 0.06
ACGTcount: A:0.16, C:0.01, G:0.34, T:0.49
Consensus pattern (16 bp):
TTTTAGGGATTTTGGA
Found at i:21447596 original size:33 final size:32
Alignment explanation
Indices: 21447473--21447626 Score: 184
Period size: 34 Copynumber: 4.6 Consensus size: 32
21447463 TCACACGTGT
*
21447473 TTTTAGGACTTTT-AGGAGTTTGGATTTTAGGGA
1 TTTT-GGA-TTTTAAGGGGTTTGGATTTTAGGGA
***
21447506 TTTTGGATTTGGGGGGGTTTTTGGATTTTAGGGA
1 TTTTGGATTTTAAGGGG--TTTGGATTTTAGGGA
*
21447540 TTTTGGATTTTATTAGGGGTTTGGATTTAAGGGA
1 TTTTGGATTTTA--AGGGGTTTGGATTTTAGGGA
21447574 TTTTGGACTTTTAAGGGGTTTGGATTTTAGGGA
1 TTTTGGA-TTTTAAGGGGTTTGGATTTTAGGGA
*
21447607 TTTTGGATTTTTAGGGGTTT
1 TTTTGGATTTTAAGGGGTTT
21447627 TAAAAACTTA
Statistics
Matches: 106, Mismatches: 9, Indels: 13
0.83 0.07 0.10
Matches are distributed among these distances:
31 3 0.03
32 18 0.17
33 30 0.28
34 46 0.43
35 5 0.05
36 4 0.04
ACGTcount: A:0.17, C:0.01, G:0.34, T:0.48
Consensus pattern (32 bp):
TTTTGGATTTTAAGGGGTTTGGATTTTAGGGA
Found at i:21447965 original size:24 final size:26
Alignment explanation
Indices: 21447925--21447976 Score: 81
Period size: 24 Copynumber: 2.1 Consensus size: 26
21447915 ACATTTTTAA
*
21447925 TATATATATTTTTATTTTATTA-TAT
1 TATATATATTTTCATTTTATTACTAT
21447950 TATAT-TATTTTCATTTTATTACTAT
1 TATATATATTTTCATTTTATTACTAT
21447975 TA
1 TA
21447977 ATAACAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 15 0.60
25 10 0.40
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (26 bp):
TATATATATTTTCATTTTATTACTAT
Found at i:21448060 original size:25 final size:23
Alignment explanation
Indices: 21448025--21448080 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 23
21448015 TATCATACAT
*
21448025 AAAAAAAATATACT-TAAAATAAC
1 AAAAAAAATATA-TATAAAAAAAC
*
21448048 AAAAAATATATATATATAAAAAAAT
1 AAAAAA-A-ATATATATAAAAAAAC
21448073 AAAAAAAA
1 AAAAAAAA
21448081 ACCTGAACCG
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
23 7 0.25
24 3 0.11
25 18 0.64
ACGTcount: A:0.75, C:0.04, G:0.00, T:0.21
Consensus pattern (23 bp):
AAAAAAAATATATATAAAAAAAC
Found at i:21449088 original size:8 final size:8
Alignment explanation
Indices: 21449077--21449137 Score: 52
Period size: 9 Copynumber: 7.2 Consensus size: 8
21449067 TTTTTTCCTT
21449077 TTTTTTAA
1 TTTTTTAA
21449085 TTTTTTTTAA
1 --TTTTTTAA
21449095 -TTTTTAA
1 TTTTTTAA
21449102 TCTTTTTAA
1 T-TTTTTAA
*
21449111 TATTTTAAA
1 T-TTTTTAA
**
21449120 TTAATTAA
1 TTTTTTAA
21449128 TTTTTTAA
1 TTTTTTAA
21449136 TT
1 TT
21449138 ATAAAAATGT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
7 7 0.17
8 12 0.29
9 15 0.36
10 8 0.19
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.69
Consensus pattern (8 bp):
TTTTTTAA
Found at i:21449093 original size:10 final size:10
Alignment explanation
Indices: 21449075--21449099 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
21449065 CTTTTTTTCC
21449075 TTTTTTTTAA
1 TTTTTTTTAA
21449085 TTTTTTTTAA
1 TTTTTTTTAA
21449095 TTTTT
1 TTTTT
21449100 AATCTTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTTTTTTAA
Found at i:21449098 original size:17 final size:16
Alignment explanation
Indices: 21449078--21449118 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 16
21449068 TTTTTCCTTT
*
21449078 TTTTTAATTTTTTTTAA
1 TTTTTAA-TCTTTTTAA
21449095 TTTTTAATCTTTTTAA
1 TTTTTAATCTTTTTAA
21449111 TATTTTAA
1 T-TTTTAA
21449119 ATTAATTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTTAATCTTTTTAA
Found at i:21449355 original size:39 final size:39
Alignment explanation
Indices: 21449307--21449382 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
21449297 AATAATAAAG
* * *
21449307 AAAACGATCGGGACGACACCGCAAGTCAAGATGTAAACA
1 AAAACGATCGGGACAACACCACAAGTCAAGAAGTAAACA
* * *
21449346 AAAATGATCGGGATAACACCACGAGTCAAGAAGTAAA
1 AAAACGATCGGGACAACACCACAAGTCAAGAAGTAAA
21449383 GAATCGATTG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 31 1.00
ACGTcount: A:0.46, C:0.20, G:0.22, T:0.12
Consensus pattern (39 bp):
AAAACGATCGGGACAACACCACAAGTCAAGAAGTAAACA
Found at i:21449631 original size:87 final size:86
Alignment explanation
Indices: 21449484--21449759 Score: 374
Period size: 87 Copynumber: 3.2 Consensus size: 86
21449474 ATCATGTTCG
* * * *
21449484 GAGGTCTTACAAAATCGACTGGGACAACACCATAAGTCGAGAATAATGAATCGATTGGGATAATA
1 GAGGTCTTACAGAATCGACTGGGACAACATCACAAGTCGAGAATAATGAATCGATCGGGATAATA
* *
21449549 TCGCAAATCAAAATTATGCCC
66 CCGCAAATCAAAATTATACCC
* * *
21449570 AGAGGTCTTACAGAATCGACTGGGACAACATCGCAAGTTGAGAATAATGAATTGATCGGGATAAT
1 -GAGGTCTTACAGAATCGACTGGGACAACATCACAAGTCGAGAATAATGAATCGATCGGGATAAT
*
21449635 ACCGCGAATCAAAATTATACCC
65 ACCGCAAATCAAAATTATACCC
* *
21449657 GAAGGTCTTATAGAATCGACTGGGACAACATCACAAGTCGAGAATAATGAATCGATCGAGATAAT
1 G-AGGTCTTACAGAATCGACTGGGACAACATCACAAGTCGAGAATAATGAATCGATCGGGATAAT
* * * *
21449722 ACCACGAATCGAAATTATACCT
65 ACCGCAAATCAAAATTATACCC
21449744 GAAGGTCTTACA-AATC
1 G-AGGTCTTACAGAATC
21449760 AAGATCTTTA
Statistics
Matches: 169, Mismatches: 19, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
86 5 0.03
87 164 0.97
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.22
Consensus pattern (86 bp):
GAGGTCTTACAGAATCGACTGGGACAACATCACAAGTCGAGAATAATGAATCGATCGGGATAATA
CCGCAAATCAAAATTATACCC
Found at i:21450448 original size:59 final size:59
Alignment explanation
Indices: 21450363--21450582 Score: 365
Period size: 59 Copynumber: 3.8 Consensus size: 59
21450353 TTTTTTTTAG
*
21450363 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAAATTTATTTTTGA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAAATTTATTTCTGA
21450422 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAAATTTATTTCTGA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAAATTTATTTCTGA
* * *
21450481 GGAAAATTGATACTTTCAACTTTTCCCCAAAAGTA---TTTTTTGAAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTG-AAATTTATTTCTGA
*
21450538 GGAAAATTGATACTTTCAACTTTTCCGTAAAAATATTTTTTTTTG
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTG
21450583 GAACTTTTGA
Statistics
Matches: 150, Mismatches: 7, Indels: 7
0.91 0.04 0.04
Matches are distributed among these distances:
56 7 0.05
57 45 0.30
59 91 0.61
60 7 0.05
ACGTcount: A:0.33, C:0.12, G:0.09, T:0.46
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAAATTTATTTCTGA
Found at i:21450555 original size:116 final size:116
Alignment explanation
Indices: 21450363--21450582 Score: 361
Period size: 116 Copynumber: 1.9 Consensus size: 116
21450353 TTTTTTTTAG
* * *
21450363 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAAATTTATTTTTGAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTTGAAATTTATTTCTAAGGAAAA
21450428 TTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAAATTTATTTCTGA
64 TTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAAATTTATTTCTGA
*
21450481 GGAAAATTGATACTTTCAACTTTTCCCCAAAAGTA-TTTTTTGAAAATTTATTTCTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTG-AAATTTATTTCTAAGGAAAAT
*
21450545 TGATACTTTCAACTTTTCCGTAAAAATATTTTTTTTTG
65 TGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTG
21450583 GAACTTTTGA
Statistics
Matches: 96, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
115 7 0.07
116 56 0.58
118 33 0.34
ACGTcount: A:0.33, C:0.12, G:0.09, T:0.46
Consensus pattern (116 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAATTTATTTCTAAGGAAAATT
GATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAAATTTATTTCTGA
Found at i:21450631 original size:17 final size:17
Alignment explanation
Indices: 21450604--21450643 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
21450594 TTTTTTTATT
*
21450604 TAAAGAAAAATAGAAAAA
1 TAAA-AAAAATAAAAAAA
21450622 TAAAAAAAATAAAAAAA
1 TAAAAAAAATAAAAAAA
*
21450639 GAAAA
1 TAAAA
21450644 GTAAAACAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.82, C:0.00, G:0.07, T:0.10
Consensus pattern (17 bp):
TAAAAAAAATAAAAAAA
Found at i:21450641 original size:23 final size:25
Alignment explanation
Indices: 21450609--21450661 Score: 74
Period size: 23 Copynumber: 2.2 Consensus size: 25
21450599 TTATTTAAAG
*
21450609 AAAAATAGAAAAATAAAA-AAAA-T
1 AAAAAAAGAAAAATAAAACAAAACT
*
21450632 AAAAAAAGAAAAGTAAAACAAAACT
1 AAAAAAAGAAAAATAAAACAAAACT
21450657 AAAAA
1 AAAAA
21450662 TAAAATAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 16 0.62
24 4 0.15
25 6 0.23
ACGTcount: A:0.81, C:0.04, G:0.06, T:0.09
Consensus pattern (25 bp):
AAAAAAAGAAAAATAAAACAAAACT
Found at i:21451125 original size:19 final size:20
Alignment explanation
Indices: 21451081--21451127 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
21451071 GAACACCGGT
* *
21451081 GCCGGATTCTGGAAAAATTC
1 GCCGGAATCTGGAAAAATTA
*
21451101 GCCGGAATCTGG-AAATTTA
1 GCCGGAATCTGGAAAAATTA
21451120 GCCGGAAT
1 GCCGGAAT
21451128 TTCGCCGGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (20 bp):
GCCGGAATCTGGAAAAATTA
Found at i:21451183 original size:20 final size:20
Alignment explanation
Indices: 21451139--21451186 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
21451129 TCGCCGGAAG
*
21451139 TTCGTCGGTTTCTGGGATTA
1 TTCGCCGGTTTCTGGGATTA
* *
21451159 GTCGCCGGTTTCTGGGATTC
1 TTCGCCGGTTTCTGGGATTA
21451179 TTCGCCGG
1 TTCGCCGG
21451187 AAACTGGGCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.06, C:0.23, G:0.33, T:0.38
Consensus pattern (20 bp):
TTCGCCGGTTTCTGGGATTA
Found at i:21451674 original size:28 final size:25
Alignment explanation
Indices: 21451646--21451720 Score: 82
Period size: 25 Copynumber: 3.0 Consensus size: 25
21451636 AAATTAAAAT
* *
21451646 AATATCAGATAATTAAAAAAAATAG
1 AATAACAGATAATTAAAAAAAATAA
21451671 AATAACAGATAATTAAAAAAATAATAAA
1 AATAACAGATAATT-AAAAAA-AAT-AA
*
21451699 AATAA-A-ATAAATAAAAAAAATA
1 AATAACAGATAATTAAAAAAAATA
21451721 TATTAAAAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
23 1 0.02
24 3 0.07
25 19 0.43
26 11 0.25
27 4 0.09
28 6 0.14
ACGTcount: A:0.72, C:0.03, G:0.04, T:0.21
Consensus pattern (25 bp):
AATAACAGATAATTAAAAAAAATAA
Found at i:21451689 original size:26 final size:25
Alignment explanation
Indices: 21451630--21451698 Score: 79
Period size: 25 Copynumber: 2.7 Consensus size: 25
21451620 GAAAATCAAA
*
21451630 AATTAAAAATTAAAAT-AATATCAGAT
1 AATTAAAAA--AAAATAAATAACAGAT
21451656 AATT-AAAAAAAATAGAATAACAGAT
1 AATTAAAAAAAAATA-AATAACAGAT
21451681 AATTAAAAAAATAATAAA
1 AATTAAAAAAA-AATAAA
21451699 AATAAAATAA
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
23 5 0.13
25 17 0.45
26 12 0.32
27 4 0.11
ACGTcount: A:0.68, C:0.03, G:0.04, T:0.25
Consensus pattern (25 bp):
AATTAAAAAAAAATAAATAACAGAT
Found at i:21451701 original size:9 final size:9
Alignment explanation
Indices: 21451687--21451833 Score: 58
Period size: 9 Copynumber: 16.2 Consensus size: 9
21451677 AGATAATTAA
21451687 AAAAATAAT
1 AAAAATAAT
21451696 AAAAATAA-
1 AAAAATAAT
*
21451704 AATAAATAAA
1 AA-AAATAAT
21451714 AAAAATATATT
1 AAAAATA-A-T
21451725 AAAAA-AA-
1 AAAAATAAT
21451732 AAAAATAAT
1 AAAAATAAT
*
21451741 -AATATATAT
1 AAAAATA-AT
**
21451750 AACTATAA-
1 AAAAATAAT
21451758 ATAAAATACAT
1 A-AAAATA-AT
* *
21451769 ATAAAT-CT
1 AAAAATAAT
**
21451777 -AATCTAAT
1 AAAAATAAT
21451785 AAAAATAA-
1 AAAAATAAT
*
21451793 ATAAATAAAT
1 AAAAAT-AAT
21451803 AAAATATACAT
1 AAAA-ATA-AT
*
21451814 AATAATAAT
1 AAAAATAAT
*
21451823 AATAATAAT
1 AAAAATAAT
21451832 AA
1 AA
21451834 TATACAAAAA
Statistics
Matches: 105, Mismatches: 16, Indels: 34
0.68 0.10 0.22
Matches are distributed among these distances:
7 7 0.07
8 17 0.16
9 47 0.45
10 21 0.20
11 13 0.12
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (9 bp):
AAAAATAAT
Found at i:21451705 original size:15 final size:15
Alignment explanation
Indices: 21451687--21451835 Score: 65
Period size: 15 Copynumber: 9.7 Consensus size: 15
21451677 AGATAATTAA
21451687 AAAAATAATAAAAAT
1 AAAAATAATAAAAAT
21451702 -AAAATAAATAAAAA-
1 AAAAAT-AATAAAAAT
* *
21451716 AAATATATTAAAAA-
1 AAAAATAATAAAAAT
*
21451730 AAAAA-AATAATAAT
1 AAAAATAATAAAAAT
* * *
21451744 ATATATAACTATAAAT
1 AAAAATAA-TAAAAAT
*
21451760 -AAAATACATATAAAT
1 AAAAATA-ATAAAAAT
* **
21451775 CTAATCTAATAAAAAT
1 -AAAAATAATAAAAAT
21451791 AAATAAATAAATAAAATAT
1 -AA-AAAT-AATAAAA-AT
* *
21451810 ACATAATAATAATAAT
1 A-AAAATAATAAAAAT
*
21451826 AATAATAATA
1 AAAAATAATA
21451836 TACAAAAAAA
Statistics
Matches: 102, Mismatches: 20, Indels: 24
0.70 0.14 0.16
Matches are distributed among these distances:
13 6 0.06
14 19 0.19
15 34 0.33
16 17 0.17
17 12 0.12
18 11 0.11
19 3 0.03
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (15 bp):
AAAAATAATAAAAAT
Found at i:21451748 original size:26 final size:29
Alignment explanation
Indices: 21451685--21451810 Score: 91
Period size: 28 Copynumber: 4.4 Consensus size: 29
21451675 ACAGATAATT
21451685 AAAAAAATA-A-TAAAAATAAAATAAATA
1 AAAAAAATATATTAAAAATAAAATAAATA
21451712 AAAAAAATATATTAAAAA-AAAA-AAATA
1 AAAAAAATATATTAAAAATAAAATAAATA
* * * *
21451739 ATAATATATATAACTATAAATAAAATACATATA
1 A-AAAAAATAT-ATTAAAAATAAAATA-A-ATA
*** * *
21451772 AATCTAATCTAATAAAAAT-AAATAAATA
1 AAAAAAATATATTAAAAATAAAATAAATA
*
21451800 AATAAAATATA
1 AAAAAAATATA
21451811 CATAATAATA
Statistics
Matches: 77, Mismatches: 14, Indels: 15
0.73 0.13 0.14
Matches are distributed among these distances:
27 15 0.19
28 23 0.30
29 13 0.17
30 9 0.12
31 8 0.10
32 5 0.06
33 4 0.05
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.25
Consensus pattern (29 bp):
AAAAAAATATATTAAAAATAAAATAAATA
Found at i:21451820 original size:3 final size:3
Alignment explanation
Indices: 21451781--21451835 Score: 51
Period size: 3 Copynumber: 17.7 Consensus size: 3
21451771 AAATCTAATC
*
21451781 TAA TAA AAA TAAA TAAA TAAA TAA -AA T-A TACA TAA TAA TAA TAA TAA
1 TAA TAA TAA T-AA T-AA T-AA TAA TAA TAA TA-A TAA TAA TAA TAA TAA
21451828 TAA TAA TA
1 TAA TAA TA
21451836 TACAAAAAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
2 4 0.09
3 28 0.61
4 14 0.30
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:21452020 original size:1 final size:1
Alignment explanation
Indices: 21452014--21452100 Score: 129
Period size: 1 Copynumber: 87.0 Consensus size: 1
21452004 CAACTCAACA
* * * *
21452014 TTTTTTTTTTGTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTGTTTTTTTGTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
21452079 TGTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTT
21452101 GCNNNNNNNN
Statistics
Matches: 76, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 76 1.00
ACGTcount: A:0.00, C:0.00, G:0.06, T:0.94
Consensus pattern (1 bp):
T
Found at i:21452077 original size:44 final size:43
Alignment explanation
Indices: 21452014--21452099 Score: 154
Period size: 44 Copynumber: 2.0 Consensus size: 43
21452004 CAACTCAACA
21452014 TTTTTTTTTTGTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTG
1 TTTTTTTTTTGTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTG
*
21452057 TTTTTTTGTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTT
1 TTTTTTT-TTTGTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTT
21452100 TGCNNNNNNN
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
43 7 0.17
44 34 0.83
ACGTcount: A:0.00, C:0.00, G:0.06, T:0.94
Consensus pattern (43 bp):
TTTTTTTTTTGTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTG
Found at i:21458314 original size:16 final size:16
Alignment explanation
Indices: 21458215--21458328 Score: 79
Period size: 17 Copynumber: 6.8 Consensus size: 16
21458205 TCCTTAAGAC
*
21458215 TTTTA-GGAGTTTGGA
1 TTTTAGGGATTTTGGA
*
21458230 TTTTAGGGATTTTGAA
1 TTTTAGGGATTTTGGA
* *
21458246 TTTTGGGGGGTTTTGGA
1 TTTT-AGGGATTTTGGA
* *
21458263 CTTTAAGGG-TTTCGGA
1 -TTTTAGGGATTTTGGA
*
21458279 TTTTAGGGGGGAGGTTTGGA
1 TTTTA---GGGA-TTTTGGA
21458299 TTTTAGGGATTTTGGA
1 TTTTAGGGATTTTGGA
*
21458315 TTTTTAGGGGTTTT
1 -TTTTAGGGATTTT
21458329 AAAAACTTAG
Statistics
Matches: 77, Mismatches: 13, Indels: 16
0.73 0.12 0.15
Matches are distributed among these distances:
15 9 0.12
16 24 0.31
17 28 0.36
18 6 0.08
20 10 0.13
ACGTcount: A:0.16, C:0.02, G:0.36, T:0.46
Consensus pattern (16 bp):
TTTTAGGGATTTTGGA
Found at i:21459794 original size:21 final size:21
Alignment explanation
Indices: 21459770--21459810 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
21459760 TTTTTTTTTC
21459770 TTTTTTT-TCCTTTTTAAAAAA
1 TTTTTTTAT-CTTTTTAAAAAA
21459791 TTTTTTTAATCTTTTTAAAA
1 TTTTTTT-ATCTTTTTAAAA
21459811 TTTTAAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.39
22 10 0.56
23 1 0.06
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.63
Consensus pattern (21 bp):
TTTTTTTATCTTTTTAAAAAA
Found at i:21461013 original size:6 final size:6
Alignment explanation
Indices: 21461002--21461053 Score: 104
Period size: 6 Copynumber: 8.7 Consensus size: 6
21460992 GTCTAGATAA
21461002 TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG
1 TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG
21461050 TGAT
1 TGAT
21461054 AGTGTGAATT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.17, C:0.00, G:0.48, T:0.35
Consensus pattern (6 bp):
TGATGG
Found at i:21461431 original size:18 final size:18
Alignment explanation
Indices: 21461400--21461487 Score: 83
Period size: 18 Copynumber: 5.1 Consensus size: 18
21461390 TATGGTTATT
*
21461400 ATCCACCTCAAATGTATC
1 ATCCACCACAAATGTATC
*
21461418 ATCTACCACAAATGTATC
1 ATCCACCACAAATGTATC
**
21461436 CCCCACCACAAATGTATC
1 ATCCACCACAAATGTATC
* *
21461454 AT---CCTCAAATATATC
1 ATCCACCACAAATGTATC
* *
21461469 GTCCACCTCAAATGTATC
1 ATCCACCACAAATGTATC
21461487 A
1 A
21461488 AAAATAAAGG
Statistics
Matches: 55, Mismatches: 12, Indels: 6
0.75 0.16 0.08
Matches are distributed among these distances:
15 12 0.22
18 43 0.78
ACGTcount: A:0.35, C:0.33, G:0.06, T:0.26
Consensus pattern (18 bp):
ATCCACCACAAATGTATC
Found at i:21461463 original size:33 final size:35
Alignment explanation
Indices: 21461402--21461487 Score: 104
Period size: 33 Copynumber: 2.5 Consensus size: 35
21461392 TGGTTATTAT
*
21461402 CCACCTCAAATGTATCATCTACCACAAATGTATCCC
1 CCACCTCAAATGTATCA-CTACCACAAATATATCCC
* * **
21461438 CCACCACAAATGTATCA-T-CCTCAAATATATCGT
1 CCACCTCAAATGTATCACTACCACAAATATATCCC
21461471 CCACCTCAAATGTATCA
1 CCACCTCAAATGTATCA
21461488 AAAATAAAGG
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
33 27 0.61
34 1 0.02
36 16 0.36
ACGTcount: A:0.35, C:0.34, G:0.06, T:0.26
Consensus pattern (35 bp):
CCACCTCAAATGTATCACTACCACAAATATATCCC
Found at i:21462109 original size:18 final size:18
Alignment explanation
Indices: 21462072--21462110 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
21462062 GAGCTTCAAA
*
21462072 ATTTTTTAAAAAAATTAT
1 ATTTTTTAAAAAAATAAT
21462090 ATTTTTTAAAAATAA-AAT
1 ATTTTTTAAAAA-AATAAT
21462108 ATT
1 ATT
21462111 AATAAAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 17 0.89
19 2 0.11
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTTTTTAAAAAAATAAT
Found at i:21470598 original size:15 final size:14
Alignment explanation
Indices: 21470573--21470602 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
21470563 TAATAACATA
21470573 TTTTATTATATTAT
1 TTTTATTATATTAT
21470587 TTTTATTTATATTAT
1 TTTTA-TTATATTAT
21470602 T
1 T
21470603 AGTTGATCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTTATTATATTAT
Found at i:21470666 original size:24 final size:24
Alignment explanation
Indices: 21470632--21470765 Score: 92
Period size: 24 Copynumber: 5.5 Consensus size: 24
21470622 AGAACACGTT
21470632 TTTATGTTATTTAATTTGTAAATTA
1 TTTAT-TTATTTAATTTGTAAATTA
*
21470657 TTTATTTATTT-ATTATATAAATTA
1 TTTATTTATTTAATT-TGTAAATTA
** * *
21470681 TTTATTTATTTAACATGTAAGTTG
1 TTTATTTATTTAATTTGTAAATTA
* * ** *
21470705 CTTATTTATTT-ATTTAGCATGTTT
1 TTTATTTATTTAATTT-GTAAATTA
* ** * *
21470729 TTTGTTTATTTAACATATAATTTA
1 TTTATTTATTTAATTTGTAAATTA
21470753 TTTATTTATTTAA
1 TTTATTTATTTAA
21470766 CATTATACGT
Statistics
Matches: 83, Mismatches: 22, Indels: 9
0.73 0.19 0.08
Matches are distributed among these distances:
23 5 0.06
24 70 0.84
25 8 0.10
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.60
Consensus pattern (24 bp):
TTTATTTATTTAATTTGTAAATTA
Found at i:21470756 original size:20 final size:20
Alignment explanation
Indices: 21470708--21470760 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
21470698 TAAGTTGCTT
* * *
21470708 ATTTATTTATTTAGCATGTT
1 ATTTATTTATTTAACATATA
* *
21470728 TTTTGTTTATTTAACATATA
1 ATTTATTTATTTAACATATA
21470748 ATTTATTTATTTA
1 ATTTATTTATTTA
21470761 TTTAACATTA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.28, C:0.04, G:0.06, T:0.62
Consensus pattern (20 bp):
ATTTATTTATTTAACATATA
Found at i:21470766 original size:24 final size:24
Alignment explanation
Indices: 21470654--21470768 Score: 103
Period size: 24 Copynumber: 4.8 Consensus size: 24
21470644 AATTTGTAAA
** *
21470654 TTATTTATTTATTTATTATATAAA
1 TTATTTATTTATTTAACATATAAT
*
21470678 TTATTTATTTATTTAACATGTAAGTT
1 TTATTTATTTATTTAACATATAA--T
* *
21470704 GCTTATTTATTTATTTAGC--AT-GT
1 --TTATTTATTTATTTAACATATAAT
*
21470727 TT-TTTGTTTATTTAACATATAAT
1 TTATTTATTTATTTAACATATAAT
21470750 TTATTTATTTATTTAACAT
1 TTATTTATTTATTTAACAT
21470769 TATACGTTGT
Statistics
Matches: 72, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
20 12 0.17
21 2 0.03
22 2 0.03
23 4 0.06
24 35 0.49
26 1 0.01
28 16 0.22
ACGTcount: A:0.30, C:0.04, G:0.05, T:0.60
Consensus pattern (24 bp):
TTATTTATTTATTTAACATATAAT
Found at i:21470816 original size:24 final size:24
Alignment explanation
Indices: 21470789--21470842 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
21470779 TTATTACTTT
*
21470789 TTTAATTAACATGGAAATTGTTCA
1 TTTAATTAACATGGAAATTATTCA
* * *
21470813 TTTATTTAACATGTAAATTATTTA
1 TTTAATTAACATGGAAATTATTCA
21470837 TTTAAT
1 TTTAAT
21470843 ATATAAATTG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.06, G:0.07, T:0.50
Consensus pattern (24 bp):
TTTAATTAACATGGAAATTATTCA
Found at i:21470837 original size:20 final size:20
Alignment explanation
Indices: 21470812--21470851 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
21470802 GAAATTGTTC
*
21470812 ATTTATTTAACATGTAAATT
1 ATTTATTTAACATATAAATT
*
21470832 ATTTATTTAATATATAAATT
1 ATTTATTTAACATATAAATT
21470852 GTTATATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (20 bp):
ATTTATTTAACATATAAATT
Found at i:21470998 original size:13 final size:13
Alignment explanation
Indices: 21470982--21471006 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21470972 ATAAAGTAGT
21470982 AATATAATTAAAA
1 AATATAATTAAAA
21470995 AATATAATTAAA
1 AATATAATTAAA
21471007 TTAAAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
AATATAATTAAAA
Found at i:21471534 original size:109 final size:108
Alignment explanation
Indices: 21471343--21471552 Score: 296
Period size: 109 Copynumber: 1.9 Consensus size: 108
21471333 CATAAAAAAA
* * * *
21471343 TTTGATTTCAACTTTATCGGTCTTCGTGTGACCCCTTTGTGTGGGTACTCCAATTATGACCATAA
1 TTTGACTTCAACTTTATCGGTCTTCGTGTCACCCCTTTGCGTGGGTACTCCAATTATGACAATAA
* *
21471408 TAATTAAAACCTGCTCTTTCAATGACCATTAAAAAAAAAATTTT
66 AAATTAAAACCTACTCTTTCAATGACCA-TAAAAAAAAAATTTT
* * *
21471452 TTTGACTTGAACTTTA-CAGGTCTTTGTGTCACCCCTTTGCGTGGGTACTCCAATTATGATAATA
1 TTTGACTTCAACTTTATC-GGTCTTCGTGTCACCCCTTTGCGTGGGTACTCCAATTATGACAATA
* *
21471516 AAAATTACAAGCTACTCTTTCAATGACCATAAAAAAA
65 AAAATTAAAACCTACTCTTTCAATGACCATAAAAAAA
21471553 GTAAAAGTTG
Statistics
Matches: 89, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
108 9 0.10
109 80 0.90
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (108 bp):
TTTGACTTCAACTTTATCGGTCTTCGTGTCACCCCTTTGCGTGGGTACTCCAATTATGACAATAA
AAATTAAAACCTACTCTTTCAATGACCATAAAAAAAAAATTTT
Found at i:21472701 original size:12 final size:11
Alignment explanation
Indices: 21472667--21472708 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
21472657 CTCTTTTCTC
*
21472667 TTTTGTTATTT
1 TTTTATTATTT
*
21472678 TTTTATGA-TT
1 TTTTATTATTT
21472688 TTTTATATATTT
1 TTTTAT-TATTT
21472700 TTTTATTAT
1 TTTTATTAT
21472709 ACATTTTGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
10 8 0.31
11 10 0.38
12 8 0.31
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.76
Consensus pattern (11 bp):
TTTTATTATTT
Found at i:21474112 original size:2 final size:2
Alignment explanation
Indices: 21474107--21474147 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
21474097 TCTCTCTCTC
* *
21474107 TA TA TA TA TA TA TA TA TA TA TA TA AA TA TA TT TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
21474148 GAAATTCGTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:21475123 original size:15 final size:12
Alignment explanation
Indices: 21475086--21475116 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
21475076 TTTTCAAAAA
21475086 TTTTATTAATTG
1 TTTTATTAATTG
21475098 TTTTATTAATTG
1 TTTTATTAATTG
21475110 TTTTATT
1 TTTTATT
21475117 TTTAATTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (12 bp):
TTTTATTAATTG
Found at i:21475847 original size:19 final size:19
Alignment explanation
Indices: 21475806--21475849 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
21475796 GTTCAATACC
* * *
21475806 GGTTCGGTTCGGTCTGGGC
1 GGTTCGGTTCGATCTGCGA
*
21475825 GGTTCGGTTTGATCTGCGA
1 GGTTCGGTTCGATCTGCGA
21475844 GGTTCG
1 GGTTCG
21475850 ATTTCGATCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.05, C:0.18, G:0.43, T:0.34
Consensus pattern (19 bp):
GGTTCGGTTCGATCTGCGA
Found at i:21476354 original size:28 final size:28
Alignment explanation
Indices: 21476295--21476356 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
21476285 TGAGAAAAAA
** * *
21476295 TTTTTTTTTTGTATTCTGACCCTTCTTT
1 TTTTTTTTTTGTAAACTGACCCCTATTT
21476323 TTTTTTTTTTG-AAACTGACCCCTATTT
1 TTTTTTTTTTGTAAACTGACCCCTATTT
*
21476350 GTTTTTT
1 TTTTTTT
21476357 CGTGCAAGAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 18 0.62
28 11 0.38
ACGTcount: A:0.11, C:0.16, G:0.08, T:0.65
Consensus pattern (28 bp):
TTTTTTTTTTGTAAACTGACCCCTATTT
Found at i:21477163 original size:49 final size:49
Alignment explanation
Indices: 21477016--21477514 Score: 487
Period size: 49 Copynumber: 10.4 Consensus size: 49
21477006 TCATCTTAGT
* * * *
21477016 AGAGGCTCAACAACTTAAAAAT-TT-TTTTGG-AAAGGCTACTCTCAGC
1 AGAGGCTCAACAACTTTAAAATCTTCTCTTGGAAAAAGCTCCTCTCAGC
* * * * *
21477062 AGAGGCTCTACAACTTTAAAAATC-T-T-TTAGAAATA-CTTCTCTCAAC
1 AGAGGCTCAACAACTTT-AAAATCTTCTCTTGGAAAAAGCTCCTCTCAGC
* * * *
21477108 AGAGGCTTAACAGCTTTAAAATCTTCTCTT-GAAAAGGACTCCTTTCAGC
1 AGAGGCTCAACAACTTTAAAATCTTCTCTTGGAAAAAG-CTCCTCTCAGC
* *
21477157 AGAGGCTTAACAACTTTAAAA--TTCTCTT-GAAAAAGCTCCTCTCAGT
1 AGAGGCTCAACAACTTTAAAATCTTCTCTTGGAAAAAGCTCCTCTCAGC
* * ** *
21477203 AGAGACTCAACAACTTTAAAA--ATCTCTTGGAAATGGCTCATCTCAGC
1 AGAGGCTCAACAACTTTAAAATCTTCTCTTGGAAAAAGCTCCTCTCAGC
* * * *
21477250 AGAGGCTCAACAAATTTAAAATTCTTATCTTGG-AAAAGTTCTTCTCAGC
1 AGAGGCTCAACAACTTTAAAA-TCTTCTCTTGGAAAAAGCTCCTCTCAGC
* * * **
21477299 AGAGGCTTAACAACTTTAAAATTCTTATCTT-GAAAAAGCTCTTCTCAAT
1 AGAGGCTCAACAACTTTAAAA-TCTTCTCTTGGAAAAAGCTCCTCTCAGC
*
21477348 AGAGGCTCAATAACTTTAAAAATC-TCT-TTGG-AAAAGCTCCTCTCAGC
1 AGAGGCTCAACAACTTT-AAAATCTTCTCTTGGAAAAAGCTCCTCTCAGC
* * *
21477395 AGAGGCTCAACAACTTTAAAATCTTATTTTGGAAAAAGCTCCTCTCAGT
1 AGAGGCTCAACAACTTTAAAATCTTCTCTTGGAAAAAGCTCCTCTCAGC
* *
21477444 AGAGGCTCAACAACTTTAAAAATC-TCATTTTGGAAAAAGCTCATCTCAGC
1 AGAGGCTCAACAACTTT-AAAATCTTC-TCTTGGAAAAAGCTCCTCTCAGC
21477494 AGAGGCTCAACAACTTTAAAA
1 AGAGGCTCAACAACTTTAAAA
21477515 AATTTTCATA
Statistics
Matches: 382, Mismatches: 51, Indels: 37
0.81 0.11 0.08
Matches are distributed among these distances:
45 6 0.02
46 82 0.21
47 93 0.24
48 10 0.03
49 136 0.36
50 55 0.14
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (49 bp):
AGAGGCTCAACAACTTTAAAATCTTCTCTTGGAAAAAGCTCCTCTCAGC
Found at i:21477318 original size:96 final size:94
Alignment explanation
Indices: 21477016--21477515 Score: 494
Period size: 96 Copynumber: 5.2 Consensus size: 94
21477006 TCATCTTAGT
* * *
21477016 AGAGGCTCAACAAC-TTAAAAATTTTTTTGG-AAAGGCT-ACTCTCAGCAGAGGCTCTACAACTT
1 AGAGGCTCAACAACTTTAAAAATCTTCTTGGAAAAGGCTCA-TCTCAGCAGAGGCTCAACAACTT
* * *
21477078 TAAAAATCTTTTAGAAATA-CTTCTCTCAAC
65 TAAAAATCTTTTGGAAA-AGCTCCTCTCAGC
* * * * * *
21477108 AGAGGCTTAACAGCTTT-AAAATCTTCTCTTGAAAAGGACTCCTTTCAGCAGAGGCTTAACAACT
1 AGAGGCTCAACAACTTTAAAAATCTTCT-TGGAAAAGG-CTCATCTCAGCAGAGGCTCAACAACT
* * * *
21477172 TTAAAATTCTCTTGAAAAAGCTCCTCTCAGT
64 TTAAAAATCTTTTGGAAAAGCTCCTCTCAGC
* * *
21477203 AGAGACTCAACAACTTTAAAAATC-TCTTGGAAATGGCTCATCTCAGCAGAGGCTCAACAAATTT
1 AGAGGCTCAACAACTTTAAAAATCTTCTTGGAAAAGGCTCATCTCAGCAGAGGCTCAACAACTTT
* * *
21477267 AAAATTCTTATCTTGGAAAAGTTCTTCTCAGC
66 AAAAATC-T-T-TTGGAAAAGCTCCTCTCAGC
* * * * ** *
21477299 AGAGGCTTAACAACTTTAAAATTCTTATCTT-GAAAAAGCTCTTCTCAATAGAGGCTCAATAACT
1 AGAGGCTCAACAACTTTAAAAATC-T-TCTTGGAAAAGGCTCATCTCAGCAGAGGCTCAACAACT
21477363 TTAAAAATCTCTTTGGAAAAGCTCCTCTCAGC
64 TTAAAAATCT-TTTGGAAAAGCTCCTCTCAGC
* * * *
21477395 AGAGGCTCAACAACTTT-AAAATCTTATTTTGGAAAAAGCTCCTCTCAGTAGAGGCTCAACAACT
1 AGAGGCTCAACAACTTTAAAAATC-T-TCTTGGAAAAGGCTCATCTCAGCAGAGGCTCAACAACT
*
21477459 TTAAAAATCTCATTTTGGAAAAAGCTCATCTCAGC
64 TTAAAAA--TC-TTTTGG-AAAAGCTCCTCTCAGC
21477494 AGAGGCTCAACAACTTTAAAAA
1 AGAGGCTCAACAACTTTAAAAA
21477516 ATTTTCATAT
Statistics
Matches: 338, Mismatches: 51, Indels: 30
0.81 0.12 0.07
Matches are distributed among these distances:
92 20 0.06
93 35 0.10
94 14 0.04
95 71 0.21
96 114 0.34
97 2 0.01
98 41 0.12
99 37 0.11
100 4 0.01
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (94 bp):
AGAGGCTCAACAACTTTAAAAATCTTCTTGGAAAAGGCTCATCTCAGCAGAGGCTCAACAACTTT
AAAAATCTTTTGGAAAAGCTCCTCTCAGC
Found at i:21477392 original size:145 final size:143
Alignment explanation
Indices: 21477016--21477515 Score: 572
Period size: 145 Copynumber: 3.5 Consensus size: 143
21477006 TCATCTTAGT
* * * *
21477016 AGAGGCTCAACAACTTAAAAATT-TTT-TTGGAAAGGCTACTCTCAGCAGAGGCTCTACAACTTT
1 AGAGGCTCAACAACTTTAAAATTCTTTCTTGAAAAAGCT-CTCTCAGCAGAGGCTCAACAACTTT
* * * * * *
21477079 AAAAATCT-TTTAGAAATA-CTTCTCTCAACAGAGGCTTAACAGCTTTAAAATCTTCTCTT-GAA
65 AAAAATCTCTTTGGAAATAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTTATCTTGGAA
*
21477141 AAGGACTCCTT-TCAGC
130 AA-G--TTCTTCTCAGC
* * *
21477157 AGAGGCTTAACAACTTTAAAATTC--TCTTGAAAAAGCTCCTCTCAGTAGAGACTCAACAACTTT
1 AGAGGCTCAACAACTTTAAAATTCTTTCTTGAAAAAGCT-CTCTCAGCAGAGGCTCAACAACTTT
* * *
21477220 AAAAATCTC-TTGGAAATGGCTCATCTCAGCAGAGGCTCAACAAATTTAAAATTCTTATCTTGGA
65 AAAAATCTCTTTGGAAATAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA-TCTTATCTTGGA
21477284 AAAGTTCTTCTCAGC
129 AAAGTTCTTCTCAGC
* ** *
21477299 AGAGGCTTAACAACTTTAAAATTCTTATCTTGAAAAAGCTCTTCTCAATAGAGGCTCAATAACTT
1 AGAGGCTCAACAACTTTAAAATTCTT-TCTTGAAAAAGCTC-TCTCAGCAGAGGCTCAACAACTT
*
21477364 TAAAAATCTCTTTGGAAA-AGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTTATTTTGGA
64 TAAAAATCTCTTTGGAAATAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTTATCTTGG-
* * *
21477428 AAAAGCTCCTCTCAGT
128 AAAAGTTCTTCTCAGC
*
21477444 AGAGGCTCAACAACTTTAAAAATCTCATTT-TGGAAAAAGCTCATCTCAGCAGAGGCTCAACAAC
1 AGAGGCTCAACAACTTT-AAAAT-TC-TTTCTTGAAAAAGCTC-TCTCAGCAGAGGCTCAACAAC
21477508 TTTAAAAA
62 TTTAAAAA
21477516 ATTTTCATAT
Statistics
Matches: 309, Mismatches: 34, Indels: 27
0.84 0.09 0.07
Matches are distributed among these distances:
140 1 0.00
141 71 0.23
142 55 0.18
143 9 0.03
144 16 0.05
145 103 0.33
146 49 0.16
147 3 0.01
148 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (143 bp):
AGAGGCTCAACAACTTTAAAATTCTTTCTTGAAAAAGCTCTCTCAGCAGAGGCTCAACAACTTTA
AAAATCTCTTTGGAAATAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTTATCTTGGAAA
AGTTCTTCTCAGC
Found at i:21480408 original size:207 final size:205
Alignment explanation
Indices: 21480008--21480393 Score: 437
Period size: 207 Copynumber: 1.9 Consensus size: 205
21479998 GTTTTATTAA
* * * *
21480008 TTATTTTTATTTTGAAGAAAAAAAAATTTATTTGTATTGAAGTTTTTCTATAAATATTCTAATAC
1 TTATTTTTACTTTGAAGAAAAAAAAATTTATTTGTATTGAAATTTTTCTATAAATACTCCAATAC
* * * ** * *
21480073 ATTGGTAATATTTAAAAAAAATCTTCTCACCTAGGGATTTTTTAAAGCATATTTACTCGGAATAC
66 ACTAGTAATATTTAAAAAAAATCTTCTCACCTAGAGATTTCGTAAAGCATATCTACTCGAAATAC
** *
21480138 TTTTAGAATCCCATCATTGGATAAAATTTATTTTCTTCTCATTTTTATTACTTATTTTTATTATA
131 TTTTAGAATCCCATCATCAGATAAAATTTATTTTC-TCTCATTTTTATTACTTATTATTATTATA
21480203 TTAATCAATTT
195 TTAATCAATTT
*
21480214 TTATTTATTACTTT-AA-AAAAAAAAATTT-TTACTGTATTGAAAATTTTTTTATAAATACTCCA
1 TTATTT-TTACTTTGAAGAAAAAAAAATTTATT--TGTATTG-AAATTTTTCTATAAATACTCCA
* * *
21480276 ATACACTAGTAGTATTTTAAAAAAATCTTCTCACCTAGAGATTTCGT-AGGCATCA-CTACTCGA
62 ATACACTAGTAATATTTAAAAAAAATCTTCTCACCTAGAGATTTCGTAAAGCAT-ATCTACTCGA
* * *
21480339 AATTC-TTT-GAATCTCATCGTCAGATAAAAATTTCATTTTC-CTACATTTTTTATTA
126 AATACTTTTAGAATCCCATCATCAGAT-AAAATTT-ATTTTCTCT-CA-TTTTTATTA
21480394 GTTTGGTATT
Statistics
Matches: 151, Mismatches: 20, Indels: 18
0.80 0.11 0.10
Matches are distributed among these distances:
204 17 0.11
205 24 0.16
206 45 0.30
207 65 0.43
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (205 bp):
TTATTTTTACTTTGAAGAAAAAAAAATTTATTTGTATTGAAATTTTTCTATAAATACTCCAATAC
ACTAGTAATATTTAAAAAAAATCTTCTCACCTAGAGATTTCGTAAAGCATATCTACTCGAAATAC
TTTTAGAATCCCATCATCAGATAAAATTTATTTTCTCTCATTTTTATTACTTATTATTATTATAT
TAATCAATTT
Found at i:21480638 original size:13 final size:13
Alignment explanation
Indices: 21480620--21480654 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
21480610 TAATCAATGC
*
21480620 ACGGTTCGGTTCG
1 ACGGTTCGGTCCG
*
21480633 ACGGTTCGATCCG
1 ACGGTTCGGTCCG
21480646 ACGGTTCGG
1 ACGGTTCGG
21480655 CTAGGTCTGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.11, C:0.26, G:0.37, T:0.26
Consensus pattern (13 bp):
ACGGTTCGGTCCG
Found at i:21481641 original size:4 final size:4
Alignment explanation
Indices: 21481634--21481676 Score: 61
Period size: 4 Copynumber: 10.8 Consensus size: 4
21481624 GAAAGAGAAA
*
21481634 AAAT AAAT AAAT AAAT AAAT AAAT AATAA AAAT AAA- AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AA-AT AAAT AAAT AAAT AAA
21481677 AAAAATGGTG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
3 3 0.09
4 29 0.83
5 3 0.09
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:21481678 original size:8 final size:8
Alignment explanation
Indices: 21481633--21481680 Score: 53
Period size: 8 Copynumber: 5.9 Consensus size: 8
21481623 AGAAAGAGAA
21481633 AAAATAAAT
1 AAAA-AAAT
*
21481642 AAATAAAT
1 AAAAAAAT
*
21481650 AAATAAAT
1 AAAAAAAT
21481658 AATAAAAAT
1 AA-AAAAAT
21481667 -AAAAAAT
1 AAAAAAAT
21481674 AAAAAAA
1 AAAAAAA
21481681 ATGGTGTTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
7 6 0.17
8 21 0.60
9 8 0.23
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (8 bp):
AAAAAAAT
Found at i:21481680 original size:16 final size:16
Alignment explanation
Indices: 21481631--21481682 Score: 59
Period size: 16 Copynumber: 3.0 Consensus size: 16
21481621 AAAGAAAGAG
21481631 AAAAAATAAATAAATAAAT
1 AAAAAAT-AA-AAA-AAAT
*
21481650 AAATAAATAATAAAAAT
1 AAA-AAATAAAAAAAAT
21481667 AAAAAATAAAAAAAAT
1 AAAAAATAAAAAAAAT
21481683 GGTGTTTACA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
16 12 0.40
17 7 0.23
18 2 0.07
19 5 0.17
20 4 0.13
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (16 bp):
AAAAAATAAAAAAAAT
Found at i:21482399 original size:18 final size:19
Alignment explanation
Indices: 21482361--21482399 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
21482351 ACAACTAAAA
*
21482361 TTTTTGTTGTGTTTTGCCT
1 TTTTTGTTGTGTTTTGACT
*
21482380 TTTTTTTTGTGTTTT-ACT
1 TTTTTGTTGTGTTTTGACT
21482398 TT
1 TT
21482400 ATTGACAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.03, C:0.08, G:0.15, T:0.74
Consensus pattern (19 bp):
TTTTTGTTGTGTTTTGACT
Found at i:21484442 original size:20 final size:19
Alignment explanation
Indices: 21484396--21484443 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
21484386 AAAAAAATTG
* *
21484396 AACTTAAATATTTTATTAT
1 AACTTAAAAATTATATTAT
*
21484415 ATCTTTAAAAATTATATTAAT
1 AAC-TTAAAAATTATATT-AT
21484436 AACTTAAA
1 AACTTAAA
21484444 TTATATAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 2 0.09
20 17 0.74
21 4 0.17
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (19 bp):
AACTTAAAAATTATATTAT
Found at i:21485457 original size:28 final size:32
Alignment explanation
Indices: 21485398--21485472 Score: 86
Period size: 32 Copynumber: 2.4 Consensus size: 32
21485388 AAATATTAAT
* *
21485398 AAATATATATATATAATTTGTATTTTATATAA
1 AAATATATATATATAATTTGTATATCATATAA
21485430 AAATATATAT-TATAA-TT-TATATCA-ATAA
1 AAATATATATATATAATTTGTATATCATATAA
*
21485458 AAATATTAAATATAT
1 AAATA-TATATATAT
21485473 TTTTTAATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
28 9 0.24
29 9 0.24
30 5 0.13
31 5 0.13
32 10 0.26
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (32 bp):
AAATATATATATATAATTTGTATATCATATAA
Found at i:21485536 original size:21 final size:21
Alignment explanation
Indices: 21485510--21485554 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
21485500 AAATTTTAAA
21485510 TTATATTATTTTTTATATATT
1 TTATATTATTTTTTATATATT
* * *
21485531 TTATATTTTTTTTTGTCTATT
1 TTATATTATTTTTTATATATT
21485552 TTA
1 TTA
21485555 AGTTATCAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (21 bp):
TTATATTATTTTTTATATATT
Found at i:21487202 original size:2 final size:2
Alignment explanation
Indices: 21487190--21487222 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
21487180 ACTGATCTAT
*
21487190 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
21487223 TTTCCCATCC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:21488413 original size:27 final size:26
Alignment explanation
Indices: 21488359--21488413 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 26
21488349 TGTAGAACCG
** **
21488359 AATTGAATTAAGAACAATTGAATTAA
1 AATTGAATTAAGAACAAGAGAACAAA
21488385 AATTGAACTTAAGAACAAGAGAACAAA
1 AATTGAA-TTAAGAACAAGAGAACAAA
21488412 AA
1 AA
21488414 ACCTAGTTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 7 0.29
27 17 0.71
ACGTcount: A:0.58, C:0.07, G:0.13, T:0.22
Consensus pattern (26 bp):
AATTGAATTAAGAACAAGAGAACAAA
Found at i:21494613 original size:37 final size:38
Alignment explanation
Indices: 21494529--21494624 Score: 115
Period size: 37 Copynumber: 2.6 Consensus size: 38
21494519 AGAAAACTAG
* * *
21494529 TAAAATAAAAAAATTGAAAATAAAATAAAAATCAAAATA
1 TAAAATAAAAATA-TGAAAAGAAAATAAAAATCAAAAAA
* * *
21494568 TAAGATAAATATATGAAAAGAAAAT-GAAATCAAAAAA
1 TAAAATAAAAATATGAAAAGAAAATAAAAATCAAAAAA
21494605 TAAAATAAAAATA-GAAAAGA
1 TAAAATAAAAATATGAAAAGA
21494625 GAAACTTACG
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
36 7 0.14
37 21 0.43
38 11 0.22
39 10 0.20
ACGTcount: A:0.72, C:0.02, G:0.07, T:0.19
Consensus pattern (38 bp):
TAAAATAAAAATATGAAAAGAAAATAAAAATCAAAAAA
Found at i:21495436 original size:3 final size:3
Alignment explanation
Indices: 21495424--21495533 Score: 110
Period size: 3 Copynumber: 39.0 Consensus size: 3
21495414 GAAAAATAAC
*
21495424 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA GTA ATA ATA ATA ATA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
21495470 ATA CTA AT- ATA AT- ATA ATA ATA AT- GTA AT- ATA ACA TATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA
*
21495512 ATA ACA A-A ATA ATA AT- ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA
21495534 TAGTAATACA
Statistics
Matches: 89, Mismatches: 9, Indels: 18
0.77 0.08 0.16
Matches are distributed among these distances:
2 15 0.17
3 72 0.81
4 2 0.02
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:21495466 original size:27 final size:26
Alignment explanation
Indices: 21495428--21495541 Score: 123
Period size: 24 Copynumber: 4.5 Consensus size: 26
21495418 AATAACATAA
21495428 AATAATAATAATAATAATAATAATAGT
1 AATAATAATAATAATAATAATAATA-T
*
21495455 AATAATAATAATAAT-ATACTAATAT
1 AATAATAATAATAATAATAATAATAT
*
21495480 AAT-ATAATAATAATGTAAT-ATAACAT
1 AATAATAATAATAA--TAATAATAATAT
*
21495506 -ATAATAATAACAA-AATAATAATAT
1 AATAATAATAATAATAATAATAATAT
*
21495530 AAT-ATAGTAATA
1 AATAATAATAATA
21495542 CAAAAATAAT
Statistics
Matches: 74, Mismatches: 7, Indels: 15
0.77 0.07 0.16
Matches are distributed among these distances:
23 3 0.04
24 23 0.31
25 8 0.11
26 23 0.31
27 17 0.23
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (26 bp):
AATAATAATAATAATAATAATAATAT
Found at i:21496175 original size:8 final size:8
Alignment explanation
Indices: 21496154--21496244 Score: 80
Period size: 8 Copynumber: 11.6 Consensus size: 8
21496144 CTCATTATAG
21496154 GGTTTTAA
1 GGTTTTAA
21496162 -GTTTTAA
1 GGTTTTAA
21496169 GGTTTT-A
1 GGTTTTAA
**
21496176 GGATTTCGA
1 GG-TTTTAA
*
21496185 GATTTTAA
1 GGTTTTAA
*
21496193 GGTTTTAG
1 GGTTTTAA
21496201 GGTTTTAA
1 GGTTTTAA
* *
21496209 GCTTTCAA
1 GGTTTTAA
21496217 GGTTTT-A
1 GGTTTTAA
* *
21496224 GGGTTTAG
1 GGTTTTAA
21496232 GGTTTTAA
1 GGTTTTAA
21496240 GGTTT
1 GGTTT
21496245 CAAAATTTCA
Statistics
Matches: 64, Mismatches: 15, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
7 16 0.25
8 46 0.72
9 2 0.03
ACGTcount: A:0.21, C:0.03, G:0.27, T:0.48
Consensus pattern (8 bp):
GGTTTTAA
Found at i:21496190 original size:24 final size:24
Alignment explanation
Indices: 21496151--21496244 Score: 97
Period size: 24 Copynumber: 4.0 Consensus size: 24
21496141 GGTCTCATTA
21496151 TAGGGTTTTA-AG-TTTTAAGGTTT
1 TAGGG-TTTAGAGATTTTAAGGTTT
* *
21496174 TAGGATTTCGAGATTTTAAGGTTT
1 TAGGGTTTAGAGATTTTAAGGTTT
* *
21496198 TAGGGTTTTA-AGCTTTCAAGGTTT
1 TAGGG-TTTAGAGATTTTAAGGTTT
*
21496222 TAGGGTTTAG-GGTTTTAAGGTTT
1 TAGGGTTTAGAGATTTTAAGGTTT
21496245 CAAAATTTCA
Statistics
Matches: 59, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
22 3 0.05
23 21 0.36
24 32 0.54
25 3 0.05
ACGTcount: A:0.21, C:0.03, G:0.28, T:0.48
Consensus pattern (24 bp):
TAGGGTTTAGAGATTTTAAGGTTT
Found at i:21496236 original size:39 final size:39
Alignment explanation
Indices: 21496188--21496317 Score: 127
Period size: 39 Copynumber: 3.3 Consensus size: 39
21496178 ATTTCGAGAT
* *
21496188 TTTAAGGTTTTAGGGTTTTAAGCTTTCAAGGTTTTAGGG
1 TTTAGGGTTTTAGGGTTTTAAGATTTCAAGGTTTTAGGG
* * *
21496227 TTTAGGGTTTTAAGGTTTCAAAATTTCAAGGTTTT-GGG
1 TTTAGGGTTTTAGGGTTTTAAGATTTCAAGGTTTTAGGG
* * * * * * *
21496265 ATTTAGGGCTTTGGGGTTTTGAGGTTTCAATGTTTCGAGGT
1 -TTTAGGGTTTTAGGGTTTTAAGATTTCAAGGTTT-TAGGG
21496306 TTTAGGGTTTTA
1 TTTAGGGTTTTA
21496318 AAGTTTAGGG
Statistics
Matches: 71, Mismatches: 17, Indels: 5
0.76 0.18 0.05
Matches are distributed among these distances:
38 3 0.04
39 56 0.79
40 10 0.14
41 2 0.03
ACGTcount: A:0.19, C:0.05, G:0.29, T:0.46
Consensus pattern (39 bp):
TTTAGGGTTTTAGGGTTTTAAGATTTCAAGGTTTTAGGG
Found at i:21496260 original size:31 final size:31
Alignment explanation
Indices: 21496156--21496269 Score: 113
Period size: 31 Copynumber: 3.6 Consensus size: 31
21496146 CATTATAGGG
* * *
21496156 TTTTAAGTTTTAAGGTTTT-AGGATTTCGAGA
1 TTTTAAGGTTTAGGGTTTTAAGG-TTTCAAGA
* *
21496187 TTTTAAGGTTTTAGGGTTTTAAGCTTTCAAGG
1 TTTTAAGG-TTTAGGGTTTTAAGGTTTCAAGA
* *
21496219 TTTTAGGGTTTAGGGTTTTAAGGTTTCAAAA
1 TTTTAAGGTTTAGGGTTTTAAGGTTTCAAGA
* * *
21496250 TTTCAAGGTTTTGGGATTTA
1 TTTTAAGGTTTAGGGTTTTA
21496270 GGGCTTTGGG
Statistics
Matches: 68, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
31 43 0.63
32 23 0.34
33 2 0.03
ACGTcount: A:0.24, C:0.04, G:0.25, T:0.47
Consensus pattern (31 bp):
TTTTAAGGTTTAGGGTTTTAAGGTTTCAAGA
Found at i:21496282 original size:47 final size:47
Alignment explanation
Indices: 21496220--21496330 Score: 134
Period size: 47 Copynumber: 2.4 Consensus size: 47
21496210 CTTTCAAGGT
21496220 TTTAGGGTTTAGGGTTTTAAGGTTTCAAAATTTCAAGGTTTT-GGGA
1 TTTAGGGTTTAGGGTTTTAAGGTTTCAAAATTTCAAGGTTTTAGGGA
* * ** * *
21496266 TTTAGGGCTTTGGGGTTTTGAGGTTTCAATGTTTCGAGGTTTTAGGGT
1 TTTAGGG-TTTAGGGTTTTAAGGTTTCAAAATTTCAAGGTTTTAGGGA
**
21496314 TTTAAAGTTTAGGGTTT
1 TTTAGGGTTTAGGGTTT
21496331 CGAAAAGAAT
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
46 7 0.13
47 39 0.72
48 8 0.15
ACGTcount: A:0.19, C:0.05, G:0.31, T:0.46
Consensus pattern (47 bp):
TTTAGGGTTTAGGGTTTTAAGGTTTCAAAATTTCAAGGTTTTAGGGA
Found at i:21498300 original size:14 final size:15
Alignment explanation
Indices: 21498266--21498301 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
21498256 GCATAATTTC
*
21498266 AATTCCACAAGCCAT
1 AATTTCACAAGCCAT
21498281 AATTTCACAAGCCA-
1 AATTTCACAAGCCAT
21498295 AATTTCA
1 AATTTCA
21498302 AAGTGATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.42, C:0.28, G:0.06, T:0.25
Consensus pattern (15 bp):
AATTTCACAAGCCAT
Found at i:21510299 original size:60 final size:59
Alignment explanation
Indices: 21510227--21510461 Score: 262
Period size: 60 Copynumber: 3.9 Consensus size: 59
21510217 ATTTGAAGAT
* * * *
21510227 TTTTA-TTTTAAGGAAAATTAATACTTTCAACTTTTCCTTAAAATGTTTTTCTTAATAA
1 TTTTATTTTTAAGAAAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTCTTAATAA
* * * * *
21510285 TCTTTATTTTTAAGGAAAATTGGTACTTTCAACTTTTCCTTCAAATATTTTTTTTTTGA-AA
1 T-TTTATTTTTAAGAAAAATTGATACTTTCAACTTTTCC-TCAAA-ATATTTTTCTTAATAA
* * *
21510346 TTTTAATTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAATACTTTTCTTAATAA
1 TTTTATTTTTAAGAAAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTCTTAATAA
* *
21510405 TTTTTATTTTTAAGAAAAATTTG-TACTTCCAACTTTTTCTCAAAATATATTTT-TTAA
1 -TTTTATTTTTAAGAAAAA-TTGATACTTTCAACTTTTCCTCAAAATAT-TTTTCTTAA
21510462 ATTTATTTTA
Statistics
Matches: 150, Mismatches: 19, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
58 10 0.07
59 11 0.07
60 105 0.70
61 14 0.09
62 10 0.07
ACGTcount: A:0.33, C:0.12, G:0.05, T:0.50
Consensus pattern (59 bp):
TTTTATTTTTAAGAAAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTCTTAATAA
Found at i:21510397 original size:120 final size:121
Alignment explanation
Indices: 21510218--21510459 Score: 344
Period size: 120 Copynumber: 2.0 Consensus size: 121
21510208 CTTTAAAGCA
* * * * **
21510218 TTTGAAGATTTTTATTTTAAGGAAAATTAATACTTTCAACTTTTCCTTAAAATGTTTTTCTTAAT
1 TTTGAAGATTTTAATTTCAAGAAAAATTAATACTTTCAACTTTTCCTCAAAATACTTTTCTTAAT
* * *
21510283 AATCTTTATTTTTAAGGAAAATTGGTACTTTCAACTTTTCCTTC-AAATATTTTTTT
66 AATCTTTATTTTTAAGAAAAATTGGTACTTCCAACTTTTCC-TCAAAATATATTTTT
*
21510339 TTTGAA-ATTTTAATTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAATACTTTTCTTAAT
1 TTTGAAGATTTTAATTTCAAGAAAAATTAATACTTTCAACTTTTCCTCAAAATACTTTTCTTAAT
* * *
21510403 AATTTTTATTTTTAAGAAAAATTTGTACTTCCAACTTTTTCTCAAAATATATTTTT
66 AATCTTTATTTTTAAGAAAAATTGGTACTTCCAACTTTTCCTCAAAATATATTTTT
21510459 T
1 T
21510460 AAATTTATTT
Statistics
Matches: 107, Mismatches: 13, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
119 2 0.02
120 99 0.93
121 6 0.06
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.50
Consensus pattern (121 bp):
TTTGAAGATTTTAATTTCAAGAAAAATTAATACTTTCAACTTTTCCTCAAAATACTTTTCTTAAT
AATCTTTATTTTTAAGAAAAATTGGTACTTCCAACTTTTCCTCAAAATATATTTTT
Found at i:21511427 original size:12 final size:11
Alignment explanation
Indices: 21511408--21511482 Score: 73
Period size: 12 Copynumber: 6.5 Consensus size: 11
21511398 TCAGAAAAGA
21511408 AAAAAAATACT
1 AAAAAAATACT
21511419 AAGAAAAATACT
1 AA-AAAAATACT
21511431 AAATAAAATACT
1 AAA-AAAATACT
*
21511443 AAATAAAATAAAT
1 AAA-AAAAT-ACT
*
21511456 AAAAAAATACC
1 AAAAAAATACT
21511467 AAAGAAAA-A-T
1 AAA-AAAATACT
21511477 AAAAAA
1 AAAAAA
21511483 TGGCTCGATT
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
9 3 0.05
10 3 0.05
11 8 0.14
12 37 0.66
13 5 0.09
ACGTcount: A:0.75, C:0.07, G:0.03, T:0.16
Consensus pattern (11 bp):
AAAAAAATACT
Found at i:21511438 original size:24 final size:23
Alignment explanation
Indices: 21511408--21511482 Score: 82
Period size: 24 Copynumber: 3.2 Consensus size: 23
21511398 TCAGAAAAGA
*
21511408 AAAAAAATACTAAGAAAAATACT
1 AAAAAAATACTAAGAAAAATAAT
21511431 AAATAAAATACTAA-ATAAAATAAAT
1 AAA-AAAATACTAAGA-AAAAT-AAT
*
21511456 AAAAAAATACCAAAGAAAAATAA-
1 AAAAAAATA-CTAAGAAAAATAAT
21511479 AAAA
1 AAAA
21511483 TGGCTCGATT
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
23 8 0.18
24 23 0.51
25 13 0.29
26 1 0.02
ACGTcount: A:0.75, C:0.07, G:0.03, T:0.16
Consensus pattern (23 bp):
AAAAAAATACTAAGAAAAATAAT
Found at i:21511456 original size:21 final size:22
Alignment explanation
Indices: 21511402--21511459 Score: 64
Period size: 24 Copynumber: 2.6 Consensus size: 22
21511392 ATTTCATCAG
* *
21511402 AAAAGAAAAAAAATACTAAGAA
1 AAAATAAATAAAATACTAAGAA
*
21511424 AAATACTAAATAAAATACTAA-AT
1 AAA-A-TAAATAAAATACTAAGAA
21511447 AAAATAAATAAAA
1 AAAATAAATAAAA
21511460 AAATACCAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 9 0.29
22 4 0.13
23 5 0.16
24 13 0.42
ACGTcount: A:0.74, C:0.05, G:0.03, T:0.17
Consensus pattern (22 bp):
AAAATAAATAAAATACTAAGAA
Found at i:21513271 original size:15 final size:15
Alignment explanation
Indices: 21513246--21513299 Score: 65
Period size: 15 Copynumber: 3.5 Consensus size: 15
21513236 CAACTCAACA
21513246 CTTTCTTTGTTTTTTT
1 CTTT-TTTGTTTTTTT
21513262 CTTTTTTG-TTTTTT
1 CTTTTTTGTTTTTTT
*
21513276 CTGTTTGTGTTTTTTT
1 CT-TTTTTGTTTTTTT
*
21513292 TTTTTTTG
1 CTTTTTTG
21513300 AGTAAACAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
14 8 0.24
15 14 0.42
16 11 0.33
ACGTcount: A:0.00, C:0.07, G:0.11, T:0.81
Consensus pattern (15 bp):
CTTTTTTGTTTTTTT
Found at i:21513462 original size:41 final size:41
Alignment explanation
Indices: 21513331--21513608 Score: 256
Period size: 42 Copynumber: 6.6 Consensus size: 41
21513321 CAGAGGTGAA
* * *
21513331 ACAACTTTGGAAAAAT-AAATGGCTCCTCTGAATATAGGCAAC
1 ACAACTTT-GAAAAATAAAAT-GCTCCTCTAAATAGAGGCACC
* * * *
21513373 AGAACTTTGAAAAAATAAATAAAGC-CCTTCT-AATCAGAGGCTCA
1 ACAACTTTG-AAAAAT-AA-AATGCTCC-TCTAAAT-AGAGGCACC
* *
21513417 ACAACTTTGAAAAATAAAATGCTCCTCTAAATAAAGGCACT
1 ACAACTTTGAAAAATAAAATGCTCCTCTAAATAGAGGCACC
* * *
21513458 ACAACTTTGAAAAAATAAATTGCTCCTTTAAACAGAGGCACC
1 ACAACTTTG-AAAAATAAAATGCTCCTCTAAATAGAGGCACC
* * * *
21513500 ATAACTTTGAAAAAATAAATTACTCCTCTAAACAGAGGCACC
1 ACAACTTTG-AAAAATAAAATGCTCCTCTAAATAGAGGCACC
* * * *
21513542 ATAACTTTGAAAAGTAAATTGCTCCTCTAAATAGAGGCAACT
1 ACAACTTTGAAAAATAAAATGCTCCTCTAAATAGAGGC-ACC
*
21513584 ATAACTTTGAAAAATAAAATGCTCC
1 ACAACTTTGAAAAATAAAATGCTCC
21513609 GTAACAATCA
Statistics
Matches: 201, Mismatches: 25, Indels: 20
0.82 0.10 0.08
Matches are distributed among these distances:
41 49 0.24
42 120 0.60
43 11 0.05
44 19 0.09
45 2 0.01
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (41 bp):
ACAACTTTGAAAAATAAAATGCTCCTCTAAATAGAGGCACC
Found at i:21513530 original size:84 final size:82
Alignment explanation
Indices: 21513310--21513608 Score: 289
Period size: 83 Copynumber: 3.6 Consensus size: 82
21513300 AGTAAACAAA
* * * * * *
21513310 GCTCCTCTAAACAGAGGTGA-AACAACTTTGGAAAAATAAATGGCTCCTCTGAATATAGGCAACA
1 GCTCCTTTAAACAGAGG-CACAATAACTTT-GAAAAATAAATTGCTCCTCTAAATAAAGGC-ACA
* *
21513374 GAACTTTGAAAAAATAAATAAA
63 CAACTTTGAAAAAATAAAT--T
* * * *
21513396 GC-CCTTCTAATCAGAGGCTCAACAACTTTGAAAAATAAAATGCTCCTCTAAATAAAGGCACTAC
1 GCTCCTT-TAAACAGAGGCACAATAACTTTGAAAAATAAATTGCTCCTCTAAATAAAGGCAC-AC
21513460 AACTTTGAAAAAATAAATT
64 AACTTTGAAAAAATAAATT
* * * * *
21513479 GCTCCTTTAAACAGAGGCACCATAACTTTGAAAAAATAAATTACTCCTCTAAACAGAGGCACCAT
1 GCTCCTTTAAACAGAGGCACAATAACTTTG-AAAAATAAATTGCTCCTCTAAATAAAGGCA-CAC
*
21513544 AACTTTG-AAAAGTAAATT
64 AACTTTGAAAAAATAAATT
* * * *
21513562 GCTCCTCTAAATAGAGGCAACTATAACTTTGAAAAATAAAATGCTCC
1 GCTCCTTTAAACAGAGGC-ACAATAACTTTGAAAAATAAATTGCTCC
21513609 GTAACAATCA
Statistics
Matches: 181, Mismatches: 25, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
83 61 0.34
84 51 0.28
85 49 0.27
86 20 0.11
ACGTcount: A:0.43, C:0.19, G:0.13, T:0.24
Consensus pattern (82 bp):
GCTCCTTTAAACAGAGGCACAATAACTTTGAAAAATAAATTGCTCCTCTAAATAAAGGCACACAA
CTTTGAAAAAATAAATT
Found at i:21514068 original size:20 final size:21
Alignment explanation
Indices: 21514019--21514131 Score: 80
Period size: 21 Copynumber: 5.6 Consensus size: 21
21514009 GTTTCACACC
21514019 TCAAAGATTCTCATTTGAAAT
1 TCAAAGATTCTCATTTGAAAT
*
21514040 TCAAAGATTCTCATTTG-AGT
1 TCAAAGATTCTCATTTGAAAT
* *
21514060 TCTAAGATTCACA-TT-AAA-
1 TCAAAGATTCTCATTTGAAAT
* * *
21514078 --AAA-ATT-TTAGGTTTCACAT
1 TCAAAGATTCTCA--TTTGAAAT
*
21514097 CTCAAAGATTTTCATTTGAAAT
1 -TCAAAGATTCTCATTTGAAAT
21514119 TCAAAGATTCTCA
1 TCAAAGATTCTCA
21514132 ATTTCTTTTT
Statistics
Matches: 69, Mismatches: 12, Indels: 22
0.67 0.12 0.21
Matches are distributed among these distances:
14 1 0.01
15 3 0.04
16 2 0.03
17 2 0.03
18 2 0.03
19 3 0.04
20 13 0.19
21 29 0.42
22 9 0.13
23 3 0.04
24 2 0.03
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (21 bp):
TCAAAGATTCTCATTTGAAAT
Found at i:21514122 original size:79 final size:80
Alignment explanation
Indices: 21513928--21514131 Score: 293
Period size: 80 Copynumber: 2.6 Consensus size: 80
21513918 CAGATCTTAG
* * * *
21513928 GGTTTCACACCACAAAGATTCTCATTCGAAACTCAAATATTCTCATTTAAGTTAAAAGATTCACA
1 GGTTTCACACCTCAAAGATTCTCATTTGAAATTCAAAGATTCTCATTTAAGTTAAAAGATTCACA
* * *
21513993 TTCAACAAATTTTTG
66 TTCAAAAAAATTTTA
* **
21514008 GGTTTCACACCTCAAAGATTCTCATTTGAAATTCAAAGATTCTCATTTGAGTTCTAAGATTCACA
1 GGTTTCACACCTCAAAGATTCTCATTTGAAATTCAAAGATTCTCATTTAAGTTAAAAGATTCACA
21514073 TT-AAAAAAATTTTA
66 TTCAAAAAAATTTTA
* *
21514087 GGTTTCACATCTCAAAGATTTTCATTTGAAATTCAAAGATTCTCA
1 GGTTTCACACCTCAAAGATTCTCATTTGAAATTCAAAGATTCTCA
21514132 ATTTCTTTTT
Statistics
Matches: 112, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
79 52 0.46
80 60 0.54
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (80 bp):
GGTTTCACACCTCAAAGATTCTCATTTGAAATTCAAAGATTCTCATTTAAGTTAAAAGATTCACA
TTCAAAAAAATTTTA
Found at i:21514532 original size:56 final size:56
Alignment explanation
Indices: 21514443--21514597 Score: 229
Period size: 56 Copynumber: 2.8 Consensus size: 56
21514433 CTTATCAGTA
* * * * *
21514443 CAAATTTCATCCTTCATCACTTAATCATCGTTCATGGCCTTTTCAGTATTTCAAAG
1 CAAATTTCATCCTCCATCACTTGATCATTGTTCATGGGCTTTTCAGTATTCCAAAG
* *
21514499 CAAATTTCATCCTCCATCACTTGATCATTGTTCATGGGCTTCTCAGTATTCCAGAG
1 CAAATTTCATCCTCCATCACTTGATCATTGTTCATGGGCTTTTCAGTATTCCAAAG
* *
21514555 TAAATTTCATCCTCCATCACTTGATCATTATTCATGGGCTTTT
1 CAAATTTCATCCTCCATCACTTGATCATTGTTCATGGGCTTTT
21514598 TAGCACCAGT
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 89 1.00
ACGTcount: A:0.25, C:0.25, G:0.11, T:0.39
Consensus pattern (56 bp):
CAAATTTCATCCTCCATCACTTGATCATTGTTCATGGGCTTTTCAGTATTCCAAAG
Found at i:21515285 original size:18 final size:18
Alignment explanation
Indices: 21515259--21515301 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
21515249 TGAGTATCTA
*
21515259 TTTTCTCTTCTTTCCATT
1 TTTTTTCTTCTTTCCATT
* *
21515277 TTTTTTCTTTTTTTCATT
1 TTTTTTCTTCTTTCCATT
21515295 TTTTTTC
1 TTTTTTC
21515302 ATTTTTTTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTTTTCTTCTTTCCATT
Done.